VF_1691 3d880698e7a3f0d2c505fdae1d0edbf9 504 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 464 44.169 T 10-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 VF_1691 3d880698e7a3f0d2c505fdae1d0edbf9 504 SUPERFAMILY SSF53271 250 483 3.15E-68 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like VF_1691 3d880698e7a3f0d2c505fdae1d0edbf9 504 Gene3D G3DSA:3.40.50.2020 277 441 6.3E-158 T 10-10-2018 VF_1691 3d880698e7a3f0d2c505fdae1d0edbf9 504 PIRSF PIRSF000485 1 481 9.3E-166 T 10-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 VF_1691 3d880698e7a3f0d2c505fdae1d0edbf9 504 Pfam PF13522 Glutamine amidotransferase domain 64 208 1.6E-16 T 10-10-2018 VF_1691 3d880698e7a3f0d2c505fdae1d0edbf9 504 SUPERFAMILY SSF56235 2 257 3.52E-73 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_1691 3d880698e7a3f0d2c505fdae1d0edbf9 504 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 464 2.4E-163 T 10-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 VF_1691 3d880698e7a3f0d2c505fdae1d0edbf9 504 Gene3D G3DSA:3.60.20.10 2 412 6.3E-158 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_1721 28682ee143f98f70a3d5109b3817b5d7 774 PIRSF PIRSF000382 8 773 0.0 T 10-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VF_1721 28682ee143f98f70a3d5109b3817b5d7 774 Gene3D G3DSA:3.20.20.210 399 766 0.0 T 10-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VF_1721 28682ee143f98f70a3d5109b3817b5d7 774 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 9 768 35.611 T 10-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VF_1721 28682ee143f98f70a3d5109b3817b5d7 774 SUPERFAMILY SSF51726 11 401 7.33E-106 T 10-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VF_1721 28682ee143f98f70a3d5109b3817b5d7 774 SUPERFAMILY SSF51726 406 767 4.58E-114 T 10-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VF_1721 28682ee143f98f70a3d5109b3817b5d7 774 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 11 325 1.5E-116 T 10-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VF_1721 28682ee143f98f70a3d5109b3817b5d7 774 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 441 763 3.9E-151 T 10-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VF_1721 28682ee143f98f70a3d5109b3817b5d7 774 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 14 768 0.0 T 10-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VF_1721 28682ee143f98f70a3d5109b3817b5d7 774 Gene3D G3DSA:3.20.20.210 13 534 0.0 T 10-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VF_A0535 02c6f73a4f4b8f4834658ea86015a4d4 493 Pfam PF02384 N-6 DNA Methylase 149 455 1.2E-105 T 10-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 VF_A0535 02c6f73a4f4b8f4834658ea86015a4d4 493 SUPERFAMILY SSF53335 8 490 1.63E-135 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_A0535 02c6f73a4f4b8f4834658ea86015a4d4 493 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 309 333 5.7E-21 T 10-10-2018 VF_A0535 02c6f73a4f4b8f4834658ea86015a4d4 493 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 172 188 5.7E-21 T 10-10-2018 VF_A0535 02c6f73a4f4b8f4834658ea86015a4d4 493 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 273 285 5.7E-21 T 10-10-2018 VF_A0535 02c6f73a4f4b8f4834658ea86015a4d4 493 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 196 210 5.7E-21 T 10-10-2018 VF_A0535 02c6f73a4f4b8f4834658ea86015a4d4 493 Gene3D G3DSA:3.40.50.150 149 443 2.5E-99 T 10-10-2018 VF_A0535 02c6f73a4f4b8f4834658ea86015a4d4 493 Gene3D G3DSA:1.20.1260.30 1 140 2.0E-16 T 10-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily VF_A0535 02c6f73a4f4b8f4834658ea86015a4d4 493 Pfam PF12161 HsdM N-terminal domain 10 137 7.2E-19 T 10-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain VF_A0994 521c6a8d71febe3be07aa760c060c057 802 Pfam PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain 47 382 1.5E-119 T 10-10-2018 IPR012970 Polysaccharide lyase 8, N-terminal alpha-helical VF_A0994 521c6a8d71febe3be07aa760c060c057 802 Pfam PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain 689 756 6.3E-14 T 10-10-2018 IPR004103 Polysaccharide lyase family 8, C-terminal GO:0005576|GO:0016829 VF_A0994 521c6a8d71febe3be07aa760c060c057 802 SUPERFAMILY SSF49863 686 800 1.27E-28 T 10-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 VF_A0994 521c6a8d71febe3be07aa760c060c057 802 Gene3D G3DSA:1.50.10.100 38 419 1.1E-117 T 10-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 VF_A0994 521c6a8d71febe3be07aa760c060c057 802 SUPERFAMILY SSF48230 38 416 1.18E-113 T 10-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 VF_A0994 521c6a8d71febe3be07aa760c060c057 802 Gene3D G3DSA:2.60.220.10 686 800 5.3E-21 T 10-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 VF_A0994 521c6a8d71febe3be07aa760c060c057 802 SUPERFAMILY SSF74650 421 694 2.51E-85 T 10-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VF_A0994 521c6a8d71febe3be07aa760c060c057 802 Pfam PF02278 Polysaccharide lyase family 8, super-sandwich domain 425 674 1.7E-74 T 10-10-2018 IPR003159 Polysaccharide lyase family 8, central domain GO:0005576|GO:0016829 VF_A0994 521c6a8d71febe3be07aa760c060c057 802 Gene3D G3DSA:2.70.98.10 421 685 2.4E-79 T 10-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 VF_2540 c41f529512f9eba01c619cc111fbc51d 157 Hamap MF_00598 Protein Smg [smg]. 1 157 32.417 T 10-10-2018 IPR007456 Smg VF_2540 c41f529512f9eba01c619cc111fbc51d 157 Pfam PF04361 Protein of unknown function (DUF494) 1 157 5.2E-58 T 10-10-2018 IPR007456 Smg VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 SUPERFAMILY SSF81271 375 447 1.77E-20 T 10-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 SUPERFAMILY SSF109604 4 190 1.24E-73 T 10-10-2018 VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 Gene3D G3DSA:3.10.20.30 381 455 2.8E-29 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 Gene3D G3DSA:3.30.460.10 193 325 6.6E-46 T 10-10-2018 VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 27 704 2.2E-271 T 10-10-2018 IPR004811 RelA/SpoT family GO:0015969 VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 Pfam PF13291 ACT domain 628 704 2.4E-15 T 10-10-2018 IPR002912 ACT domain VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 Gene3D G3DSA:3.30.70.260 628 707 1.2E-14 T 10-10-2018 VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 Gene3D G3DSA:1.10.3210.10 3 190 5.6E-79 T 10-10-2018 VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 SUPERFAMILY SSF81301 192 364 1.6E-58 T 10-10-2018 VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 Pfam PF02824 TGS domain 388 446 2.4E-20 T 10-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 SMART SM00471 41 153 4.5E-12 T 10-10-2018 IPR003607 HD/PDEase domain VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 SMART SM00954 235 345 2.6E-57 T 10-10-2018 IPR007685 RelA/SpoT GO:0015969 VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 Pfam PF13328 HD domain 29 175 1.0E-52 T 10-10-2018 IPR003607 HD/PDEase domain VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 SUPERFAMILY SSF55021 634 705 3.4E-8 T 10-10-2018 VF_0104 fad98baf5364cda2c3e84be6afc2a886 707 Pfam PF04607 Region found in RelA / SpoT proteins 235 344 5.2E-34 T 10-10-2018 IPR007685 RelA/SpoT GO:0015969 VF_0093 4215accc9d5670b2826e3908642eb949 333 Pfam PF00962 Adenosine/AMP deaminase 6 327 3.4E-88 T 10-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 VF_0093 4215accc9d5670b2826e3908642eb949 333 Gene3D G3DSA:3.20.20.140 1 333 6.7E-98 T 10-10-2018 VF_0093 4215accc9d5670b2826e3908642eb949 333 Hamap MF_00540 Adenosine deaminase [add]. 1 331 56.34 T 10-10-2018 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217 VF_0093 4215accc9d5670b2826e3908642eb949 333 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 327 1.1E-114 T 10-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 VF_0093 4215accc9d5670b2826e3908642eb949 333 SUPERFAMILY SSF51556 2 326 1.4E-76 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_0306 156360419c4863a3f32c39a88728f484 149 SUPERFAMILY SSF46785 10 140 6.12E-35 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0306 156360419c4863a3f32c39a88728f484 149 Gene3D G3DSA:3.30.1490.190 87 146 8.0E-15 T 10-10-2018 VF_0306 156360419c4863a3f32c39a88728f484 149 Gene3D G3DSA:1.10.10.10 2 85 7.6E-33 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0306 156360419c4863a3f32c39a88728f484 149 Pfam PF01475 Ferric uptake regulator family 16 135 4.9E-18 T 10-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 VF_2230 3825615aefabffce3182040954e9567e 274 Pfam PF00149 Calcineurin-like phosphoesterase 15 205 7.6E-17 T 10-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VF_2230 3825615aefabffce3182040954e9567e 274 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 205 260 6.0E-26 T 10-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 VF_2230 3825615aefabffce3182040954e9567e 274 SUPERFAMILY SSF56300 14 264 3.64E-57 T 10-10-2018 VF_2230 3825615aefabffce3182040954e9567e 274 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 14 260 38.7 T 10-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 VF_2230 3825615aefabffce3182040954e9567e 274 Gene3D G3DSA:3.60.21.10 3 270 2.2E-69 T 10-10-2018 IPR029052 Metallo-dependent phosphatase-like VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR00418 DNA topoisomerase II family signature 269 282 6.1E-71 T 10-10-2018 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR00418 DNA topoisomerase II family signature 35 50 6.1E-71 T 10-10-2018 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR00418 DNA topoisomerase II family signature 113 127 6.1E-71 T 10-10-2018 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR00418 DNA topoisomerase II family signature 488 504 6.1E-71 T 10-10-2018 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR00418 DNA topoisomerase II family signature 506 523 6.1E-71 T 10-10-2018 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR00418 DNA topoisomerase II family signature 737 753 6.1E-71 T 10-10-2018 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR00418 DNA topoisomerase II family signature 70 83 6.1E-71 T 10-10-2018 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR00418 DNA topoisomerase II family signature 526 538 6.1E-71 T 10-10-2018 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR00418 DNA topoisomerase II family signature 421 435 6.1E-71 T 10-10-2018 VF_0012 83bae38e35eaea71c5be806475a01f13 805 SUPERFAMILY SSF54211 221 393 2.47E-58 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR01159 DNA gyrase subunit B signature 243 261 1.7E-84 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR01159 DNA gyrase subunit B signature 758 770 1.7E-84 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR01159 DNA gyrase subunit B signature 180 195 1.7E-84 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR01159 DNA gyrase subunit B signature 313 329 1.7E-84 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR01159 DNA gyrase subunit B signature 220 242 1.7E-84 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR01159 DNA gyrase subunit B signature 5 15 1.7E-84 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR01159 DNA gyrase subunit B signature 195 208 1.7E-84 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR01159 DNA gyrase subunit B signature 471 480 1.7E-84 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR01159 DNA gyrase subunit B signature 361 375 1.7E-84 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR01159 DNA gyrase subunit B signature 375 395 1.7E-84 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VF_0012 83bae38e35eaea71c5be806475a01f13 805 PRINTS PR01159 DNA gyrase subunit B signature 774 790 1.7E-84 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VF_0012 83bae38e35eaea71c5be806475a01f13 805 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 805 107.673 T 10-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_0012 83bae38e35eaea71c5be806475a01f13 805 Gene3D G3DSA:3.40.50.670 399 569 7.2E-74 T 10-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VF_0012 83bae38e35eaea71c5be806475a01f13 805 ProSitePatterns PS00177 DNA topoisomerase II signature. 423 431 - T 10-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VF_0012 83bae38e35eaea71c5be806475a01f13 805 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 174 5.0E-22 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0012 83bae38e35eaea71c5be806475a01f13 805 Gene3D G3DSA:3.30.230.10 221 393 5.3E-74 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_0012 83bae38e35eaea71c5be806475a01f13 805 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 734 794 2.2E-30 T 10-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 VF_0012 83bae38e35eaea71c5be806475a01f13 805 Gene3D G3DSA:3.30.565.10 1 220 2.1E-92 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0012 83bae38e35eaea71c5be806475a01f13 805 SUPERFAMILY SSF55874 4 211 5.24E-72 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0012 83bae38e35eaea71c5be806475a01f13 805 Pfam PF00204 DNA gyrase B 221 391 3.3E-60 T 10-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VF_0012 83bae38e35eaea71c5be806475a01f13 805 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 5 805 0.0 T 10-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_0012 83bae38e35eaea71c5be806475a01f13 805 Gene3D G3DSA:3.10.20.690 593 684 7.5E-30 T 10-10-2018 VF_0012 83bae38e35eaea71c5be806475a01f13 805 SUPERFAMILY SSF56719 395 796 1.67E-87 T 10-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VF_0012 83bae38e35eaea71c5be806475a01f13 805 SMART SM00387 31 175 7.7E-29 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0012 83bae38e35eaea71c5be806475a01f13 805 SMART SM00433 35 798 2.5E-266 T 10-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VF_0012 83bae38e35eaea71c5be806475a01f13 805 Gene3D G3DSA:3.40.50.670 703 803 3.1E-27 T 10-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VF_0012 83bae38e35eaea71c5be806475a01f13 805 Pfam PF01751 Toprim domain 420 532 1.0E-18 T 10-10-2018 IPR006171 TOPRIM domain VF_2518 11a145608a90dc33fc487c75d50779e5 517 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 72 93 - T 10-10-2018 IPR023765 Solute-binding protein family 5, conserved site VF_2518 11a145608a90dc33fc487c75d50779e5 517 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 67 425 1.9E-86 T 10-10-2018 IPR000914 Solute-binding protein family 5 domain VF_2518 11a145608a90dc33fc487c75d50779e5 517 Gene3D G3DSA:3.90.76.10 57 165 2.3E-125 T 10-10-2018 VF_2518 11a145608a90dc33fc487c75d50779e5 517 PIRSF PIRSF002741 20 513 6.4E-93 T 10-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VF_2518 11a145608a90dc33fc487c75d50779e5 517 Gene3D G3DSA:3.10.105.10 279 494 2.3E-125 T 10-10-2018 VF_2518 11a145608a90dc33fc487c75d50779e5 517 SUPERFAMILY SSF53850 26 516 5.08E-129 T 10-10-2018 VF_2518 11a145608a90dc33fc487c75d50779e5 517 Gene3D G3DSA:3.40.190.10 32 278 2.3E-125 T 10-10-2018 VF_0951 2be5c9df158711d0e9d39664c06522e3 207 Gene3D G3DSA:1.10.8.10 160 207 1.5E-21 T 10-10-2018 VF_0951 2be5c9df158711d0e9d39664c06522e3 207 Pfam PF01330 RuvA N terminal domain 2 62 1.8E-19 T 10-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 VF_0951 2be5c9df158711d0e9d39664c06522e3 207 SUPERFAMILY SSF47781 66 136 7.23E-20 T 10-10-2018 IPR010994 RuvA domain 2-like VF_0951 2be5c9df158711d0e9d39664c06522e3 207 Gene3D G3DSA:2.40.50.140 1 66 6.6E-27 T 10-10-2018 VF_0951 2be5c9df158711d0e9d39664c06522e3 207 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 206 4.5E-63 T 10-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 VF_0951 2be5c9df158711d0e9d39664c06522e3 207 SMART SM00278 108 127 0.071 T 10-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VF_0951 2be5c9df158711d0e9d39664c06522e3 207 SMART SM00278 73 92 180.0 T 10-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VF_0951 2be5c9df158711d0e9d39664c06522e3 207 SUPERFAMILY SSF50249 2 63 6.28E-18 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_0951 2be5c9df158711d0e9d39664c06522e3 207 Pfam PF07499 RuvA, C-terminal domain 163 206 1.7E-15 T 10-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 VF_0951 2be5c9df158711d0e9d39664c06522e3 207 Gene3D G3DSA:1.10.150.20 67 143 6.8E-26 T 10-10-2018 VF_0951 2be5c9df158711d0e9d39664c06522e3 207 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 207 31.429 T 10-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 VF_0951 2be5c9df158711d0e9d39664c06522e3 207 SUPERFAMILY SSF46929 162 206 2.22E-11 T 10-10-2018 IPR036267 RuvA, C-terminal domain superfamily VF_0951 2be5c9df158711d0e9d39664c06522e3 207 Pfam PF14520 Helix-hairpin-helix domain 72 130 5.5E-15 T 10-10-2018 VF_A1166 469f100756179f98c4ae7cbdb1891b69 641 SUPERFAMILY SSF141868 412 635 2.88E-44 T 10-10-2018 IPR035919 EAL domain superfamily VF_A1166 469f100756179f98c4ae7cbdb1891b69 641 SMART SM00052 403 637 9.3E-17 T 10-10-2018 IPR001633 EAL domain VF_A1166 469f100756179f98c4ae7cbdb1891b69 641 Gene3D G3DSA:3.30.1040.50 102 151 1.3E-16 T 10-10-2018 VF_A1166 469f100756179f98c4ae7cbdb1891b69 641 Pfam PF16448 LapD/MoxY periplasmic domain 23 146 1.2E-38 T 10-10-2018 IPR032244 LapD/MoxY, periplasmic domain VF_A1166 469f100756179f98c4ae7cbdb1891b69 641 SUPERFAMILY SSF55073 243 385 1.49E-16 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A1166 469f100756179f98c4ae7cbdb1891b69 641 SMART SM00267 226 410 1.0E-7 T 10-10-2018 IPR000160 GGDEF domain VF_A1166 469f100756179f98c4ae7cbdb1891b69 641 Gene3D G3DSA:3.20.20.450 405 640 7.8E-43 T 10-10-2018 IPR035919 EAL domain superfamily VF_A1166 469f100756179f98c4ae7cbdb1891b69 641 Pfam PF00990 Diguanylate cyclase, GGDEF domain 238 385 3.4E-12 T 10-10-2018 IPR000160 GGDEF domain VF_A1166 469f100756179f98c4ae7cbdb1891b69 641 Pfam PF00563 EAL domain 412 635 1.7E-42 T 10-10-2018 IPR001633 EAL domain VF_A1166 469f100756179f98c4ae7cbdb1891b69 641 Gene3D G3DSA:3.30.70.270 223 388 2.2E-19 T 10-10-2018 VF_A0976 12f1f59139a385179a8d90da2fff295b 530 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 363 526 1.5E-41 T 10-10-2018 IPR000160 GGDEF domain VF_A0976 12f1f59139a385179a8d90da2fff295b 530 SUPERFAMILY SSF103190 217 317 2.59E-9 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_A0976 12f1f59139a385179a8d90da2fff295b 530 SUPERFAMILY SSF103190 43 212 2.88E-49 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_A0976 12f1f59139a385179a8d90da2fff295b 530 Pfam PF00990 Diguanylate cyclase, GGDEF domain 366 522 6.2E-44 T 10-10-2018 IPR000160 GGDEF domain VF_A0976 12f1f59139a385179a8d90da2fff295b 530 Gene3D G3DSA:3.30.70.270 360 529 2.7E-51 T 10-10-2018 VF_A0976 12f1f59139a385179a8d90da2fff295b 530 SUPERFAMILY SSF55073 371 528 2.28E-45 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0976 12f1f59139a385179a8d90da2fff295b 530 SMART SM00267 355 527 3.5E-49 T 10-10-2018 IPR000160 GGDEF domain VF_A0976 12f1f59139a385179a8d90da2fff295b 530 Gene3D G3DSA:3.30.450.20 80 213 1.1E-43 T 10-10-2018 VF_2305 a122fe5eb1627e21c966ed7e751d929d 260 PIRSF PIRSF000728 1 260 1.1E-66 T 10-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VF_2305 a122fe5eb1627e21c966ed7e751d929d 260 TIGRFAM TIGR00761 argB: acetylglutamate kinase 6 232 6.2E-63 T 10-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VF_2305 a122fe5eb1627e21c966ed7e751d929d 260 Gene3D G3DSA:3.40.1160.10 2 257 1.6E-64 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_2305 a122fe5eb1627e21c966ed7e751d929d 260 SUPERFAMILY SSF53633 5 258 2.09E-57 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_2305 a122fe5eb1627e21c966ed7e751d929d 260 Hamap MF_00082 Acetylglutamate kinase [argB]. 3 252 42.026 T 10-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VF_2305 a122fe5eb1627e21c966ed7e751d929d 260 Pfam PF00696 Amino acid kinase family 6 232 5.8E-33 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VF_1830 363c2dff36834be8baf1747ff76a88a4 376 Gene3D G3DSA:3.40.50.180 183 372 8.2E-64 T 10-10-2018 IPR035909 Methylesterase CheB, C-terminal VF_1830 363c2dff36834be8baf1747ff76a88a4 376 SUPERFAMILY SSF52738 185 370 3.53E-62 T 10-10-2018 IPR035909 Methylesterase CheB, C-terminal VF_1830 363c2dff36834be8baf1747ff76a88a4 376 PIRSF PIRSF000876 1 374 1.4E-126 T 10-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 VF_1830 363c2dff36834be8baf1747ff76a88a4 376 Gene3D G3DSA:3.40.50.2300 1 136 4.2E-31 T 10-10-2018 VF_1830 363c2dff36834be8baf1747ff76a88a4 376 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 3 374 38.558 T 10-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 VF_1830 363c2dff36834be8baf1747ff76a88a4 376 SMART SM00448 3 126 3.4E-24 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1830 363c2dff36834be8baf1747ff76a88a4 376 SUPERFAMILY SSF52172 2 109 5.55E-26 T 10-10-2018 IPR011006 CheY-like superfamily VF_1830 363c2dff36834be8baf1747ff76a88a4 376 Pfam PF00072 Response regulator receiver domain 5 109 2.8E-22 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1830 363c2dff36834be8baf1747ff76a88a4 376 Pfam PF01339 CheB methylesterase 191 368 1.4E-57 T 10-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 VF_A0260 a6d4009b6394d2e45fa20eb2d81feeac 638 Pfam PF02254 TrkA-N domain 422 534 3.5E-24 T 10-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VF_A0260 a6d4009b6394d2e45fa20eb2d81feeac 638 Pfam PF00999 Sodium/hydrogen exchanger family 10 390 8.5E-58 T 10-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 VF_A0260 a6d4009b6394d2e45fa20eb2d81feeac 638 Gene3D G3DSA:1.20.1530.20 2 399 1.3E-77 T 10-10-2018 IPR038770 Sodium/solute symporter superfamily VF_A0260 a6d4009b6394d2e45fa20eb2d81feeac 638 SUPERFAMILY SSF51735 419 563 2.52E-32 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0260 a6d4009b6394d2e45fa20eb2d81feeac 638 Gene3D G3DSA:3.40.50.720 419 580 4.9E-35 T 10-10-2018 VF_A0260 a6d4009b6394d2e45fa20eb2d81feeac 638 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 12 303 2.4E-75 T 10-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 VF_2048 c299233649f1698c344140db1d93f5b8 655 Gene3D G3DSA:1.50.10.10 307 647 5.2E-33 T 10-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 VF_2048 c299233649f1698c344140db1d93f5b8 655 SUPERFAMILY SSF48208 273 651 4.76E-67 T 10-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 VF_2048 c299233649f1698c344140db1d93f5b8 655 Pfam PF06202 Amylo-alpha-1,6-glucosidase 283 646 7.3E-109 T 10-10-2018 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-6798695|Reactome: R-HSA-70221 VF_2048 c299233649f1698c344140db1d93f5b8 655 Pfam PF12439 Glycogen debranching enzyme N terminal 21 227 5.0E-34 T 10-10-2018 IPR024742 Glycogen debranching enzyme, bacterial and archaeal type, N-terminal VF_0591 b42b5cd4eb4aec2ed6200ca6068a7152 302 Gene3D G3DSA:3.40.190.10 103 288 2.7E-58 T 10-10-2018 VF_0591 b42b5cd4eb4aec2ed6200ca6068a7152 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.7E-10 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0591 b42b5cd4eb4aec2ed6200ca6068a7152 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.7E-10 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0591 b42b5cd4eb4aec2ed6200ca6068a7152 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.7E-10 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0591 b42b5cd4eb4aec2ed6200ca6068a7152 302 Gene3D G3DSA:1.10.10.10 7 94 1.2E-24 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0591 b42b5cd4eb4aec2ed6200ca6068a7152 302 Gene3D G3DSA:3.40.190.10 163 261 2.7E-58 T 10-10-2018 VF_0591 b42b5cd4eb4aec2ed6200ca6068a7152 302 Pfam PF03466 LysR substrate binding domain 92 291 7.5E-39 T 10-10-2018 IPR005119 LysR, substrate-binding VF_0591 b42b5cd4eb4aec2ed6200ca6068a7152 302 SUPERFAMILY SSF53850 93 295 3.08E-39 T 10-10-2018 VF_0591 b42b5cd4eb4aec2ed6200ca6068a7152 302 SUPERFAMILY SSF46785 3 85 7.19E-24 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0591 b42b5cd4eb4aec2ed6200ca6068a7152 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 2.3E-21 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0092 fabee86676d3e125dc5268e8397f111f 518 SUPERFAMILY SSF55785 21 113 1.31E-21 T 10-10-2018 IPR035965 PAS domain superfamily VF_A0092 fabee86676d3e125dc5268e8397f111f 518 Gene3D G3DSA:1.10.287.950 188 517 4.3E-63 T 10-10-2018 VF_A0092 fabee86676d3e125dc5268e8397f111f 518 SUPERFAMILY SSF58104 219 517 2.18E-69 T 10-10-2018 VF_A0092 fabee86676d3e125dc5268e8397f111f 518 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 111 9.9E-10 T 10-10-2018 IPR000014 PAS domain VF_A0092 fabee86676d3e125dc5268e8397f111f 518 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 382 411 6.1E-10 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0092 fabee86676d3e125dc5268e8397f111f 518 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 269 298 6.1E-10 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0092 fabee86676d3e125dc5268e8397f111f 518 Gene3D G3DSA:3.30.450.20 6 115 6.9E-19 T 10-10-2018 VF_A0092 fabee86676d3e125dc5268e8397f111f 518 Pfam PF08447 PAS fold 30 113 5.5E-15 T 10-10-2018 IPR013655 PAS fold-3 GO:0005515 VF_A0092 fabee86676d3e125dc5268e8397f111f 518 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 312 483 1.6E-40 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0092 fabee86676d3e125dc5268e8397f111f 518 SMART SM00283 255 516 2.8E-67 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0472 958dae11490ce42477cab7ced6efebf1 385 PRINTS PR00097 Anthranilate synthase component II signature 264 275 1.2E-5 T 10-10-2018 VF_0472 958dae11490ce42477cab7ced6efebf1 385 PRINTS PR00097 Anthranilate synthase component II signature 236 245 1.2E-5 T 10-10-2018 VF_0472 958dae11490ce42477cab7ced6efebf1 385 PRINTS PR00097 Anthranilate synthase component II signature 349 362 1.2E-5 T 10-10-2018 VF_0472 958dae11490ce42477cab7ced6efebf1 385 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 1.7E-54 T 10-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0472 958dae11490ce42477cab7ced6efebf1 385 SMART SM01097 3 133 1.6E-95 T 10-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0472 958dae11490ce42477cab7ced6efebf1 385 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 48.971 T 10-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0472 958dae11490ce42477cab7ced6efebf1 385 Pfam PF00117 Glutamine amidotransferase class-I 197 372 8.9E-48 T 10-10-2018 IPR017926 Glutamine amidotransferase VF_0472 958dae11490ce42477cab7ced6efebf1 385 Gene3D G3DSA:3.50.30.20 2 151 2.0E-63 T 10-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0472 958dae11490ce42477cab7ced6efebf1 385 SUPERFAMILY SSF52317 153 376 1.01E-62 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_0472 958dae11490ce42477cab7ced6efebf1 385 SUPERFAMILY SSF52021 4 142 8.5E-59 T 10-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0472 958dae11490ce42477cab7ced6efebf1 385 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 2.5E-39 T 10-10-2018 VF_0472 958dae11490ce42477cab7ced6efebf1 385 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 2.5E-39 T 10-10-2018 VF_0472 958dae11490ce42477cab7ced6efebf1 385 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 194 208 2.5E-39 T 10-10-2018 VF_0472 958dae11490ce42477cab7ced6efebf1 385 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 2.5E-39 T 10-10-2018 VF_0472 958dae11490ce42477cab7ced6efebf1 385 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 233 247 2.5E-39 T 10-10-2018 VF_0472 958dae11490ce42477cab7ced6efebf1 385 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 4.0E-11 T 10-10-2018 VF_0472 958dae11490ce42477cab7ced6efebf1 385 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 4.0E-11 T 10-10-2018 VF_0472 958dae11490ce42477cab7ced6efebf1 385 PRINTS PR00096 Glutamine amidotransferase superfamily signature 236 245 4.0E-11 T 10-10-2018 VF_0472 958dae11490ce42477cab7ced6efebf1 385 Gene3D G3DSA:3.40.50.880 152 377 4.2E-76 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_0472 958dae11490ce42477cab7ced6efebf1 385 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 1.6E-150 T 10-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0975 a9c12e81da88956e5936f559e255b42f 605 Pfam PF00664 ABC transporter transmembrane region 30 302 1.1E-41 T 10-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VF_0975 a9c12e81da88956e5936f559e255b42f 605 Gene3D G3DSA:3.40.50.300 341 598 8.8E-84 T 10-10-2018 VF_0975 a9c12e81da88956e5936f559e255b42f 605 SUPERFAMILY SSF52540 343 584 6.04E-80 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0975 a9c12e81da88956e5936f559e255b42f 605 Pfam PF00005 ABC transporter 365 514 1.9E-28 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0975 a9c12e81da88956e5936f559e255b42f 605 SUPERFAMILY SSF90123 11 332 1.57E-69 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_0975 a9c12e81da88956e5936f559e255b42f 605 Gene3D G3DSA:1.20.1560.10 1 335 4.4E-78 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_0975 a9c12e81da88956e5936f559e255b42f 605 SMART SM00382 374 560 2.2E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0975 a9c12e81da88956e5936f559e255b42f 605 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0054 301e8bdaf8468647d77f52da773b862b 69 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 68 1.7E-20 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_A0054 301e8bdaf8468647d77f52da773b862b 69 SMART SM00530 6 62 0.0063 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_A0054 301e8bdaf8468647d77f52da773b862b 69 Gene3D G3DSA:1.10.260.40 3 69 1.9E-9 T 10-10-2018 VF_A0054 301e8bdaf8468647d77f52da773b862b 69 SUPERFAMILY SSF47413 1 67 2.7E-15 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 5 423 4.4E-163 T 10-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 113 128 - T 10-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 67 1.8E-21 T 10-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 350 424 8.7E-24 T 10-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 Gene3D G3DSA:3.90.1170.30 337 433 5.1E-32 T 10-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 Hamap MF_01628 Thymidine phosphorylase [deoA]. 2 438 45.937 T 10-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 Gene3D G3DSA:1.20.970.10 7 195 5.3E-130 T 10-10-2018 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 Pfam PF00591 Glycosyl transferase family, a/b domain 80 309 2.2E-49 T 10-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 SUPERFAMILY SSF52418 73 333 4.06E-89 T 10-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 SUPERFAMILY SSF47648 2 70 1.44E-21 T 10-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 SUPERFAMILY SSF54680 337 438 1.26E-32 T 10-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 SMART SM00941 350 424 7.1E-29 T 10-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 3 438 6.8E-222 T 10-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 PIRSF PIRSF000478 1 439 1.7E-154 T 10-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_0505 943f7a31a6fa80c58a31d1c8cf334296 443 Gene3D G3DSA:3.40.1030.10 70 321 5.3E-130 T 10-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_1672 5dc1939379ad09733e6417c16605b73a 440 Pfam PF00425 chorismate binding enzyme 163 416 2.3E-69 T 10-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal VF_1672 5dc1939379ad09733e6417c16605b73a 440 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 84 423 7.6E-104 T 10-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 VF_1672 5dc1939379ad09733e6417c16605b73a 440 SUPERFAMILY SSF56322 33 427 8.37E-99 T 10-10-2018 IPR005801 ADC synthase GO:0009058 VF_1672 5dc1939379ad09733e6417c16605b73a 440 Hamap MF_01935 Isochorismate synthase MenF [menF]. 3 426 32.134 T 10-10-2018 IPR034681 Isochorismate synthase MenF GO:0008909|GO:0009234 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 VF_1672 5dc1939379ad09733e6417c16605b73a 440 Gene3D G3DSA:3.60.120.10 2 427 6.7E-129 T 10-10-2018 IPR005801 ADC synthase GO:0009058 VF_0495 4253bcf5f29552c2dd82c12ffa97aca3 178 PIRSF PIRSF025550 7 178 1.3E-84 T 10-10-2018 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT VF_0495 4253bcf5f29552c2dd82c12ffa97aca3 178 Gene3D G3DSA:3.30.1050.10 6 143 1.3E-7 T 10-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VF_0495 4253bcf5f29552c2dd82c12ffa97aca3 178 SUPERFAMILY SSF55718 32 145 1.11E-20 T 10-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VF_0495 4253bcf5f29552c2dd82c12ffa97aca3 178 Pfam PF02036 SCP-2 sterol transfer family 46 140 3.2E-18 T 10-10-2018 IPR003033 SCP2 sterol-binding domain VF_2184 90527f0e4865569e9c45cef9106bd0af 299 SUPERFAMILY SSF51690 134 298 1.18E-59 T 10-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 VF_2184 90527f0e4865569e9c45cef9106bd0af 299 Gene3D G3DSA:3.90.1170.20 24 297 1.2E-125 T 10-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 VF_2184 90527f0e4865569e9c45cef9106bd0af 299 PIRSF PIRSF006250 20 299 3.8E-101 T 10-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 VF_2184 90527f0e4865569e9c45cef9106bd0af 299 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 30 298 1.1E-95 T 10-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 VF_2184 90527f0e4865569e9c45cef9106bd0af 299 SUPERFAMILY SSF54675 18 132 6.67E-33 T 10-10-2018 VF_2184 90527f0e4865569e9c45cef9106bd0af 299 Gene3D G3DSA:3.20.20.70 142 288 1.2E-125 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_2184 90527f0e4865569e9c45cef9106bd0af 299 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 46 131 4.3E-27 T 10-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 VF_2184 90527f0e4865569e9c45cef9106bd0af 299 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 135 297 1.1E-57 T 10-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 VF_A0082 f4927c1b6535687daa4a33995c93512b 812 TIGRFAM TIGR02166 dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 11 808 0.0 T 10-10-2018 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE GO:0009389|GO:0030151|GO:0051539|GO:0055114 VF_A0082 f4927c1b6535687daa4a33995c93512b 812 Gene3D G3DSA:3.40.50.740 418 622 6.0E-51 T 10-10-2018 VF_A0082 f4927c1b6535687daa4a33995c93512b 812 SMART SM00926 53 112 5.7E-10 T 10-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A0082 f4927c1b6535687daa4a33995c93512b 812 Gene3D G3DSA:3.40.228.10 343 416 1.5E-17 T 10-10-2018 VF_A0082 f4927c1b6535687daa4a33995c93512b 812 SUPERFAMILY SSF53706 54 692 5.1E-179 T 10-10-2018 VF_A0082 f4927c1b6535687daa4a33995c93512b 812 Gene3D G3DSA:3.40.50.740 49 320 5.1E-91 T 10-10-2018 VF_A0082 f4927c1b6535687daa4a33995c93512b 812 Pfam PF00384 Molybdopterin oxidoreductase 115 571 1.8E-104 T 10-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A0082 f4927c1b6535687daa4a33995c93512b 812 Pfam PF01568 Molydopterin dinucleotide binding domain 690 801 9.3E-27 T 10-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VF_A0082 f4927c1b6535687daa4a33995c93512b 812 SUPERFAMILY SSF50692 636 806 5.88E-39 T 10-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VF_A0082 f4927c1b6535687daa4a33995c93512b 812 Gene3D G3DSA:2.40.40.20 665 812 2.5E-43 T 10-10-2018 VF_A0082 f4927c1b6535687daa4a33995c93512b 812 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 58 76 - T 10-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 VF_A0082 f4927c1b6535687daa4a33995c93512b 812 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 54 112 6.8E-17 T 10-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A0082 f4927c1b6535687daa4a33995c93512b 812 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 726 753 - T 10-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 VF_A0084 6979f12c51504b12b74b80aae911fdb6 185 Gene3D G3DSA:3.30.70.20 59 110 3.1E-11 T 10-10-2018 VF_A0084 6979f12c51504b12b74b80aae911fdb6 185 Gene3D G3DSA:3.30.70.20 136 181 3.1E-10 T 10-10-2018 VF_A0084 6979f12c51504b12b74b80aae911fdb6 185 SUPERFAMILY SSF54862 61 180 2.38E-18 T 10-10-2018 VF_A0084 6979f12c51504b12b74b80aae911fdb6 185 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 64 75 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_A0084 6979f12c51504b12b74b80aae911fdb6 185 Pfam PF13187 4Fe-4S dicluster domain 64 109 1.6E-8 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_A0084 6979f12c51504b12b74b80aae911fdb6 185 Pfam PF00037 4Fe-4S binding domain 155 177 1.4E-5 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_0776 2e3dc651b765046b86149071c42f5b1e 858 SUPERFAMILY SSF51905 2 186 1.87E-40 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0776 2e3dc651b765046b86149071c42f5b1e 858 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 560 622 1.1E-11 T 10-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 7.4E-15 T 10-10-2018 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 7.4E-15 T 10-10-2018 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 7.4E-15 T 10-10-2018 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 7.4E-15 T 10-10-2018 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 7.4E-15 T 10-10-2018 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 Gene3D G3DSA:3.50.50.60 7 283 1.3E-80 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0776 2e3dc651b765046b86149071c42f5b1e 858 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 800 0.0 T 10-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 Gene3D G3DSA:1.10.10.1100 423 477 3.6E-13 T 10-10-2018 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 679 695 - T 10-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 SUPERFAMILY SSF51905 143 310 1.2E-26 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0776 2e3dc651b765046b86149071c42f5b1e 858 PIRSF PIRSF037149 1 836 0.0 T 10-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 633 771 2.1E-14 T 10-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 4.9E-10 T 10-10-2018 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 4.9E-10 T 10-10-2018 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 4.9E-10 T 10-10-2018 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 105 114 4.9E-10 T 10-10-2018 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 Gene3D G3DSA:3.30.413.10 631 785 2.7E-31 T 10-10-2018 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 Pfam PF04324 BFD-like [2Fe-2S] binding domain 423 471 6.7E-15 T 10-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain VF_0776 2e3dc651b765046b86149071c42f5b1e 858 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 286 8.3E-52 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 PRINTS PR00397 Sirohaem Fe-binding site signature 679 697 7.4E-6 T 10-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 PRINTS PR00397 Sirohaem Fe-binding site signature 636 654 7.4E-6 T 10-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 SUPERFAMILY SSF56014 633 809 5.23E-46 T 10-10-2018 VF_0776 2e3dc651b765046b86149071c42f5b1e 858 Gene3D G3DSA:3.50.50.60 110 246 1.3E-80 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0776 2e3dc651b765046b86149071c42f5b1e 858 SUPERFAMILY SSF55124 502 628 4.65E-32 T 10-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_1442 adb20ed3c070f508f9e4d19de230ade5 111 Pfam PF01910 Thiamine-binding protein 13 92 5.9E-24 T 10-10-2018 IPR002767 Thiamine-binding protein VF_1442 adb20ed3c070f508f9e4d19de230ade5 111 SUPERFAMILY SSF89957 11 90 2.75E-21 T 10-10-2018 IPR029756 MTH1187/YkoF-like VF_1442 adb20ed3c070f508f9e4d19de230ade5 111 Gene3D G3DSA:3.30.70.930 4 107 1.3E-31 T 10-10-2018 IPR029756 MTH1187/YkoF-like VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 192 488 2.2E-30 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 700 754 2.2E-18 T 10-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Gene3D G3DSA:3.50.50.60 318 524 2.2E-28 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Gene3D G3DSA:3.50.50.60 188 308 1.6E-33 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 SMART SM00926 699 755 2.4E-18 T 10-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Gene3D G3DSA:3.40.228.10 836 1037 2.1E-183 T 10-10-2018 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Gene3D G3DSA:3.30.70.20 598 688 7.4E-19 T 10-10-2018 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 96 175 7.5E-18 T 10-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 2 74 6.1E-12 T 10-10-2018 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 670 681 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 SUPERFAMILY SSF54862 566 688 5.86E-21 T 10-10-2018 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Pfam PF00384 Molybdopterin oxidoreductase 758 1184 2.3E-95 T 10-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 1130 1147 - T 10-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 SUPERFAMILY SSF46548 93 200 1.15E-18 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Gene3D G3DSA:3.40.50.740 763 1226 2.1E-183 T 10-10-2018 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Pfam PF01568 Molydopterin dinucleotide binding domain 1267 1371 3.9E-30 T 10-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 SUPERFAMILY SSF50692 1223 1378 1.15E-44 T 10-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Pfam PF12838 4Fe-4S dicluster domain 619 684 5.6E-8 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 SUPERFAMILY SSF51971 190 430 4.0E-62 T 10-10-2018 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 704 721 - T 10-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 PRINTS PR00419 Adrenodoxin reductase family signature 192 214 3.5E-15 T 10-10-2018 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 PRINTS PR00419 Adrenodoxin reductase family signature 215 228 3.5E-15 T 10-10-2018 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 PRINTS PR00419 Adrenodoxin reductase family signature 323 337 3.5E-15 T 10-10-2018 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Gene3D G3DSA:2.20.25.90 699 755 1.7E-18 T 10-10-2018 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Gene3D G3DSA:3.10.20.740 1 123 1.1E-25 T 10-10-2018 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 SUPERFAMILY SSF53706 699 1238 2.75E-205 T 10-10-2018 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 Gene3D G3DSA:2.40.40.20 1257 1378 1.7E-43 T 10-10-2018 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 SUPERFAMILY SSF54292 1 98 4.66E-28 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VF_A0251 798a957d8c2705a96e4f7436391b1ea7 1387 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 704 1375 2.9E-252 T 10-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 VF_0687 7af37d95a49ab473e568cdacfb06def6 183 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 149 3.6E-39 T 10-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 VF_0687 7af37d95a49ab473e568cdacfb06def6 183 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 5 149 4.0E-35 T 10-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 VF_0687 7af37d95a49ab473e568cdacfb06def6 183 Pfam PF13242 HAD-hyrolase-like 107 176 1.6E-11 T 10-10-2018 VF_0687 7af37d95a49ab473e568cdacfb06def6 183 Gene3D G3DSA:3.40.50.1000 2 183 2.6E-62 T 10-10-2018 IPR023214 HAD superfamily VF_0687 7af37d95a49ab473e568cdacfb06def6 183 SUPERFAMILY SSF56784 3 181 1.21E-50 T 10-10-2018 IPR036412 HAD-like superfamily VF_0687 7af37d95a49ab473e568cdacfb06def6 183 PIRSF PIRSF004682 1 183 6.8E-65 T 10-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 VF_0687 7af37d95a49ab473e568cdacfb06def6 183 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 4 179 9.2E-84 T 10-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 VF_0734 8492ed85402e0c9145b71d4e17574181 365 Gene3D G3DSA:3.30.70.270 19 179 2.5E-67 T 10-10-2018 VF_0734 8492ed85402e0c9145b71d4e17574181 365 SUPERFAMILY SSF56672 14 249 4.45E-95 T 10-10-2018 VF_0734 8492ed85402e0c9145b71d4e17574181 365 Gene3D G3DSA:2.30.40.20 36 88 2.5E-67 T 10-10-2018 VF_0734 8492ed85402e0c9145b71d4e17574181 365 Pfam PF00817 impB/mucB/samB family 22 169 1.6E-53 T 10-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VF_0734 8492ed85402e0c9145b71d4e17574181 365 Pfam PF11799 impB/mucB/samB family C-terminal domain 251 352 3.8E-6 T 10-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VF_0734 8492ed85402e0c9145b71d4e17574181 365 Hamap MF_01113 DNA polymerase IV [dinB]. 16 364 37.148 T 10-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 VF_0734 8492ed85402e0c9145b71d4e17574181 365 SUPERFAMILY SSF100879 256 364 3.92E-23 T 10-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VF_0734 8492ed85402e0c9145b71d4e17574181 365 Gene3D G3DSA:1.10.150.20 191 244 1.4E-14 T 10-10-2018 VF_0734 8492ed85402e0c9145b71d4e17574181 365 Gene3D G3DSA:3.30.1490.100 252 365 4.4E-24 T 10-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VF_2080 1693d1259e113245ba4376db540560a1 745 SUPERFAMILY SSF81301 195 408 1.96E-61 T 10-10-2018 VF_2080 1693d1259e113245ba4376db540560a1 745 Pfam PF13328 HD domain 47 190 4.0E-38 T 10-10-2018 IPR003607 HD/PDEase domain VF_2080 1693d1259e113245ba4376db540560a1 745 Gene3D G3DSA:3.30.70.260 666 745 1.8E-14 T 10-10-2018 VF_2080 1693d1259e113245ba4376db540560a1 745 SUPERFAMILY SSF81271 397 463 1.13E-20 T 10-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 VF_2080 1693d1259e113245ba4376db540560a1 745 SUPERFAMILY SSF109604 25 205 2.1E-44 T 10-10-2018 VF_2080 1693d1259e113245ba4376db540560a1 745 Gene3D G3DSA:1.10.3210.10 21 205 1.5E-36 T 10-10-2018 VF_2080 1693d1259e113245ba4376db540560a1 745 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 64 741 1.6E-184 T 10-10-2018 IPR004811 RelA/SpoT family GO:0015969 VF_2080 1693d1259e113245ba4376db540560a1 745 Gene3D G3DSA:3.30.460.10 208 340 1.4E-48 T 10-10-2018 VF_2080 1693d1259e113245ba4376db540560a1 745 SUPERFAMILY SSF55021 668 744 1.05E-8 T 10-10-2018 VF_2080 1693d1259e113245ba4376db540560a1 745 Gene3D G3DSA:3.10.20.30 398 471 2.6E-30 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_2080 1693d1259e113245ba4376db540560a1 745 Pfam PF02824 TGS domain 404 463 1.9E-20 T 10-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 VF_2080 1693d1259e113245ba4376db540560a1 745 SMART SM00954 250 360 1.8E-64 T 10-10-2018 IPR007685 RelA/SpoT GO:0015969 VF_2080 1693d1259e113245ba4376db540560a1 745 Pfam PF13291 ACT domain 667 743 3.2E-14 T 10-10-2018 IPR002912 ACT domain VF_2080 1693d1259e113245ba4376db540560a1 745 Pfam PF04607 Region found in RelA / SpoT proteins 250 359 4.6E-36 T 10-10-2018 IPR007685 RelA/SpoT GO:0015969 VF_0857 aae0bbfac50af30c95d31aac441f3298 395 Gene3D G3DSA:3.40.47.10 247 391 1.7E-43 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0857 aae0bbfac50af30c95d31aac441f3298 395 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 245 345 4.1E-29 T 10-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal VF_0857 aae0bbfac50af30c95d31aac441f3298 395 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 94 234 4.3E-18 T 10-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal VF_0857 aae0bbfac50af30c95d31aac441f3298 395 SMART SM00825 Beta-ketoacyl synthase 50 392 4.1E-7 T 10-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain VF_0857 aae0bbfac50af30c95d31aac441f3298 395 SUPERFAMILY SSF53901 5 232 1.81E-34 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0857 aae0bbfac50af30c95d31aac441f3298 395 SUPERFAMILY SSF53901 207 393 9.39E-44 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0857 aae0bbfac50af30c95d31aac441f3298 395 Gene3D G3DSA:3.40.47.10 11 246 7.9E-27 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0857 aae0bbfac50af30c95d31aac441f3298 395 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 10-10-2018 IPR018201 Beta-ketoacyl synthase, active site VF_A0112 d4c52e7e199ecd647d716bc2ec5c2267 366 PRINTS PR00164 ABC-2 type transport system membrane protein signature 288 307 5.8E-7 T 10-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VF_A0112 d4c52e7e199ecd647d716bc2ec5c2267 366 PRINTS PR00164 ABC-2 type transport system membrane protein signature 308 327 5.8E-7 T 10-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VF_A0112 d4c52e7e199ecd647d716bc2ec5c2267 366 PRINTS PR00164 ABC-2 type transport system membrane protein signature 251 275 5.8E-7 T 10-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VF_A0112 d4c52e7e199ecd647d716bc2ec5c2267 366 Pfam PF12698 ABC-2 family transporter protein 24 357 1.4E-48 T 10-10-2018 VF_0913 647c94cc85599724ec76bc99080863a1 331 SUPERFAMILY SSF51735 3 166 2.77E-65 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0913 647c94cc85599724ec76bc99080863a1 331 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 1.6E-38 T 10-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0913 647c94cc85599724ec76bc99080863a1 331 PIRSF PIRSF000149 1 331 2.1E-131 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0913 647c94cc85599724ec76bc99080863a1 331 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 1.7E-135 T 10-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0913 647c94cc85599724ec76bc99080863a1 331 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 312 1.3E-67 T 10-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0913 647c94cc85599724ec76bc99080863a1 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 4.2E-46 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0913 647c94cc85599724ec76bc99080863a1 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 4.2E-46 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0913 647c94cc85599724ec76bc99080863a1 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 4.2E-46 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0913 647c94cc85599724ec76bc99080863a1 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 4.2E-46 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0913 647c94cc85599724ec76bc99080863a1 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 4.2E-46 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0913 647c94cc85599724ec76bc99080863a1 331 SUPERFAMILY SSF55347 149 312 2.21E-75 T 10-10-2018 VF_0913 647c94cc85599724ec76bc99080863a1 331 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 10-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0913 647c94cc85599724ec76bc99080863a1 331 Gene3D G3DSA:3.40.50.720 4 326 1.4E-151 T 10-10-2018 VF_0913 647c94cc85599724ec76bc99080863a1 331 Gene3D G3DSA:3.30.360.10 149 314 1.4E-151 T 10-10-2018 VF_0913 647c94cc85599724ec76bc99080863a1 331 SMART SM00846 3 150 6.8E-91 T 10-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_2539 85120c8d22d4501c2430cbf1bed78f70 189 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 113 150 4.3E-13 T 10-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VF_2539 85120c8d22d4501c2430cbf1bed78f70 189 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 20 57 7.6E-16 T 10-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VF_2539 85120c8d22d4501c2430cbf1bed78f70 189 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 68 103 5.9E-16 T 10-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VF_2539 85120c8d22d4501c2430cbf1bed78f70 189 SUPERFAMILY SSF57783 66 106 2.38E-12 T 10-10-2018 VF_2539 85120c8d22d4501c2430cbf1bed78f70 189 Gene3D G3DSA:3.30.65.10 8 61 3.9E-7 T 10-10-2018 VF_2539 85120c8d22d4501c2430cbf1bed78f70 189 Gene3D G3DSA:3.30.65.10 62 109 2.0E-8 T 10-10-2018 VF_2539 85120c8d22d4501c2430cbf1bed78f70 189 SUPERFAMILY SSF57783 16 64 1.02E-13 T 10-10-2018 VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 Gene3D G3DSA:2.40.30.10 203 303 2.2E-31 T 10-10-2018 VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 Gene3D G3DSA:3.40.50.300 5 202 3.3E-69 T 10-10-2018 VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 SUPERFAMILY SSF54980 306 391 3.31E-16 T 10-10-2018 IPR035647 EF-G domain III/V-like VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 9 604 1.6E-289 T 10-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 Gene3D G3DSA:2.40.50.250 488 604 2.5E-128 T 10-10-2018 VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 SUPERFAMILY SSF50447 155 303 2.02E-32 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 48 63 - T 10-10-2018 IPR031157 Tr-type G domain, conserved site VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 SUPERFAMILY SSF54980 403 517 4.75E-27 T 10-10-2018 IPR035647 EF-G domain III/V-like VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 Pfam PF00679 Elongation factor G C-terminus 401 481 1.7E-20 T 10-10-2018 IPR000640 Elongation factor EFG, domain V-like VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 154 7.8E-24 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 Gene3D G3DSA:3.30.70.870 310 595 2.5E-128 T 10-10-2018 VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 Pfam PF00009 Elongation factor Tu GTP binding domain 8 198 4.2E-57 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 Gene3D G3DSA:3.30.70.240 393 487 2.5E-128 T 10-10-2018 VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 Pfam PF03144 Elongation factor Tu domain 2 223 293 3.7E-10 T 10-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 SUPERFAMILY SSF52540 5 211 6.42E-59 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 PRINTS PR00315 GTP-binding elongation factor signature 55 63 1.8E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 PRINTS PR00315 GTP-binding elongation factor signature 75 85 1.8E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 PRINTS PR00315 GTP-binding elongation factor signature 91 102 1.8E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 PRINTS PR00315 GTP-binding elongation factor signature 127 136 1.8E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0099 8cd0915e0787694a6467ecb52694c6a9 610 PRINTS PR00315 GTP-binding elongation factor signature 11 24 1.8E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_1498 9b7ce2a6707e586fcc58f803cd3ef202 367 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 19 342 20.784 T 10-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VF_1498 9b7ce2a6707e586fcc58f803cd3ef202 367 TIGRFAM TIGR02735 purC_vibrio: phosphoribosylaminoimidazole-succinocarboxamide synthase 2 366 5.8E-212 T 10-10-2018 IPR014106 Phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio-type GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 VF_1498 9b7ce2a6707e586fcc58f803cd3ef202 367 Pfam PF01259 SAICAR synthetase 22 293 4.7E-45 T 10-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VF_1498 9b7ce2a6707e586fcc58f803cd3ef202 367 Gene3D G3DSA:3.30.470.20 129 284 3.3E-35 T 10-10-2018 VF_1498 9b7ce2a6707e586fcc58f803cd3ef202 367 SUPERFAMILY SSF56104 14 343 4.9E-63 T 10-10-2018 VF_1498 9b7ce2a6707e586fcc58f803cd3ef202 367 Gene3D G3DSA:3.30.200.20 13 128 1.8E-24 T 10-10-2018 VF_0831 c7314610724260265c337dec0052efa4 446 Gene3D G3DSA:3.10.450.350 95 181 8.5E-10 T 10-10-2018 VF_0831 c7314610724260265c337dec0052efa4 446 Gene3D G3DSA:2.70.70.10 288 418 4.3E-49 T 10-10-2018 IPR011055 Duplicated hybrid motif VF_0831 c7314610724260265c337dec0052efa4 446 Pfam PF08525 Opacity-associated protein A N-terminal motif 11 38 1.6E-6 T 10-10-2018 IPR013731 Opacity-associated protein A, N-terminal VF_0831 c7314610724260265c337dec0052efa4 446 Gene3D G3DSA:3.10.450.350 183 287 1.3E-30 T 10-10-2018 VF_0831 c7314610724260265c337dec0052efa4 446 SUPERFAMILY SSF51261 168 414 1.73E-70 T 10-10-2018 IPR011055 Duplicated hybrid motif VF_0831 c7314610724260265c337dec0052efa4 446 Pfam PF01551 Peptidase family M23 318 411 1.2E-32 T 10-10-2018 IPR016047 Peptidase M23 VF_0831 c7314610724260265c337dec0052efa4 446 Pfam PF04225 Opacity-associated protein A LysM-like domain 100 163 4.4E-8 T 10-10-2018 IPR007340 Opacity-associated protein A VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 Gene3D G3DSA:3.40.50.300 550 764 7.4E-89 T 10-10-2018 VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 Gene3D G3DSA:1.10.1780.10 1 148 1.3E-28 T 10-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 SMART SM01086 766 855 8.5E-36 T 10-10-2018 IPR019489 Clp ATPase, C-terminal VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 759 1.1E-56 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 SMART SM00382 198 344 1.2E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 SMART SM00382 597 748 2.6E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 Gene3D G3DSA:1.10.8.60 766 860 1.5E-28 T 10-10-2018 VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 2.5E-42 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 2.5E-42 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 2.5E-42 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 2.5E-42 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 SUPERFAMILY SSF52540 546 850 2.91E-85 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 845 9.1E-28 T 10-10-2018 IPR019489 Clp ATPase, C-terminal VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 5.0E-11 T 10-10-2018 IPR004176 Clp, N-terminal VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 1.7E-12 T 10-10-2018 IPR004176 Clp, N-terminal VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 Gene3D G3DSA:3.40.50.300 149 342 1.8E-74 T 10-10-2018 VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 10-10-2018 IPR028299 ClpA/B, conserved site 2 VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 SUPERFAMILY SSF52540 159 545 2.7E-100 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 335 7.0E-13 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 Gene3D G3DSA:3.40.50.300 343 544 4.7E-66 T 10-10-2018 VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 10-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 SUPERFAMILY SSF81923 4 156 3.14E-40 T 10-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 VF_0566 4034e6b551ae13ce296d5ef1d5c00aca 861 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 10-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 VF_0440 013ac0b16176b696ebbe129e5a4b95ab 664 SUPERFAMILY SSF52518 333 526 7.28E-68 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_0440 013ac0b16176b696ebbe129e5a4b95ab 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 333 6.1E-165 T 10-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VF_0440 013ac0b16176b696ebbe129e5a4b95ab 664 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 10-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VF_0440 013ac0b16176b696ebbe129e5a4b95ab 664 Pfam PF02779 Transketolase, pyrimidine binding domain 354 524 3.6E-47 T 10-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VF_0440 013ac0b16176b696ebbe129e5a4b95ab 664 SUPERFAMILY SSF52518 6 320 9.64E-118 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_0440 013ac0b16176b696ebbe129e5a4b95ab 664 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 10-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VF_0440 013ac0b16176b696ebbe129e5a4b95ab 664 SMART SM00861 354 525 1.1E-66 T 10-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VF_0440 013ac0b16176b696ebbe129e5a4b95ab 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 663 0.0 T 10-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 VF_0440 013ac0b16176b696ebbe129e5a4b95ab 664 Gene3D G3DSA:3.40.50.970 326 537 4.8E-85 T 10-10-2018 VF_0440 013ac0b16176b696ebbe129e5a4b95ab 664 Gene3D G3DSA:3.40.50.920 538 664 5.9E-45 T 10-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VF_0440 013ac0b16176b696ebbe129e5a4b95ab 664 Pfam PF02780 Transketolase, C-terminal domain 544 655 3.4E-19 T 10-10-2018 IPR033248 Transketolase, C-terminal domain VF_0440 013ac0b16176b696ebbe129e5a4b95ab 664 Gene3D G3DSA:3.40.50.970 1 325 1.3E-128 T 10-10-2018 VF_0440 013ac0b16176b696ebbe129e5a4b95ab 664 SUPERFAMILY SSF52922 533 664 1.96E-44 T 10-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VF_2204 c454813f1988067b9f756a9f4cc58675 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 9.3E-6 T 10-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2204 c454813f1988067b9f756a9f4cc58675 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 25.717 T 10-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2204 c454813f1988067b9f756a9f4cc58675 360 Pfam PF00953 Glycosyl transferase family 4 99 283 7.4E-35 T 10-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 VF_2204 c454813f1988067b9f756a9f4cc58675 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 10-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2204 c454813f1988067b9f756a9f4cc58675 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 8.1E-158 T 10-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2204 c454813f1988067b9f756a9f4cc58675 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 10-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2379 782176a66eeec1be9594f31707d8d30c 1146 PRINTS PR00344 Bacterial sensor protein C-terminal signature 991 1004 6.7E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2379 782176a66eeec1be9594f31707d8d30c 1146 PRINTS PR00344 Bacterial sensor protein C-terminal signature 934 948 6.7E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2379 782176a66eeec1be9594f31707d8d30c 1146 PRINTS PR00344 Bacterial sensor protein C-terminal signature 952 962 6.7E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2379 782176a66eeec1be9594f31707d8d30c 1146 PRINTS PR00344 Bacterial sensor protein C-terminal signature 967 985 6.7E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2379 782176a66eeec1be9594f31707d8d30c 1146 Pfam PF12860 PAS fold 635 749 1.7E-43 T 10-10-2018 VF_2379 782176a66eeec1be9594f31707d8d30c 1146 Gene3D G3DSA:3.40.50.2300 1023 1146 8.8E-17 T 10-10-2018 VF_2379 782176a66eeec1be9594f31707d8d30c 1146 Pfam PF00072 Response regulator receiver domain 1029 1140 3.1E-11 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_2379 782176a66eeec1be9594f31707d8d30c 1146 SUPERFAMILY SSF55785 627 742 5.86E-8 T 10-10-2018 IPR035965 PAS domain superfamily VF_2379 782176a66eeec1be9594f31707d8d30c 1146 SMART SM00448 1027 1140 2.6E-12 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_2379 782176a66eeec1be9594f31707d8d30c 1146 SMART SM00387 898 1007 2.7E-29 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_2379 782176a66eeec1be9594f31707d8d30c 1146 Gene3D G3DSA:1.20.1730.10 34 513 9.3E-9 T 10-10-2018 IPR038377 Sodium/glucose symporter superfamily VF_2379 782176a66eeec1be9594f31707d8d30c 1146 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 899 1004 3.9E-18 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_2379 782176a66eeec1be9594f31707d8d30c 1146 SUPERFAMILY SSF55874 844 1003 3.54E-38 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2379 782176a66eeec1be9594f31707d8d30c 1146 Gene3D G3DSA:3.30.450.20 617 747 1.6E-12 T 10-10-2018 VF_2379 782176a66eeec1be9594f31707d8d30c 1146 Gene3D G3DSA:1.10.287.130 748 852 7.7E-14 T 10-10-2018 VF_2379 782176a66eeec1be9594f31707d8d30c 1146 SMART SM00388 789 854 7.2E-11 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_2379 782176a66eeec1be9594f31707d8d30c 1146 SUPERFAMILY SSF47384 773 855 1.82E-13 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_2379 782176a66eeec1be9594f31707d8d30c 1146 Pfam PF00512 His Kinase A (phospho-acceptor) domain 789 854 8.8E-10 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_2379 782176a66eeec1be9594f31707d8d30c 1146 SUPERFAMILY SSF52172 1025 1145 1.85E-18 T 10-10-2018 IPR011006 CheY-like superfamily VF_2379 782176a66eeec1be9594f31707d8d30c 1146 Gene3D G3DSA:3.30.565.10 861 1008 6.2E-34 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1012 da9b5ae01a9e23d6e643b913ccd93344 298 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 155 176 - T 10-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 VF_1012 da9b5ae01a9e23d6e643b913ccd93344 298 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 6 196 1.4E-54 T 10-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 VF_1012 da9b5ae01a9e23d6e643b913ccd93344 298 Gene3D G3DSA:3.40.190.10 102 191 6.3E-70 T 10-10-2018 VF_1012 da9b5ae01a9e23d6e643b913ccd93344 298 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 5 298 35.188 T 10-10-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 VF_1012 da9b5ae01a9e23d6e643b913ccd93344 298 Gene3D G3DSA:3.30.70.120 225 298 1.3E-32 T 10-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VF_1012 da9b5ae01a9e23d6e643b913ccd93344 298 SUPERFAMILY SSF53850 5 222 5.0E-67 T 10-10-2018 VF_1012 da9b5ae01a9e23d6e643b913ccd93344 298 Pfam PF08029 HisG, C-terminal domain 222 295 9.4E-24 T 10-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 VF_1012 da9b5ae01a9e23d6e643b913ccd93344 298 SUPERFAMILY SSF54913 225 297 5.34E-21 T 10-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta VF_1012 da9b5ae01a9e23d6e643b913ccd93344 298 Pfam PF01634 ATP phosphoribosyltransferase 53 218 2.5E-44 T 10-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 VF_1012 da9b5ae01a9e23d6e643b913ccd93344 298 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 202 297 3.9E-30 T 10-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 VF_1012 da9b5ae01a9e23d6e643b913ccd93344 298 Gene3D G3DSA:3.40.190.10 6 220 6.3E-70 T 10-10-2018 VF_2349 8aea38c092c283926fa7c743fb427c7c 156 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 8 143 5.3E-59 T 10-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VF_2349 8aea38c092c283926fa7c743fb427c7c 156 Gene3D G3DSA:3.10.420.10 1 152 7.5E-58 T 10-10-2018 IPR035958 SecB-like superfamily VF_2349 8aea38c092c283926fa7c743fb427c7c 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 98 120 6.4E-39 T 10-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VF_2349 8aea38c092c283926fa7c743fb427c7c 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 14 31 6.4E-39 T 10-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VF_2349 8aea38c092c283926fa7c743fb427c7c 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 124 142 6.4E-39 T 10-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VF_2349 8aea38c092c283926fa7c743fb427c7c 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 74 94 6.4E-39 T 10-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VF_2349 8aea38c092c283926fa7c743fb427c7c 156 SUPERFAMILY SSF54611 4 142 4.8E-52 T 10-10-2018 IPR035958 SecB-like superfamily VF_2349 8aea38c092c283926fa7c743fb427c7c 156 Hamap MF_00821 Protein-export protein SecB [secB]. 1 146 32.179 T 10-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VF_2349 8aea38c092c283926fa7c743fb427c7c 156 Pfam PF02556 Preprotein translocase subunit SecB 6 144 1.0E-55 T 10-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VF_A0034 bd9aefd17ef70e1186b3045067d93e91 298 SUPERFAMILY SSF53850 92 295 2.72E-32 T 10-10-2018 VF_A0034 bd9aefd17ef70e1186b3045067d93e91 298 Gene3D G3DSA:3.40.190.10 94 291 3.3E-40 T 10-10-2018 VF_A0034 bd9aefd17ef70e1186b3045067d93e91 298 Gene3D G3DSA:3.40.190.10 169 267 3.3E-40 T 10-10-2018 VF_A0034 bd9aefd17ef70e1186b3045067d93e91 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.6E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0034 bd9aefd17ef70e1186b3045067d93e91 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.6E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0034 bd9aefd17ef70e1186b3045067d93e91 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.6E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0034 bd9aefd17ef70e1186b3045067d93e91 298 SUPERFAMILY SSF46785 2 85 1.09E-22 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0034 bd9aefd17ef70e1186b3045067d93e91 298 Pfam PF03466 LysR substrate binding domain 111 294 3.0E-18 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0034 bd9aefd17ef70e1186b3045067d93e91 298 Gene3D G3DSA:1.10.10.10 1 87 1.9E-26 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0034 bd9aefd17ef70e1186b3045067d93e91 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 1.6E-18 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0487 561981d31a76b3e7f21abc650ba71656 135 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 98 4.0E-47 T 10-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 VF_0487 561981d31a76b3e7f21abc650ba71656 135 Gene3D G3DSA:3.30.300.20 1 106 3.4E-34 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta VF_0487 561981d31a76b3e7f21abc650ba71656 135 SUPERFAMILY SSF89919 2 105 1.96E-31 T 10-10-2018 IPR023799 Ribosome-binding factor A domain superfamily VF_0487 561981d31a76b3e7f21abc650ba71656 135 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 116 1.3E-35 T 10-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 VF_0487 561981d31a76b3e7f21abc650ba71656 135 ProSitePatterns PS01319 Ribosome-binding factor A signature. 77 98 - T 10-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 VF_0487 561981d31a76b3e7f21abc650ba71656 135 Pfam PF02033 Ribosome-binding factor A 7 110 2.7E-30 T 10-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 VF_0487 561981d31a76b3e7f21abc650ba71656 135 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 6 111 25.628 T 10-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 VF_A0152 0cbae8e49eeb80c7731fbf225eea0996 483 Gene3D G3DSA:3.30.70.270 315 482 4.0E-52 T 10-10-2018 VF_A0152 0cbae8e49eeb80c7731fbf225eea0996 483 SMART SM00267 310 482 8.1E-45 T 10-10-2018 IPR000160 GGDEF domain VF_A0152 0cbae8e49eeb80c7731fbf225eea0996 483 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 319 482 6.2E-43 T 10-10-2018 IPR000160 GGDEF domain VF_A0152 0cbae8e49eeb80c7731fbf225eea0996 483 Pfam PF00990 Diguanylate cyclase, GGDEF domain 321 478 6.4E-40 T 10-10-2018 IPR000160 GGDEF domain VF_A0152 0cbae8e49eeb80c7731fbf225eea0996 483 SUPERFAMILY SSF55073 326 481 9.42E-46 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0152 0cbae8e49eeb80c7731fbf225eea0996 483 Gene3D G3DSA:3.30.450.20 28 178 1.1E-7 T 10-10-2018 VF_0058 74edbfca3644b0ef91d8ea3747360086 419 SUPERFAMILY SSF68912 1 46 1.73E-11 T 10-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily VF_0058 74edbfca3644b0ef91d8ea3747360086 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 4.3E-22 T 10-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_0058 74edbfca3644b0ef91d8ea3747360086 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 4.0E-16 T 10-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 VF_0058 74edbfca3644b0ef91d8ea3747360086 419 SMART SM00357 52 118 2.8E-18 T 10-10-2018 IPR011129 Cold shock domain GO:0003676 VF_0058 74edbfca3644b0ef91d8ea3747360086 419 SUPERFAMILY SSF52540 90 371 1.69E-67 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0058 74edbfca3644b0ef91d8ea3747360086 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 251.845 T 10-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 VF_0058 74edbfca3644b0ef91d8ea3747360086 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 8.3E-32 T 10-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 VF_0058 74edbfca3644b0ef91d8ea3747360086 419 Gene3D G3DSA:3.40.50.300 130 417 1.3E-133 T 10-10-2018 VF_0058 74edbfca3644b0ef91d8ea3747360086 419 SUPERFAMILY SSF50249 48 125 2.61E-29 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_0058 74edbfca3644b0ef91d8ea3747360086 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 6.2E-220 T 10-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 VF_0058 74edbfca3644b0ef91d8ea3747360086 419 Gene3D G3DSA:1.10.720.10 1 47 4.4E-22 T 10-10-2018 VF_0058 74edbfca3644b0ef91d8ea3747360086 419 SMART SM00382 170 355 5.5E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0058 74edbfca3644b0ef91d8ea3747360086 419 Gene3D G3DSA:2.40.50.140 48 117 4.0E-35 T 10-10-2018 VF_0058 74edbfca3644b0ef91d8ea3747360086 419 SMART SM00959 5 47 6.0E-17 T 10-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 VF_A0556 f65ed07f0847b4c8107c1b8ae7ec20b0 266 SUPERFAMILY SSF46689 215 263 4.26E-12 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0556 f65ed07f0847b4c8107c1b8ae7ec20b0 266 SMART SM00342 179 261 2.8E-23 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0556 f65ed07f0847b4c8107c1b8ae7ec20b0 266 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 215 257 - T 10-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VF_A0556 f65ed07f0847b4c8107c1b8ae7ec20b0 266 Gene3D G3DSA:1.10.10.60 162 265 2.1E-26 T 10-10-2018 VF_A0556 f65ed07f0847b4c8107c1b8ae7ec20b0 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 230 245 2.1E-6 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_A0556 f65ed07f0847b4c8107c1b8ae7ec20b0 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 261 2.1E-6 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_A0556 f65ed07f0847b4c8107c1b8ae7ec20b0 266 Pfam PF12833 Helix-turn-helix domain 186 262 2.0E-17 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0135 4176079ca3e4470a9415f5c14a642f58 620 Pfam PF08378 Nuclease-related domain 17 110 9.6E-12 T 10-10-2018 IPR011528 Nuclease-related domain, NERD VF_A0135 4176079ca3e4470a9415f5c14a642f58 620 SUPERFAMILY SSF52540 235 607 9.53E-59 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0135 4176079ca3e4470a9415f5c14a642f58 620 Pfam PF13361 UvrD-like helicase C-terminal domain 538 603 1.3E-10 T 10-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 VF_A0135 4176079ca3e4470a9415f5c14a642f58 620 Gene3D G3DSA:3.40.50.300 430 617 1.6E-32 T 10-10-2018 VF_A0135 4176079ca3e4470a9415f5c14a642f58 620 Gene3D G3DSA:3.40.50.300 236 417 4.0E-23 T 10-10-2018 VF_A0135 4176079ca3e4470a9415f5c14a642f58 620 Pfam PF13245 AAA domain 249 405 1.0E-7 T 10-10-2018 VF_A0135 4176079ca3e4470a9415f5c14a642f58 620 Pfam PF13361 UvrD-like helicase C-terminal domain 427 532 1.3E-8 T 10-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 VF_0465 e3ca0b9d8d0b0b3f703eca467f033f03 519 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 5 509 2.3E-136 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VF_0465 e3ca0b9d8d0b0b3f703eca467f033f03 519 Pfam PF03023 MviN-like protein 30 480 6.0E-144 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VF_0465 e3ca0b9d8d0b0b3f703eca467f033f03 519 PRINTS PR01806 Virulence factor MviN signature 142 166 4.7E-77 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VF_0465 e3ca0b9d8d0b0b3f703eca467f033f03 519 PRINTS PR01806 Virulence factor MviN signature 54 70 4.7E-77 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VF_0465 e3ca0b9d8d0b0b3f703eca467f033f03 519 PRINTS PR01806 Virulence factor MviN signature 35 54 4.7E-77 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VF_0465 e3ca0b9d8d0b0b3f703eca467f033f03 519 PRINTS PR01806 Virulence factor MviN signature 166 187 4.7E-77 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VF_0465 e3ca0b9d8d0b0b3f703eca467f033f03 519 PRINTS PR01806 Virulence factor MviN signature 268 294 4.7E-77 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VF_0465 e3ca0b9d8d0b0b3f703eca467f033f03 519 PRINTS PR01806 Virulence factor MviN signature 366 385 4.7E-77 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VF_0465 e3ca0b9d8d0b0b3f703eca467f033f03 519 PRINTS PR01806 Virulence factor MviN signature 418 435 4.7E-77 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VF_0465 e3ca0b9d8d0b0b3f703eca467f033f03 519 PIRSF PIRSF002869 1 517 3.1E-150 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VF_0465 e3ca0b9d8d0b0b3f703eca467f033f03 519 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 5 476 19.901 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VF_A0798 38c17e179a0db5cf5b1a344fa272f202 514 Gene3D G3DSA:1.20.58.370 2 95 1.1E-33 T 10-10-2018 IPR035277 MalF, N-terminal VF_A0798 38c17e179a0db5cf5b1a344fa272f202 514 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 298 502 7.4E-18 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_A0798 38c17e179a0db5cf5b1a344fa272f202 514 Gene3D G3DSA:2.40.430.10 118 204 1.5E-47 T 10-10-2018 VF_A0798 38c17e179a0db5cf5b1a344fa272f202 514 Gene3D G3DSA:3.10.650.10 98 268 1.5E-47 T 10-10-2018 VF_A0798 38c17e179a0db5cf5b1a344fa272f202 514 Gene3D G3DSA:1.10.3720.10 270 512 4.2E-70 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0798 38c17e179a0db5cf5b1a344fa272f202 514 SUPERFAMILY SSF160964 14 260 2.09E-74 T 10-10-2018 VF_A0798 38c17e179a0db5cf5b1a344fa272f202 514 Pfam PF14785 Maltose transport system permease protein MalF P2 domain 101 260 5.0E-54 T 10-10-2018 IPR029345 Maltose transport system permease protein MalF, P2 domain VF_A0798 38c17e179a0db5cf5b1a344fa272f202 514 SUPERFAMILY SSF161098 263 503 6.8E-58 T 10-10-2018 IPR035906 MetI-like superfamily VF_A1121 3b28511664d266a72dde76aeaaae71fe 141 SUPERFAMILY SSF46785 5 140 1.16E-36 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A1121 3b28511664d266a72dde76aeaaae71fe 141 Pfam PF01047 MarR family 34 91 8.5E-18 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A1121 3b28511664d266a72dde76aeaaae71fe 141 SMART SM00347 27 127 2.8E-30 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A1121 3b28511664d266a72dde76aeaaae71fe 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 8.7E-16 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A1121 3b28511664d266a72dde76aeaaae71fe 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 8.7E-16 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A1121 3b28511664d266a72dde76aeaaae71fe 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 8.7E-16 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A1121 3b28511664d266a72dde76aeaaae71fe 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 8.7E-16 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A1121 3b28511664d266a72dde76aeaaae71fe 141 Gene3D G3DSA:1.10.10.10 1 141 4.8E-39 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1227 e767ad6ccc922f23c0ab578fb4c5e246 178 Pfam PF06228 Haem utilisation ChuX/HutX 36 173 5.4E-33 T 10-10-2018 IPR010413 Heme utilization carrier protein HutX-like VF_1227 e767ad6ccc922f23c0ab578fb4c5e246 178 TIGRFAM TIGR04108 HutX: putative heme utilization carrier protein HutX 21 173 1.2E-64 T 10-10-2018 IPR010413 Heme utilization carrier protein HutX-like VF_1227 e767ad6ccc922f23c0ab578fb4c5e246 178 PIRSF PIRSF030840 1 178 1.8E-83 T 10-10-2018 IPR010413 Heme utilization carrier protein HutX-like VF_1227 e767ad6ccc922f23c0ab578fb4c5e246 178 SUPERFAMILY SSF144064 18 177 7.46E-54 T 10-10-2018 VF_1227 e767ad6ccc922f23c0ab578fb4c5e246 178 Gene3D G3DSA:3.40.1570.10 4 178 1.0E-55 T 10-10-2018 VF_A0091 ebb012c6531053c4d02e08b9a14ae61f 615 SUPERFAMILY SSF55486 3 550 8.96E-77 T 10-10-2018 VF_A0091 ebb012c6531053c4d02e08b9a14ae61f 615 Pfam PF01432 Peptidase family M3 283 549 9.2E-17 T 10-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 VF_A0091 ebb012c6531053c4d02e08b9a14ae61f 615 Gene3D G3DSA:3.40.390.10 283 380 8.3E-19 T 10-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 VF_A0091 ebb012c6531053c4d02e08b9a14ae61f 615 Gene3D G3DSA:1.10.1370.10 85 243 2.9E-6 T 10-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 VF_A0091 ebb012c6531053c4d02e08b9a14ae61f 615 Gene3D G3DSA:1.10.1370.10 381 542 8.3E-19 T 10-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 VF_2421 95949e5aad29a83a49dfd0ace5ef8bdd 181 SUPERFAMILY SSF50104 125 180 4.76E-20 T 10-10-2018 IPR008991 Translation protein SH3-like domain superfamily VF_2421 95949e5aad29a83a49dfd0ace5ef8bdd 181 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 9 180 7.7E-71 T 10-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VF_2421 95949e5aad29a83a49dfd0ace5ef8bdd 181 Pfam PF02357 Transcription termination factor nusG 7 112 1.6E-26 T 10-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VF_2421 95949e5aad29a83a49dfd0ace5ef8bdd 181 SMART SM00739 127 154 3.2E-6 T 10-10-2018 IPR005824 KOW VF_2421 95949e5aad29a83a49dfd0ace5ef8bdd 181 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 6 181 25.522 T 10-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VF_2421 95949e5aad29a83a49dfd0ace5ef8bdd 181 SUPERFAMILY SSF82679 6 117 8.76E-40 T 10-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VF_2421 95949e5aad29a83a49dfd0ace5ef8bdd 181 Gene3D G3DSA:2.30.30.30 124 180 7.6E-27 T 10-10-2018 IPR014722 Ribosomal protein L2, domain 2 VF_2421 95949e5aad29a83a49dfd0ace5ef8bdd 181 Pfam PF00467 KOW motif 131 162 6.0E-8 T 10-10-2018 IPR005824 KOW VF_2421 95949e5aad29a83a49dfd0ace5ef8bdd 181 PRINTS PR00338 Transcription termination factor NUSG signature 139 154 6.7E-22 T 10-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VF_2421 95949e5aad29a83a49dfd0ace5ef8bdd 181 PRINTS PR00338 Transcription termination factor NUSG signature 61 73 6.7E-22 T 10-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VF_2421 95949e5aad29a83a49dfd0ace5ef8bdd 181 PRINTS PR00338 Transcription termination factor NUSG signature 157 173 6.7E-22 T 10-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VF_2421 95949e5aad29a83a49dfd0ace5ef8bdd 181 Gene3D G3DSA:3.30.70.940 1 123 2.8E-47 T 10-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VF_2421 95949e5aad29a83a49dfd0ace5ef8bdd 181 SMART SM00738 6 115 3.3E-49 T 10-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VF_2421 95949e5aad29a83a49dfd0ace5ef8bdd 181 ProSitePatterns PS01014 Transcription termination factor nusG signature. 164 173 - T 10-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site VF_1780 c11ffd0c3172596140543c110ca14478 257 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 55 62 8.1E-5 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_1780 c11ffd0c3172596140543c110ca14478 257 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 120 139 8.1E-5 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_1780 c11ffd0c3172596140543c110ca14478 257 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 218 226 8.1E-5 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_1780 c11ffd0c3172596140543c110ca14478 257 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 157 168 8.1E-5 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_1780 c11ffd0c3172596140543c110ca14478 257 SUPERFAMILY SSF52343 115 257 1.07E-32 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_1780 c11ffd0c3172596140543c110ca14478 257 SUPERFAMILY SSF63380 8 103 5.38E-16 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VF_1780 c11ffd0c3172596140543c110ca14478 257 Gene3D G3DSA:2.40.30.10 2 105 1.5E-21 T 10-10-2018 VF_1780 c11ffd0c3172596140543c110ca14478 257 Pfam PF00175 Oxidoreductase NAD-binding domain 121 232 5.1E-15 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VF_1780 c11ffd0c3172596140543c110ca14478 257 Gene3D G3DSA:3.40.50.80 106 257 2.0E-37 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_2089 27639a18f01c163a2a59f719899dbd8c 597 Gene3D G3DSA:3.30.70.2570 479 553 4.6E-32 T 10-10-2018 IPR038363 LepA, C-terminal domain superfamily VF_2089 27639a18f01c163a2a59f719899dbd8c 597 Pfam PF00679 Elongation factor G C-terminus 399 480 8.8E-21 T 10-10-2018 IPR000640 Elongation factor EFG, domain V-like VF_2089 27639a18f01c163a2a59f719899dbd8c 597 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 176 7.6E-17 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VF_2089 27639a18f01c163a2a59f719899dbd8c 597 TIGRFAM TIGR01393 lepA: elongation factor 4 2 594 7.2E-301 T 10-10-2018 IPR006297 Elongation factor 4 GO:0005525 VF_2089 27639a18f01c163a2a59f719899dbd8c 597 PRINTS PR00315 GTP-binding elongation factor signature 6 19 3.8E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_2089 27639a18f01c163a2a59f719899dbd8c 597 PRINTS PR00315 GTP-binding elongation factor signature 90 101 3.8E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_2089 27639a18f01c163a2a59f719899dbd8c 597 PRINTS PR00315 GTP-binding elongation factor signature 126 135 3.8E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_2089 27639a18f01c163a2a59f719899dbd8c 597 PRINTS PR00315 GTP-binding elongation factor signature 74 84 3.8E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_2089 27639a18f01c163a2a59f719899dbd8c 597 PRINTS PR00315 GTP-binding elongation factor signature 49 57 3.8E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_2089 27639a18f01c163a2a59f719899dbd8c 597 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 10-10-2018 IPR031157 Tr-type G domain, conserved site VF_2089 27639a18f01c163a2a59f719899dbd8c 597 SUPERFAMILY SSF50447 165 288 2.7E-29 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VF_2089 27639a18f01c163a2a59f719899dbd8c 597 Pfam PF06421 GTP-binding protein LepA C-terminus 487 592 1.2E-48 T 10-10-2018 IPR013842 GTP-binding protein LepA, C-terminal VF_2089 27639a18f01c163a2a59f719899dbd8c 597 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 3.3E-53 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_2089 27639a18f01c163a2a59f719899dbd8c 597 Gene3D G3DSA:3.30.70.3380 368 478 4.8E-40 T 10-10-2018 VF_2089 27639a18f01c163a2a59f719899dbd8c 597 SUPERFAMILY SSF54980 292 370 1.62E-18 T 10-10-2018 IPR035647 EF-G domain III/V-like VF_2089 27639a18f01c163a2a59f719899dbd8c 597 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 306.324 T 10-10-2018 IPR006297 Elongation factor 4 GO:0005525 VF_2089 27639a18f01c163a2a59f719899dbd8c 597 SUPERFAMILY SSF52540 2 205 2.61E-56 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2089 27639a18f01c163a2a59f719899dbd8c 597 SMART SM00838 398 486 9.8E-4 T 10-10-2018 IPR000640 Elongation factor EFG, domain V-like VF_2089 27639a18f01c163a2a59f719899dbd8c 597 Pfam PF03144 Elongation factor Tu domain 2 205 275 2.9E-9 T 10-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VF_2089 27639a18f01c163a2a59f719899dbd8c 597 SUPERFAMILY SSF54980 399 493 2.4E-25 T 10-10-2018 IPR035647 EF-G domain III/V-like VF_2089 27639a18f01c163a2a59f719899dbd8c 597 Gene3D G3DSA:3.40.50.300 1 185 2.7E-71 T 10-10-2018 VF_2089 27639a18f01c163a2a59f719899dbd8c 597 Gene3D G3DSA:3.30.70.870 286 367 9.0E-36 T 10-10-2018 VF_2089 27639a18f01c163a2a59f719899dbd8c 597 Gene3D G3DSA:2.40.30.10 186 285 3.4E-33 T 10-10-2018 VF_A0030 e7abab6fe4b9c9a8dbbd19feb60005aa 285 SUPERFAMILY SSF103481 32 131 7.06E-17 T 10-10-2018 VF_A0030 e7abab6fe4b9c9a8dbbd19feb60005aa 285 SUPERFAMILY SSF103481 176 275 4.45E-15 T 10-10-2018 VF_A0030 e7abab6fe4b9c9a8dbbd19feb60005aa 285 Pfam PF00892 EamA-like transporter family 2 127 2.9E-14 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_A0030 e7abab6fe4b9c9a8dbbd19feb60005aa 285 Pfam PF00892 EamA-like transporter family 143 272 1.2E-9 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_2344 5909d6d450d66ec845b7b218bab8f396 462 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 354 461 1.9E-19 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_2344 5909d6d450d66ec845b7b218bab8f396 462 SMART SM00387 353 462 3.3E-26 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_2344 5909d6d450d66ec845b7b218bab8f396 462 Pfam PF00672 HAMP domain 194 242 5.2E-8 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_2344 5909d6d450d66ec845b7b218bab8f396 462 Pfam PF16527 Two-component sensor protein CpxA, periplasmic domain 41 171 1.2E-49 T 10-10-2018 IPR032404 Two-component sensor protein CpxA, periplasmic domain VF_2344 5909d6d450d66ec845b7b218bab8f396 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 402 1.5E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2344 5909d6d450d66ec845b7b218bab8f396 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 1.5E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2344 5909d6d450d66ec845b7b218bab8f396 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 460 1.5E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2344 5909d6d450d66ec845b7b218bab8f396 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 416 1.5E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2344 5909d6d450d66ec845b7b218bab8f396 462 Gene3D G3DSA:1.10.287.130 197 310 3.2E-34 T 10-10-2018 VF_2344 5909d6d450d66ec845b7b218bab8f396 462 SMART SM00388 247 309 9.8E-10 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_2344 5909d6d450d66ec845b7b218bab8f396 462 SUPERFAMILY SSF55874 299 461 1.57E-33 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2344 5909d6d450d66ec845b7b218bab8f396 462 SMART SM00304 193 246 8.8E-7 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_2344 5909d6d450d66ec845b7b218bab8f396 462 SUPERFAMILY SSF47384 232 308 8.04E-13 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_2344 5909d6d450d66ec845b7b218bab8f396 462 Pfam PF00512 His Kinase A (phospho-acceptor) domain 249 307 6.1E-11 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_2344 5909d6d450d66ec845b7b218bab8f396 462 Gene3D G3DSA:3.30.450.210 36 160 3.8E-41 T 10-10-2018 IPR038515 CpxA, periplasmic domain superfamily VF_2344 5909d6d450d66ec845b7b218bab8f396 462 Gene3D G3DSA:3.30.565.10 313 462 2.0E-33 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2344 5909d6d450d66ec845b7b218bab8f396 462 SUPERFAMILY SSF158472 194 245 6.93E-5 T 10-10-2018 VF_1502 1b2b55af1d4eb4d0393b3875ba6bc755 90 Gene3D G3DSA:3.30.70.100 1 89 3.9E-29 T 10-10-2018 VF_1502 1b2b55af1d4eb4d0393b3875ba6bc755 90 Pfam PF00708 Acylphosphatase 8 88 1.4E-26 T 10-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 VF_1502 1b2b55af1d4eb4d0393b3875ba6bc755 90 SUPERFAMILY SSF54975 4 89 1.55E-27 T 10-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 VF_1502 1b2b55af1d4eb4d0393b3875ba6bc755 90 ProSitePatterns PS00151 Acylphosphatase signature 2. 34 50 - T 10-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 VF_1897 76490eba2c1f86db6f8c9e9808d4743b 169 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 85 97 - T 10-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 VF_1897 76490eba2c1f86db6f8c9e9808d4743b 169 Gene3D G3DSA:2.70.70.10 10 169 8.7E-61 T 10-10-2018 IPR011055 Duplicated hybrid motif VF_1897 76490eba2c1f86db6f8c9e9808d4743b 169 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 23 143 5.7E-50 T 10-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 VF_1897 76490eba2c1f86db6f8c9e9808d4743b 169 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 22 146 5.1E-49 T 10-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 VF_1897 76490eba2c1f86db6f8c9e9808d4743b 169 SUPERFAMILY SSF51261 18 166 8.72E-55 T 10-10-2018 IPR011055 Duplicated hybrid motif VF_0010 ab048526c59667b40e9686c5697f2450 366 Gene3D G3DSA:3.10.150.10 248 366 1.7E-39 T 10-10-2018 VF_0010 ab048526c59667b40e9686c5697f2450 366 SMART SM00480 17 362 1.2E-157 T 10-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 VF_0010 ab048526c59667b40e9686c5697f2450 366 PIRSF PIRSF000804 1 366 4.7E-115 T 10-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 VF_0010 ab048526c59667b40e9686c5697f2450 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 4.0E-112 T 10-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 VF_0010 ab048526c59667b40e9686c5697f2450 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 245 365 7.9E-42 T 10-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 VF_0010 ab048526c59667b40e9686c5697f2450 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 119 4.2E-38 T 10-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 VF_0010 ab048526c59667b40e9686c5697f2450 366 Gene3D G3DSA:3.10.150.10 1 122 2.6E-42 T 10-10-2018 VF_0010 ab048526c59667b40e9686c5697f2450 366 SUPERFAMILY SSF55979 125 244 9.71E-30 T 10-10-2018 VF_0010 ab048526c59667b40e9686c5697f2450 366 SUPERFAMILY SSF55979 245 366 1.03E-36 T 10-10-2018 VF_0010 ab048526c59667b40e9686c5697f2450 366 Gene3D G3DSA:3.10.150.10 124 247 2.0E-37 T 10-10-2018 VF_0010 ab048526c59667b40e9686c5697f2450 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 129 243 7.8E-38 T 10-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 VF_0010 ab048526c59667b40e9686c5697f2450 366 SUPERFAMILY SSF55979 1 118 1.11E-29 T 10-10-2018 VF_A0998 8ab3766bae4654ab5702f24fb4231305 276 SUPERFAMILY SSF51182 1 260 1.5E-106 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_A0998 8ab3766bae4654ab5702f24fb4231305 276 Gene3D G3DSA:2.60.120.520 30 142 6.6E-121 T 10-10-2018 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 VF_A0998 8ab3766bae4654ab5702f24fb4231305 276 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 1 276 55.323 T 10-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 VF_A0998 8ab3766bae4654ab5702f24fb4231305 276 Gene3D G3DSA:2.60.120.10 10 262 6.6E-121 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_A0998 8ab3766bae4654ab5702f24fb4231305 276 PIRSF PIRSF006625 1 276 5.9E-134 T 10-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 VF_A0998 8ab3766bae4654ab5702f24fb4231305 276 Pfam PF04962 KduI/IolB family 32 271 2.8E-37 T 10-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 VF_0023 0463e1ddc947a9c01f1e30f3f3fc7ce6 326 SUPERFAMILY SSF50129 2 145 5.35E-43 T 10-10-2018 IPR011032 GroES-like superfamily VF_0023 0463e1ddc947a9c01f1e30f3f3fc7ce6 326 Gene3D G3DSA:3.90.180.10 17 325 2.8E-122 T 10-10-2018 VF_0023 0463e1ddc947a9c01f1e30f3f3fc7ce6 326 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 87 2.1E-4 T 10-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VF_0023 0463e1ddc947a9c01f1e30f3f3fc7ce6 326 SUPERFAMILY SSF51735 116 291 8.2E-36 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0023 0463e1ddc947a9c01f1e30f3f3fc7ce6 326 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 3 326 1.1E-136 T 10-10-2018 IPR014188 Acrylyl-CoA reductase AcuI VF_0023 0463e1ddc947a9c01f1e30f3f3fc7ce6 326 Pfam PF00107 Zinc-binding dehydrogenase 159 280 4.3E-14 T 10-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 VF_0023 0463e1ddc947a9c01f1e30f3f3fc7ce6 326 Gene3D G3DSA:3.40.50.720 126 294 2.8E-122 T 10-10-2018 VF_0023 0463e1ddc947a9c01f1e30f3f3fc7ce6 326 SMART SM00829 10 324 1.8E-4 T 10-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VF_0542 5a218a65a6b7fe168d0654fd4054da39 950 SUPERFAMILY SSF63411 518 720 8.0E-42 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VF_0542 5a218a65a6b7fe168d0654fd4054da39 950 SUPERFAMILY SSF63411 739 940 2.71E-39 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VF_0542 5a218a65a6b7fe168d0654fd4054da39 950 SUPERFAMILY SSF63411 275 468 9.09E-34 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VF_0542 5a218a65a6b7fe168d0654fd4054da39 950 Pfam PF05193 Peptidase M16 inactive domain 218 392 2.4E-31 T 10-10-2018 IPR007863 Peptidase M16, C-terminal VF_0542 5a218a65a6b7fe168d0654fd4054da39 950 Pfam PF05193 Peptidase M16 inactive domain 685 856 1.2E-21 T 10-10-2018 IPR007863 Peptidase M16, C-terminal VF_0542 5a218a65a6b7fe168d0654fd4054da39 950 Gene3D G3DSA:3.30.830.10 523 729 3.7E-40 T 10-10-2018 VF_0542 5a218a65a6b7fe168d0654fd4054da39 950 Gene3D G3DSA:3.30.830.10 738 932 3.9E-37 T 10-10-2018 VF_0542 5a218a65a6b7fe168d0654fd4054da39 950 Gene3D G3DSA:3.30.830.10 274 472 1.7E-34 T 10-10-2018 VF_0542 5a218a65a6b7fe168d0654fd4054da39 950 Pfam PF00675 Insulinase (Peptidase family M16) 61 152 2.3E-17 T 10-10-2018 IPR011765 Peptidase M16, N-terminal VF_0542 5a218a65a6b7fe168d0654fd4054da39 950 Pfam PF00675 Insulinase (Peptidase family M16) 539 641 6.8E-12 T 10-10-2018 IPR011765 Peptidase M16, N-terminal VF_0542 5a218a65a6b7fe168d0654fd4054da39 950 Gene3D G3DSA:3.30.830.10 45 269 1.9E-65 T 10-10-2018 VF_0542 5a218a65a6b7fe168d0654fd4054da39 950 SUPERFAMILY SSF63411 48 257 6.83E-55 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VF_A0577 4720943ce722826654bfc8b87d98c347 94 Pfam PF10734 Protein of unknown function (DUF2523) 11 91 2.8E-15 T 10-10-2018 IPR019670 Protein of unkown function DUF2523 VF_A0577 4720943ce722826654bfc8b87d98c347 94 ProDom PD065768 ENTEROTOXIN ACE ACCESSORY TRANSMEMBRANE MEMBRANE TOXIN CHOLERA 1 94 4.0E-47 T 10-10-2018 IPR020495 Accessory cholera enterotoxin, Ace VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 87 2.9E-19 T 10-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 Pfam PF00750 tRNA synthetases class I (R) 98 447 1.7E-162 T 10-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 Gene3D G3DSA:1.10.730.10 455 577 2.4E-35 T 10-10-2018 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 Gene3D G3DSA:3.30.1360.70 1 106 2.0E-33 T 10-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 SMART SM01016 5 87 1.6E-27 T 10-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 SUPERFAMILY SSF52374 110 454 3.11E-93 T 10-10-2018 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 122 133 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 SMART SM00836 461 577 1.7E-40 T 10-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 SUPERFAMILY SSF55190 2 101 6.93E-22 T 10-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 SUPERFAMILY SSF47323 455 577 1.18E-35 T 10-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 577 28.16 T 10-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 Pfam PF05746 DALR anticodon binding domain 461 577 5.4E-36 T 10-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 153 166 3.5E-25 T 10-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 114 129 3.5E-25 T 10-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 129 145 3.5E-25 T 10-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 304 325 3.5E-25 T 10-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 3 577 3.6E-199 T 10-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VF_0839 b99142a9d6ea4cd911043e3d38154fd2 577 Gene3D G3DSA:3.40.50.620 107 454 2.0E-108 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0605 6d21dd301e4d8e743df36d0201e7f08e 469 SUPERFAMILY SSF51445 1 467 2.11E-163 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_0605 6d21dd301e4d8e743df36d0201e7f08e 469 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 7 21 - T 10-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site VF_0605 6d21dd301e4d8e743df36d0201e7f08e 469 Gene3D G3DSA:3.20.20.80 1 469 4.5E-172 T 10-10-2018 VF_0605 6d21dd301e4d8e743df36d0201e7f08e 469 Pfam PF00232 Glycosyl hydrolase family 1 2 466 1.8E-164 T 10-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VF_0605 6d21dd301e4d8e743df36d0201e7f08e 469 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 370 378 - T 10-10-2018 IPR018120 Glycoside hydrolase family 1, active site VF_0605 6d21dd301e4d8e743df36d0201e7f08e 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 435 447 6.3E-18 T 10-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VF_0605 6d21dd301e4d8e743df36d0201e7f08e 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 370 378 6.3E-18 T 10-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VF_0605 6d21dd301e4d8e743df36d0201e7f08e 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 288 302 6.3E-18 T 10-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VF_0605 6d21dd301e4d8e743df36d0201e7f08e 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 411 428 6.3E-18 T 10-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VF_0605 6d21dd301e4d8e743df36d0201e7f08e 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 390 401 6.3E-18 T 10-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VF_0025 48549a74a1964e96ae46a2db483e4b10 725 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 628 700 4.3E-7 T 10-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VF_0025 48549a74a1964e96ae46a2db483e4b10 725 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 496 592 4.9E-25 T 10-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VF_0025 48549a74a1964e96ae46a2db483e4b10 725 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 714 0.0 T 10-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VF_0025 48549a74a1964e96ae46a2db483e4b10 725 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 715 53.422 T 10-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VF_0025 48549a74a1964e96ae46a2db483e4b10 725 SUPERFAMILY SSF52096 2 303 1.29E-64 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VF_0025 48549a74a1964e96ae46a2db483e4b10 725 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 316 494 4.3E-61 T 10-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VF_0025 48549a74a1964e96ae46a2db483e4b10 725 Gene3D G3DSA:3.90.226.10 1 311 7.9E-89 T 10-10-2018 VF_0025 48549a74a1964e96ae46a2db483e4b10 725 Gene3D G3DSA:1.10.1040.50 497 709 9.0E-72 T 10-10-2018 VF_0025 48549a74a1964e96ae46a2db483e4b10 725 SUPERFAMILY SSF48179 495 607 1.62E-28 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VF_0025 48549a74a1964e96ae46a2db483e4b10 725 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 10-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 VF_0025 48549a74a1964e96ae46a2db483e4b10 725 SUPERFAMILY SSF48179 623 714 2.98E-22 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VF_0025 48549a74a1964e96ae46a2db483e4b10 725 Gene3D G3DSA:3.40.50.720 313 496 7.5E-67 T 10-10-2018 VF_0025 48549a74a1964e96ae46a2db483e4b10 725 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 493 517 - T 10-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VF_0025 48549a74a1964e96ae46a2db483e4b10 725 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 206 1.9E-35 T 10-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 VF_0025 48549a74a1964e96ae46a2db483e4b10 725 SUPERFAMILY SSF51735 314 495 5.75E-57 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 Gene3D G3DSA:3.40.50.740 125 616 2.4E-129 T 10-10-2018 VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 61 111 1.7E-11 T 10-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 Pfam PF01568 Molydopterin dinucleotide binding domain 818 944 9.7E-21 T 10-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 Gene3D G3DSA:3.40.228.10 194 393 2.4E-129 T 10-10-2018 VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 Gene3D G3DSA:2.40.40.20 767 951 1.7E-48 T 10-10-2018 VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 Pfam PF00384 Molybdopterin oxidoreductase 117 568 1.8E-51 T 10-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 SUPERFAMILY SSF50692 752 951 5.59E-39 T 10-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 65 82 - T 10-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 SMART SM00926 60 114 3.9E-16 T 10-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 SUPERFAMILY SSF53706 59 646 3.93E-197 T 10-10-2018 VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 PIRSF PIRSF036643 453 586 1.3E-10 T 10-10-2018 VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 PIRSF PIRSF036643 638 697 61.0 T 10-10-2018 VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 PIRSF PIRSF036643 783 951 1.4E-16 T 10-10-2018 VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 PIRSF PIRSF036643 12 435 4.2E-100 T 10-10-2018 VF_1360 0c5aeb8e23cc4d3ad0f47340dad80d85 951 Gene3D G3DSA:2.20.25.90 61 113 3.1E-12 T 10-10-2018 VF_1946 9c0ee5d1c4782554171c33f4d9e16912 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 137 153 9.2E-47 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_1946 9c0ee5d1c4782554171c33f4d9e16912 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 91 102 9.2E-47 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_1946 9c0ee5d1c4782554171c33f4d9e16912 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 172 185 9.2E-47 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_1946 9c0ee5d1c4782554171c33f4d9e16912 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 200 209 9.2E-47 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_1946 9c0ee5d1c4782554171c33f4d9e16912 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 116 134 9.2E-47 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_1946 9c0ee5d1c4782554171c33f4d9e16912 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 156 169 9.2E-47 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_1946 9c0ee5d1c4782554171c33f4d9e16912 319 Gene3D G3DSA:3.90.226.10 2 318 1.4E-118 T 10-10-2018 VF_1946 9c0ee5d1c4782554171c33f4d9e16912 319 SUPERFAMILY SSF52096 5 318 4.03E-102 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VF_1946 9c0ee5d1c4782554171c33f4d9e16912 319 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 319 49.91 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_1946 9c0ee5d1c4782554171c33f4d9e16912 319 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 319 4.7E-159 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_1946 9c0ee5d1c4782554171c33f4d9e16912 319 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 6 151 6.9E-62 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_2280 2e5a386435b8f75a729f048eafd04356 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 197 5.7E-11 T 10-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VF_2280 2e5a386435b8f75a729f048eafd04356 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 166 182 5.7E-11 T 10-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VF_2280 2e5a386435b8f75a729f048eafd04356 210 SMART SM00100 2 122 7.0E-27 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain VF_2280 2e5a386435b8f75a729f048eafd04356 210 Gene3D G3DSA:2.60.120.10 10 138 4.4E-43 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_2280 2e5a386435b8f75a729f048eafd04356 210 Gene3D G3DSA:1.10.10.10 139 207 1.0E-35 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2280 2e5a386435b8f75a729f048eafd04356 210 ProSitePatterns PS00042 Crp-type HTH domain signature. 168 191 - T 10-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 VF_2280 2e5a386435b8f75a729f048eafd04356 210 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 71 89 - T 10-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site VF_2280 2e5a386435b8f75a729f048eafd04356 210 Pfam PF00325 Bacterial regulatory proteins, crp family 166 197 8.8E-16 T 10-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VF_2280 2e5a386435b8f75a729f048eafd04356 210 SUPERFAMILY SSF51206 8 136 1.57E-34 T 10-10-2018 IPR018490 Cyclic nucleotide-binding-like VF_2280 2e5a386435b8f75a729f048eafd04356 210 SMART SM00419 160 208 4.2E-17 T 10-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VF_2280 2e5a386435b8f75a729f048eafd04356 210 SUPERFAMILY SSF46785 139 207 3.88E-16 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_2280 2e5a386435b8f75a729f048eafd04356 210 Pfam PF00027 Cyclic nucleotide-binding domain 23 109 1.1E-22 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain VF_2280 2e5a386435b8f75a729f048eafd04356 210 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 30 46 - T 10-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site VF_0477 68a5de29e9fb90f559d75b4c4a6a4c2d 98 Gene3D G3DSA:3.30.110.60 1 98 1.7E-37 T 10-10-2018 IPR035920 YhbY-like superfamily VF_0477 68a5de29e9fb90f559d75b4c4a6a4c2d 98 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 98 4.0E-45 T 10-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 VF_0477 68a5de29e9fb90f559d75b4c4a6a4c2d 98 SUPERFAMILY SSF75471 1 94 3.53E-30 T 10-10-2018 IPR035920 YhbY-like superfamily VF_0477 68a5de29e9fb90f559d75b4c4a6a4c2d 98 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 97 6.6E-38 T 10-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 VF_0477 68a5de29e9fb90f559d75b4c4a6a4c2d 98 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 1.3E-21 T 10-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 VF_0477 68a5de29e9fb90f559d75b4c4a6a4c2d 98 SMART SM01103 3 86 1.6E-40 T 10-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 VF_1976 cb1e172d60a143e2aea3320525552b99 247 Gene3D G3DSA:3.20.20.380 2 247 5.3E-85 T 10-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 VF_1976 cb1e172d60a143e2aea3320525552b99 247 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 3 207 30.362 T 10-10-2018 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 VF_1976 cb1e172d60a143e2aea3320525552b99 247 Pfam PF03932 CutC family 4 205 1.1E-80 T 10-10-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 VF_1976 cb1e172d60a143e2aea3320525552b99 247 SUPERFAMILY SSF110395 3 246 2.09E-72 T 10-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 VF_A0201 72540c1b479b4ee9a5bc38b313acea46 378 Pfam PF11301 Protein of unknown function (DUF3103) 26 377 8.3E-167 T 10-10-2018 IPR021452 Protein of unknown function DUF3103 VF_A1024 b3d95b6a70ae97574ccf6273bcb85ce3 505 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 314 503 2.5E-26 T 10-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VF_A1024 b3d95b6a70ae97574ccf6273bcb85ce3 505 SUPERFAMILY SSF52172 142 273 1.41E-33 T 10-10-2018 IPR011006 CheY-like superfamily VF_A1024 b3d95b6a70ae97574ccf6273bcb85ce3 505 SMART SM00448 143 254 1.6E-23 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A1024 b3d95b6a70ae97574ccf6273bcb85ce3 505 Pfam PF13581 Histidine kinase-like ATPase domain 14 134 5.5E-12 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A1024 b3d95b6a70ae97574ccf6273bcb85ce3 505 SMART SM00331 292 504 1.1E-4 T 10-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VF_A1024 b3d95b6a70ae97574ccf6273bcb85ce3 505 SUPERFAMILY SSF81606 292 463 2.35E-8 T 10-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VF_A1024 b3d95b6a70ae97574ccf6273bcb85ce3 505 Pfam PF00072 Response regulator receiver domain 145 254 7.8E-26 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A1024 b3d95b6a70ae97574ccf6273bcb85ce3 505 Gene3D G3DSA:3.30.565.10 9 139 3.7E-11 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A1024 b3d95b6a70ae97574ccf6273bcb85ce3 505 Gene3D G3DSA:3.40.50.2300 140 279 9.9E-33 T 10-10-2018 VF_A1024 b3d95b6a70ae97574ccf6273bcb85ce3 505 Gene3D G3DSA:3.60.40.10 290 505 5.7E-32 T 10-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VF_2486 200fd4adf1aaa3688c57e6060c645413 104 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 103 6.7E-41 T 10-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VF_2486 200fd4adf1aaa3688c57e6060c645413 104 SUPERFAMILY SSF55387 1 103 3.84E-38 T 10-10-2018 VF_2486 200fd4adf1aaa3688c57e6060c645413 104 Hamap MF_00142 Iron-sulfur cluster assembly protein CyaY [cyaY]. 1 103 25.442 T 10-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VF_2486 200fd4adf1aaa3688c57e6060c645413 104 Pfam PF01491 Frataxin-like domain 1 100 1.0E-27 T 10-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VF_2486 200fd4adf1aaa3688c57e6060c645413 104 SMART SM01219 1 104 1.6E-50 T 10-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VF_2486 200fd4adf1aaa3688c57e6060c645413 104 Gene3D G3DSA:3.30.920.10 1 104 1.0E-35 T 10-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VF_2486 200fd4adf1aaa3688c57e6060c645413 104 ProSitePatterns PS01344 Frataxin family signature. 48 62 - T 10-10-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VF_2064 b62291aa0c7f7377d6abc41c472b5cd9 410 PIRSF PIRSF004539 1 409 6.2E-165 T 10-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VF_2064 b62291aa0c7f7377d6abc41c472b5cd9 410 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 6 408 1.0E-131 T 10-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VF_2064 b62291aa0c7f7377d6abc41c472b5cd9 410 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 373 2.5E-146 T 10-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VF_A0299 828ead436a454f83f1c8c006302a73e8 952 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 33 2.2E-5 T 10-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VF_A0299 828ead436a454f83f1c8c006302a73e8 952 SUPERFAMILY SSF53706 568 792 7.72E-61 T 10-10-2018 VF_A0299 828ead436a454f83f1c8c006302a73e8 952 Pfam PF00384 Molybdopterin oxidoreductase 597 691 1.3E-22 T 10-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A0299 828ead436a454f83f1c8c006302a73e8 952 Pfam PF00384 Molybdopterin oxidoreductase 87 559 2.1E-76 T 10-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A0299 828ead436a454f83f1c8c006302a73e8 952 Gene3D G3DSA:3.40.228.10 179 403 2.2E-204 T 10-10-2018 VF_A0299 828ead436a454f83f1c8c006302a73e8 952 Gene3D G3DSA:3.40.50.740 572 744 2.5E-51 T 10-10-2018 VF_A0299 828ead436a454f83f1c8c006302a73e8 952 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 848 875 - T 10-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 VF_A0299 828ead436a454f83f1c8c006302a73e8 952 Gene3D G3DSA:2.40.40.20 781 945 1.2E-48 T 10-10-2018 VF_A0299 828ead436a454f83f1c8c006302a73e8 952 Pfam PF01568 Molydopterin dinucleotide binding domain 808 928 4.6E-24 T 10-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VF_A0299 828ead436a454f83f1c8c006302a73e8 952 Gene3D G3DSA:3.90.55.10 82 539 2.2E-204 T 10-10-2018 VF_A0299 828ead436a454f83f1c8c006302a73e8 952 SUPERFAMILY SSF53706 42 565 5.37E-143 T 10-10-2018 VF_A0299 828ead436a454f83f1c8c006302a73e8 952 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 635 652 - T 10-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 VF_A0299 828ead436a454f83f1c8c006302a73e8 952 SUPERFAMILY SSF50692 801 951 4.21E-42 T 10-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VF_A0299 828ead436a454f83f1c8c006302a73e8 952 Gene3D G3DSA:3.40.50.740 87 564 2.2E-204 T 10-10-2018 VF_A0299 828ead436a454f83f1c8c006302a73e8 952 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 503 520 - T 10-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 VF_1541 c7e6cdea33cf5350c5e0922bcf476677 490 SMART SM00014 241 358 1.3E-10 T 10-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VF_1541 c7e6cdea33cf5350c5e0922bcf476677 490 SUPERFAMILY SSF55811 30 142 3.25E-16 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VF_1541 c7e6cdea33cf5350c5e0922bcf476677 490 Pfam PF01569 PAP2 superfamily 242 363 8.5E-24 T 10-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VF_1541 c7e6cdea33cf5350c5e0922bcf476677 490 Gene3D G3DSA:3.90.79.10 19 137 7.0E-14 T 10-10-2018 VF_1541 c7e6cdea33cf5350c5e0922bcf476677 490 Gene3D G3DSA:1.20.144.10 272 366 5.0E-14 T 10-10-2018 VF_1541 c7e6cdea33cf5350c5e0922bcf476677 490 SUPERFAMILY SSF48317 210 357 8.9E-23 T 10-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily VF_1541 c7e6cdea33cf5350c5e0922bcf476677 490 Pfam PF00293 NUDIX domain 31 88 1.1E-9 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VF_1237 a079e906e85640c95b4119be9430203a 98 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 30.451 T 10-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 VF_1237 a079e906e85640c95b4119be9430203a 98 Pfam PF00216 Bacterial DNA-binding protein 3 91 5.1E-33 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_1237 a079e906e85640c95b4119be9430203a 98 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 2.2E-17 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_1237 a079e906e85640c95b4119be9430203a 98 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 2.2E-17 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_1237 a079e906e85640c95b4119be9430203a 98 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 2.2E-17 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_1237 a079e906e85640c95b4119be9430203a 98 Gene3D G3DSA:4.10.520.10 1 97 1.9E-38 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VF_1237 a079e906e85640c95b4119be9430203a 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 10-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 VF_1237 a079e906e85640c95b4119be9430203a 98 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 93 3.0E-49 T 10-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 VF_1237 a079e906e85640c95b4119be9430203a 98 SUPERFAMILY SSF47729 3 94 4.56E-33 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VF_1237 a079e906e85640c95b4119be9430203a 98 SMART SM00411 3 92 3.7E-41 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_1033 62c94c099d263fb41037536f0de389f7 291 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 12 279 2.0E-152 T 10-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VF_1033 62c94c099d263fb41037536f0de389f7 291 PRINTS PR00095 Anthranilate synthase component I signature 115 128 1.4E-23 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VF_1033 62c94c099d263fb41037536f0de389f7 291 PRINTS PR00095 Anthranilate synthase component I signature 224 238 1.4E-23 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VF_1033 62c94c099d263fb41037536f0de389f7 291 PRINTS PR00095 Anthranilate synthase component I signature 209 223 1.4E-23 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VF_1033 62c94c099d263fb41037536f0de389f7 291 PRINTS PR00095 Anthranilate synthase component I signature 129 142 1.4E-23 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VF_1033 62c94c099d263fb41037536f0de389f7 291 SUPERFAMILY SSF56322 11 276 2.22E-116 T 10-10-2018 IPR005801 ADC synthase GO:0009058 VF_1033 62c94c099d263fb41037536f0de389f7 291 Pfam PF00425 chorismate binding enzyme 12 267 1.1E-82 T 10-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal VF_1033 62c94c099d263fb41037536f0de389f7 291 Gene3D G3DSA:3.60.120.10 2 284 1.0E-123 T 10-10-2018 IPR005801 ADC synthase GO:0009058 VF_A0766 b1f235e68d86404cd96eca1d063ea9e1 203 Pfam PF04542 Sigma-70 region 2 51 112 2.4E-11 T 10-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VF_A0766 b1f235e68d86404cd96eca1d063ea9e1 203 Pfam PF08281 Sigma-70, region 4 145 196 1.0E-8 T 10-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_A0766 b1f235e68d86404cd96eca1d063ea9e1 203 Gene3D G3DSA:1.10.10.10 112 202 1.2E-16 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0766 b1f235e68d86404cd96eca1d063ea9e1 203 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 43 199 3.0E-23 T 10-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VF_A0766 b1f235e68d86404cd96eca1d063ea9e1 203 SUPERFAMILY SSF88946 32 126 3.61E-18 T 10-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VF_A0766 b1f235e68d86404cd96eca1d063ea9e1 203 Gene3D G3DSA:1.10.1740.10 27 111 8.1E-22 T 10-10-2018 VF_A0766 b1f235e68d86404cd96eca1d063ea9e1 203 SUPERFAMILY SSF88659 138 200 6.73E-11 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_0929 d6bd266befdac4a0dbd737a3c78e9e09 211 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 10-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 VF_0929 d6bd266befdac4a0dbd737a3c78e9e09 211 Gene3D G3DSA:1.10.1670.10 11 203 1.0E-74 T 10-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 VF_0929 d6bd266befdac4a0dbd737a3c78e9e09 211 Hamap MF_00942 Endonuclease III [nth]. 1 209 36.849 T 10-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 VF_0929 d6bd266befdac4a0dbd737a3c78e9e09 211 SMART SM00478 38 185 2.8E-51 T 10-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 VF_0929 d6bd266befdac4a0dbd737a3c78e9e09 211 Pfam PF00633 Helix-hairpin-helix motif 100 127 9.2E-6 T 10-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 VF_0929 d6bd266befdac4a0dbd737a3c78e9e09 211 TIGRFAM TIGR01083 nth: endonuclease III 5 194 1.3E-86 T 10-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 VF_0929 d6bd266befdac4a0dbd737a3c78e9e09 211 Gene3D G3DSA:1.10.340.30 21 132 1.0E-74 T 10-10-2018 VF_0929 d6bd266befdac4a0dbd737a3c78e9e09 211 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 10-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 VF_0929 d6bd266befdac4a0dbd737a3c78e9e09 211 PIRSF PIRSF001435 1 211 5.6E-49 T 10-10-2018 VF_0929 d6bd266befdac4a0dbd737a3c78e9e09 211 SMART SM00525 186 206 9.6E-5 T 10-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 VF_0929 d6bd266befdac4a0dbd737a3c78e9e09 211 SUPERFAMILY SSF48150 6 208 6.28E-69 T 10-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 VF_0929 d6bd266befdac4a0dbd737a3c78e9e09 211 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 2.8E-18 T 10-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 VF_2475 f54af972e41569fc0708aa676f336aa9 302 SUPERFAMILY SSF50156 206 300 3.7E-18 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 VF_2475 f54af972e41569fc0708aa676f336aa9 302 Gene3D G3DSA:2.30.30.830 104 171 8.3E-29 T 10-10-2018 VF_2475 f54af972e41569fc0708aa676f336aa9 302 Gene3D G3DSA:2.30.42.10 198 300 1.3E-28 T 10-10-2018 VF_2475 f54af972e41569fc0708aa676f336aa9 302 TIGRFAM TIGR01713 typeII_sec_gspC: type II secretion system protein C 24 300 3.4E-72 T 10-10-2018 IPR001639 Type II secretion system protein C GO:0008565|GO:0015627|GO:0015628 VF_2475 f54af972e41569fc0708aa676f336aa9 302 Pfam PF11356 Type II secretion system protein C 28 170 8.1E-39 T 10-10-2018 IPR024961 Type II secretion system protein C, N-terminal VF_0739 912532965785093bfc24d462a1b32345 412 SUPERFAMILY SSF53474 43 409 1.1E-44 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_0739 912532965785093bfc24d462a1b32345 412 Gene3D G3DSA:3.40.50.1820 18 411 5.6E-106 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_0739 912532965785093bfc24d462a1b32345 412 Hamap MF_01063 Esterase FrsA [frsA]. 4 412 57.473 T 10-10-2018 IPR010520 UPF0255 family VF_0739 912532965785093bfc24d462a1b32345 412 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 6 410 7.8E-183 T 10-10-2018 IPR010520 UPF0255 family VF_0805 b5ce1bd41d97ba6871c76ae7bc387548 534 Gene3D G3DSA:3.40.50.720 379 529 9.1E-31 T 10-10-2018 VF_0805 b5ce1bd41d97ba6871c76ae7bc387548 534 SUPERFAMILY SSF51735 387 518 2.25E-15 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0805 b5ce1bd41d97ba6871c76ae7bc387548 534 Pfam PF02254 TrkA-N domain 388 504 1.2E-18 T 10-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VF_0805 b5ce1bd41d97ba6871c76ae7bc387548 534 Pfam PF00999 Sodium/hydrogen exchanger family 4 348 2.8E-36 T 10-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 VF_0805 b5ce1bd41d97ba6871c76ae7bc387548 534 Gene3D G3DSA:1.20.1530.20 2 363 2.6E-44 T 10-10-2018 IPR038770 Sodium/solute symporter superfamily VF_0965 2429bfdc3145ac51044f04b897692d1b 349 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 29 341 6.7E-115 T 10-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 VF_0965 2429bfdc3145ac51044f04b897692d1b 349 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 347 66.129 T 10-10-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 VF_0965 2429bfdc3145ac51044f04b897692d1b 349 SUPERFAMILY SSF142754 28 341 4.05E-107 T 10-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 VF_0965 2429bfdc3145ac51044f04b897692d1b 349 Gene3D G3DSA:3.40.50.10800 31 322 3.0E-95 T 10-10-2018 VF_0965 2429bfdc3145ac51044f04b897692d1b 349 Gene3D G3DSA:3.40.50.10800 115 340 3.0E-95 T 10-10-2018 VF_0965 2429bfdc3145ac51044f04b897692d1b 349 Gene3D G3DSA:3.40.50.10800 200 295 3.0E-95 T 10-10-2018 VF_0965 2429bfdc3145ac51044f04b897692d1b 349 Pfam PF02445 Quinolinate synthetase A protein 32 340 2.5E-103 T 10-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 VF_A0503 e695126c77d810daaf02b090ff59802a 170 PIRSF PIRSF003174 9 168 6.5E-51 T 10-10-2018 IPR010292 Uncharacterised protein family CreA VF_A0503 e695126c77d810daaf02b090ff59802a 170 Pfam PF05981 CreA protein 36 158 5.3E-45 T 10-10-2018 IPR010292 Uncharacterised protein family CreA VF_A0957 361cfc1d08de8ea4ba77474e1ee78cb7 432 Pfam PF07690 Major Facilitator Superfamily 16 371 5.9E-22 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_A0957 361cfc1d08de8ea4ba77474e1ee78cb7 432 Gene3D G3DSA:1.20.1250.20 12 208 7.4E-13 T 10-10-2018 VF_A0957 361cfc1d08de8ea4ba77474e1ee78cb7 432 Gene3D G3DSA:1.20.1250.20 218 421 4.1E-18 T 10-10-2018 VF_A0957 361cfc1d08de8ea4ba77474e1ee78cb7 432 SUPERFAMILY SSF103473 16 417 2.09E-36 T 10-10-2018 IPR036259 MFS transporter superfamily VF_0262 a8774e5ec35afe88fb57feb13002dabc 329 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 317 34.656 T 10-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_0262 a8774e5ec35afe88fb57feb13002dabc 329 SUPERFAMILY SSF55257 7 233 3.34E-30 T 10-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_0262 a8774e5ec35afe88fb57feb13002dabc 329 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 228 1.5E-23 T 10-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_0262 a8774e5ec35afe88fb57feb13002dabc 329 Gene3D G3DSA:1.10.150.20 244 329 1.3E-38 T 10-10-2018 VF_0262 a8774e5ec35afe88fb57feb13002dabc 329 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 329 2.0E-36 T 10-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_0262 a8774e5ec35afe88fb57feb13002dabc 329 Gene3D G3DSA:3.30.1360.10 17 228 4.1E-85 T 10-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_0262 a8774e5ec35afe88fb57feb13002dabc 329 SMART SM00662 23 234 1.0E-105 T 10-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_0262 a8774e5ec35afe88fb57feb13002dabc 329 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 316 4.6E-112 T 10-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_0262 a8774e5ec35afe88fb57feb13002dabc 329 SUPERFAMILY SSF47789 251 325 1.44E-25 T 10-10-2018 VF_0262 a8774e5ec35afe88fb57feb13002dabc 329 SUPERFAMILY SSF56553 53 178 5.23E-42 T 10-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_0262 a8774e5ec35afe88fb57feb13002dabc 329 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 308 7.0E-24 T 10-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_0262 a8774e5ec35afe88fb57feb13002dabc 329 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 62 155 4.3E-24 T 10-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_0262 a8774e5ec35afe88fb57feb13002dabc 329 Gene3D G3DSA:2.170.120.12 53 177 4.1E-85 T 10-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_1016 da4762e83d3e58ee7473099342a2c616 204 PIRSF PIRSF000495 4 204 3.8E-63 T 10-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 VF_1016 da4762e83d3e58ee7473099342a2c616 204 Gene3D G3DSA:3.40.50.880 2 204 1.1E-73 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_1016 da4762e83d3e58ee7473099342a2c616 204 SUPERFAMILY SSF52317 6 203 2.45E-54 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_1016 da4762e83d3e58ee7473099342a2c616 204 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 5 204 33.456 T 10-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 VF_1016 da4762e83d3e58ee7473099342a2c616 204 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 6 203 5.8E-68 T 10-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 VF_1016 da4762e83d3e58ee7473099342a2c616 204 Pfam PF00117 Glutamine amidotransferase class-I 8 201 9.2E-18 T 10-10-2018 IPR017926 Glutamine amidotransferase VF_0185 595e1aa3512cb6a549fbbf544691c1be 566 Gene3D G3DSA:3.40.50.1220 208 361 6.7E-100 T 10-10-2018 VF_0185 595e1aa3512cb6a549fbbf544691c1be 566 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 176 6.3E-45 T 10-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 VF_0185 595e1aa3512cb6a549fbbf544691c1be 566 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 541 9.0E-35 T 10-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 VF_0185 595e1aa3512cb6a549fbbf544691c1be 566 SUPERFAMILY SSF52467 207 355 1.43E-29 T 10-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VF_0185 595e1aa3512cb6a549fbbf544691c1be 566 SUPERFAMILY SSF52518 1 177 7.86E-42 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_0185 595e1aa3512cb6a549fbbf544691c1be 566 SUPERFAMILY SSF52518 371 562 1.04E-44 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_0185 595e1aa3512cb6a549fbbf544691c1be 566 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 207 332 3.8E-24 T 10-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 VF_0185 595e1aa3512cb6a549fbbf544691c1be 566 Gene3D G3DSA:3.40.50.970 1 180 3.5E-64 T 10-10-2018 VF_0185 595e1aa3512cb6a549fbbf544691c1be 566 Gene3D G3DSA:3.40.50.970 362 541 6.7E-100 T 10-10-2018 VF_A0790 4d73d5271f4375d06a3e856ff5b13de4 218 Gene3D G3DSA:2.160.10.10 1 216 3.4E-63 T 10-10-2018 VF_A0790 4d73d5271f4375d06a3e856ff5b13de4 218 SUPERFAMILY SSF51161 56 212 8.73E-37 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_A0790 4d73d5271f4375d06a3e856ff5b13de4 218 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 118 153 5.6E-11 T 10-10-2018 IPR001451 Hexapeptide repeat VF_A0790 4d73d5271f4375d06a3e856ff5b13de4 218 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 127 155 - T 10-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VF_0802 e24b231651da4170b56c00d7d1c9fa29 451 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 234 441 2.5E-44 T 10-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 VF_0802 e24b231651da4170b56c00d7d1c9fa29 451 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 6 229 7.9E-58 T 10-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 VF_0802 e24b231651da4170b56c00d7d1c9fa29 451 SUPERFAMILY SSF103473 8 437 7.98E-37 T 10-10-2018 IPR036259 MFS transporter superfamily VF_0802 e24b231651da4170b56c00d7d1c9fa29 451 Pfam PF00854 POT family 86 198 7.8E-27 T 10-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 VF_0802 e24b231651da4170b56c00d7d1c9fa29 451 Pfam PF00854 POT family 229 409 1.2E-33 T 10-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 VF_0802 e24b231651da4170b56c00d7d1c9fa29 451 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 154 166 - T 10-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 VF_0802 e24b231651da4170b56c00d7d1c9fa29 451 Gene3D G3DSA:1.20.1250.20 1 451 1.5E-124 T 10-10-2018 VF_0536 3d821c0028e7de040c79548146d50e6c 859 PRINTS PR00980 Alanyl-tRNA synthetase signature 76 87 6.2E-31 T 10-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VF_0536 3d821c0028e7de040c79548146d50e6c 859 PRINTS PR00980 Alanyl-tRNA synthetase signature 207 218 6.2E-31 T 10-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VF_0536 3d821c0028e7de040c79548146d50e6c 859 PRINTS PR00980 Alanyl-tRNA synthetase signature 234 247 6.2E-31 T 10-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VF_0536 3d821c0028e7de040c79548146d50e6c 859 PRINTS PR00980 Alanyl-tRNA synthetase signature 280 296 6.2E-31 T 10-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VF_0536 3d821c0028e7de040c79548146d50e6c 859 PRINTS PR00980 Alanyl-tRNA synthetase signature 304 317 6.2E-31 T 10-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VF_0536 3d821c0028e7de040c79548146d50e6c 859 SUPERFAMILY SSF55681 3 253 2.73E-108 T 10-10-2018 VF_0536 3d821c0028e7de040c79548146d50e6c 859 SUPERFAMILY SSF55186 550 710 1.1E-52 T 10-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 VF_0536 3d821c0028e7de040c79548146d50e6c 859 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 651 694 1.7E-17 T 10-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 VF_0536 3d821c0028e7de040c79548146d50e6c 859 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 859 198.001 T 10-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 VF_0536 3d821c0028e7de040c79548146d50e6c 859 Pfam PF01411 tRNA synthetases class II (A) 7 553 2.9E-225 T 10-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 VF_0536 3d821c0028e7de040c79548146d50e6c 859 SUPERFAMILY SSF50447 453 550 1.36E-18 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VF_0536 3d821c0028e7de040c79548146d50e6c 859 Gene3D G3DSA:2.40.30.130 449 562 1.9E-11 T 10-10-2018 VF_0536 3d821c0028e7de040c79548146d50e6c 859 Gene3D G3DSA:3.30.54.20 622 675 3.6E-50 T 10-10-2018 VF_0536 3d821c0028e7de040c79548146d50e6c 859 Gene3D G3DSA:3.30.930.10 2 250 5.8E-122 T 10-10-2018 VF_0536 3d821c0028e7de040c79548146d50e6c 859 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 7 838 0.0 T 10-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VF_0536 3d821c0028e7de040c79548146d50e6c 859 Gene3D G3DSA:3.30.980.10 563 695 3.6E-50 T 10-10-2018 VF_0536 3d821c0028e7de040c79548146d50e6c 859 Pfam PF02272 DHHA1 domain 721 855 2.7E-30 T 10-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 VF_0536 3d821c0028e7de040c79548146d50e6c 859 SMART SM00863 651 694 1.1E-20 T 10-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 VF_0536 3d821c0028e7de040c79548146d50e6c 859 SUPERFAMILY SSF101353 254 463 4.32E-60 T 10-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 VF_0536 3d821c0028e7de040c79548146d50e6c 859 Gene3D G3DSA:3.10.310.40 747 856 2.7E-31 T 10-10-2018 VF_2423 412f784a87f9bc1806d60880ba843417 394 SUPERFAMILY SSF50447 205 301 2.36E-29 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VF_2423 412f784a87f9bc1806d60880ba843417 394 Gene3D G3DSA:2.40.30.10 338 393 2.0E-29 T 10-10-2018 VF_2423 412f784a87f9bc1806d60880ba843417 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 3.2E-58 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_2423 412f784a87f9bc1806d60880ba843417 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 1.1E-16 T 10-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VF_2423 412f784a87f9bc1806d60880ba843417 394 Gene3D G3DSA:3.40.50.300 1 203 2.4E-70 T 10-10-2018 VF_2423 412f784a87f9bc1806d60880ba843417 394 SUPERFAMILY SSF50465 302 394 1.99E-35 T 10-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal VF_2423 412f784a87f9bc1806d60880ba843417 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.9E-33 T 10-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal VF_2423 412f784a87f9bc1806d60880ba843417 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 4.5E-14 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VF_2423 412f784a87f9bc1806d60880ba843417 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 10-10-2018 IPR031157 Tr-type G domain, conserved site VF_2423 412f784a87f9bc1806d60880ba843417 394 SUPERFAMILY SSF52540 6 219 1.29E-60 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2423 412f784a87f9bc1806d60880ba843417 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 7.0E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_2423 412f784a87f9bc1806d60880ba843417 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 7.0E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_2423 412f784a87f9bc1806d60880ba843417 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 7.0E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_2423 412f784a87f9bc1806d60880ba843417 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 7.0E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_2423 412f784a87f9bc1806d60880ba843417 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 7.0E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_2423 412f784a87f9bc1806d60880ba843417 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 59.421 T 10-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VF_2423 412f784a87f9bc1806d60880ba843417 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 393 1.6E-229 T 10-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VF_2423 412f784a87f9bc1806d60880ba843417 394 Gene3D G3DSA:2.40.30.10 206 334 1.8E-51 T 10-10-2018 VF_0534 ba8983affea217e7519671b7934f68fe 854 SMART SM00533 285 592 1.1E-110 T 10-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 VF_0534 ba8983affea217e7519671b7934f68fe 854 SUPERFAMILY SSF53150 116 268 4.58E-41 T 10-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 VF_0534 ba8983affea217e7519671b7934f68fe 854 Gene3D G3DSA:1.10.1420.10 268 560 2.0E-102 T 10-10-2018 VF_0534 ba8983affea217e7519671b7934f68fe 854 SUPERFAMILY SSF55271 4 115 1.06E-42 T 10-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 VF_0534 ba8983affea217e7519671b7934f68fe 854 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 9 851 0.0 T 10-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 VF_0534 ba8983affea217e7519671b7934f68fe 854 Gene3D G3DSA:3.30.420.110 129 264 1.6E-35 T 10-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 VF_0534 ba8983affea217e7519671b7934f68fe 854 Pfam PF05190 MutS family domain IV 429 519 2.5E-30 T 10-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 VF_0534 ba8983affea217e7519671b7934f68fe 854 SMART SM00534 608 795 1.5E-119 T 10-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 VF_0534 ba8983affea217e7519671b7934f68fe 854 Pfam PF01624 MutS domain I 10 121 9.8E-43 T 10-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 VF_0534 ba8983affea217e7519671b7934f68fe 854 SUPERFAMILY SSF48334 269 566 8.37E-92 T 10-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily VF_0534 ba8983affea217e7519671b7934f68fe 854 Gene3D G3DSA:3.40.1170.10 1 123 1.7E-53 T 10-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 VF_0534 ba8983affea217e7519671b7934f68fe 854 Pfam PF05192 MutS domain III 271 560 2.5E-43 T 10-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 VF_0534 ba8983affea217e7519671b7934f68fe 854 Pfam PF00488 MutS domain V 611 798 2.7E-87 T 10-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 VF_0534 ba8983affea217e7519671b7934f68fe 854 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 689 705 - T 10-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 VF_0534 ba8983affea217e7519671b7934f68fe 854 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 9 846 25.35 T 10-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 VF_0534 ba8983affea217e7519671b7934f68fe 854 PIRSF PIRSF037677 2 832 1.6E-160 T 10-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 VF_0534 ba8983affea217e7519671b7934f68fe 854 Pfam PF05188 MutS domain II 130 255 2.0E-30 T 10-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 VF_0534 ba8983affea217e7519671b7934f68fe 854 SUPERFAMILY SSF52540 568 799 1.85E-61 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0534 ba8983affea217e7519671b7934f68fe 854 Gene3D G3DSA:3.40.50.300 569 852 1.4E-101 T 10-10-2018 VF_0534 ba8983affea217e7519671b7934f68fe 854 Gene3D G3DSA:1.10.1420.10 388 504 2.0E-102 T 10-10-2018 VF_0803 8db878be3a2204b53758d04c5f3f0b6a 164 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 4 163 2.3E-61 T 10-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 VF_0803 8db878be3a2204b53758d04c5f3f0b6a 164 SMART SM00738 1 101 1.1E-27 T 10-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VF_0803 8db878be3a2204b53758d04c5f3f0b6a 164 Gene3D G3DSA:3.30.70.940 1 164 1.8E-51 T 10-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VF_0803 8db878be3a2204b53758d04c5f3f0b6a 164 SUPERFAMILY SSF82679 1 103 5.75E-28 T 10-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VF_0803 8db878be3a2204b53758d04c5f3f0b6a 164 Hamap MF_00951 Transcription antitermination protein RfaH [rfaH]. 1 164 47.879 T 10-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 VF_0803 8db878be3a2204b53758d04c5f3f0b6a 164 Pfam PF02357 Transcription termination factor nusG 2 92 5.3E-18 T 10-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VF_1105 ed520dd9e43fe319a70da40f48476e0c 409 Pfam PF12704 MacB-like periplasmic core domain 17 206 3.2E-10 T 10-10-2018 IPR025857 MacB-like periplasmic core domain VF_1105 ed520dd9e43fe319a70da40f48476e0c 409 Pfam PF02687 FtsX-like permease family 292 396 5.6E-9 T 10-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VF_A0741 996026749768467d2672a0afb398de03 334 SUPERFAMILY SSF47648 8 72 6.54E-15 T 10-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_A0741 996026749768467d2672a0afb398de03 334 Pfam PF02885 Glycosyl transferase family, helical bundle domain 15 70 9.8E-12 T 10-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_A0741 996026749768467d2672a0afb398de03 334 SUPERFAMILY SSF52418 81 327 1.11E-38 T 10-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_A0741 996026749768467d2672a0afb398de03 334 Gene3D G3DSA:3.40.1030.10 77 327 4.7E-37 T 10-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_A0741 996026749768467d2672a0afb398de03 334 Gene3D G3DSA:1.20.970.10 3 72 1.2E-14 T 10-10-2018 VF_1460 8de4203521c94a018abdfade5032ea4c 281 SUPERFAMILY SSF53850 90 277 5.89E-18 T 10-10-2018 VF_1460 8de4203521c94a018abdfade5032ea4c 281 Pfam PF03466 LysR substrate binding domain 90 276 1.5E-15 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1460 8de4203521c94a018abdfade5032ea4c 281 SUPERFAMILY SSF46785 4 75 2.98E-11 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1460 8de4203521c94a018abdfade5032ea4c 281 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 5.0E-12 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1460 8de4203521c94a018abdfade5032ea4c 281 Gene3D G3DSA:3.40.190.290 91 275 2.3E-9 T 10-10-2018 VF_1460 8de4203521c94a018abdfade5032ea4c 281 Gene3D G3DSA:1.10.10.10 4 69 2.1E-12 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0999 e5fd6870d045e15dce85573e4bf88883 380 Pfam PF01979 Amidohydrolase family 49 379 9.5E-22 T 10-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VF_A0999 e5fd6870d045e15dce85573e4bf88883 380 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 2 376 3.9E-95 T 10-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 VF_A0999 e5fd6870d045e15dce85573e4bf88883 380 SUPERFAMILY SSF51338 1 380 1.99E-13 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_A0999 e5fd6870d045e15dce85573e4bf88883 380 Gene3D G3DSA:3.20.20.140 53 350 2.5E-126 T 10-10-2018 VF_A0999 e5fd6870d045e15dce85573e4bf88883 380 Gene3D G3DSA:2.30.40.10 10 377 2.5E-126 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_A0999 e5fd6870d045e15dce85573e4bf88883 380 SUPERFAMILY SSF51556 53 350 7.78E-94 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_A0999 e5fd6870d045e15dce85573e4bf88883 380 PIRSF PIRSF038994 1 380 3.6E-126 T 10-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 VF_0109 8ddcbe7d897337c950663c14d158bef1 310 SUPERFAMILY SSF103481 188 288 7.06E-6 T 10-10-2018 VF_0109 8ddcbe7d897337c950663c14d158bef1 310 SUPERFAMILY SSF103481 40 142 4.58E-13 T 10-10-2018 VF_0109 8ddcbe7d897337c950663c14d158bef1 310 Pfam PF00892 EamA-like transporter family 7 140 2.7E-23 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_0109 8ddcbe7d897337c950663c14d158bef1 310 Pfam PF00892 EamA-like transporter family 153 286 1.2E-15 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_0751 cf847ba1fd0733607bdb1054d6d5563b 344 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 332 6.0E-102 T 10-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 VF_0751 cf847ba1fd0733607bdb1054d6d5563b 344 SUPERFAMILY SSF52540 1 208 5.32E-54 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0751 cf847ba1fd0733607bdb1054d6d5563b 344 Gene3D G3DSA:1.10.8.60 142 212 3.1E-22 T 10-10-2018 VF_0751 cf847ba1fd0733607bdb1054d6d5563b 344 SUPERFAMILY SSF48019 211 333 7.99E-34 T 10-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 VF_0751 cf847ba1fd0733607bdb1054d6d5563b 344 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 213 333 2.9E-33 T 10-10-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0751 cf847ba1fd0733607bdb1054d6d5563b 344 Pfam PF06144 DNA polymerase III, delta subunit 20 189 3.4E-45 T 10-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 VF_0751 cf847ba1fd0733607bdb1054d6d5563b 344 Gene3D G3DSA:3.40.50.300 1 139 8.8E-49 T 10-10-2018 VF_0751 cf847ba1fd0733607bdb1054d6d5563b 344 Gene3D G3DSA:1.20.272.10 213 339 3.3E-41 T 10-10-2018 VF_1411 379b8880b786451fc7558e1605baf6b3 179 SUPERFAMILY SSF54001 61 178 1.01E-38 T 10-10-2018 IPR038765 Papain-like cysteine peptidase superfamily VF_1411 379b8880b786451fc7558e1605baf6b3 179 Pfam PF00877 NlpC/P60 family 73 177 1.9E-30 T 10-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain VF_1411 379b8880b786451fc7558e1605baf6b3 179 Gene3D G3DSA:3.90.1720.10 58 179 4.8E-40 T 10-10-2018 VF_0860 cfb27c352a3a70c0fd351ec5db5fad98 411 Gene3D G3DSA:3.40.47.10 261 409 1.2E-45 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0860 cfb27c352a3a70c0fd351ec5db5fad98 411 SMART SM00825 Beta-ketoacyl synthase 5 410 2.6E-10 T 10-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain VF_0860 cfb27c352a3a70c0fd351ec5db5fad98 411 SUPERFAMILY SSF53901 217 408 1.75E-59 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0860 cfb27c352a3a70c0fd351ec5db5fad98 411 Gene3D G3DSA:3.40.47.10 1 255 1.1E-60 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0860 cfb27c352a3a70c0fd351ec5db5fad98 411 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 247 5.4E-41 T 10-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal VF_0860 cfb27c352a3a70c0fd351ec5db5fad98 411 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 156 172 - T 10-10-2018 IPR018201 Beta-ketoacyl synthase, active site VF_0860 cfb27c352a3a70c0fd351ec5db5fad98 411 SUPERFAMILY SSF53901 3 252 4.71E-56 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0860 cfb27c352a3a70c0fd351ec5db5fad98 411 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 364 9.7E-29 T 10-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal VF_1396 c00dad52e00a20fd365803052ffa4787 218 SUPERFAMILY SSF52172 1 118 6.97E-36 T 10-10-2018 IPR011006 CheY-like superfamily VF_1396 c00dad52e00a20fd365803052ffa4787 218 SUPERFAMILY SSF46894 119 216 3.12E-26 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_1396 c00dad52e00a20fd365803052ffa4787 218 SMART SM00862 145 216 4.4E-22 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_1396 c00dad52e00a20fd365803052ffa4787 218 Gene3D G3DSA:3.40.50.2300 1 122 1.1E-36 T 10-10-2018 VF_1396 c00dad52e00a20fd365803052ffa4787 218 Pfam PF00072 Response regulator receiver domain 3 113 5.3E-24 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1396 c00dad52e00a20fd365803052ffa4787 218 SMART SM00448 1 112 2.2E-34 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1396 c00dad52e00a20fd365803052ffa4787 218 Gene3D G3DSA:1.10.10.10 123 218 4.1E-27 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1396 c00dad52e00a20fd365803052ffa4787 218 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 216 8.3E-22 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 Gene3D G3DSA:3.40.50.300 390 562 3.1E-69 T 10-10-2018 VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 SUPERFAMILY SSF50447 794 890 8.84E-34 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 SUPERFAMILY SSF46955 3 50 5.49E-12 T 10-10-2018 IPR009061 Putative DNA-binding domain superfamily VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 Gene3D G3DSA:2.40.30.10 794 891 3.3E-34 T 10-10-2018 VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 SUPERFAMILY SSF50447 566 647 5.82E-24 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 ProSitePatterns PS01176 Initiation factor 2 signature. 843 865 - T 10-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 Pfam PF00009 Elongation factor Tu GTP binding domain 397 552 1.7E-32 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 317 367 9.9E-15 T 10-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 50 3.7E-6 T 10-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 62 99 4.4E-16 T 10-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 SUPERFAMILY SSF52540 391 557 3.73E-52 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 890 17.48 T 10-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 Gene3D G3DSA:3.40.50.10050 687 793 2.0E-37 T 10-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 Gene3D G3DSA:2.40.30.10 563 682 8.8E-41 T 10-10-2018 VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 SUPERFAMILY SSF52156 669 799 1.7E-38 T 10-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 Pfam PF11987 Translation-initiation factor 2 677 782 3.6E-37 T 10-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 395 550 1.8E-33 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 310 892 3.4E-285 T 10-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 VF_0486 fc0356526b096aaee7d9818a264dd5ae 893 Gene3D G3DSA:3.30.56.50 2 50 8.2E-22 T 10-10-2018 VF_A0169 c1cdd0ce31f9f2220139954c4f808a9d 543 SMART SM00283 281 542 1.4E-63 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0169 c1cdd0ce31f9f2220139954c4f808a9d 543 SMART SM00304 212 266 0.0022 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0169 c1cdd0ce31f9f2220139954c4f808a9d 543 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 171 1.2E-8 T 10-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VF_A0169 c1cdd0ce31f9f2220139954c4f808a9d 543 Gene3D G3DSA:1.10.287.950 211 543 1.4E-73 T 10-10-2018 VF_A0169 c1cdd0ce31f9f2220139954c4f808a9d 543 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 507 2.6E-39 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0169 c1cdd0ce31f9f2220139954c4f808a9d 543 SUPERFAMILY SSF58104 238 543 9.29E-70 T 10-10-2018 VF_1862 f5bb18a8e25b08a69308081fd0be55c9 398 Pfam PF07196 Flagellin hook IN motif 215 268 3.1E-11 T 10-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VF_1862 f5bb18a8e25b08a69308081fd0be55c9 398 PRINTS PR00207 Flagellin signature 57 74 2.9E-25 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1862 f5bb18a8e25b08a69308081fd0be55c9 398 PRINTS PR00207 Flagellin signature 131 154 2.9E-25 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1862 f5bb18a8e25b08a69308081fd0be55c9 398 PRINTS PR00207 Flagellin signature 96 115 2.9E-25 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1862 f5bb18a8e25b08a69308081fd0be55c9 398 Pfam PF00669 Bacterial flagellin N-terminal helical region 25 161 1.2E-41 T 10-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VF_1862 f5bb18a8e25b08a69308081fd0be55c9 398 Gene3D G3DSA:1.10.8.410 350 398 1.3E-20 T 10-10-2018 VF_1862 f5bb18a8e25b08a69308081fd0be55c9 398 Gene3D G3DSA:1.20.58.1830 25 53 1.9E-73 T 10-10-2018 VF_1862 f5bb18a8e25b08a69308081fd0be55c9 398 Gene3D G3DSA:1.20.1330.10 224 349 8.7E-17 T 10-10-2018 VF_1862 f5bb18a8e25b08a69308081fd0be55c9 398 SUPERFAMILY SSF64518 21 398 2.75E-96 T 10-10-2018 VF_1862 f5bb18a8e25b08a69308081fd0be55c9 398 Pfam PF00700 Bacterial flagellin C-terminal helical region 313 397 5.6E-25 T 10-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VF_1862 f5bb18a8e25b08a69308081fd0be55c9 398 Gene3D G3DSA:1.20.1330.10 65 199 1.9E-73 T 10-10-2018 VF_2367 c10544415b4c1ca52fbe1a52d2e9b9b1 243 Gene3D G3DSA:3.40.50.300 1 216 1.7E-57 T 10-10-2018 VF_2367 c10544415b4c1ca52fbe1a52d2e9b9b1 243 ProSitePatterns PS00211 ABC transporters family signature. 119 133 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_2367 c10544415b4c1ca52fbe1a52d2e9b9b1 243 SUPERFAMILY SSF52540 2 213 6.66E-54 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2367 c10544415b4c1ca52fbe1a52d2e9b9b1 243 SMART SM00382 27 197 2.8E-14 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2367 c10544415b4c1ca52fbe1a52d2e9b9b1 243 Pfam PF00005 ABC transporter 18 147 2.4E-27 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1485 e91bef2edf52a516d28f64f38855c64c 297 Gene3D G3DSA:3.40.140.10 31 181 7.0E-42 T 10-10-2018 VF_1485 e91bef2edf52a516d28f64f38855c64c 297 SUPERFAMILY SSF53927 5 148 2.01E-36 T 10-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VF_1485 e91bef2edf52a516d28f64f38855c64c 297 SUPERFAMILY SSF53927 155 286 6.36E-36 T 10-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VF_1485 e91bef2edf52a516d28f64f38855c64c 297 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 104 138 - T 10-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 VF_1485 e91bef2edf52a516d28f64f38855c64c 297 TIGRFAM TIGR01355 cyt_deam_dimer: cytidine deaminase 31 296 4.1E-91 T 10-10-2018 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 VF_1485 e91bef2edf52a516d28f64f38855c64c 297 PIRSF PIRSF006334 17 297 1.1E-107 T 10-10-2018 VF_1485 e91bef2edf52a516d28f64f38855c64c 297 Hamap MF_01558 Cytidine deaminase [cdd]. 4 295 49.604 T 10-10-2018 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 VF_1485 e91bef2edf52a516d28f64f38855c64c 297 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 64 144 6.1E-11 T 10-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain VF_1485 e91bef2edf52a516d28f64f38855c64c 297 Gene3D G3DSA:3.40.140.10 182 297 7.8E-27 T 10-10-2018 VF_1485 e91bef2edf52a516d28f64f38855c64c 297 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 159 279 4.5E-41 T 10-10-2018 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 VF_A0024 6a527f7d2f548f844c1d8cef5daee026 316 Gene3D G3DSA:1.10.10.10 4 92 4.8E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0024 6a527f7d2f548f844c1d8cef5daee026 316 Gene3D G3DSA:3.40.190.10 163 266 9.6E-48 T 10-10-2018 VF_A0024 6a527f7d2f548f844c1d8cef5daee026 316 Pfam PF03466 LysR substrate binding domain 88 291 7.2E-32 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0024 6a527f7d2f548f844c1d8cef5daee026 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 3.8E-16 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0024 6a527f7d2f548f844c1d8cef5daee026 316 SUPERFAMILY SSF53850 89 296 5.07E-34 T 10-10-2018 VF_A0024 6a527f7d2f548f844c1d8cef5daee026 316 Gene3D G3DSA:3.40.190.10 93 290 9.6E-48 T 10-10-2018 VF_A0024 6a527f7d2f548f844c1d8cef5daee026 316 SUPERFAMILY SSF46785 5 88 2.42E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0615 da07483bcc7bb724dcad490e4d2d947c 467 SUPERFAMILY SSF51905 7 294 6.69E-18 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0615 da07483bcc7bb724dcad490e4d2d947c 467 Gene3D G3DSA:3.50.50.60 199 262 2.0E-5 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0615 da07483bcc7bb724dcad490e4d2d947c 467 Pfam PF01266 FAD dependent oxidoreductase 9 371 3.7E-10 T 10-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VF_A0615 da07483bcc7bb724dcad490e4d2d947c 467 Gene3D G3DSA:3.30.9.10 263 274 2.0E-5 T 10-10-2018 VF_A0615 da07483bcc7bb724dcad490e4d2d947c 467 Gene3D G3DSA:3.50.50.60 4 123 6.2E-8 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0862 de1e2713bbd92900cb84ce9b03254523 511 Gene3D G3DSA:3.30.450.40 5 175 4.9E-15 T 10-10-2018 IPR029016 GAF-like domain superfamily VF_A0862 de1e2713bbd92900cb84ce9b03254523 511 Pfam PF02954 Bacterial regulatory protein, Fis family 471 502 8.9E-5 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_A0862 de1e2713bbd92900cb84ce9b03254523 511 Gene3D G3DSA:1.10.8.60 366 431 3.2E-13 T 10-10-2018 VF_A0862 de1e2713bbd92900cb84ce9b03254523 511 SUPERFAMILY SSF46689 462 509 3.72E-7 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0862 de1e2713bbd92900cb84ce9b03254523 511 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 281 296 - T 10-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VF_A0862 de1e2713bbd92900cb84ce9b03254523 511 Gene3D G3DSA:1.10.10.60 454 511 2.8E-10 T 10-10-2018 VF_A0862 de1e2713bbd92900cb84ce9b03254523 511 SUPERFAMILY SSF55781 7 167 8.72E-17 T 10-10-2018 VF_A0862 de1e2713bbd92900cb84ce9b03254523 511 SUPERFAMILY SSF52540 194 439 1.74E-64 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0862 de1e2713bbd92900cb84ce9b03254523 511 SMART SM00065 21 171 0.0034 T 10-10-2018 IPR003018 GAF domain GO:0005515 VF_A0862 de1e2713bbd92900cb84ce9b03254523 511 Pfam PF00158 Sigma-54 interaction domain 195 362 4.0E-69 T 10-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VF_A0862 de1e2713bbd92900cb84ce9b03254523 511 Gene3D G3DSA:3.40.50.300 181 365 2.7E-64 T 10-10-2018 VF_A0862 de1e2713bbd92900cb84ce9b03254523 511 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 219 232 - T 10-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VF_A0862 de1e2713bbd92900cb84ce9b03254523 511 SMART SM00382 215 359 1.0E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1022 2fc9a6b1289553f6b5624fc6496ff7a2 132 Gene3D G3DSA:3.30.300.250 17 125 9.5E-36 T 10-10-2018 VF_1022 2fc9a6b1289553f6b5624fc6496ff7a2 132 PIRSF PIRSF007010 1 127 6.6E-54 T 10-10-2018 IPR016502 Type II secretion system (T2SS) pilotin, S protein VF_1022 2fc9a6b1289553f6b5624fc6496ff7a2 132 Pfam PF16549 Type II secretion system (T2SS) pilotin, S protein 13 124 6.2E-43 T 10-10-2018 IPR016502 Type II secretion system (T2SS) pilotin, S protein VF_0087 26ec7a95612b6f91cd2f149ac53f60b6 831 Pfam PF00563 EAL domain 600 824 1.7E-54 T 10-10-2018 IPR001633 EAL domain VF_0087 26ec7a95612b6f91cd2f149ac53f60b6 831 SMART SM00897 27 216 7.5E-28 T 10-10-2018 IPR013702 FIST domain, N-terminal VF_0087 26ec7a95612b6f91cd2f149ac53f60b6 831 Gene3D G3DSA:3.30.70.270 415 593 1.2E-11 T 10-10-2018 VF_0087 26ec7a95612b6f91cd2f149ac53f60b6 831 Gene3D G3DSA:3.20.20.450 594 830 1.8E-57 T 10-10-2018 IPR035919 EAL domain superfamily VF_0087 26ec7a95612b6f91cd2f149ac53f60b6 831 SMART SM00052 591 829 3.9E-37 T 10-10-2018 IPR001633 EAL domain VF_0087 26ec7a95612b6f91cd2f149ac53f60b6 831 SUPERFAMILY SSF55073 422 549 5.41E-8 T 10-10-2018 IPR029787 Nucleotide cyclase VF_0087 26ec7a95612b6f91cd2f149ac53f60b6 831 Pfam PF08495 FIST N domain 30 214 2.9E-17 T 10-10-2018 IPR013702 FIST domain, N-terminal VF_0087 26ec7a95612b6f91cd2f149ac53f60b6 831 Pfam PF00990 Diguanylate cyclase, GGDEF domain 418 478 1.4E-5 T 10-10-2018 IPR000160 GGDEF domain VF_0087 26ec7a95612b6f91cd2f149ac53f60b6 831 SUPERFAMILY SSF141868 599 826 6.15E-56 T 10-10-2018 IPR035919 EAL domain superfamily VF_0087 26ec7a95612b6f91cd2f149ac53f60b6 831 Pfam PF10442 FIST C domain 217 341 4.9E-12 T 10-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 VF_0087 26ec7a95612b6f91cd2f149ac53f60b6 831 SMART SM01204 217 343 3.6E-13 T 10-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 Gene3D G3DSA:3.30.70.270 247 419 9.8E-48 T 10-10-2018 VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 Pfam PF08448 PAS fold 15 119 7.0E-12 T 10-10-2018 IPR013656 PAS fold-4 VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 Gene3D G3DSA:3.30.450.20 3 127 7.0E-14 T 10-10-2018 VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 SUPERFAMILY SSF55073 255 408 1.18E-44 T 10-10-2018 IPR029787 Nucleotide cyclase VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 SUPERFAMILY SSF141868 424 670 5.1E-84 T 10-10-2018 IPR035919 EAL domain superfamily VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 9 121 1.8E-9 T 10-10-2018 IPR000014 PAS domain VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 SMART SM00091 130 196 0.24 T 10-10-2018 IPR000014 PAS domain VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 SMART SM00091 8 74 0.055 T 10-10-2018 IPR000014 PAS domain VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 SMART SM00052 417 663 8.6E-107 T 10-10-2018 IPR001633 EAL domain VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 Gene3D G3DSA:3.20.20.450 420 672 7.4E-95 T 10-10-2018 IPR035919 EAL domain superfamily VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 SMART SM00267 240 407 1.9E-46 T 10-10-2018 IPR000160 GGDEF domain VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 Pfam PF00563 EAL domain 424 658 6.2E-73 T 10-10-2018 IPR001633 EAL domain VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 SUPERFAMILY SSF55785 114 202 4.71E-8 T 10-10-2018 IPR035965 PAS domain superfamily VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 Pfam PF00990 Diguanylate cyclase, GGDEF domain 251 403 1.3E-39 T 10-10-2018 IPR000160 GGDEF domain VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 Gene3D G3DSA:3.30.450.20 128 229 1.1E-7 T 10-10-2018 VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 SUPERFAMILY SSF55785 13 118 4.89E-12 T 10-10-2018 IPR035965 PAS domain superfamily VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 250 404 9.9E-37 T 10-10-2018 IPR000160 GGDEF domain VF_0494 8cf58ba46ff2f9160009a4b2fcaaeb38 675 Pfam PF13426 PAS domain 141 196 7.6E-5 T 10-10-2018 IPR000014 PAS domain VF_1735 43f42bddc0e820bb0812a4039c8be9bb 210 SUPERFAMILY SSF52540 1 204 5.1E-55 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1735 43f42bddc0e820bb0812a4039c8be9bb 210 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 197 3.2E-61 T 10-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 VF_1735 43f42bddc0e820bb0812a4039c8be9bb 210 Gene3D G3DSA:3.40.50.300 2 208 7.4E-62 T 10-10-2018 VF_1735 43f42bddc0e820bb0812a4039c8be9bb 210 ProSitePatterns PS01331 Thymidylate kinase signature. 94 106 - T 10-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 VF_1735 43f42bddc0e820bb0812a4039c8be9bb 210 Hamap MF_00165 Thymidylate kinase [tmk]. 3 205 27.735 T 10-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 VF_1735 43f42bddc0e820bb0812a4039c8be9bb 210 Pfam PF02223 Thymidylate kinase 7 197 9.8E-55 T 10-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 VF_0998 58ff622dd1e65c093cdf9bd69777abec 522 Gene3D G3DSA:3.40.50.300 190 373 1.3E-59 T 10-10-2018 VF_0998 58ff622dd1e65c093cdf9bd69777abec 522 Gene3D G3DSA:1.10.8.60 374 438 5.0E-18 T 10-10-2018 VF_0998 58ff622dd1e65c093cdf9bd69777abec 522 Pfam PF00158 Sigma-54 interaction domain 203 369 9.0E-64 T 10-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VF_0998 58ff622dd1e65c093cdf9bd69777abec 522 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 289 304 - T 10-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VF_0998 58ff622dd1e65c093cdf9bd69777abec 522 SMART SM00382 223 366 3.6E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0998 58ff622dd1e65c093cdf9bd69777abec 522 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 416 425 - T 10-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VF_0998 58ff622dd1e65c093cdf9bd69777abec 522 SUPERFAMILY SSF46689 464 516 9.86E-6 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_0998 58ff622dd1e65c093cdf9bd69777abec 522 Pfam PF02954 Bacterial regulatory protein, Fis family 473 513 3.8E-7 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_0998 58ff622dd1e65c093cdf9bd69777abec 522 Gene3D G3DSA:1.10.10.60 455 519 3.9E-8 T 10-10-2018 VF_0998 58ff622dd1e65c093cdf9bd69777abec 522 SUPERFAMILY SSF52540 202 435 3.37E-65 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0998 58ff622dd1e65c093cdf9bd69777abec 522 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 227 240 - T 10-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VF_A0797 041b981d5ed0625c0f9f4d18fbf96542 296 Gene3D G3DSA:1.10.3720.10 2 283 7.7E-74 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0797 041b981d5ed0625c0f9f4d18fbf96542 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 285 4.9E-17 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_A0797 041b981d5ed0625c0f9f4d18fbf96542 296 SUPERFAMILY SSF161098 10 296 1.59E-68 T 10-10-2018 IPR035906 MetI-like superfamily VF_0773 2aecb9d954ef60f8b6ca58098cd5ab6b 258 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 15 248 2.6E-94 T 10-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VF_0773 2aecb9d954ef60f8b6ca58098cd5ab6b 258 SUPERFAMILY SSF53790 11 256 5.5E-79 T 10-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 VF_0773 2aecb9d954ef60f8b6ca58098cd5ab6b 258 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 18 227 2.3E-50 T 10-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 VF_0773 2aecb9d954ef60f8b6ca58098cd5ab6b 258 Gene3D G3DSA:3.40.1010.10 13 130 8.3E-44 T 10-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 VF_0773 2aecb9d954ef60f8b6ca58098cd5ab6b 258 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 95 128 - T 10-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VF_0773 2aecb9d954ef60f8b6ca58098cd5ab6b 258 Gene3D G3DSA:3.30.950.10 131 258 2.4E-44 T 10-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 VF_0773 2aecb9d954ef60f8b6ca58098cd5ab6b 258 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 20 34 - T 10-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VF_A0583 ed162cf8be60e9fde0e5f7eb37c08b0c 188 SUPERFAMILY SSF82057 118 187 1.51E-20 T 10-10-2018 VF_A0583 ed162cf8be60e9fde0e5f7eb37c08b0c 188 Pfam PF03831 PhnA domain 122 188 1.5E-22 T 10-10-2018 IPR013988 PhnA protein, C-terminal VF_A0583 ed162cf8be60e9fde0e5f7eb37c08b0c 188 Gene3D G3DSA:2.30.30.40 118 188 2.0E-23 T 10-10-2018 VF_A0583 ed162cf8be60e9fde0e5f7eb37c08b0c 188 SMART SM00782 6 52 2.2E-32 T 10-10-2018 IPR013991 PhnA protein N-terminal, proteobacterial VF_A0583 ed162cf8be60e9fde0e5f7eb37c08b0c 188 Pfam PF08274 PhnA Zinc-Ribbon 13 52 2.1E-9 T 10-10-2018 IPR013987 PhnA protein, N-terminal VF_A0558 f813e0314faad079940a8bf40f0d52e5 321 SUPERFAMILY SSF102886 2 293 1.15E-59 T 10-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VF_A0558 f813e0314faad079940a8bf40f0d52e5 321 Pfam PF01218 Coproporphyrinogen III oxidase 34 268 4.8E-26 T 10-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VF_A0558 f813e0314faad079940a8bf40f0d52e5 321 Gene3D G3DSA:3.40.1500.10 4 292 1.8E-43 T 10-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VF_A1023 add4e0b8236f268c6ce995e979ce5351 235 SUPERFAMILY SSF52540 23 198 5.67E-14 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A1023 add4e0b8236f268c6ce995e979ce5351 235 Gene3D G3DSA:3.40.50.300 7 201 3.1E-21 T 10-10-2018 VF_A0057 c24433136a4adc97d2eb5fb5ced6a17a 663 Gene3D G3DSA:3.30.450.20 238 367 5.4E-7 T 10-10-2018 VF_A0057 c24433136a4adc97d2eb5fb5ced6a17a 663 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 491 655 1.4E-34 T 10-10-2018 IPR000160 GGDEF domain VF_A0057 c24433136a4adc97d2eb5fb5ced6a17a 663 SMART SM00267 483 655 2.6E-52 T 10-10-2018 IPR000160 GGDEF domain VF_A0057 c24433136a4adc97d2eb5fb5ced6a17a 663 Pfam PF17152 Periplasmic sensor domain 49 142 4.9E-9 T 10-10-2018 IPR033417 Periplasmic sensor domain CHASE8 VF_A0057 c24433136a4adc97d2eb5fb5ced6a17a 663 SMART SM00304 180 233 0.0022 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0057 c24433136a4adc97d2eb5fb5ced6a17a 663 SUPERFAMILY SSF158472 180 230 8.63E-6 T 10-10-2018 VF_A0057 c24433136a4adc97d2eb5fb5ced6a17a 663 Pfam PF13426 PAS domain 382 483 0.23 T 10-10-2018 IPR000014 PAS domain VF_A0057 c24433136a4adc97d2eb5fb5ced6a17a 663 Gene3D G3DSA:1.20.1480.50 143 237 9.4E-7 T 10-10-2018 VF_A0057 c24433136a4adc97d2eb5fb5ced6a17a 663 Pfam PF00990 Diguanylate cyclase, GGDEF domain 494 651 1.3E-42 T 10-10-2018 IPR000160 GGDEF domain VF_A0057 c24433136a4adc97d2eb5fb5ced6a17a 663 Pfam PF13188 PAS domain 248 284 0.029 T 10-10-2018 IPR000014 PAS domain VF_A0057 c24433136a4adc97d2eb5fb5ced6a17a 663 Gene3D G3DSA:3.30.70.270 488 660 4.2E-47 T 10-10-2018 VF_A0057 c24433136a4adc97d2eb5fb5ced6a17a 663 SUPERFAMILY SSF55073 499 655 5.65E-40 T 10-10-2018 IPR029787 Nucleotide cyclase VF_0016 177f8b643c8243cea6d5d1a61db7d746 688 Pfam PF05746 DALR anticodon binding domain 580 677 1.3E-9 T 10-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 VF_0016 177f8b643c8243cea6d5d1a61db7d746 688 SMART SM00836 583 686 0.0091 T 10-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 VF_0016 177f8b643c8243cea6d5d1a61db7d746 688 SUPERFAMILY SSF109604 351 489 4.19E-13 T 10-10-2018 VF_0016 177f8b643c8243cea6d5d1a61db7d746 688 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 2 686 26.302 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0016 177f8b643c8243cea6d5d1a61db7d746 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 49 61 1.0E-36 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0016 177f8b643c8243cea6d5d1a61db7d746 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 245 260 1.0E-36 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0016 177f8b643c8243cea6d5d1a61db7d746 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 317 333 1.0E-36 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0016 177f8b643c8243cea6d5d1a61db7d746 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 393 412 1.0E-36 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0016 177f8b643c8243cea6d5d1a61db7d746 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 6 19 1.0E-36 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0016 177f8b643c8243cea6d5d1a61db7d746 688 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 5 549 2.4E-209 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0016 177f8b643c8243cea6d5d1a61db7d746 688 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 3 687 1.4E-297 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 SUPERFAMILY SSF82693 40 135 5.76E-20 T 10-10-2018 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 Gene3D G3DSA:3.30.70.1430 40 803 4.9E-259 T 10-10-2018 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 Pfam PF00873 AcrB/AcrD/AcrF family 3 1011 3.8E-172 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 Gene3D G3DSA:3.30.70.1320 136 328 4.9E-259 T 10-10-2018 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 SUPERFAMILY SSF82714 185 267 1.57E-13 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 SUPERFAMILY SSF82693 136 325 6.1E-20 T 10-10-2018 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 Gene3D G3DSA:3.30.70.1430 555 653 4.9E-259 T 10-10-2018 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 Gene3D G3DSA:3.30.2090.10 179 270 4.9E-259 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 Gene3D G3DSA:3.30.2090.10 705 795 4.9E-259 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 Gene3D G3DSA:3.30.70.1440 654 855 4.9E-259 T 10-10-2018 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 SUPERFAMILY SSF82866 793 1015 2.49E-42 T 10-10-2018 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 SUPERFAMILY SSF82714 711 787 2.22E-10 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 SUPERFAMILY SSF82866 292 491 3.01E-38 T 10-10-2018 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 2.4E-24 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 2.4E-24 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.4E-24 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 2.4E-24 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.4E-24 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 2.4E-24 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 Gene3D G3DSA:1.20.1640.10 503 1008 4.9E-259 T 10-10-2018 VF_A0046 dad88a305b9536d6b85c4baac06dbb67 1021 Gene3D G3DSA:1.20.1640.10 10 502 4.9E-259 T 10-10-2018 VF_1809 0f6bea3afbd1e474ab8f40ec07725991 925 Gene3D G3DSA:3.30.830.10 240 468 1.7E-72 T 10-10-2018 VF_1809 0f6bea3afbd1e474ab8f40ec07725991 925 Gene3D G3DSA:3.30.830.10 1 228 3.5E-80 T 10-10-2018 VF_1809 0f6bea3afbd1e474ab8f40ec07725991 925 SUPERFAMILY SSF63411 4 227 1.03E-57 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VF_1809 0f6bea3afbd1e474ab8f40ec07725991 925 Gene3D G3DSA:3.30.830.10 618 876 1.2E-110 T 10-10-2018 VF_1809 0f6bea3afbd1e474ab8f40ec07725991 925 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 42 65 - T 10-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 VF_1809 0f6bea3afbd1e474ab8f40ec07725991 925 SUPERFAMILY SSF63411 470 694 1.38E-58 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VF_1809 0f6bea3afbd1e474ab8f40ec07725991 925 Pfam PF05193 Peptidase M16 inactive domain 647 824 9.8E-12 T 10-10-2018 IPR007863 Peptidase M16, C-terminal VF_1809 0f6bea3afbd1e474ab8f40ec07725991 925 Pfam PF05193 Peptidase M16 inactive domain 182 360 9.3E-19 T 10-10-2018 IPR007863 Peptidase M16, C-terminal VF_1809 0f6bea3afbd1e474ab8f40ec07725991 925 Pfam PF00675 Insulinase (Peptidase family M16) 22 155 3.8E-38 T 10-10-2018 IPR011765 Peptidase M16, N-terminal VF_1809 0f6bea3afbd1e474ab8f40ec07725991 925 Gene3D G3DSA:3.30.830.10 470 852 1.2E-110 T 10-10-2018 VF_1809 0f6bea3afbd1e474ab8f40ec07725991 925 SUPERFAMILY SSF63411 232 468 9.5E-79 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VF_1809 0f6bea3afbd1e474ab8f40ec07725991 925 SUPERFAMILY SSF63411 703 916 1.42E-46 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VF_1809 0f6bea3afbd1e474ab8f40ec07725991 925 Pfam PF16187 Middle or third domain of peptidase_M16 366 643 7.2E-88 T 10-10-2018 IPR032632 Peptidase M16, middle/third domain VF_A0321 dd8026520e26cc0d024221d5cb427d50 267 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 122 136 2.1E-32 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_A0321 dd8026520e26cc0d024221d5cb427d50 267 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 34 55 2.1E-32 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_A0321 dd8026520e26cc0d024221d5cb427d50 267 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 21 28 2.1E-32 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_A0321 dd8026520e26cc0d024221d5cb427d50 267 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 166 183 2.1E-32 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_A0321 dd8026520e26cc0d024221d5cb427d50 267 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 65 73 2.1E-32 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_A0321 dd8026520e26cc0d024221d5cb427d50 267 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 91 108 2.1E-32 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_A0321 dd8026520e26cc0d024221d5cb427d50 267 Gene3D G3DSA:3.40.1190.20 1 266 2.3E-86 T 10-10-2018 IPR029056 Ribokinase-like VF_A0321 dd8026520e26cc0d024221d5cb427d50 267 PIRSF PIRSF000513 7 266 2.1E-93 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_A0321 dd8026520e26cc0d024221d5cb427d50 267 Pfam PF02110 Hydroxyethylthiazole kinase family 14 255 8.3E-72 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_A0321 dd8026520e26cc0d024221d5cb427d50 267 SUPERFAMILY SSF53613 8 263 1.71E-58 T 10-10-2018 IPR029056 Ribokinase-like VF_A0321 dd8026520e26cc0d024221d5cb427d50 267 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 15 258 29.348 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_0994 d6357738420cd30f01e5b0541177c680 277 Gene3D G3DSA:1.25.40.590 55 212 3.6E-50 T 10-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily VF_0994 d6357738420cd30f01e5b0541177c680 277 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 57 266 2.9E-69 T 10-10-2018 IPR017732 Type IV / VI secretion system, DotU VF_0994 d6357738420cd30f01e5b0541177c680 277 Pfam PF09850 Type VI secretion system protein DotU 58 259 4.2E-62 T 10-10-2018 IPR017732 Type IV / VI secretion system, DotU VF_0811 fd2f4971d4a478bb28510fbdc7947c44 154 Gene3D G3DSA:3.10.129.10 11 152 9.9E-28 T 10-10-2018 VF_0811 fd2f4971d4a478bb28510fbdc7947c44 154 SUPERFAMILY SSF54637 7 148 9.7E-24 T 10-10-2018 IPR029069 HotDog domain superfamily VF_0811 fd2f4971d4a478bb28510fbdc7947c44 154 Pfam PF14539 Domain of unknown function (DUF4442) 8 147 1.4E-33 T 10-10-2018 IPR027961 Protein of unknown function DUF4442 VF_2560 b6cec7d599a13bf8ca36c5155f944719 510 Gene3D G3DSA:3.40.50.1100 57 153 6.2E-133 T 10-10-2018 VF_2560 b6cec7d599a13bf8ca36c5155f944719 510 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 49 62 - T 10-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 VF_2560 b6cec7d599a13bf8ca36c5155f944719 510 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 325 415 1.7E-26 T 10-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 VF_2560 b6cec7d599a13bf8ca36c5155f944719 510 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 423 509 5.2E-25 T 10-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 VF_2560 b6cec7d599a13bf8ca36c5155f944719 510 SUPERFAMILY SSF53686 10 361 1.96E-104 T 10-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VF_2560 b6cec7d599a13bf8ca36c5155f944719 510 Gene3D G3DSA:3.40.50.1100 21 323 6.2E-133 T 10-10-2018 VF_2560 b6cec7d599a13bf8ca36c5155f944719 510 Gene3D G3DSA:3.40.1020.10 334 510 2.7E-72 T 10-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 VF_2560 b6cec7d599a13bf8ca36c5155f944719 510 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 24 312 8.5E-82 T 10-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VF_2560 b6cec7d599a13bf8ca36c5155f944719 510 SUPERFAMILY SSF55021 416 509 7.1E-26 T 10-10-2018 VF_2560 b6cec7d599a13bf8ca36c5155f944719 510 SUPERFAMILY SSF55021 333 419 2.75E-27 T 10-10-2018 VF_2560 b6cec7d599a13bf8ca36c5155f944719 510 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 11 509 7.7E-249 T 10-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 VF_A0310 85a0c6bec896a000912b61434dd417eb 339 Gene3D G3DSA:1.10.10.60 266 333 5.5E-8 T 10-10-2018 VF_A0310 85a0c6bec896a000912b61434dd417eb 339 SUPERFAMILY SSF46689 220 331 3.36E-7 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0310 85a0c6bec896a000912b61434dd417eb 339 Pfam PF00158 Sigma-54 interaction domain 6 169 9.0E-59 T 10-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VF_A0310 85a0c6bec896a000912b61434dd417eb 339 SMART SM00382 26 177 6.4E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0310 85a0c6bec896a000912b61434dd417eb 339 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 220 229 - T 10-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VF_A0310 85a0c6bec896a000912b61434dd417eb 339 TIGRFAM TIGR02974 phageshock_pspF: psp operon transcriptional activator 6 329 1.5E-161 T 10-10-2018 IPR014317 Transcription activator PspF VF_A0310 85a0c6bec896a000912b61434dd417eb 339 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 92 107 - T 10-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VF_A0310 85a0c6bec896a000912b61434dd417eb 339 Gene3D G3DSA:3.40.50.300 1 177 1.7E-58 T 10-10-2018 VF_A0310 85a0c6bec896a000912b61434dd417eb 339 SUPERFAMILY SSF52540 6 248 8.46E-63 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0310 85a0c6bec896a000912b61434dd417eb 339 Pfam PF02954 Bacterial regulatory protein, Fis family 291 324 5.7E-7 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_A0310 85a0c6bec896a000912b61434dd417eb 339 Gene3D G3DSA:1.10.8.60 178 263 5.7E-24 T 10-10-2018 VF_1619 c25b02904db9f1dba935300704c85263 972 Pfam PF01627 Hpt domain 886 951 5.9E-14 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VF_1619 c25b02904db9f1dba935300704c85263 972 SMART SM00448 711 829 9.7E-26 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1619 c25b02904db9f1dba935300704c85263 972 Gene3D G3DSA:1.10.287.130 412 532 5.1E-27 T 10-10-2018 VF_1619 c25b02904db9f1dba935300704c85263 972 Gene3D G3DSA:1.20.120.160 857 972 2.2E-26 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_1619 c25b02904db9f1dba935300704c85263 972 Gene3D G3DSA:1.20.58.920 64 340 6.4E-85 T 10-10-2018 IPR038188 TorS, sensor domain superfamily VF_1619 c25b02904db9f1dba935300704c85263 972 Gene3D G3DSA:3.40.50.2300 702 839 2.0E-31 T 10-10-2018 VF_1619 c25b02904db9f1dba935300704c85263 972 PRINTS PR00344 Bacterial sensor protein C-terminal signature 676 689 3.0E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1619 c25b02904db9f1dba935300704c85263 972 PRINTS PR00344 Bacterial sensor protein C-terminal signature 618 632 3.0E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1619 c25b02904db9f1dba935300704c85263 972 PRINTS PR00344 Bacterial sensor protein C-terminal signature 652 670 3.0E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1619 c25b02904db9f1dba935300704c85263 972 PRINTS PR00344 Bacterial sensor protein C-terminal signature 636 646 3.0E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1619 c25b02904db9f1dba935300704c85263 972 TIGRFAM TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS 21 970 0.0 T 10-10-2018 IPR014302 Signal transduction histidine kinase, TMAO sensor TorS GO:0000155|GO:0000160|GO:0004673|GO:0016021 VF_1619 c25b02904db9f1dba935300704c85263 972 SUPERFAMILY SSF52172 710 835 2.42E-31 T 10-10-2018 IPR011006 CheY-like superfamily VF_1619 c25b02904db9f1dba935300704c85263 972 SUPERFAMILY SSF47226 862 971 2.88E-24 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_1619 c25b02904db9f1dba935300704c85263 972 SMART SM00388 469 534 2.9E-24 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_1619 c25b02904db9f1dba935300704c85263 972 Pfam PF00512 His Kinase A (phospho-acceptor) domain 469 534 6.1E-20 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_1619 c25b02904db9f1dba935300704c85263 972 SMART SM00304 374 426 4.7E-5 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_1619 c25b02904db9f1dba935300704c85263 972 Gene3D G3DSA:3.30.565.10 533 693 1.3E-45 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1619 c25b02904db9f1dba935300704c85263 972 SUPERFAMILY SSF55874 523 688 4.19E-42 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1619 c25b02904db9f1dba935300704c85263 972 PIRSF PIRSF036437 15 968 0.0 T 10-10-2018 IPR014302 Signal transduction histidine kinase, TMAO sensor TorS GO:0000155|GO:0000160|GO:0004673|GO:0016021 VF_1619 c25b02904db9f1dba935300704c85263 972 SMART SM00387 581 692 3.1E-33 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1619 c25b02904db9f1dba935300704c85263 972 SUPERFAMILY SSF47384 458 535 1.69E-20 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_1619 c25b02904db9f1dba935300704c85263 972 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 581 691 3.0E-25 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1619 c25b02904db9f1dba935300704c85263 972 Pfam PF00072 Response regulator receiver domain 713 829 1.1E-20 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1619 c25b02904db9f1dba935300704c85263 972 SMART SM00073 875 971 6.5E-5 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VF_0197 fd9a8c2a89ccff3c2d79ed60f0d804c7 635 Gene3D G3DSA:3.40.50.720 142 265 2.2E-35 T 10-10-2018 VF_0197 fd9a8c2a89ccff3c2d79ed60f0d804c7 635 Pfam PF13727 CoA-binding domain 81 239 6.3E-10 T 10-10-2018 VF_0197 fd9a8c2a89ccff3c2d79ed60f0d804c7 635 Pfam PF02719 Polysaccharide biosynthesis protein 284 581 8.3E-129 T 10-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain VF_0197 fd9a8c2a89ccff3c2d79ed60f0d804c7 635 SUPERFAMILY SSF51735 281 543 1.07E-49 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0197 fd9a8c2a89ccff3c2d79ed60f0d804c7 635 SUPERFAMILY SSF53335 112 327 1.15E-18 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_0197 fd9a8c2a89ccff3c2d79ed60f0d804c7 635 Gene3D G3DSA:3.40.50.720 279 614 1.3E-112 T 10-10-2018 VF_1892 29d657e5e7ca659f2209308187968289 250 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 13 229 1.0E-40 T 10-10-2018 VF_1892 29d657e5e7ca659f2209308187968289 250 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 7 247 29.325 T 10-10-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 VF_A0402 9d2ea95b4109bd6ed9a0cab95f20e06e 236 Pfam PF01048 Phosphorylase superfamily 17 218 4.1E-36 T 10-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VF_A0402 9d2ea95b4109bd6ed9a0cab95f20e06e 236 Gene3D G3DSA:3.40.50.1580 1 236 3.6E-75 T 10-10-2018 VF_A0402 9d2ea95b4109bd6ed9a0cab95f20e06e 236 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 51.43 T 10-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 VF_A0402 9d2ea95b4109bd6ed9a0cab95f20e06e 236 SUPERFAMILY SSF53167 3 234 3.27E-91 T 10-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VF_A0402 9d2ea95b4109bd6ed9a0cab95f20e06e 236 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 234 1.1E-111 T 10-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 VF_A0253 e1d72c22283566c53c584987cd53b7c3 409 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 138 177 - T 10-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VF_A0253 e1d72c22283566c53c584987cd53b7c3 409 TIGRFAM TIGR01882 peptidase-T: peptidase T 2 406 6.1E-166 T 10-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 VF_A0253 e1d72c22283566c53c584987cd53b7c3 409 Gene3D G3DSA:3.40.630.10 4 400 3.8E-174 T 10-10-2018 VF_A0253 e1d72c22283566c53c584987cd53b7c3 409 Hamap MF_00550 Peptidase T [pepT]. 1 404 55.926 T 10-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 VF_A0253 e1d72c22283566c53c584987cd53b7c3 409 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 10-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VF_A0253 e1d72c22283566c53c584987cd53b7c3 409 SUPERFAMILY SSF55031 209 319 4.18E-39 T 10-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VF_A0253 e1d72c22283566c53c584987cd53b7c3 409 Pfam PF01546 Peptidase family M20/M25/M40 139 401 3.4E-13 T 10-10-2018 IPR002933 Peptidase M20 GO:0016787 VF_A0253 e1d72c22283566c53c584987cd53b7c3 409 PIRSF PIRSF037215 1 408 1.0E-182 T 10-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 VF_A0253 e1d72c22283566c53c584987cd53b7c3 409 Gene3D G3DSA:3.30.70.360 209 319 3.8E-174 T 10-10-2018 VF_A0253 e1d72c22283566c53c584987cd53b7c3 409 Pfam PF07687 Peptidase dimerisation domain 206 304 3.9E-9 T 10-10-2018 IPR011650 Peptidase M20, dimerisation domain VF_A0253 e1d72c22283566c53c584987cd53b7c3 409 SUPERFAMILY SSF53187 1 402 1.11E-82 T 10-10-2018 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 Pfam PF00072 Response regulator receiver domain 531 640 2.5E-16 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 SMART SM00387 394 510 2.6E-31 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 SUPERFAMILY SSF47384 270 347 1.96E-16 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 SMART SM00388 282 347 2.8E-16 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 507 3.7E-27 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 Gene3D G3DSA:1.20.120.160 666 788 1.1E-26 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 SMART SM00448 529 640 9.6E-22 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 Pfam PF01627 Hpt domain 698 769 1.4E-10 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 345 2.8E-13 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 SMART SM00091 155 221 5.6E-6 T 10-10-2018 IPR000014 PAS domain VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 SUPERFAMILY SSF52172 528 643 3.84E-24 T 10-10-2018 IPR011006 CheY-like superfamily VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 Pfam PF08448 PAS fold 161 271 4.5E-14 T 10-10-2018 IPR013656 PAS fold-4 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 SUPERFAMILY SSF55874 336 509 1.57E-39 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 Gene3D G3DSA:1.10.287.970 1 89 1.8E-35 T 10-10-2018 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 SUPERFAMILY SSF55785 140 267 1.74E-20 T 10-10-2018 IPR035965 PAS domain superfamily VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 Gene3D G3DSA:3.30.450.20 151 267 9.0E-18 T 10-10-2018 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 Gene3D G3DSA:3.40.50.2300 513 651 3.2E-27 T 10-10-2018 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 SMART SM00073 677 783 0.0011 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 SUPERFAMILY SSF47226 675 786 4.97E-26 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 Gene3D G3DSA:3.30.565.10 348 512 5.5E-42 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 462 1.8E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 488 1.8E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 448 1.8E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 PRINTS PR00344 Bacterial sensor protein C-terminal signature 494 507 1.8E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 PIRSF PIRSF003182 1 788 0.0 T 10-10-2018 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 Gene3D G3DSA:1.10.287.130 268 345 7.3E-21 T 10-10-2018 VF_2122 4a8190e63be5e003cc76e07fe2af57a3 788 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 152 276 6.4E-15 T 10-10-2018 IPR000014 PAS domain VF_2453 0f105418c2f61e39cb4dbed8ccc1ef70 412 Pfam PF00448 SRP54-type protein, GTPase domain 208 408 2.5E-77 T 10-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VF_2453 0f105418c2f61e39cb4dbed8ccc1ef70 412 SMART SM00382 207 387 5.6E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2453 0f105418c2f61e39cb4dbed8ccc1ef70 412 SMART SM00962 208 409 2.4E-124 T 10-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VF_2453 0f105418c2f61e39cb4dbed8ccc1ef70 412 SUPERFAMILY SSF47364 108 187 2.75E-22 T 10-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 VF_2453 0f105418c2f61e39cb4dbed8ccc1ef70 412 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 382 395 - T 10-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VF_2453 0f105418c2f61e39cb4dbed8ccc1ef70 412 Gene3D G3DSA:3.40.50.300 208 397 1.4E-117 T 10-10-2018 VF_2453 0f105418c2f61e39cb4dbed8ccc1ef70 412 SMART SM00963 113 193 2.2E-25 T 10-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VF_2453 0f105418c2f61e39cb4dbed8ccc1ef70 412 Pfam PF02881 SRP54-type protein, helical bundle domain 127 189 1.2E-13 T 10-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VF_2453 0f105418c2f61e39cb4dbed8ccc1ef70 412 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 136 409 64.336 T 10-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 VF_2453 0f105418c2f61e39cb4dbed8ccc1ef70 412 SUPERFAMILY SSF52540 205 409 5.26E-53 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2453 0f105418c2f61e39cb4dbed8ccc1ef70 412 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 136 408 1.8E-113 T 10-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 VF_2453 0f105418c2f61e39cb4dbed8ccc1ef70 412 Gene3D G3DSA:1.20.120.140 110 407 1.4E-117 T 10-10-2018 VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 Gene3D G3DSA:2.40.50.140 66 127 2.7E-27 T 10-10-2018 VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 SUPERFAMILY SSF50104 3 63 2.21E-19 T 10-10-2018 IPR008991 Translation protein SH3-like domain superfamily VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 10-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 62 1.4E-24 T 10-10-2018 IPR013185 Translation elongation factor, KOW-like VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 SUPERFAMILY SSF50249 70 128 7.71E-16 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 SMART SM00841 131 186 1.2E-31 T 10-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 SUPERFAMILY SSF50249 130 187 3.08E-18 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 123 1.2E-20 T 10-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 Hamap MF_00141 Elongation factor P [efp]. 3 187 48.932 T 10-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 TIGRFAM TIGR00038 efp: translation elongation factor P 5 187 1.3E-75 T 10-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 PIRSF PIRSF005901 2 188 6.2E-62 T 10-10-2018 IPR020599 Translation elongation factor P/YeiP VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 SMART SM01185 69 123 2.7E-24 T 10-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 1.5E-25 T 10-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 Gene3D G3DSA:2.40.50.140 130 188 9.9E-28 T 10-10-2018 VF_2338 d4e19bec7e96f0d0e133c21a00a7a6b8 188 Gene3D G3DSA:2.30.30.30 1 64 3.1E-26 T 10-10-2018 IPR014722 Ribosomal protein L2, domain 2 VF_0448 ca1af8f759c16f5ceb0ee79df4eeeace 298 Pfam PF00589 Phage integrase family 113 284 3.3E-54 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VF_0448 ca1af8f759c16f5ceb0ee79df4eeeace 298 SUPERFAMILY SSF56349 7 290 2.0E-58 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VF_0448 ca1af8f759c16f5ceb0ee79df4eeeace 298 Gene3D G3DSA:1.10.150.130 3 98 1.1E-23 T 10-10-2018 IPR010998 Integrase/recombinase, N-terminal VF_0448 ca1af8f759c16f5ceb0ee79df4eeeace 298 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 9 90 1.9E-20 T 10-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 VF_0448 ca1af8f759c16f5ceb0ee79df4eeeace 298 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 298 57.731 T 10-10-2018 IPR023009 Tyrosine recombinase XerC/XerD VF_0448 ca1af8f759c16f5ceb0ee79df4eeeace 298 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 4 298 61.929 T 10-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 VF_0448 ca1af8f759c16f5ceb0ee79df4eeeace 298 Gene3D G3DSA:1.10.443.10 110 292 1.7E-75 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VF_0448 ca1af8f759c16f5ceb0ee79df4eeeace 298 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 9 297 2.5E-119 T 10-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 VF_0613 d0dde8f406180eaa81fc95065e991125 259 Gene3D G3DSA:3.30.2350.10 23 256 2.7E-63 T 10-10-2018 VF_0613 d0dde8f406180eaa81fc95065e991125 259 SUPERFAMILY SSF55120 16 258 4.16E-63 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0613 d0dde8f406180eaa81fc95065e991125 259 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 71 85 - T 10-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0613 d0dde8f406180eaa81fc95065e991125 259 Pfam PF00849 RNA pseudouridylate synthase 31 191 8.8E-32 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 18 604 1.1E-255 T 10-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 Pfam PF00270 DEAD/DEAH box helicase 33 190 8.1E-21 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 SMART SM00487 25 221 1.2E-32 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 19 466 6.2E-190 T 10-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 SUPERFAMILY SSF47819 533 608 3.05E-25 T 10-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 SUPERFAMILY SSF52540 17 204 3.03E-44 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 Gene3D G3DSA:3.40.50.300 8 211 1.5E-84 T 10-10-2018 VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 Gene3D G3DSA:1.10.150.80 527 610 2.3E-26 T 10-10-2018 VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 SMART SM00956 414 517 4.9E-54 T 10-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 Pfam PF00271 Helicase conserved C-terminal domain 229 333 8.3E-18 T 10-10-2018 IPR001650 Helicase, C-terminal VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 Pfam PF16124 RecQ zinc-binding 346 407 3.5E-17 T 10-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 Pfam PF09382 RQC domain 409 517 8.0E-40 T 10-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 SMART SM00341 533 611 4.7E-21 T 10-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 Gene3D G3DSA:1.10.10.10 344 526 9.0E-54 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 SMART SM00490 253 334 3.0E-27 T 10-10-2018 IPR001650 Helicase, C-terminal VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 Gene3D G3DSA:3.40.50.300 212 343 7.7E-42 T 10-10-2018 VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 SUPERFAMILY SSF52540 211 461 2.79E-61 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0070 1ee1c56a5ec290fe8f3244435309ba2a 611 Pfam PF00570 HRDC domain 537 603 1.2E-21 T 10-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 VF_1850 0b9e6f3f6d197f3815ff4727c4fcbac5 265 Pfam PF09811 Essential protein Yae1, N terminal 86 120 1.2E-7 T 10-10-2018 IPR019191 Essential protein Yae1, N-terminal VF_1850 0b9e6f3f6d197f3815ff4727c4fcbac5 265 Pfam PF02108 Flagellar assembly protein FliH 124 250 1.2E-28 T 10-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE VF_0688 a2a76beb6f91527213c7d1090b2cdba1 342 SUPERFAMILY SSF161098 108 322 2.62E-15 T 10-10-2018 IPR035906 MetI-like superfamily VF_0688 a2a76beb6f91527213c7d1090b2cdba1 342 Gene3D G3DSA:1.10.3720.10 104 332 3.2E-18 T 10-10-2018 IPR035906 MetI-like superfamily VF_0688 a2a76beb6f91527213c7d1090b2cdba1 342 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 134 339 1.1E-32 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_A0284 6c99e4c6eb39eef0f04f91f7e1c81554 213 SUPERFAMILY SSF50630 76 206 3.13E-43 T 10-10-2018 IPR021109 Aspartic peptidase domain superfamily VF_A0284 6c99e4c6eb39eef0f04f91f7e1c81554 213 Pfam PF05618 Putative ATP-dependant zinc protease 76 208 3.7E-45 T 10-10-2018 VF_A0284 6c99e4c6eb39eef0f04f91f7e1c81554 213 Gene3D G3DSA:2.40.70.10 72 199 7.7E-43 T 10-10-2018 IPR021109 Aspartic peptidase domain superfamily VF_A0596 b40ba30c03849364726f0ba218cd40d3 204 Gene3D G3DSA:3.80.10.10 23 199 1.0E-7 T 10-10-2018 IPR032675 Leucine-rich repeat domain superfamily VF_0559 4b92f662f7e70923731e18a0b59a20f8 108 SUPERFAMILY SSF48295 4 95 3.3E-29 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 VF_0559 4b92f662f7e70923731e18a0b59a20f8 108 Gene3D G3DSA:1.10.1270.10 2 99 7.7E-33 T 10-10-2018 IPR038116 TrpR-like superfamily VF_0559 4b92f662f7e70923731e18a0b59a20f8 108 TIGRFAM TIGR01321 TrpR: trp operon repressor 6 92 1.6E-26 T 10-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 VF_0559 4b92f662f7e70923731e18a0b59a20f8 108 PIRSF PIRSF003196 1 100 1.5E-37 T 10-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 VF_0559 4b92f662f7e70923731e18a0b59a20f8 108 Hamap MF_00475 Trp operon repressor [trpR]. 6 99 24.573 T 10-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 VF_0559 4b92f662f7e70923731e18a0b59a20f8 108 Pfam PF01371 Trp repressor protein 9 93 8.7E-31 T 10-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 VF_0559 4b92f662f7e70923731e18a0b59a20f8 108 ProDom PD012582 REPRESSOR TRANSCRIPTION TRP OPERON DNA-BINDING REGULATION HOMOLOG AROH FOR TRYPTOPHAN 6 91 2.0E-45 T 10-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 VF_0307 18a8272f185806770b982ff96455d9db 328 Gene3D G3DSA:3.20.20.70 6 247 2.6E-73 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0307 18a8272f185806770b982ff96455d9db 328 SUPERFAMILY SSF51395 8 320 8.06E-78 T 10-10-2018 VF_0307 18a8272f185806770b982ff96455d9db 328 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 89 107 - T 10-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 VF_0307 18a8272f185806770b982ff96455d9db 328 Pfam PF01207 Dihydrouridine synthase (Dus) 11 317 1.5E-94 T 10-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VF_0307 18a8272f185806770b982ff96455d9db 328 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 8 322 1.1E-159 T 10-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 VF_0307 18a8272f185806770b982ff96455d9db 328 Gene3D G3DSA:1.20.120.1460 251 326 3.0E-23 T 10-10-2018 VF_0307 18a8272f185806770b982ff96455d9db 328 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 2 324 53.095 T 10-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 VF_0307 18a8272f185806770b982ff96455d9db 328 PIRSF PIRSF006621 2 322 1.9E-74 T 10-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VF_1439 31cbdaf75ecd6483df1161de29288e16 421 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 166 174 - T 10-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VF_1439 31cbdaf75ecd6483df1161de29288e16 421 SMART SM00487 27 233 1.2E-54 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_1439 31cbdaf75ecd6483df1161de29288e16 421 SUPERFAMILY SSF52540 87 372 2.08E-73 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1439 31cbdaf75ecd6483df1161de29288e16 421 SMART SM00490 269 350 1.9E-32 T 10-10-2018 IPR001650 Helicase, C-terminal VF_1439 31cbdaf75ecd6483df1161de29288e16 421 Pfam PF00270 DEAD/DEAH box helicase 32 209 1.4E-46 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_1439 31cbdaf75ecd6483df1161de29288e16 421 Pfam PF00271 Helicase conserved C-terminal domain 242 350 1.1E-29 T 10-10-2018 IPR001650 Helicase, C-terminal VF_1439 31cbdaf75ecd6483df1161de29288e16 421 Gene3D G3DSA:3.40.50.300 227 420 4.8E-48 T 10-10-2018 VF_1439 31cbdaf75ecd6483df1161de29288e16 421 Gene3D G3DSA:3.40.50.300 2 222 1.5E-72 T 10-10-2018 VF_1214 5a31512b64196243068e11655724d419 642 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 631 3.2E-241 T 10-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VF_1214 5a31512b64196243068e11655724d419 642 SUPERFAMILY SSF52954 529 636 7.4E-32 T 10-10-2018 VF_1214 5a31512b64196243068e11655724d419 642 Gene3D G3DSA:3.40.50.800 532 642 2.7E-32 T 10-10-2018 IPR036621 Anticodon-binding domain superfamily VF_1214 5a31512b64196243068e11655724d419 642 SUPERFAMILY SSF81271 3 61 6.21E-16 T 10-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 VF_1214 5a31512b64196243068e11655724d419 642 SUPERFAMILY SSF55681 243 526 2.79E-99 T 10-10-2018 VF_1214 5a31512b64196243068e11655724d419 642 Gene3D G3DSA:3.30.930.10 223 531 1.5E-129 T 10-10-2018 VF_1214 5a31512b64196243068e11655724d419 642 Gene3D G3DSA:3.30.980.10 69 222 1.4E-63 T 10-10-2018 VF_1214 5a31512b64196243068e11655724d419 642 SMART SM00863 170 219 5.3E-19 T 10-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 VF_1214 5a31512b64196243068e11655724d419 642 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 318 529 6.9E-50 T 10-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_1214 5a31512b64196243068e11655724d419 642 Pfam PF02824 TGS domain 4 61 6.6E-12 T 10-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 VF_1214 5a31512b64196243068e11655724d419 642 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 219 8.4E-14 T 10-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 VF_1214 5a31512b64196243068e11655724d419 642 Gene3D G3DSA:3.30.54.20 130 187 1.4E-63 T 10-10-2018 VF_1214 5a31512b64196243068e11655724d419 642 Pfam PF03129 Anticodon binding domain 541 630 9.2E-23 T 10-10-2018 IPR004154 Anticodon-binding VF_1214 5a31512b64196243068e11655724d419 642 SUPERFAMILY SSF55186 63 241 2.35E-63 T 10-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 VF_1214 5a31512b64196243068e11655724d419 642 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 634 34.125 T 10-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VF_1214 5a31512b64196243068e11655724d419 642 Gene3D G3DSA:3.10.20.30 3 62 2.9E-21 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_1214 5a31512b64196243068e11655724d419 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 9.2E-54 T 10-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VF_1214 5a31512b64196243068e11655724d419 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 9.2E-54 T 10-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VF_1214 5a31512b64196243068e11655724d419 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 9.2E-54 T 10-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VF_1214 5a31512b64196243068e11655724d419 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 9.2E-54 T 10-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VF_1214 5a31512b64196243068e11655724d419 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 9.2E-54 T 10-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VF_2468 4f975e4e871b96f3b17e7cac8d4faea4 226 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 14 34 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2468 4f975e4e871b96f3b17e7cac8d4faea4 226 Gene3D G3DSA:2.10.70.20 160 209 1.7E-16 T 10-10-2018 VF_2468 4f975e4e871b96f3b17e7cac8d4faea4 226 SUPERFAMILY SSF54523 47 211 9.94E-53 T 10-10-2018 VF_2468 4f975e4e871b96f3b17e7cac8d4faea4 226 Pfam PF07963 Prokaryotic N-terminal methylation motif 11 36 1.3E-8 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2468 4f975e4e871b96f3b17e7cac8d4faea4 226 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 14 205 1.7E-73 T 10-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 VF_2468 4f975e4e871b96f3b17e7cac8d4faea4 226 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 14 36 3.0E-8 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2468 4f975e4e871b96f3b17e7cac8d4faea4 226 Pfam PF11612 Type II secretion system (T2SS), protein J 66 203 1.9E-38 T 10-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 VF_2468 4f975e4e871b96f3b17e7cac8d4faea4 226 Gene3D G3DSA:3.10.610.10 45 158 2.9E-33 T 10-10-2018 VF_2199 bb4ce6b1bcef8397e63df0abe4af7ada 256 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 20 244 24.482 T 10-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 VF_2199 bb4ce6b1bcef8397e63df0abe4af7ada 256 Gene3D G3DSA:3.10.20.310 52 120 4.4E-26 T 10-10-2018 VF_2199 bb4ce6b1bcef8397e63df0abe4af7ada 256 Pfam PF08478 POTRA domain, FtsQ-type 51 120 1.1E-20 T 10-10-2018 IPR013685 POTRA domain, FtsQ-type VF_2199 bb4ce6b1bcef8397e63df0abe4af7ada 256 Pfam PF03799 Cell division protein FtsQ 124 236 6.3E-25 T 10-10-2018 IPR005548 Cell division protein FtsQ/DivIB VF_2199 bb4ce6b1bcef8397e63df0abe4af7ada 256 Gene3D G3DSA:3.40.50.11690 122 250 9.2E-40 T 10-10-2018 VF_0372 68296a83753749e9eae25c2bda1cbb93 347 Gene3D G3DSA:3.90.640.10 190 263 4.9E-131 T 10-10-2018 VF_0372 68296a83753749e9eae25c2bda1cbb93 347 Gene3D G3DSA:3.30.420.40 158 321 4.9E-131 T 10-10-2018 VF_0372 68296a83753749e9eae25c2bda1cbb93 347 Gene3D G3DSA:3.30.420.40 14 331 4.9E-131 T 10-10-2018 VF_0372 68296a83753749e9eae25c2bda1cbb93 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 1.7E-65 T 10-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VF_0372 68296a83753749e9eae25c2bda1cbb93 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 1.7E-65 T 10-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VF_0372 68296a83753749e9eae25c2bda1cbb93 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 304 330 1.7E-65 T 10-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VF_0372 68296a83753749e9eae25c2bda1cbb93 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 1.7E-65 T 10-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VF_0372 68296a83753749e9eae25c2bda1cbb93 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 1.7E-65 T 10-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VF_0372 68296a83753749e9eae25c2bda1cbb93 347 Pfam PF06723 MreB/Mbl protein 11 338 3.6E-149 T 10-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VF_0372 68296a83753749e9eae25c2bda1cbb93 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 2.9E-167 T 10-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VF_0372 68296a83753749e9eae25c2bda1cbb93 347 SUPERFAMILY SSF53067 9 152 1.67E-37 T 10-10-2018 VF_0372 68296a83753749e9eae25c2bda1cbb93 347 SUPERFAMILY SSF53067 153 340 3.71E-50 T 10-10-2018 VF_1190 c1274a66a8c3f7f51d10c230b6b3f280 417 Gene3D G3DSA:1.20.1420.20 19 395 3.8E-87 T 10-10-2018 IPR038352 Imelysin-like domain superfamily VF_1190 c1274a66a8c3f7f51d10c230b6b3f280 417 Pfam PF09375 Imelysin 38 395 4.0E-98 T 10-10-2018 IPR018976 Imelysin-like domain VF_A0823 6a12408a15d1d96531d2e69c48b519b8 264 Pfam PF04954 Siderophore-interacting protein 132 246 3.9E-32 T 10-10-2018 IPR007037 Siderophore-interacting protein, C-terminal domain VF_A0823 6a12408a15d1d96531d2e69c48b519b8 264 SUPERFAMILY SSF63380 4 122 1.79E-12 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VF_A0823 6a12408a15d1d96531d2e69c48b519b8 264 Gene3D G3DSA:2.40.30.10 1 124 5.2E-31 T 10-10-2018 VF_A0823 6a12408a15d1d96531d2e69c48b519b8 264 Gene3D G3DSA:3.40.50.80 126 264 1.1E-43 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_A0823 6a12408a15d1d96531d2e69c48b519b8 264 Pfam PF08021 Siderophore-interacting FAD-binding domain 12 124 5.2E-27 T 10-10-2018 IPR013113 FAD-binding 9, siderophore-interacting VF_2425 ec990b673081ef93b8f08a8fbe54ac3c 318 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 7 317 32.631 T 10-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 VF_2425 ec990b673081ef93b8f08a8fbe54ac3c 318 Gene3D G3DSA:3.30.930.10 66 270 2.9E-65 T 10-10-2018 VF_2425 ec990b673081ef93b8f08a8fbe54ac3c 318 Gene3D G3DSA:2.30.30.100 271 318 2.5E-13 T 10-10-2018 VF_2425 ec990b673081ef93b8f08a8fbe54ac3c 318 SUPERFAMILY SSF46785 5 60 3.27E-12 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_2425 ec990b673081ef93b8f08a8fbe54ac3c 318 Gene3D G3DSA:1.10.10.10 1 64 3.3E-22 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2425 ec990b673081ef93b8f08a8fbe54ac3c 318 Pfam PF03099 Biotin/lipoate A/B protein ligase family 85 207 6.1E-19 T 10-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 VF_2425 ec990b673081ef93b8f08a8fbe54ac3c 318 Pfam PF02237 Biotin protein ligase C terminal domain 273 316 1.9E-8 T 10-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VF_2425 ec990b673081ef93b8f08a8fbe54ac3c 318 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 82 315 1.0E-63 T 10-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VF_2425 ec990b673081ef93b8f08a8fbe54ac3c 318 SUPERFAMILY SSF50037 272 317 3.2E-8 T 10-10-2018 IPR008988 Transcriptional repressor, C-terminal VF_2425 ec990b673081ef93b8f08a8fbe54ac3c 318 SUPERFAMILY SSF55681 67 269 1.99E-59 T 10-10-2018 VF_2425 ec990b673081ef93b8f08a8fbe54ac3c 318 Pfam PF08279 HTH domain 8 58 1.7E-13 T 10-10-2018 IPR013196 Helix-turn-helix, type 11 VF_1527 853243d84330216b78ef7d5c41f1c492 353 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 109 119 - T 10-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 VF_1527 853243d84330216b78ef7d5c41f1c492 353 Gene3D G3DSA:3.40.50.1170 22 239 3.6E-87 T 10-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 VF_1527 853243d84330216b78ef7d5c41f1c492 353 PIRSF PIRSF001220 24 353 5.4E-95 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VF_1527 853243d84330216b78ef7d5c41f1c492 353 SMART SM00870 28 347 5.1E-149 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VF_1527 853243d84330216b78ef7d5c41f1c492 353 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 20 353 1.7E-158 T 10-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 VF_1527 853243d84330216b78ef7d5c41f1c492 353 PIRSF PIRSF500176 25 353 3.4E-83 T 10-10-2018 VF_1527 853243d84330216b78ef7d5c41f1c492 353 Pfam PF00710 Asparaginase, N-terminal 28 221 4.0E-63 T 10-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 VF_1527 853243d84330216b78ef7d5c41f1c492 353 SUPERFAMILY SSF53774 26 351 3.53E-108 T 10-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 VF_1527 853243d84330216b78ef7d5c41f1c492 353 Gene3D G3DSA:3.40.50.40 240 353 5.1E-42 T 10-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 VF_1527 853243d84330216b78ef7d5c41f1c492 353 PRINTS PR00139 Asparaginase/glutaminase family signature 287 305 4.0E-24 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VF_1527 853243d84330216b78ef7d5c41f1c492 353 PRINTS PR00139 Asparaginase/glutaminase family signature 108 126 4.0E-24 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VF_1527 853243d84330216b78ef7d5c41f1c492 353 PRINTS PR00139 Asparaginase/glutaminase family signature 29 40 4.0E-24 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VF_1527 853243d84330216b78ef7d5c41f1c492 353 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 31 39 - T 10-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 VF_0241 2b40c66989582c981ae4829e3a0241fc 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 10-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0241 2b40c66989582c981ae4829e3a0241fc 110 SUPERFAMILY SSF54843 1 109 6.02E-44 T 10-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 VF_0241 2b40c66989582c981ae4829e3a0241fc 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 1.4E-48 T 10-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0241 2b40c66989582c981ae4829e3a0241fc 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 29.151 T 10-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0241 2b40c66989582c981ae4829e3a0241fc 110 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 2.5E-38 T 10-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 VF_0241 2b40c66989582c981ae4829e3a0241fc 110 Gene3D G3DSA:3.90.470.10 1 110 4.9E-47 T 10-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 VF_0489 86d6c78bef5cd9b28ef0e517326529a3 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.149 T 10-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0489 86d6c78bef5cd9b28ef0e517326529a3 89 SUPERFAMILY SSF47060 3 89 3.53E-34 T 10-10-2018 IPR009068 S15/NS1, RNA-binding VF_0489 86d6c78bef5cd9b28ef0e517326529a3 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 3.9E-38 T 10-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0489 86d6c78bef5cd9b28ef0e517326529a3 89 Pfam PF00312 Ribosomal protein S15 8 88 5.3E-36 T 10-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0489 86d6c78bef5cd9b28ef0e517326529a3 89 Gene3D G3DSA:1.10.287.10 2 89 4.5E-35 T 10-10-2018 VF_0489 86d6c78bef5cd9b28ef0e517326529a3 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 10-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0489 86d6c78bef5cd9b28ef0e517326529a3 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 1.0E-39 T 10-10-2018 VF_0489 86d6c78bef5cd9b28ef0e517326529a3 89 SMART SM01387 8 88 1.4E-51 T 10-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_1539 32ead18dd4124bec87341e68485c1270 291 SUPERFAMILY SSF82689 196 282 2.62E-5 T 10-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 VF_1539 32ead18dd4124bec87341e68485c1270 291 SUPERFAMILY SSF50182 124 184 5.89E-14 T 10-10-2018 IPR010920 LSM domain superfamily VF_1539 32ead18dd4124bec87341e68485c1270 291 Pfam PF00924 Mechanosensitive ion channel 85 281 6.8E-32 T 10-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VF_1539 32ead18dd4124bec87341e68485c1270 291 Gene3D G3DSA:2.30.30.60 139 186 8.4E-9 T 10-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VF_A0217 13d065209e1b08f37694150b4188c4dd 106 Gene3D G3DSA:1.20.120.160 31 102 1.4E-6 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_A0217 13d065209e1b08f37694150b4188c4dd 106 Pfam PF01627 Hpt domain 34 78 2.9E-6 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VF_A0217 13d065209e1b08f37694150b4188c4dd 106 SUPERFAMILY SSF47226 34 99 5.23E-9 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_A0977 744b1b6cc5e6540937b067cc83e9871c 402 Gene3D G3DSA:1.20.1250.20 15 395 1.0E-44 T 10-10-2018 VF_A0977 744b1b6cc5e6540937b067cc83e9871c 402 Pfam PF07690 Major Facilitator Superfamily 21 357 1.8E-36 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_A0977 744b1b6cc5e6540937b067cc83e9871c 402 SUPERFAMILY SSF103473 11 393 2.22E-53 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0125 8b7a7c49b5a26a0f54415f375d9b4942 116 Pfam PF00581 Rhodanese-like domain 26 102 1.4E-13 T 10-10-2018 IPR001763 Rhodanese-like domain VF_A0125 8b7a7c49b5a26a0f54415f375d9b4942 116 SMART SM00450 21 115 2.0E-23 T 10-10-2018 IPR001763 Rhodanese-like domain VF_A0125 8b7a7c49b5a26a0f54415f375d9b4942 116 Gene3D G3DSA:3.40.250.10 15 115 6.3E-26 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_A0125 8b7a7c49b5a26a0f54415f375d9b4942 116 SUPERFAMILY SSF52821 22 102 1.7E-26 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_A0352 60dfceedccc857b7282d786efa314414 336 SUPERFAMILY SSF51735 1 335 3.51E-95 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0352 60dfceedccc857b7282d786efa314414 336 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 2.0E-55 T 10-10-2018 IPR016040 NAD(P)-binding domain VF_A0352 60dfceedccc857b7282d786efa314414 336 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 335 1.1E-137 T 10-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 VF_A0352 60dfceedccc857b7282d786efa314414 336 Gene3D G3DSA:3.40.50.720 3 274 5.5E-139 T 10-10-2018 VF_A0352 60dfceedccc857b7282d786efa314414 336 Gene3D G3DSA:3.90.25.10 194 329 5.5E-139 T 10-10-2018 VF_A0352 60dfceedccc857b7282d786efa314414 336 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 1.2E-5 T 10-10-2018 VF_A0352 60dfceedccc857b7282d786efa314414 336 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 1.2E-5 T 10-10-2018 VF_A0352 60dfceedccc857b7282d786efa314414 336 PRINTS PR01713 Nucleotide sugar epimerase signature 231 246 1.2E-5 T 10-10-2018 VF_1767 f680f0b997acba88aed14fd530707a3a 73 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 66 4.4E-40 T 10-10-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355 VF_1767 f680f0b997acba88aed14fd530707a3a 73 PIRSF PIRSF002599 1 73 4.1E-23 T 10-10-2018 IPR012156 Cold shock, CspA GO:0003676 VF_1767 f680f0b997acba88aed14fd530707a3a 73 SMART SM00357 3 67 8.3E-27 T 10-10-2018 IPR011129 Cold shock domain GO:0003676 VF_1767 f680f0b997acba88aed14fd530707a3a 73 Gene3D G3DSA:2.40.50.140 1 66 4.9E-25 T 10-10-2018 VF_1767 f680f0b997acba88aed14fd530707a3a 73 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 9.4E-27 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_1767 f680f0b997acba88aed14fd530707a3a 73 SUPERFAMILY SSF50249 1 67 9.86E-23 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1767 f680f0b997acba88aed14fd530707a3a 73 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 10-10-2018 IPR019844 Cold-shock conserved site VF_1767 f680f0b997acba88aed14fd530707a3a 73 PRINTS PR00050 Cold shock protein signature 4 19 1.3E-14 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_1767 f680f0b997acba88aed14fd530707a3a 73 PRINTS PR00050 Cold shock protein signature 25 34 1.3E-14 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_1767 f680f0b997acba88aed14fd530707a3a 73 PRINTS PR00050 Cold shock protein signature 40 58 1.3E-14 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_2094 5639bd30961449249984350d3eb300b9 550 Pfam PF00890 FAD binding domain 21 405 2.4E-105 T 10-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2094 5639bd30961449249984350d3eb300b9 550 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 18 533 6.6E-210 T 10-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 VF_2094 5639bd30961449249984350d3eb300b9 550 SUPERFAMILY SSF46977 439 539 3.01E-31 T 10-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2094 5639bd30961449249984350d3eb300b9 550 Gene3D G3DSA:3.50.50.60 21 417 1.4E-155 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2094 5639bd30961449249984350d3eb300b9 550 Gene3D G3DSA:3.90.700.10 261 371 1.4E-155 T 10-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2094 5639bd30961449249984350d3eb300b9 550 SUPERFAMILY SSF51905 12 460 8.98E-78 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2094 5639bd30961449249984350d3eb300b9 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 368 390 4.8E-10 T 10-10-2018 VF_2094 5639bd30961449249984350d3eb300b9 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 22 41 4.8E-10 T 10-10-2018 VF_2094 5639bd30961449249984350d3eb300b9 550 SUPERFAMILY SSF56425 251 366 1.0E-42 T 10-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2094 5639bd30961449249984350d3eb300b9 550 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 21 43 5.5E-6 T 10-10-2018 VF_2094 5639bd30961449249984350d3eb300b9 550 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 383 390 5.5E-6 T 10-10-2018 VF_2094 5639bd30961449249984350d3eb300b9 550 Pfam PF02910 Fumarate reductase flavoprotein C-term 454 534 2.2E-13 T 10-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2094 5639bd30961449249984350d3eb300b9 550 PIRSF PIRSF000171 348 546 3.7E-12 T 10-10-2018 VF_2094 5639bd30961449249984350d3eb300b9 550 PIRSF PIRSF000171 11 290 1.2E-24 T 10-10-2018 VF_2094 5639bd30961449249984350d3eb300b9 550 Gene3D G3DSA:1.20.58.100 438 550 1.4E-42 T 10-10-2018 VF_2088 94d35b501813f3881795664512a5d51d 300 Pfam PF00717 Peptidase S24-like 86 161 9.9E-22 T 10-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C VF_2088 94d35b501813f3881795664512a5d51d 300 Pfam PF10502 Signal peptidase, peptidase S26 230 270 4.9E-7 T 10-10-2018 IPR019533 Peptidase S26 VF_2088 94d35b501813f3881795664512a5d51d 300 Gene3D G3DSA:2.170.230.10 155 232 4.2E-73 T 10-10-2018 VF_2088 94d35b501813f3881795664512a5d51d 300 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 144 156 3.9E-26 T 10-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 VF_2088 94d35b501813f3881795664512a5d51d 300 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 80 96 3.9E-26 T 10-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 VF_2088 94d35b501813f3881795664512a5d51d 300 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 233 252 3.9E-26 T 10-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 VF_2088 94d35b501813f3881795664512a5d51d 300 ProSitePatterns PS00501 Signal peptidases I serine active site. 89 96 - T 10-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 VF_2088 94d35b501813f3881795664512a5d51d 300 SUPERFAMILY SSF51306 78 298 3.49E-69 T 10-10-2018 IPR036286 LexA/Signal peptidase-like superfamily VF_2088 94d35b501813f3881795664512a5d51d 300 Gene3D G3DSA:2.10.109.10 78 273 4.2E-73 T 10-10-2018 VF_2088 94d35b501813f3881795664512a5d51d 300 ProSitePatterns PS00761 Signal peptidases I signature 3. 238 251 - T 10-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 VF_2088 94d35b501813f3881795664512a5d51d 300 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 66 273 1.8E-45 T 10-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 VF_2088 94d35b501813f3881795664512a5d51d 300 ProSitePatterns PS00760 Signal peptidases I lysine active site. 146 158 - T 10-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01021 OMPA domain signature 232 248 6.7E-6 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01021 OMPA domain signature 186 208 6.7E-6 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01021 OMPA domain signature 217 232 6.7E-6 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 Gene3D G3DSA:3.30.1330.60 175 291 2.2E-37 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 Pfam PF00691 OmpA family 186 281 2.4E-19 T 10-10-2018 IPR006665 OmpA-like domain VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 103 120 3.5E-112 T 10-10-2018 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 250 269 3.5E-112 T 10-10-2018 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 27 43 3.5E-112 T 10-10-2018 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 122 144 3.5E-112 T 10-10-2018 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 84 102 3.5E-112 T 10-10-2018 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 65 83 3.5E-112 T 10-10-2018 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 270 290 3.5E-112 T 10-10-2018 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 147 166 3.5E-112 T 10-10-2018 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 232 249 3.5E-112 T 10-10-2018 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 44 62 3.5E-112 T 10-10-2018 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 173 200 3.5E-112 T 10-10-2018 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 203 229 3.5E-112 T 10-10-2018 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 Gene3D G3DSA:2.60.40.2540 21 174 2.7E-53 T 10-10-2018 VF_0926 fc19efe2ae4442432852c7e8ecc3b839 292 SUPERFAMILY SSF103088 156 286 2.49E-28 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_1895 6ab60effcb850f479d566d71469a46c4 574 SUPERFAMILY SSF52009 125 244 1.44E-34 T 10-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 VF_1895 6ab60effcb850f479d566d71469a46c4 574 PIRSF PIRSF000732 1 574 3.3E-217 T 10-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 VF_1895 6ab60effcb850f479d566d71469a46c4 574 Gene3D G3DSA:3.50.30.10 4 233 3.5E-79 T 10-10-2018 VF_1895 6ab60effcb850f479d566d71469a46c4 574 SUPERFAMILY SSF51621 249 549 9.16E-110 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VF_1895 6ab60effcb850f479d566d71469a46c4 574 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 126 9.7E-31 T 10-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 VF_1895 6ab60effcb850f479d566d71469a46c4 574 Gene3D G3DSA:3.20.20.60 234 574 1.1E-124 T 10-10-2018 VF_1895 6ab60effcb850f479d566d71469a46c4 574 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 4.6E-30 T 10-10-2018 VF_1895 6ab60effcb850f479d566d71469a46c4 574 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 4.6E-30 T 10-10-2018 VF_1895 6ab60effcb850f479d566d71469a46c4 574 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 4.6E-30 T 10-10-2018 VF_1895 6ab60effcb850f479d566d71469a46c4 574 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 4.6E-30 T 10-10-2018 VF_1895 6ab60effcb850f479d566d71469a46c4 574 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 10-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 VF_1895 6ab60effcb850f479d566d71469a46c4 574 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 250 540 2.2E-123 T 10-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 VF_1895 6ab60effcb850f479d566d71469a46c4 574 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 222 7.1E-21 T 10-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 VF_1895 6ab60effcb850f479d566d71469a46c4 574 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 565 2.5E-245 T 10-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 VF_1895 6ab60effcb850f479d566d71469a46c4 574 Gene3D G3DSA:1.10.274.10 21 146 3.5E-79 T 10-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 VF_1895 6ab60effcb850f479d566d71469a46c4 574 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 10-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 VF_1895 6ab60effcb850f479d566d71469a46c4 574 SUPERFAMILY SSF47831 24 143 9.68E-32 T 10-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 VF_2134 6c22cc675ca9aef6daacffcba565fe00 113 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 9 113 4.0E-38 T 10-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 VF_2134 6c22cc675ca9aef6daacffcba565fe00 113 Gene3D G3DSA:2.60.300.12 7 113 2.6E-33 T 10-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VF_2134 6c22cc675ca9aef6daacffcba565fe00 113 Pfam PF01521 Iron-sulphur cluster biosynthesis 8 108 2.4E-20 T 10-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 VF_2134 6c22cc675ca9aef6daacffcba565fe00 113 SUPERFAMILY SSF89360 7 99 3.92E-31 T 10-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VF_2134 6c22cc675ca9aef6daacffcba565fe00 113 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 94 111 - T 10-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 VF_2134 6c22cc675ca9aef6daacffcba565fe00 113 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 113 36.404 T 10-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 VF_2523 196315f9b40f44d286dc981440e601fa 368 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 353 3.5E-78 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VF_2523 196315f9b40f44d286dc981440e601fa 368 Gene3D G3DSA:1.10.287.470 103 162 1.2E-77 T 10-10-2018 VF_2523 196315f9b40f44d286dc981440e601fa 368 Gene3D G3DSA:2.40.50.100 68 196 1.2E-77 T 10-10-2018 VF_2523 196315f9b40f44d286dc981440e601fa 368 Gene3D G3DSA:2.40.420.20 280 351 1.2E-77 T 10-10-2018 VF_2523 196315f9b40f44d286dc981440e601fa 368 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 57 269 5.7E-30 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VF_2523 196315f9b40f44d286dc981440e601fa 368 Gene3D G3DSA:2.40.30.170 56 279 1.2E-77 T 10-10-2018 VF_2523 196315f9b40f44d286dc981440e601fa 368 SUPERFAMILY SSF111369 57 273 8.76E-43 T 10-10-2018 VF_0011 14b93892c3b6dac5ff338498a5076f42 359 ProSitePatterns PS00618 RecF protein signature 2. 299 317 - T 10-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 VF_0011 14b93892c3b6dac5ff338498a5076f42 359 ProSitePatterns PS00617 RecF protein signature 1. 118 138 - T 10-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 VF_0011 14b93892c3b6dac5ff338498a5076f42 359 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 359 97.943 T 10-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 VF_0011 14b93892c3b6dac5ff338498a5076f42 359 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 356 1.2E-121 T 10-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 VF_0011 14b93892c3b6dac5ff338498a5076f42 359 SUPERFAMILY SSF52540 1 343 4.12E-43 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0011 14b93892c3b6dac5ff338498a5076f42 359 Gene3D G3DSA:1.20.1050.90 121 298 1.9E-82 T 10-10-2018 VF_0011 14b93892c3b6dac5ff338498a5076f42 359 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 349 1.4E-36 T 10-10-2018 IPR003395 RecF/RecN/SMC, N-terminal VF_0011 14b93892c3b6dac5ff338498a5076f42 359 Gene3D G3DSA:3.40.50.300 8 332 1.9E-82 T 10-10-2018 VF_0587 4d62dbcf5918f519bba891a006837d75 366 SMART SM00925 120 253 1.4E-67 T 10-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 VF_0587 4d62dbcf5918f519bba891a006837d75 366 Gene3D G3DSA:2.40.240.50 120 258 1.4E-129 T 10-10-2018 VF_0587 4d62dbcf5918f519bba891a006837d75 366 Gene3D G3DSA:2.40.40.10 52 349 1.4E-129 T 10-10-2018 IPR036908 RlpA-like domain superfamily VF_0587 4d62dbcf5918f519bba891a006837d75 366 Pfam PF06725 3D domain 273 349 1.6E-18 T 10-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 VF_0587 4d62dbcf5918f519bba891a006837d75 366 SUPERFAMILY SSF50685 22 351 1.43E-99 T 10-10-2018 IPR036908 RlpA-like domain superfamily VF_0587 4d62dbcf5918f519bba891a006837d75 366 Pfam PF03562 MltA specific insert domain 77 252 1.2E-37 T 10-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 VF_0587 4d62dbcf5918f519bba891a006837d75 366 PIRSF PIRSF019422 1 141 3.9E-10 T 10-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A VF_0587 4d62dbcf5918f519bba891a006837d75 366 PIRSF PIRSF019422 143 359 1.4E-59 T 10-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A VF_0433 160ece711479178eb8606a4906b079dd 141 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 7 137 1.9E-48 T 10-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 VF_0433 160ece711479178eb8606a4906b079dd 141 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 4 140 23.663 T 10-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 VF_0433 160ece711479178eb8606a4906b079dd 141 Gene3D G3DSA:3.30.420.140 2 139 5.4E-39 T 10-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 VF_0433 160ece711479178eb8606a4906b079dd 141 SMART SM00732 4 105 1.0E-34 T 10-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 VF_0433 160ece711479178eb8606a4906b079dd 141 Pfam PF03652 Holliday junction resolvase 5 137 2.3E-35 T 10-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 VF_0433 160ece711479178eb8606a4906b079dd 141 SUPERFAMILY SSF53098 4 138 1.26E-36 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_1964 da7c5015d924435c57cadf0420e29107 873 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 873 329.732 T 10-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 VF_1964 da7c5015d924435c57cadf0420e29107 873 Pfam PF01966 HD domain 451 584 1.5E-13 T 10-10-2018 IPR006674 HD domain VF_1964 da7c5015d924435c57cadf0420e29107 873 SUPERFAMILY SSF81301 42 169 2.21E-20 T 10-10-2018 VF_1964 da7c5015d924435c57cadf0420e29107 873 Pfam PF08335 GlnD PII-uridylyltransferase 176 314 2.8E-35 T 10-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 VF_1964 da7c5015d924435c57cadf0420e29107 873 SUPERFAMILY SSF55021 796 857 1.72E-9 T 10-10-2018 VF_1964 da7c5015d924435c57cadf0420e29107 873 PIRSF PIRSF006288 8 873 0.0 T 10-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 VF_1964 da7c5015d924435c57cadf0420e29107 873 SUPERFAMILY SSF55021 690 760 1.34E-8 T 10-10-2018 VF_1964 da7c5015d924435c57cadf0420e29107 873 SUPERFAMILY SSF109604 417 586 4.08E-13 T 10-10-2018 VF_1964 da7c5015d924435c57cadf0420e29107 873 Gene3D G3DSA:1.10.3210.10 437 604 6.7E-8 T 10-10-2018 VF_1964 da7c5015d924435c57cadf0420e29107 873 Pfam PF01842 ACT domain 802 845 1.5E-6 T 10-10-2018 IPR002912 ACT domain VF_1964 da7c5015d924435c57cadf0420e29107 873 Pfam PF01909 Nucleotidyltransferase domain 55 118 6.2E-7 T 10-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 VF_1964 da7c5015d924435c57cadf0420e29107 873 SUPERFAMILY SSF81593 196 309 9.42E-10 T 10-10-2018 VF_1964 da7c5015d924435c57cadf0420e29107 873 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 30 868 0.0 T 10-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 VF_1964 da7c5015d924435c57cadf0420e29107 873 SMART SM00471 447 594 3.2E-9 T 10-10-2018 IPR003607 HD/PDEase domain VF_1517 800a53e18986395a3c5f984a567c6ee1 606 Gene3D G3DSA:3.30.420.40 211 359 4.9E-36 T 10-10-2018 VF_1517 800a53e18986395a3c5f984a567c6ee1 606 Gene3D G3DSA:3.90.640.10 254 341 4.9E-36 T 10-10-2018 VF_1517 800a53e18986395a3c5f984a567c6ee1 606 PRINTS PR00301 70kDa heat shock protein signature 224 234 2.9E-8 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1517 800a53e18986395a3c5f984a567c6ee1 606 PRINTS PR00301 70kDa heat shock protein signature 6 19 2.9E-8 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1517 800a53e18986395a3c5f984a567c6ee1 606 PRINTS PR00301 70kDa heat shock protein signature 397 417 2.9E-8 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1517 800a53e18986395a3c5f984a567c6ee1 606 PRINTS PR00301 70kDa heat shock protein signature 157 177 2.9E-8 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1517 800a53e18986395a3c5f984a567c6ee1 606 SUPERFAMILY SSF53067 213 456 1.61E-26 T 10-10-2018 VF_1517 800a53e18986395a3c5f984a567c6ee1 606 SUPERFAMILY SSF53067 5 199 1.18E-29 T 10-10-2018 VF_1517 800a53e18986395a3c5f984a567c6ee1 606 Pfam PF00012 Hsp70 protein 8 331 2.8E-15 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1517 800a53e18986395a3c5f984a567c6ee1 606 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 10 17 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VF_1517 800a53e18986395a3c5f984a567c6ee1 606 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 218 231 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VF_1517 800a53e18986395a3c5f984a567c6ee1 606 Gene3D G3DSA:3.30.420.40 8 202 4.9E-36 T 10-10-2018 VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 234 249 - T 10-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 361 370 - T 10-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 SUPERFAMILY SSF46689 361 469 2.9E-12 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 SMART SM00448 10 121 8.9E-31 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 Gene3D G3DSA:3.40.50.300 134 319 2.0E-62 T 10-10-2018 VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 Gene3D G3DSA:1.10.10.60 424 470 1.0E-13 T 10-10-2018 VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 Pfam PF02954 Bacterial regulatory protein, Fis family 429 470 2.2E-10 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 Pfam PF00072 Response regulator receiver domain 12 122 1.3E-24 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 Gene3D G3DSA:3.40.50.2300 11 128 4.1E-31 T 10-10-2018 VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 SUPERFAMILY SSF52172 10 194 1.99E-38 T 10-10-2018 IPR011006 CheY-like superfamily VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 SUPERFAMILY SSF52540 148 378 2.5E-66 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 Gene3D G3DSA:1.10.8.60 320 407 1.5E-17 T 10-10-2018 VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 173 186 - T 10-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 SMART SM00382 169 312 5.3E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 436 453 2.3E-5 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 453 473 2.3E-5 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_1401 e88ebb875713b64c84dceeaa9961ebcc 475 Pfam PF00158 Sigma-54 interaction domain 149 314 2.3E-66 T 10-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VF_2555 63c7ecbed41b22511e5600cc1f397ea2 508 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 290 305 - T 10-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VF_2555 63c7ecbed41b22511e5600cc1f397ea2 508 SMART SM00382 211 391 1.2E-5 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2555 63c7ecbed41b22511e5600cc1f397ea2 508 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 402 494 1.7E-30 T 10-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain VF_2555 63c7ecbed41b22511e5600cc1f397ea2 508 Pfam PF01078 Magnesium chelatase, subunit ChlI 191 392 1.3E-89 T 10-10-2018 IPR000523 Magnesium chelatase ChlI domain VF_2555 63c7ecbed41b22511e5600cc1f397ea2 508 SUPERFAMILY SSF52540 190 501 1.77E-43 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2555 63c7ecbed41b22511e5600cc1f397ea2 508 SUPERFAMILY SSF54211 2 167 9.48E-29 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_2555 63c7ecbed41b22511e5600cc1f397ea2 508 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 290 304 6.1E-5 T 10-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 VF_2555 63c7ecbed41b22511e5600cc1f397ea2 508 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 210 225 6.1E-5 T 10-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 VF_2555 63c7ecbed41b22511e5600cc1f397ea2 508 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 318 331 6.1E-5 T 10-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 VF_2555 63c7ecbed41b22511e5600cc1f397ea2 508 Gene3D G3DSA:3.30.230.10 1 161 5.2E-5 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_2555 63c7ecbed41b22511e5600cc1f397ea2 508 Gene3D G3DSA:3.40.50.300 187 501 3.3E-54 T 10-10-2018 VF_2555 63c7ecbed41b22511e5600cc1f397ea2 508 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 2.4E-45 T 10-10-2018 VF_2555 63c7ecbed41b22511e5600cc1f397ea2 508 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 494 6.8E-211 T 10-10-2018 IPR004482 Mg chelatase-related protein VF_1629 eaccd5459e6e625c232f7b924bdb9c92 258 SUPERFAMILY SSF81301 37 84 1.21E-6 T 10-10-2018 VF_0837 135aef19821a1e13dfe04b4188870d31 398 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 202 219 - T 10-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_0837 135aef19821a1e13dfe04b4188870d31 398 Gene3D G3DSA:3.30.420.40 2 194 4.5E-72 T 10-10-2018 VF_0837 135aef19821a1e13dfe04b4188870d31 398 TIGRFAM TIGR00016 ackA: acetate kinase 2 396 4.2E-169 T 10-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_0837 135aef19821a1e13dfe04b4188870d31 398 PIRSF PIRSF000722 1 397 1.1E-145 T 10-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_0837 135aef19821a1e13dfe04b4188870d31 398 Hamap MF_00020 Acetate kinase [ackA]. 1 398 186.613 T 10-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_0837 135aef19821a1e13dfe04b4188870d31 398 PRINTS PR00471 Acetate kinase family signature 172 185 3.6E-45 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_0837 135aef19821a1e13dfe04b4188870d31 398 PRINTS PR00471 Acetate kinase family signature 377 389 3.6E-45 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_0837 135aef19821a1e13dfe04b4188870d31 398 PRINTS PR00471 Acetate kinase family signature 298 311 3.6E-45 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_0837 135aef19821a1e13dfe04b4188870d31 398 PRINTS PR00471 Acetate kinase family signature 321 337 3.6E-45 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_0837 135aef19821a1e13dfe04b4188870d31 398 PRINTS PR00471 Acetate kinase family signature 202 223 3.6E-45 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_0837 135aef19821a1e13dfe04b4188870d31 398 PRINTS PR00471 Acetate kinase family signature 5 16 3.6E-45 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_0837 135aef19821a1e13dfe04b4188870d31 398 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 10-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_0837 135aef19821a1e13dfe04b4188870d31 398 Gene3D G3DSA:3.30.420.40 195 397 2.3E-82 T 10-10-2018 VF_0837 135aef19821a1e13dfe04b4188870d31 398 SUPERFAMILY SSF53067 156 395 9.97E-85 T 10-10-2018 VF_0837 135aef19821a1e13dfe04b4188870d31 398 SUPERFAMILY SSF53067 3 195 2.98E-63 T 10-10-2018 VF_0837 135aef19821a1e13dfe04b4188870d31 398 Pfam PF00871 Acetokinase family 5 390 1.6E-163 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_1419 0009041837570696138576258c8ce904 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 7.7E-17 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1419 0009041837570696138576258c8ce904 304 Gene3D G3DSA:1.10.10.10 1 90 3.1E-24 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1419 0009041837570696138576258c8ce904 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 9.2E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1419 0009041837570696138576258c8ce904 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 9.2E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1419 0009041837570696138576258c8ce904 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 9.2E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1419 0009041837570696138576258c8ce904 304 SUPERFAMILY SSF53850 92 298 3.44E-35 T 10-10-2018 VF_1419 0009041837570696138576258c8ce904 304 Gene3D G3DSA:3.40.190.10 92 296 1.0E-47 T 10-10-2018 VF_1419 0009041837570696138576258c8ce904 304 Gene3D G3DSA:3.40.190.10 173 271 1.0E-47 T 10-10-2018 VF_1419 0009041837570696138576258c8ce904 304 SUPERFAMILY SSF46785 5 87 1.12E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1419 0009041837570696138576258c8ce904 304 Pfam PF03466 LysR substrate binding domain 100 300 4.8E-22 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1743 d1a8c40b1ca716048cc0e8433879dbfd 341 PIRSF PIRSF002465 2 339 1.1E-123 T 10-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 VF_1743 d1a8c40b1ca716048cc0e8433879dbfd 341 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 340 135.577 T 10-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 VF_1743 d1a8c40b1ca716048cc0e8433879dbfd 341 Pfam PF02504 Fatty acid synthesis protein 5 326 1.1E-100 T 10-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 VF_1743 d1a8c40b1ca716048cc0e8433879dbfd 341 SUPERFAMILY SSF53659 4 336 4.52E-103 T 10-10-2018 VF_1743 d1a8c40b1ca716048cc0e8433879dbfd 341 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 5 335 1.8E-108 T 10-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 VF_1743 d1a8c40b1ca716048cc0e8433879dbfd 341 Gene3D G3DSA:3.40.718.10 2 340 1.5E-119 T 10-10-2018 VF_A0166 55fa89d4b940365f11bc698b358e0f6a 307 Pfam PF01145 SPFH domain / Band 7 family 26 195 1.2E-34 T 10-10-2018 IPR001107 Band 7 domain VF_A0166 55fa89d4b940365f11bc698b358e0f6a 307 PRINTS PR00721 Stomatin signature 132 155 1.8E-28 T 10-10-2018 IPR001972 Stomatin family GO:0016020 VF_A0166 55fa89d4b940365f11bc698b358e0f6a 307 PRINTS PR00721 Stomatin signature 77 98 1.8E-28 T 10-10-2018 IPR001972 Stomatin family GO:0016020 VF_A0166 55fa89d4b940365f11bc698b358e0f6a 307 PRINTS PR00721 Stomatin signature 175 196 1.8E-28 T 10-10-2018 IPR001972 Stomatin family GO:0016020 VF_A0166 55fa89d4b940365f11bc698b358e0f6a 307 PRINTS PR00721 Stomatin signature 112 129 1.8E-28 T 10-10-2018 IPR001972 Stomatin family GO:0016020 VF_A0166 55fa89d4b940365f11bc698b358e0f6a 307 PRINTS PR00721 Stomatin signature 156 174 1.8E-28 T 10-10-2018 IPR001972 Stomatin family GO:0016020 VF_A0166 55fa89d4b940365f11bc698b358e0f6a 307 Gene3D G3DSA:3.30.479.30 50 182 3.1E-43 T 10-10-2018 VF_A0166 55fa89d4b940365f11bc698b358e0f6a 307 ProSitePatterns PS01270 Band 7 protein family signature. 136 164 - T 10-10-2018 IPR018080 Band 7/stomatin-like, conserved site VF_A0166 55fa89d4b940365f11bc698b358e0f6a 307 SUPERFAMILY SSF117892 53 187 6.54E-41 T 10-10-2018 IPR036013 Band 7/SPFH domain superfamily VF_A0166 55fa89d4b940365f11bc698b358e0f6a 307 SMART SM00244 22 180 8.7E-58 T 10-10-2018 IPR001107 Band 7 domain VF_2170 5197c2762ccc0cdb45ed8a428c7ed835 291 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 281 1.6E-102 T 10-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 VF_2170 5197c2762ccc0cdb45ed8a428c7ed835 291 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 39.656 T 10-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 VF_2170 5197c2762ccc0cdb45ed8a428c7ed835 291 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 23 71 6.8E-10 T 10-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VF_2170 5197c2762ccc0cdb45ed8a428c7ed835 291 Gene3D G3DSA:3.30.1300.10 181 283 5.4E-28 T 10-10-2018 VF_2170 5197c2762ccc0cdb45ed8a428c7ed835 291 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 4.0E-102 T 10-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 VF_2170 5197c2762ccc0cdb45ed8a428c7ed835 291 Gene3D G3DSA:3.40.50.620 1 179 5.1E-80 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_2170 5197c2762ccc0cdb45ed8a428c7ed835 291 SUPERFAMILY SSF52374 1 281 1.1E-105 T 10-10-2018 VF_2436 af88e9e247f04a426c5382a68a281e73 368 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 10 368 1.5E-181 T 10-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 VF_2436 af88e9e247f04a426c5382a68a281e73 368 Gene3D G3DSA:3.40.1350.30 45 189 4.9E-138 T 10-10-2018 VF_2436 af88e9e247f04a426c5382a68a281e73 368 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 350 360 - T 10-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site VF_2436 af88e9e247f04a426c5382a68a281e73 368 SUPERFAMILY SSF53335 10 367 6.01E-53 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_2436 af88e9e247f04a426c5382a68a281e73 368 Gene3D G3DSA:3.40.50.150 14 363 4.9E-138 T 10-10-2018 VF_2436 af88e9e247f04a426c5382a68a281e73 368 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 10 368 8.3E-185 T 10-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 VF_2436 af88e9e247f04a426c5382a68a281e73 368 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 368 44.211 T 10-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 VF_2436 af88e9e247f04a426c5382a68a281e73 368 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 301 330 - T 10-10-2018 IPR030390 RNA methyltransferase TrmA, active site VF_A0319 7a69e0aee8a3b9f5c175a0943c69d2db 315 Pfam PF09084 NMT1/THI5 like 37 249 4.4E-70 T 10-10-2018 IPR015168 SsuA/THI5-like VF_A0319 7a69e0aee8a3b9f5c175a0943c69d2db 315 SUPERFAMILY SSF53850 29 309 4.42E-48 T 10-10-2018 VF_A0319 7a69e0aee8a3b9f5c175a0943c69d2db 315 Gene3D G3DSA:3.40.190.10 109 209 2.2E-73 T 10-10-2018 VF_A0319 7a69e0aee8a3b9f5c175a0943c69d2db 315 Gene3D G3DSA:3.40.190.10 28 302 2.2E-73 T 10-10-2018 VF_A1064 27e35f105505e60178046c2733b6c8df 336 Pfam PF03547 Membrane transport protein 186 324 3.8E-11 T 10-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 PRINTS PR00301 70kDa heat shock protein signature 53 61 4.6E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 PRINTS PR00301 70kDa heat shock protein signature 468 484 4.6E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 PRINTS PR00301 70kDa heat shock protein signature 137 157 4.6E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 PRINTS PR00301 70kDa heat shock protein signature 387 406 4.6E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 PRINTS PR00301 70kDa heat shock protein signature 3 16 4.6E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 PRINTS PR00301 70kDa heat shock protein signature 31 43 4.6E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 PRINTS PR00301 70kDa heat shock protein signature 364 384 4.6E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 PRINTS PR00301 70kDa heat shock protein signature 197 207 4.6E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 PRINTS PR00301 70kDa heat shock protein signature 333 349 4.6E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 SUPERFAMILY SSF100934 534 607 7.06E-7 T 10-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 Gene3D G3DSA:2.60.34.10 382 522 6.3E-65 T 10-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 Gene3D G3DSA:3.30.420.40 5 378 1.2E-163 T 10-10-2018 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 Gene3D G3DSA:1.20.1270.10 523 602 6.2E-27 T 10-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 SUPERFAMILY SSF53067 186 381 3.4E-64 T 10-10-2018 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 Gene3D G3DSA:3.90.640.10 228 315 1.2E-163 T 10-10-2018 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 Gene3D G3DSA:3.30.420.40 179 365 1.2E-163 T 10-10-2018 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 336 350 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 631 35.745 T 10-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 4.9E-280 T 10-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 SUPERFAMILY SSF53067 1 182 6.74E-64 T 10-10-2018 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 SUPERFAMILY SSF100920 383 539 2.09E-59 T 10-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 VF_1994 75a136f30e52b9360ea2c655cc036c3a 634 Pfam PF00012 Hsp70 protein 4 601 1.7E-258 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_0297 e85dbe6cb3a1b02face41e29cba0a9bb 439 Gene3D G3DSA:2.40.420.20 362 425 1.1E-29 T 10-10-2018 VF_0297 e85dbe6cb3a1b02face41e29cba0a9bb 439 SUPERFAMILY SSF111369 60 357 3.66E-9 T 10-10-2018 VF_0297 e85dbe6cb3a1b02face41e29cba0a9bb 439 Gene3D G3DSA:2.40.50.100 66 252 1.1E-29 T 10-10-2018 VF_0297 e85dbe6cb3a1b02face41e29cba0a9bb 439 Gene3D G3DSA:1.10.287.470 103 218 1.1E-29 T 10-10-2018 VF_0297 e85dbe6cb3a1b02face41e29cba0a9bb 439 Gene3D G3DSA:2.40.30.170 60 361 1.1E-29 T 10-10-2018 VF_1038 8a05f5e4a09045f5b81c874acd734ea3 354 Gene3D G3DSA:3.10.290.10 1 60 3.5E-19 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VF_1038 8a05f5e4a09045f5b81c874acd734ea3 354 Gene3D G3DSA:3.30.70.1560 130 220 7.1E-48 T 10-10-2018 VF_1038 8a05f5e4a09045f5b81c874acd734ea3 354 SMART SM00363 3 73 8.3E-7 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_1038 8a05f5e4a09045f5b81c874acd734ea3 354 Pfam PF00849 RNA pseudouridylate synthase 68 201 2.1E-17 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1038 8a05f5e4a09045f5b81c874acd734ea3 354 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 106 120 - T 10-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 VF_1038 8a05f5e4a09045f5b81c874acd734ea3 354 Gene3D G3DSA:3.30.70.580 70 228 7.1E-48 T 10-10-2018 VF_1038 8a05f5e4a09045f5b81c874acd734ea3 354 SUPERFAMILY SSF55120 68 237 4.52E-41 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1038 8a05f5e4a09045f5b81c874acd734ea3 354 Pfam PF01479 S4 domain 4 43 4.3E-11 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_1038 8a05f5e4a09045f5b81c874acd734ea3 354 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 72 232 1.5E-53 T 10-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 VF_1038 8a05f5e4a09045f5b81c874acd734ea3 354 SUPERFAMILY SSF55174 4 97 3.7E-12 T 10-10-2018 VF_A1161 764379225ce6ccaaf8d27804de0e1e83 211 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 1 211 4.9E-88 T 10-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VF_A1161 764379225ce6ccaaf8d27804de0e1e83 211 Gene3D G3DSA:2.30.110.10 13 211 1.4E-77 T 10-10-2018 IPR012349 FMN-binding split barrel GO:0048037 VF_A1161 764379225ce6ccaaf8d27804de0e1e83 211 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 9 211 37.727 T 10-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VF_A1161 764379225ce6ccaaf8d27804de0e1e83 211 SUPERFAMILY SSF50475 14 211 3.74E-65 T 10-10-2018 VF_A1161 764379225ce6ccaaf8d27804de0e1e83 211 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 181 194 - T 10-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VF_A1161 764379225ce6ccaaf8d27804de0e1e83 211 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 33 116 3.7E-24 T 10-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VF_A1161 764379225ce6ccaaf8d27804de0e1e83 211 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 171 211 4.4E-19 T 10-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VF_A1161 764379225ce6ccaaf8d27804de0e1e83 211 PIRSF PIRSF000190 1 211 1.9E-79 T 10-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VF_A0640 46d3874c35b3f8085ec6d1f7cbf33084 136 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 127 1.7E-12 T 10-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VF_A0640 46d3874c35b3f8085ec6d1f7cbf33084 136 Gene3D G3DSA:3.10.180.10 6 135 2.5E-33 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_A0640 46d3874c35b3f8085ec6d1f7cbf33084 136 SUPERFAMILY SSF54593 2 132 7.79E-25 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_0899 98451b0a70e8fe75f399c5b02256eecc 360 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 187 206 - T 10-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site VF_0899 98451b0a70e8fe75f399c5b02256eecc 360 Gene3D G3DSA:3.90.1150.10 257 360 8.1E-41 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_0899 98451b0a70e8fe75f399c5b02256eecc 360 SUPERFAMILY SSF53383 1 358 1.2E-116 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_0899 98451b0a70e8fe75f399c5b02256eecc 360 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 359 51.97 T 10-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 VF_0899 98451b0a70e8fe75f399c5b02256eecc 360 Gene3D G3DSA:3.40.640.10 17 256 4.8E-92 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_0899 98451b0a70e8fe75f399c5b02256eecc 360 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 359 1.5E-160 T 10-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 VF_0899 98451b0a70e8fe75f399c5b02256eecc 360 PIRSF PIRSF000525 1 360 9.5E-154 T 10-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 VF_0899 98451b0a70e8fe75f399c5b02256eecc 360 Pfam PF00266 Aminotransferase class-V 4 348 8.4E-64 T 10-10-2018 IPR000192 Aminotransferase class V domain VF_A0990 05b5b3b0cdc435f952370d8da276feef 882 SUPERFAMILY SSF53706 41 649 2.75E-150 T 10-10-2018 VF_A0990 05b5b3b0cdc435f952370d8da276feef 882 Gene3D G3DSA:2.40.40.20 631 785 1.8E-36 T 10-10-2018 VF_A0990 05b5b3b0cdc435f952370d8da276feef 882 Pfam PF01568 Molydopterin dinucleotide binding domain 656 771 2.8E-25 T 10-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VF_A0990 05b5b3b0cdc435f952370d8da276feef 882 Pfam PF00384 Molybdopterin oxidoreductase 88 546 2.8E-63 T 10-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A0990 05b5b3b0cdc435f952370d8da276feef 882 SUPERFAMILY SSF46626 824 877 1.68E-5 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_A0990 05b5b3b0cdc435f952370d8da276feef 882 Gene3D G3DSA:3.40.50.740 88 555 1.3E-167 T 10-10-2018 VF_A0990 05b5b3b0cdc435f952370d8da276feef 882 SUPERFAMILY SSF50692 654 794 9.27E-35 T 10-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VF_A0990 05b5b3b0cdc435f952370d8da276feef 882 Gene3D G3DSA:3.40.228.10 182 622 1.3E-167 T 10-10-2018 VF_A0990 05b5b3b0cdc435f952370d8da276feef 882 Gene3D G3DSA:3.90.55.10 83 597 1.3E-167 T 10-10-2018 VF_A0515 d925c8b2ec9d95a9a44fae1b2c7fdbdf 217 Pfam PF11726 Inovirus Gp2 38 215 2.9E-72 T 10-10-2018 VF_0244 2001852c8bf9fea366c741665dc19b07 63 Pfam PF00831 Ribosomal L29 protein 4 60 3.1E-24 T 10-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0244 2001852c8bf9fea366c741665dc19b07 63 SUPERFAMILY SSF46561 1 61 4.06E-23 T 10-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0244 2001852c8bf9fea366c741665dc19b07 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 2.2E-22 T 10-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0244 2001852c8bf9fea366c741665dc19b07 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 10-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0244 2001852c8bf9fea366c741665dc19b07 63 Gene3D G3DSA:1.10.287.310 1 63 1.4E-30 T 10-10-2018 VF_0244 2001852c8bf9fea366c741665dc19b07 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 19.021 T 10-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0229 6086bdb1efb8b11abeb7ddcc3a44c50e 118 Gene3D G3DSA:3.40.1260.10 1 118 2.4E-37 T 10-10-2018 IPR027396 DsrEFH-like VF_0229 6086bdb1efb8b11abeb7ddcc3a44c50e 118 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 4 118 1.2E-47 T 10-10-2018 IPR017462 Sulphur relay, TusC/DsrF VF_0229 6086bdb1efb8b11abeb7ddcc3a44c50e 118 SUPERFAMILY SSF75169 1 118 3.01E-36 T 10-10-2018 IPR027396 DsrEFH-like VF_0229 6086bdb1efb8b11abeb7ddcc3a44c50e 118 Pfam PF02635 DsrE/DsrF-like family 4 118 2.6E-28 T 10-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 Gene3D G3DSA:3.30.70.1430 560 662 2.2E-276 T 10-10-2018 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 Gene3D G3DSA:3.30.2090.10 714 802 2.2E-276 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 Gene3D G3DSA:1.20.1640.10 510 1030 2.2E-276 T 10-10-2018 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 Gene3D G3DSA:3.30.70.1440 663 860 2.2E-276 T 10-10-2018 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 SUPERFAMILY SSF82693 46 127 4.71E-20 T 10-10-2018 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 SUPERFAMILY SSF82714 716 800 1.01E-17 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1035 0.0 T 10-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 Gene3D G3DSA:3.30.70.1430 42 810 2.2E-276 T 10-10-2018 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 8.7E-32 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 8.7E-32 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 8.7E-32 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 PRINTS PR00702 Acriflavin resistance protein family signature 545 562 8.7E-32 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 8.7E-32 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 8.7E-32 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 8.7E-32 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 Pfam PF00873 AcrB/AcrD/AcrF family 5 1032 7.2E-247 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 Gene3D G3DSA:3.30.70.1320 135 330 2.2E-276 T 10-10-2018 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 SUPERFAMILY SSF82693 137 328 3.92E-23 T 10-10-2018 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 SUPERFAMILY SSF82866 294 499 1.24E-43 T 10-10-2018 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 Gene3D G3DSA:1.20.1640.10 12 509 2.2E-276 T 10-10-2018 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 SUPERFAMILY SSF82866 798 1035 2.75E-50 T 10-10-2018 VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 SUPERFAMILY SSF82714 185 269 3.92E-17 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0445 da0a62e6d891223977b0adeb20d9b6e6 1039 Gene3D G3DSA:3.30.2090.10 181 272 2.2E-276 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A1107 105979205e97677816c44d777cb17854 534 Gene3D G3DSA:2.30.30.60 381 429 2.5E-15 T 10-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VF_A1107 105979205e97677816c44d777cb17854 534 Pfam PF00924 Mechanosensitive ion channel 329 520 8.1E-54 T 10-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VF_A1107 105979205e97677816c44d777cb17854 534 SUPERFAMILY SSF50182 365 431 6.21E-17 T 10-10-2018 IPR010920 LSM domain superfamily VF_A1107 105979205e97677816c44d777cb17854 534 SUPERFAMILY SSF82689 435 531 1.06E-33 T 10-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 VF_A1107 105979205e97677816c44d777cb17854 534 Gene3D G3DSA:3.30.70.100 432 524 8.3E-29 T 10-10-2018 VF_A1107 105979205e97677816c44d777cb17854 534 SUPERFAMILY SSF82861 279 364 9.94E-15 T 10-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 VF_0684 8f6fe296b8f3e3b638010ed2608b779f 269 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 14 269 1.8E-122 T 10-10-2018 IPR004872 Lipoprotein NlpA family VF_0684 8f6fe296b8f3e3b638010ed2608b779f 269 Gene3D G3DSA:3.40.190.10 34 263 4.8E-94 T 10-10-2018 VF_0684 8f6fe296b8f3e3b638010ed2608b779f 269 Gene3D G3DSA:3.40.190.10 115 219 4.8E-94 T 10-10-2018 VF_0684 8f6fe296b8f3e3b638010ed2608b779f 269 PIRSF PIRSF002854 1 269 8.5E-100 T 10-10-2018 IPR004872 Lipoprotein NlpA family VF_0684 8f6fe296b8f3e3b638010ed2608b779f 269 Pfam PF03180 NLPA lipoprotein 33 269 1.5E-97 T 10-10-2018 IPR004872 Lipoprotein NlpA family VF_0684 8f6fe296b8f3e3b638010ed2608b779f 269 SUPERFAMILY SSF53850 32 269 2.38E-80 T 10-10-2018 VF_1445 f512fc37307b4234c0469039dc35e858 504 SUPERFAMILY SSF52540 268 474 1.38E-48 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1445 f512fc37307b4234c0469039dc35e858 504 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1445 f512fc37307b4234c0469039dc35e858 504 Pfam PF00005 ABC transporter 22 170 1.6E-30 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1445 f512fc37307b4234c0469039dc35e858 504 SMART SM00382 30 249 3.0E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1445 f512fc37307b4234c0469039dc35e858 504 SMART SM00382 278 472 5.6E-7 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1445 f512fc37307b4234c0469039dc35e858 504 Gene3D G3DSA:3.40.50.300 1 240 5.8E-57 T 10-10-2018 VF_1445 f512fc37307b4234c0469039dc35e858 504 Pfam PF00005 ABC transporter 270 423 2.6E-25 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1445 f512fc37307b4234c0469039dc35e858 504 Gene3D G3DSA:3.40.50.300 262 501 2.2E-46 T 10-10-2018 VF_1445 f512fc37307b4234c0469039dc35e858 504 SUPERFAMILY SSF52540 5 225 2.2E-56 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1445 f512fc37307b4234c0469039dc35e858 504 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0285 658e844c625ede42af4c29f9c9a28245 472 Gene3D G3DSA:1.10.530.10 296 469 5.3E-37 T 10-10-2018 VF_A0285 658e844c625ede42af4c29f9c9a28245 472 SUPERFAMILY SSF53850 42 279 4.35E-39 T 10-10-2018 VF_A0285 658e844c625ede42af4c29f9c9a28245 472 SMART SM00062 43 280 4.5E-16 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_A0285 658e844c625ede42af4c29f9c9a28245 472 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 53 277 7.1E-25 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_A0285 658e844c625ede42af4c29f9c9a28245 472 Gene3D G3DSA:3.40.190.10 132 236 9.5E-51 T 10-10-2018 VF_A0285 658e844c625ede42af4c29f9c9a28245 472 Pfam PF01464 Transglycosylase SLT domain 301 411 3.3E-18 T 10-10-2018 IPR008258 Transglycosylase SLT domain 1 VF_A0285 658e844c625ede42af4c29f9c9a28245 472 SUPERFAMILY SSF53955 300 456 2.85E-36 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_A0285 658e844c625ede42af4c29f9c9a28245 472 Gene3D G3DSA:3.40.190.10 39 270 9.5E-51 T 10-10-2018 VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 SUPERFAMILY SSF50249 635 719 2.54E-24 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 Pfam PF09371 Tex-like protein N-terminal domain 6 189 3.6E-67 T 10-10-2018 IPR018974 Tex-like protein, N-terminal VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 Pfam PF00575 S1 RNA binding domain 646 717 1.5E-21 T 10-10-2018 IPR003029 S1 domain GO:0003676 VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 Pfam PF12836 Helix-hairpin-helix motif 488 552 1.5E-27 T 10-10-2018 VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 Pfam PF16921 Tex protein YqgF-like domain 323 448 2.7E-54 T 10-10-2018 IPR032639 Tex protein, YqgF-like domain VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 SUPERFAMILY SSF158832 2 318 8.37E-118 T 10-10-2018 VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 SUPERFAMILY SSF47781 557 629 2.89E-19 T 10-10-2018 IPR010994 RuvA domain 2-like VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 Gene3D G3DSA:2.40.50.140 628 723 1.8E-28 T 10-10-2018 VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 Gene3D G3DSA:1.10.10.650 1 106 8.5E-40 T 10-10-2018 IPR023319 Tex-like protein, HTH domain superfamily VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 Gene3D G3DSA:3.30.420.140 322 448 2.6E-154 T 10-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 SMART SM00316 646 717 4.4E-25 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 Gene3D G3DSA:1.10.150.310 496 627 1.4E-49 T 10-10-2018 VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 Gene3D G3DSA:1.10.3500.10 109 495 2.6E-154 T 10-10-2018 IPR023323 Tex-like domain superfamily VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 SMART SM00732 323 421 1.6E-35 T 10-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 SUPERFAMILY SSF47781 467 553 5.78E-27 T 10-10-2018 IPR010994 RuvA domain 2-like VF_0120 0bc150fc1e974e80f9a5f7f47ea09a61 771 SUPERFAMILY SSF53098 319 466 2.2E-49 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_1055 71b2cbad217e10e34ac5f605e18feaff 331 Gene3D G3DSA:3.40.50.720 2 317 7.4E-134 T 10-10-2018 VF_1055 71b2cbad217e10e34ac5f605e18feaff 331 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 6.8E-51 T 10-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VF_1055 71b2cbad217e10e34ac5f605e18feaff 331 Gene3D G3DSA:3.40.50.720 102 297 7.4E-134 T 10-10-2018 VF_1055 71b2cbad217e10e34ac5f605e18feaff 331 SUPERFAMILY SSF51735 102 298 3.18E-53 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1055 71b2cbad217e10e34ac5f605e18feaff 331 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 12 326 1.2E-32 T 10-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 VF_1055 71b2cbad217e10e34ac5f605e18feaff 331 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 10-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VF_1055 71b2cbad217e10e34ac5f605e18feaff 331 SUPERFAMILY SSF52283 2 135 1.08E-41 T 10-10-2018 VF_1055 71b2cbad217e10e34ac5f605e18feaff 331 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 10-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 VF_1055 71b2cbad217e10e34ac5f605e18feaff 331 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 10-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VF_A0199 c3ed3be36ef555d0caa88fab4bc88630 310 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 265 4.2E-8 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_A0199 c3ed3be36ef555d0caa88fab4bc88630 310 Gene3D G3DSA:3.40.50.300 3 305 5.8E-79 T 10-10-2018 VF_A0199 c3ed3be36ef555d0caa88fab4bc88630 310 Pfam PF00005 ABC transporter 30 184 8.1E-35 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0199 c3ed3be36ef555d0caa88fab4bc88630 310 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0199 c3ed3be36ef555d0caa88fab4bc88630 310 SMART SM00382 39 233 2.7E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0199 c3ed3be36ef555d0caa88fab4bc88630 310 SUPERFAMILY SSF52540 5 254 6.88E-67 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1272 68bc291e50e5b2768650db3bddaaf166 188 SMART SM01185 69 124 1.9E-17 T 10-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 VF_1272 68bc291e50e5b2768650db3bddaaf166 188 Gene3D G3DSA:2.40.50.140 67 130 1.2E-16 T 10-10-2018 VF_1272 68bc291e50e5b2768650db3bddaaf166 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 62 2.2E-18 T 10-10-2018 IPR013185 Translation elongation factor, KOW-like VF_1272 68bc291e50e5b2768650db3bddaaf166 188 Gene3D G3DSA:2.30.30.30 1 63 5.4E-13 T 10-10-2018 IPR014722 Ribosomal protein L2, domain 2 VF_1272 68bc291e50e5b2768650db3bddaaf166 188 SUPERFAMILY SSF50104 1 64 3.01E-12 T 10-10-2018 IPR008991 Translation protein SH3-like domain superfamily VF_1272 68bc291e50e5b2768650db3bddaaf166 188 Pfam PF09285 Elongation factor P, C-terminal 132 187 4.4E-21 T 10-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 VF_1272 68bc291e50e5b2768650db3bddaaf166 188 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 2 188 43.849 T 10-10-2018 IPR011897 Translation elongation factor P-like, YeiP VF_1272 68bc291e50e5b2768650db3bddaaf166 188 ProSitePatterns PS01275 Elongation factor P signature. 153 172 - T 10-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site VF_1272 68bc291e50e5b2768650db3bddaaf166 188 SUPERFAMILY SSF50249 132 188 1.71E-15 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1272 68bc291e50e5b2768650db3bddaaf166 188 Gene3D G3DSA:2.40.50.140 131 188 9.2E-23 T 10-10-2018 VF_1272 68bc291e50e5b2768650db3bddaaf166 188 SMART SM00841 132 187 1.2E-27 T 10-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 VF_1272 68bc291e50e5b2768650db3bddaaf166 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 124 8.6E-15 T 10-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 VF_1272 68bc291e50e5b2768650db3bddaaf166 188 TIGRFAM TIGR02178 yeiP: elongation factor P-like protein YeiP 3 188 1.1E-85 T 10-10-2018 IPR011897 Translation elongation factor P-like, YeiP VF_1272 68bc291e50e5b2768650db3bddaaf166 188 SUPERFAMILY SSF50249 68 129 1.89E-12 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1272 68bc291e50e5b2768650db3bddaaf166 188 PIRSF PIRSF005901 1 188 3.1E-66 T 10-10-2018 IPR020599 Translation elongation factor P/YeiP VF_1009 652aec7ac69df48d24dc078d04e69c74 694 Pfam PF13307 Helicase C-terminal domain 530 688 5.7E-36 T 10-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 VF_1009 652aec7ac69df48d24dc078d04e69c74 694 Gene3D G3DSA:3.40.50.300 519 691 5.4E-33 T 10-10-2018 VF_1009 652aec7ac69df48d24dc078d04e69c74 694 SMART SM00487 22 305 0.0066 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_1009 652aec7ac69df48d24dc078d04e69c74 694 Gene3D G3DSA:3.40.50.300 26 310 1.2E-41 T 10-10-2018 VF_1009 652aec7ac69df48d24dc078d04e69c74 694 Pfam PF06733 DEAD_2 200 265 2.1E-6 T 10-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 VF_1009 652aec7ac69df48d24dc078d04e69c74 694 SMART SM00491 539 675 1.1E-27 T 10-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 VF_1009 652aec7ac69df48d24dc078d04e69c74 694 SUPERFAMILY SSF52540 14 669 1.89E-17 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1009 652aec7ac69df48d24dc078d04e69c74 694 Hamap MF_02205 ATP-dependent DNA helicase DinG [dinG]. 33 694 36.999 T 10-10-2018 IPR039000 ATP-dependent DNA helicase DinG GO:0004003 VF_1009 652aec7ac69df48d24dc078d04e69c74 694 SUPERFAMILY SSF52540 201 669 4.18E-11 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0970 222368064d2f9358ac29cac1009b9a58 236 SUPERFAMILY SSF51735 2 236 8.1E-47 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0970 222368064d2f9358ac29cac1009b9a58 236 Gene3D G3DSA:3.40.50.720 1 236 7.4E-43 T 10-10-2018 VF_0970 222368064d2f9358ac29cac1009b9a58 236 Pfam PF00106 short chain dehydrogenase 4 193 1.0E-18 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0970 222368064d2f9358ac29cac1009b9a58 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 67 78 1.3E-11 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0970 222368064d2f9358ac29cac1009b9a58 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.3E-11 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0970 222368064d2f9358ac29cac1009b9a58 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 1.3E-11 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0970 222368064d2f9358ac29cac1009b9a58 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 1.3E-11 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0970 222368064d2f9358ac29cac1009b9a58 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 217 1.3E-11 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0691 d745886af34d1ac38e27e052d7558023 334 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0691 d745886af34d1ac38e27e052d7558023 334 Gene3D G3DSA:3.40.50.300 4 333 1.7E-107 T 10-10-2018 VF_0691 d745886af34d1ac38e27e052d7558023 334 SUPERFAMILY SSF52540 35 324 1.25E-71 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0691 d745886af34d1ac38e27e052d7558023 334 Pfam PF00005 ABC transporter 26 186 4.7E-28 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0691 d745886af34d1ac38e27e052d7558023 334 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 323 6.6E-26 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_0691 d745886af34d1ac38e27e052d7558023 334 SMART SM00382 35 236 4.0E-18 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0691 d745886af34d1ac38e27e052d7558023 334 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 239 303 5.3E-19 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_A0891 e3250e0fb2cf93e15f839200902ed429 402 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 205 364 3.8E-36 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0891 e3250e0fb2cf93e15f839200902ed429 402 Gene3D G3DSA:1.10.287.950 64 402 1.0E-58 T 10-10-2018 VF_A0891 e3250e0fb2cf93e15f839200902ed429 402 SMART SM00283 139 401 3.2E-49 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0891 e3250e0fb2cf93e15f839200902ed429 402 SUPERFAMILY SSF58104 101 401 1.05E-59 T 10-10-2018 VF_0675 0e065c5b324e1c78450a12cebed1e4bb 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 9.0E-48 T 10-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0675 0e065c5b324e1c78450a12cebed1e4bb 100 Pfam PF00547 Urease, gamma subunit 1 99 1.5E-46 T 10-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0675 0e065c5b324e1c78450a12cebed1e4bb 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 34.584 T 10-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0675 0e065c5b324e1c78450a12cebed1e4bb 100 SUPERFAMILY SSF54111 1 99 1.96E-45 T 10-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0675 0e065c5b324e1c78450a12cebed1e4bb 100 Gene3D G3DSA:3.30.280.10 1 100 2.1E-47 T 10-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0675 0e065c5b324e1c78450a12cebed1e4bb 100 PIRSF PIRSF001223 1 100 8.1E-50 T 10-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0675 0e065c5b324e1c78450a12cebed1e4bb 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 99 3.7E-50 T 10-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_1019 6c2278f8a6bd1fc6bcec5b380b31e62f 206 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 118 201 3.5E-32 T 10-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 VF_1019 6c2278f8a6bd1fc6bcec5b380b31e62f 206 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 105 2.8E-31 T 10-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 VF_1019 6c2278f8a6bd1fc6bcec5b380b31e62f 206 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 115 201 19.599 T 10-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 VF_1019 6c2278f8a6bd1fc6bcec5b380b31e62f 206 Gene3D G3DSA:3.10.20.400 2 97 2.4E-35 T 10-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 VF_1019 6c2278f8a6bd1fc6bcec5b380b31e62f 206 Gene3D G3DSA:1.10.287.1080 116 206 3.3E-30 T 10-10-2018 VF_1019 6c2278f8a6bd1fc6bcec5b380b31e62f 206 SUPERFAMILY SSF141734 7 119 1.57E-45 T 10-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 VF_1019 6c2278f8a6bd1fc6bcec5b380b31e62f 206 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 105 1.0E-23 T 10-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 VF_1019 6c2278f8a6bd1fc6bcec5b380b31e62f 206 SUPERFAMILY SSF101386 118 205 1.02E-25 T 10-10-2018 VF_1019 6c2278f8a6bd1fc6bcec5b380b31e62f 206 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 8 206 37.386 T 10-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 VF_1019 6c2278f8a6bd1fc6bcec5b380b31e62f 206 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 118 205 1.9E-18 T 10-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 VF_0695 7bbc1d9a929ba41535a7ac5694899fd2 416 Gene3D G3DSA:3.40.640.10 37 288 1.7E-185 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_0695 7bbc1d9a929ba41535a7ac5694899fd2 416 Gene3D G3DSA:3.90.1150.10 10 393 1.7E-185 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_0695 7bbc1d9a929ba41535a7ac5694899fd2 416 SUPERFAMILY SSF53383 6 415 7.48E-184 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_0695 7bbc1d9a929ba41535a7ac5694899fd2 416 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 416 52.231 T 10-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VF_0695 7bbc1d9a929ba41535a7ac5694899fd2 416 Pfam PF00464 Serine hydroxymethyltransferase 9 385 3.6E-181 T 10-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VF_0695 7bbc1d9a929ba41535a7ac5694899fd2 416 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 10-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VF_0695 7bbc1d9a929ba41535a7ac5694899fd2 416 PIRSF PIRSF000412 1 415 9.1E-169 T 10-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VF_2408 f7f28073daa3f360681c05fa763b86ab 214 SMART SM00421 147 204 6.0E-24 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_2408 f7f28073daa3f360681c05fa763b86ab 214 Gene3D G3DSA:1.10.10.10 141 210 3.4E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2408 f7f28073daa3f360681c05fa763b86ab 214 Gene3D G3DSA:3.40.50.2300 4 140 5.3E-29 T 10-10-2018 VF_2408 f7f28073daa3f360681c05fa763b86ab 214 SUPERFAMILY SSF46894 131 208 1.36E-21 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_2408 f7f28073daa3f360681c05fa763b86ab 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_2408 f7f28073daa3f360681c05fa763b86ab 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 8.4E-15 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_2408 f7f28073daa3f360681c05fa763b86ab 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 8.4E-15 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_2408 f7f28073daa3f360681c05fa763b86ab 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 8.4E-15 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_2408 f7f28073daa3f360681c05fa763b86ab 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 204 1.6E-21 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_2263 1028b8b1d91bfdf0e852fa3b329a583d 573 SUPERFAMILY SSF52467 190 363 6.16E-62 T 10-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VF_2263 1028b8b1d91bfdf0e852fa3b329a583d 573 SUPERFAMILY SSF52518 371 566 7.33E-69 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_2263 1028b8b1d91bfdf0e852fa3b329a583d 573 SUPERFAMILY SSF52518 1 180 2.7E-65 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_2263 1028b8b1d91bfdf0e852fa3b329a583d 573 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 330 3.7E-45 T 10-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 VF_2263 1028b8b1d91bfdf0e852fa3b329a583d 573 Gene3D G3DSA:3.40.50.1220 191 361 3.8E-58 T 10-10-2018 VF_2263 1028b8b1d91bfdf0e852fa3b329a583d 573 Gene3D G3DSA:3.40.50.970 1 183 1.1E-73 T 10-10-2018 VF_2263 1028b8b1d91bfdf0e852fa3b329a583d 573 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 171 2.2E-59 T 10-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 VF_2263 1028b8b1d91bfdf0e852fa3b329a583d 573 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 395 544 2.7E-49 T 10-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 VF_2263 1028b8b1d91bfdf0e852fa3b329a583d 573 Gene3D G3DSA:3.40.50.970 365 573 4.6E-66 T 10-10-2018 VF_2263 1028b8b1d91bfdf0e852fa3b329a583d 573 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 568 1.4E-272 T 10-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 VF_2263 1028b8b1d91bfdf0e852fa3b329a583d 573 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 432 451 - T 10-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 VF_A0353 60f4018df9f3798f160ca10b7120311d 350 Gene3D G3DSA:3.30.428.10 46 177 5.2E-54 T 10-10-2018 IPR036265 HIT-like superfamily VF_A0353 60f4018df9f3798f160ca10b7120311d 350 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 6 178 5.1E-68 T 10-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VF_A0353 60f4018df9f3798f160ca10b7120311d 350 SUPERFAMILY SSF54197 6 179 6.58E-71 T 10-10-2018 IPR036265 HIT-like superfamily VF_A0353 60f4018df9f3798f160ca10b7120311d 350 SUPERFAMILY SSF54197 181 348 2.72E-55 T 10-10-2018 IPR036265 HIT-like superfamily VF_A0353 60f4018df9f3798f160ca10b7120311d 350 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 153 170 - T 10-10-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VF_A0353 60f4018df9f3798f160ca10b7120311d 350 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 4 349 4.2E-185 T 10-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VF_A0353 60f4018df9f3798f160ca10b7120311d 350 Gene3D G3DSA:3.30.428.10 178 350 1.5E-72 T 10-10-2018 IPR036265 HIT-like superfamily VF_A0353 60f4018df9f3798f160ca10b7120311d 350 PIRSF PIRSF000808 2 345 2.1E-123 T 10-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VF_A0353 60f4018df9f3798f160ca10b7120311d 350 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 186 348 6.9E-65 T 10-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VF_A0824 9866589b173d01d0a1589bedf56aff0e 253 Pfam PF00005 ABC transporter 18 164 3.9E-28 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0824 9866589b173d01d0a1589bedf56aff0e 253 Gene3D G3DSA:3.40.50.300 1 252 5.2E-64 T 10-10-2018 VF_A0824 9866589b173d01d0a1589bedf56aff0e 253 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0824 9866589b173d01d0a1589bedf56aff0e 253 SUPERFAMILY SSF52540 2 226 1.39E-55 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0824 9866589b173d01d0a1589bedf56aff0e 253 SMART SM00382 26 213 5.0E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0209 b4e34db6bb6eff153446d8e33de897fe 335 Gene3D G3DSA:3.30.540.10 7 319 6.6E-124 T 10-10-2018 VF_0209 b4e34db6bb6eff153446d8e33de897fe 335 SUPERFAMILY SSF56655 1 324 1.16E-105 T 10-10-2018 VF_0209 b4e34db6bb6eff153446d8e33de897fe 335 PIRSF PIRSF004532 1 331 5.0E-132 T 10-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 VF_0209 b4e34db6bb6eff153446d8e33de897fe 335 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 321 1.7E-126 T 10-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 VF_0209 b4e34db6bb6eff153446d8e33de897fe 335 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 327 3.0E-165 T 10-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 VF_0209 b4e34db6bb6eff153446d8e33de897fe 335 Gene3D G3DSA:3.40.190.90 109 276 6.6E-124 T 10-10-2018 VF_1056 aad24580e342df571f8473a04cb932f4 569 Gene3D G3DSA:3.40.120.10 323 442 1.1E-30 T 10-10-2018 VF_1056 aad24580e342df571f8473a04cb932f4 569 Gene3D G3DSA:3.40.120.10 203 322 9.1E-22 T 10-10-2018 VF_1056 aad24580e342df571f8473a04cb932f4 569 SUPERFAMILY SSF53738 28 218 1.02E-44 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_1056 aad24580e342df571f8473a04cb932f4 569 SUPERFAMILY SSF53738 203 311 3.22E-21 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_1056 aad24580e342df571f8473a04cb932f4 569 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 495 549 1.1E-10 T 10-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_1056 aad24580e342df571f8473a04cb932f4 569 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 322 436 1.6E-16 T 10-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_1056 aad24580e342df571f8473a04cb932f4 569 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 41 177 1.8E-41 T 10-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_1056 aad24580e342df571f8473a04cb932f4 569 Gene3D G3DSA:3.40.120.10 32 186 2.8E-47 T 10-10-2018 VF_1056 aad24580e342df571f8473a04cb932f4 569 SUPERFAMILY SSF53738 302 445 1.73E-28 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_1056 aad24580e342df571f8473a04cb932f4 569 Gene3D G3DSA:3.30.310.50 443 549 1.0E-6 T 10-10-2018 VF_1056 aad24580e342df571f8473a04cb932f4 569 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 294 309 1.3E-8 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_1056 aad24580e342df571f8473a04cb932f4 569 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 138 152 1.3E-8 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_1056 aad24580e342df571f8473a04cb932f4 569 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 227 246 1.3E-8 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_1056 aad24580e342df571f8473a04cb932f4 569 SUPERFAMILY SSF55957 461 538 2.88E-13 T 10-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_1056 aad24580e342df571f8473a04cb932f4 569 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 205 310 7.9E-24 T 10-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_1056 aad24580e342df571f8473a04cb932f4 569 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 139 148 - T 10-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_2042 3490dd3791e9505a7e00e99fcca63781 542 Gene3D G3DSA:1.10.287.950 211 542 4.6E-75 T 10-10-2018 VF_2042 3490dd3791e9505a7e00e99fcca63781 542 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 507 2.2E-41 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_2042 3490dd3791e9505a7e00e99fcca63781 542 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 183 3.4E-26 T 10-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VF_2042 3490dd3791e9505a7e00e99fcca63781 542 SMART SM00283 280 541 3.5E-64 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_2042 3490dd3791e9505a7e00e99fcca63781 542 SUPERFAMILY SSF58104 240 542 1.18E-70 T 10-10-2018 VF_2042 3490dd3791e9505a7e00e99fcca63781 542 SMART SM00304 211 265 0.0014 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_2042 3490dd3791e9505a7e00e99fcca63781 542 SMART SM00304 272 325 17.0 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_0164 36033e66984774b59edf965c7551b094 146 SUPERFAMILY SSF52788 1 146 7.98E-42 T 10-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily VF_0164 36033e66984774b59edf965c7551b094 146 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 5 143 9.8E-39 T 10-10-2018 IPR023485 Phosphotyrosine protein phosphatase I VF_0164 36033e66984774b59edf965c7551b094 146 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 79 94 9.2E-25 T 10-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 VF_0164 36033e66984774b59edf965c7551b094 146 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 101 114 9.2E-25 T 10-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 VF_0164 36033e66984774b59edf965c7551b094 146 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 117 132 9.2E-25 T 10-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 VF_0164 36033e66984774b59edf965c7551b094 146 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 5 22 9.2E-25 T 10-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 VF_0164 36033e66984774b59edf965c7551b094 146 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 45 61 9.2E-25 T 10-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 VF_0164 36033e66984774b59edf965c7551b094 146 Gene3D G3DSA:3.40.50.2300 1 146 7.8E-51 T 10-10-2018 VF_0164 36033e66984774b59edf965c7551b094 146 SMART SM00226 3 145 6.5E-53 T 10-10-2018 IPR023485 Phosphotyrosine protein phosphatase I VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 Pfam PF00154 recA bacterial DNA recombination protein 7 267 1.5E-142 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 Gene3D G3DSA:3.30.250.10 268 344 1.1E-25 T 10-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 ProSitePatterns PS00321 recA signature. 213 221 - T 10-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 Gene3D G3DSA:3.40.50.300 26 267 2.8E-82 T 10-10-2018 VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 SMART SM00382 57 228 3.8E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 SUPERFAMILY SSF54752 269 325 2.88E-20 T 10-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 324 2.4E-169 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 PRINTS PR00142 RecA protein signature 297 314 1.3E-83 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 PRINTS PR00142 RecA protein signature 243 272 1.3E-83 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 PRINTS PR00142 RecA protein signature 93 122 1.3E-83 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 PRINTS PR00142 RecA protein signature 127 156 1.3E-83 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 PRINTS PR00142 RecA protein signature 165 194 1.3E-83 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 PRINTS PR00142 RecA protein signature 210 238 1.3E-83 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 Hamap MF_00268 Protein RecA [recA]. 5 329 50.551 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VF_0535 7804e1e40f57d6ece01a291177f9c66e 348 SUPERFAMILY SSF52540 3 267 3.54E-66 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1950 4025865dc3a8523df3c919c4270b23d3 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 262 44.35 T 10-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 VF_1950 4025865dc3a8523df3c919c4270b23d3 262 Gene3D G3DSA:2.160.10.10 1 196 3.6E-50 T 10-10-2018 VF_1950 4025865dc3a8523df3c919c4270b23d3 262 PIRSF PIRSF000456 4 262 3.0E-99 T 10-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 VF_1950 4025865dc3a8523df3c919c4270b23d3 262 Gene3D G3DSA:1.20.1180.10 197 262 2.5E-24 T 10-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 VF_1950 4025865dc3a8523df3c919c4270b23d3 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 260 5.9E-100 T 10-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 VF_1950 4025865dc3a8523df3c919c4270b23d3 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 261 3.5E-28 T 10-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 VF_1950 4025865dc3a8523df3c919c4270b23d3 262 SUPERFAMILY SSF51161 1 262 1.27E-77 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_1950 4025865dc3a8523df3c919c4270b23d3 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 3.5E-5 T 10-10-2018 IPR001451 Hexapeptide repeat VF_1950 4025865dc3a8523df3c919c4270b23d3 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 17 52 2.5E-7 T 10-10-2018 IPR001451 Hexapeptide repeat VF_1005 379f8897515ba7f79edda81edfc2ff46 516 TIGRFAM TIGR03362 VI_chp_7: type VI secretion-associated protein, VC_A0119 family 4 483 1.8E-157 T 10-10-2018 IPR017739 Type VI secretion system-associated, VCA0119 VF_1005 379f8897515ba7f79edda81edfc2ff46 516 Pfam PF16989 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ 223 480 4.5E-70 T 10-10-2018 IPR017739 Type VI secretion system-associated, VCA0119 VF_1005 379f8897515ba7f79edda81edfc2ff46 516 Pfam PF06812 ImpA, N-terminal, type VI secretion system 9 108 3.9E-16 T 10-10-2018 IPR010657 ImpA, N-terminal VF_1288 4fc3493502da4152bdf2665422ab245b 80 SUPERFAMILY SSF52833 1 74 3.21E-14 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1288 4fc3493502da4152bdf2665422ab245b 80 Pfam PF05768 Glutaredoxin-like domain (DUF836) 2 73 6.1E-21 T 10-10-2018 IPR008554 Glutaredoxin-like VF_1288 4fc3493502da4152bdf2665422ab245b 80 Gene3D G3DSA:3.40.30.10 1 79 2.2E-21 T 10-10-2018 VF_1638 5a02023de62f2843e12f67a369a563ee 315 SUPERFAMILY SSF51395 2 313 2.32E-71 T 10-10-2018 VF_1638 5a02023de62f2843e12f67a369a563ee 315 Gene3D G3DSA:3.20.20.70 1 242 2.3E-79 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1638 5a02023de62f2843e12f67a369a563ee 315 Pfam PF01207 Dihydrouridine synthase (Dus) 5 301 1.5E-79 T 10-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VF_1638 5a02023de62f2843e12f67a369a563ee 315 Gene3D G3DSA:1.20.225.30 243 314 4.9E-24 T 10-10-2018 VF_1638 5a02023de62f2843e12f67a369a563ee 315 PIRSF PIRSF006621 1 315 3.8E-74 T 10-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VF_1638 5a02023de62f2843e12f67a369a563ee 315 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 10-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 VF_1638 5a02023de62f2843e12f67a369a563ee 315 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 310 51.67 T 10-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 VF_0672 754b9f21193a60024521e5ec7062dc57 163 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 150 22.047 T 10-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 VF_0672 754b9f21193a60024521e5ec7062dc57 163 Gene3D G3DSA:3.30.70.790 83 154 1.4E-29 T 10-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 VF_0672 754b9f21193a60024521e5ec7062dc57 163 Pfam PF05194 UreE urease accessory protein, C-terminal domain 83 163 7.8E-25 T 10-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 VF_0672 754b9f21193a60024521e5ec7062dc57 163 SUPERFAMILY SSF69287 1 81 4.84E-15 T 10-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily VF_0672 754b9f21193a60024521e5ec7062dc57 163 SUPERFAMILY SSF69737 83 149 1.29E-20 T 10-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 VF_0672 754b9f21193a60024521e5ec7062dc57 163 PIRSF PIRSF036402 2 163 1.1E-40 T 10-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 VF_0672 754b9f21193a60024521e5ec7062dc57 163 Gene3D G3DSA:2.60.260.20 1 82 4.2E-18 T 10-10-2018 VF_0672 754b9f21193a60024521e5ec7062dc57 163 Pfam PF02814 UreE urease accessory protein, N-terminal domain 15 74 3.7E-17 T 10-10-2018 IPR004029 UreE urease accessory, N-terminal VF_0672 754b9f21193a60024521e5ec7062dc57 163 SMART SM00988 12 76 1.2E-16 T 10-10-2018 IPR004029 UreE urease accessory, N-terminal VF_2143 e94f16689ad085314b7fe368544ff93c 331 Pfam PF00005 ABC transporter 35 192 5.7E-30 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_2143 e94f16689ad085314b7fe368544ff93c 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 328 3.5E-22 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_2143 e94f16689ad085314b7fe368544ff93c 331 Gene3D G3DSA:3.40.50.300 7 331 4.2E-77 T 10-10-2018 VF_2143 e94f16689ad085314b7fe368544ff93c 331 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_2143 e94f16689ad085314b7fe368544ff93c 331 SMART SM00382 43 241 7.5E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2143 e94f16689ad085314b7fe368544ff93c 331 SUPERFAMILY SSF52540 9 262 9.05E-60 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2143 e94f16689ad085314b7fe368544ff93c 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 308 2.9E-16 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_A0851 791ba452aabc2d7a2f111d2e1a63a389 289 SUPERFAMILY SSF55136 139 286 1.27E-23 T 10-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VF_A0851 791ba452aabc2d7a2f111d2e1a63a389 289 Gene3D G3DSA:3.20.80.10 138 287 1.2E-25 T 10-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VF_A0851 791ba452aabc2d7a2f111d2e1a63a389 289 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 60 103 - T 10-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VF_A0851 791ba452aabc2d7a2f111d2e1a63a389 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 91 107 2.3E-7 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_A0851 791ba452aabc2d7a2f111d2e1a63a389 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 76 91 2.3E-7 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_A0851 791ba452aabc2d7a2f111d2e1a63a389 289 Gene3D G3DSA:1.10.10.60 57 111 3.4E-18 T 10-10-2018 VF_A0851 791ba452aabc2d7a2f111d2e1a63a389 289 SUPERFAMILY SSF46689 60 109 7.17E-13 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0851 791ba452aabc2d7a2f111d2e1a63a389 289 Pfam PF12833 Helix-turn-helix domain 29 108 5.4E-26 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0851 791ba452aabc2d7a2f111d2e1a63a389 289 SMART SM00871 137 287 6.9E-16 T 10-10-2018 IPR010499 Bacterial transcription activator, effector binding VF_A0851 791ba452aabc2d7a2f111d2e1a63a389 289 Pfam PF06445 GyrI-like small molecule binding domain 138 286 1.3E-25 T 10-10-2018 IPR029442 GyrI-like small molecule binding domain VF_A0851 791ba452aabc2d7a2f111d2e1a63a389 289 SUPERFAMILY SSF46689 6 57 4.93E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0851 791ba452aabc2d7a2f111d2e1a63a389 289 Gene3D G3DSA:1.10.10.60 1 56 4.0E-16 T 10-10-2018 VF_A0851 791ba452aabc2d7a2f111d2e1a63a389 289 SMART SM00342 23 107 3.3E-32 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_0112 4e510959fc524faf8a09f09ac2c847ff 215 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 215 35.999 T 10-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_0112 4e510959fc524faf8a09f09ac2c847ff 215 Pfam PF00156 Phosphoribosyl transferase domain 45 163 9.5E-12 T 10-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VF_0112 4e510959fc524faf8a09f09ac2c847ff 215 SUPERFAMILY SSF53271 4 210 3.27E-49 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like VF_0112 4e510959fc524faf8a09f09ac2c847ff 215 Gene3D G3DSA:3.40.50.2020 3 215 2.3E-78 T 10-10-2018 VF_0112 4e510959fc524faf8a09f09ac2c847ff 215 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 12 189 1.5E-69 T 10-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_1291 0cdd24ce780d5766446fdda4a11d5450 57 Pfam PF04957 Ribosome modulation factor 1 54 7.5E-28 T 10-10-2018 IPR007040 Ribosome modulation factor VF_1291 0cdd24ce780d5766446fdda4a11d5450 57 Hamap MF_00919 Ribosome modulation factor [rmf]. 1 55 29.452 T 10-10-2018 IPR007040 Ribosome modulation factor VF_1291 0cdd24ce780d5766446fdda4a11d5450 57 Gene3D G3DSA:1.10.10.620 1 57 2.2E-28 T 10-10-2018 IPR023200 Ribosome modulation factor domain superfamily VF_1291 0cdd24ce780d5766446fdda4a11d5450 57 ProDom PD051650 RIBOSOME MODULATION FACTOR E FACTOR-RELATED DIMERIZATION BIOGENESIS RIBOSOMES INVOLVED 70S 1 51 2.0E-23 T 10-10-2018 IPR007040 Ribosome modulation factor VF_0153 85446e197cb994878c360baf693e399b 490 SMART SM00849 28 266 4.7E-11 T 10-10-2018 IPR001279 Metallo-beta-lactamase VF_0153 85446e197cb994878c360baf693e399b 490 SUPERFAMILY SSF56281 15 485 2.19E-114 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VF_0153 85446e197cb994878c360baf693e399b 490 Pfam PF10996 Beta-Casp domain 286 416 3.5E-28 T 10-10-2018 IPR022712 Beta-Casp domain VF_0153 85446e197cb994878c360baf693e399b 490 Pfam PF00753 Metallo-beta-lactamase superfamily 40 125 2.7E-11 T 10-10-2018 IPR001279 Metallo-beta-lactamase VF_0153 85446e197cb994878c360baf693e399b 490 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 430 482 3.6E-12 T 10-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain VF_0153 85446e197cb994878c360baf693e399b 490 SMART SM01027 286 416 4.8E-56 T 10-10-2018 IPR022712 Beta-Casp domain VF_A0250 0c2d02526129eb9927c379dd21cd10c0 550 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 38 50 8.0E-18 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VF_A0250 0c2d02526129eb9927c379dd21cd10c0 550 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 9 21 8.0E-18 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VF_A0250 0c2d02526129eb9927c379dd21cd10c0 550 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 22 32 8.0E-18 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VF_A0250 0c2d02526129eb9927c379dd21cd10c0 550 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 347 359 8.0E-18 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VF_A0250 0c2d02526129eb9927c379dd21cd10c0 550 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 311 317 8.0E-18 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VF_A0250 0c2d02526129eb9927c379dd21cd10c0 550 Gene3D G3DSA:1.10.10.1100 418 490 7.3E-19 T 10-10-2018 VF_A0250 0c2d02526129eb9927c379dd21cd10c0 550 SUPERFAMILY SSF51905 10 319 2.41E-37 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0250 0c2d02526129eb9927c379dd21cd10c0 550 TIGRFAM TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit 11 538 1.1E-265 T 10-10-2018 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit GO:0004368|GO:0005886|GO:0010181|GO:0046174|GO:0050660|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 VF_A0250 0c2d02526129eb9927c379dd21cd10c0 550 Pfam PF04324 BFD-like [2Fe-2S] binding domain 431 483 7.3E-10 T 10-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain VF_A0250 0c2d02526129eb9927c379dd21cd10c0 550 Pfam PF01266 FAD dependent oxidoreductase 11 358 6.0E-49 T 10-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VF_A0250 0c2d02526129eb9927c379dd21cd10c0 550 Gene3D G3DSA:3.50.50.60 11 366 2.1E-73 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0250 0c2d02526129eb9927c379dd21cd10c0 550 Gene3D G3DSA:3.30.9.10 86 318 2.1E-73 T 10-10-2018 VF_1328 86429bbcd16c294e28f84161e8a2ce3c 178 Pfam PF13302 Acetyltransferase (GNAT) domain 58 159 8.0E-19 T 10-10-2018 IPR000182 GNAT domain VF_1328 86429bbcd16c294e28f84161e8a2ce3c 178 SUPERFAMILY SSF55729 44 160 8.77E-26 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_1328 86429bbcd16c294e28f84161e8a2ce3c 178 Gene3D G3DSA:3.40.630.30 9 172 1.8E-27 T 10-10-2018 VF_1882 4303b7584bc98dfe4d02247c34bb98dd 142 Pfam PF05130 FlgN protein 1 131 1.1E-22 T 10-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 VF_1882 4303b7584bc98dfe4d02247c34bb98dd 142 Gene3D G3DSA:1.20.58.300 1 114 2.7E-6 T 10-10-2018 VF_1882 4303b7584bc98dfe4d02247c34bb98dd 142 SUPERFAMILY SSF140566 1 114 2.88E-20 T 10-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 VF_1349 83e4b025e804c3c8e988ff947d30f610 580 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 200 210 - T 10-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site VF_1349 83e4b025e804c3c8e988ff947d30f610 580 Gene3D G3DSA:3.30.70.80 37 121 7.1E-7 T 10-10-2018 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 VF_1349 83e4b025e804c3c8e988ff947d30f610 580 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 504 514 - T 10-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site VF_1349 83e4b025e804c3c8e988ff947d30f610 580 Gene3D G3DSA:3.50.30.30 349 496 2.1E-140 T 10-10-2018 VF_1349 83e4b025e804c3c8e988ff947d30f610 580 Pfam PF05922 Peptidase inhibitor I9 44 118 1.6E-5 T 10-10-2018 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 VF_1349 83e4b025e804c3c8e988ff947d30f610 580 Pfam PF00082 Subtilase family 155 346 2.6E-25 T 10-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 VF_1349 83e4b025e804c3c8e988ff947d30f610 580 Gene3D G3DSA:3.40.50.200 153 561 2.1E-140 T 10-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 VF_1349 83e4b025e804c3c8e988ff947d30f610 580 SUPERFAMILY SSF54897 42 118 3.4E-7 T 10-10-2018 VF_1349 83e4b025e804c3c8e988ff947d30f610 580 PRINTS PR00723 Subtilisin serine protease family (S8) signature 503 519 1.5E-16 T 10-10-2018 IPR015500 Peptidase S8, subtilisin-related VF_1349 83e4b025e804c3c8e988ff947d30f610 580 PRINTS PR00723 Subtilisin serine protease family (S8) signature 151 170 1.5E-16 T 10-10-2018 IPR015500 Peptidase S8, subtilisin-related VF_1349 83e4b025e804c3c8e988ff947d30f610 580 PRINTS PR00723 Subtilisin serine protease family (S8) signature 196 209 1.5E-16 T 10-10-2018 IPR015500 Peptidase S8, subtilisin-related VF_1349 83e4b025e804c3c8e988ff947d30f610 580 Pfam PF00082 Subtilase family 494 554 6.0E-12 T 10-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 VF_1349 83e4b025e804c3c8e988ff947d30f610 580 SUPERFAMILY SSF52743 132 565 2.13E-99 T 10-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 VF_1448 d0ac3c35f96882893edc773492507343 305 SUPERFAMILY SSF53613 1 302 1.11E-88 T 10-10-2018 IPR029056 Ribokinase-like VF_1448 d0ac3c35f96882893edc773492507343 305 Gene3D G3DSA:3.40.1190.20 1 301 5.9E-108 T 10-10-2018 IPR029056 Ribokinase-like VF_1448 d0ac3c35f96882893edc773492507343 305 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 5 299 1.0E-114 T 10-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 VF_1448 d0ac3c35f96882893edc773492507343 305 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 246 259 - T 10-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VF_1448 d0ac3c35f96882893edc773492507343 305 PRINTS PR00990 Ribokinase signature 173 188 9.9E-37 T 10-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VF_1448 d0ac3c35f96882893edc773492507343 305 PRINTS PR00990 Ribokinase signature 33 52 9.9E-37 T 10-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VF_1448 d0ac3c35f96882893edc773492507343 305 PRINTS PR00990 Ribokinase signature 6 27 9.9E-37 T 10-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VF_1448 d0ac3c35f96882893edc773492507343 305 PRINTS PR00990 Ribokinase signature 217 228 9.9E-37 T 10-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VF_1448 d0ac3c35f96882893edc773492507343 305 PRINTS PR00990 Ribokinase signature 105 118 9.9E-37 T 10-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VF_1448 d0ac3c35f96882893edc773492507343 305 Hamap MF_01987 Ribokinase [rbsK]. 2 301 27.196 T 10-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 VF_1448 d0ac3c35f96882893edc773492507343 305 Pfam PF00294 pfkB family carbohydrate kinase 1 294 9.0E-79 T 10-10-2018 IPR011611 Carbohydrate kinase PfkB VF_0218 0c86d92ee2171ad3dc403f4040156fe9 643 Gene3D G3DSA:3.40.50.300 7 273 8.9E-59 T 10-10-2018 VF_0218 0c86d92ee2171ad3dc403f4040156fe9 643 SMART SM00382 26 223 2.7E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0218 0c86d92ee2171ad3dc403f4040156fe9 643 SMART SM00382 337 503 1.2E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0218 0c86d92ee2171ad3dc403f4040156fe9 643 Pfam PF00005 ABC transporter 328 459 4.5E-25 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0218 0c86d92ee2171ad3dc403f4040156fe9 643 Pfam PF00005 ABC transporter 17 178 1.0E-22 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0218 0c86d92ee2171ad3dc403f4040156fe9 643 Gene3D G3DSA:3.40.50.300 275 540 2.6E-57 T 10-10-2018 VF_0218 0c86d92ee2171ad3dc403f4040156fe9 643 SUPERFAMILY SSF52540 277 494 2.34E-43 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0218 0c86d92ee2171ad3dc403f4040156fe9 643 Pfam PF12848 ABC transporter 217 293 2.2E-28 T 10-10-2018 IPR032781 ABC-transporter extension domain VF_0218 0c86d92ee2171ad3dc403f4040156fe9 643 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0218 0c86d92ee2171ad3dc403f4040156fe9 643 SUPERFAMILY SSF52540 2 257 3.28E-44 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0218 0c86d92ee2171ad3dc403f4040156fe9 643 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0552 e58c541cdf36ba4db8bfcd458d83135f 117 PIRSF PIRSF002191 1 117 1.3E-51 T 10-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0552 e58c541cdf36ba4db8bfcd458d83135f 117 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 1.6E-52 T 10-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0552 e58c541cdf36ba4db8bfcd458d83135f 117 SUPERFAMILY SSF50104 2 115 4.11E-47 T 10-10-2018 IPR008991 Translation protein SH3-like domain superfamily VF_0552 e58c541cdf36ba4db8bfcd458d83135f 117 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 31.641 T 10-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0552 e58c541cdf36ba4db8bfcd458d83135f 117 PRINTS PR00061 Ribosomal protein L19 signature 4 33 1.9E-41 T 10-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0552 e58c541cdf36ba4db8bfcd458d83135f 117 PRINTS PR00061 Ribosomal protein L19 signature 88 113 1.9E-41 T 10-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0552 e58c541cdf36ba4db8bfcd458d83135f 117 PRINTS PR00061 Ribosomal protein L19 signature 34 63 1.9E-41 T 10-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0552 e58c541cdf36ba4db8bfcd458d83135f 117 Gene3D G3DSA:2.30.30.790 4 117 1.2E-17 T 10-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0552 e58c541cdf36ba4db8bfcd458d83135f 117 Pfam PF01245 Ribosomal protein L19 3 113 2.3E-50 T 10-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0552 e58c541cdf36ba4db8bfcd458d83135f 117 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 10-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_2426 e69b4a1bd0512699816b5f5318a2f2dd 349 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 349 80.251 T 10-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_2426 e69b4a1bd0512699816b5f5318a2f2dd 349 Pfam PF01565 FAD binding domain 22 144 1.5E-17 T 10-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 VF_2426 e69b4a1bd0512699816b5f5318a2f2dd 349 Gene3D G3DSA:3.30.465.10 73 222 8.2E-56 T 10-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VF_2426 e69b4a1bd0512699816b5f5318a2f2dd 349 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 210 331 3.1E-32 T 10-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_2426 e69b4a1bd0512699816b5f5318a2f2dd 349 Gene3D G3DSA:3.90.78.10 223 347 6.3E-42 T 10-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_2426 e69b4a1bd0512699816b5f5318a2f2dd 349 SUPERFAMILY SSF56194 206 332 3.66E-45 T 10-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_2426 e69b4a1bd0512699816b5f5318a2f2dd 349 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 9 331 5.5E-90 T 10-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_2426 e69b4a1bd0512699816b5f5318a2f2dd 349 SUPERFAMILY SSF56176 9 198 1.91E-42 T 10-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VF_2426 e69b4a1bd0512699816b5f5318a2f2dd 349 Gene3D G3DSA:3.30.43.10 1 71 1.0E-16 T 10-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 VF_0426 830a6114a26eeafb063cba49dcaf6deb 143 Pfam PF14467 Domain of unknown function (DUF4426) 24 142 2.0E-49 T 10-10-2018 IPR025218 Domain of unknown function DUF4426 VF_0426 830a6114a26eeafb063cba49dcaf6deb 143 Gene3D G3DSA:2.60.40.3340 14 143 6.5E-41 T 10-10-2018 VF_1039 a4102fc8cf3e1a077df16fe1db4d7b9c 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VF_1039 a4102fc8cf3e1a077df16fe1db4d7b9c 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 8.1E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1039 a4102fc8cf3e1a077df16fe1db4d7b9c 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 8.1E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1039 a4102fc8cf3e1a077df16fe1db4d7b9c 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 8.1E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1039 a4102fc8cf3e1a077df16fe1db4d7b9c 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 8.1E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1039 a4102fc8cf3e1a077df16fe1db4d7b9c 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 8.1E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1039 a4102fc8cf3e1a077df16fe1db4d7b9c 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 8.1E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1039 a4102fc8cf3e1a077df16fe1db4d7b9c 246 Pfam PF00106 short chain dehydrogenase 13 208 3.2E-51 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1039 a4102fc8cf3e1a077df16fe1db4d7b9c 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 199 0.0027 T 10-10-2018 VF_1039 a4102fc8cf3e1a077df16fe1db4d7b9c 246 SUPERFAMILY SSF51735 9 241 8.82E-62 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1039 a4102fc8cf3e1a077df16fe1db4d7b9c 246 Gene3D G3DSA:3.40.50.720 1 245 5.5E-69 T 10-10-2018 VF_A0886 44ac50db5ef968fd237c495311123f56 514 Pfam PF10995 GGDEF I-site like or GIL domain 161 476 1.7E-107 T 10-10-2018 IPR017745 BcsE, GIL domain GO:0035438 VF_A0886 44ac50db5ef968fd237c495311123f56 514 TIGRFAM TIGR03369 cellulose_bcsE: cellulose biosynthesis protein BcsE 156 477 1.6E-123 T 10-10-2018 IPR017745 BcsE, GIL domain GO:0035438 VF_2322 f7f6e70db3b8532bc52f96e47dfb5f03 433 Pfam PF01926 50S ribosome-binding GTPase 200 318 7.3E-20 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_2322 f7f6e70db3b8532bc52f96e47dfb5f03 433 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 2.5E-31 T 10-10-2018 IPR025121 GTPase HflX, N-terminal VF_2322 f7f6e70db3b8532bc52f96e47dfb5f03 433 Gene3D G3DSA:3.40.50.11060 19 138 3.1E-36 T 10-10-2018 VF_2322 f7f6e70db3b8532bc52f96e47dfb5f03 433 Hamap MF_00900 GTPase HflX [hflX]. 27 387 46.68 T 10-10-2018 IPR016496 GTPase HflX GO:0005525 VF_2322 f7f6e70db3b8532bc52f96e47dfb5f03 433 PIRSF PIRSF006809 3 422 7.3E-147 T 10-10-2018 IPR016496 GTPase HflX GO:0005525 VF_2322 f7f6e70db3b8532bc52f96e47dfb5f03 433 SUPERFAMILY SSF52540 197 373 3.2E-41 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2322 f7f6e70db3b8532bc52f96e47dfb5f03 433 Gene3D G3DSA:3.40.50.300 197 369 3.4E-41 T 10-10-2018 VF_2322 f7f6e70db3b8532bc52f96e47dfb5f03 433 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 2.2E-27 T 10-10-2018 IPR032305 GTP-binding protein, middle domain VF_2322 f7f6e70db3b8532bc52f96e47dfb5f03 433 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 361 1.0E-152 T 10-10-2018 IPR016496 GTPase HflX GO:0005525 VF_2322 f7f6e70db3b8532bc52f96e47dfb5f03 433 SUPERFAMILY SSF54980 364 430 2.09E-17 T 10-10-2018 IPR035647 EF-G domain III/V-like VF_2322 f7f6e70db3b8532bc52f96e47dfb5f03 433 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 221 239 1.4E-9 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_2322 f7f6e70db3b8532bc52f96e47dfb5f03 433 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 1.4E-9 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_2322 f7f6e70db3b8532bc52f96e47dfb5f03 433 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 1.4E-9 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_1811 2916f8f9220c4fbacf0528ad80cf4fee 442 Pfam PF00108 Thiolase, N-terminal domain 21 294 3.2E-60 T 10-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 VF_1811 2916f8f9220c4fbacf0528ad80cf4fee 442 Pfam PF02803 Thiolase, C-terminal domain 302 440 2.3E-36 T 10-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 VF_1811 2916f8f9220c4fbacf0528ad80cf4fee 442 SUPERFAMILY SSF53901 302 441 4.39E-32 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_1811 2916f8f9220c4fbacf0528ad80cf4fee 442 Gene3D G3DSA:3.40.47.10 13 441 1.2E-112 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_1811 2916f8f9220c4fbacf0528ad80cf4fee 442 PIRSF PIRSF000429 15 442 4.7E-116 T 10-10-2018 IPR002155 Thiolase GO:0016747 VF_1811 2916f8f9220c4fbacf0528ad80cf4fee 442 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 23 440 2.0E-128 T 10-10-2018 IPR002155 Thiolase GO:0016747 VF_1811 2916f8f9220c4fbacf0528ad80cf4fee 442 Hamap MF_01618 3-ketoacyl-CoA thiolase [fadI]. 8 442 65.408 T 10-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 VF_1811 2916f8f9220c4fbacf0528ad80cf4fee 442 TIGRFAM TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI 13 442 4.9E-250 T 10-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 VF_1811 2916f8f9220c4fbacf0528ad80cf4fee 442 ProSitePatterns PS00737 Thiolases signature 2. 388 404 - T 10-10-2018 IPR020613 Thiolase, conserved site GO:0016747 VF_1811 2916f8f9220c4fbacf0528ad80cf4fee 442 SUPERFAMILY SSF53901 18 298 3.76E-61 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 10-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 169 3.2E-51 T 10-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 4.0E-85 T 10-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 4.0E-85 T 10-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 4.0E-85 T 10-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 3 26 4.0E-85 T 10-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 4.0E-85 T 10-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 356 378 4.0E-85 T 10-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 Gene3D G3DSA:1.20.5.320 435 482 4.4E-26 T 10-10-2018 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 SUPERFAMILY SSF51735 4 174 8.09E-57 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 SUPERFAMILY SSF48179 177 472 6.8E-126 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 4 469 2.5E-234 T 10-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 SMART SM01350 179 469 8.9E-211 T 10-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 Gene3D G3DSA:1.10.1040.10 181 434 1.2E-101 T 10-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 PIRSF PIRSF000109 1 477 8.0E-242 T 10-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 468 8.0E-126 T 10-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VF_A0470 756c8a4731f377db66d0eb5c0bd5b49b 482 Gene3D G3DSA:3.40.50.720 1 180 1.0E-56 T 10-10-2018 VF_0760 fa1fd1a0f3f8906eabd473509e37c5f4 385 SUPERFAMILY SSF51905 5 375 4.06E-55 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0760 fa1fd1a0f3f8906eabd473509e37c5f4 385 Gene3D G3DSA:3.30.9.50 81 268 1.1E-96 T 10-10-2018 VF_0760 fa1fd1a0f3f8906eabd473509e37c5f4 385 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 384 1.1E-113 T 10-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 VF_0760 fa1fd1a0f3f8906eabd473509e37c5f4 385 Pfam PF01494 FAD binding domain 6 74 7.7E-6 T 10-10-2018 IPR002938 FAD-binding domain GO:0071949 VF_0760 fa1fd1a0f3f8906eabd473509e37c5f4 385 Pfam PF01494 FAD binding domain 152 307 9.7E-20 T 10-10-2018 IPR002938 FAD-binding domain GO:0071949 VF_0760 fa1fd1a0f3f8906eabd473509e37c5f4 385 Gene3D G3DSA:3.50.50.60 6 332 1.1E-96 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0760 fa1fd1a0f3f8906eabd473509e37c5f4 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 3.4E-18 T 10-10-2018 VF_0760 fa1fd1a0f3f8906eabd473509e37c5f4 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 3.4E-18 T 10-10-2018 VF_0760 fa1fd1a0f3f8906eabd473509e37c5f4 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 310 3.4E-18 T 10-10-2018 VF_0760 fa1fd1a0f3f8906eabd473509e37c5f4 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 279 294 3.4E-18 T 10-10-2018 VF_A1075 b93a2fba39ebb9a865edde9644f83d15 359 Gene3D G3DSA:3.40.50.2000 210 358 3.5E-17 T 10-10-2018 VF_A1075 b93a2fba39ebb9a865edde9644f83d15 359 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 116 333 2.0E-13 T 10-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 VF_A1075 b93a2fba39ebb9a865edde9644f83d15 359 SUPERFAMILY SSF53756 47 342 4.39E-40 T 10-10-2018 VF_A1075 b93a2fba39ebb9a865edde9644f83d15 359 Gene3D G3DSA:3.40.50.2000 41 198 1.0E-16 T 10-10-2018 VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 332 421 4.6E-29 T 10-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 Gene3D G3DSA:3.90.600.10 330 424 3.9E-32 T 10-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 SUPERFAMILY SSF52440 1 103 4.32E-36 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 SMART SM01210 330 423 4.9E-53 T 10-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 SMART SM01209 103 296 1.8E-137 T 10-10-2018 VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 43.718 T 10-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 4.5E-82 T 10-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 10-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 423 2.0E-183 T 10-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 SUPERFAMILY SSF51246 329 424 4.81E-32 T 10-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 1.3E-34 T 10-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 SUPERFAMILY SSF56059 104 320 4.77E-66 T 10-10-2018 VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 Gene3D G3DSA:3.30.1490.20 121 190 3.1E-29 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 Gene3D G3DSA:3.30.470.20 191 329 1.3E-59 T 10-10-2018 VF_2395 fdc81d8fb300dee355e6f76a9b49421c 430 Gene3D G3DSA:3.40.50.20 2 95 1.0E-36 T 10-10-2018 VF_A0494 6416ae23fa9a55894c046b431b952618 481 SUPERFAMILY SSF52935 352 480 4.12E-37 T 10-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_A0494 6416ae23fa9a55894c046b431b952618 481 SUPERFAMILY SSF50800 74 169 1.92E-25 T 10-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily VF_A0494 6416ae23fa9a55894c046b431b952618 481 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 480 1.8E-166 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_A0494 6416ae23fa9a55894c046b431b952618 481 Gene3D G3DSA:2.40.33.10 74 172 6.7E-151 T 10-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_A0494 6416ae23fa9a55894c046b431b952618 481 Gene3D G3DSA:3.40.1380.20 342 476 6.7E-151 T 10-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_A0494 6416ae23fa9a55894c046b431b952618 481 Pfam PF02887 Pyruvate kinase, alpha/beta domain 363 478 2.2E-27 T 10-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_A0494 6416ae23fa9a55894c046b431b952618 481 SUPERFAMILY SSF51621 4 345 7.46E-85 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VF_A0494 6416ae23fa9a55894c046b431b952618 481 Pfam PF00224 Pyruvate kinase, barrel domain 6 344 1.2E-128 T 10-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_A0494 6416ae23fa9a55894c046b431b952618 481 PRINTS PR01050 Pyruvate kinase family signature 190 204 1.7E-51 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_A0494 6416ae23fa9a55894c046b431b952618 481 PRINTS PR01050 Pyruvate kinase family signature 223 249 1.7E-51 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_A0494 6416ae23fa9a55894c046b431b952618 481 PRINTS PR01050 Pyruvate kinase family signature 300 318 1.7E-51 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_A0494 6416ae23fa9a55894c046b431b952618 481 PRINTS PR01050 Pyruvate kinase family signature 319 335 1.7E-51 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_A0494 6416ae23fa9a55894c046b431b952618 481 PRINTS PR01050 Pyruvate kinase family signature 250 274 1.7E-51 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_A0494 6416ae23fa9a55894c046b431b952618 481 PRINTS PR01050 Pyruvate kinase family signature 275 299 1.7E-51 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_A0494 6416ae23fa9a55894c046b431b952618 481 PRINTS PR01050 Pyruvate kinase family signature 63 79 1.7E-51 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_A0494 6416ae23fa9a55894c046b431b952618 481 ProSitePatterns PS00110 Pyruvate kinase active site signature. 218 230 - T 10-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_A0494 6416ae23fa9a55894c046b431b952618 481 Gene3D G3DSA:3.20.20.60 6 341 6.7E-151 T 10-10-2018 VF_0341 7ccb8a4d9a56ee87d7ac29e73273a335 941 Gene3D G3DSA:3.40.50.300 6 594 1.2E-246 T 10-10-2018 VF_0341 7ccb8a4d9a56ee87d7ac29e73273a335 941 Gene3D G3DSA:3.40.50.300 617 936 1.9E-139 T 10-10-2018 VF_0341 7ccb8a4d9a56ee87d7ac29e73273a335 941 Gene3D G3DSA:1.10.8.280 287 403 1.2E-246 T 10-10-2018 VF_0341 7ccb8a4d9a56ee87d7ac29e73273a335 941 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 940 22.81 T 10-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 VF_0341 7ccb8a4d9a56ee87d7ac29e73273a335 941 ProSitePatterns PS00211 ABC transporters family signature. 830 844 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0341 7ccb8a4d9a56ee87d7ac29e73273a335 941 Pfam PF00005 ABC transporter 623 860 1.4E-10 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0341 7ccb8a4d9a56ee87d7ac29e73273a335 941 Gene3D G3DSA:1.20.1580.10 692 830 1.9E-139 T 10-10-2018 VF_0341 7ccb8a4d9a56ee87d7ac29e73273a335 941 SUPERFAMILY SSF52540 621 913 1.36E-52 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0341 7ccb8a4d9a56ee87d7ac29e73273a335 941 SUPERFAMILY SSF52540 4 569 6.97E-46 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0341 7ccb8a4d9a56ee87d7ac29e73273a335 941 Gene3D G3DSA:1.20.1580.10 90 492 1.2E-246 T 10-10-2018 VF_0341 7ccb8a4d9a56ee87d7ac29e73273a335 941 Gene3D G3DSA:3.30.190.20 130 239 1.2E-246 T 10-10-2018 VF_0341 7ccb8a4d9a56ee87d7ac29e73273a335 941 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 3 925 0.0 T 10-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 VF_0341 7ccb8a4d9a56ee87d7ac29e73273a335 941 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_2473 a91ce47f333bed8d825f026bbd219604 499 SUPERFAMILY SSF52540 108 496 1.88E-106 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2473 a91ce47f333bed8d825f026bbd219604 499 Gene3D G3DSA:3.30.450.90 90 224 4.9E-55 T 10-10-2018 VF_2473 a91ce47f333bed8d825f026bbd219604 499 Pfam PF00437 Type II/IV secretion system protein 126 391 3.4E-91 T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_2473 a91ce47f333bed8d825f026bbd219604 499 SUPERFAMILY SSF160246 13 77 1.46E-16 T 10-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily VF_2473 a91ce47f333bed8d825f026bbd219604 499 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 13 496 6.3E-226 T 10-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 VF_2473 a91ce47f333bed8d825f026bbd219604 499 SMART SM00382 252 375 1.3E-5 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2473 a91ce47f333bed8d825f026bbd219604 499 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 319 333 - T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_2473 a91ce47f333bed8d825f026bbd219604 499 Gene3D G3DSA:3.30.300.160 5 89 4.7E-27 T 10-10-2018 VF_2473 a91ce47f333bed8d825f026bbd219604 499 Gene3D G3DSA:3.40.50.300 225 499 1.1E-125 T 10-10-2018 VF_0422 32a240419ecbb0cbbc101b5a72c7bfdd 350 Gene3D G3DSA:1.10.1670.10 7 209 3.7E-88 T 10-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 VF_0422 32a240419ecbb0cbbc101b5a72c7bfdd 350 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 4 269 2.6E-124 T 10-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 VF_0422 32a240419ecbb0cbbc101b5a72c7bfdd 350 Gene3D G3DSA:1.10.340.30 19 130 3.7E-88 T 10-10-2018 VF_0422 32a240419ecbb0cbbc101b5a72c7bfdd 350 Gene3D G3DSA:3.90.79.10 220 345 2.4E-15 T 10-10-2018 VF_0422 32a240419ecbb0cbbc101b5a72c7bfdd 350 Pfam PF00633 Helix-hairpin-helix motif 98 125 7.7E-7 T 10-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 VF_0422 32a240419ecbb0cbbc101b5a72c7bfdd 350 Pfam PF14815 NUDIX domain 231 341 2.5E-24 T 10-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 VF_0422 32a240419ecbb0cbbc101b5a72c7bfdd 350 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 164 1.5E-21 T 10-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 VF_0422 32a240419ecbb0cbbc101b5a72c7bfdd 350 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 190 206 4.0E-6 T 10-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 VF_0422 32a240419ecbb0cbbc101b5a72c7bfdd 350 SUPERFAMILY SSF55811 218 342 9.89E-32 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VF_0422 32a240419ecbb0cbbc101b5a72c7bfdd 350 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 190 206 - T 10-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 VF_0422 32a240419ecbb0cbbc101b5a72c7bfdd 350 SMART SM00478 37 188 2.0E-48 T 10-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 VF_0422 32a240419ecbb0cbbc101b5a72c7bfdd 350 SUPERFAMILY SSF48150 3 223 4.87E-77 T 10-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 VF_0422 32a240419ecbb0cbbc101b5a72c7bfdd 350 SMART SM00525 189 209 1.4E-5 T 10-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 VF_0303 4dd603c9d8a749a5e7b3fe6a56eb8e11 405 Gene3D G3DSA:2.40.160.50 128 403 1.1E-9 T 10-10-2018 VF_0652 5e24053509e444244e072c0f91f0027c 1303 Gene3D G3DSA:1.10.8.750 153 214 9.6E-27 T 10-10-2018 VF_0652 5e24053509e444244e072c0f91f0027c 1303 SMART SM01211 1047 1302 8.2E-157 T 10-10-2018 VF_0652 5e24053509e444244e072c0f91f0027c 1303 SUPERFAMILY SSF55326 619 817 5.49E-70 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VF_0652 5e24053509e444244e072c0f91f0027c 1303 Gene3D G3DSA:3.30.1330.10 215 422 4.5E-41 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VF_0652 5e24053509e444244e072c0f91f0027c 1303 Gene3D G3DSA:3.30.1330.10 615 812 3.2E-25 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VF_0652 5e24053509e444244e072c0f91f0027c 1303 SUPERFAMILY SSF82697 1 151 1.05E-48 T 10-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VF_0652 5e24053509e444244e072c0f91f0027c 1303 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1301 0.0 T 10-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VF_0652 5e24053509e444244e072c0f91f0027c 1303 SUPERFAMILY SSF55326 222 429 1.01E-64 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VF_0652 5e24053509e444244e072c0f91f0027c 1303 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1303 21.373 T 10-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VF_0652 5e24053509e444244e072c0f91f0027c 1303 Gene3D G3DSA:3.90.650.10 423 607 4.3E-54 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VF_0652 5e24053509e444244e072c0f91f0027c 1303 Gene3D G3DSA:3.90.650.10 823 988 3.0E-30 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VF_0652 5e24053509e444244e072c0f91f0027c 1303 Gene3D G3DSA:3.40.50.880 989 1303 5.8E-141 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_0652 5e24053509e444244e072c0f91f0027c 1303 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1047 1300 8.8E-107 T 10-10-2018 VF_0652 5e24053509e444244e072c0f91f0027c 1303 SUPERFAMILY SSF52317 1044 1301 4.78E-99 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_0652 5e24053509e444244e072c0f91f0027c 1303 SUPERFAMILY SSF56042 831 1040 1.14E-54 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VF_0652 5e24053509e444244e072c0f91f0027c 1303 SUPERFAMILY SSF109736 155 221 3.66E-20 T 10-10-2018 VF_0652 5e24053509e444244e072c0f91f0027c 1303 Pfam PF02769 AIR synthase related protein, C-terminal domain 840 974 2.2E-14 T 10-10-2018 IPR010918 PurM-like, C-terminal domain VF_0652 5e24053509e444244e072c0f91f0027c 1303 Pfam PF02769 AIR synthase related protein, C-terminal domain 433 590 5.5E-27 T 10-10-2018 IPR010918 PurM-like, C-terminal domain VF_0652 5e24053509e444244e072c0f91f0027c 1303 SUPERFAMILY SSF56042 433 616 9.72E-53 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 SUPERFAMILY SSF55874 422 590 2.23E-37 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 SUPERFAMILY SSF158472 290 337 5.62E-7 T 10-10-2018 VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 Gene3D G3DSA:1.20.1480.50 252 349 2.7E-8 T 10-10-2018 VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 SUPERFAMILY SSF47384 354 434 1.45E-18 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 SMART SM00448 617 731 6.2E-28 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 Gene3D G3DSA:3.40.50.12740 616 736 2.8E-33 T 10-10-2018 VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 Pfam PF00512 His Kinase A (phospho-acceptor) domain 369 432 4.1E-16 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 479 591 3.0E-22 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 SMART SM00387 478 593 2.8E-27 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 SMART SM00388 368 433 5.7E-18 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 Pfam PF00072 Response regulator receiver domain 619 731 7.1E-20 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 PRINTS PR00344 Bacterial sensor protein C-terminal signature 538 548 1.2E-10 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 571 1.2E-10 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 PRINTS PR00344 Bacterial sensor protein C-terminal signature 520 534 1.2E-10 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 PRINTS PR00344 Bacterial sensor protein C-terminal signature 577 590 1.2E-10 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 SUPERFAMILY SSF52172 616 735 5.55E-29 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 Gene3D G3DSA:3.30.565.10 432 590 9.5E-37 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0233 78a84af126a2feed2898fe10c2fc7bef 736 Gene3D G3DSA:1.10.287.130 350 431 1.1E-21 T 10-10-2018 VF_A0151 590d718c0d9a3fbe76027cff21bd886d 500 SUPERFAMILY SSF52540 73 359 1.57E-75 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0151 590d718c0d9a3fbe76027cff21bd886d 500 Pfam PF00270 DEAD/DEAH box helicase 26 194 1.1E-48 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_A0151 590d718c0d9a3fbe76027cff21bd886d 500 Gene3D G3DSA:3.40.50.300 212 382 2.4E-49 T 10-10-2018 VF_A0151 590d718c0d9a3fbe76027cff21bd886d 500 Gene3D G3DSA:3.40.50.300 1 210 6.9E-77 T 10-10-2018 VF_A0151 590d718c0d9a3fbe76027cff21bd886d 500 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 10-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VF_A0151 590d718c0d9a3fbe76027cff21bd886d 500 SMART SM00490 257 338 6.4E-32 T 10-10-2018 IPR001650 Helicase, C-terminal VF_A0151 590d718c0d9a3fbe76027cff21bd886d 500 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 494 52.601 T 10-10-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 VF_A0151 590d718c0d9a3fbe76027cff21bd886d 500 SMART SM00487 20 221 3.1E-64 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_A0151 590d718c0d9a3fbe76027cff21bd886d 500 Pfam PF00271 Helicase conserved C-terminal domain 230 338 1.5E-27 T 10-10-2018 IPR001650 Helicase, C-terminal VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 SUPERFAMILY SSF81653 269 365 9.02E-21 T 10-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 Gene3D G3DSA:2.70.150.20 264 370 3.9E-31 T 10-10-2018 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 Pfam PF00403 Heavy-metal-associated domain 81 133 2.7E-10 T 10-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 237 740 9.4E-80 T 10-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 Gene3D G3DSA:3.40.1110.10 477 596 6.3E-81 T 10-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 315 329 5.4E-29 T 10-10-2018 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 466 480 5.4E-29 T 10-10-2018 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 611 621 5.4E-29 T 10-10-2018 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 662 681 5.4E-29 T 10-10-2018 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 589 600 5.4E-29 T 10-10-2018 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 685 697 5.4E-29 T 10-10-2018 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 Gene3D G3DSA:3.30.70.100 77 143 1.0E-9 T 10-10-2018 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 PRINTS PR00941 Cadmium-transporting ATPase signature 331 347 2.6E-7 T 10-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 PRINTS PR00941 Cadmium-transporting ATPase signature 90 111 2.6E-7 T 10-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 PRINTS PR00941 Cadmium-transporting ATPase signature 249 269 2.6E-7 T 10-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 PRINTS PR00941 Cadmium-transporting ATPase signature 350 364 2.6E-7 T 10-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 Pfam PF00702 haloacid dehalogenase-like hydrolase 463 675 1.3E-35 T 10-10-2018 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 Gene3D G3DSA:3.40.50.1000 447 714 6.3E-81 T 10-10-2018 IPR023214 HAD superfamily VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 Pfam PF00122 E1-E2 ATPase 265 446 5.6E-50 T 10-10-2018 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 SUPERFAMILY SSF55008 79 140 1.7E-11 T 10-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 ProSitePatterns PS01047 Heavy-metal-associated domain. 81 110 - T 10-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 214 537 9.6E-95 T 10-10-2018 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 SUPERFAMILY SSF81665 217 750 1.57E-20 T 10-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 214 764 6.4E-177 T 10-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 468 474 - T 10-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 VF_1522 c8625be9a3c10d929b8ff30c6e67c1af 771 SUPERFAMILY SSF56784 465 762 5.15E-51 T 10-10-2018 IPR036412 HAD-like superfamily VF_A0097 b280b0aa119c3e2ba1389f66a579bf40 381 Gene3D G3DSA:3.40.190.10 297 328 3.4E-7 T 10-10-2018 VF_A0097 b280b0aa119c3e2ba1389f66a579bf40 381 Pfam PF13416 Bacterial extracellular solute-binding protein 56 354 4.6E-20 T 10-10-2018 IPR006059 Bacterial extracellular solute-binding protein VF_A0097 b280b0aa119c3e2ba1389f66a579bf40 381 Gene3D G3DSA:3.40.190.10 26 195 3.4E-6 T 10-10-2018 VF_A0097 b280b0aa119c3e2ba1389f66a579bf40 381 Gene3D G3DSA:3.40.190.10 229 296 3.4E-7 T 10-10-2018 VF_A0097 b280b0aa119c3e2ba1389f66a579bf40 381 PIRSF PIRSF029172 1 381 6.1E-165 T 10-10-2018 IPR027020 Protein ynjB VF_A0097 b280b0aa119c3e2ba1389f66a579bf40 381 SUPERFAMILY SSF53850 33 379 2.17E-39 T 10-10-2018 VF_2249 f83be2925d499174093a629926a09cdd 338 SUPERFAMILY SSF53067 101 309 3.45E-44 T 10-10-2018 VF_2249 f83be2925d499174093a629926a09cdd 338 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 306 7.7E-127 T 10-10-2018 IPR017861 Kae1/TsaD family VF_2249 f83be2925d499174093a629926a09cdd 338 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 313 2.8E-136 T 10-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 VF_2249 f83be2925d499174093a629926a09cdd 338 Gene3D G3DSA:3.30.420.40 129 293 1.3E-132 T 10-10-2018 VF_2249 f83be2925d499174093a629926a09cdd 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 3.0E-51 T 10-10-2018 IPR017861 Kae1/TsaD family VF_2249 f83be2925d499174093a629926a09cdd 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 3.0E-51 T 10-10-2018 IPR017861 Kae1/TsaD family VF_2249 f83be2925d499174093a629926a09cdd 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 3.0E-51 T 10-10-2018 IPR017861 Kae1/TsaD family VF_2249 f83be2925d499174093a629926a09cdd 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 3.0E-51 T 10-10-2018 IPR017861 Kae1/TsaD family VF_2249 f83be2925d499174093a629926a09cdd 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 3.0E-51 T 10-10-2018 IPR017861 Kae1/TsaD family VF_2249 f83be2925d499174093a629926a09cdd 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 3.0E-51 T 10-10-2018 IPR017861 Kae1/TsaD family VF_2249 f83be2925d499174093a629926a09cdd 338 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 64.118 T 10-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 VF_2249 f83be2925d499174093a629926a09cdd 338 SUPERFAMILY SSF53067 3 123 1.1E-30 T 10-10-2018 VF_2249 f83be2925d499174093a629926a09cdd 338 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 10-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 VF_2249 f83be2925d499174093a629926a09cdd 338 Pfam PF00814 Glycoprotease family 24 307 2.2E-103 T 10-10-2018 IPR000905 Gcp-like domain VF_2249 f83be2925d499174093a629926a09cdd 338 Gene3D G3DSA:3.30.420.40 3 315 1.3E-132 T 10-10-2018 VF_0326 3bad4f8a93c0de65f163c85ccc258bee 419 Pfam PF02687 FtsX-like permease family 317 409 9.2E-12 T 10-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VF_0326 3bad4f8a93c0de65f163c85ccc258bee 419 Pfam PF12704 MacB-like periplasmic core domain 20 194 3.8E-13 T 10-10-2018 IPR025857 MacB-like periplasmic core domain VF_2227 bcbda787a8801a61604137fbabe8d266 758 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 34 469 5.4E-136 T 10-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VF_2227 bcbda787a8801a61604137fbabe8d266 758 Gene3D G3DSA:1.10.268.10 371 456 1.0E-179 T 10-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VF_2227 bcbda787a8801a61604137fbabe8d266 758 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 10 744 0.0 T 10-10-2018 VF_2227 bcbda787a8801a61604137fbabe8d266 758 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 6 745 33.684 T 10-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2227 bcbda787a8801a61604137fbabe8d266 758 Gene3D G3DSA:3.30.1360.40 240 333 1.0E-179 T 10-10-2018 VF_2227 bcbda787a8801a61604137fbabe8d266 758 SUPERFAMILY SSF56719 33 485 5.23E-156 T 10-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VF_2227 bcbda787a8801a61604137fbabe8d266 758 Gene3D G3DSA:2.120.10.90 502 734 2.4E-13 T 10-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VF_2227 bcbda787a8801a61604137fbabe8d266 758 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 600 640 0.31 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VF_2227 bcbda787a8801a61604137fbabe8d266 758 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 647 680 5.9E-7 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VF_2227 bcbda787a8801a61604137fbabe8d266 758 SUPERFAMILY SSF101904 499 743 5.62E-51 T 10-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VF_2227 bcbda787a8801a61604137fbabe8d266 758 Gene3D G3DSA:3.90.199.10 34 483 1.0E-179 T 10-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 VF_2227 bcbda787a8801a61604137fbabe8d266 758 SMART SM00434 13 463 3.2E-233 T 10-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VF_1584 94c86dbda9d22d64808f6d648a650f59 216 Pfam PF04399 Glutaredoxin 2, C terminal domain 86 215 4.4E-40 T 10-10-2018 IPR007494 Glutaredoxin 2, C-terminal VF_1584 94c86dbda9d22d64808f6d648a650f59 216 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 72 1.5E-13 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VF_1584 94c86dbda9d22d64808f6d648a650f59 216 TIGRFAM TIGR02182 GRXB: glutaredoxin, GrxB family 2 211 2.2E-63 T 10-10-2018 IPR011901 Glutaredoxin-2 GO:0005829|GO:0097573 VF_1584 94c86dbda9d22d64808f6d648a650f59 216 Gene3D G3DSA:3.40.30.10 8 84 7.4E-30 T 10-10-2018 VF_1584 94c86dbda9d22d64808f6d648a650f59 216 ProSitePatterns PS00195 Glutaredoxin active site. 3 18 - T 10-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 VF_1584 94c86dbda9d22d64808f6d648a650f59 216 Gene3D G3DSA:1.20.1050.10 91 216 7.8E-38 T 10-10-2018 VF_1584 94c86dbda9d22d64808f6d648a650f59 216 SUPERFAMILY SSF52833 1 77 1.38E-18 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1584 94c86dbda9d22d64808f6d648a650f59 216 SUPERFAMILY SSF47616 78 216 2.46E-44 T 10-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VF_A0067 8183273ab17db1df27d1429f63edbab3 402 SUPERFAMILY SSF103473 9 393 4.97E-57 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0067 8183273ab17db1df27d1429f63edbab3 402 Pfam PF07690 Major Facilitator Superfamily 23 355 2.5E-36 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_A0067 8183273ab17db1df27d1429f63edbab3 402 Gene3D G3DSA:1.20.1250.20 8 393 1.0E-48 T 10-10-2018 VF_0716 ed3dd8d339a11cd90f8474e25e725f9e 482 SMART SM00981 75 165 8.8E-24 T 10-10-2018 IPR004114 THUMP domain GO:0003723 VF_0716 ed3dd8d339a11cd90f8474e25e725f9e 482 SUPERFAMILY SSF52821 405 481 6.31E-11 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_0716 ed3dd8d339a11cd90f8474e25e725f9e 482 Gene3D G3DSA:3.40.50.620 175 396 1.1E-52 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0716 ed3dd8d339a11cd90f8474e25e725f9e 482 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 382 482 3.9E-40 T 10-10-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 KEGG: 00730+2.8.1.4 VF_0716 ed3dd8d339a11cd90f8474e25e725f9e 482 SUPERFAMILY SSF143437 1 173 2.96E-45 T 10-10-2018 VF_0716 ed3dd8d339a11cd90f8474e25e725f9e 482 SUPERFAMILY SSF52402 174 373 3.72E-43 T 10-10-2018 VF_0716 ed3dd8d339a11cd90f8474e25e725f9e 482 Gene3D G3DSA:3.30.2130.30 1 174 1.0E-30 T 10-10-2018 VF_0716 ed3dd8d339a11cd90f8474e25e725f9e 482 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 482 220.201 T 10-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 VF_0716 ed3dd8d339a11cd90f8474e25e725f9e 482 Gene3D G3DSA:3.40.250.10 397 482 1.0E-10 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_0716 ed3dd8d339a11cd90f8474e25e725f9e 482 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 369 3.4E-111 T 10-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 VF_0716 ed3dd8d339a11cd90f8474e25e725f9e 482 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 175 369 1.9E-69 T 10-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 VF_0716 ed3dd8d339a11cd90f8474e25e725f9e 482 Pfam PF02926 THUMP domain 29 163 1.3E-21 T 10-10-2018 IPR004114 THUMP domain GO:0003723 VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 Pfam PF13426 PAS domain 376 479 2.4E-8 T 10-10-2018 IPR000014 PAS domain VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 Pfam PF17152 Periplasmic sensor domain 47 119 5.1E-9 T 10-10-2018 IPR033417 Periplasmic sensor domain CHASE8 VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 Pfam PF00990 Diguanylate cyclase, GGDEF domain 490 647 1.0E-42 T 10-10-2018 IPR000160 GGDEF domain VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 SUPERFAMILY SSF158472 187 236 5.62E-5 T 10-10-2018 VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 SMART SM00304 186 239 1.0E-6 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 Gene3D G3DSA:3.30.70.270 484 654 5.3E-50 T 10-10-2018 VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 Gene3D G3DSA:3.30.450.20 361 482 2.8E-16 T 10-10-2018 VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 SMART SM00091 365 431 3.9E-5 T 10-10-2018 IPR000014 PAS domain VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 SMART SM00091 253 320 4.7 T 10-10-2018 IPR000014 PAS domain VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 SUPERFAMILY SSF55073 495 652 9.42E-43 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 Gene3D G3DSA:3.30.450.20 246 360 5.1E-5 T 10-10-2018 VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 Gene3D G3DSA:1.20.1480.50 147 245 1.7E-5 T 10-10-2018 VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 365 485 1.1E-12 T 10-10-2018 IPR000014 PAS domain VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 SMART SM00267 479 652 9.0E-53 T 10-10-2018 IPR000160 GGDEF domain VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 486 651 5.3E-40 T 10-10-2018 IPR000160 GGDEF domain VF_A0567 0d601153b60e19c2744fd8d4527dd4f6 654 SUPERFAMILY SSF55785 361 476 1.5E-14 T 10-10-2018 IPR035965 PAS domain superfamily VF_A0296 79ed5eb4ed9c20cf801f80ff792a7ade 115 Pfam PF06945 Protein of unknown function (DUF1289) 16 56 3.6E-12 T 10-10-2018 IPR010710 Protein of unknown function DUF1289 VF_A0296 79ed5eb4ed9c20cf801f80ff792a7ade 115 Pfam PF14375 Cysteine-rich CWC 66 109 9.4E-7 T 10-10-2018 IPR032720 Cysteine-rich CWC VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 342 3.5E-121 T 10-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 SUPERFAMILY SSF69705 1 126 1.96E-38 T 10-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 SUPERFAMILY SSF47794 429 491 1.11E-16 T 10-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 SUPERFAMILY SSF47794 355 415 3.61E-17 T 10-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 SUPERFAMILY SSF50249 132 199 2.26E-17 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 Gene3D G3DSA:3.30.300.20 199 277 2.5E-28 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 Gene3D G3DSA:1.10.150.20 352 421 1.0E-28 T 10-10-2018 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 Gene3D G3DSA:3.30.1480.10 1 129 1.1E-41 T 10-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 Gene3D G3DSA:3.30.300.20 278 345 1.2E-24 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 Pfam PF13184 NusA-like KH domain 230 297 1.0E-27 T 10-10-2018 IPR025249 KH domain, NusA-like GO:0003723 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 Gene3D G3DSA:1.10.150.20 431 490 1.1E-24 T 10-10-2018 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 SMART SM00316 133 198 1.4E-7 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 Pfam PF14520 Helix-hairpin-helix domain 432 486 3.1E-8 T 10-10-2018 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 365 414 6.9E-21 T 10-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 440 489 2.3E-18 T 10-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 Pfam PF00575 S1 RNA binding domain 132 180 5.5E-5 T 10-10-2018 IPR003029 S1 domain GO:0003676 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 SUPERFAMILY SSF54814 279 342 3.27E-15 T 10-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 410 28.304 T 10-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 SUPERFAMILY SSF54814 204 278 2.16E-27 T 10-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 Gene3D G3DSA:2.40.50.140 135 197 1.3E-17 T 10-10-2018 VF_0485 17dd6b89ce12f48ae9206cd1aab44747 495 Pfam PF08529 NusA N-terminal domain 4 123 5.8E-33 T 10-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 VF_1496 3d905d21287c9a730edd0b0e7ee0fd3b 95 PRINTS PR00160 Glutaredoxin signature 68 81 3.6E-11 T 10-10-2018 IPR014025 Glutaredoxin subgroup VF_1496 3d905d21287c9a730edd0b0e7ee0fd3b 95 PRINTS PR00160 Glutaredoxin signature 54 67 3.6E-11 T 10-10-2018 IPR014025 Glutaredoxin subgroup VF_1496 3d905d21287c9a730edd0b0e7ee0fd3b 95 PRINTS PR00160 Glutaredoxin signature 7 25 3.6E-11 T 10-10-2018 IPR014025 Glutaredoxin subgroup VF_1496 3d905d21287c9a730edd0b0e7ee0fd3b 95 Pfam PF00462 Glutaredoxin 8 71 2.2E-15 T 10-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 VF_1496 3d905d21287c9a730edd0b0e7ee0fd3b 95 Gene3D G3DSA:3.40.30.10 1 92 8.8E-22 T 10-10-2018 VF_1496 3d905d21287c9a730edd0b0e7ee0fd3b 95 SUPERFAMILY SSF52833 2 83 1.84E-19 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1496 3d905d21287c9a730edd0b0e7ee0fd3b 95 ProSitePatterns PS00195 Glutaredoxin active site. 9 25 - T 10-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 VF_2311 478b77f8b0aaf1133c1303a1344210f7 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 73 9.8E-38 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2311 478b77f8b0aaf1133c1303a1344210f7 75 Gene3D G3DSA:4.10.640.10 20 75 2.5E-28 T 10-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2311 478b77f8b0aaf1133c1303a1344210f7 75 Pfam PF01084 Ribosomal protein S18 19 68 9.9E-25 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2311 478b77f8b0aaf1133c1303a1344210f7 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 73 1.0E-23 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2311 478b77f8b0aaf1133c1303a1344210f7 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 10-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2311 478b77f8b0aaf1133c1303a1344210f7 75 SUPERFAMILY SSF46911 3 74 4.32E-29 T 10-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2311 478b77f8b0aaf1133c1303a1344210f7 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 5.3E-18 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2311 478b77f8b0aaf1133c1303a1344210f7 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 5.3E-18 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2311 478b77f8b0aaf1133c1303a1344210f7 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 5.3E-18 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2311 478b77f8b0aaf1133c1303a1344210f7 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 5.3E-18 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2311 478b77f8b0aaf1133c1303a1344210f7 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 21.111 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_A0750 302ceaefa996b9405ac4d5863e1df753 185 SUPERFAMILY SSF55729 6 178 3.73E-42 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A0750 302ceaefa996b9405ac4d5863e1df753 185 Gene3D G3DSA:3.40.630.30 1 184 3.2E-54 T 10-10-2018 VF_A0750 302ceaefa996b9405ac4d5863e1df753 185 Pfam PF13302 Acetyltransferase (GNAT) domain 12 153 3.3E-19 T 10-10-2018 IPR000182 GNAT domain VF_1886 9b32c986b8e70a10ee870f1464a3d72b 483 Gene3D G3DSA:1.25.40.10 283 416 3.5E-9 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1886 9b32c986b8e70a10ee870f1464a3d72b 483 Gene3D G3DSA:1.25.40.10 35 209 8.1E-7 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1886 9b32c986b8e70a10ee870f1464a3d72b 483 Pfam PF13424 Tetratricopeptide repeat 215 276 3.3E-7 T 10-10-2018 VF_1886 9b32c986b8e70a10ee870f1464a3d72b 483 Gene3D G3DSA:1.25.40.10 210 282 1.4E-9 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1886 9b32c986b8e70a10ee870f1464a3d72b 483 SUPERFAMILY SSF48452 94 209 1.9E-8 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1886 9b32c986b8e70a10ee870f1464a3d72b 483 SUPERFAMILY SSF48452 175 317 1.4E-16 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1886 9b32c986b8e70a10ee870f1464a3d72b 483 SUPERFAMILY SSF48452 296 425 2.75E-5 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1886 9b32c986b8e70a10ee870f1464a3d72b 483 SMART SM00028 335 368 110.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1886 9b32c986b8e70a10ee870f1464a3d72b 483 SMART SM00028 254 287 44.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1886 9b32c986b8e70a10ee870f1464a3d72b 483 SMART SM00028 295 328 11.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1886 9b32c986b8e70a10ee870f1464a3d72b 483 SMART SM00028 214 247 1.7 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1886 9b32c986b8e70a10ee870f1464a3d72b 483 SMART SM00028 177 210 66.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1886 9b32c986b8e70a10ee870f1464a3d72b 483 SMART SM00028 96 129 98.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0314 16a01424b576c397175c34c869a1bbc4 206 Gene3D G3DSA:3.10.50.40 68 206 7.0E-49 T 10-10-2018 VF_0314 16a01424b576c397175c34c869a1bbc4 206 SUPERFAMILY SSF54534 11 205 2.16E-53 T 10-10-2018 VF_0314 16a01424b576c397175c34c869a1bbc4 206 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 2 108 1.5E-24 T 10-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 VF_0314 16a01424b576c397175c34c869a1bbc4 206 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 116 203 3.0E-26 T 10-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VF_0314 16a01424b576c397175c34c869a1bbc4 206 Gene3D G3DSA:1.10.287.460 4 67 1.6E-18 T 10-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 Gene3D G3DSA:1.20.1640.10 501 1001 2.7E-285 T 10-10-2018 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 SUPERFAMILY SSF82866 290 488 1.7E-45 T 10-10-2018 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 Gene3D G3DSA:3.30.70.1430 555 647 2.7E-285 T 10-10-2018 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 Gene3D G3DSA:3.30.2090.10 178 268 2.7E-285 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 SUPERFAMILY SSF82714 701 782 5.49E-18 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 SUPERFAMILY SSF82866 782 1005 2.49E-46 T 10-10-2018 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 SUPERFAMILY SSF82714 182 263 2.35E-18 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 Gene3D G3DSA:1.20.1640.10 10 500 2.7E-285 T 10-10-2018 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 SUPERFAMILY SSF82693 553 650 2.56E-19 T 10-10-2018 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 Gene3D G3DSA:3.30.70.1430 40 794 2.7E-285 T 10-10-2018 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 Gene3D G3DSA:3.30.70.1440 648 843 2.7E-285 T 10-10-2018 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 Gene3D G3DSA:3.30.70.1320 134 325 2.7E-285 T 10-10-2018 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 SUPERFAMILY SSF82693 136 323 8.72E-21 T 10-10-2018 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 Gene3D G3DSA:3.30.2090.10 698 786 2.7E-285 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 SUPERFAMILY SSF82693 41 130 1.34E-23 T 10-10-2018 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 8.0E-74 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 8.0E-74 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 8.0E-74 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 8.0E-74 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 PRINTS PR00702 Acriflavin resistance protein family signature 603 617 8.0E-74 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 8.0E-74 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 8.0E-74 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 8.0E-74 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 8.0E-74 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2524 a6170ed72eecae03dfc2340a46b55a01 1023 Pfam PF00873 AcrB/AcrD/AcrF family 4 1003 1.8E-272 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0570 07a3e023f1994d10a5829a38819b2623 330 Pfam PF07478 D-ala D-ala ligase C-terminus 125 323 5.6E-52 T 10-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_A0570 07a3e023f1994d10a5829a38819b2623 330 PIRSF PIRSF039102 1 330 3.3E-75 T 10-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_A0570 07a3e023f1994d10a5829a38819b2623 330 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 2 329 31.961 T 10-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_A0570 07a3e023f1994d10a5829a38819b2623 330 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 3 326 5.1E-93 T 10-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_A0570 07a3e023f1994d10a5829a38819b2623 330 Gene3D G3DSA:3.30.470.20 104 319 2.9E-79 T 10-10-2018 VF_A0570 07a3e023f1994d10a5829a38819b2623 330 SUPERFAMILY SSF56059 115 328 2.98E-44 T 10-10-2018 VF_A0570 07a3e023f1994d10a5829a38819b2623 330 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 82 93 - T 10-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_A0570 07a3e023f1994d10a5829a38819b2623 330 Gene3D G3DSA:3.40.50.20 17 324 2.9E-79 T 10-10-2018 VF_A0570 07a3e023f1994d10a5829a38819b2623 330 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 271 299 - T 10-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_A0570 07a3e023f1994d10a5829a38819b2623 330 SUPERFAMILY SSF52440 3 114 7.29E-25 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VF_A0570 07a3e023f1994d10a5829a38819b2623 330 Gene3D G3DSA:3.30.1490.20 131 198 2.9E-79 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VF_A0570 07a3e023f1994d10a5829a38819b2623 330 Pfam PF01820 D-ala D-ala ligase N-terminus 4 105 5.5E-19 T 10-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_1707 1d1124fe2859ab92c5fd5c545908c39b 373 SUPERFAMILY SSF53098 2 210 2.63E-66 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_1707 1d1124fe2859ab92c5fd5c545908c39b 373 TIGRFAM TIGR01388 rnd: ribonuclease D 5 368 4.1E-135 T 10-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 VF_1707 1d1124fe2859ab92c5fd5c545908c39b 373 Pfam PF01612 3'-5' exonuclease 4 170 4.5E-40 T 10-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 VF_1707 1d1124fe2859ab92c5fd5c545908c39b 373 SMART SM00474 3 171 4.7E-41 T 10-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 VF_1707 1d1124fe2859ab92c5fd5c545908c39b 373 Gene3D G3DSA:3.30.420.10 1 193 1.1E-65 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_1707 1d1124fe2859ab92c5fd5c545908c39b 373 Hamap MF_01899 Ribonuclease D [rnd]. 3 372 45.283 T 10-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 VF_1707 1d1124fe2859ab92c5fd5c545908c39b 373 Pfam PF00570 HRDC domain 213 277 3.8E-9 T 10-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 VF_1707 1d1124fe2859ab92c5fd5c545908c39b 373 Gene3D G3DSA:1.10.150.80 196 293 1.2E-15 T 10-10-2018 VF_1707 1d1124fe2859ab92c5fd5c545908c39b 373 SUPERFAMILY SSF47819 193 301 7.63E-24 T 10-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 VF_1707 1d1124fe2859ab92c5fd5c545908c39b 373 SUPERFAMILY SSF47819 296 371 2.16E-19 T 10-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 VF_1707 1d1124fe2859ab92c5fd5c545908c39b 373 Gene3D G3DSA:1.10.150.80 294 373 8.9E-25 T 10-10-2018 VF_2116 a195dd70713f9538643bf666dc02dcfd 427 SUPERFAMILY SSF53686 1 425 3.27E-133 T 10-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VF_2116 a195dd70713f9538643bf666dc02dcfd 427 Gene3D G3DSA:3.40.50.1100 101 400 5.9E-139 T 10-10-2018 VF_2116 a195dd70713f9538643bf666dc02dcfd 427 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 95 109 - T 10-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 VF_2116 a195dd70713f9538643bf666dc02dcfd 427 Gene3D G3DSA:3.90.1380.10 1 79 3.4E-30 T 10-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily VF_2116 a195dd70713f9538643bf666dc02dcfd 427 Gene3D G3DSA:3.40.50.1100 83 393 5.9E-139 T 10-10-2018 VF_2116 a195dd70713f9538643bf666dc02dcfd 427 TIGRFAM TIGR00260 thrC: threonine synthase 50 394 8.4E-117 T 10-10-2018 IPR004450 Threonine synthase-like VF_2116 a195dd70713f9538643bf666dc02dcfd 427 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 85 367 8.1E-26 T 10-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VF_2116 a195dd70713f9538643bf666dc02dcfd 427 Pfam PF14821 Threonine synthase N terminus 8 78 3.9E-10 T 10-10-2018 IPR029144 Threonine synthase, N-terminal VF_0957 e29957b78ccc9fed8e4e539acb6c112f 136 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 11 125 5.5E-36 T 10-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 VF_0957 e29957b78ccc9fed8e4e539acb6c112f 136 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 6 129 5.5E-48 T 10-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 VF_0957 e29957b78ccc9fed8e4e539acb6c112f 136 Gene3D G3DSA:3.10.129.10 1 134 4.1E-39 T 10-10-2018 VF_0957 e29957b78ccc9fed8e4e539acb6c112f 136 Pfam PF03061 Thioesterase superfamily 20 105 2.4E-15 T 10-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 VF_0957 e29957b78ccc9fed8e4e539acb6c112f 136 PIRSF PIRSF003230 1 135 2.2E-43 T 10-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 VF_0957 e29957b78ccc9fed8e4e539acb6c112f 136 SUPERFAMILY SSF54637 1 131 9.86E-40 T 10-10-2018 IPR029069 HotDog domain superfamily VF_1970 45f879cc6b95d0b4f9f9cb36e6e8867b 350 Gene3D G3DSA:3.40.1780.10 14 345 2.9E-119 T 10-10-2018 VF_1970 45f879cc6b95d0b4f9f9cb36e6e8867b 350 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 346 47.235 T 10-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 VF_1970 45f879cc6b95d0b4f9f9cb36e6e8867b 350 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 346 1.2E-157 T 10-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 VF_1970 45f879cc6b95d0b4f9f9cb36e6e8867b 350 SUPERFAMILY SSF111337 1 345 5.89E-139 T 10-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 VF_1970 45f879cc6b95d0b4f9f9cb36e6e8867b 350 Gene3D G3DSA:2.40.10.240 64 163 2.9E-119 T 10-10-2018 VF_1970 45f879cc6b95d0b4f9f9cb36e6e8867b 350 Pfam PF02547 Queuosine biosynthesis protein 3 345 9.3E-135 T 10-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 VF_A0423 b7a426ed31ccfa0dc519c3eba0452d78 767 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 140 731 1.3E-126 T 10-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 VF_A0423 b7a426ed31ccfa0dc519c3eba0452d78 767 SUPERFAMILY SSF56281 508 745 7.85E-46 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VF_A0423 b7a426ed31ccfa0dc519c3eba0452d78 767 Pfam PF13567 Domain of unknown function (DUF4131) 32 187 8.8E-10 T 10-10-2018 IPR025405 Domain of unknown function DUF4131 VF_A0423 b7a426ed31ccfa0dc519c3eba0452d78 767 SMART SM00849 521 702 6.9E-9 T 10-10-2018 IPR001279 Metallo-beta-lactamase VF_A0423 b7a426ed31ccfa0dc519c3eba0452d78 767 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 239 422 3.3E-28 T 10-10-2018 IPR004477 ComEC/Rec2-related protein VF_A0423 b7a426ed31ccfa0dc519c3eba0452d78 767 Pfam PF03772 Competence protein 218 486 3.3E-61 T 10-10-2018 IPR004477 ComEC/Rec2-related protein VF_A0423 b7a426ed31ccfa0dc519c3eba0452d78 767 Pfam PF00753 Metallo-beta-lactamase superfamily 519 701 6.0E-16 T 10-10-2018 IPR001279 Metallo-beta-lactamase VF_A0423 b7a426ed31ccfa0dc519c3eba0452d78 767 Gene3D G3DSA:3.60.15.10 509 746 1.9E-47 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VF_0471 c0bb68796d6b60e76b6dc917d97d8388 269 Gene3D G3DSA:3.40.50.720 3 264 9.0E-101 T 10-10-2018 VF_0471 c0bb68796d6b60e76b6dc917d97d8388 269 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 2 125 1.7E-38 T 10-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_0471 c0bb68796d6b60e76b6dc917d97d8388 269 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 264 2.4E-99 T 10-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_0471 c0bb68796d6b60e76b6dc917d97d8388 269 PIRSF PIRSF000161 1 268 1.1E-87 T 10-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_0471 c0bb68796d6b60e76b6dc917d97d8388 269 SUPERFAMILY SSF51735 1 268 2.51E-51 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0471 c0bb68796d6b60e76b6dc917d97d8388 269 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 128 264 2.6E-43 T 10-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_0471 c0bb68796d6b60e76b6dc917d97d8388 269 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 150 167 - T 10-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_0471 c0bb68796d6b60e76b6dc917d97d8388 269 SUPERFAMILY SSF55347 127 236 4.14E-37 T 10-10-2018 VF_0471 c0bb68796d6b60e76b6dc917d97d8388 269 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 265 35.494 T 10-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_0471 c0bb68796d6b60e76b6dc917d97d8388 269 Gene3D G3DSA:3.30.360.10 127 234 9.0E-101 T 10-10-2018 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 5.5E-27 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 5.5E-27 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 5.5E-27 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 PRINTS PR00702 Acriflavin resistance protein family signature 331 354 5.5E-27 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 5.5E-27 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 5.5E-27 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 SUPERFAMILY SSF82866 790 1026 9.81E-47 T 10-10-2018 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 Gene3D G3DSA:1.20.1640.10 11 508 3.5E-252 T 10-10-2018 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 SUPERFAMILY SSF82866 290 491 4.19E-39 T 10-10-2018 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 SUPERFAMILY SSF82714 184 262 3.92E-10 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 Gene3D G3DSA:3.30.70.1440 654 849 3.5E-252 T 10-10-2018 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 Gene3D G3DSA:3.30.70.1320 135 327 3.5E-252 T 10-10-2018 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 Gene3D G3DSA:3.30.70.1430 565 653 3.5E-252 T 10-10-2018 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 Gene3D G3DSA:3.30.70.1430 41 799 3.5E-252 T 10-10-2018 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 Pfam PF00873 AcrB/AcrD/AcrF family 4 1021 5.4E-165 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 SUPERFAMILY SSF82693 149 325 7.85E-11 T 10-10-2018 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 Gene3D G3DSA:3.30.2090.10 178 268 3.5E-252 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 SUPERFAMILY SSF82693 41 132 6.28E-22 T 10-10-2018 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 Gene3D G3DSA:1.20.1640.10 509 1018 3.5E-252 T 10-10-2018 VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 Gene3D G3DSA:3.30.2090.10 703 791 3.5E-252 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_2132 b30546d3fd4eb1c7a4e87874616e9e82 1032 SUPERFAMILY SSF82714 707 787 6.93E-7 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_2289 1bfa455994fd6f7c6c11a1b8aa189371 276 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 1.7E-18 T 10-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VF_2289 1bfa455994fd6f7c6c11a1b8aa189371 276 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 1.7E-18 T 10-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VF_2289 1bfa455994fd6f7c6c11a1b8aa189371 276 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 1.7E-18 T 10-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VF_2289 1bfa455994fd6f7c6c11a1b8aa189371 276 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 1.7E-18 T 10-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VF_2289 1bfa455994fd6f7c6c11a1b8aa189371 276 Gene3D G3DSA:1.10.1020.10 57 156 7.9E-85 T 10-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 VF_2289 1bfa455994fd6f7c6c11a1b8aa189371 276 Gene3D G3DSA:3.40.50.150 7 239 7.9E-85 T 10-10-2018 VF_2289 1bfa455994fd6f7c6c11a1b8aa189371 276 SUPERFAMILY SSF53335 5 268 3.88E-75 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_2289 1bfa455994fd6f7c6c11a1b8aa189371 276 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 252 1.0E-69 T 10-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VF_2289 1bfa455994fd6f7c6c11a1b8aa189371 276 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VF_2289 1bfa455994fd6f7c6c11a1b8aa189371 276 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 268 1.2E-94 T 10-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VF_2289 1bfa455994fd6f7c6c11a1b8aa189371 276 PIRSF PIRSF000398 1 274 1.3E-70 T 10-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 VF_A0524 3b11f61e42cec2a599fb3a95fd7ce377 148 Pfam PF00075 RNase H 5 146 3.9E-29 T 10-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 VF_A0524 3b11f61e42cec2a599fb3a95fd7ce377 148 Gene3D G3DSA:3.30.420.10 1 148 3.8E-40 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_A0524 3b11f61e42cec2a599fb3a95fd7ce377 148 SUPERFAMILY SSF53098 4 147 6.2E-37 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_2558 3e674c3371a4417074ada48ca092fe93 315 SUPERFAMILY SSF56752 6 306 6.93E-104 T 10-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 VF_2558 3e674c3371a4417074ada48ca092fe93 315 Gene3D G3DSA:3.30.470.10 9 126 3.5E-106 T 10-10-2018 VF_2558 3e674c3371a4417074ada48ca092fe93 315 ProSitePatterns PS00770 Aminotransferases class-IV signature. 193 222 - T 10-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 VF_2558 3e674c3371a4417074ada48ca092fe93 315 Gene3D G3DSA:3.20.10.10 137 288 3.5E-106 T 10-10-2018 VF_2558 3e674c3371a4417074ada48ca092fe93 315 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 9 306 1.0E-140 T 10-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 VF_2558 3e674c3371a4417074ada48ca092fe93 315 Pfam PF01063 Amino-transferase class IV 35 267 6.8E-47 T 10-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 VF_1832 aff393b0d570da0ef7e3761768b1057f 238 PIRSF PIRSF002884 13 238 8.0E-88 T 10-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 VF_1832 aff393b0d570da0ef7e3761768b1057f 238 SUPERFAMILY SSF75708 30 237 1.44E-65 T 10-10-2018 VF_1832 aff393b0d570da0ef7e3761768b1057f 238 Gene3D G3DSA:1.10.287.500 55 189 4.7E-46 T 10-10-2018 VF_1832 aff393b0d570da0ef7e3761768b1057f 238 Pfam PF04344 Chemotaxis phosphatase, CheZ 36 238 3.0E-76 T 10-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 VF_A0481 29f4302135d5f0408d81f2bc2a343520 547 SUPERFAMILY SSF58104 246 547 1.24E-67 T 10-10-2018 VF_A0481 29f4302135d5f0408d81f2bc2a343520 547 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 348 511 3.0E-40 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0481 29f4302135d5f0408d81f2bc2a343520 547 SMART SM00283 285 546 8.0E-62 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0481 29f4302135d5f0408d81f2bc2a343520 547 Gene3D G3DSA:1.10.287.950 213 547 2.5E-62 T 10-10-2018 VF_0017 6743754dd8f2c8284c362fd07a0db004 546 Pfam PF00128 Alpha amylase, catalytic domain 155 456 2.6E-17 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_0017 6743754dd8f2c8284c362fd07a0db004 546 SMART SM00642 126 508 4.8E-9 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_0017 6743754dd8f2c8284c362fd07a0db004 546 Gene3D G3DSA:3.20.20.80 115 513 6.7E-42 T 10-10-2018 VF_0017 6743754dd8f2c8284c362fd07a0db004 546 SUPERFAMILY SSF51445 115 514 3.39E-36 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_0353 36169555de8fb4f64b733f7cccea813b 177 SUPERFAMILY SSF50249 4 177 1.06E-61 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_0353 36169555de8fb4f64b733f7cccea813b 177 Hamap MF_00984 Single-stranded DNA-binding protein. 6 118 39.474 T 10-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 VF_0353 36169555de8fb4f64b733f7cccea813b 177 Pfam PF00436 Single-strand binding protein family 6 106 4.2E-43 T 10-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 VF_0353 36169555de8fb4f64b733f7cccea813b 177 Gene3D G3DSA:2.40.50.140 1 116 1.5E-49 T 10-10-2018 VF_0353 36169555de8fb4f64b733f7cccea813b 177 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 177 1.7E-62 T 10-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 VF_0353 36169555de8fb4f64b733f7cccea813b 177 PIRSF PIRSF002070 2 172 1.1E-39 T 10-10-2018 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 SMART SM00400 36 90 2.9E-36 T 10-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 Pfam PF13155 Toprim-like 269 356 5.7E-14 T 10-10-2018 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 SUPERFAMILY SSF57783 4 101 6.63E-38 T 10-10-2018 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 SUPERFAMILY SSF56731 121 433 7.32E-114 T 10-10-2018 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 PIRSF PIRSF002811 2 587 2.8E-143 T 10-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 Gene3D G3DSA:3.40.1360.10 247 373 2.1E-42 T 10-10-2018 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 Pfam PF08275 DNA primase catalytic core, N-terminal domain 132 257 2.5E-42 T 10-10-2018 IPR013264 DNA primase, catalytic core, N-terminal VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 Pfam PF08278 DNA primase DnaG DnaB-binding 458 581 1.4E-35 T 10-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 Pfam PF10410 DnaB-helicase binding domain of primase 375 430 5.3E-10 T 10-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 Gene3D G3DSA:3.90.580.10 1 102 3.4E-39 T 10-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 Gene3D G3DSA:1.20.50.20 374 432 1.4E-23 T 10-10-2018 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 Hamap MF_00974 DNA primase [dnaG]. 4 583 29.598 T 10-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 SUPERFAMILY SSF117023 454 586 9.81E-44 T 10-10-2018 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 TIGRFAM TIGR01391 dnaG: DNA primase 5 424 3.4E-147 T 10-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 Gene3D G3DSA:3.90.980.10 121 246 3.3E-43 T 10-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 SMART SM00493 265 336 2.9E-19 T 10-10-2018 IPR006171 TOPRIM domain VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 Pfam PF01807 CHC2 zinc finger 6 101 1.8E-41 T 10-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 SMART SM00766 457 582 2.9E-52 T 10-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 VF_2252 2eb4d25da524a5e60b3e5d4c1a159387 587 Gene3D G3DSA:1.10.860.10 446 587 4.6E-51 T 10-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal VF_2226 a8a344878f77160a8973245730815ed1 354 TIGRFAM TIGR02038 protease_degS: periplasmic serine peptidase DegS 2 352 4.6E-156 T 10-10-2018 IPR011783 Peptidase S1C, DegS GO:0004252|GO:0006508 VF_2226 a8a344878f77160a8973245730815ed1 354 SUPERFAMILY SSF50494 47 254 1.79E-59 T 10-10-2018 IPR009003 Peptidase S1, PA clan VF_2226 a8a344878f77160a8973245730815ed1 354 SUPERFAMILY SSF50156 240 347 1.97E-22 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 VF_2226 a8a344878f77160a8973245730815ed1 354 Gene3D G3DSA:2.40.10.10 31 142 2.2E-31 T 10-10-2018 VF_2226 a8a344878f77160a8973245730815ed1 354 SMART SM00228 257 339 2.9E-9 T 10-10-2018 IPR001478 PDZ domain GO:0005515 VF_2226 a8a344878f77160a8973245730815ed1 354 Gene3D G3DSA:2.40.10.10 144 257 1.7E-34 T 10-10-2018 VF_2226 a8a344878f77160a8973245730815ed1 354 PRINTS PR00834 HtrA/DegQ protease family signature 297 309 1.4E-46 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VF_2226 a8a344878f77160a8973245730815ed1 354 PRINTS PR00834 HtrA/DegQ protease family signature 152 176 1.4E-46 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VF_2226 a8a344878f77160a8973245730815ed1 354 PRINTS PR00834 HtrA/DegQ protease family signature 112 132 1.4E-46 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VF_2226 a8a344878f77160a8973245730815ed1 354 PRINTS PR00834 HtrA/DegQ protease family signature 187 204 1.4E-46 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VF_2226 a8a344878f77160a8973245730815ed1 354 PRINTS PR00834 HtrA/DegQ protease family signature 209 226 1.4E-46 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VF_2226 a8a344878f77160a8973245730815ed1 354 PRINTS PR00834 HtrA/DegQ protease family signature 91 103 1.4E-46 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VF_2226 a8a344878f77160a8973245730815ed1 354 Gene3D G3DSA:2.30.42.10 258 354 4.5E-27 T 10-10-2018 VF_2226 a8a344878f77160a8973245730815ed1 354 Pfam PF13180 PDZ domain 258 347 2.6E-16 T 10-10-2018 IPR001478 PDZ domain GO:0005515 VF_2226 a8a344878f77160a8973245730815ed1 354 Pfam PF13365 Trypsin-like peptidase domain 82 216 7.5E-30 T 10-10-2018 VF_2304 9ccda1eb9e011f4cf01858fd8edf65f9 403 SUPERFAMILY SSF69864 178 400 4.84E-86 T 10-10-2018 VF_2304 9ccda1eb9e011f4cf01858fd8edf65f9 403 Gene3D G3DSA:1.20.5.470 369 402 7.3E-8 T 10-10-2018 VF_2304 9ccda1eb9e011f4cf01858fd8edf65f9 403 SUPERFAMILY SSF52402 8 171 5.95E-48 T 10-10-2018 VF_2304 9ccda1eb9e011f4cf01858fd8edf65f9 403 Pfam PF00764 Arginosuccinate synthase 11 397 5.2E-146 T 10-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VF_2304 9ccda1eb9e011f4cf01858fd8edf65f9 403 Gene3D G3DSA:3.90.1260.10 69 357 9.4E-145 T 10-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VF_2304 9ccda1eb9e011f4cf01858fd8edf65f9 403 Hamap MF_00005 Argininosuccinate synthase [argG]. 7 403 51.5 T 10-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VF_2304 9ccda1eb9e011f4cf01858fd8edf65f9 403 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 122 133 - T 10-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VF_2304 9ccda1eb9e011f4cf01858fd8edf65f9 403 TIGRFAM TIGR00032 argG: argininosuccinate synthase 9 396 5.0E-139 T 10-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VF_2304 9ccda1eb9e011f4cf01858fd8edf65f9 403 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 13 21 - T 10-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VF_2304 9ccda1eb9e011f4cf01858fd8edf65f9 403 Gene3D G3DSA:3.40.50.620 10 178 9.4E-145 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0290 122dfb5f619ba8595a4747f94b1b9b64 283 Gene3D G3DSA:1.10.287.110 193 281 2.3E-16 T 10-10-2018 IPR036869 Chaperone J-domain superfamily VF_0290 122dfb5f619ba8595a4747f94b1b9b64 283 SMART SM00271 216 281 1.7E-18 T 10-10-2018 IPR001623 DnaJ domain VF_0290 122dfb5f619ba8595a4747f94b1b9b64 283 Pfam PF00226 DnaJ domain 217 279 1.5E-11 T 10-10-2018 IPR001623 DnaJ domain VF_0290 122dfb5f619ba8595a4747f94b1b9b64 283 PRINTS PR00625 DnaJ domain signature 219 237 2.3E-8 T 10-10-2018 IPR001623 DnaJ domain VF_0290 122dfb5f619ba8595a4747f94b1b9b64 283 PRINTS PR00625 DnaJ domain signature 237 252 2.3E-8 T 10-10-2018 IPR001623 DnaJ domain VF_0290 122dfb5f619ba8595a4747f94b1b9b64 283 PRINTS PR00625 DnaJ domain signature 261 281 2.3E-8 T 10-10-2018 IPR001623 DnaJ domain VF_0290 122dfb5f619ba8595a4747f94b1b9b64 283 SUPERFAMILY SSF46565 136 279 1.36E-31 T 10-10-2018 IPR036869 Chaperone J-domain superfamily VF_0290 122dfb5f619ba8595a4747f94b1b9b64 283 Gene3D G3DSA:1.10.3680.10 33 188 4.9E-24 T 10-10-2018 IPR029024 TerB-like VF_0290 122dfb5f619ba8595a4747f94b1b9b64 283 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 3 282 39.198 T 10-10-2018 IPR023749 Co-chaperone DjlA GO:0051087 VF_0290 122dfb5f619ba8595a4747f94b1b9b64 283 SUPERFAMILY SSF158682 45 179 4.18E-22 T 10-10-2018 IPR029024 TerB-like VF_0290 122dfb5f619ba8595a4747f94b1b9b64 283 Pfam PF05099 Tellurite resistance protein TerB 43 174 1.7E-19 T 10-10-2018 IPR007791 Co-chaperone DjlA, N-terminal VF_2093 705495b70294d00f781db3fb7d7a4d90 192 Gene3D G3DSA:1.10.1740.10 1 121 1.6E-45 T 10-10-2018 VF_2093 705495b70294d00f781db3fb7d7a4d90 192 SUPERFAMILY SSF88659 124 185 3.74E-17 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_2093 705495b70294d00f781db3fb7d7a4d90 192 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 190 2.7E-101 T 10-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_2093 705495b70294d00f781db3fb7d7a4d90 192 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 185 4.5E-33 T 10-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VF_2093 705495b70294d00f781db3fb7d7a4d90 192 Gene3D G3DSA:1.10.10.10 122 192 9.1E-22 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2093 705495b70294d00f781db3fb7d7a4d90 192 Pfam PF08281 Sigma-70, region 4 134 180 1.6E-16 T 10-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_2093 705495b70294d00f781db3fb7d7a4d90 192 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 47 78 - T 10-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_2093 705495b70294d00f781db3fb7d7a4d90 192 Pfam PF04542 Sigma-70 region 2 25 92 7.6E-18 T 10-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VF_2093 705495b70294d00f781db3fb7d7a4d90 192 SUPERFAMILY SSF88946 2 106 1.18E-32 T 10-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VF_0797 5338d5ec459919085c4563109a25d589 428 SUPERFAMILY SSF52540 64 406 2.4E-71 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0797 5338d5ec459919085c4563109a25d589 428 SUPERFAMILY SSF57716 14 49 1.71E-11 T 10-10-2018 VF_0797 5338d5ec459919085c4563109a25d589 428 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 321 397 1.3E-16 T 10-10-2018 IPR019489 Clp ATPase, C-terminal VF_0797 5338d5ec459919085c4563109a25d589 428 Gene3D G3DSA:1.10.8.60 320 428 7.0E-40 T 10-10-2018 VF_0797 5338d5ec459919085c4563109a25d589 428 SMART SM00382 115 268 9.6E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0797 5338d5ec459919085c4563109a25d589 428 SMART SM01086 321 416 7.5E-34 T 10-10-2018 IPR019489 Clp ATPase, C-terminal VF_0797 5338d5ec459919085c4563109a25d589 428 Gene3D G3DSA:3.40.50.300 61 319 3.2E-107 T 10-10-2018 VF_0797 5338d5ec459919085c4563109a25d589 428 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 9 416 1.4E-208 T 10-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 VF_0797 5338d5ec459919085c4563109a25d589 428 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 4 419 53.114 T 10-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 VF_0797 5338d5ec459919085c4563109a25d589 428 Gene3D G3DSA:3.30.50.30 2 53 4.0E-26 T 10-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily VF_0797 5338d5ec459919085c4563109a25d589 428 SMART SM00994 13 52 2.3E-23 T 10-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 VF_0797 5338d5ec459919085c4563109a25d589 428 Pfam PF06689 ClpX C4-type zinc finger 14 51 1.1E-19 T 10-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 VF_0797 5338d5ec459919085c4563109a25d589 428 Pfam PF07724 AAA domain (Cdc48 subfamily) 116 314 3.1E-47 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VF_0814 d9d08e89a316e388d7b1ce7a793e7256 258 PRINTS PR00412 Epoxide hydrolase signature 81 94 1.9E-6 T 10-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VF_0814 d9d08e89a316e388d7b1ce7a793e7256 258 PRINTS PR00412 Epoxide hydrolase signature 229 251 1.9E-6 T 10-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VF_0814 d9d08e89a316e388d7b1ce7a793e7256 258 PRINTS PR00412 Epoxide hydrolase signature 38 53 1.9E-6 T 10-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VF_0814 d9d08e89a316e388d7b1ce7a793e7256 258 SUPERFAMILY SSF53474 4 254 2.28E-50 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_0814 d9d08e89a316e388d7b1ce7a793e7256 258 Pfam PF12697 Alpha/beta hydrolase family 15 244 4.2E-19 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_0814 d9d08e89a316e388d7b1ce7a793e7256 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 38 53 1.0E-6 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_0814 d9d08e89a316e388d7b1ce7a793e7256 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 108 1.0E-6 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_0814 d9d08e89a316e388d7b1ce7a793e7256 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 81 94 1.0E-6 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_0814 d9d08e89a316e388d7b1ce7a793e7256 258 Gene3D G3DSA:3.40.50.1820 2 254 8.4E-65 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_1344 dab41a149bb6eeea68e8f188e88f9d64 155 SUPERFAMILY SSF55729 1 153 7.09E-34 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_1344 dab41a149bb6eeea68e8f188e88f9d64 155 Gene3D G3DSA:3.40.630.30 1 154 3.0E-39 T 10-10-2018 VF_1344 dab41a149bb6eeea68e8f188e88f9d64 155 Pfam PF13673 Acetyltransferase (GNAT) domain 28 137 1.2E-19 T 10-10-2018 IPR000182 GNAT domain VF_2146 238573326ace5e9104ec022478b27bf4 635 SUPERFAMILY SSF51445 258 618 2.95E-126 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_2146 238573326ace5e9104ec022478b27bf4 635 SUPERFAMILY SSF55545 130 257 8.77E-26 T 10-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 VF_2146 238573326ace5e9104ec022478b27bf4 635 Gene3D G3DSA:3.20.20.80 257 634 1.2E-134 T 10-10-2018 VF_2146 238573326ace5e9104ec022478b27bf4 635 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 258 605 2.3E-118 T 10-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VF_2146 238573326ace5e9104ec022478b27bf4 635 PRINTS PR00738 Glycosyl hydrolase family 20 signature 281 302 1.4E-50 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_2146 238573326ace5e9104ec022478b27bf4 635 PRINTS PR00738 Glycosyl hydrolase family 20 signature 422 435 1.4E-50 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_2146 238573326ace5e9104ec022478b27bf4 635 PRINTS PR00738 Glycosyl hydrolase family 20 signature 587 604 1.4E-50 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_2146 238573326ace5e9104ec022478b27bf4 635 PRINTS PR00738 Glycosyl hydrolase family 20 signature 252 269 1.4E-50 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_2146 238573326ace5e9104ec022478b27bf4 635 PRINTS PR00738 Glycosyl hydrolase family 20 signature 400 418 1.4E-50 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_2146 238573326ace5e9104ec022478b27bf4 635 PRINTS PR00738 Glycosyl hydrolase family 20 signature 351 368 1.4E-50 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_2146 238573326ace5e9104ec022478b27bf4 635 PRINTS PR00738 Glycosyl hydrolase family 20 signature 219 239 1.4E-50 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_2146 238573326ace5e9104ec022478b27bf4 635 PRINTS PR00738 Glycosyl hydrolase family 20 signature 569 585 1.4E-50 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_2146 238573326ace5e9104ec022478b27bf4 635 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 139 255 2.1E-18 T 10-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal VF_2146 238573326ace5e9104ec022478b27bf4 635 Gene3D G3DSA:3.30.379.10 133 256 7.2E-22 T 10-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 VF_A0821 361a40f5d3fd7b7c9e590c60c924dd08 236 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 76 1.3E-18 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VF_A0821 361a40f5d3fd7b7c9e590c60c924dd08 236 Pfam PF00043 Glutathione S-transferase, C-terminal domain 109 183 2.0E-7 T 10-10-2018 IPR004046 Glutathione S-transferase, C-terminal VF_A0821 361a40f5d3fd7b7c9e590c60c924dd08 236 Gene3D G3DSA:1.20.1050.10 86 205 1.2E-15 T 10-10-2018 VF_A0821 361a40f5d3fd7b7c9e590c60c924dd08 236 Gene3D G3DSA:3.40.30.10 1 85 1.5E-26 T 10-10-2018 VF_A0821 361a40f5d3fd7b7c9e590c60c924dd08 236 SUPERFAMILY SSF52833 1 100 2.44E-23 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_A0821 361a40f5d3fd7b7c9e590c60c924dd08 236 SUPERFAMILY SSF47616 82 195 3.9E-21 T 10-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VF_0439 a73d88cb97304a28e03079cdb6391037 384 SUPERFAMILY SSF55973 233 382 7.85E-71 T 10-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VF_0439 a73d88cb97304a28e03079cdb6391037 384 SUPERFAMILY SSF55973 3 109 1.06E-47 T 10-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VF_0439 a73d88cb97304a28e03079cdb6391037 384 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 101 1.8E-43 T 10-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VF_0439 a73d88cb97304a28e03079cdb6391037 384 Gene3D G3DSA:3.30.300.10 102 373 1.5E-177 T 10-10-2018 VF_0439 a73d88cb97304a28e03079cdb6391037 384 PIRSF PIRSF000497 1 381 3.6E-174 T 10-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VF_0439 a73d88cb97304a28e03079cdb6391037 384 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 381 58.486 T 10-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VF_0439 a73d88cb97304a28e03079cdb6391037 384 SUPERFAMILY SSF55973 111 232 6.28E-50 T 10-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VF_0439 a73d88cb97304a28e03079cdb6391037 384 Gene3D G3DSA:3.30.300.10 11 270 1.5E-177 T 10-10-2018 VF_0439 a73d88cb97304a28e03079cdb6391037 384 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 369 2.2E-69 T 10-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VF_0439 a73d88cb97304a28e03079cdb6391037 384 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 10-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VF_0439 a73d88cb97304a28e03079cdb6391037 384 Gene3D G3DSA:3.30.300.10 5 233 1.5E-177 T 10-10-2018 VF_0439 a73d88cb97304a28e03079cdb6391037 384 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 10-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VF_0439 a73d88cb97304a28e03079cdb6391037 384 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 379 1.6E-195 T 10-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VF_0439 a73d88cb97304a28e03079cdb6391037 384 Pfam PF02772 S-adenosylmethionine synthetase, central domain 114 231 3.7E-43 T 10-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VF_1040 4ead5d103f05576f2567f7c8e66a3604 353 Pfam PF01343 Peptidase family S49 165 314 2.0E-45 T 10-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 VF_1040 4ead5d103f05576f2567f7c8e66a3604 353 SUPERFAMILY SSF52096 104 303 6.87E-29 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VF_1040 4ead5d103f05576f2567f7c8e66a3604 353 Gene3D G3DSA:3.40.1750.20 206 270 4.8E-44 T 10-10-2018 VF_1040 4ead5d103f05576f2567f7c8e66a3604 353 Gene3D G3DSA:3.90.226.10 109 307 4.8E-44 T 10-10-2018 VF_1040 4ead5d103f05576f2567f7c8e66a3604 353 Pfam PF08496 Peptidase family S49 N-terminal 2 162 2.9E-55 T 10-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 VF_0339 9902bbf84a3242d7a8127a0cee6f7a71 370 Pfam PF00266 Aminotransferase class-V 11 356 4.4E-37 T 10-10-2018 IPR000192 Aminotransferase class V domain VF_0339 9902bbf84a3242d7a8127a0cee6f7a71 370 Gene3D G3DSA:3.90.1150.10 7 367 1.0E-142 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_0339 9902bbf84a3242d7a8127a0cee6f7a71 370 SUPERFAMILY SSF53383 7 370 3.99E-102 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_0339 9902bbf84a3242d7a8127a0cee6f7a71 370 Gene3D G3DSA:3.40.640.10 20 268 1.0E-142 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_0339 9902bbf84a3242d7a8127a0cee6f7a71 370 PIRSF PIRSF000524 3 370 1.2E-111 T 10-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 VF_0339 9902bbf84a3242d7a8127a0cee6f7a71 370 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 187 207 - T 10-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site VF_2108 664e1eca49afd45f948c761a3023df8c 286 SUPERFAMILY SSF50182 119 184 3.27E-17 T 10-10-2018 IPR010920 LSM domain superfamily VF_2108 664e1eca49afd45f948c761a3023df8c 286 Pfam PF00924 Mechanosensitive ion channel 76 273 1.2E-56 T 10-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VF_2108 664e1eca49afd45f948c761a3023df8c 286 Gene3D G3DSA:2.30.30.60 134 183 2.0E-21 T 10-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VF_2108 664e1eca49afd45f948c761a3023df8c 286 SUPERFAMILY SSF82689 186 283 9.94E-35 T 10-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 VF_2108 664e1eca49afd45f948c761a3023df8c 286 SUPERFAMILY SSF82861 32 117 7.72E-18 T 10-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 VF_2108 664e1eca49afd45f948c761a3023df8c 286 Pfam PF05552 Conserved TM helix 21 68 1.8E-11 T 10-10-2018 IPR008910 Conserved TM helix VF_2108 664e1eca49afd45f948c761a3023df8c 286 Gene3D G3DSA:3.30.70.100 184 278 7.0E-29 T 10-10-2018 VF_2108 664e1eca49afd45f948c761a3023df8c 286 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 148 182 - T 10-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 VF_2140 02a32a0055a72263bd26dba5aac95bee 328 Gene3D G3DSA:1.10.3720.10 88 327 3.3E-18 T 10-10-2018 IPR035906 MetI-like superfamily VF_2140 02a32a0055a72263bd26dba5aac95bee 328 SUPERFAMILY SSF161098 93 324 2.13E-15 T 10-10-2018 IPR035906 MetI-like superfamily VF_2140 02a32a0055a72263bd26dba5aac95bee 328 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 325 4.2E-40 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_2207 9367b3c7126d3763f127ae6ebefb4eba 579 Pfam PF03717 Penicillin-binding Protein dimerisation domain 69 222 1.4E-17 T 10-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 VF_2207 9367b3c7126d3763f127ae6ebefb4eba 579 Pfam PF00905 Penicillin binding protein transpeptidase domain 261 557 1.3E-71 T 10-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 VF_2207 9367b3c7126d3763f127ae6ebefb4eba 579 Gene3D G3DSA:3.30.450.330 237 561 6.6E-100 T 10-10-2018 VF_2207 9367b3c7126d3763f127ae6ebefb4eba 579 SUPERFAMILY SSF56601 188 567 6.92E-88 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VF_2207 9367b3c7126d3763f127ae6ebefb4eba 579 Gene3D G3DSA:3.40.710.10 297 479 6.6E-100 T 10-10-2018 VF_2207 9367b3c7126d3763f127ae6ebefb4eba 579 SUPERFAMILY SSF56519 63 235 9.42E-45 T 10-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 VF_2207 9367b3c7126d3763f127ae6ebefb4eba 579 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 20 572 45.235 T 10-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_2207 9367b3c7126d3763f127ae6ebefb4eba 579 Gene3D G3DSA:3.90.1310.30 60 236 4.8E-44 T 10-10-2018 VF_1593 817edd1a1cf8fc14f31a75fa1edff186 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 326 2.2E-26 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_1593 817edd1a1cf8fc14f31a75fa1edff186 331 SMART SM00382 46 239 3.8E-16 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1593 817edd1a1cf8fc14f31a75fa1edff186 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 241 308 1.7E-20 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_1593 817edd1a1cf8fc14f31a75fa1edff186 331 Pfam PF00005 ABC transporter 38 189 1.2E-33 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1593 817edd1a1cf8fc14f31a75fa1edff186 331 SUPERFAMILY SSF52540 9 261 4.6E-73 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1593 817edd1a1cf8fc14f31a75fa1edff186 331 Gene3D G3DSA:3.40.50.300 6 331 2.7E-97 T 10-10-2018 VF_1593 817edd1a1cf8fc14f31a75fa1edff186 331 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0992 10b9abfc8b4a51c668b94a57a6986599 537 Pfam PF00884 Sulfatase 36 386 3.9E-70 T 10-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VF_A0992 10b9abfc8b4a51c668b94a57a6986599 537 Gene3D G3DSA:3.40.720.10 33 457 4.1E-99 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VF_A0992 10b9abfc8b4a51c668b94a57a6986599 537 ProSitePatterns PS00149 Sulfatases signature 2. 153 163 - T 10-10-2018 IPR024607 Sulfatase, conserved site VF_A0992 10b9abfc8b4a51c668b94a57a6986599 537 ProSitePatterns PS00523 Sulfatases signature 1. 108 120 - T 10-10-2018 IPR024607 Sulfatase, conserved site VF_A0992 10b9abfc8b4a51c668b94a57a6986599 537 Gene3D G3DSA:3.30.1120.10 458 519 1.5E-14 T 10-10-2018 VF_A0992 10b9abfc8b4a51c668b94a57a6986599 537 SUPERFAMILY SSF53649 34 521 9.01E-110 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_2131 bc14e2ff183a3419dcac86dc1c97fb37 437 Gene3D G3DSA:3.10.450.350 174 410 4.0E-78 T 10-10-2018 VF_2131 bc14e2ff183a3419dcac86dc1c97fb37 437 Gene3D G3DSA:2.70.70.10 267 396 4.0E-78 T 10-10-2018 IPR011055 Duplicated hybrid motif VF_2131 bc14e2ff183a3419dcac86dc1c97fb37 437 Gene3D G3DSA:3.10.450.350 69 161 1.3E-9 T 10-10-2018 VF_2131 bc14e2ff183a3419dcac86dc1c97fb37 437 Pfam PF01551 Peptidase family M23 296 387 1.9E-29 T 10-10-2018 IPR016047 Peptidase M23 VF_2131 bc14e2ff183a3419dcac86dc1c97fb37 437 SUPERFAMILY SSF51261 144 389 1.62E-67 T 10-10-2018 IPR011055 Duplicated hybrid motif VF_2653 03f1dd43196eadd23218189383c4eccb 297 Gene3D G3DSA:3.40.50.620 5 283 1.7E-110 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_2653 03f1dd43196eadd23218189383c4eccb 297 SUPERFAMILY SSF52374 4 283 2.96E-85 T 10-10-2018 VF_2653 03f1dd43196eadd23218189383c4eccb 297 PRINTS PR00987 Glutamyl-tRNA synthetase signature 185 193 1.5E-14 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VF_2653 03f1dd43196eadd23218189383c4eccb 297 PRINTS PR00987 Glutamyl-tRNA synthetase signature 22 33 1.5E-14 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VF_2653 03f1dd43196eadd23218189383c4eccb 297 PRINTS PR00987 Glutamyl-tRNA synthetase signature 8 20 1.5E-14 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VF_2653 03f1dd43196eadd23218189383c4eccb 297 PRINTS PR00987 Glutamyl-tRNA synthetase signature 169 179 1.5E-14 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VF_2653 03f1dd43196eadd23218189383c4eccb 297 PRINTS PR00987 Glutamyl-tRNA synthetase signature 37 50 1.5E-14 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VF_2653 03f1dd43196eadd23218189383c4eccb 297 Gene3D G3DSA:3.40.50.620 80 217 1.7E-110 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_2653 03f1dd43196eadd23218189383c4eccb 297 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 8 238 1.4E-44 T 10-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 VF_2653 03f1dd43196eadd23218189383c4eccb 297 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 5 289 39.789 T 10-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 VF_2653 03f1dd43196eadd23218189383c4eccb 297 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 5 270 1.2E-111 T 10-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 VF_A1147 875c8a24e4e21c7e292128110125f6d2 265 ProSitePatterns PS01228 Hypothetical cof family signature 1. 8 19 - T 10-10-2018 VF_A1147 875c8a24e4e21c7e292128110125f6d2 265 Gene3D G3DSA:3.30.1240.10 85 190 3.8E-75 T 10-10-2018 VF_A1147 875c8a24e4e21c7e292128110125f6d2 265 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 9 260 1.5E-48 T 10-10-2018 IPR000150 Cof family GO:0016787 VF_A1147 875c8a24e4e21c7e292128110125f6d2 265 Pfam PF08282 haloacid dehalogenase-like hydrolase 9 260 3.1E-56 T 10-10-2018 VF_A1147 875c8a24e4e21c7e292128110125f6d2 265 SUPERFAMILY SSF56784 4 264 2.81E-63 T 10-10-2018 IPR036412 HAD-like superfamily VF_A1147 875c8a24e4e21c7e292128110125f6d2 265 Gene3D G3DSA:3.40.50.1000 9 260 3.8E-75 T 10-10-2018 IPR023214 HAD superfamily VF_A1147 875c8a24e4e21c7e292128110125f6d2 265 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 9 226 4.1E-20 T 10-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 VF_1790 7550eb434a909e92717566b0e2833670 398 Gene3D G3DSA:3.40.50.300 215 393 3.3E-45 T 10-10-2018 VF_1790 7550eb434a909e92717566b0e2833670 398 SUPERFAMILY SSF52540 74 360 1.45E-76 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1790 7550eb434a909e92717566b0e2833670 398 SMART SM00487 20 222 3.9E-63 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_1790 7550eb434a909e92717566b0e2833670 398 SMART SM00490 258 339 1.2E-30 T 10-10-2018 IPR001650 Helicase, C-terminal VF_1790 7550eb434a909e92717566b0e2833670 398 Pfam PF00271 Helicase conserved C-terminal domain 230 339 1.8E-27 T 10-10-2018 IPR001650 Helicase, C-terminal VF_1790 7550eb434a909e92717566b0e2833670 398 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 10-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VF_1790 7550eb434a909e92717566b0e2833670 398 Pfam PF00270 DEAD/DEAH box helicase 25 193 3.0E-51 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_1790 7550eb434a909e92717566b0e2833670 398 Gene3D G3DSA:3.40.50.300 1 211 1.5E-78 T 10-10-2018 VF_2545 10b9751f574089cf8d8703347c7a1abb 426 Gene3D G3DSA:1.10.287.730 143 169 7.7E-13 T 10-10-2018 VF_2545 10b9751f574089cf8d8703347c7a1abb 426 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 313 324 - T 10-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 VF_2545 10b9751f574089cf8d8703347c7a1abb 426 SUPERFAMILY SSF48013 1 146 1.7E-36 T 10-10-2018 IPR035926 NusB-like superfamily VF_2545 10b9751f574089cf8d8703347c7a1abb 426 Gene3D G3DSA:3.40.50.150 228 426 6.6E-71 T 10-10-2018 VF_2545 10b9751f574089cf8d8703347c7a1abb 426 Gene3D G3DSA:1.10.940.10 1 142 1.8E-45 T 10-10-2018 IPR035926 NusB-like superfamily VF_2545 10b9751f574089cf8d8703347c7a1abb 426 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 4 425 4.1E-153 T 10-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 VF_2545 10b9751f574089cf8d8703347c7a1abb 426 Gene3D G3DSA:3.30.70.1170 170 227 1.0E-23 T 10-10-2018 VF_2545 10b9751f574089cf8d8703347c7a1abb 426 Pfam PF01189 16S rRNA methyltransferase RsmB/F 238 424 1.1E-69 T 10-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 VF_2545 10b9751f574089cf8d8703347c7a1abb 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 408 425 1.9E-30 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VF_2545 10b9751f574089cf8d8703347c7a1abb 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 364 380 1.9E-30 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VF_2545 10b9751f574089cf8d8703347c7a1abb 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 219 233 1.9E-30 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VF_2545 10b9751f574089cf8d8703347c7a1abb 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 314 326 1.9E-30 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VF_2545 10b9751f574089cf8d8703347c7a1abb 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 248 258 1.9E-30 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VF_2545 10b9751f574089cf8d8703347c7a1abb 426 SUPERFAMILY SSF53335 142 425 9.43E-79 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_2545 10b9751f574089cf8d8703347c7a1abb 426 Pfam PF01029 NusB family 1 123 6.2E-26 T 10-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 VF_0037 defa9cdde2c5311cf88093e138fc2c22 815 Gene3D G3DSA:3.30.379.10 27 163 1.6E-21 T 10-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 VF_0037 defa9cdde2c5311cf88093e138fc2c22 815 Gene3D G3DSA:3.20.20.80 510 644 4.7E-15 T 10-10-2018 VF_0037 defa9cdde2c5311cf88093e138fc2c22 815 SUPERFAMILY SSF51445 165 617 1.89E-103 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_0037 defa9cdde2c5311cf88093e138fc2c22 815 PRINTS PR00738 Glycosyl hydrolase family 20 signature 312 325 1.2E-40 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_0037 defa9cdde2c5311cf88093e138fc2c22 815 PRINTS PR00738 Glycosyl hydrolase family 20 signature 240 257 1.2E-40 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_0037 defa9cdde2c5311cf88093e138fc2c22 815 PRINTS PR00738 Glycosyl hydrolase family 20 signature 188 209 1.2E-40 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_0037 defa9cdde2c5311cf88093e138fc2c22 815 PRINTS PR00738 Glycosyl hydrolase family 20 signature 124 144 1.2E-40 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_0037 defa9cdde2c5311cf88093e138fc2c22 815 PRINTS PR00738 Glycosyl hydrolase family 20 signature 159 176 1.2E-40 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_0037 defa9cdde2c5311cf88093e138fc2c22 815 PRINTS PR00738 Glycosyl hydrolase family 20 signature 290 308 1.2E-40 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_0037 defa9cdde2c5311cf88093e138fc2c22 815 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 28 161 8.3E-13 T 10-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal VF_0037 defa9cdde2c5311cf88093e138fc2c22 815 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 165 604 7.6E-110 T 10-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VF_0037 defa9cdde2c5311cf88093e138fc2c22 815 Gene3D G3DSA:3.20.20.80 164 452 3.6E-91 T 10-10-2018 VF_0037 defa9cdde2c5311cf88093e138fc2c22 815 SUPERFAMILY SSF55545 30 164 3.44E-26 T 10-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 VF_2480 8f7dd72e16bceb9349cd3f7cb2704a02 405 Pfam PF00563 EAL domain 73 192 2.1E-10 T 10-10-2018 IPR001633 EAL domain VF_2480 8f7dd72e16bceb9349cd3f7cb2704a02 405 Gene3D G3DSA:1.10.3210.10 203 384 3.1E-24 T 10-10-2018 VF_2480 8f7dd72e16bceb9349cd3f7cb2704a02 405 SUPERFAMILY SSF141868 4 199 1.44E-25 T 10-10-2018 IPR035919 EAL domain superfamily VF_2480 8f7dd72e16bceb9349cd3f7cb2704a02 405 PIRSF PIRSF003180 1 405 8.7E-159 T 10-10-2018 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing VF_2480 8f7dd72e16bceb9349cd3f7cb2704a02 405 Pfam PF08668 HDOD domain 208 322 6.2E-17 T 10-10-2018 IPR013976 Metal-dependent hydrolase HDOD VF_2480 8f7dd72e16bceb9349cd3f7cb2704a02 405 SUPERFAMILY SSF109604 183 402 8.79E-39 T 10-10-2018 VF_2480 8f7dd72e16bceb9349cd3f7cb2704a02 405 Gene3D G3DSA:3.20.20.450 2 121 1.4E-6 T 10-10-2018 IPR035919 EAL domain superfamily VF_2480 8f7dd72e16bceb9349cd3f7cb2704a02 405 Gene3D G3DSA:3.20.20.450 156 202 1.6E-6 T 10-10-2018 IPR035919 EAL domain superfamily VF_2172 d03330d8e3bc15cecaaccfb88e15904e 305 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_2172 d03330d8e3bc15cecaaccfb88e15904e 305 Pfam PF00005 ABC transporter 20 164 1.3E-34 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_2172 d03330d8e3bc15cecaaccfb88e15904e 305 Gene3D G3DSA:3.40.50.300 1 238 4.0E-68 T 10-10-2018 VF_2172 d03330d8e3bc15cecaaccfb88e15904e 305 SMART SM00382 29 211 1.7E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2172 d03330d8e3bc15cecaaccfb88e15904e 305 SUPERFAMILY SSF52540 3 232 3.13E-64 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 Pfam PF07517 SecA DEAD-like domain 7 402 2.2E-132 T 10-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 Gene3D G3DSA:1.10.3060.10 621 833 1.1E-77 T 10-10-2018 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 SUPERFAMILY SSF52540 416 618 3.74E-57 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 ProSitePatterns PS01312 SecA family signature. 500 515 - T 10-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 PRINTS PR00906 SecA protein signature 101 115 3.1E-72 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 PRINTS PR00906 SecA protein signature 117 127 3.1E-72 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 PRINTS PR00906 SecA protein signature 170 190 3.1E-72 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 PRINTS PR00906 SecA protein signature 63 87 3.1E-72 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 PRINTS PR00906 SecA protein signature 376 393 3.1E-72 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 PRINTS PR00906 SecA protein signature 413 426 3.1E-72 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 PRINTS PR00906 SecA protein signature 339 361 3.1E-72 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 19.891 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 816 0.0 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 SMART SM00957 6 402 0.0 T 10-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 Pfam PF01043 SecA preprotein cross-linking domain 232 358 1.2E-39 T 10-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 SUPERFAMILY SSF81886 620 896 2.62E-82 T 10-10-2018 IPR036266 SecA, Wing/Scaffold superfamily VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 Gene3D G3DSA:3.40.50.300 417 620 1.5E-88 T 10-10-2018 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 SUPERFAMILY SSF52540 5 415 1.32E-84 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 SMART SM00958 228 358 7.3E-83 T 10-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 Gene3D G3DSA:3.90.1440.10 229 368 5.3E-177 T 10-10-2018 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 Pfam PF02810 SEC-C motif 888 906 3.3E-10 T 10-10-2018 IPR004027 SEC-C motif VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 SUPERFAMILY SSF81767 227 368 2.22E-44 T 10-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 Gene3D G3DSA:3.40.50.300 22 415 5.3E-177 T 10-10-2018 VF_2193 0b542fddbc88a4724559d24ce5ab0f3a 907 Pfam PF07516 SecA Wing and Scaffold domain 617 829 1.7E-66 T 10-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 SMART SM00448 5 116 3.6E-33 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 Gene3D G3DSA:3.40.50.2300 3 131 2.2E-34 T 10-10-2018 VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 Pfam PF00158 Sigma-54 interaction domain 145 310 2.4E-68 T 10-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 Gene3D G3DSA:3.40.50.300 132 315 2.7E-65 T 10-10-2018 VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 SUPERFAMILY SSF52540 144 386 3.66E-69 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 357 366 - T 10-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 SUPERFAMILY SSF52172 5 188 8.82E-44 T 10-10-2018 IPR011006 CheY-like superfamily VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 SUPERFAMILY SSF46689 429 474 8.19E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 Pfam PF00072 Response regulator receiver domain 8 116 3.3E-28 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 Gene3D G3DSA:1.10.8.60 316 395 4.6E-23 T 10-10-2018 VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 SMART SM00382 164 307 1.0E-7 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 Gene3D G3DSA:1.10.10.60 427 471 5.1E-11 T 10-10-2018 VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 Pfam PF02954 Bacterial regulatory protein, Fis family 433 471 6.3E-12 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 10-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 439 456 6.1E-5 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_0937 a0ab1de7f943ddd8e0dd71d572847d2e 476 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 456 476 6.1E-5 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_0865 2f51371f1bb48960665e1b976d0d48d6 515 SUPERFAMILY SSF56024 284 476 3.34E-26 T 10-10-2018 VF_0865 2f51371f1bb48960665e1b976d0d48d6 515 SUPERFAMILY SSF56024 44 252 5.83E-45 T 10-10-2018 VF_0865 2f51371f1bb48960665e1b976d0d48d6 515 Gene3D G3DSA:3.30.870.10 50 253 1.1E-41 T 10-10-2018 VF_0865 2f51371f1bb48960665e1b976d0d48d6 515 SMART SM00155 410 437 1.6E-4 T 10-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VF_0865 2f51371f1bb48960665e1b976d0d48d6 515 SMART SM00155 167 194 0.022 T 10-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VF_0865 2f51371f1bb48960665e1b976d0d48d6 515 Pfam PF13091 PLD-like domain 76 226 8.9E-18 T 10-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VF_0865 2f51371f1bb48960665e1b976d0d48d6 515 Pfam PF13091 PLD-like domain 319 462 1.5E-16 T 10-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VF_0865 2f51371f1bb48960665e1b976d0d48d6 515 Gene3D G3DSA:3.30.870.10 297 480 1.0E-29 T 10-10-2018 VF_A0041 be522695d803f91f7c8f329ec7208e8b 202 SMART SM00448 2 112 3.7E-25 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0041 be522695d803f91f7c8f329ec7208e8b 202 Gene3D G3DSA:3.40.50.12740 2 201 6.2E-54 T 10-10-2018 VF_A0041 be522695d803f91f7c8f329ec7208e8b 202 SUPERFAMILY SSF52172 1 124 1.99E-26 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0041 be522695d803f91f7c8f329ec7208e8b 202 SUPERFAMILY SSF46894 125 199 4.76E-19 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_A0041 be522695d803f91f7c8f329ec7208e8b 202 SMART SM00421 140 197 9.2E-20 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0041 be522695d803f91f7c8f329ec7208e8b 202 Pfam PF00072 Response regulator receiver domain 4 113 2.3E-22 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0041 be522695d803f91f7c8f329ec7208e8b 202 Pfam PF00196 Bacterial regulatory proteins, luxR family 142 196 2.9E-19 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0041 be522695d803f91f7c8f329ec7208e8b 202 ProSitePatterns PS00622 LuxR-type HTH domain signature. 157 184 - T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0041 be522695d803f91f7c8f329ec7208e8b 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 173 3.4E-11 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0041 be522695d803f91f7c8f329ec7208e8b 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 143 157 3.4E-11 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0041 be522695d803f91f7c8f329ec7208e8b 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 185 3.4E-11 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A1032 98e5c9f23622f2a961be9e9261acc043 251 SUPERFAMILY SSF51161 38 232 1.66E-31 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_A1032 98e5c9f23622f2a961be9e9261acc043 251 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 190 218 - T 10-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VF_A1032 98e5c9f23622f2a961be9e9261acc043 251 Gene3D G3DSA:2.160.10.10 86 250 5.0E-35 T 10-10-2018 VF_A1032 98e5c9f23622f2a961be9e9261acc043 251 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 182 216 3.5E-7 T 10-10-2018 IPR001451 Hexapeptide repeat VF_1480 b1c7d6f036e1157cc9c04c551b0c4627 190 Pfam PF04264 YceI-like domain 25 188 1.6E-14 T 10-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like VF_1480 b1c7d6f036e1157cc9c04c551b0c4627 190 Gene3D G3DSA:2.40.128.110 21 190 9.3E-43 T 10-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily VF_1480 b1c7d6f036e1157cc9c04c551b0c4627 190 SUPERFAMILY SSF101874 24 190 2.62E-23 T 10-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily VF_1480 b1c7d6f036e1157cc9c04c551b0c4627 190 SMART SM00867 24 189 4.3E-16 T 10-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like VF_1480 b1c7d6f036e1157cc9c04c551b0c4627 190 PIRSF PIRSF029811 1 190 9.6E-56 T 10-10-2018 IPR027016 Uncharacterised protein with YceI domain VF_0101 52871947afc0a01c31819b694c1761d0 144 SUPERFAMILY SSF69500 2 143 4.45E-54 T 10-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily VF_0101 52871947afc0a01c31819b694c1761d0 144 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 144 32.966 T 10-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 VF_0101 52871947afc0a01c31819b694c1761d0 144 Gene3D G3DSA:3.50.80.10 1 144 1.5E-54 T 10-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily VF_0101 52871947afc0a01c31819b694c1761d0 144 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 142 6.7E-52 T 10-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 VF_0101 52871947afc0a01c31819b694c1761d0 144 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 2 144 4.5E-65 T 10-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 VF_A1169 fa595af57ec7c9746ffb2ce3a6450eea 709 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 23 705 38.416 T 10-10-2018 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 VF_A1169 fa595af57ec7c9746ffb2ce3a6450eea 709 Gene3D G3DSA:3.40.630.30 359 568 9.6E-58 T 10-10-2018 VF_A1169 fa595af57ec7c9746ffb2ce3a6450eea 709 Pfam PF05127 Helicase 196 366 1.7E-54 T 10-10-2018 IPR007807 Helicase domain Reactome: R-HSA-6790901 VF_A1169 fa595af57ec7c9746ffb2ce3a6450eea 709 Gene3D G3DSA:3.40.50.12320 194 356 6.0E-41 T 10-10-2018 VF_A1169 fa595af57ec7c9746ffb2ce3a6450eea 709 SUPERFAMILY SSF55729 381 549 4.79E-7 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A1169 fa595af57ec7c9746ffb2ce3a6450eea 709 Pfam PF08351 Domain of unknown function (DUF1726) 74 127 2.0E-6 T 10-10-2018 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal Reactome: R-HSA-6790901 VF_A1169 fa595af57ec7c9746ffb2ce3a6450eea 709 Gene3D G3DSA:3.40.50.11040 9 175 1.5E-10 T 10-10-2018 VF_A1169 fa595af57ec7c9746ffb2ce3a6450eea 709 Pfam PF13718 GNAT acetyltransferase 2 402 519 4.5E-22 T 10-10-2018 IPR000182 GNAT domain VF_A1169 fa595af57ec7c9746ffb2ce3a6450eea 709 SUPERFAMILY SSF52540 168 309 8.11E-11 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0962 4fffd496c6f67774796ec4f7a222690a 450 Pfam PF04052 TolB amino-terminal domain 24 126 4.7E-35 T 10-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 VF_0962 4fffd496c6f67774796ec4f7a222690a 450 SUPERFAMILY SSF69304 175 448 1.03E-56 T 10-10-2018 VF_0962 4fffd496c6f67774796ec4f7a222690a 450 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 6 446 50.547 T 10-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 VF_0962 4fffd496c6f67774796ec4f7a222690a 450 SUPERFAMILY SSF52964 29 181 5.49E-41 T 10-10-2018 VF_0962 4fffd496c6f67774796ec4f7a222690a 450 Pfam PF07676 WD40-like Beta Propeller Repeat 261 292 6.3E-7 T 10-10-2018 IPR011659 WD40-like Beta Propeller VF_0962 4fffd496c6f67774796ec4f7a222690a 450 Pfam PF07676 WD40-like Beta Propeller Repeat 301 336 2.6E-12 T 10-10-2018 IPR011659 WD40-like Beta Propeller VF_0962 4fffd496c6f67774796ec4f7a222690a 450 Pfam PF07676 WD40-like Beta Propeller Repeat 214 248 3.1E-9 T 10-10-2018 IPR011659 WD40-like Beta Propeller VF_0962 4fffd496c6f67774796ec4f7a222690a 450 Gene3D G3DSA:2.120.10.30 185 450 3.5E-96 T 10-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like VF_0962 4fffd496c6f67774796ec4f7a222690a 450 Gene3D G3DSA:3.40.50.10070 23 183 7.1E-50 T 10-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 VF_0962 4fffd496c6f67774796ec4f7a222690a 450 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 16 447 3.4E-167 T 10-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 VF_1775 9c96174ddfdb2469265749bd717cc345 742 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 1 742 0.0 T 10-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 VF_1775 9c96174ddfdb2469265749bd717cc345 742 PIRSF PIRSF009407 1 742 0.0 T 10-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 VF_1775 9c96174ddfdb2469265749bd717cc345 742 SUPERFAMILY SSF53659 5 741 0.0 T 10-10-2018 VF_1775 9c96174ddfdb2469265749bd717cc345 742 Pfam PF03971 Monomeric isocitrate dehydrogenase 7 739 0.0 T 10-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 VF_1775 9c96174ddfdb2469265749bd717cc345 742 Gene3D G3DSA:3.40.718.10 414 650 4.2E-8 T 10-10-2018 VF_1890 b1048e543907943b5a3cf96939d52a41 668 SUPERFAMILY SSF50249 317 398 1.13E-28 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1890 b1048e543907943b5a3cf96939d52a41 668 SUPERFAMILY SSF52113 594 667 3.36E-18 T 10-10-2018 IPR036420 BRCT domain superfamily VF_1890 b1048e543907943b5a3cf96939d52a41 668 Gene3D G3DSA:1.10.150.20 431 504 9.5E-29 T 10-10-2018 VF_1890 b1048e543907943b5a3cf96939d52a41 668 SUPERFAMILY SSF56091 3 315 4.97E-122 T 10-10-2018 VF_1890 b1048e543907943b5a3cf96939d52a41 668 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 330 345 - T 10-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site VF_1890 b1048e543907943b5a3cf96939d52a41 668 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 593 667 1.8E-12 T 10-10-2018 IPR001357 BRCT domain VF_1890 b1048e543907943b5a3cf96939d52a41 668 Gene3D G3DSA:3.30.470.90 68 316 5.0E-101 T 10-10-2018 VF_1890 b1048e543907943b5a3cf96939d52a41 668 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 114 143 - T 10-10-2018 IPR018239 NAD-dependent DNA ligase, active site VF_1890 b1048e543907943b5a3cf96939d52a41 668 Gene3D G3DSA:1.10.150.20 505 585 5.1E-29 T 10-10-2018 VF_1890 b1048e543907943b5a3cf96939d52a41 668 Pfam PF14520 Helix-hairpin-helix domain 445 500 6.6E-6 T 10-10-2018 VF_1890 b1048e543907943b5a3cf96939d52a41 668 SMART SM00278 479 498 8.4 T 10-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VF_1890 b1048e543907943b5a3cf96939d52a41 668 SMART SM00278 514 530 2000.0 T 10-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VF_1890 b1048e543907943b5a3cf96939d52a41 668 SMART SM00278 445 464 100.0 T 10-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VF_1890 b1048e543907943b5a3cf96939d52a41 668 SMART SM00278 543 562 120.0 T 10-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VF_1890 b1048e543907943b5a3cf96939d52a41 668 Pfam PF12826 Helix-hairpin-helix motif 509 572 1.7E-22 T 10-10-2018 VF_1890 b1048e543907943b5a3cf96939d52a41 668 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 406 433 8.5E-10 T 10-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 VF_1890 b1048e543907943b5a3cf96939d52a41 668 SUPERFAMILY SSF47781 402 583 6.67E-59 T 10-10-2018 IPR010994 RuvA domain 2-like VF_1890 b1048e543907943b5a3cf96939d52a41 668 SMART SM00292 593 668 1.2E-10 T 10-10-2018 IPR001357 BRCT domain VF_1890 b1048e543907943b5a3cf96939d52a41 668 PIRSF PIRSF001604 1 668 8.7E-250 T 10-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 VF_1890 b1048e543907943b5a3cf96939d52a41 668 Gene3D G3DSA:3.40.50.10190 590 668 3.0E-25 T 10-10-2018 IPR036420 BRCT domain superfamily VF_1890 b1048e543907943b5a3cf96939d52a41 668 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 10 663 1.2E-262 T 10-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 VF_1890 b1048e543907943b5a3cf96939d52a41 668 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 2 317 4.4E-134 T 10-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 VF_1890 b1048e543907943b5a3cf96939d52a41 668 SMART SM00532 2 447 1.5E-273 T 10-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 VF_1890 b1048e543907943b5a3cf96939d52a41 668 Hamap MF_01588 DNA ligase [ligA]. 1 667 52.982 T 10-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 VF_1890 b1048e543907943b5a3cf96939d52a41 668 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 321 397 9.4E-36 T 10-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 VF_1890 b1048e543907943b5a3cf96939d52a41 668 Gene3D G3DSA:1.10.287.610 1 67 2.8E-26 T 10-10-2018 VF_1890 b1048e543907943b5a3cf96939d52a41 668 Gene3D G3DSA:2.40.50.140 317 389 1.1E-34 T 10-10-2018 VF_1890 b1048e543907943b5a3cf96939d52a41 668 Gene3D G3DSA:2.20.70.80 390 430 4.5E-15 T 10-10-2018 VF_1639 21702623d05db089ee290aba7f7729cb 490 SUPERFAMILY SSF103190 143 246 4.32E-7 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_1639 21702623d05db089ee290aba7f7729cb 490 SMART SM00267 324 490 5.8E-41 T 10-10-2018 IPR000160 GGDEF domain VF_1639 21702623d05db089ee290aba7f7729cb 490 Gene3D G3DSA:3.30.70.270 323 490 2.0E-45 T 10-10-2018 VF_1639 21702623d05db089ee290aba7f7729cb 490 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 334 488 2.1E-41 T 10-10-2018 IPR000160 GGDEF domain VF_1639 21702623d05db089ee290aba7f7729cb 490 Pfam PF00990 Diguanylate cyclase, GGDEF domain 335 486 3.9E-37 T 10-10-2018 IPR000160 GGDEF domain VF_1639 21702623d05db089ee290aba7f7729cb 490 SUPERFAMILY SSF55073 340 489 1.33E-37 T 10-10-2018 IPR029787 Nucleotide cyclase VF_1639 21702623d05db089ee290aba7f7729cb 490 Gene3D G3DSA:3.30.450.20 125 237 2.3E-7 T 10-10-2018 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 PIRSF PIRSF000770 12 289 2.8E-32 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 SUPERFAMILY SSF88659 199 287 6.54E-16 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 51 279 3.7E-38 T 10-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 PRINTS PR00046 Major sigma-70 factor signature 252 267 2.4E-23 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 PRINTS PR00046 Major sigma-70 factor signature 83 96 2.4E-23 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 PRINTS PR00046 Major sigma-70 factor signature 107 115 2.4E-23 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 PRINTS PR00046 Major sigma-70 factor signature 267 278 2.4E-23 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 PRINTS PR00046 Major sigma-70 factor signature 231 243 2.4E-23 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 SUPERFAMILY SSF88946 17 129 1.88E-39 T 10-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 Pfam PF04545 Sigma-70, region 4 227 278 5.9E-11 T 10-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 Gene3D G3DSA:1.10.601.10 11 128 3.3E-37 T 10-10-2018 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 Pfam PF00140 Sigma-70 factor, region 1.2 18 49 4.8E-11 T 10-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 252 278 - T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 83 96 - T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 Gene3D G3DSA:1.10.10.10 210 288 4.1E-17 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 Gene3D G3DSA:1.10.10.10 129 179 2.5E-7 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 Pfam PF04542 Sigma-70 region 2 56 127 1.7E-14 T 10-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VF_A1015 6df7f866ef0e532c4cd38adc43f59e5d 294 SUPERFAMILY SSF88659 127 173 1.18E-7 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_1824 b90d1645dac55562d74b0eb23bd43d81 204 Gene3D G3DSA:3.40.50.300 1 199 2.9E-43 T 10-10-2018 VF_1824 b90d1645dac55562d74b0eb23bd43d81 204 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1824 b90d1645dac55562d74b0eb23bd43d81 204 Pfam PF00005 ABC transporter 18 157 1.1E-30 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1824 b90d1645dac55562d74b0eb23bd43d81 204 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 201 3.7E-77 T 10-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 VF_1824 b90d1645dac55562d74b0eb23bd43d81 204 SMART SM00382 26 204 4.8E-4 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1824 b90d1645dac55562d74b0eb23bd43d81 204 SUPERFAMILY SSF52540 2 192 1.78E-42 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0533 8be3ae812395891f1111e33b671ef0e7 558 Gene3D G3DSA:3.40.50.12780 3 428 4.9E-85 T 10-10-2018 VF_0533 8be3ae812395891f1111e33b671ef0e7 558 Pfam PF00501 AMP-binding enzyme 21 438 4.9E-88 T 10-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VF_0533 8be3ae812395891f1111e33b671ef0e7 558 ProSitePatterns PS00455 Putative AMP-binding domain signature. 180 191 - T 10-10-2018 IPR020845 AMP-binding, conserved site VF_0533 8be3ae812395891f1111e33b671ef0e7 558 SUPERFAMILY SSF56801 12 545 1.7E-108 T 10-10-2018 VF_0644 dff300a2b36ac0797616ca9e8b376d05 280 Pfam PF00756 Putative esterase 23 272 1.5E-60 T 10-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 VF_0644 dff300a2b36ac0797616ca9e8b376d05 280 SUPERFAMILY SSF53474 3 279 3.35E-90 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_0644 dff300a2b36ac0797616ca9e8b376d05 280 Gene3D G3DSA:3.40.50.1820 3 280 8.4E-93 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_0644 dff300a2b36ac0797616ca9e8b376d05 280 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 5 278 1.8E-112 T 10-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 VF_0674 e25c8077e54cd4c44308d0722b2e8a56 118 Pfam PF00699 Urease beta subunit 3 101 2.8E-43 T 10-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0674 e25c8077e54cd4c44308d0722b2e8a56 118 Gene3D G3DSA:2.10.150.10 1 117 7.3E-47 T 10-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0674 e25c8077e54cd4c44308d0722b2e8a56 118 Hamap MF_01954 Urease subunit beta [ureB]. 1 103 30.719 T 10-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0674 e25c8077e54cd4c44308d0722b2e8a56 118 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 104 1.1E-43 T 10-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0674 e25c8077e54cd4c44308d0722b2e8a56 118 SUPERFAMILY SSF51278 1 110 3.66E-46 T 10-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0425 0189171ca42d28c16e5df08cc728b72e 198 Gene3D G3DSA:3.90.950.10 1 197 1.1E-83 T 10-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VF_0425 0189171ca42d28c16e5df08cc728b72e 198 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 194 2.2E-67 T 10-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 VF_0425 0189171ca42d28c16e5df08cc728b72e 198 SUPERFAMILY SSF52972 1 196 2.12E-75 T 10-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VF_0425 0189171ca42d28c16e5df08cc728b72e 198 Hamap MF_01405 dITP/XTP pyrophosphatase. 2 196 51.56 T 10-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 VF_0425 0189171ca42d28c16e5df08cc728b72e 198 Pfam PF01725 Ham1 family 4 191 6.1E-60 T 10-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 VF_A1076 ad7ba503e8cbe2d74d5dda9710f23d94 237 Gene3D G3DSA:3.20.20.450 11 236 9.3E-37 T 10-10-2018 IPR035919 EAL domain superfamily VF_A1076 ad7ba503e8cbe2d74d5dda9710f23d94 237 Pfam PF00563 EAL domain 15 233 1.1E-30 T 10-10-2018 IPR001633 EAL domain VF_A1076 ad7ba503e8cbe2d74d5dda9710f23d94 237 SUPERFAMILY SSF141868 14 235 8.11E-40 T 10-10-2018 IPR035919 EAL domain superfamily VF_A1076 ad7ba503e8cbe2d74d5dda9710f23d94 237 SMART SM00052 1 236 1.3E-10 T 10-10-2018 IPR001633 EAL domain VF_2139 900699acfa2d056eb389c431d41a777b 557 PIRSF PIRSF002741 4 540 1.9E-65 T 10-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VF_2139 900699acfa2d056eb389c431d41a777b 557 Gene3D G3DSA:3.40.190.10 44 540 5.1E-192 T 10-10-2018 VF_2139 900699acfa2d056eb389c431d41a777b 557 SUPERFAMILY SSF53850 33 540 4.89E-104 T 10-10-2018 VF_2139 900699acfa2d056eb389c431d41a777b 557 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 81 103 - T 10-10-2018 IPR023765 Solute-binding protein family 5, conserved site VF_2139 900699acfa2d056eb389c431d41a777b 557 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 75 452 2.5E-73 T 10-10-2018 IPR000914 Solute-binding protein family 5 domain VF_2139 900699acfa2d056eb389c431d41a777b 557 Gene3D G3DSA:3.10.105.10 269 516 5.1E-192 T 10-10-2018 VF_2139 900699acfa2d056eb389c431d41a777b 557 Gene3D G3DSA:3.90.76.10 63 169 5.1E-192 T 10-10-2018 VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 SUPERFAMILY SSF53187 168 392 9.73E-51 T 10-10-2018 VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 SMART SM00257 481 524 6.3E-14 T 10-10-2018 IPR018392 LysM domain VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 SMART SM00257 531 574 2.1E-15 T 10-10-2018 IPR018392 LysM domain VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 SMART SM00257 410 453 5.5E-16 T 10-10-2018 IPR018392 LysM domain VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 SMART SM00646 230 389 1.9E-65 T 10-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 Gene3D G3DSA:2.60.40.3500 19 137 2.4E-26 T 10-10-2018 VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 SUPERFAMILY SSF54106 410 453 4.05E-10 T 10-10-2018 VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 170 389 2.9E-48 T 10-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 SUPERFAMILY SSF54106 531 574 1.96E-10 T 10-10-2018 VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 Pfam PF01476 LysM domain 411 453 1.3E-13 T 10-10-2018 IPR018392 LysM domain VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 Pfam PF01476 LysM domain 532 574 1.6E-13 T 10-10-2018 IPR018392 LysM domain VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 Pfam PF01476 LysM domain 482 523 3.7E-12 T 10-10-2018 IPR018392 LysM domain VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 SUPERFAMILY SSF54106 480 523 1.31E-9 T 10-10-2018 VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 Gene3D G3DSA:3.40.630.40 157 399 5.0E-68 T 10-10-2018 VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 Pfam PF11741 AMIN domain 33 135 3.0E-17 T 10-10-2018 IPR021731 AMIN domain VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 Gene3D G3DSA:3.10.350.10 406 458 1.1E-15 T 10-10-2018 IPR036779 LysM domain superfamily VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 Gene3D G3DSA:3.10.350.10 529 576 4.9E-16 T 10-10-2018 IPR036779 LysM domain superfamily VF_2326 0ccea717f5fa3752dfdd4ce7f0ace560 576 Gene3D G3DSA:3.10.350.10 478 526 3.5E-15 T 10-10-2018 IPR036779 LysM domain superfamily VF_A0793 26cb85558178a614bd56ef8a1b1a6c73 300 SUPERFAMILY SSF53850 92 295 1.39E-22 T 10-10-2018 VF_A0793 26cb85558178a614bd56ef8a1b1a6c73 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 1.9E-14 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0793 26cb85558178a614bd56ef8a1b1a6c73 300 Gene3D G3DSA:1.10.10.10 8 92 1.3E-19 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0793 26cb85558178a614bd56ef8a1b1a6c73 300 Gene3D G3DSA:3.40.190.290 95 296 1.4E-29 T 10-10-2018 VF_A0793 26cb85558178a614bd56ef8a1b1a6c73 300 SUPERFAMILY SSF46785 3 86 4.76E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0793 26cb85558178a614bd56ef8a1b1a6c73 300 Pfam PF03466 LysR substrate binding domain 93 295 6.5E-19 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 SUPERFAMILY SSF52540 7 272 1.56E-12 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 ProSitePatterns PS00622 LuxR-type HTH domain signature. 853 880 - T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 Gene3D G3DSA:3.40.50.300 3 172 3.4E-6 T 10-10-2018 VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 SMART SM00421 836 893 1.8E-18 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 SUPERFAMILY SSF48452 442 804 6.45E-153 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 853 869 1.0E-9 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 869 881 1.0E-9 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 839 853 1.0E-9 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 Gene3D G3DSA:1.10.10.10 828 900 1.3E-17 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 SMART SM00028 612 645 18.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 SMART SM00028 573 606 360.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 SMART SM00028 452 485 130.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 SMART SM00028 691 724 19.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 Pfam PF07721 Tetratricopeptide repeat 613 633 0.11 T 10-10-2018 IPR011717 Tetratricopeptide TPR-4 GO:0042802 VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 Pfam PF00196 Bacterial regulatory proteins, luxR family 838 893 5.3E-19 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 SUPERFAMILY SSF46894 831 894 3.1E-16 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_A0811 728f091437ed7a2491fdc1f86e09cce3 901 Gene3D G3DSA:1.25.40.10 441 810 6.8E-76 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 SUPERFAMILY SSF116726 391 450 1.7E-6 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 SUPERFAMILY SSF51735 1 150 2.39E-35 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 5.1E-32 T 10-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 5.1E-32 T 10-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 5.1E-32 T 10-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 5.1E-32 T 10-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 5.1E-32 T 10-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 Gene3D G3DSA:3.40.50.720 2 139 6.4E-51 T 10-10-2018 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 Gene3D G3DSA:3.40.50.720 233 366 2.4E-36 T 10-10-2018 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 Gene3D G3DSA:3.30.70.1450 367 458 1.1E-28 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 Pfam PF02254 TrkA-N domain 3 111 3.3E-29 T 10-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 Pfam PF02254 TrkA-N domain 235 350 9.2E-25 T 10-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 SUPERFAMILY SSF51735 232 376 3.28E-32 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 Gene3D G3DSA:3.30.70.1450 140 232 1.1E-21 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 SUPERFAMILY SSF116726 149 226 1.18E-9 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 Pfam PF02080 TrkA-C domain 391 451 7.9E-9 T 10-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VF_2546 3b15f6052b3ca67f9188dd450f40b10a 458 Pfam PF02080 TrkA-C domain 156 225 2.1E-11 T 10-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VF_0518 e1d1967678ac25e363001f853fb114c4 290 Pfam PF00482 Type II secretion system (T2SS), protein F 152 278 2.8E-16 T 10-10-2018 IPR018076 Type II secretion system F domain VF_A0031 2a3e89125d2569692c47c2c4f4bee996 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 9.6E-18 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0031 2a3e89125d2569692c47c2c4f4bee996 294 Pfam PF03466 LysR substrate binding domain 89 292 7.6E-45 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0031 2a3e89125d2569692c47c2c4f4bee996 294 SUPERFAMILY SSF53850 90 293 2.33E-47 T 10-10-2018 VF_A0031 2a3e89125d2569692c47c2c4f4bee996 294 Gene3D G3DSA:1.10.10.10 3 88 9.5E-26 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0031 2a3e89125d2569692c47c2c4f4bee996 294 Gene3D G3DSA:3.40.190.10 163 263 8.3E-72 T 10-10-2018 VF_A0031 2a3e89125d2569692c47c2c4f4bee996 294 Gene3D G3DSA:3.40.190.10 91 289 8.3E-72 T 10-10-2018 VF_A0031 2a3e89125d2569692c47c2c4f4bee996 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.5E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0031 2a3e89125d2569692c47c2c4f4bee996 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.5E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0031 2a3e89125d2569692c47c2c4f4bee996 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.5E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0031 2a3e89125d2569692c47c2c4f4bee996 294 SUPERFAMILY SSF46785 4 112 1.09E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1528 1ae0a09d43d37452325a0a24fb1e6069 229 Pfam PF10979 Protein of unknown function (DUF2786) 7 44 3.6E-11 T 10-10-2018 IPR024498 Domain of unknown function DUF2786 VF_1528 1ae0a09d43d37452325a0a24fb1e6069 229 PIRSF PIRSF028111 2 229 1.2E-79 T 10-10-2018 IPR016868 Bacteriophage B3, Orf5 VF_2222 19c3c366c5c54eaff66820e5b543a325 142 Pfam PF00572 Ribosomal protein L13 15 138 4.0E-57 T 10-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 VF_2222 19c3c366c5c54eaff66820e5b543a325 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 10-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 VF_2222 19c3c366c5c54eaff66820e5b543a325 142 Gene3D G3DSA:3.90.1180.10 1 142 1.6E-63 T 10-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 VF_2222 19c3c366c5c54eaff66820e5b543a325 142 PIRSF PIRSF002181 1 142 9.0E-52 T 10-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 VF_2222 19c3c366c5c54eaff66820e5b543a325 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 1.3E-65 T 10-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2222 19c3c366c5c54eaff66820e5b543a325 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.478 T 10-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 VF_2222 19c3c366c5c54eaff66820e5b543a325 142 SUPERFAMILY SSF52161 1 140 1.44E-59 T 10-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 VF_0659 8e5263036dd0c98ce1da01bb765080c9 146 Gene3D G3DSA:2.40.70.10 3 133 5.0E-37 T 10-10-2018 IPR021109 Aspartic peptidase domain superfamily VF_0659 8e5263036dd0c98ce1da01bb765080c9 146 SUPERFAMILY SSF50630 6 140 1.37E-47 T 10-10-2018 IPR021109 Aspartic peptidase domain superfamily VF_0659 8e5263036dd0c98ce1da01bb765080c9 146 Pfam PF05618 Putative ATP-dependant zinc protease 6 141 1.1E-44 T 10-10-2018 VF_2357 98cea41ffe8412c6e056b84cacb48b9e 266 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 11 224 1.1E-18 T 10-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 VF_2357 98cea41ffe8412c6e056b84cacb48b9e 266 Gene3D G3DSA:3.40.50.1360 1 266 3.7E-115 T 10-10-2018 VF_2357 98cea41ffe8412c6e056b84cacb48b9e 266 SUPERFAMILY SSF100950 1 263 4.03E-102 T 10-10-2018 IPR037171 NagB/RpiA transferase-like VF_2357 98cea41ffe8412c6e056b84cacb48b9e 266 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 5.3E-136 T 10-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 VF_2357 98cea41ffe8412c6e056b84cacb48b9e 266 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 10-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 VF_2357 98cea41ffe8412c6e056b84cacb48b9e 266 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 40.102 T 10-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 VF_1969 fd0caf52a7f9cc44779bbfea820e051c 375 SUPERFAMILY SSF51713 2 364 1.02E-163 T 10-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 VF_1969 fd0caf52a7f9cc44779bbfea820e051c 375 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 368 8.7E-186 T 10-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 VF_1969 fd0caf52a7f9cc44779bbfea820e051c 375 Pfam PF01702 Queuine tRNA-ribosyltransferase 126 361 2.0E-95 T 10-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 VF_1969 fd0caf52a7f9cc44779bbfea820e051c 375 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 368 1.1E-176 T 10-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 VF_1969 fd0caf52a7f9cc44779bbfea820e051c 375 Gene3D G3DSA:3.20.20.105 1 368 2.1E-172 T 10-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 VF_1969 fd0caf52a7f9cc44779bbfea820e051c 375 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 364 57.476 T 10-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 VF_1770 7a2e433878a18176e09a14727724069d 285 SUPERFAMILY SSF53223 1 122 1.15E-40 T 10-10-2018 VF_1770 7a2e433878a18176e09a14727724069d 285 SUPERFAMILY SSF51735 123 282 2.55E-50 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1770 7a2e433878a18176e09a14727724069d 285 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 10-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VF_1770 7a2e433878a18176e09a14727724069d 285 Gene3D G3DSA:3.40.50.720 6 259 1.9E-107 T 10-10-2018 VF_1770 7a2e433878a18176e09a14727724069d 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 1.2E-87 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VF_1770 7a2e433878a18176e09a14727724069d 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 1.2E-87 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VF_1770 7a2e433878a18176e09a14727724069d 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 1.2E-87 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VF_1770 7a2e433878a18176e09a14727724069d 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.2E-87 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VF_1770 7a2e433878a18176e09a14727724069d 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 1.2E-87 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VF_1770 7a2e433878a18176e09a14727724069d 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.2E-87 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VF_1770 7a2e433878a18176e09a14727724069d 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 1.2E-87 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VF_1770 7a2e433878a18176e09a14727724069d 285 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 1.2E-67 T 10-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VF_1770 7a2e433878a18176e09a14727724069d 285 Gene3D G3DSA:3.40.50.10860 8 276 1.9E-107 T 10-10-2018 VF_1770 7a2e433878a18176e09a14727724069d 285 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 38.165 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VF_1770 7a2e433878a18176e09a14727724069d 285 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 7.5E-40 T 10-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VF_1770 7a2e433878a18176e09a14727724069d 285 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 10-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VF_A0004 f478184ff9deb978190bc15bac17732c 368 Gene3D G3DSA:3.40.630.10 17 362 4.9E-115 T 10-10-2018 VF_A0004 f478184ff9deb978190bc15bac17732c 368 TIGRFAM TIGR01883 PepT-like: peptidase T-like protein 8 366 8.0E-150 T 10-10-2018 IPR010162 Peptidase M20B, peptidase T-like VF_A0004 f478184ff9deb978190bc15bac17732c 368 SUPERFAMILY SSF53187 7 367 7.33E-59 T 10-10-2018 VF_A0004 f478184ff9deb978190bc15bac17732c 368 Gene3D G3DSA:3.30.70.360 176 287 4.9E-115 T 10-10-2018 VF_A0004 f478184ff9deb978190bc15bac17732c 368 Pfam PF01546 Peptidase family M20/M25/M40 73 367 1.9E-18 T 10-10-2018 IPR002933 Peptidase M20 GO:0016787 VF_A0004 f478184ff9deb978190bc15bac17732c 368 SUPERFAMILY SSF55031 177 288 7.46E-23 T 10-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VF_A0004 f478184ff9deb978190bc15bac17732c 368 Pfam PF07687 Peptidase dimerisation domain 177 273 2.2E-14 T 10-10-2018 IPR011650 Peptidase M20, dimerisation domain VF_0878 2cfcdb97a43d4eaa7822fb4a598548cd 346 Gene3D G3DSA:2.40.50.100 50 82 9.5E-12 T 10-10-2018 VF_0878 2cfcdb97a43d4eaa7822fb4a598548cd 346 Gene3D G3DSA:1.10.287.470 116 184 2.0E-9 T 10-10-2018 VF_0878 2cfcdb97a43d4eaa7822fb4a598548cd 346 SUPERFAMILY SSF111369 49 102 5.1E-8 T 10-10-2018 VF_0878 2cfcdb97a43d4eaa7822fb4a598548cd 346 Gene3D G3DSA:1.10.287.470 83 111 9.5E-12 T 10-10-2018 VF_0878 2cfcdb97a43d4eaa7822fb4a598548cd 346 SUPERFAMILY SSF111369 187 287 1.83E-13 T 10-10-2018 VF_0878 2cfcdb97a43d4eaa7822fb4a598548cd 346 Gene3D G3DSA:2.40.30.170 232 346 2.3E-35 T 10-10-2018 VF_0878 2cfcdb97a43d4eaa7822fb4a598548cd 346 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 48 292 8.5E-21 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VF_0878 2cfcdb97a43d4eaa7822fb4a598548cd 346 SUPERFAMILY SSF111369 116 178 5.1E-7 T 10-10-2018 VF_1369 e30cb2583288ed0600a0fd68daacfdae 677 SUPERFAMILY SSF58104 368 677 4.32E-76 T 10-10-2018 VF_1369 e30cb2583288ed0600a0fd68daacfdae 677 SMART SM00304 343 400 2.3E-11 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_1369 e30cb2583288ed0600a0fd68daacfdae 677 Pfam PF02743 Cache domain 88 307 4.7E-23 T 10-10-2018 IPR033479 Double Cache domain 1 VF_1369 e30cb2583288ed0600a0fd68daacfdae 677 SMART SM00283 415 676 3.5E-67 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1369 e30cb2583288ed0600a0fd68daacfdae 677 SUPERFAMILY SSF103190 125 211 7.61E-7 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_1369 e30cb2583288ed0600a0fd68daacfdae 677 Gene3D G3DSA:1.10.287.950 345 677 4.9E-70 T 10-10-2018 VF_1369 e30cb2583288ed0600a0fd68daacfdae 677 Gene3D G3DSA:3.30.450.20 101 320 1.6E-46 T 10-10-2018 VF_1369 e30cb2583288ed0600a0fd68daacfdae 677 Pfam PF00672 HAMP domain 347 396 4.2E-8 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_1369 e30cb2583288ed0600a0fd68daacfdae 677 Gene3D G3DSA:3.30.450.20 111 218 1.6E-46 T 10-10-2018 VF_1369 e30cb2583288ed0600a0fd68daacfdae 677 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 475 643 2.7E-41 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 314 328 - T 10-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 735 53.8 T 10-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 Pfam PF08272 Topoisomerase I zinc-ribbon-like 760 796 1.9E-13 T 10-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 Pfam PF08272 Topoisomerase I zinc-ribbon-like 827 866 1.7E-18 T 10-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 SUPERFAMILY SSF57783 812 868 1.65E-21 T 10-10-2018 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 Pfam PF01751 Toprim domain 5 147 1.4E-30 T 10-10-2018 IPR006171 TOPRIM domain VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 638 4.5E-243 T 10-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 Gene3D G3DSA:1.10.460.10 170 575 1.0E-160 T 10-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 Gene3D G3DSA:2.20.25.10 811 869 1.9E-26 T 10-10-2018 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 SMART SM00436 138 226 4.3E-45 T 10-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 SMART SM00493 3 137 2.6E-30 T 10-10-2018 IPR006171 TOPRIM domain VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 Pfam PF01131 DNA topoisomerase 165 568 1.3E-125 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 SUPERFAMILY SSF57783 747 810 1.02E-19 T 10-10-2018 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 SUPERFAMILY SSF56712 3 613 2.35E-197 T 10-10-2018 IPR023405 DNA topoisomerase, type IA, core domain VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 Gene3D G3DSA:1.10.290.10 285 409 1.0E-160 T 10-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 Gene3D G3DSA:3.30.65.10 747 810 1.5E-32 T 10-10-2018 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 SMART SM00437 277 531 4.1E-119 T 10-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 Gene3D G3DSA:2.70.20.10 218 477 1.0E-160 T 10-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 Gene3D G3DSA:3.40.50.140 1 168 5.2E-65 T 10-10-2018 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 711 748 1.1E-7 T 10-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 601 626 4.4E-6 T 10-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 319 328 1.8E-35 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 196 214 1.8E-35 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 494 508 1.8E-35 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 111 124 1.8E-35 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_1051 c2fd70f4d2ec28007ec1051b8c26fe2f 876 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 395 411 1.8E-35 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_2020 6dde6ea6250467a4b5904aa073c1b297 448 Pfam PF03406 Phage tail fibre repeat 184 225 2.4E-14 T 10-10-2018 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 VF_0275 20cc987eb6655d8024d2995c0f29f53d 156 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 146 7.0E-27 T 10-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 VF_0275 20cc987eb6655d8024d2995c0f29f53d 156 SUPERFAMILY SSF46785 4 77 2.45E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0275 20cc987eb6655d8024d2995c0f29f53d 156 Gene3D G3DSA:3.30.1360.40 75 156 1.8E-32 T 10-10-2018 VF_0275 20cc987eb6655d8024d2995c0f29f53d 156 Hamap MF_00173 Arginine repressor [argR]. 1 155 56.388 T 10-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VF_0275 20cc987eb6655d8024d2995c0f29f53d 156 Pfam PF01316 Arginine repressor, DNA binding domain 6 73 1.4E-22 T 10-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 VF_0275 20cc987eb6655d8024d2995c0f29f53d 156 PRINTS PR01467 Bacterial arginine repressor signature 42 57 2.1E-23 T 10-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VF_0275 20cc987eb6655d8024d2995c0f29f53d 156 PRINTS PR01467 Bacterial arginine repressor signature 90 103 2.1E-23 T 10-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VF_0275 20cc987eb6655d8024d2995c0f29f53d 156 PRINTS PR01467 Bacterial arginine repressor signature 121 136 2.1E-23 T 10-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VF_0275 20cc987eb6655d8024d2995c0f29f53d 156 PRINTS PR01467 Bacterial arginine repressor signature 25 38 2.1E-23 T 10-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VF_0275 20cc987eb6655d8024d2995c0f29f53d 156 Pfam PF02863 Arginine repressor, C-terminal domain 82 147 3.7E-21 T 10-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 VF_0275 20cc987eb6655d8024d2995c0f29f53d 156 Gene3D G3DSA:1.10.10.10 1 74 6.0E-32 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0275 20cc987eb6655d8024d2995c0f29f53d 156 SUPERFAMILY SSF55252 82 151 1.03E-18 T 10-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 VF_0275 20cc987eb6655d8024d2995c0f29f53d 156 TIGRFAM TIGR01529 argR_whole: arginine repressor 11 151 8.5E-42 T 10-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VF_2483 60d046e307b99f9f5d417f4a5c816a66 303 SUPERFAMILY SSF56349 9 294 4.41E-53 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VF_2483 60d046e307b99f9f5d417f4a5c816a66 303 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 11 300 54.408 T 10-10-2018 IPR023009 Tyrosine recombinase XerC/XerD VF_2483 60d046e307b99f9f5d417f4a5c816a66 303 Gene3D G3DSA:1.10.150.130 9 104 6.3E-16 T 10-10-2018 IPR010998 Integrase/recombinase, N-terminal VF_2483 60d046e307b99f9f5d417f4a5c816a66 303 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 15 302 1.1E-106 T 10-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 VF_2483 60d046e307b99f9f5d417f4a5c816a66 303 Pfam PF00589 Phage integrase family 118 286 1.8E-49 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VF_2483 60d046e307b99f9f5d417f4a5c816a66 303 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 13 95 1.2E-16 T 10-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 VF_2483 60d046e307b99f9f5d417f4a5c816a66 303 Gene3D G3DSA:1.10.443.10 117 294 8.0E-58 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VF_2186 bdf61cfdcb65c91c98a98dca23fe6f75 562 SUPERFAMILY SSF160246 2 140 5.49E-27 T 10-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily VF_2186 bdf61cfdcb65c91c98a98dca23fe6f75 562 Pfam PF00437 Type II/IV secretion system protein 188 455 8.7E-90 T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_2186 bdf61cfdcb65c91c98a98dca23fe6f75 562 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 38 142 1.7E-17 T 10-10-2018 IPR007831 General secretory system II, protein E, N-terminal VF_2186 bdf61cfdcb65c91c98a98dca23fe6f75 562 Gene3D G3DSA:3.30.450.90 151 288 5.7E-46 T 10-10-2018 VF_2186 bdf61cfdcb65c91c98a98dca23fe6f75 562 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 5 559 1.1E-233 T 10-10-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 VF_2186 bdf61cfdcb65c91c98a98dca23fe6f75 562 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 383 397 - T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_2186 bdf61cfdcb65c91c98a98dca23fe6f75 562 Gene3D G3DSA:3.40.50.300 289 561 2.1E-103 T 10-10-2018 VF_2186 bdf61cfdcb65c91c98a98dca23fe6f75 562 SUPERFAMILY SSF52540 176 559 8.4E-90 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2186 bdf61cfdcb65c91c98a98dca23fe6f75 562 Gene3D G3DSA:3.30.300.160 60 140 3.1E-7 T 10-10-2018 VF_1554 4e573185a4aa94a70ee81d8114e6446c 478 Hamap MF_01182 Cytochrome c-552 [nrfA]. 2 474 58.268 T 10-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 VF_1554 4e573185a4aa94a70ee81d8114e6446c 478 Pfam PF02335 Cytochrome c552 40 469 3.5E-180 T 10-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 VF_1554 4e573185a4aa94a70ee81d8114e6446c 478 SUPERFAMILY SSF48695 35 470 2.75E-162 T 10-10-2018 IPR036280 Multiheme cytochrome superfamily VF_1554 4e573185a4aa94a70ee81d8114e6446c 478 Gene3D G3DSA:1.20.140.10 308 450 9.0E-189 T 10-10-2018 VF_1554 4e573185a4aa94a70ee81d8114e6446c 478 TIGRFAM TIGR03152 cyto_c552_HCOOH: formate-dependent cytochrome c nitrite reductase, c552 subunit 35 472 2.5E-258 T 10-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 VF_1554 4e573185a4aa94a70ee81d8114e6446c 478 Gene3D G3DSA:1.10.1130.10 39 469 9.0E-189 T 10-10-2018 VF_1554 4e573185a4aa94a70ee81d8114e6446c 478 PIRSF PIRSF000243 8 476 1.1E-125 T 10-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 VF_0130 8ad9d242b077f688165b2c832dd4d6ba 272 Gene3D G3DSA:1.10.8.50 131 269 5.3E-46 T 10-10-2018 VF_0130 8ad9d242b077f688165b2c832dd4d6ba 272 SUPERFAMILY SSF46946 130 221 9.03E-29 T 10-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 VF_0130 8ad9d242b077f688165b2c832dd4d6ba 272 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 268 1.3E-95 T 10-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 VF_0130 8ad9d242b077f688165b2c832dd4d6ba 272 Gene3D G3DSA:3.20.190.10 2 128 5.6E-42 T 10-10-2018 IPR035937 MutM-like, N-terminal VF_0130 8ad9d242b077f688165b2c832dd4d6ba 272 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 269 41.919 T 10-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 VF_0130 8ad9d242b077f688165b2c832dd4d6ba 272 SMART SM00898 2 115 6.8E-56 T 10-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 VF_0130 8ad9d242b077f688165b2c832dd4d6ba 272 SMART SM01232 129 221 2.1E-42 T 10-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 VF_0130 8ad9d242b077f688165b2c832dd4d6ba 272 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 114 6.0E-33 T 10-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 VF_0130 8ad9d242b077f688165b2c832dd4d6ba 272 SUPERFAMILY SSF81624 2 138 4.97E-41 T 10-10-2018 IPR035937 MutM-like, N-terminal VF_0130 8ad9d242b077f688165b2c832dd4d6ba 272 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 129 218 5.0E-27 T 10-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 VF_0130 8ad9d242b077f688165b2c832dd4d6ba 272 Pfam PF06827 Zinc finger found in FPG and IleRS 242 269 2.9E-8 T 10-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 VF_0130 8ad9d242b077f688165b2c832dd4d6ba 272 SUPERFAMILY SSF57716 217 269 2.65E-16 T 10-10-2018 VF_0130 8ad9d242b077f688165b2c832dd4d6ba 272 ProSitePatterns PS01242 Zinc finger FPG-type signature. 244 268 - T 10-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 VF_1845 a75b08ff483e406082386c412605ea45 344 PIRSF PIRSF002888 1 328 5.0E-95 T 10-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VF_1845 a75b08ff483e406082386c412605ea45 344 Pfam PF02154 Flagellar motor switch protein FliM 37 229 4.2E-82 T 10-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VF_1845 a75b08ff483e406082386c412605ea45 344 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 250 319 2.8E-21 T 10-10-2018 IPR001543 Surface presentation of antigen (SpoA) VF_1845 a75b08ff483e406082386c412605ea45 344 PRINTS PR00955 Flagellar motor switch protein FliM signature 88 104 1.6E-18 T 10-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VF_1845 a75b08ff483e406082386c412605ea45 344 PRINTS PR00955 Flagellar motor switch protein FliM signature 211 229 1.6E-18 T 10-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VF_1845 a75b08ff483e406082386c412605ea45 344 PRINTS PR00955 Flagellar motor switch protein FliM signature 113 132 1.6E-18 T 10-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VF_1845 a75b08ff483e406082386c412605ea45 344 PRINTS PR00955 Flagellar motor switch protein FliM signature 2 15 1.6E-18 T 10-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VF_1845 a75b08ff483e406082386c412605ea45 344 Gene3D G3DSA:3.40.1550.10 43 230 5.1E-55 T 10-10-2018 IPR028976 CheC-like superfamily VF_1845 a75b08ff483e406082386c412605ea45 344 SUPERFAMILY SSF101801 247 323 7.06E-18 T 10-10-2018 IPR036429 SpoA-like superfamily VF_1845 a75b08ff483e406082386c412605ea45 344 Gene3D G3DSA:2.30.330.10 239 327 8.1E-10 T 10-10-2018 IPR036429 SpoA-like superfamily VF_1845 a75b08ff483e406082386c412605ea45 344 SUPERFAMILY SSF103039 4 230 9.68E-21 T 10-10-2018 IPR028976 CheC-like superfamily VF_1845 a75b08ff483e406082386c412605ea45 344 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 3 319 1.0E-120 T 10-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VF_2124 f8a64526f44683324b8fcf525f51ec1b 1515 Gene3D G3DSA:3.60.20.10 21 560 0.0 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_2124 f8a64526f44683324b8fcf525f51ec1b 1515 Pfam PF01493 GXGXG motif 1267 1452 2.4E-84 T 10-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 VF_2124 f8a64526f44683324b8fcf525f51ec1b 1515 Pfam PF04898 Glutamate synthase central domain 472 756 4.7E-116 T 10-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 VF_2124 f8a64526f44683324b8fcf525f51ec1b 1515 Pfam PF01645 Conserved region in glutamate synthase 817 1187 1.3E-150 T 10-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 VF_2124 f8a64526f44683324b8fcf525f51ec1b 1515 Gene3D G3DSA:3.20.20.70 448 815 0.0 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_2124 f8a64526f44683324b8fcf525f51ec1b 1515 Pfam PF00310 Glutamine amidotransferases class-II 21 443 9.9E-185 T 10-10-2018 IPR017932 Glutamine amidotransferase type 2 domain VF_2124 f8a64526f44683324b8fcf525f51ec1b 1515 SUPERFAMILY SSF56235 21 447 3.16E-152 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_2124 f8a64526f44683324b8fcf525f51ec1b 1515 Gene3D G3DSA:2.160.20.60 1239 1510 1.1E-109 T 10-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 VF_2124 f8a64526f44683324b8fcf525f51ec1b 1515 Gene3D G3DSA:3.20.20.70 498 1204 0.0 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_2124 f8a64526f44683324b8fcf525f51ec1b 1515 SUPERFAMILY SSF51395 451 1221 1.18E-265 T 10-10-2018 VF_2124 f8a64526f44683324b8fcf525f51ec1b 1515 SUPERFAMILY SSF69336 1235 1498 6.02E-96 T 10-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 VF_A0468 e2fecf635d50085b08121ab520ee4853 500 Gene3D G3DSA:3.30.360.10 180 488 1.2E-123 T 10-10-2018 VF_A0468 e2fecf635d50085b08121ab520ee4853 500 SUPERFAMILY SSF51735 3 194 3.28E-61 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0468 e2fecf635d50085b08121ab520ee4853 500 PIRSF PIRSF000110 1 489 1.1E-176 T 10-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VF_A0468 e2fecf635d50085b08121ab520ee4853 500 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 6 487 84.549 T 10-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VF_A0468 e2fecf635d50085b08121ab520ee4853 500 SUPERFAMILY SSF55347 181 489 1.44E-112 T 10-10-2018 VF_A0468 e2fecf635d50085b08121ab520ee4853 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 147 160 7.0E-49 T 10-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VF_A0468 e2fecf635d50085b08121ab520ee4853 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 241 257 7.0E-49 T 10-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VF_A0468 e2fecf635d50085b08121ab520ee4853 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 171 199 7.0E-49 T 10-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VF_A0468 e2fecf635d50085b08121ab520ee4853 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 332 358 7.0E-49 T 10-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VF_A0468 e2fecf635d50085b08121ab520ee4853 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 223 240 7.0E-49 T 10-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VF_A0468 e2fecf635d50085b08121ab520ee4853 500 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 10 191 3.5E-62 T 10-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VF_A0468 e2fecf635d50085b08121ab520ee4853 500 Gene3D G3DSA:3.40.50.720 3 179 3.0E-57 T 10-10-2018 VF_A0468 e2fecf635d50085b08121ab520ee4853 500 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 181 187 - T 10-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VF_A0468 e2fecf635d50085b08121ab520ee4853 500 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 6 486 3.5E-201 T 10-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VF_A0468 e2fecf635d50085b08121ab520ee4853 500 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 193 486 1.6E-114 T 10-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VF_A1153 4c6a053601887525856767bf31634d64 319 Gene3D G3DSA:3.40.50.150 44 315 1.6E-80 T 10-10-2018 VF_A1153 4c6a053601887525856767bf31634d64 319 Pfam PF05971 Protein of unknown function (DUF890) 9 314 2.4E-127 T 10-10-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 VF_A1153 4c6a053601887525856767bf31634d64 319 SUPERFAMILY SSF53335 48 313 2.02E-32 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_A1153 4c6a053601887525856767bf31634d64 319 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 10 317 55.442 T 10-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 VF_A1153 4c6a053601887525856767bf31634d64 319 PIRSF PIRSF029038 1 319 2.3E-154 T 10-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 VF_2370 61366b41f38e8cc9f58b94ec949eb823 340 Gene3D G3DSA:3.40.50.300 10 215 2.0E-47 T 10-10-2018 VF_2370 61366b41f38e8cc9f58b94ec949eb823 340 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 12 193 3.7E-41 T 10-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain VF_2370 61366b41f38e8cc9f58b94ec949eb823 340 SUPERFAMILY SSF52540 13 205 5.33E-24 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1565 c1429a89ed9c3668622bae608aba2f99 569 Pfam PF00005 ABC transporter 20 170 1.6E-26 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1565 c1429a89ed9c3668622bae608aba2f99 569 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1565 c1429a89ed9c3668622bae608aba2f99 569 SUPERFAMILY SSF52540 299 528 9.24E-59 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1565 c1429a89ed9c3668622bae608aba2f99 569 Pfam PF00005 ABC transporter 316 462 2.6E-31 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1565 c1429a89ed9c3668622bae608aba2f99 569 ProSitePatterns PS00211 ABC transporters family signature. 434 448 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1565 c1429a89ed9c3668622bae608aba2f99 569 Pfam PF12558 ATP-binding cassette cobalt transporter 235 307 3.6E-16 T 10-10-2018 IPR022216 Putative ABC cobalt transporter VF_1565 c1429a89ed9c3668622bae608aba2f99 569 Gene3D G3DSA:3.40.50.300 1 253 3.4E-67 T 10-10-2018 VF_1565 c1429a89ed9c3668622bae608aba2f99 569 SUPERFAMILY SSF52540 3 235 1.5E-54 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1565 c1429a89ed9c3668622bae608aba2f99 569 SMART SM00382 325 511 8.3E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1565 c1429a89ed9c3668622bae608aba2f99 569 SMART SM00382 29 221 1.9E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1565 c1429a89ed9c3668622bae608aba2f99 569 Gene3D G3DSA:3.40.50.300 297 567 1.6E-64 T 10-10-2018 VF_1352 59eacf9bc8cedc12df4028c6be88befd 150 Gene3D G3DSA:3.90.79.10 8 142 1.8E-25 T 10-10-2018 VF_1352 59eacf9bc8cedc12df4028c6be88befd 150 Pfam PF00293 NUDIX domain 14 126 1.9E-17 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VF_1352 59eacf9bc8cedc12df4028c6be88befd 150 SUPERFAMILY SSF55811 8 136 5.55E-26 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VF_0035 07940efb0c14d0337137a37f34dcdaf6 256 Gene3D G3DSA:3.20.20.70 1 256 9.6E-111 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0035 07940efb0c14d0337137a37f34dcdaf6 256 Pfam PF05690 Thiazole biosynthesis protein ThiG 7 250 1.3E-108 T 10-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 VF_0035 07940efb0c14d0337137a37f34dcdaf6 256 SUPERFAMILY SSF110399 3 239 2.09E-85 T 10-10-2018 VF_0035 07940efb0c14d0337137a37f34dcdaf6 256 Hamap MF_00443 Thiazole synthase [thiG]. 4 256 42.662 T 10-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 VF_2142 22db374b02beaa9d9384cdfc7b3cf7b6 327 SUPERFAMILY SSF52540 6 252 3.15E-64 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2142 22db374b02beaa9d9384cdfc7b3cf7b6 327 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_2142 22db374b02beaa9d9384cdfc7b3cf7b6 327 SMART SM00382 34 231 2.3E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2142 22db374b02beaa9d9384cdfc7b3cf7b6 327 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 2.9E-17 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_2142 22db374b02beaa9d9384cdfc7b3cf7b6 327 Pfam PF00005 ABC transporter 25 181 1.1E-28 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_2142 22db374b02beaa9d9384cdfc7b3cf7b6 327 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 317 1.5E-23 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_2142 22db374b02beaa9d9384cdfc7b3cf7b6 327 Gene3D G3DSA:3.40.50.300 5 326 6.2E-91 T 10-10-2018 VF_1740 a234a90068debf2f432303d0d394e956 245 SUPERFAMILY SSF51735 5 244 1.58E-87 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1740 a234a90068debf2f432303d0d394e956 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 187 6.5E-5 T 10-10-2018 VF_1740 a234a90068debf2f432303d0d394e956 245 Gene3D G3DSA:3.40.50.720 1 245 7.2E-90 T 10-10-2018 VF_1740 a234a90068debf2f432303d0d394e956 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.2E-52 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1740 a234a90068debf2f432303d0d394e956 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.2E-52 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1740 a234a90068debf2f432303d0d394e956 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.2E-52 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1740 a234a90068debf2f432303d0d394e956 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.2E-52 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1740 a234a90068debf2f432303d0d394e956 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.2E-52 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1740 a234a90068debf2f432303d0d394e956 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.2E-52 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1740 a234a90068debf2f432303d0d394e956 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 242 2.6E-67 T 10-10-2018 VF_1740 a234a90068debf2f432303d0d394e956 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VF_1740 a234a90068debf2f432303d0d394e956 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 5.6E-17 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1740 a234a90068debf2f432303d0d394e956 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 5.6E-17 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1740 a234a90068debf2f432303d0d394e956 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 5.6E-17 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1740 a234a90068debf2f432303d0d394e956 245 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 9 243 3.0E-100 T 10-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 351 853 2.0E-86 T 10-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 ProSitePatterns PS01229 Hypothetical cof family signature 2. 774 796 - T 10-10-2018 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 Gene3D G3DSA:3.40.50.1000 562 826 3.9E-85 T 10-10-2018 IPR023214 HAD superfamily VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 Gene3D G3DSA:3.30.70.100 65 146 1.6E-5 T 10-10-2018 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 583 589 - T 10-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 Pfam PF00403 Heavy-metal-associated domain 164 218 1.0E-14 T 10-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 ProSitePatterns PS01047 Heavy-metal-associated domain. 164 193 - T 10-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 Gene3D G3DSA:2.70.150.20 367 483 1.3E-37 T 10-10-2018 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 Pfam PF00702 haloacid dehalogenase-like hydrolase 577 787 7.2E-46 T 10-10-2018 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 Gene3D G3DSA:3.40.1110.10 592 706 3.9E-85 T 10-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 Gene3D G3DSA:3.30.70.100 147 230 1.6E-18 T 10-10-2018 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 805 830 1.6E-5 T 10-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 774 790 1.6E-5 T 10-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 SUPERFAMILY SSF55008 155 222 6.02E-17 T 10-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 Gene3D G3DSA:3.30.70.100 3 63 8.5E-6 T 10-10-2018 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 SUPERFAMILY SSF81653 381 479 3.79E-27 T 10-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 581 595 7.6E-25 T 10-10-2018 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 699 710 7.6E-25 T 10-10-2018 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 774 793 7.6E-25 T 10-10-2018 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 797 809 7.6E-25 T 10-10-2018 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 721 731 7.6E-25 T 10-10-2018 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 429 443 7.6E-25 T 10-10-2018 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 SUPERFAMILY SSF81665 345 846 1.96E-11 T 10-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 SUPERFAMILY SSF55008 4 63 7.2E-9 T 10-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 SUPERFAMILY SSF55008 65 128 2.36E-7 T 10-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 Pfam PF00122 E1-E2 ATPase 380 560 8.8E-52 T 10-10-2018 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 SUPERFAMILY SSF56784 579 880 4.34E-54 T 10-10-2018 IPR036412 HAD-like superfamily VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 348 881 5.5E-115 T 10-10-2018 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 312 883 9.7E-181 T 10-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 VF_0781 7c913470a6a5f468a8ed495e0e85477e 893 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 293 884 3.7E-184 T 10-10-2018 VF_1880 a0071a55bc2fe864b551c475c977e523 255 Gene3D G3DSA:2.30.30.760 195 255 4.7E-10 T 10-10-2018 VF_1880 a0071a55bc2fe864b551c475c977e523 255 SMART SM00858 133 195 5.6E-6 T 10-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 VF_1880 a0071a55bc2fe864b551c475c977e523 255 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 121 253 9.2E-38 T 10-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal VF_1880 a0071a55bc2fe864b551c475c977e523 255 Pfam PF13144 Chaperone for flagella basal body P-ring formation 56 253 2.3E-53 T 10-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal VF_2188 ebda06dc44eef01c0f252789272e2229 295 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 147 164 3.9E-30 T 10-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial VF_2188 ebda06dc44eef01c0f252789272e2229 295 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 228 243 3.9E-30 T 10-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial VF_2188 ebda06dc44eef01c0f252789272e2229 295 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 205 215 3.9E-30 T 10-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial VF_2188 ebda06dc44eef01c0f252789272e2229 295 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 216 227 3.9E-30 T 10-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial VF_2188 ebda06dc44eef01c0f252789272e2229 295 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 17 126 8.2E-34 T 10-10-2018 IPR010627 Peptidase A24A, N-terminal VF_2188 ebda06dc44eef01c0f252789272e2229 295 Pfam PF01478 Type IV leader peptidase family 139 248 4.2E-27 T 10-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 VF_1713 113eeb3bf91df52606b44e18c0314c4c 652 Gene3D G3DSA:3.40.50.300 19 283 5.8E-48 T 10-10-2018 VF_1713 113eeb3bf91df52606b44e18c0314c4c 652 SUPERFAMILY SSF52540 14 235 6.73E-26 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1713 113eeb3bf91df52606b44e18c0314c4c 652 SUPERFAMILY SSF52540 41 602 5.09E-12 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1713 113eeb3bf91df52606b44e18c0314c4c 652 SMART SM00491 477 606 1.7E-45 T 10-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 VF_1713 113eeb3bf91df52606b44e18c0314c4c 652 SMART SM00487 17 302 0.0014 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_1713 113eeb3bf91df52606b44e18c0314c4c 652 Pfam PF13307 Helicase C-terminal domain 462 619 6.5E-35 T 10-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 VF_1713 113eeb3bf91df52606b44e18c0314c4c 652 Gene3D G3DSA:3.40.50.300 445 639 5.3E-37 T 10-10-2018 VF_2368 1cb267d60f19aa0f8a4eb5898e0716a1 273 Pfam PF00950 ABC 3 transport family 4 256 4.8E-66 T 10-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 VF_2368 1cb267d60f19aa0f8a4eb5898e0716a1 273 SUPERFAMILY SSF81345 3 253 2.88E-35 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_2045 6350c3e5684c22dbe12eb4e5a913211f 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 127 294 1.5E-12 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_2045 6350c3e5684c22dbe12eb4e5a913211f 304 SUPERFAMILY SSF161098 25 304 1.44E-51 T 10-10-2018 IPR035906 MetI-like superfamily VF_2045 6350c3e5684c22dbe12eb4e5a913211f 304 Gene3D G3DSA:1.10.3720.10 19 290 6.3E-46 T 10-10-2018 IPR035906 MetI-like superfamily VF_2293 75d8dd28debfdcf96485edbb3fee295d 582 Pfam PF03958 Bacterial type II/III secretion system short domain 256 321 1.7E-12 T 10-10-2018 IPR005644 NolW-like VF_2293 75d8dd28debfdcf96485edbb3fee295d 582 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 526 559 - T 10-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 VF_2293 75d8dd28debfdcf96485edbb3fee295d 582 Gene3D G3DSA:2.60.40.3470 24 139 1.3E-16 T 10-10-2018 VF_2293 75d8dd28debfdcf96485edbb3fee295d 582 Gene3D G3DSA:3.55.50.30 140 254 5.9E-36 T 10-10-2018 VF_2293 75d8dd28debfdcf96485edbb3fee295d 582 Gene3D G3DSA:3.30.1370.120 255 319 3.5E-11 T 10-10-2018 IPR038591 NolW-like superfamily VF_2293 75d8dd28debfdcf96485edbb3fee295d 582 Pfam PF00263 Bacterial type II and III secretion system protein 422 580 2.0E-44 T 10-10-2018 IPR004846 Type II/III secretion system GO:0009306 VF_2293 75d8dd28debfdcf96485edbb3fee295d 582 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 158 580 3.0E-158 T 10-10-2018 IPR013355 Type IV pilus secretin PilQ VF_2293 75d8dd28debfdcf96485edbb3fee295d 582 SMART SM00965 182 230 1.8E-8 T 10-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 VF_2293 75d8dd28debfdcf96485edbb3fee295d 582 PRINTS PR00811 Bacterial general secretion pathway protein D signature 321 331 9.5E-21 T 10-10-2018 IPR001775 GspD/PilQ family VF_2293 75d8dd28debfdcf96485edbb3fee295d 582 PRINTS PR00811 Bacterial general secretion pathway protein D signature 453 463 9.5E-21 T 10-10-2018 IPR001775 GspD/PilQ family VF_2293 75d8dd28debfdcf96485edbb3fee295d 582 PRINTS PR00811 Bacterial general secretion pathway protein D signature 545 563 9.5E-21 T 10-10-2018 IPR001775 GspD/PilQ family VF_2293 75d8dd28debfdcf96485edbb3fee295d 582 PRINTS PR00811 Bacterial general secretion pathway protein D signature 568 582 9.5E-21 T 10-10-2018 IPR001775 GspD/PilQ family VF_2293 75d8dd28debfdcf96485edbb3fee295d 582 PRINTS PR00811 Bacterial general secretion pathway protein D signature 418 442 9.5E-21 T 10-10-2018 IPR001775 GspD/PilQ family VF_1274 7f55ac3d29d6f251f7c9fcbad63bcd8e 455 Pfam PF13636 RNA-binding PUA-like domain of methyltransferase RsmF 402 450 7.8E-12 T 10-10-2018 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain VF_1274 7f55ac3d29d6f251f7c9fcbad63bcd8e 455 Gene3D G3DSA:3.40.50.150 1 291 4.8E-94 T 10-10-2018 VF_1274 7f55ac3d29d6f251f7c9fcbad63bcd8e 455 Pfam PF01189 16S rRNA methyltransferase RsmB/F 97 289 1.7E-47 T 10-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 VF_1274 7f55ac3d29d6f251f7c9fcbad63bcd8e 455 Gene3D G3DSA:2.30.130.90 292 455 5.8E-68 T 10-10-2018 VF_1274 7f55ac3d29d6f251f7c9fcbad63bcd8e 455 Hamap MF_01579 Ribosomal RNA small subunit methyltransferase F [rsmF]. 1 455 63.852 T 10-10-2018 IPR023545 rRNA small subunit methyltransferase F GO:0008649 VF_1274 7f55ac3d29d6f251f7c9fcbad63bcd8e 455 SUPERFAMILY SSF53335 7 291 5.4E-59 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_1274 7f55ac3d29d6f251f7c9fcbad63bcd8e 455 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 6 86 3.9E-23 T 10-10-2018 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 VF_1274 7f55ac3d29d6f251f7c9fcbad63bcd8e 455 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 22 291 7.1E-97 T 10-10-2018 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 VF_1274 7f55ac3d29d6f251f7c9fcbad63bcd8e 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 274 291 2.3E-27 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VF_1274 7f55ac3d29d6f251f7c9fcbad63bcd8e 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 220 236 2.3E-27 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VF_1274 7f55ac3d29d6f251f7c9fcbad63bcd8e 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 170 182 2.3E-27 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VF_1274 7f55ac3d29d6f251f7c9fcbad63bcd8e 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 103 113 2.3E-27 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VF_1274 7f55ac3d29d6f251f7c9fcbad63bcd8e 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 72 86 2.3E-27 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VF_A0263 eabc7b332e5dbed4e803f562f5fc51bb 135 Pfam PF13275 S4 domain 15 77 2.1E-23 T 10-10-2018 VF_A0263 eabc7b332e5dbed4e803f562f5fc51bb 135 Gene3D G3DSA:3.10.290.10 3 79 7.0E-22 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VF_A0263 eabc7b332e5dbed4e803f562f5fc51bb 135 SUPERFAMILY SSF55174 6 78 7.2E-18 T 10-10-2018 VF_A0956 70d8461ae057c958b02c8e15eac03086 273 ProSitePatterns PS01228 Hypothetical cof family signature 1. 8 19 - T 10-10-2018 VF_A0956 70d8461ae057c958b02c8e15eac03086 273 ProSitePatterns PS01229 Hypothetical cof family signature 2. 220 242 - T 10-10-2018 VF_A0956 70d8461ae057c958b02c8e15eac03086 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 8 239 6.2E-26 T 10-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 VF_A0956 70d8461ae057c958b02c8e15eac03086 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 8 266 2.8E-62 T 10-10-2018 IPR000150 Cof family GO:0016787 VF_A0956 70d8461ae057c958b02c8e15eac03086 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 9 266 8.2E-69 T 10-10-2018 VF_A0956 70d8461ae057c958b02c8e15eac03086 273 Gene3D G3DSA:3.40.50.1000 7 267 1.6E-85 T 10-10-2018 IPR023214 HAD superfamily VF_A0956 70d8461ae057c958b02c8e15eac03086 273 SUPERFAMILY SSF56784 1 271 4.71E-80 T 10-10-2018 IPR036412 HAD-like superfamily VF_A0956 70d8461ae057c958b02c8e15eac03086 273 Gene3D G3DSA:3.30.1240.10 90 195 1.6E-85 T 10-10-2018 VF_1760 2ddd33d4163e4278701aadf638a06b88 224 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 218 7.5E-87 T 10-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 VF_1760 2ddd33d4163e4278701aadf638a06b88 224 Gene3D G3DSA:3.40.50.300 1 224 4.0E-85 T 10-10-2018 VF_1760 2ddd33d4163e4278701aadf638a06b88 224 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 34.883 T 10-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 VF_1760 2ddd33d4163e4278701aadf638a06b88 224 Pfam PF02224 Cytidylate kinase 8 220 1.5E-79 T 10-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 VF_1760 2ddd33d4163e4278701aadf638a06b88 224 SUPERFAMILY SSF52540 6 223 5.68E-47 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0677 0a4c940788d684cb8377881ca26e815d 212 Gene3D G3DSA:3.40.50.300 12 212 4.8E-39 T 10-10-2018 VF_0677 0a4c940788d684cb8377881ca26e815d 212 SMART SM00382 42 212 9.9E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0677 0a4c940788d684cb8377881ca26e815d 212 Pfam PF00005 ABC transporter 37 166 2.7E-19 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0677 0a4c940788d684cb8377881ca26e815d 212 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0677 0a4c940788d684cb8377881ca26e815d 212 SUPERFAMILY SSF52540 17 211 8.74E-35 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1347 a974dbd48b5949d0719b64aa9a266990 111 Pfam PF08274 PhnA Zinc-Ribbon 2 30 3.9E-13 T 10-10-2018 IPR013987 PhnA protein, N-terminal VF_1347 a974dbd48b5949d0719b64aa9a266990 111 SUPERFAMILY SSF57783 1 35 4.25E-13 T 10-10-2018 VF_1347 a974dbd48b5949d0719b64aa9a266990 111 Gene3D G3DSA:2.20.25.10 1 39 3.7E-17 T 10-10-2018 VF_1347 a974dbd48b5949d0719b64aa9a266990 111 SUPERFAMILY SSF82057 38 111 1.69E-24 T 10-10-2018 VF_1347 a974dbd48b5949d0719b64aa9a266990 111 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 2 111 1.6E-39 T 10-10-2018 IPR004624 PhnA protein VF_1347 a974dbd48b5949d0719b64aa9a266990 111 Pfam PF03831 PhnA domain 43 111 4.8E-26 T 10-10-2018 IPR013988 PhnA protein, C-terminal VF_1347 a974dbd48b5949d0719b64aa9a266990 111 Gene3D G3DSA:2.30.30.40 40 111 1.3E-26 T 10-10-2018 VF_A0206 d73bf271491695b68351ccf7b2c49097 416 Pfam PF07690 Major Facilitator Superfamily 33 368 6.0E-34 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_A0206 d73bf271491695b68351ccf7b2c49097 416 Gene3D G3DSA:1.20.1250.20 23 407 1.4E-41 T 10-10-2018 VF_A0206 d73bf271491695b68351ccf7b2c49097 416 SUPERFAMILY SSF103473 26 413 1.7E-49 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0206 d73bf271491695b68351ccf7b2c49097 416 ProSitePatterns PS00216 Sugar transport proteins signature 1. 83 99 - T 10-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 VF_1486 f4f672ee87cc37c291e542775f891ced 387 Pfam PF01425 Amidase 28 185 2.6E-32 T 10-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 VF_1486 f4f672ee87cc37c291e542775f891ced 387 Pfam PF01425 Amidase 247 376 6.8E-7 T 10-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 VF_1486 f4f672ee87cc37c291e542775f891ced 387 Gene3D G3DSA:3.90.1300.10 8 385 9.6E-64 T 10-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 VF_1486 f4f672ee87cc37c291e542775f891ced 387 SUPERFAMILY SSF75304 16 383 3.14E-62 T 10-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 VF_A0003 a7b1a29be98f207fb54c27fe2e90c489 513 Pfam PF16116 Domain of unknown function (DUF4832) 348 485 1.7E-13 T 10-10-2018 IPR032267 Domain of unknown function DUF4832 VF_A0003 a7b1a29be98f207fb54c27fe2e90c489 513 Gene3D G3DSA:3.20.20.80 87 235 5.3E-9 T 10-10-2018 VF_A0003 a7b1a29be98f207fb54c27fe2e90c489 513 SUPERFAMILY SSF51445 94 208 3.16E-5 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_1261 4f1ce89621157c2fd4d5c7fe55020633 126 SUPERFAMILY SSF54593 1 124 2.75E-24 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_1261 4f1ce89621157c2fd4d5c7fe55020633 126 Gene3D G3DSA:3.10.180.10 7 125 4.4E-37 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_1261 4f1ce89621157c2fd4d5c7fe55020633 126 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 122 7.3E-10 T 10-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 SUPERFAMILY SSF47323 642 904 1.61E-64 T 10-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 TIGRFAM TIGR00422 valS: valine--tRNA ligase 1 938 0.0 T 10-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 Gene3D G3DSA:3.90.740.10 198 361 2.4E-48 T 10-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 SUPERFAMILY SSF52374 1 641 7.93E-134 T 10-10-2018 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 Gene3D G3DSA:3.40.50.620 368 553 1.0E-40 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 SUPERFAMILY SSF50677 191 365 2.88E-58 T 10-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 631 4.8E-224 T 10-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 890 950 1.4E-16 T 10-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 Pfam PF08264 Anticodon-binding domain of tRNA 679 832 4.1E-38 T 10-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 SUPERFAMILY SSF46589 890 954 5.75E-17 T 10-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 Gene3D G3DSA:1.10.287.380 883 955 7.4E-18 T 10-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 Gene3D G3DSA:3.40.50.620 2 197 1.5E-56 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 Hamap MF_02004 Valine--tRNA ligase [valS]. 1 955 15.968 T 10-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 Gene3D G3DSA:1.10.730.10 576 823 7.9E-69 T 10-10-2018 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 PRINTS PR00986 Valyl-tRNA synthetase signature 236 253 9.6E-34 T 10-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 PRINTS PR00986 Valyl-tRNA synthetase signature 35 46 9.6E-34 T 10-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 PRINTS PR00986 Valyl-tRNA synthetase signature 369 382 9.6E-34 T 10-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 PRINTS PR00986 Valyl-tRNA synthetase signature 500 518 9.6E-34 T 10-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VF_0411 1c48132460829e1d5cefea4d1477a6e4 957 PRINTS PR00986 Valyl-tRNA synthetase signature 469 490 9.6E-34 T 10-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 SMART SM00465 16 97 8.5E-23 T 10-10-2018 IPR000305 GIY-YIG endonuclease VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 SUPERFAMILY SSF82771 15 99 5.1E-24 T 10-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 Pfam PF01541 GIY-YIG catalytic domain 17 92 6.2E-12 T 10-10-2018 IPR000305 GIY-YIG endonuclease VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 Pfam PF14520 Helix-hairpin-helix domain 554 606 4.8E-10 T 10-10-2018 VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 Pfam PF02151 UvrB/uvrC motif 204 236 2.0E-9 T 10-10-2018 IPR001943 UVR domain GO:0005515 VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 8 586 6.4E-213 T 10-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 Gene3D G3DSA:1.10.150.20 552 607 2.3E-24 T 10-10-2018 VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 Gene3D G3DSA:4.10.860.10 199 239 1.0E-5 T 10-10-2018 VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 Gene3D G3DSA:3.40.1440.10 5 101 1.6E-31 T 10-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 SUPERFAMILY SSF46600 189 242 5.62E-14 T 10-10-2018 IPR036876 UVR domain superfamily VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 SMART SM00278 553 572 1.0 T 10-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 SMART SM00278 585 604 4.0 T 10-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 SUPERFAMILY SSF47781 518 606 9.85E-20 T 10-10-2018 IPR010994 RuvA domain 2-like VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 Gene3D G3DSA:3.30.420.340 376 549 3.0E-46 T 10-10-2018 IPR038476 UvrC homology region 2 superfamily VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 Hamap MF_00203 UvrABC system protein C [uvrC]. 3 604 28.392 T 10-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 VF_1626 1a41771a980cdd29a3dd0f248cec4c63 608 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 385 539 3.7E-45 T 10-10-2018 IPR001162 UvrC family homology region VF_A0953 8e4ea209f0205fe995a90f5792a4054c 678 Pfam PF05954 Phage late control gene D protein (GPD) 28 333 8.8E-76 T 10-10-2018 VF_A0953 8e4ea209f0205fe995a90f5792a4054c 678 Gene3D G3DSA:2.40.50.230 360 459 8.1E-43 T 10-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily VF_A0953 8e4ea209f0205fe995a90f5792a4054c 678 SUPERFAMILY SSF69255 367 455 3.14E-33 T 10-10-2018 VF_A0953 8e4ea209f0205fe995a90f5792a4054c 678 Gene3D G3DSA:3.55.50.10 100 193 5.2E-75 T 10-10-2018 VF_A0953 8e4ea209f0205fe995a90f5792a4054c 678 SUPERFAMILY SSF69279 192 368 3.91E-28 T 10-10-2018 VF_A0953 8e4ea209f0205fe995a90f5792a4054c 678 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 21 506 5.1E-115 T 10-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein VF_A0953 8e4ea209f0205fe995a90f5792a4054c 678 Gene3D G3DSA:2.30.110.50 22 334 5.2E-75 T 10-10-2018 VF_A0953 8e4ea209f0205fe995a90f5792a4054c 678 Gene3D G3DSA:3.30.1920.30 225 290 5.2E-75 T 10-10-2018 VF_A0953 8e4ea209f0205fe995a90f5792a4054c 678 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 9 525 5.5E-192 T 10-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset VF_A0953 8e4ea209f0205fe995a90f5792a4054c 678 SUPERFAMILY SSF69279 10 188 9.07E-52 T 10-10-2018 VF_A0953 8e4ea209f0205fe995a90f5792a4054c 678 SUPERFAMILY SSF69349 445 627 7.77E-51 T 10-10-2018 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 456 2.3E-199 T 10-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 SUPERFAMILY SSF55729 466 586 7.85E-17 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 10-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 1.1E-27 T 10-10-2018 IPR000362 Fumarate lyase family VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 1.1E-27 T 10-10-2018 IPR000362 Fumarate lyase family VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 1.1E-27 T 10-10-2018 IPR000362 Fumarate lyase family VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 1.1E-27 T 10-10-2018 IPR000362 Fumarate lyase family VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 Pfam PF00206 Lyase 6 301 1.7E-87 T 10-10-2018 IPR022761 Fumarate lyase, N-terminal VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 2.9E-24 T 10-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 Gene3D G3DSA:1.10.275.10 1 107 3.5E-34 T 10-10-2018 IPR024083 Fumarase/histidase, N-terminal VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 PIRSF PIRSF036456 1 624 0.0 T 10-10-2018 IPR011244 Bifunctional argininosuccinate lyase/acetyltransferase GO:0004056|GO:0005737|GO:0006526|GO:0016746 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 Gene3D G3DSA:3.40.630.30 464 609 1.6E-25 T 10-10-2018 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 40.235 T 10-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 Pfam PF00583 Acetyltransferase (GNAT) family 503 570 1.4E-8 T 10-10-2018 IPR000182 GNAT domain VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 SUPERFAMILY SSF48557 3 456 1.73E-139 T 10-10-2018 IPR008948 L-Aspartase-like GO:0003824 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 4.9E-67 T 10-10-2018 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 4.9E-67 T 10-10-2018 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 4.9E-67 T 10-10-2018 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 4.9E-67 T 10-10-2018 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 4.9E-67 T 10-10-2018 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 4.9E-67 T 10-10-2018 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 Gene3D G3DSA:1.20.200.10 108 446 4.3E-146 T 10-10-2018 VF_2303 4c1cdbe7562ca7e38ced3b0316e64f13 624 Gene3D G3DSA:1.10.40.30 363 433 4.3E-146 T 10-10-2018 VF_A0796 de6609ee41691077e67a6ab589f0e147 320 Pfam PF00990 Diguanylate cyclase, GGDEF domain 154 310 2.6E-44 T 10-10-2018 IPR000160 GGDEF domain VF_A0796 de6609ee41691077e67a6ab589f0e147 320 SMART SM00267 142 314 8.8E-53 T 10-10-2018 IPR000160 GGDEF domain VF_A0796 de6609ee41691077e67a6ab589f0e147 320 SUPERFAMILY SSF55073 158 313 6.98E-46 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0796 de6609ee41691077e67a6ab589f0e147 320 SUPERFAMILY SSF55785 12 127 1.27E-9 T 10-10-2018 IPR035965 PAS domain superfamily VF_A0796 de6609ee41691077e67a6ab589f0e147 320 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 151 313 8.5E-53 T 10-10-2018 IPR000160 GGDEF domain VF_A0796 de6609ee41691077e67a6ab589f0e147 320 Gene3D G3DSA:3.30.70.270 147 316 2.9E-53 T 10-10-2018 VF_A0796 de6609ee41691077e67a6ab589f0e147 320 Gene3D G3DSA:3.30.450.20 9 138 2.0E-31 T 10-10-2018 VF_0466 5f90463ecdf14fdae0526e116158d305 310 Pfam PF01687 Riboflavin kinase 184 306 6.7E-37 T 10-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 VF_0466 5f90463ecdf14fdae0526e116158d305 310 SMART SM00904 183 307 2.1E-61 T 10-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 VF_0466 5f90463ecdf14fdae0526e116158d305 310 SUPERFAMILY SSF52374 14 178 3.56E-35 T 10-10-2018 VF_0466 5f90463ecdf14fdae0526e116158d305 310 Gene3D G3DSA:3.40.50.620 1 187 3.4E-62 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0466 5f90463ecdf14fdae0526e116158d305 310 Gene3D G3DSA:2.40.30.30 188 310 2.8E-39 T 10-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 VF_0466 5f90463ecdf14fdae0526e116158d305 310 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 306 5.9E-105 T 10-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 VF_0466 5f90463ecdf14fdae0526e116158d305 310 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 17 78 2.0E-9 T 10-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VF_0466 5f90463ecdf14fdae0526e116158d305 310 Pfam PF06574 FAD synthetase 12 167 1.5E-59 T 10-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 VF_0466 5f90463ecdf14fdae0526e116158d305 310 PIRSF PIRSF004491 1 310 4.6E-109 T 10-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 VF_0466 5f90463ecdf14fdae0526e116158d305 310 SUPERFAMILY SSF82114 175 308 6.32E-43 T 10-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 VF_0905 dfbbaea3ef5efe3e1a4b109e1b7526b8 1144 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 40 213 3.0E-43 T 10-10-2018 IPR025199 DNA translocase FtsK, 4TM region VF_0905 dfbbaea3ef5efe3e1a4b109e1b7526b8 1144 SUPERFAMILY SSF46785 1074 1138 6.39E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0905 dfbbaea3ef5efe3e1a4b109e1b7526b8 1144 Gene3D G3DSA:3.40.50.300 754 1056 1.4E-115 T 10-10-2018 VF_0905 dfbbaea3ef5efe3e1a4b109e1b7526b8 1144 SUPERFAMILY SSF52540 731 1043 1.33E-48 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0905 dfbbaea3ef5efe3e1a4b109e1b7526b8 1144 Pfam PF09397 Ftsk gamma domain 1076 1136 4.9E-25 T 10-10-2018 IPR018541 FtsK gamma domain VF_0905 dfbbaea3ef5efe3e1a4b109e1b7526b8 1144 Gene3D G3DSA:1.10.10.10 1068 1135 6.0E-27 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0905 dfbbaea3ef5efe3e1a4b109e1b7526b8 1144 Pfam PF01580 FtsK/SpoIIIE family 759 970 1.5E-68 T 10-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 VF_0905 dfbbaea3ef5efe3e1a4b109e1b7526b8 1144 SMART SM00843 1074 1139 2.4E-37 T 10-10-2018 IPR018541 FtsK gamma domain VF_0905 dfbbaea3ef5efe3e1a4b109e1b7526b8 1144 Gene3D G3DSA:3.30.980.40 649 753 5.4E-32 T 10-10-2018 VF_2211 1ebe2e8ea44d3f3163fcd424b8970c00 603 SUPERFAMILY SSF53822 260 598 8.95E-68 T 10-10-2018 IPR028082 Periplasmic binding protein-like I VF_2211 1ebe2e8ea44d3f3163fcd424b8970c00 603 Gene3D G3DSA:1.25.40.10 25 145 2.5E-10 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_2211 1ebe2e8ea44d3f3163fcd424b8970c00 603 Gene3D G3DSA:3.40.50.2300 366 595 2.1E-64 T 10-10-2018 VF_2211 1ebe2e8ea44d3f3163fcd424b8970c00 603 Gene3D G3DSA:3.40.50.2300 263 594 2.1E-64 T 10-10-2018 VF_2211 1ebe2e8ea44d3f3163fcd424b8970c00 603 Hamap MF_01890 Penicillin-binding protein activator LpoA [lpoA]. 1 601 29.876 T 10-10-2018 IPR007443 Penicillin-binding protein activator LpoA VF_2211 1ebe2e8ea44d3f3163fcd424b8970c00 603 Pfam PF04348 LppC putative lipoprotein 42 599 3.2E-147 T 10-10-2018 IPR007443 Penicillin-binding protein activator LpoA VF_2211 1ebe2e8ea44d3f3163fcd424b8970c00 603 Gene3D G3DSA:1.25.40.650 151 255 1.4E-16 T 10-10-2018 VF_A0226 be540ddd8d44cfac3023af708b277f7d 247 SUPERFAMILY SSF48452 35 227 1.8E-16 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0226 be540ddd8d44cfac3023af708b277f7d 247 Gene3D G3DSA:1.25.40.10 21 221 7.4E-18 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0711 f4882ed7fc2e8e3c990ee11754eb8522 627 ProSitePatterns PS00802 Transketolase signature 2. 425 441 - T 10-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VF_0711 f4882ed7fc2e8e3c990ee11754eb8522 627 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 10 626 45.704 T 10-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VF_0711 f4882ed7fc2e8e3c990ee11754eb8522 627 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 14 282 7.5E-119 T 10-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VF_0711 f4882ed7fc2e8e3c990ee11754eb8522 627 Pfam PF02780 Transketolase, C-terminal domain 503 617 4.3E-26 T 10-10-2018 IPR033248 Transketolase, C-terminal domain VF_0711 f4882ed7fc2e8e3c990ee11754eb8522 627 SUPERFAMILY SSF52518 8 381 2.39E-73 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_0711 f4882ed7fc2e8e3c990ee11754eb8522 627 ProSitePatterns PS00801 Transketolase signature 1. 36 55 - T 10-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VF_0711 f4882ed7fc2e8e3c990ee11754eb8522 627 SUPERFAMILY SSF52922 492 626 1.31E-29 T 10-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VF_0711 f4882ed7fc2e8e3c990ee11754eb8522 627 Gene3D G3DSA:3.40.50.920 495 627 1.9E-40 T 10-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VF_0711 f4882ed7fc2e8e3c990ee11754eb8522 627 SUPERFAMILY SSF52518 317 503 1.23E-55 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_0711 f4882ed7fc2e8e3c990ee11754eb8522 627 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 625 1.1E-297 T 10-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VF_0711 f4882ed7fc2e8e3c990ee11754eb8522 627 Gene3D G3DSA:3.40.50.970 317 491 9.9E-65 T 10-10-2018 VF_0711 f4882ed7fc2e8e3c990ee11754eb8522 627 Pfam PF02779 Transketolase, pyrimidine binding domain 319 479 3.6E-36 T 10-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VF_0711 f4882ed7fc2e8e3c990ee11754eb8522 627 SMART SM00861 319 483 2.3E-60 T 10-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VF_1854 eedb2465ffdc003a2ddb11ebe8be9c21 477 Gene3D G3DSA:3.40.50.300 120 300 1.6E-66 T 10-10-2018 VF_1854 eedb2465ffdc003a2ddb11ebe8be9c21 477 SUPERFAMILY SSF52540 136 370 3.61E-71 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1854 eedb2465ffdc003a2ddb11ebe8be9c21 477 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 215 230 - T 10-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VF_1854 eedb2465ffdc003a2ddb11ebe8be9c21 477 SUPERFAMILY SSF52172 3 174 6.26E-40 T 10-10-2018 IPR011006 CheY-like superfamily VF_1854 eedb2465ffdc003a2ddb11ebe8be9c21 477 Pfam PF00072 Response regulator receiver domain 6 115 2.0E-26 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1854 eedb2465ffdc003a2ddb11ebe8be9c21 477 Pfam PF02954 Bacterial regulatory protein, Fis family 428 467 2.7E-11 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_1854 eedb2465ffdc003a2ddb11ebe8be9c21 477 Gene3D G3DSA:1.10.8.60 302 379 2.9E-28 T 10-10-2018 VF_1854 eedb2465ffdc003a2ddb11ebe8be9c21 477 SUPERFAMILY SSF46689 342 468 4.08E-8 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1854 eedb2465ffdc003a2ddb11ebe8be9c21 477 Pfam PF00158 Sigma-54 interaction domain 132 295 8.8E-66 T 10-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VF_1854 eedb2465ffdc003a2ddb11ebe8be9c21 477 Gene3D G3DSA:3.40.50.2300 1 119 3.9E-33 T 10-10-2018 VF_1854 eedb2465ffdc003a2ddb11ebe8be9c21 477 Gene3D G3DSA:1.10.10.60 405 474 1.1E-8 T 10-10-2018 VF_1854 eedb2465ffdc003a2ddb11ebe8be9c21 477 SMART SM00448 4 115 2.7E-32 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1854 eedb2465ffdc003a2ddb11ebe8be9c21 477 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 342 351 - T 10-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VF_1854 eedb2465ffdc003a2ddb11ebe8be9c21 477 SMART SM00382 149 296 7.9E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2416 751666a5761beffe9ec0445804c28c5e 127 SUPERFAMILY SSF160369 1 121 6.15E-35 T 10-10-2018 VF_2416 751666a5761beffe9ec0445804c28c5e 127 Pfam PF00466 Ribosomal protein L10 1 64 2.1E-17 T 10-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 VF_2416 751666a5761beffe9ec0445804c28c5e 127 Gene3D G3DSA:3.30.70.1730 1 87 2.0E-25 T 10-10-2018 VF_A0882 3496be1da0791822b1c97331f8ff8355 392 Pfam PF01270 Glycosyl hydrolases family 8 30 372 2.0E-70 T 10-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VF_A0882 3496be1da0791822b1c97331f8ff8355 392 PRINTS PR00735 Glycosyl hydrolase family 8 signature 134 152 5.1E-14 T 10-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VF_A0882 3496be1da0791822b1c97331f8ff8355 392 PRINTS PR00735 Glycosyl hydrolase family 8 signature 358 372 5.1E-14 T 10-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VF_A0882 3496be1da0791822b1c97331f8ff8355 392 PRINTS PR00735 Glycosyl hydrolase family 8 signature 262 271 5.1E-14 T 10-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VF_A0882 3496be1da0791822b1c97331f8ff8355 392 PRINTS PR00735 Glycosyl hydrolase family 8 signature 72 85 5.1E-14 T 10-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VF_A0882 3496be1da0791822b1c97331f8ff8355 392 PRINTS PR00735 Glycosyl hydrolase family 8 signature 238 249 5.1E-14 T 10-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VF_A0882 3496be1da0791822b1c97331f8ff8355 392 Gene3D G3DSA:1.50.10.10 43 387 2.7E-119 T 10-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 VF_A0882 3496be1da0791822b1c97331f8ff8355 392 SUPERFAMILY SSF48208 38 377 8.84E-94 T 10-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 VF_0718 6d915d7506e5342478d9a59eadf3a7ed 301 Gene3D G3DSA:3.40.50.720 5 173 2.3E-54 T 10-10-2018 VF_0718 6d915d7506e5342478d9a59eadf3a7ed 301 Pfam PF02558 Ketopantoate reductase PanE/ApbA 7 149 8.3E-33 T 10-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain VF_0718 6d915d7506e5342478d9a59eadf3a7ed 301 Gene3D G3DSA:1.10.1040.10 175 301 1.6E-40 T 10-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VF_0718 6d915d7506e5342478d9a59eadf3a7ed 301 SUPERFAMILY SSF48179 175 297 7.48E-34 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VF_0718 6d915d7506e5342478d9a59eadf3a7ed 301 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 6 299 1.7E-82 T 10-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 VF_0718 6d915d7506e5342478d9a59eadf3a7ed 301 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 177 297 1.6E-34 T 10-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain VF_0718 6d915d7506e5342478d9a59eadf3a7ed 301 SUPERFAMILY SSF51735 6 172 3.76E-55 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0490 ba3b3689e239a5be1cdbbe49bf7e34f9 331 Pfam PF06742 Protein of unknown function (DUF1214) 228 316 3.5E-9 T 10-10-2018 IPR010621 Domain of unknown function DUF1214 VF_A0490 ba3b3689e239a5be1cdbbe49bf7e34f9 331 Pfam PF06863 Protein of unknown function (DUF1254) 49 156 1.4E-9 T 10-10-2018 IPR010679 Domain of unknown function DUF1254 VF_A0490 ba3b3689e239a5be1cdbbe49bf7e34f9 331 Gene3D G3DSA:2.60.120.600 187 331 6.5E-13 T 10-10-2018 IPR037049 Domain of unknown function DUF1214, C-terminal domain superfamily VF_A0490 ba3b3689e239a5be1cdbbe49bf7e34f9 331 SUPERFAMILY SSF160935 3 328 4.84E-56 T 10-10-2018 VF_1503 5b1a3e379081752c924fd573736a1b9b 467 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 252 431 2.7E-40 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1503 5b1a3e379081752c924fd573736a1b9b 467 Gene3D G3DSA:1.10.287.950 139 463 1.8E-63 T 10-10-2018 VF_1503 5b1a3e379081752c924fd573736a1b9b 467 SMART SM00283 205 466 2.5E-55 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1503 5b1a3e379081752c924fd573736a1b9b 467 SUPERFAMILY SSF58104 157 465 9.29E-65 T 10-10-2018 VF_1277 ac86fc0c54f55996eb954af22585a0dd 597 SMART SM00382 386 573 1.0E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1277 ac86fc0c54f55996eb954af22585a0dd 597 Pfam PF00664 ABC transporter transmembrane region 32 313 9.5E-33 T 10-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VF_1277 ac86fc0c54f55996eb954af22585a0dd 597 Gene3D G3DSA:1.20.1560.10 2 345 1.0E-57 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_1277 ac86fc0c54f55996eb954af22585a0dd 597 Gene3D G3DSA:3.40.50.300 352 597 4.3E-85 T 10-10-2018 VF_1277 ac86fc0c54f55996eb954af22585a0dd 597 SUPERFAMILY SSF90123 13 343 7.85E-59 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_1277 ac86fc0c54f55996eb954af22585a0dd 597 SUPERFAMILY SSF52540 356 593 2.66E-82 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1277 ac86fc0c54f55996eb954af22585a0dd 597 Pfam PF00005 ABC transporter 377 525 1.6E-34 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1277 ac86fc0c54f55996eb954af22585a0dd 597 ProSitePatterns PS00211 ABC transporters family signature. 497 511 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0090 c66c87dde15f652578fa90baa8dbe850 377 Gene3D G3DSA:2.60.20.10 240 318 9.3E-13 T 10-10-2018 VF_A0090 c66c87dde15f652578fa90baa8dbe850 377 SMART SM00247 240 319 0.002 T 10-10-2018 IPR001064 Beta/gamma crystallin VF_A0090 c66c87dde15f652578fa90baa8dbe850 377 SUPERFAMILY SSF49695 241 320 1.79E-11 T 10-10-2018 IPR011024 Gamma-crystallin-like VF_A0090 c66c87dde15f652578fa90baa8dbe850 377 Pfam PF01400 Astacin (Peptidase family M12A) 49 232 2.8E-43 T 10-10-2018 IPR001506 Peptidase M12A GO:0004222|GO:0006508 VF_A0090 c66c87dde15f652578fa90baa8dbe850 377 PRINTS PR00480 Astacin family signature 147 164 3.5E-20 T 10-10-2018 IPR001506 Peptidase M12A GO:0004222|GO:0006508 VF_A0090 c66c87dde15f652578fa90baa8dbe850 377 PRINTS PR00480 Astacin family signature 128 146 3.5E-20 T 10-10-2018 IPR001506 Peptidase M12A GO:0004222|GO:0006508 VF_A0090 c66c87dde15f652578fa90baa8dbe850 377 PRINTS PR00480 Astacin family signature 71 89 3.5E-20 T 10-10-2018 IPR001506 Peptidase M12A GO:0004222|GO:0006508 VF_A0090 c66c87dde15f652578fa90baa8dbe850 377 PRINTS PR00480 Astacin family signature 220 233 3.5E-20 T 10-10-2018 IPR001506 Peptidase M12A GO:0004222|GO:0006508 VF_A0090 c66c87dde15f652578fa90baa8dbe850 377 PRINTS PR00480 Astacin family signature 184 199 3.5E-20 T 10-10-2018 IPR001506 Peptidase M12A GO:0004222|GO:0006508 VF_A0090 c66c87dde15f652578fa90baa8dbe850 377 SMART SM00235 46 189 3.7E-29 T 10-10-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 VF_A0090 c66c87dde15f652578fa90baa8dbe850 377 SUPERFAMILY SSF55486 44 233 6.36E-44 T 10-10-2018 VF_A0090 c66c87dde15f652578fa90baa8dbe850 377 Gene3D G3DSA:3.40.390.10 13 235 3.7E-55 T 10-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 VF_A0090 c66c87dde15f652578fa90baa8dbe850 377 Gene3D G3DSA:3.30.160.280 319 377 4.3E-14 T 10-10-2018 VF_A0090 c66c87dde15f652578fa90baa8dbe850 377 Pfam PF00030 Beta/Gamma crystallin 241 318 1.3E-4 T 10-10-2018 IPR001064 Beta/gamma crystallin VF_A0438 3128b79a2e58e9d415d38554eca3d759 485 Pfam PF02378 Phosphotransferase system, EIIC 11 324 4.5E-70 T 10-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VF_A0438 3128b79a2e58e9d415d38554eca3d759 485 Gene3D G3DSA:3.30.1360.60 403 485 3.1E-25 T 10-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VF_A0438 3128b79a2e58e9d415d38554eca3d759 485 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 4 480 1.5E-190 T 10-10-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 VF_A0438 3128b79a2e58e9d415d38554eca3d759 485 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 383 468 4.9E-21 T 10-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 VF_A0438 3128b79a2e58e9d415d38554eca3d759 485 SUPERFAMILY SSF55604 408 484 2.09E-19 T 10-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VF_A0438 3128b79a2e58e9d415d38554eca3d759 485 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 421 438 - T 10-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VF_A0438 3128b79a2e58e9d415d38554eca3d759 485 Pfam PF00367 phosphotransferase system, EIIB 411 443 5.9E-15 T 10-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VF_1321 2d3528404f59dcf23e0dccf39121e96d 303 SUPERFAMILY SSF53850 89 298 2.48E-43 T 10-10-2018 VF_1321 2d3528404f59dcf23e0dccf39121e96d 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 2.7E-18 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1321 2d3528404f59dcf23e0dccf39121e96d 303 SUPERFAMILY SSF46785 6 113 6.21E-21 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1321 2d3528404f59dcf23e0dccf39121e96d 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 8.2E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1321 2d3528404f59dcf23e0dccf39121e96d 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 8.2E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1321 2d3528404f59dcf23e0dccf39121e96d 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 8.2E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1321 2d3528404f59dcf23e0dccf39121e96d 303 Gene3D G3DSA:3.40.190.10 92 291 8.9E-61 T 10-10-2018 VF_1321 2d3528404f59dcf23e0dccf39121e96d 303 Pfam PF03466 LysR substrate binding domain 91 294 1.6E-41 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1321 2d3528404f59dcf23e0dccf39121e96d 303 Gene3D G3DSA:1.10.10.10 4 90 1.9E-24 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1321 2d3528404f59dcf23e0dccf39121e96d 303 Gene3D G3DSA:3.40.190.10 164 266 8.9E-61 T 10-10-2018 VF_0881 666bb0faec94b575d3fd80c015e66c4b 401 Gene3D G3DSA:1.20.1720.10 18 396 4.5E-101 T 10-10-2018 VF_0881 666bb0faec94b575d3fd80c015e66c4b 401 SUPERFAMILY SSF103473 10 400 1.28E-65 T 10-10-2018 IPR036259 MFS transporter superfamily VF_0881 666bb0faec94b575d3fd80c015e66c4b 401 Pfam PF07690 Major Facilitator Superfamily 25 364 2.4E-52 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_0881 666bb0faec94b575d3fd80c015e66c4b 401 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 16 396 3.8E-118 T 10-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 VF_A0991 a88c7acfbc85ac9a5117c8bc1bf714cf 505 Pfam PF10022 Uncharacterized protein conserved in bacteria (DUF2264) 74 418 4.9E-89 T 10-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 VF_A0991 a88c7acfbc85ac9a5117c8bc1bf714cf 505 PIRSF PIRSF014753 36 505 4.2E-134 T 10-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 VF_2521 4780a5edcfc93a7aabb254218c749752 671 Gene3D G3DSA:3.40.50.300 4 266 1.1E-98 T 10-10-2018 VF_2521 4780a5edcfc93a7aabb254218c749752 671 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 265 7.9E-77 T 10-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 VF_2521 4780a5edcfc93a7aabb254218c749752 671 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 2 670 0.0 T 10-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 VF_2521 4780a5edcfc93a7aabb254218c749752 671 Gene3D G3DSA:1.10.10.160 108 181 1.1E-98 T 10-10-2018 IPR013986 DExx box DNA helicase domain superfamily VF_2521 4780a5edcfc93a7aabb254218c749752 671 Gene3D G3DSA:3.40.50.300 274 634 2.9E-126 T 10-10-2018 VF_2521 4780a5edcfc93a7aabb254218c749752 671 SUPERFAMILY SSF52540 1 641 1.19E-164 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2521 4780a5edcfc93a7aabb254218c749752 671 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 1 670 41.043 T 10-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 VF_2521 4780a5edcfc93a7aabb254218c749752 671 Gene3D G3DSA:1.10.486.10 377 546 2.9E-126 T 10-10-2018 VF_2521 4780a5edcfc93a7aabb254218c749752 671 Pfam PF13361 UvrD-like helicase C-terminal domain 271 615 2.0E-75 T 10-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 VF_1708 491455b13dd28b530b9e617eb98b9231 560 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 10-10-2018 IPR020845 AMP-binding, conserved site VF_1708 491455b13dd28b530b9e617eb98b9231 560 Gene3D G3DSA:3.30.300.310 458 560 1.3E-30 T 10-10-2018 VF_1708 491455b13dd28b530b9e617eb98b9231 560 Gene3D G3DSA:3.40.50.12780 11 457 3.6E-117 T 10-10-2018 VF_1708 491455b13dd28b530b9e617eb98b9231 560 SUPERFAMILY SSF56801 17 556 3.66E-150 T 10-10-2018 VF_1708 491455b13dd28b530b9e617eb98b9231 560 Pfam PF13193 AMP-binding enzyme C-terminal domain 470 544 7.3E-18 T 10-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VF_1708 491455b13dd28b530b9e617eb98b9231 560 Pfam PF00501 AMP-binding enzyme 29 461 4.0E-107 T 10-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VF_0365 f03dd36f86ec5b8a7768b801a2710a1b 187 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 1.9E-7 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0365 f03dd36f86ec5b8a7768b801a2710a1b 187 Gene3D G3DSA:3.30.700.10 7 186 4.5E-12 T 10-10-2018 VF_0365 f03dd36f86ec5b8a7768b801a2710a1b 187 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 27 1.5E-7 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0365 f03dd36f86ec5b8a7768b801a2710a1b 187 SUPERFAMILY SSF54523 7 126 1.18E-13 T 10-10-2018 VF_0365 f03dd36f86ec5b8a7768b801a2710a1b 187 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_1727 edbfdde60efb0c45bd324deb76e80dd8 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 189 211 2.1E-30 T 10-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VF_1727 edbfdde60efb0c45bd324deb76e80dd8 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 47 69 2.1E-30 T 10-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VF_1727 edbfdde60efb0c45bd324deb76e80dd8 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 222 234 2.1E-30 T 10-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VF_1727 edbfdde60efb0c45bd324deb76e80dd8 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 168 183 2.1E-30 T 10-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VF_1727 edbfdde60efb0c45bd324deb76e80dd8 426 SUPERFAMILY SSF52374 4 329 9.64E-100 T 10-10-2018 VF_1727 edbfdde60efb0c45bd324deb76e80dd8 426 Gene3D G3DSA:3.10.290.10 332 426 1.3E-27 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VF_1727 edbfdde60efb0c45bd324deb76e80dd8 426 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 5 425 44.368 T 10-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 VF_1727 edbfdde60efb0c45bd324deb76e80dd8 426 Pfam PF00579 tRNA synthetases class I (W and Y) 36 329 3.1E-85 T 10-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_1727 edbfdde60efb0c45bd324deb76e80dd8 426 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 4 422 1.1E-128 T 10-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VF_1727 edbfdde60efb0c45bd324deb76e80dd8 426 SUPERFAMILY SSF55174 327 425 5.1E-19 T 10-10-2018 VF_1727 edbfdde60efb0c45bd324deb76e80dd8 426 Gene3D G3DSA:1.10.240.10 229 331 6.0E-34 T 10-10-2018 VF_1727 edbfdde60efb0c45bd324deb76e80dd8 426 Gene3D G3DSA:3.40.50.620 1 228 3.6E-89 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0906 520799a4fb8c24baf41f3d4e3e6c744c 198 Gene3D G3DSA:2.50.20.10 17 198 4.8E-43 T 10-10-2018 VF_0906 520799a4fb8c24baf41f3d4e3e6c744c 198 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 6 198 7.4E-61 T 10-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 VF_0906 520799a4fb8c24baf41f3d4e3e6c744c 198 SUPERFAMILY SSF89392 21 198 4.71E-50 T 10-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX VF_0906 520799a4fb8c24baf41f3d4e3e6c744c 198 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 4 197 30.163 T 10-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 VF_0906 520799a4fb8c24baf41f3d4e3e6c744c 198 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 30 186 7.0E-50 T 10-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like VF_2535 4ebdc7bf2108dbbf5743a29874208a22 269 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 115 191 1.9E-13 T 10-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase VF_2535 4ebdc7bf2108dbbf5743a29874208a22 269 Gene3D G3DSA:3.40.50.10860 4 254 6.2E-85 T 10-10-2018 VF_2535 4ebdc7bf2108dbbf5743a29874208a22 269 SUPERFAMILY SSF53223 1 101 2.24E-31 T 10-10-2018 VF_2535 4ebdc7bf2108dbbf5743a29874208a22 269 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 3 265 3.1E-86 T 10-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 VF_2535 4ebdc7bf2108dbbf5743a29874208a22 269 SUPERFAMILY SSF51735 102 268 2.13E-38 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_2535 4ebdc7bf2108dbbf5743a29874208a22 269 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 1 269 31.918 T 10-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 VF_2535 4ebdc7bf2108dbbf5743a29874208a22 269 Gene3D G3DSA:3.40.50.720 115 235 6.2E-85 T 10-10-2018 VF_2535 4ebdc7bf2108dbbf5743a29874208a22 269 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 6 88 5.4E-25 T 10-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 VF_A0810 1cc07f863f90b0b636c4fb4756957800 817 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 11 812 0.0 T 10-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 VF_A0810 1cc07f863f90b0b636c4fb4756957800 817 Pfam PF00343 Carbohydrate phosphorylase 100 812 0.0 T 10-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 VF_A0810 1cc07f863f90b0b636c4fb4756957800 817 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 656 668 - T 10-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 VF_A0810 1cc07f863f90b0b636c4fb4756957800 817 SUPERFAMILY SSF53756 8 815 0.0 T 10-10-2018 VF_A0810 1cc07f863f90b0b636c4fb4756957800 817 Gene3D G3DSA:3.40.50.2000 478 805 0.0 T 10-10-2018 VF_A0810 1cc07f863f90b0b636c4fb4756957800 817 Gene3D G3DSA:3.40.50.2000 20 812 0.0 T 10-10-2018 VF_A0810 1cc07f863f90b0b636c4fb4756957800 817 PIRSF PIRSF000460 1 817 6.7E-209 T 10-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.3E-25 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.3E-25 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 1.3E-25 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 PRINTS PR00702 Acriflavin resistance protein family signature 468 491 1.3E-25 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 1.3E-25 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 1.3E-25 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 Gene3D G3DSA:1.20.1640.10 504 1005 1.3E-241 T 10-10-2018 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 Gene3D G3DSA:3.30.70.1430 555 653 1.3E-241 T 10-10-2018 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 Gene3D G3DSA:3.30.2090.10 181 272 1.3E-241 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 SUPERFAMILY SSF82693 41 137 4.97E-17 T 10-10-2018 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 Gene3D G3DSA:1.20.1640.10 12 503 1.3E-241 T 10-10-2018 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 9.6E-164 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 Gene3D G3DSA:3.30.2090.10 705 795 1.3E-241 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 Gene3D G3DSA:3.30.70.1320 138 330 1.3E-241 T 10-10-2018 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 SUPERFAMILY SSF82866 296 495 5.36E-32 T 10-10-2018 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 SUPERFAMILY SSF82693 138 324 2.88E-20 T 10-10-2018 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 Gene3D G3DSA:3.30.70.1430 40 803 1.3E-241 T 10-10-2018 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 SUPERFAMILY SSF82866 791 1011 7.85E-45 T 10-10-2018 VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 SUPERFAMILY SSF82714 187 269 1.1E-11 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 SUPERFAMILY SSF82714 707 789 4.71E-9 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0357 885d4d843a06dc91056083ef4ce41c8b 1016 Gene3D G3DSA:3.30.70.1440 654 853 1.3E-241 T 10-10-2018 VF_0830 fc9c919eef4d69469235a01e0040114c 297 Pfam PF01297 Zinc-uptake complex component A periplasmic 25 294 4.2E-56 T 10-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 VF_0830 fc9c919eef4d69469235a01e0040114c 297 Gene3D G3DSA:3.40.50.1980 24 184 2.9E-48 T 10-10-2018 VF_0830 fc9c919eef4d69469235a01e0040114c 297 Gene3D G3DSA:3.40.50.1980 185 297 5.2E-35 T 10-10-2018 VF_0830 fc9c919eef4d69469235a01e0040114c 297 PRINTS PR00690 Adhesin family signature 66 83 5.7E-7 T 10-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 VF_0830 fc9c919eef4d69469235a01e0040114c 297 PRINTS PR00690 Adhesin family signature 53 66 5.7E-7 T 10-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 VF_0830 fc9c919eef4d69469235a01e0040114c 297 PRINTS PR00690 Adhesin family signature 184 205 5.7E-7 T 10-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 VF_0830 fc9c919eef4d69469235a01e0040114c 297 SUPERFAMILY SSF53807 21 296 3.29E-74 T 10-10-2018 VF_1553 1d63c82373b34e13e5e39adce5047651 197 Pfam PF13435 Cytochrome c554 and c-prime 37 88 8.4E-4 T 10-10-2018 IPR023155 Cytochrome c-552/4 VF_1553 1d63c82373b34e13e5e39adce5047651 197 Pfam PF13435 Cytochrome c554 and c-prime 113 160 0.0071 T 10-10-2018 IPR023155 Cytochrome c-552/4 VF_1553 1d63c82373b34e13e5e39adce5047651 197 Gene3D G3DSA:1.10.1130.10 105 192 2.1E-6 T 10-10-2018 VF_1553 1d63c82373b34e13e5e39adce5047651 197 SUPERFAMILY SSF48695 6 190 3.26E-26 T 10-10-2018 IPR036280 Multiheme cytochrome superfamily VF_1553 1d63c82373b34e13e5e39adce5047651 197 TIGRFAM TIGR03146 cyt_nit_nrfB: cytochrome c nitrite reductase, pentaheme subunit 42 189 9.6E-65 T 10-10-2018 IPR017564 Cytochrome c nitrite reductase, pentahaem subunit GO:0006807|GO:0020037|GO:0042597 VF_A0213 528123957a9a7985f5b6a48e519822de 512 SUPERFAMILY SSF53649 23 460 7.12E-107 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_A0213 528123957a9a7985f5b6a48e519822de 512 Pfam PF00884 Sulfatase 27 367 2.1E-65 T 10-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VF_A0213 528123957a9a7985f5b6a48e519822de 512 Gene3D G3DSA:3.40.720.10 23 445 3.1E-95 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VF_0323 8e17e97463cfd3340292ff2ef04abf1c 204 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 30 202 38.144 T 10-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 VF_0323 8e17e97463cfd3340292ff2ef04abf1c 204 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 14 197 1.5E-82 T 10-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 VF_0323 8e17e97463cfd3340292ff2ef04abf1c 204 Gene3D G3DSA:3.40.50.300 9 204 4.9E-78 T 10-10-2018 VF_0323 8e17e97463cfd3340292ff2ef04abf1c 204 Pfam PF01583 Adenylylsulphate kinase 31 183 1.2E-71 T 10-10-2018 VF_0323 8e17e97463cfd3340292ff2ef04abf1c 204 SUPERFAMILY SSF52540 23 199 9.69E-38 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A1189 3b8d3da67be51a474167705b9a567178 350 TIGRFAM TIGR00433 bioB: biotin synthase 15 310 3.4E-124 T 10-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VF_A1189 3b8d3da67be51a474167705b9a567178 350 Gene3D G3DSA:3.20.20.70 4 315 1.9E-131 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A1189 3b8d3da67be51a474167705b9a567178 350 SUPERFAMILY SSF102114 5 310 1.16E-91 T 10-10-2018 VF_A1189 3b8d3da67be51a474167705b9a567178 350 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 310 3.6E-20 T 10-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VF_A1189 3b8d3da67be51a474167705b9a567178 350 Pfam PF04055 Radical SAM superfamily 50 200 6.1E-15 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_A1189 3b8d3da67be51a474167705b9a567178 350 PIRSF PIRSF001619 1 319 4.9E-137 T 10-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VF_A1189 3b8d3da67be51a474167705b9a567178 350 Hamap MF_01694 Biotin synthase [bioB]. 5 313 41.951 T 10-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VF_A1189 3b8d3da67be51a474167705b9a567178 350 SMART SM00729 43 255 3.5E-39 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VF_A1189 3b8d3da67be51a474167705b9a567178 350 SMART SM00876 220 312 2.0E-46 T 10-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VF_2049 111f4aa06485877e0f0cff6fae95587c 610 PIRSF PIRSF001024 126 605 3.6E-55 T 10-10-2018 IPR013777 Alpha-amylase-like GO:0004556|GO:0005509|GO:0005975 VF_2049 111f4aa06485877e0f0cff6fae95587c 610 SUPERFAMILY SSF81296 2 107 3.5E-20 T 10-10-2018 IPR014756 Immunoglobulin E-set VF_2049 111f4aa06485877e0f0cff6fae95587c 610 Gene3D G3DSA:3.20.20.80 153 526 6.8E-150 T 10-10-2018 VF_2049 111f4aa06485877e0f0cff6fae95587c 610 SMART SM00642 159 525 1.8E-110 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_2049 111f4aa06485877e0f0cff6fae95587c 610 Pfam PF16657 Maltogenic Amylase, C-terminal domain 539 606 4.8E-8 T 10-10-2018 IPR032091 Maltogenic Amylase, C-terminal VF_2049 111f4aa06485877e0f0cff6fae95587c 610 Gene3D G3DSA:2.60.40.1180 535 610 1.1E-22 T 10-10-2018 IPR013780 Glycosyl hydrolase, all-beta VF_2049 111f4aa06485877e0f0cff6fae95587c 610 Pfam PF00128 Alpha amylase, catalytic domain 193 497 3.4E-80 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_2049 111f4aa06485877e0f0cff6fae95587c 610 Pfam PF02903 Alpha amylase, N-terminal ig-like domain 1 141 1.3E-27 T 10-10-2018 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain GO:0004553|GO:0005975 VF_2049 111f4aa06485877e0f0cff6fae95587c 610 SUPERFAMILY SSF51011 536 609 1.3E-14 T 10-10-2018 VF_2049 111f4aa06485877e0f0cff6fae95587c 610 Gene3D G3DSA:3.90.400.10 266 327 6.8E-150 T 10-10-2018 VF_2049 111f4aa06485877e0f0cff6fae95587c 610 SUPERFAMILY SSF51445 81 532 3.22E-120 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_2049 111f4aa06485877e0f0cff6fae95587c 610 Gene3D G3DSA:2.60.40.10 2 145 8.4E-36 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_1212 dc68491f47cf4ec19cb8e9da766ec4bc 131 SUPERFAMILY SSF54593 2 127 6.19E-25 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_1212 dc68491f47cf4ec19cb8e9da766ec4bc 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 123 2.9E-12 T 10-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VF_1212 dc68491f47cf4ec19cb8e9da766ec4bc 131 Gene3D G3DSA:3.10.180.10 1 128 3.6E-30 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_1212 dc68491f47cf4ec19cb8e9da766ec4bc 131 ProSitePatterns PS00935 Glyoxalase I signature 2. 67 79 - T 10-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 VF_0704 27d006a66605919eaaae2704d06f6285 155 Pfam PF01029 NusB family 11 149 1.1E-35 T 10-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 VF_0704 27d006a66605919eaaae2704d06f6285 155 Gene3D G3DSA:1.10.940.10 3 155 4.3E-48 T 10-10-2018 IPR035926 NusB-like superfamily VF_0704 27d006a66605919eaaae2704d06f6285 155 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 8 153 23.056 T 10-10-2018 IPR011605 NusB antitermination factor GO:0006353 VF_0704 27d006a66605919eaaae2704d06f6285 155 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 10 150 2.0E-43 T 10-10-2018 IPR011605 NusB antitermination factor GO:0006353 VF_0704 27d006a66605919eaaae2704d06f6285 155 SUPERFAMILY SSF48013 7 153 9.16E-39 T 10-10-2018 IPR035926 NusB-like superfamily VF_0443 8c3b4d3b21bb127bdce47fe8e4a04a81 358 Pfam PF01116 Fructose-bisphosphate aldolase class-II 17 354 9.4E-88 T 10-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VF_0443 8c3b4d3b21bb127bdce47fe8e4a04a81 358 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 14 356 2.0E-107 T 10-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VF_0443 8c3b4d3b21bb127bdce47fe8e4a04a81 358 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 171 182 - T 10-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VF_0443 8c3b4d3b21bb127bdce47fe8e4a04a81 358 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 100 111 - T 10-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VF_0443 8c3b4d3b21bb127bdce47fe8e4a04a81 358 SUPERFAMILY SSF51569 4 356 1.19E-126 T 10-10-2018 VF_0443 8c3b4d3b21bb127bdce47fe8e4a04a81 358 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 4 357 5.7E-174 T 10-10-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 VF_0443 8c3b4d3b21bb127bdce47fe8e4a04a81 358 PIRSF PIRSF001359 13 358 3.0E-92 T 10-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VF_0443 8c3b4d3b21bb127bdce47fe8e4a04a81 358 Gene3D G3DSA:3.20.20.70 2 358 1.7E-143 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1333 4ea7fe011c4e4435e4c0a54d61c13bdd 318 SUPERFAMILY SSF53850 97 298 5.61E-17 T 10-10-2018 VF_1333 4ea7fe011c4e4435e4c0a54d61c13bdd 318 SUPERFAMILY SSF46785 9 90 1.89E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1333 4ea7fe011c4e4435e4c0a54d61c13bdd 318 Gene3D G3DSA:3.40.190.10 169 265 1.7E-21 T 10-10-2018 VF_1333 4ea7fe011c4e4435e4c0a54d61c13bdd 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 69 2.8E-18 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1333 4ea7fe011c4e4435e4c0a54d61c13bdd 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 4.2E-9 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1333 4ea7fe011c4e4435e4c0a54d61c13bdd 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 4.2E-9 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1333 4ea7fe011c4e4435e4c0a54d61c13bdd 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 4.2E-9 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1333 4ea7fe011c4e4435e4c0a54d61c13bdd 318 Gene3D G3DSA:3.40.190.10 105 290 1.7E-21 T 10-10-2018 VF_1333 4ea7fe011c4e4435e4c0a54d61c13bdd 318 Gene3D G3DSA:1.10.10.10 11 99 2.0E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1333 4ea7fe011c4e4435e4c0a54d61c13bdd 318 Pfam PF03466 LysR substrate binding domain 96 294 1.9E-11 T 10-10-2018 IPR005119 LysR, substrate-binding VF_0638 49e893518b4ea8b589e499b9e83997dd 517 SUPERFAMILY SSF54810 397 517 1.96E-51 T 10-10-2018 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 7.3E-7 T 10-10-2018 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 7.3E-7 T 10-10-2018 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 7.3E-7 T 10-10-2018 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 1.3E-7 T 10-10-2018 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 1.3E-7 T 10-10-2018 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 1.3E-7 T 10-10-2018 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 Gene3D G3DSA:3.30.300.10 398 517 3.0E-51 T 10-10-2018 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 SUPERFAMILY SSF52317 9 200 2.45E-58 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_0638 49e893518b4ea8b589e499b9e83997dd 517 Pfam PF00117 Glutamine amidotransferase class-I 12 192 3.5E-43 T 10-10-2018 IPR017926 Glutamine amidotransferase VF_0638 49e893518b4ea8b589e499b9e83997dd 517 Pfam PF02540 NAD synthase 212 252 9.7E-8 T 10-10-2018 IPR022310 NAD/GMP synthase VF_0638 49e893518b4ea8b589e499b9e83997dd 517 PRINTS PR00097 Anthranilate synthase component II signature 54 63 3.8E-6 T 10-10-2018 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 PRINTS PR00097 Anthranilate synthase component II signature 81 92 3.8E-6 T 10-10-2018 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 PRINTS PR00097 Anthranilate synthase component II signature 169 182 3.8E-6 T 10-10-2018 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 517 56.589 T 10-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 Gene3D G3DSA:3.40.50.880 6 201 4.2E-56 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_0638 49e893518b4ea8b589e499b9e83997dd 517 SUPERFAMILY SSF52402 189 412 2.43E-59 T 10-10-2018 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 Pfam PF00958 GMP synthase C terminal domain 425 516 9.9E-44 T 10-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 Gene3D G3DSA:3.40.50.620 202 397 6.9E-75 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0638 49e893518b4ea8b589e499b9e83997dd 517 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 197 1.3E-85 T 10-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 VF_0638 49e893518b4ea8b589e499b9e83997dd 517 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 205 517 5.5E-156 T 10-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 VF_1062 8d2e9b1c82d659ed5f537e0bca64f93f 418 SUPERFAMILY SSF52540 1 417 4.89E-119 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1062 8d2e9b1c82d659ed5f537e0bca64f93f 418 Gene3D G3DSA:3.40.440.10 6 255 5.5E-73 T 10-10-2018 VF_1062 8d2e9b1c82d659ed5f537e0bca64f93f 418 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 418 140.4 T 10-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VF_1062 8d2e9b1c82d659ed5f537e0bca64f93f 418 Gene3D G3DSA:3.90.170.10 266 418 9.5E-49 T 10-10-2018 VF_1062 8d2e9b1c82d659ed5f537e0bca64f93f 418 SMART SM00788 3 417 1.3E-176 T 10-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VF_1062 8d2e9b1c82d659ed5f537e0bca64f93f 418 Pfam PF00709 Adenylosuccinate synthetase 4 416 3.0E-130 T 10-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VF_1062 8d2e9b1c82d659ed5f537e0bca64f93f 418 Gene3D G3DSA:1.10.300.10 99 200 5.5E-73 T 10-10-2018 VF_A0489 405a61d1652cd75ed73ea3a76e507572 310 Gene3D G3DSA:3.40.190.10 97 290 5.0E-12 T 10-10-2018 VF_A0489 405a61d1652cd75ed73ea3a76e507572 310 Gene3D G3DSA:1.10.10.10 3 91 3.1E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0489 405a61d1652cd75ed73ea3a76e507572 310 SUPERFAMILY SSF46785 7 90 8.17E-15 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0489 405a61d1652cd75ed73ea3a76e507572 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 1.5E-12 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0489 405a61d1652cd75ed73ea3a76e507572 310 SUPERFAMILY SSF53850 97 292 1.99E-15 T 10-10-2018 VF_A0489 405a61d1652cd75ed73ea3a76e507572 310 Gene3D G3DSA:3.40.190.10 175 277 5.0E-12 T 10-10-2018 VF_A0489 405a61d1652cd75ed73ea3a76e507572 310 Pfam PF03466 LysR substrate binding domain 99 243 1.4E-10 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1170 612a57a076cf90c4304a4a8b0d41a6c8 143 SUPERFAMILY SSF102462 8 143 1.47E-35 T 10-10-2018 IPR023476 Peptidyl-tRNA hydrolase II domain superfamily MetaCyc: PWY-6308 VF_1170 612a57a076cf90c4304a4a8b0d41a6c8 143 Gene3D G3DSA:3.40.1490.10 8 143 3.4E-12 T 10-10-2018 IPR023476 Peptidyl-tRNA hydrolase II domain superfamily MetaCyc: PWY-6308 VF_1170 612a57a076cf90c4304a4a8b0d41a6c8 143 PIRSF PIRSF033736 4 143 1.8E-26 T 10-10-2018 IPR017021 Uncharacterised conserved protein UCP033763 VF_1170 612a57a076cf90c4304a4a8b0d41a6c8 143 Pfam PF09391 Protein of unknown function (DUF2000) 10 143 2.8E-38 T 10-10-2018 IPR018988 Protein of unknown function DUF2000 VF_1072 e840fe833b5f4e5c9c8bddee8594abd4 312 Gene3D G3DSA:1.10.10.10 1 90 1.1E-25 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1072 e840fe833b5f4e5c9c8bddee8594abd4 312 SUPERFAMILY SSF46785 6 83 4.99E-16 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1072 e840fe833b5f4e5c9c8bddee8594abd4 312 SUPERFAMILY SSF53850 92 299 4.16E-21 T 10-10-2018 VF_1072 e840fe833b5f4e5c9c8bddee8594abd4 312 Pfam PF03466 LysR substrate binding domain 95 302 2.2E-12 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1072 e840fe833b5f4e5c9c8bddee8594abd4 312 Gene3D G3DSA:3.40.190.10 92 296 6.5E-23 T 10-10-2018 VF_1072 e840fe833b5f4e5c9c8bddee8594abd4 312 Gene3D G3DSA:3.40.190.10 173 273 6.5E-23 T 10-10-2018 VF_1072 e840fe833b5f4e5c9c8bddee8594abd4 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 4.9E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1072 e840fe833b5f4e5c9c8bddee8594abd4 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 4.9E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1072 e840fe833b5f4e5c9c8bddee8594abd4 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 4.9E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1072 e840fe833b5f4e5c9c8bddee8594abd4 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 1.1E-13 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0007 21569df87827ce1c37e80bea72f871df 223 SUPERFAMILY SSF161098 13 203 1.83E-43 T 10-10-2018 IPR035906 MetI-like superfamily VF_0007 21569df87827ce1c37e80bea72f871df 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 216 1.8E-17 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_0007 21569df87827ce1c37e80bea72f871df 223 Gene3D G3DSA:1.10.3720.10 1 222 1.3E-52 T 10-10-2018 IPR035906 MetI-like superfamily VF_0007 21569df87827ce1c37e80bea72f871df 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 112 2.4E-24 T 10-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VF_1755 fc1702e88863a3feddee00e891542339 234 SUPERFAMILY SSF51366 1 226 2.52E-76 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VF_1755 fc1702e88863a3feddee00e891542339 234 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 3 231 39.6 T 10-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_1755 fc1702e88863a3feddee00e891542339 234 Gene3D G3DSA:3.20.20.70 1 229 2.2E-86 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1755 fc1702e88863a3feddee00e891542339 234 SMART SM00934 5 226 2.6E-101 T 10-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_1755 fc1702e88863a3feddee00e891542339 234 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 225 2.8E-53 T 10-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_1755 fc1702e88863a3feddee00e891542339 234 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 6 226 1.2E-57 T 10-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_1755 fc1702e88863a3feddee00e891542339 234 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 57 70 - T 10-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_A0849 8f797cfcc231d515b0ee5c12683af28e 286 Gene3D G3DSA:3.40.30.10 18 254 9.9E-110 T 10-10-2018 VF_A0849 8f797cfcc231d515b0ee5c12683af28e 286 Pfam PF02798 Glutathione S-transferase, N-terminal domain 46 125 7.8E-10 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VF_A0849 8f797cfcc231d515b0ee5c12683af28e 286 Gene3D G3DSA:1.20.1050.10 132 248 9.9E-110 T 10-10-2018 VF_A0849 8f797cfcc231d515b0ee5c12683af28e 286 Pfam PF13410 Glutathione S-transferase, C-terminal domain 180 242 1.7E-6 T 10-10-2018 VF_A0849 8f797cfcc231d515b0ee5c12683af28e 286 SUPERFAMILY SSF47616 116 258 2.37E-30 T 10-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VF_A0849 8f797cfcc231d515b0ee5c12683af28e 286 SUPERFAMILY SSF52833 37 130 4.3E-18 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_2255 5d740d9980cf15d51219560ba4793179 206 Pfam PF13505 Outer membrane protein beta-barrel domain 8 206 4.8E-16 T 10-10-2018 IPR027385 Outer membrane protein beta-barrel VF_2255 5d740d9980cf15d51219560ba4793179 206 SUPERFAMILY SSF56925 28 206 3.92E-21 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VF_2255 5d740d9980cf15d51219560ba4793179 206 Gene3D G3DSA:2.40.160.20 27 206 3.3E-23 T 10-10-2018 VF_1968 2d9b25246ed4842f06f302055901355a 111 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 103 1.1E-31 T 10-10-2018 IPR003849 Preprotein translocase YajC VF_1968 2d9b25246ed4842f06f302055901355a 111 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 6.5E-16 T 10-10-2018 IPR003849 Preprotein translocase YajC VF_1968 2d9b25246ed4842f06f302055901355a 111 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 6.5E-16 T 10-10-2018 IPR003849 Preprotein translocase YajC VF_1968 2d9b25246ed4842f06f302055901355a 111 Pfam PF02699 Preprotein translocase subunit 23 100 1.4E-28 T 10-10-2018 IPR003849 Preprotein translocase YajC VF_1968 2d9b25246ed4842f06f302055901355a 111 SMART SM01323 19 103 1.1E-41 T 10-10-2018 IPR003849 Preprotein translocase YajC VF_1974 eb22588b9797d49bfe13c3e2aaae1c57 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 2.5E-16 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1974 eb22588b9797d49bfe13c3e2aaae1c57 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.3E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1974 eb22588b9797d49bfe13c3e2aaae1c57 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.3E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1974 eb22588b9797d49bfe13c3e2aaae1c57 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.3E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1974 eb22588b9797d49bfe13c3e2aaae1c57 299 SUPERFAMILY SSF53850 94 298 5.94E-36 T 10-10-2018 VF_1974 eb22588b9797d49bfe13c3e2aaae1c57 299 Gene3D G3DSA:3.40.190.10 166 267 8.5E-56 T 10-10-2018 VF_1974 eb22588b9797d49bfe13c3e2aaae1c57 299 Gene3D G3DSA:3.40.190.10 96 296 8.5E-56 T 10-10-2018 VF_1974 eb22588b9797d49bfe13c3e2aaae1c57 299 Pfam PF03466 LysR substrate binding domain 93 295 5.5E-39 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1974 eb22588b9797d49bfe13c3e2aaae1c57 299 Gene3D G3DSA:1.10.10.10 2 87 1.2E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1974 eb22588b9797d49bfe13c3e2aaae1c57 299 SUPERFAMILY SSF46785 4 115 3.36E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0278 e3d47ffd489ddb036b571839a02bf908 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 3.3E-40 T 10-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0278 e3d47ffd489ddb036b571839a02bf908 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.224 T 10-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0278 e3d47ffd489ddb036b571839a02bf908 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 2.8E-44 T 10-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0278 e3d47ffd489ddb036b571839a02bf908 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 10-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0278 e3d47ffd489ddb036b571839a02bf908 103 SUPERFAMILY SSF141091 1 102 9.68E-39 T 10-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1670 9f48a5722ecef94aa39534633b8ccca1 264 Pfam PF12697 Alpha/beta hydrolase family 19 252 9.5E-17 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_1670 9f48a5722ecef94aa39534633b8ccca1 264 Gene3D G3DSA:3.40.50.1820 9 262 2.7E-61 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_1670 9f48a5722ecef94aa39534633b8ccca1 264 SUPERFAMILY SSF53474 13 262 4.25E-46 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_1670 9f48a5722ecef94aa39534633b8ccca1 264 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 16 261 2.0E-87 T 10-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 VF_1670 9f48a5722ecef94aa39534633b8ccca1 264 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 15 261 35.551 T 10-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 VF_A0414 123d4131b3966b9b1741a50e9a68d54d 776 Pfam PF13654 AAA domain 25 539 4.4E-183 T 10-10-2018 VF_A0414 123d4131b3966b9b1741a50e9a68d54d 776 Gene3D G3DSA:3.30.230.10 542 776 6.3E-91 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_A0414 123d4131b3966b9b1741a50e9a68d54d 776 SUPERFAMILY SSF52540 30 538 1.04E-12 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0414 123d4131b3966b9b1741a50e9a68d54d 776 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 649 750 1.7E-8 T 10-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 VF_A0414 123d4131b3966b9b1741a50e9a68d54d 776 Gene3D G3DSA:3.40.50.300 10 192 1.0E-26 T 10-10-2018 VF_A0414 123d4131b3966b9b1741a50e9a68d54d 776 Gene3D G3DSA:3.40.50.300 249 449 3.0E-56 T 10-10-2018 VF_A0414 123d4131b3966b9b1741a50e9a68d54d 776 SUPERFAMILY SSF54211 565 757 1.1E-34 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_A0414 123d4131b3966b9b1741a50e9a68d54d 776 Gene3D G3DSA:1.10.8.60 450 536 1.0E-12 T 10-10-2018 VF_A0414 123d4131b3966b9b1741a50e9a68d54d 776 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 676 695 1.8E-5 T 10-10-2018 VF_A0414 123d4131b3966b9b1741a50e9a68d54d 776 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 706 724 1.8E-5 T 10-10-2018 VF_A0414 123d4131b3966b9b1741a50e9a68d54d 776 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 646 665 1.8E-5 T 10-10-2018 VF_1408 407efee1aa3235f378b5af2d054dd897 303 Pfam PF00480 ROK family 2 300 3.8E-69 T 10-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VF_1408 407efee1aa3235f378b5af2d054dd897 303 Gene3D G3DSA:3.30.420.40 4 297 9.9E-98 T 10-10-2018 VF_1408 407efee1aa3235f378b5af2d054dd897 303 Hamap MF_01271 N-acetyl-D-glucosamine kinase [nagK]. 1 303 62.144 T 10-10-2018 IPR023505 N-acetyl-D-glucosamine kinase GO:0045127 KEGG: 00520+2.7.1.59|MetaCyc: PWY-6517|MetaCyc: PWY-6906 VF_1408 407efee1aa3235f378b5af2d054dd897 303 Gene3D G3DSA:3.30.420.40 119 290 9.9E-98 T 10-10-2018 VF_1408 407efee1aa3235f378b5af2d054dd897 303 SUPERFAMILY SSF53067 1 299 4.08E-55 T 10-10-2018 VF_1408 407efee1aa3235f378b5af2d054dd897 303 ProSitePatterns PS01125 ROK family signature. 130 157 - T 10-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VF_A0404 a2f0c5856a9259d4a42f20990915177e 454 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 41 426 5.5E-117 T 10-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 VF_A0404 a2f0c5856a9259d4a42f20990915177e 454 Pfam PF02386 Cation transport protein 48 433 1.6E-50 T 10-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 584 33.037 T 10-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 SUPERFAMILY SSF55681 108 582 5.94E-98 T 10-10-2018 VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 Gene3D G3DSA:3.30.930.10 118 578 1.0E-194 T 10-10-2018 VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 582 4.8E-263 T 10-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 2.0E-26 T 10-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 2.0E-26 T 10-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 2.0E-26 T 10-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 2.0E-26 T 10-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 SUPERFAMILY SSF55261 288 419 1.11E-46 T 10-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 2.5E-16 T 10-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 Pfam PF02938 GAD domain 307 406 7.1E-32 T 10-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 Gene3D G3DSA:2.40.50.140 1 106 3.7E-34 T 10-10-2018 VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 SUPERFAMILY SSF50249 1 105 7.05E-34 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 Gene3D G3DSA:3.30.1360.30 271 420 1.0E-194 T 10-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 VF_0949 9eefbffe5687539fac1ba3a575e97fb7 591 Pfam PF00152 tRNA synthetases class II (D, K and N) 117 558 2.9E-103 T 10-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_A0324 9896a43c73211a91771a60750abdf847 428 SUPERFAMILY SSF52833 308 403 1.98E-12 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_A0324 9896a43c73211a91771a60750abdf847 428 Gene3D G3DSA:3.40.30.10 309 424 8.4E-9 T 10-10-2018 VF_A0324 9896a43c73211a91771a60750abdf847 428 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 33 238 5.3E-12 T 10-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 VF_A0324 9896a43c73211a91771a60750abdf847 428 Pfam PF13899 Thioredoxin-like 322 398 7.5E-11 T 10-10-2018 VF_0038 f096caaaa83aed745981ffde62796e54 597 Gene3D G3DSA:3.90.230.10 300 593 6.4E-93 T 10-10-2018 VF_0038 f096caaaa83aed745981ffde62796e54 597 SUPERFAMILY SSF55920 303 559 6.02E-53 T 10-10-2018 IPR036005 Creatinase/aminopeptidase-like VF_0038 f096caaaa83aed745981ffde62796e54 597 Pfam PF16188 C-terminal region of peptidase_M24 534 593 5.7E-23 T 10-10-2018 IPR032416 Peptidase M24, C-terminal domain VF_0038 f096caaaa83aed745981ffde62796e54 597 Gene3D G3DSA:3.40.350.10 147 293 1.3E-28 T 10-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal VF_0038 f096caaaa83aed745981ffde62796e54 597 Pfam PF16189 Creatinase/Prolidase N-terminal domain 148 306 1.1E-39 T 10-10-2018 VF_0038 f096caaaa83aed745981ffde62796e54 597 Gene3D G3DSA:3.40.350.10 1 146 4.3E-37 T 10-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal VF_0038 f096caaaa83aed745981ffde62796e54 597 SUPERFAMILY SSF53092 7 146 4.36E-19 T 10-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal VF_0038 f096caaaa83aed745981ffde62796e54 597 Pfam PF00557 Metallopeptidase family M24 309 524 2.3E-41 T 10-10-2018 IPR000994 Peptidase M24 VF_0038 f096caaaa83aed745981ffde62796e54 597 Pfam PF01321 Creatinase/Prolidase N-terminal domain 8 130 1.3E-18 T 10-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 VF_A0685 d7797d51521f9e4353e6258992c40f9e 316 Gene3D G3DSA:3.20.20.70 2 316 7.9E-141 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A0685 d7797d51521f9e4353e6258992c40f9e 316 Hamap MF_00492 Transaldolase [tal]. 2 316 51.086 T 10-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VF_A0685 d7797d51521f9e4353e6258992c40f9e 316 TIGRFAM TIGR00874 talAB: transaldolase 4 316 1.1E-155 T 10-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VF_A0685 d7797d51521f9e4353e6258992c40f9e 316 ProSitePatterns PS00958 Transaldolase active site. 129 146 - T 10-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VF_A0685 d7797d51521f9e4353e6258992c40f9e 316 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 10-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VF_A0685 d7797d51521f9e4353e6258992c40f9e 316 SUPERFAMILY SSF51569 1 315 3.66E-114 T 10-10-2018 VF_A0685 d7797d51521f9e4353e6258992c40f9e 316 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 312 8.0E-102 T 10-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 SUPERFAMILY SSF52540 205 446 5.11E-61 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 Pfam PF00158 Sigma-54 interaction domain 206 370 2.1E-57 T 10-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 SMART SM00382 225 369 5.5E-6 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 Gene3D G3DSA:3.30.70.260 1 80 1.4E-26 T 10-10-2018 VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 Pfam PF00989 PAS fold 82 139 6.3E-5 T 10-10-2018 IPR013767 PAS fold GO:0006355 VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 291 306 - T 10-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 SUPERFAMILY SSF55785 81 171 4.01E-7 T 10-10-2018 IPR035965 PAS domain superfamily VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 Gene3D G3DSA:1.10.10.60 459 514 1.4E-26 T 10-10-2018 VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 SUPERFAMILY SSF55021 1 68 1.17E-7 T 10-10-2018 VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 Gene3D G3DSA:1.10.8.60 377 458 6.7E-14 T 10-10-2018 VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 229 242 - T 10-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 SUPERFAMILY SSF46689 458 513 5.97E-9 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 466 514 2.0E-28 T 10-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 SMART SM00091 80 146 2.9E-4 T 10-10-2018 IPR000014 PAS domain VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 Gene3D G3DSA:3.40.50.300 196 376 1.9E-56 T 10-10-2018 VF_A0751 9c8a99d04d92256e16cf8af7e0d3fe21 515 Gene3D G3DSA:3.30.450.20 82 187 1.9E-20 T 10-10-2018 VF_A0626 952d829c6a056e772fa0c5da61492a1b 144 Gene3D G3DSA:3.40.630.30 3 143 1.8E-31 T 10-10-2018 VF_A0626 952d829c6a056e772fa0c5da61492a1b 144 SUPERFAMILY SSF55729 4 143 3.71E-26 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A0626 952d829c6a056e772fa0c5da61492a1b 144 Pfam PF13673 Acetyltransferase (GNAT) domain 39 142 2.2E-15 T 10-10-2018 IPR000182 GNAT domain VF_1983 a5960962e8a119ceff7429370552effe 272 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 26 272 4.2E-121 T 10-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 VF_1983 a5960962e8a119ceff7429370552effe 272 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1983 a5960962e8a119ceff7429370552effe 272 SMART SM00382 50 247 2.3E-14 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1983 a5960962e8a119ceff7429370552effe 272 Gene3D G3DSA:3.40.50.300 21 268 3.6E-68 T 10-10-2018 VF_1983 a5960962e8a119ceff7429370552effe 272 Pfam PF00005 ABC transporter 41 197 5.6E-33 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1983 a5960962e8a119ceff7429370552effe 272 SUPERFAMILY SSF52540 21 258 6.23E-63 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0191 0b12f532c6216f51609d2a9a84973242 700 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 154 4.8E-16 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain VF_A0191 0b12f532c6216f51609d2a9a84973242 700 SUPERFAMILY SSF56935 22 700 1.34E-117 T 10-10-2018 VF_A0191 0b12f532c6216f51609d2a9a84973242 700 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 59 699 6.9E-87 T 10-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 VF_A0191 0b12f532c6216f51609d2a9a84973242 700 Gene3D G3DSA:2.40.170.20 165 700 2.7E-102 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VF_A0191 0b12f532c6216f51609d2a9a84973242 700 Pfam PF00593 TonB dependent receptor 235 699 4.5E-50 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VF_A0191 0b12f532c6216f51609d2a9a84973242 700 Gene3D G3DSA:2.170.130.10 39 164 2.5E-29 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VF_A0394 aeb05ea73f289eb1f27bc804aa70f229 350 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 5 348 2.8E-170 T 10-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VF_A0394 aeb05ea73f289eb1f27bc804aa70f229 350 Gene3D G3DSA:3.20.20.70 1 349 7.3E-168 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A0394 aeb05ea73f289eb1f27bc804aa70f229 350 Pfam PF00793 DAHP synthetase I family 40 337 5.2E-103 T 10-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VF_A0394 aeb05ea73f289eb1f27bc804aa70f229 350 PIRSF PIRSF001361 1 350 1.7E-163 T 10-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VF_A0394 aeb05ea73f289eb1f27bc804aa70f229 350 SUPERFAMILY SSF51569 6 347 8.69E-139 T 10-10-2018 VF_A0040 354583fe0f6a4685614b137b2e9260e3 485 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 399 482 1.6E-5 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0040 354583fe0f6a4685614b137b2e9260e3 485 Pfam PF05231 MASE1 3 263 1.1E-17 T 10-10-2018 IPR007895 MASE1 VF_A0040 354583fe0f6a4685614b137b2e9260e3 485 SUPERFAMILY SSF55874 364 483 1.7E-15 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0040 354583fe0f6a4685614b137b2e9260e3 485 Gene3D G3DSA:3.30.565.10 356 484 2.3E-26 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0040 354583fe0f6a4685614b137b2e9260e3 485 SMART SM00387 394 485 3.1E-5 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0040 354583fe0f6a4685614b137b2e9260e3 485 Pfam PF07730 Histidine kinase 291 354 5.9E-12 T 10-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 VF_0632 80b8888d4e182f4943defd0bba690870 385 SMART SM00564 107 138 5.0E-4 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VF_0632 80b8888d4e182f4943defd0bba690870 385 SMART SM00564 243 274 5.5 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VF_0632 80b8888d4e182f4943defd0bba690870 385 SMART SM00564 322 353 110.0 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VF_0632 80b8888d4e182f4943defd0bba690870 385 SMART SM00564 63 94 9.2E-5 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VF_0632 80b8888d4e182f4943defd0bba690870 385 SMART SM00564 146 178 5.5 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VF_0632 80b8888d4e182f4943defd0bba690870 385 SMART SM00564 191 223 700.0 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VF_0632 80b8888d4e182f4943defd0bba690870 385 SMART SM00564 281 312 51.0 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VF_0632 80b8888d4e182f4943defd0bba690870 385 SUPERFAMILY SSF50998 30 376 1.73E-88 T 10-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily VF_0632 80b8888d4e182f4943defd0bba690870 385 Gene3D G3DSA:2.130.10.10 18 385 1.2E-104 T 10-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VF_0632 80b8888d4e182f4943defd0bba690870 385 Pfam PF13360 PQQ-like domain 76 310 1.2E-55 T 10-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat VF_0632 80b8888d4e182f4943defd0bba690870 385 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 3 384 41.615 T 10-10-2018 IPR017687 Outer membrane protein assembly factor BamB VF_0632 80b8888d4e182f4943defd0bba690870 385 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 7 382 1.2E-143 T 10-10-2018 IPR017687 Outer membrane protein assembly factor BamB VF_0823 4150d8e89f3442abf5707937d77aa947 938 PIRSF PIRSF000157 1 935 0.0 T 10-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 VF_0823 4150d8e89f3442abf5707937d77aa947 938 SUPERFAMILY SSF52518 577 794 1.08E-52 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_0823 4150d8e89f3442abf5707937d77aa947 938 SMART SM00861 594 787 1.2E-61 T 10-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VF_0823 4150d8e89f3442abf5707937d77aa947 938 SUPERFAMILY SSF52518 165 535 5.08E-85 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_0823 4150d8e89f3442abf5707937d77aa947 938 Pfam PF02779 Transketolase, pyrimidine binding domain 593 788 4.7E-67 T 10-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VF_0823 4150d8e89f3442abf5707937d77aa947 938 Gene3D G3DSA:3.40.50.970 168 534 1.4E-147 T 10-10-2018 VF_0823 4150d8e89f3442abf5707937d77aa947 938 Gene3D G3DSA:3.40.50.11610 724 930 2.0E-171 T 10-10-2018 VF_0823 4150d8e89f3442abf5707937d77aa947 938 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 15 933 0.0 T 10-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 VF_0823 4150d8e89f3442abf5707937d77aa947 938 Gene3D G3DSA:1.10.287.1150 85 167 9.5E-29 T 10-10-2018 VF_0823 4150d8e89f3442abf5707937d77aa947 938 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 791 933 5.0E-52 T 10-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 VF_0823 4150d8e89f3442abf5707937d77aa947 938 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 49 7.6E-14 T 10-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 VF_0823 4150d8e89f3442abf5707937d77aa947 938 Pfam PF00676 Dehydrogenase E1 component 226 517 4.5E-49 T 10-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 VF_0823 4150d8e89f3442abf5707937d77aa947 938 Gene3D G3DSA:3.40.50.12470 557 803 2.0E-171 T 10-10-2018 VF_1926 6dd1a70c7bf23b1f560a9a0801865a54 406 Pfam PF00860 Permease family 1 363 3.5E-92 T 10-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 VF_1926 6dd1a70c7bf23b1f560a9a0801865a54 406 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 2 386 6.4E-111 T 10-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 VF_1926 6dd1a70c7bf23b1f560a9a0801865a54 406 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 310 330 - T 10-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 VF_1990 5e0644fe4fde963b3aa1ceb6e990dcd0 462 Pfam PF16325 Peptidase family U32 C-terminal domain 367 448 1.2E-18 T 10-10-2018 IPR032525 Peptidase family U32, C-terminal VF_1990 5e0644fe4fde963b3aa1ceb6e990dcd0 462 Gene3D G3DSA:2.40.30.10 363 449 9.4E-7 T 10-10-2018 VF_1990 5e0644fe4fde963b3aa1ceb6e990dcd0 462 ProSitePatterns PS01276 Peptidase family U32 signature. 162 180 - T 10-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VF_1990 5e0644fe4fde963b3aa1ceb6e990dcd0 462 Pfam PF01136 Peptidase family U32 75 351 3.2E-96 T 10-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VF_1100 7d20b6930e7d20c84434b5912e52689f 262 PIRSF PIRSF006278 1 260 7.1E-11 T 10-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase VF_1100 7d20b6930e7d20c84434b5912e52689f 262 Gene3D G3DSA:3.40.50.1100 56 254 1.7E-15 T 10-10-2018 VF_1100 7d20b6930e7d20c84434b5912e52689f 262 SUPERFAMILY SSF53686 4 259 6.99E-43 T 10-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VF_A0608 5a21b711a46a9cfe1601876755ed094e 334 SUPERFAMILY SSF52172 3 118 1.39E-25 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0608 5a21b711a46a9cfe1601876755ed094e 334 Gene3D G3DSA:3.40.1550.10 137 328 7.5E-31 T 10-10-2018 IPR028976 CheC-like superfamily VF_A0608 5a21b711a46a9cfe1601876755ed094e 334 SMART SM00448 3 115 5.4E-20 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0608 5a21b711a46a9cfe1601876755ed094e 334 SUPERFAMILY SSF103039 139 329 2.49E-37 T 10-10-2018 IPR028976 CheC-like superfamily VF_A0608 5a21b711a46a9cfe1601876755ed094e 334 Gene3D G3DSA:3.40.50.2300 1 128 7.4E-26 T 10-10-2018 VF_A0608 5a21b711a46a9cfe1601876755ed094e 334 Pfam PF00072 Response regulator receiver domain 5 115 2.1E-22 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1020 cf3d44bce8bd47079ad946d859f2d47c 228 TIGRFAM TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621 1 215 5.3E-102 T 10-10-2018 IPR006508 Pseudouridine synthase, RluA-like VF_1020 cf3d44bce8bd47079ad946d859f2d47c 228 SUPERFAMILY SSF55120 2 184 4.96E-48 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1020 cf3d44bce8bd47079ad946d859f2d47c 228 Gene3D G3DSA:3.30.2350.10 1 194 3.7E-50 T 10-10-2018 VF_1020 cf3d44bce8bd47079ad946d859f2d47c 228 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 47 61 - T 10-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1020 cf3d44bce8bd47079ad946d859f2d47c 228 Pfam PF00849 RNA pseudouridylate synthase 10 153 3.2E-27 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0054 cda8ade1299a382b17b1f83097096a4a 497 SUPERFAMILY SSF109604 311 494 6.59E-37 T 10-10-2018 VF_0054 cda8ade1299a382b17b1f83097096a4a 497 Gene3D G3DSA:3.30.420.150 114 291 8.3E-84 T 10-10-2018 VF_0054 cda8ade1299a382b17b1f83097096a4a 497 Hamap MF_01550 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [gppA]. 4 494 52.094 T 10-10-2018 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GO:0008894|GO:0015974 KEGG: 00230+3.6.1.40 VF_0054 cda8ade1299a382b17b1f83097096a4a 497 Gene3D G3DSA:3.30.420.40 11 298 8.3E-84 T 10-10-2018 VF_0054 cda8ade1299a382b17b1f83097096a4a 497 Pfam PF02541 Ppx/GppA phosphatase family 23 303 5.9E-88 T 10-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 VF_0054 cda8ade1299a382b17b1f83097096a4a 497 PIRSF PIRSF001267 1 496 6.4E-184 T 10-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 VF_0054 cda8ade1299a382b17b1f83097096a4a 497 Gene3D G3DSA:1.10.3210.10 306 497 1.5E-43 T 10-10-2018 VF_0054 cda8ade1299a382b17b1f83097096a4a 497 SUPERFAMILY SSF53067 9 129 1.49E-37 T 10-10-2018 VF_0054 cda8ade1299a382b17b1f83097096a4a 497 SUPERFAMILY SSF53067 134 306 1.05E-42 T 10-10-2018 VF_1134 621698298cfc765738ec0415bc4ef141 116 Pfam PF01230 HIT domain 12 109 7.2E-30 T 10-10-2018 IPR001310 Histidine triad (HIT) protein VF_1134 621698298cfc765738ec0415bc4ef141 116 SUPERFAMILY SSF54197 2 113 1.11E-35 T 10-10-2018 IPR036265 HIT-like superfamily VF_1134 621698298cfc765738ec0415bc4ef141 116 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 10-10-2018 IPR019808 Histidine triad, conserved site VF_1134 621698298cfc765738ec0415bc4ef141 116 PRINTS PR00332 Histidine triad family signature 6 22 1.3E-19 T 10-10-2018 IPR001310 Histidine triad (HIT) protein VF_1134 621698298cfc765738ec0415bc4ef141 116 PRINTS PR00332 Histidine triad family signature 27 45 1.3E-19 T 10-10-2018 IPR001310 Histidine triad (HIT) protein VF_1134 621698298cfc765738ec0415bc4ef141 116 PRINTS PR00332 Histidine triad family signature 95 105 1.3E-19 T 10-10-2018 IPR001310 Histidine triad (HIT) protein VF_1134 621698298cfc765738ec0415bc4ef141 116 Gene3D G3DSA:3.30.428.10 1 111 1.6E-35 T 10-10-2018 IPR036265 HIT-like superfamily VF_A0805 a17d9dcf10060f2b950f67218ffb2e0d 499 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 19 495 2.0E-161 T 10-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 VF_A0805 a17d9dcf10060f2b950f67218ffb2e0d 499 Hamap MF_00484 Glycogen synthase [glgA]. 18 496 38.92 T 10-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 VF_A0805 a17d9dcf10060f2b950f67218ffb2e0d 499 Pfam PF00534 Glycosyl transferases group 1 312 450 3.1E-13 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 VF_A0805 a17d9dcf10060f2b950f67218ffb2e0d 499 Gene3D G3DSA:3.40.50.2000 269 480 4.3E-159 T 10-10-2018 VF_A0805 a17d9dcf10060f2b950f67218ffb2e0d 499 Pfam PF08323 Starch synthase catalytic domain 20 253 2.3E-68 T 10-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 VF_A0805 a17d9dcf10060f2b950f67218ffb2e0d 499 Gene3D G3DSA:3.40.50.2000 20 494 4.3E-159 T 10-10-2018 VF_A0805 a17d9dcf10060f2b950f67218ffb2e0d 499 SUPERFAMILY SSF53756 17 498 1.92E-108 T 10-10-2018 VF_A0128 15df414aaee3f91238c2febcba2b5369 89 Gene3D G3DSA:3.40.50.2300 1 89 5.0E-23 T 10-10-2018 VF_A0128 15df414aaee3f91238c2febcba2b5369 89 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 86 1.1E-18 T 10-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VF_A0128 15df414aaee3f91238c2febcba2b5369 89 SUPERFAMILY SSF52794 1 87 1.31E-20 T 10-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VF_1959 db0cf11285ebbccc8e95f6b4c30bf941 185 Gene3D G3DSA:1.10.132.20 101 185 1.1E-27 T 10-10-2018 VF_1959 db0cf11285ebbccc8e95f6b4c30bf941 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 1.0E-74 T 10-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 VF_1959 db0cf11285ebbccc8e95f6b4c30bf941 185 Gene3D G3DSA:3.30.1360.40 35 100 4.1E-30 T 10-10-2018 VF_1959 db0cf11285ebbccc8e95f6b4c30bf941 185 Pfam PF01765 Ribosome recycling factor 20 183 2.9E-61 T 10-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 VF_1959 db0cf11285ebbccc8e95f6b4c30bf941 185 Gene3D G3DSA:1.10.132.20 1 34 5.8E-9 T 10-10-2018 VF_1959 db0cf11285ebbccc8e95f6b4c30bf941 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.567 T 10-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 VF_1959 db0cf11285ebbccc8e95f6b4c30bf941 185 SUPERFAMILY SSF55194 2 185 1.96E-71 T 10-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 VF_1083 2b315d42f99d3509e3227353e8a886cd 286 Pfam PF00043 Glutathione S-transferase, C-terminal domain 181 248 6.1E-8 T 10-10-2018 IPR004046 Glutathione S-transferase, C-terminal VF_1083 2b315d42f99d3509e3227353e8a886cd 286 SUPERFAMILY SSF52833 36 129 6.83E-17 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1083 2b315d42f99d3509e3227353e8a886cd 286 Pfam PF02798 Glutathione S-transferase, N-terminal domain 45 126 1.4E-6 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VF_1083 2b315d42f99d3509e3227353e8a886cd 286 Gene3D G3DSA:1.20.1050.10 132 248 6.9E-112 T 10-10-2018 VF_1083 2b315d42f99d3509e3227353e8a886cd 286 Gene3D G3DSA:3.40.30.10 18 254 6.9E-112 T 10-10-2018 VF_1083 2b315d42f99d3509e3227353e8a886cd 286 SUPERFAMILY SSF47616 116 258 1.35E-32 T 10-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VF_A0537 38e68aeb341e82b6a24e20041125c406 488 Pfam PF12161 HsdM N-terminal domain 7 133 2.3E-23 T 10-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain VF_A0537 38e68aeb341e82b6a24e20041125c406 488 Gene3D G3DSA:1.20.1260.30 1 137 3.6E-23 T 10-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily VF_A0537 38e68aeb341e82b6a24e20041125c406 488 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 169 185 1.1E-9 T 10-10-2018 VF_A0537 38e68aeb341e82b6a24e20041125c406 488 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 193 207 1.1E-9 T 10-10-2018 VF_A0537 38e68aeb341e82b6a24e20041125c406 488 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 270 282 1.1E-9 T 10-10-2018 VF_A0537 38e68aeb341e82b6a24e20041125c406 488 Pfam PF02384 N-6 DNA Methylase 146 451 5.8E-80 T 10-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 VF_A0537 38e68aeb341e82b6a24e20041125c406 488 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 273 279 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VF_A0537 38e68aeb341e82b6a24e20041125c406 488 Gene3D G3DSA:3.40.50.150 146 440 6.1E-81 T 10-10-2018 VF_A0537 38e68aeb341e82b6a24e20041125c406 488 SUPERFAMILY SSF53335 5 486 1.75E-115 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_1636 71dfc67bd68bb13870ee07c56423d6e5 204 Pfam PF02810 SEC-C motif 186 204 3.3E-9 T 10-10-2018 IPR004027 SEC-C motif VF_1636 71dfc67bd68bb13870ee07c56423d6e5 204 Gene3D G3DSA:3.10.450.50 161 204 2.2E-8 T 10-10-2018 VF_1636 71dfc67bd68bb13870ee07c56423d6e5 204 SUPERFAMILY SSF103642 184 203 6.21E-7 T 10-10-2018 VF_1636 71dfc67bd68bb13870ee07c56423d6e5 204 Pfam PF03695 Uncharacterised protein family (UPF0149) 8 162 5.4E-6 T 10-10-2018 IPR011978 Uncharacterised protein family UPF0149 VF_2276 0aa9f681e2bd92d57bd6f4b50c5fd2ee 199 Pfam PF05036 Sporulation related domain 126 195 5.7E-15 T 10-10-2018 IPR007730 Sporulation-like domain GO:0042834 VF_2276 0aa9f681e2bd92d57bd6f4b50c5fd2ee 199 SUPERFAMILY SSF110997 126 196 3.27E-17 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VF_2276 0aa9f681e2bd92d57bd6f4b50c5fd2ee 199 Gene3D G3DSA:3.30.70.1070 120 198 5.4E-27 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VF_1921 75f6e0b1bb0881b872d836e2cd9fe8f9 354 Pfam PF01594 AI-2E family transporter 20 345 1.8E-76 T 10-10-2018 IPR002549 Transmembrane protein TqsA-like VF_2520 e7ee1929b2be465b313d46d107be4f64 135 Gene3D G3DSA:1.10.760.10 57 134 3.1E-33 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_2520 e7ee1929b2be465b313d46d107be4f64 135 PRINTS PR00607 Class IE cytochrome C signature 67 78 2.3E-12 T 10-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 VF_2520 e7ee1929b2be465b313d46d107be4f64 135 PRINTS PR00607 Class IE cytochrome C signature 78 88 2.3E-12 T 10-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 VF_2520 e7ee1929b2be465b313d46d107be4f64 135 PRINTS PR00607 Class IE cytochrome C signature 121 132 2.3E-12 T 10-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 VF_2520 e7ee1929b2be465b313d46d107be4f64 135 PRINTS PR00607 Class IE cytochrome C signature 106 118 2.3E-12 T 10-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 VF_2520 e7ee1929b2be465b313d46d107be4f64 135 SUPERFAMILY SSF46626 58 132 5.03E-19 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_2520 e7ee1929b2be465b313d46d107be4f64 135 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 57 131 1.4E-17 T 10-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_A0197 e9e6aec70d23bbf940827ee4d48cba0b 393 SMART SM00028 63 96 130.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0197 e9e6aec70d23bbf940827ee4d48cba0b 393 SMART SM00028 343 376 400.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0197 e9e6aec70d23bbf940827ee4d48cba0b 393 SMART SM00028 101 134 69.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0197 e9e6aec70d23bbf940827ee4d48cba0b 393 SMART SM00028 279 312 220.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0197 e9e6aec70d23bbf940827ee4d48cba0b 393 SMART SM00028 138 171 39.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0197 e9e6aec70d23bbf940827ee4d48cba0b 393 Gene3D G3DSA:1.25.40.10 17 174 1.1E-12 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0197 e9e6aec70d23bbf940827ee4d48cba0b 393 SUPERFAMILY SSF48452 32 238 1.3E-14 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0197 e9e6aec70d23bbf940827ee4d48cba0b 393 SUPERFAMILY SSF48452 187 376 4.3E-9 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0197 e9e6aec70d23bbf940827ee4d48cba0b 393 Gene3D G3DSA:1.25.40.10 284 391 1.4E-5 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0197 e9e6aec70d23bbf940827ee4d48cba0b 393 Gene3D G3DSA:1.25.40.10 178 283 4.4E-6 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0058 6bde405a33766c42348ea285cc03a653 193 Pfam PF13689 Domain of unknown function (DUF4154) 46 184 1.5E-24 T 10-10-2018 IPR025293 YfiR-like VF_0809 d5582dd2842f2932195a147e24560b8c 552 Gene3D G3DSA:3.40.50.620 30 247 1.2E-105 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0809 d5582dd2842f2932195a147e24560b8c 552 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 28 551 1.3E-293 T 10-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VF_0809 d5582dd2842f2932195a147e24560b8c 552 SUPERFAMILY SSF50715 340 548 6.8E-79 T 10-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VF_0809 d5582dd2842f2932195a147e24560b8c 552 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 28 337 2.8E-126 T 10-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 VF_0809 d5582dd2842f2932195a147e24560b8c 552 SUPERFAMILY SSF52374 10 337 1.04E-100 T 10-10-2018 VF_0809 d5582dd2842f2932195a147e24560b8c 552 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 550 54.231 T 10-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 VF_0809 d5582dd2842f2932195a147e24560b8c 552 Gene3D G3DSA:2.40.240.10 348 463 4.8E-46 T 10-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VF_0809 d5582dd2842f2932195a147e24560b8c 552 Gene3D G3DSA:2.40.240.10 464 548 1.3E-33 T 10-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VF_0809 d5582dd2842f2932195a147e24560b8c 552 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 340 529 7.4E-64 T 10-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VF_0809 d5582dd2842f2932195a147e24560b8c 552 Gene3D G3DSA:3.90.800.10 101 209 1.2E-105 T 10-10-2018 VF_0809 d5582dd2842f2932195a147e24560b8c 552 Gene3D G3DSA:1.10.1160.10 261 339 5.6E-36 T 10-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 VF_0809 d5582dd2842f2932195a147e24560b8c 552 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 34 45 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0809 d5582dd2842f2932195a147e24560b8c 552 PRINTS PR00987 Glutamyl-tRNA synthetase signature 45 56 5.9E-10 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VF_0809 d5582dd2842f2932195a147e24560b8c 552 PRINTS PR00987 Glutamyl-tRNA synthetase signature 60 73 5.9E-10 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VF_0809 d5582dd2842f2932195a147e24560b8c 552 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 220 5.9E-10 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VF_0809 d5582dd2842f2932195a147e24560b8c 552 PRINTS PR00987 Glutamyl-tRNA synthetase signature 31 43 5.9E-10 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VF_0321 59092b00f065412075d4b6f96996e17d 478 PRINTS PR00315 GTP-binding elongation factor signature 28 41 7.2E-12 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0321 59092b00f065412075d4b6f96996e17d 478 PRINTS PR00315 GTP-binding elongation factor signature 89 97 7.2E-12 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0321 59092b00f065412075d4b6f96996e17d 478 PRINTS PR00315 GTP-binding elongation factor signature 162 171 7.2E-12 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0321 59092b00f065412075d4b6f96996e17d 478 PRINTS PR00315 GTP-binding elongation factor signature 125 136 7.2E-12 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0321 59092b00f065412075d4b6f96996e17d 478 PRINTS PR00315 GTP-binding elongation factor signature 109 119 7.2E-12 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0321 59092b00f065412075d4b6f96996e17d 478 SUPERFAMILY SSF52540 19 237 1.2E-59 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0321 59092b00f065412075d4b6f96996e17d 478 Gene3D G3DSA:3.40.50.300 5 240 4.9E-71 T 10-10-2018 VF_0321 59092b00f065412075d4b6f96996e17d 478 Pfam PF00009 Elongation factor Tu GTP binding domain 26 227 3.5E-44 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0321 59092b00f065412075d4b6f96996e17d 478 Gene3D G3DSA:2.40.30.10 332 435 1.1E-29 T 10-10-2018 VF_0321 59092b00f065412075d4b6f96996e17d 478 SUPERFAMILY SSF50465 333 435 2.16E-29 T 10-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal VF_0321 59092b00f065412075d4b6f96996e17d 478 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 27 434 4.1E-199 T 10-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VF_0321 59092b00f065412075d4b6f96996e17d 478 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 82 97 - T 10-10-2018 IPR031157 Tr-type G domain, conserved site VF_0321 59092b00f065412075d4b6f96996e17d 478 SUPERFAMILY SSF50447 243 328 2.08E-24 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VF_0321 59092b00f065412075d4b6f96996e17d 478 Gene3D G3DSA:2.40.30.10 243 329 1.2E-27 T 10-10-2018 VF_0321 59092b00f065412075d4b6f96996e17d 478 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 18 477 52.657 T 10-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VF_1479 2aa04a94746591071a081223dd59b687 228 ProSitePatterns PS00221 MIP family signature. 60 68 - T 10-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 VF_1479 2aa04a94746591071a081223dd59b687 228 SUPERFAMILY SSF81338 2 224 4.32E-67 T 10-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VF_1479 2aa04a94746591071a081223dd59b687 228 Hamap MF_01146 Aquaporin Z [aqpZ]. 1 228 35.399 T 10-10-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 VF_1479 2aa04a94746591071a081223dd59b687 228 Gene3D G3DSA:1.20.1080.10 1 228 3.9E-85 T 10-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VF_1479 2aa04a94746591071a081223dd59b687 228 PRINTS PR00783 Major intrinsic protein family signature 2 21 7.2E-53 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_1479 2aa04a94746591071a081223dd59b687 228 PRINTS PR00783 Major intrinsic protein family signature 79 98 7.2E-53 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_1479 2aa04a94746591071a081223dd59b687 228 PRINTS PR00783 Major intrinsic protein family signature 204 224 7.2E-53 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_1479 2aa04a94746591071a081223dd59b687 228 PRINTS PR00783 Major intrinsic protein family signature 42 66 7.2E-53 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_1479 2aa04a94746591071a081223dd59b687 228 PRINTS PR00783 Major intrinsic protein family signature 135 153 7.2E-53 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_1479 2aa04a94746591071a081223dd59b687 228 PRINTS PR00783 Major intrinsic protein family signature 165 187 7.2E-53 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_1479 2aa04a94746591071a081223dd59b687 228 Pfam PF00230 Major intrinsic protein 2 221 1.4E-48 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_1479 2aa04a94746591071a081223dd59b687 228 TIGRFAM TIGR00861 MIP: MIP family channel proteins 6 221 8.4E-59 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_0476 15feb8611147e2ad635a4b2d08155345 157 Gene3D G3DSA:1.10.287.180 1 74 2.7E-24 T 10-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 VF_0476 15feb8611147e2ad635a4b2d08155345 157 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 47 - T 10-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 VF_0476 15feb8611147e2ad635a4b2d08155345 157 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 120 136 - T 10-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 VF_0476 15feb8611147e2ad635a4b2d08155345 157 Pfam PF03449 Transcription elongation factor, N-terminal 4 73 3.0E-23 T 10-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 VF_0476 15feb8611147e2ad635a4b2d08155345 157 SUPERFAMILY SSF54534 80 156 4.71E-23 T 10-10-2018 VF_0476 15feb8611147e2ad635a4b2d08155345 157 SUPERFAMILY SSF46557 3 75 2.75E-24 T 10-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 VF_0476 15feb8611147e2ad635a4b2d08155345 157 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 156 7.0E-27 T 10-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 VF_0476 15feb8611147e2ad635a4b2d08155345 157 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 155 31.2 T 10-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 VF_0476 15feb8611147e2ad635a4b2d08155345 157 PIRSF PIRSF006092 1 157 1.5E-44 T 10-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 VF_0476 15feb8611147e2ad635a4b2d08155345 157 Gene3D G3DSA:3.10.50.30 75 157 2.1E-29 T 10-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 VF_0476 15feb8611147e2ad635a4b2d08155345 157 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 154 1.5E-51 T 10-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 VF_0029 cf64d3349f034e6068d0dbf6867b81da 917 SUPERFAMILY SSF63411 498 714 3.49E-23 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VF_0029 cf64d3349f034e6068d0dbf6867b81da 917 Gene3D G3DSA:3.30.830.10 507 716 4.0E-15 T 10-10-2018 VF_0029 cf64d3349f034e6068d0dbf6867b81da 917 Pfam PF00675 Insulinase (Peptidase family M16) 48 164 1.1E-24 T 10-10-2018 IPR011765 Peptidase M16, N-terminal VF_0029 cf64d3349f034e6068d0dbf6867b81da 917 Gene3D G3DSA:3.30.830.10 28 252 2.6E-56 T 10-10-2018 VF_0029 cf64d3349f034e6068d0dbf6867b81da 917 Pfam PF05193 Peptidase M16 inactive domain 201 371 3.1E-10 T 10-10-2018 IPR007863 Peptidase M16, C-terminal VF_0029 cf64d3349f034e6068d0dbf6867b81da 917 Pfam PF05193 Peptidase M16 inactive domain 670 849 1.4E-12 T 10-10-2018 IPR007863 Peptidase M16, C-terminal VF_0029 cf64d3349f034e6068d0dbf6867b81da 917 Gene3D G3DSA:3.30.830.10 721 910 4.8E-15 T 10-10-2018 VF_0029 cf64d3349f034e6068d0dbf6867b81da 917 Gene3D G3DSA:3.30.830.10 255 471 3.2E-5 T 10-10-2018 VF_0029 cf64d3349f034e6068d0dbf6867b81da 917 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 61 84 - T 10-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 VF_0029 cf64d3349f034e6068d0dbf6867b81da 917 SUPERFAMILY SSF63411 750 908 1.52E-16 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VF_0029 cf64d3349f034e6068d0dbf6867b81da 917 SUPERFAMILY SSF63411 29 243 1.75E-38 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VF_0141 2509012ba4dedb3371c0e55d9ae47c42 381 TIGRFAM TIGR04181 NHT_00031: aminotransferase, LLPSF_NHT_00031 family 20 376 2.0E-164 T 10-10-2018 IPR026385 Aminotransferase, LLPSF_NHT_00031 family VF_0141 2509012ba4dedb3371c0e55d9ae47c42 381 SUPERFAMILY SSF53383 17 378 2.75E-93 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_0141 2509012ba4dedb3371c0e55d9ae47c42 381 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 29 378 6.8E-83 T 10-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VF_0141 2509012ba4dedb3371c0e55d9ae47c42 381 Gene3D G3DSA:3.40.640.10 4 275 2.4E-85 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_0141 2509012ba4dedb3371c0e55d9ae47c42 381 PIRSF PIRSF000390 15 380 7.9E-89 T 10-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VF_0141 2509012ba4dedb3371c0e55d9ae47c42 381 Gene3D G3DSA:3.90.1150.10 277 379 2.1E-17 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 Gene3D G3DSA:2.70.150.20 291 407 1.1E-33 T 10-10-2018 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 Gene3D G3DSA:3.40.1110.10 512 618 1.0E-66 T 10-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 228 787 2.3E-155 T 10-10-2018 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 278 765 4.7E-75 T 10-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 245 787 5.2E-162 T 10-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 SUPERFAMILY SSF55008 84 162 2.09E-17 T 10-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 Gene3D G3DSA:3.30.70.100 89 174 7.6E-14 T 10-10-2018 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 Pfam PF00702 haloacid dehalogenase-like hydrolase 498 698 2.0E-29 T 10-10-2018 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 SUPERFAMILY SSF81665 276 768 2.88E-9 T 10-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 501 515 1.1E-27 T 10-10-2018 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 708 720 1.1E-27 T 10-10-2018 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 611 622 1.1E-27 T 10-10-2018 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 353 367 1.1E-27 T 10-10-2018 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 633 643 1.1E-27 T 10-10-2018 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 685 704 1.1E-27 T 10-10-2018 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 Pfam PF00122 E1-E2 ATPase 318 480 4.8E-47 T 10-10-2018 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 SUPERFAMILY SSF81653 318 401 6.54E-23 T 10-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 503 509 - T 10-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 Pfam PF12156 Putative metal-binding domain of cation transport ATPase 4 86 2.2E-28 T 10-10-2018 IPR021993 Putative metal-binding domain of cation transport ATPase VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 272 789 5.0E-122 T 10-10-2018 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 Pfam PF00403 Heavy-metal-associated domain 93 154 6.1E-11 T 10-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 Gene3D G3DSA:3.40.50.1000 482 737 1.0E-66 T 10-10-2018 IPR023214 HAD superfamily VF_1304 d1dcbe4cfc5268d47cd3091c9e5d4ef1 792 SUPERFAMILY SSF56784 500 785 1.39E-46 T 10-10-2018 IPR036412 HAD-like superfamily VF_A0598 ce6aa50c9e03c2f2f1fbc58c96afd2c8 409 SUPERFAMILY SSF69593 83 328 1.57E-7 T 10-10-2018 VF_A0598 ce6aa50c9e03c2f2f1fbc58c96afd2c8 409 Pfam PF01553 Acyltransferase 125 236 3.0E-8 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VF_A1007 fb147ab4380c30c7effcec06e71664c5 518 Gene3D G3DSA:3.40.720.10 46 418 4.7E-101 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VF_A1007 fb147ab4380c30c7effcec06e71664c5 518 Pfam PF00884 Sulfatase 46 397 1.6E-55 T 10-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VF_A1007 fb147ab4380c30c7effcec06e71664c5 518 Gene3D G3DSA:3.30.1120.10 425 512 1.3E-23 T 10-10-2018 VF_A1007 fb147ab4380c30c7effcec06e71664c5 518 SUPERFAMILY SSF53649 44 506 7.46E-98 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_A1007 fb147ab4380c30c7effcec06e71664c5 518 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 23 8.5E-4 T 10-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VF_A1007 fb147ab4380c30c7effcec06e71664c5 518 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 2 24 3.1E-5 T 10-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VF_A0333 19d03b2d0bbbeb559d28d70fa2cade51 667 Gene3D G3DSA:2.130.10.120 72 399 2.8E-148 T 10-10-2018 VF_A0333 19d03b2d0bbbeb559d28d70fa2cade51 667 Gene3D G3DSA:3.40.50.1820 21 662 2.8E-148 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_A0333 19d03b2d0bbbeb559d28d70fa2cade51 667 SUPERFAMILY SSF53474 411 650 4.09E-37 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_A0333 19d03b2d0bbbeb559d28d70fa2cade51 667 Pfam PF00326 Prolyl oligopeptidase family 453 666 3.3E-51 T 10-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 VF_A0333 19d03b2d0bbbeb559d28d70fa2cade51 667 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 20 392 4.0E-26 T 10-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 VF_A0333 19d03b2d0bbbeb559d28d70fa2cade51 667 SUPERFAMILY SSF50993 20 396 1.91E-32 T 10-10-2018 VF_A0333 19d03b2d0bbbeb559d28d70fa2cade51 667 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 597 619 2.0E-36 T 10-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VF_A0333 19d03b2d0bbbeb559d28d70fa2cade51 667 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 438 456 2.0E-36 T 10-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VF_A0333 19d03b2d0bbbeb559d28d70fa2cade51 667 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 579 594 2.0E-36 T 10-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VF_A0333 19d03b2d0bbbeb559d28d70fa2cade51 667 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 492 511 2.0E-36 T 10-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VF_A0333 19d03b2d0bbbeb559d28d70fa2cade51 667 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 464 488 2.0E-36 T 10-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VF_A0333 19d03b2d0bbbeb559d28d70fa2cade51 667 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 521 541 2.0E-36 T 10-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 11 143 1.3E-48 T 10-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 Gene3D G3DSA:2.170.190.11 235 328 3.2E-133 T 10-10-2018 VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 SMART SM00852 367 504 7.2E-42 T 10-10-2018 IPR001453 MoaB/Mog domain VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 Gene3D G3DSA:2.40.340.10 514 584 3.2E-133 T 10-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 Gene3D G3DSA:2.20.25.120 54 86 2.3E-55 T 10-10-2018 VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 SUPERFAMILY SSF53218 365 510 6.94E-44 T 10-10-2018 IPR036425 MoaB/Mog-like domain superfamily VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 SUPERFAMILY SSF52540 8 169 4.28E-26 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 PIRSF PIRSF036618 2 593 2.3E-280 T 10-10-2018 IPR012182 Bifunctional molybdenum cofactor biosynthesis MobB/MoeA VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 Pfam PF00994 Probable molybdopterin binding domain 367 504 1.5E-26 T 10-10-2018 IPR001453 MoaB/Mog domain VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 SUPERFAMILY SSF63867 513 591 1.26E-21 T 10-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 Gene3D G3DSA:3.40.980.10 362 513 3.2E-133 T 10-10-2018 IPR036425 MoaB/Mog-like domain superfamily VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 11 166 1.8E-44 T 10-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 440 473 - T 10-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 Pfam PF03454 MoeA C-terminal region (domain IV) 518 589 9.6E-19 T 10-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 Pfam PF03453 MoeA N-terminal region (domain I and II) 193 354 9.8E-36 T 10-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 Gene3D G3DSA:3.90.105.10 211 361 3.2E-133 T 10-10-2018 VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 Gene3D G3DSA:3.40.50.300 11 165 2.3E-55 T 10-10-2018 VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 364 500 1.3E-32 T 10-10-2018 IPR001453 MoaB/Mog domain VF_1406 8db58d0245f226d9be3984fcdc95b3c4 593 SUPERFAMILY SSF63882 191 362 1.57E-44 T 10-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 19 106 4.1E-18 T 10-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 Gene3D G3DSA:3.50.50.60 114 226 3.4E-19 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 SUPERFAMILY SSF46548 15 129 2.93E-22 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 SUPERFAMILY SSF51971 118 360 2.35E-58 T 10-10-2018 VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 SUPERFAMILY SSF46548 409 552 1.44E-18 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 Gene3D G3DSA:1.10.1060.10 6 113 5.3E-26 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 119 401 2.7E-28 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 533 544 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 PRINTS PR00419 Adrenodoxin reductase family signature 185 195 9.7E-22 T 10-10-2018 VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 PRINTS PR00419 Adrenodoxin reductase family signature 120 142 9.7E-22 T 10-10-2018 VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 PRINTS PR00419 Adrenodoxin reductase family signature 286 299 9.7E-22 T 10-10-2018 VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 PRINTS PR00419 Adrenodoxin reductase family signature 143 156 9.7E-22 T 10-10-2018 VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 PRINTS PR00419 Adrenodoxin reductase family signature 252 266 9.7E-22 T 10-10-2018 VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 Pfam PF13534 4Fe-4S dicluster domain 489 547 9.5E-5 T 10-10-2018 VF_A0100 ad7fc2db38e5989623e669a314c00bb7 598 Gene3D G3DSA:3.50.50.60 227 359 2.8E-36 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0548 6af0e9faeb0ead2586bff4d2e177521d 457 Gene3D G3DSA:1.20.120.140 4 305 1.7E-121 T 10-10-2018 VF_0548 6af0e9faeb0ead2586bff4d2e177521d 457 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 1.1E-21 T 10-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VF_0548 6af0e9faeb0ead2586bff4d2e177521d 457 Gene3D G3DSA:1.10.260.30 328 454 6.5E-44 T 10-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 VF_0548 6af0e9faeb0ead2586bff4d2e177521d 457 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 5.5E-177 T 10-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 VF_0548 6af0e9faeb0ead2586bff4d2e177521d 457 SMART SM00382 99 247 6.8E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0548 6af0e9faeb0ead2586bff4d2e177521d 457 SUPERFAMILY SSF52540 42 353 2.15E-57 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0548 6af0e9faeb0ead2586bff4d2e177521d 457 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 10-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VF_0548 6af0e9faeb0ead2586bff4d2e177521d 457 SMART SM00963 1 86 1.1E-35 T 10-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VF_0548 6af0e9faeb0ead2586bff4d2e177521d 457 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 1.9E-74 T 10-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VF_0548 6af0e9faeb0ead2586bff4d2e177521d 457 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 453 33.9 T 10-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 VF_0548 6af0e9faeb0ead2586bff4d2e177521d 457 SMART SM00962 100 296 8.7E-114 T 10-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VF_0548 6af0e9faeb0ead2586bff4d2e177521d 457 SUPERFAMILY SSF47446 329 430 1.64E-37 T 10-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 VF_0548 6af0e9faeb0ead2586bff4d2e177521d 457 Gene3D G3DSA:3.40.50.300 90 285 1.7E-121 T 10-10-2018 VF_0548 6af0e9faeb0ead2586bff4d2e177521d 457 Pfam PF02978 Signal peptide binding domain 329 427 1.9E-32 T 10-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 VF_A0783 b7ec68bba1ee778ae4ab6816e952bd1b 255 Gene3D G3DSA:3.40.50.300 2 255 2.0E-57 T 10-10-2018 VF_A0783 b7ec68bba1ee778ae4ab6816e952bd1b 255 SMART SM00382 26 215 4.2E-15 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0783 b7ec68bba1ee778ae4ab6816e952bd1b 255 SUPERFAMILY SSF52540 4 229 6.12E-52 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0783 b7ec68bba1ee778ae4ab6816e952bd1b 255 Pfam PF00005 ABC transporter 21 166 2.8E-28 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0783 b7ec68bba1ee778ae4ab6816e952bd1b 255 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0302 8e87376a58c29c674b7fd7de81f8c096 659 SUPERFAMILY SSF58104 352 653 1.92E-60 T 10-10-2018 VF_A0302 8e87376a58c29c674b7fd7de81f8c096 659 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 448 617 2.4E-44 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0302 8e87376a58c29c674b7fd7de81f8c096 659 Gene3D G3DSA:1.10.287.950 322 653 2.2E-58 T 10-10-2018 VF_A0302 8e87376a58c29c674b7fd7de81f8c096 659 SMART SM00283 390 651 1.9E-52 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0302 8e87376a58c29c674b7fd7de81f8c096 659 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 488 515 3.1E-19 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0302 8e87376a58c29c674b7fd7de81f8c096 659 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 517 546 3.1E-19 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0302 8e87376a58c29c674b7fd7de81f8c096 659 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 299 319 3.1E-19 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_0355 c8d0e06982708728cbfc169a2f6ac0d6 659 Pfam PF17157 Gammaproteobacterial periplasmic sensor domain 40 133 6.7E-25 T 10-10-2018 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 VF_0355 c8d0e06982708728cbfc169a2f6ac0d6 659 SUPERFAMILY SSF141868 407 636 1.11E-38 T 10-10-2018 IPR035919 EAL domain superfamily VF_0355 c8d0e06982708728cbfc169a2f6ac0d6 659 Pfam PF00990 Diguanylate cyclase, GGDEF domain 229 381 8.3E-21 T 10-10-2018 IPR000160 GGDEF domain VF_0355 c8d0e06982708728cbfc169a2f6ac0d6 659 Gene3D G3DSA:3.20.20.450 398 649 1.9E-39 T 10-10-2018 IPR035919 EAL domain superfamily VF_0355 c8d0e06982708728cbfc169a2f6ac0d6 659 SMART SM00052 397 639 2.2E-14 T 10-10-2018 IPR001633 EAL domain VF_0355 c8d0e06982708728cbfc169a2f6ac0d6 659 SUPERFAMILY SSF55073 233 387 2.43E-17 T 10-10-2018 IPR029787 Nucleotide cyclase VF_0355 c8d0e06982708728cbfc169a2f6ac0d6 659 Gene3D G3DSA:3.30.70.270 212 387 1.6E-21 T 10-10-2018 VF_0355 c8d0e06982708728cbfc169a2f6ac0d6 659 Pfam PF00563 EAL domain 402 636 2.2E-46 T 10-10-2018 IPR001633 EAL domain VF_0355 c8d0e06982708728cbfc169a2f6ac0d6 659 SMART SM00267 216 386 2.8E-14 T 10-10-2018 IPR000160 GGDEF domain VF_0418 205fe38aec3d4c866240cfa3d2c2bc23 128 Gene3D G3DSA:1.10.3830.10 9 127 7.2E-40 T 10-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 VF_0418 205fe38aec3d4c866240cfa3d2c2bc23 128 Pfam PF01219 Prokaryotic diacylglycerol kinase 23 123 2.7E-34 T 10-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 VF_0418 205fe38aec3d4c866240cfa3d2c2bc23 128 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 76 87 - T 10-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 VF_2114 f5c3a82d2e82942a2745a0e2719307dc 223 SUPERFAMILY SSF51658 1 222 6.94E-79 T 10-10-2018 IPR036237 Xylose isomerase-like superfamily VF_2114 f5c3a82d2e82942a2745a0e2719307dc 223 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 2 222 2.8E-84 T 10-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 VF_2114 f5c3a82d2e82942a2745a0e2719307dc 223 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 10-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 VF_2114 f5c3a82d2e82942a2745a0e2719307dc 223 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 10-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 VF_2114 f5c3a82d2e82942a2745a0e2719307dc 223 Gene3D G3DSA:3.20.20.150 1 223 1.1E-89 T 10-10-2018 VF_2114 f5c3a82d2e82942a2745a0e2719307dc 223 Pfam PF01261 Xylose isomerase-like TIM barrel 20 222 4.4E-35 T 10-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain VF_2114 f5c3a82d2e82942a2745a0e2719307dc 223 SMART SM00518 3 223 4.3E-72 T 10-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 VF_1168 dafb65d70eac034080631e4a820819cd 1226 Gene3D G3DSA:3.40.50.300 1 325 4.0E-46 T 10-10-2018 VF_1168 dafb65d70eac034080631e4a820819cd 1226 SUPERFAMILY SSF52540 1 539 3.01E-9 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1168 dafb65d70eac034080631e4a820819cd 1226 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1114 1179 2.9E-15 T 10-10-2018 VF_1168 dafb65d70eac034080631e4a820819cd 1226 Pfam PF13476 AAA domain 5 238 4.9E-18 T 10-10-2018 IPR038729 Rad50/SbcC-type AAA domain VF_1168 dafb65d70eac034080631e4a820819cd 1226 SUPERFAMILY SSF52540 1 1212 1.34E-34 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1168 dafb65d70eac034080631e4a820819cd 1226 Gene3D G3DSA:3.40.50.300 968 1219 2.3E-28 T 10-10-2018 VF_1893 dfc4015bc72cd375c5171c81f9e1902a 322 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 311 3.0E-133 T 10-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 VF_1893 dfc4015bc72cd375c5171c81f9e1902a 322 Gene3D G3DSA:3.40.50.1100 43 145 9.3E-124 T 10-10-2018 VF_1893 dfc4015bc72cd375c5171c81f9e1902a 322 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 10-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 VF_1893 dfc4015bc72cd375c5171c81f9e1902a 322 SUPERFAMILY SSF53686 4 309 1.83E-95 T 10-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VF_1893 dfc4015bc72cd375c5171c81f9e1902a 322 Gene3D G3DSA:3.40.50.1100 12 306 9.3E-124 T 10-10-2018 VF_1893 dfc4015bc72cd375c5171c81f9e1902a 322 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 311 8.7E-140 T 10-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 VF_1893 dfc4015bc72cd375c5171c81f9e1902a 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 298 6.8E-68 T 10-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VF_0026 19a85c629cb61f2c06179b9bca98d0a5 205 Pfam PF01205 Uncharacterized protein family UPF0029 20 127 5.7E-27 T 10-10-2018 IPR001498 Impact, N-terminal VF_0026 19a85c629cb61f2c06179b9bca98d0a5 205 Pfam PF09186 Domain of unknown function (DUF1949) 143 196 8.2E-14 T 10-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal VF_0026 19a85c629cb61f2c06179b9bca98d0a5 205 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 82 111 - T 10-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site VF_0026 19a85c629cb61f2c06179b9bca98d0a5 205 Gene3D G3DSA:3.30.230.30 2 136 2.0E-49 T 10-10-2018 IPR036956 Impact, N-terminal domain superfamily VF_0026 19a85c629cb61f2c06179b9bca98d0a5 205 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 6 196 4.4E-70 T 10-10-2018 IPR015796 Impact family, bacterial/archaeal VF_0026 19a85c629cb61f2c06179b9bca98d0a5 205 Gene3D G3DSA:3.30.70.240 138 198 2.7E-5 T 10-10-2018 VF_0026 19a85c629cb61f2c06179b9bca98d0a5 205 SUPERFAMILY SSF54980 139 201 4.75E-13 T 10-10-2018 IPR035647 EF-G domain III/V-like VF_0026 19a85c629cb61f2c06179b9bca98d0a5 205 SUPERFAMILY SSF54211 5 133 2.58E-42 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_0450 c66ac9d2a38fc67b3eb58e531cf70419 579 Gene3D G3DSA:3.90.1640.30 45 323 2.8E-87 T 10-10-2018 VF_0450 c66ac9d2a38fc67b3eb58e531cf70419 579 Pfam PF02272 DHHA1 domain 319 450 3.4E-27 T 10-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 VF_0450 c66ac9d2a38fc67b3eb58e531cf70419 579 SUPERFAMILY SSF64182 45 463 2.75E-115 T 10-10-2018 IPR038763 DHH phosphoesterase superfamily VF_0450 c66ac9d2a38fc67b3eb58e531cf70419 579 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 20 575 9.2E-158 T 10-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 VF_0450 c66ac9d2a38fc67b3eb58e531cf70419 579 Pfam PF01368 DHH family 71 204 1.7E-8 T 10-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 VF_0450 c66ac9d2a38fc67b3eb58e531cf70419 579 Gene3D G3DSA:3.10.310.30 325 455 2.2E-31 T 10-10-2018 VF_2404 4d4dd44152572873455e23a311128c3f 160 PIRSF PIRSF016548 1 160 5.5E-59 T 10-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 VF_2404 4d4dd44152572873455e23a311128c3f 160 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 150 1.0E-53 T 10-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 VF_2404 4d4dd44152572873455e23a311128c3f 160 Gene3D G3DSA:1.20.120.1370 1 152 1.1E-49 T 10-10-2018 IPR038309 Rsd/AlgQ superfamily VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 336 454 3.7E-16 T 10-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 151 244 1.1E-7 T 10-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1338 0.0 T 10-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Gene3D G3DSA:2.40.270.10 790 832 1.1E-6 T 10-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Gene3D G3DSA:2.40.50.150 833 955 1.0E-43 T 10-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Gene3D G3DSA:3.90.1110.10 304 439 3.3E-34 T 10-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Pfam PF04563 RNA polymerase beta subunit 26 500 3.5E-55 T 10-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Gene3D G3DSA:3.90.1110.10 158 255 2.7E-27 T 10-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Pfam PF04560 RNA polymerase Rpb2, domain 7 1265 1339 3.3E-27 T 10-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Pfam PF00562 RNA polymerase Rpb2, domain 6 717 1263 1.0E-155 T 10-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Gene3D G3DSA:3.90.1800.10 1251 1304 8.2E-11 T 10-10-2018 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 SUPERFAMILY SSF64484 12 1341 0.0 T 10-10-2018 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 656 2.2E-22 T 10-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Gene3D G3DSA:2.40.270.10 1001 1241 1.4E-86 T 10-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Gene3D G3DSA:2.40.50.100 714 788 4.4E-32 T 10-10-2018 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Gene3D G3DSA:3.90.1100.10 647 713 4.4E-21 T 10-10-2018 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1063 1075 - T 10-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Gene3D G3DSA:3.90.1100.10 19 157 3.9E-49 T 10-10-2018 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Gene3D G3DSA:3.90.1100.10 440 628 1.6E-68 T 10-10-2018 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1341 12.291 T 10-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2414 89953a9c8898d7c460ba4286cbc4452a 1342 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 3.2E-29 T 10-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_1035 d40fd2ffd7e2522d07b3a7e9c0fb550e 206 Pfam PF01300 Telomere recombination 23 198 5.0E-44 T 10-10-2018 IPR006070 YrdC-like domain GO:0003725 VF_1035 d40fd2ffd7e2522d07b3a7e9c0fb550e 206 Gene3D G3DSA:3.90.870.10 1 205 1.7E-66 T 10-10-2018 VF_1035 d40fd2ffd7e2522d07b3a7e9c0fb550e 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 200 2.4E-68 T 10-10-2018 IPR006070 YrdC-like domain GO:0003725 VF_1035 d40fd2ffd7e2522d07b3a7e9c0fb550e 206 SUPERFAMILY SSF55821 1 203 1.22E-62 T 10-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VF_2418 a000cba77bcd1ff9244e906dd417d469 234 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 1.9E-51 T 10-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein VF_2418 a000cba77bcd1ff9244e906dd417d469 234 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 42.971 T 10-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 VF_2418 a000cba77bcd1ff9244e906dd417d469 234 Gene3D G3DSA:3.30.190.20 21 225 6.2E-80 T 10-10-2018 VF_2418 a000cba77bcd1ff9244e906dd417d469 234 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 10-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_2418 a000cba77bcd1ff9244e906dd417d469 234 PIRSF PIRSF002155 1 227 8.4E-79 T 10-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_2418 a000cba77bcd1ff9244e906dd417d469 234 SUPERFAMILY SSF56808 6 225 1.7E-81 T 10-10-2018 IPR023674 Ribosomal protein L1-like VF_2418 a000cba77bcd1ff9244e906dd417d469 234 Gene3D G3DSA:3.40.50.790 68 159 6.2E-80 T 10-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich VF_2418 a000cba77bcd1ff9244e906dd417d469 234 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 1.1E-105 T 10-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 VF_1167 6d531afe2b8a17de1e7e115dd99ab3f4 414 Gene3D G3DSA:3.30.160.720 283 344 1.6E-22 T 10-10-2018 VF_1167 6d531afe2b8a17de1e7e115dd99ab3f4 414 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 281 378 2.7E-26 T 10-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain VF_1167 6d531afe2b8a17de1e7e115dd99ab3f4 414 SUPERFAMILY SSF56300 1 340 8.26E-59 T 10-10-2018 VF_1167 6d531afe2b8a17de1e7e115dd99ab3f4 414 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 259 5.9E-69 T 10-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 VF_1167 6d531afe2b8a17de1e7e115dd99ab3f4 414 Pfam PF00149 Calcineurin-like phosphoesterase 1 231 9.9E-14 T 10-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VF_1167 6d531afe2b8a17de1e7e115dd99ab3f4 414 Gene3D G3DSA:3.60.21.10 1 282 1.3E-87 T 10-10-2018 IPR029052 Metallo-dependent phosphatase-like VF_0274 109a5d51f3a1a09eaa1861877423f012 324 SUPERFAMILY SSF53850 27 323 9.32E-88 T 10-10-2018 VF_0274 109a5d51f3a1a09eaa1861877423f012 324 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 9 321 5.6E-112 T 10-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family VF_0274 109a5d51f3a1a09eaa1861877423f012 324 Pfam PF16868 NMT1-like family 32 321 4.2E-95 T 10-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family VF_0274 109a5d51f3a1a09eaa1861877423f012 324 Gene3D G3DSA:3.40.190.10 119 257 1.5E-109 T 10-10-2018 VF_0274 109a5d51f3a1a09eaa1861877423f012 324 Gene3D G3DSA:3.40.190.10 32 321 1.5E-109 T 10-10-2018 VF_2282 de652585c59d0979b9f27affaec1626a 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 242 249 - T 10-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 VF_2282 de652585c59d0979b9f27affaec1626a 485 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 271 282 - T 10-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VF_2282 de652585c59d0979b9f27affaec1626a 485 Gene3D G3DSA:3.40.605.10 7 448 1.1E-138 T 10-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VF_2282 de652585c59d0979b9f27affaec1626a 485 Pfam PF00171 Aldehyde dehydrogenase family 9 454 1.9E-120 T 10-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VF_2282 de652585c59d0979b9f27affaec1626a 485 SUPERFAMILY SSF53720 2 449 2.09E-123 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VF_2282 de652585c59d0979b9f27affaec1626a 485 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 3 484 1.7E-224 T 10-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 VF_2282 de652585c59d0979b9f27affaec1626a 485 Gene3D G3DSA:3.40.309.10 247 436 1.1E-138 T 10-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VF_2282 de652585c59d0979b9f27affaec1626a 485 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 1 485 54.715 T 10-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 SUPERFAMILY SSF51338 2 177 4.54E-63 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 Gene3D G3DSA:2.30.40.10 4 480 2.3E-296 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 Pfam PF00449 Urease alpha-subunit, N-terminal domain 3 119 3.2E-57 T 10-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 Gene3D G3DSA:3.20.20.140 129 567 2.3E-296 T 10-10-2018 VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 4 567 2.4E-290 T 10-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 ProSitePatterns PS01120 Urease nickel ligands signature. 127 140 - T 10-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 334 350 7.9E-35 T 10-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 295 312 7.9E-35 T 10-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 401 416 7.9E-35 T 10-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 427 440 7.9E-35 T 10-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 SUPERFAMILY SSF51556 130 567 3.78E-196 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 Hamap MF_01953 Urease subunit alpha [ureC]. 2 567 56.928 T 10-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 SUPERFAMILY SSF51338 422 477 3.56E-5 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 Pfam PF01979 Amidohydrolase family 125 451 1.9E-81 T 10-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VF_0673 1d999b3c5a56068f110ff6075d697b1e 567 ProSitePatterns PS00145 Urease active site. 317 333 - T 10-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 VF_2168 680bd7818048578276f0e36427dbeb2f 161 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 132 2.3E-47 T 10-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VF_2168 680bd7818048578276f0e36427dbeb2f 161 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 133 6.8E-38 T 10-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VF_2168 680bd7818048578276f0e36427dbeb2f 161 Gene3D G3DSA:3.30.70.560 1 159 6.2E-60 T 10-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VF_2168 680bd7818048578276f0e36427dbeb2f 161 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 10-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VF_2168 680bd7818048578276f0e36427dbeb2f 161 SUPERFAMILY SSF55083 1 158 9.81E-56 T 10-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VF_A1020 e6a9aeee05165d8e17f99dde11fc9694 105 Pfam PF01740 STAS domain 6 102 3.0E-14 T 10-10-2018 IPR002645 STAS domain VF_A1020 e6a9aeee05165d8e17f99dde11fc9694 105 Gene3D G3DSA:3.30.750.24 4 105 1.1E-18 T 10-10-2018 IPR036513 STAS domain superfamily VF_A1020 e6a9aeee05165d8e17f99dde11fc9694 105 SUPERFAMILY SSF52091 5 101 1.81E-21 T 10-10-2018 IPR036513 STAS domain superfamily VF_1050 499001f513dfb0fcaaa42d2bddc2f981 81 Pfam PF10692 Protein of unknown function (DUF2498) 4 80 1.7E-41 T 10-10-2018 IPR019633 Protein of unknown function DUF2498 VF_1050 499001f513dfb0fcaaa42d2bddc2f981 81 Gene3D G3DSA:1.10.1900.30 8 76 2.2E-35 T 10-10-2018 IPR038191 YciN superfamily VF_1631 ba10b4a156ccdf3af8d8337bcfc5a15f 173 Gene3D G3DSA:1.10.287.1050 37 122 6.8E-30 T 10-10-2018 IPR027454 Histone-like protein H-NS, N-terminal GO:0046983 VF_1631 ba10b4a156ccdf3af8d8337bcfc5a15f 173 SUPERFAMILY SSF81273 131 173 1.02E-10 T 10-10-2018 VF_1631 ba10b4a156ccdf3af8d8337bcfc5a15f 173 PIRSF PIRSF002096 40 173 7.8E-54 T 10-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 VF_1631 ba10b4a156ccdf3af8d8337bcfc5a15f 173 Pfam PF00816 H-NS histone family 71 167 1.6E-19 T 10-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 VF_1631 ba10b4a156ccdf3af8d8337bcfc5a15f 173 SMART SM00528 126 173 1.6E-22 T 10-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 VF_1631 ba10b4a156ccdf3af8d8337bcfc5a15f 173 Gene3D G3DSA:4.10.430.10 130 173 2.1E-22 T 10-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 VF_1631 ba10b4a156ccdf3af8d8337bcfc5a15f 173 SUPERFAMILY SSF81273 41 97 2.55E-16 T 10-10-2018 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 SUPERFAMILY SSF53187 10 482 3.55E-61 T 10-10-2018 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 Gene3D G3DSA:3.40.630.10 368 484 1.2E-23 T 10-10-2018 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 Pfam PF01546 Peptidase family M20/M25/M40 73 478 1.7E-21 T 10-10-2018 IPR002933 Peptidase M20 GO:0016787 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 Gene3D G3DSA:3.40.630.10 1 227 2.3E-63 T 10-10-2018 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 PIRSF PIRSF016599 1 484 1.1E-214 T 10-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 PRINTS PR00934 X-His dipeptidase (M25) signature 362 380 8.0E-91 T 10-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 PRINTS PR00934 X-His dipeptidase (M25) signature 159 177 8.0E-91 T 10-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 PRINTS PR00934 X-His dipeptidase (M25) signature 449 471 8.0E-91 T 10-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 PRINTS PR00934 X-His dipeptidase (M25) signature 251 270 8.0E-91 T 10-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 PRINTS PR00934 X-His dipeptidase (M25) signature 135 152 8.0E-91 T 10-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 PRINTS PR00934 X-His dipeptidase (M25) signature 427 443 8.0E-91 T 10-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 PRINTS PR00934 X-His dipeptidase (M25) signature 80 99 8.0E-91 T 10-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 PRINTS PR00934 X-His dipeptidase (M25) signature 101 119 8.0E-91 T 10-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 PRINTS PR00934 X-His dipeptidase (M25) signature 206 223 8.0E-91 T 10-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 Pfam PF07687 Peptidase dimerisation domain 207 292 6.7E-8 T 10-10-2018 IPR011650 Peptidase M20, dimerisation domain VF_0736 af5ddaa4f2d2bb3721ab90da4435a10b 484 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 8 481 8.5E-182 T 10-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 Gene3D G3DSA:1.10.287.130 333 431 1.7E-25 T 10-10-2018 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 Pfam PF00072 Response regulator receiver domain 620 730 5.1E-21 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 Pfam PF00512 His Kinase A (phospho-acceptor) domain 369 432 9.7E-18 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 SMART SM00387 480 595 5.8E-33 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 SUPERFAMILY SSF52172 616 733 1.27E-27 T 10-10-2018 IPR011006 CheY-like superfamily VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 Gene3D G3DSA:3.30.450.220 45 202 3.8E-52 T 10-10-2018 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 ProDom PD142495 MEMBRANE SENSOR TRANSFERASE LUXQ 2.7.3.- TRANSMEMBRANE INNER PHOSPHORYLATION SENSORY AUTOINDUCER 3 357 0.0 T 10-10-2018 IPR015387 LuxQ, periplasmic GO:0004673|GO:0016791 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 SUPERFAMILY SSF103190 47 264 2.9E-57 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 Gene3D G3DSA:3.30.565.10 434 597 4.6E-44 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 SUPERFAMILY SSF55874 422 596 2.1E-41 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 SMART SM00448 618 730 7.8E-24 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 SUPERFAMILY SSF47384 357 434 2.94E-18 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 Gene3D G3DSA:3.40.50.2300 598 734 1.3E-29 T 10-10-2018 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 SMART SM00388 368 433 2.1E-19 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 PRINTS PR00344 Bacterial sensor protein C-terminal signature 579 592 7.1E-15 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 PRINTS PR00344 Bacterial sensor protein C-terminal signature 520 534 7.1E-15 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 PRINTS PR00344 Bacterial sensor protein C-terminal signature 555 573 7.1E-15 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 PRINTS PR00344 Bacterial sensor protein C-terminal signature 538 548 7.1E-15 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 Pfam PF09308 LuxQ, periplasmic 35 273 1.2E-89 T 10-10-2018 IPR015387 LuxQ, periplasmic GO:0004673|GO:0016791 VF_0708 c2c452c5ccca167c6f6c1b0a9c2824a6 744 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 481 592 8.8E-25 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0060 306fccce2b97e7531f2086859ac9c91d 614 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 455 5.0E-162 T 10-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 VF_0060 306fccce2b97e7531f2086859ac9c91d 614 SUPERFAMILY SSF143968 483 612 3.66E-36 T 10-10-2018 VF_0060 306fccce2b97e7531f2086859ac9c91d 614 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 475 565 3.0E-21 T 10-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 VF_0060 306fccce2b97e7531f2086859ac9c91d 614 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 12 431 2.1E-158 T 10-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 VF_0060 306fccce2b97e7531f2086859ac9c91d 614 Gene3D G3DSA:3.40.1670.10 337 454 5.3E-44 T 10-10-2018 VF_0060 306fccce2b97e7531f2086859ac9c91d 614 Gene3D G3DSA:3.40.1670.10 480 579 9.4E-25 T 10-10-2018 VF_0060 306fccce2b97e7531f2086859ac9c91d 614 SUPERFAMILY SSF143968 323 459 6.02E-50 T 10-10-2018 VF_0060 306fccce2b97e7531f2086859ac9c91d 614 Gene3D G3DSA:1.20.5.570 580 614 4.1E-18 T 10-10-2018 VF_0060 306fccce2b97e7531f2086859ac9c91d 614 SUPERFAMILY SSF50475 3 322 7.45E-121 T 10-10-2018 VF_0180 02de8f1fb4a8af298cde028a3c91cd2d 363 Hamap MF_02030 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [wecA]. 4 350 27.435 T 10-10-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819|MetaCyc: PWY-7905 VF_0180 02de8f1fb4a8af298cde028a3c91cd2d 363 Pfam PF00953 Glycosyl transferase family 4 69 231 4.4E-29 T 10-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 VF_0180 02de8f1fb4a8af298cde028a3c91cd2d 363 TIGRFAM TIGR02380 ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 4 347 6.3E-153 T 10-10-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819|MetaCyc: PWY-7905 VF_2105 fe0e36d4fdc7861fc78135c4d8460738 218 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 213 1.0E-57 T 10-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 VF_2105 fe0e36d4fdc7861fc78135c4d8460738 218 SUPERFAMILY SSF100950 1 146 8.37E-47 T 10-10-2018 IPR037171 NagB/RpiA transferase-like VF_2105 fe0e36d4fdc7861fc78135c4d8460738 218 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 217 33.733 T 10-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 VF_2105 fe0e36d4fdc7861fc78135c4d8460738 218 Gene3D G3DSA:3.30.70.260 125 196 4.4E-79 T 10-10-2018 VF_2105 fe0e36d4fdc7861fc78135c4d8460738 218 SUPERFAMILY SSF75445 127 198 1.28E-23 T 10-10-2018 VF_2105 fe0e36d4fdc7861fc78135c4d8460738 218 Gene3D G3DSA:3.40.50.1360 7 207 4.4E-79 T 10-10-2018 VF_2105 fe0e36d4fdc7861fc78135c4d8460738 218 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 215 2.4E-69 T 10-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 VF_0984 f0a0a613920b1abbcdc9a79192228442 129 Pfam PF00031 Cystatin domain 53 112 1.4E-8 T 10-10-2018 IPR000010 Cystatin domain GO:0004869 VF_0984 f0a0a613920b1abbcdc9a79192228442 129 SUPERFAMILY SSF54403 43 115 5.95E-16 T 10-10-2018 VF_0984 f0a0a613920b1abbcdc9a79192228442 129 Gene3D G3DSA:3.10.450.10 40 129 5.9E-9 T 10-10-2018 VF_0375 faedaf9be02f398cc26da7a83b0775cd 191 TIGRFAM TIGR00172 maf: septum formation protein Maf 1 187 3.3E-55 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 VF_0375 faedaf9be02f398cc26da7a83b0775cd 191 Gene3D G3DSA:3.90.950.10 3 191 8.8E-68 T 10-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VF_0375 faedaf9be02f398cc26da7a83b0775cd 191 SUPERFAMILY SSF52972 3 189 7.19E-61 T 10-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VF_0375 faedaf9be02f398cc26da7a83b0775cd 191 PIRSF PIRSF006305 1 191 3.9E-55 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 VF_0375 faedaf9be02f398cc26da7a83b0775cd 191 Pfam PF02545 Maf-like protein 5 189 8.6E-58 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 VF_0375 faedaf9be02f398cc26da7a83b0775cd 191 Hamap MF_00528 Septum formation protein Maf [maf]. 4 191 29.484 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 VF_0759 c14d422b2e1f9b38f9d8eb309717c19b 474 Gene3D G3DSA:3.80.30.20 145 378 7.5E-82 T 10-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VF_0759 c14d422b2e1f9b38f9d8eb309717c19b 474 Pfam PF01938 TRAM domain 383 440 1.0E-16 T 10-10-2018 IPR002792 TRAM domain VF_0759 c14d422b2e1f9b38f9d8eb309717c19b 474 Pfam PF00919 Uncharacterized protein family UPF0004 4 104 2.1E-29 T 10-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 VF_0759 c14d422b2e1f9b38f9d8eb309717c19b 474 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 437 1.2E-150 T 10-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 VF_0759 c14d422b2e1f9b38f9d8eb309717c19b 474 Gene3D G3DSA:3.40.50.12160 3 139 3.8E-34 T 10-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily VF_0759 c14d422b2e1f9b38f9d8eb309717c19b 474 Pfam PF04055 Radical SAM superfamily 151 325 1.8E-26 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_0759 c14d422b2e1f9b38f9d8eb309717c19b 474 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 440 71.887 T 10-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 VF_0759 c14d422b2e1f9b38f9d8eb309717c19b 474 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 440 5.2E-198 T 10-10-2018 VF_0759 c14d422b2e1f9b38f9d8eb309717c19b 474 SUPERFAMILY SSF102114 124 373 1.57E-59 T 10-10-2018 VF_0759 c14d422b2e1f9b38f9d8eb309717c19b 474 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 151 171 - T 10-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 VF_0759 c14d422b2e1f9b38f9d8eb309717c19b 474 SMART SM00729 147 367 2.0E-60 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VF_A0806 46340d1c2ed779b166edac0edb13213a 405 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 10 29 - T 10-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VF_A0806 46340d1c2ed779b166edac0edb13213a 405 Gene3D G3DSA:3.90.550.10 2 286 3.6E-85 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_A0806 46340d1c2ed779b166edac0edb13213a 405 SUPERFAMILY SSF51161 291 400 1.68E-14 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_A0806 46340d1c2ed779b166edac0edb13213a 405 Gene3D G3DSA:2.160.10.10 287 402 5.3E-32 T 10-10-2018 VF_A0806 46340d1c2ed779b166edac0edb13213a 405 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 95 103 - T 10-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VF_A0806 46340d1c2ed779b166edac0edb13213a 405 Pfam PF00483 Nucleotidyl transferase 6 273 3.2E-65 T 10-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VF_A0806 46340d1c2ed779b166edac0edb13213a 405 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 4 377 2.1E-151 T 10-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VF_A0806 46340d1c2ed779b166edac0edb13213a 405 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 1 403 48.074 T 10-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VF_A0806 46340d1c2ed779b166edac0edb13213a 405 SUPERFAMILY SSF53448 4 358 3.05E-71 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_A0806 46340d1c2ed779b166edac0edb13213a 405 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 193 203 - T 10-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VF_1133 3807fb3e8ff9811ae9a657558d11237c 669 SMART SM00304 340 392 2.0E-4 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_1133 3807fb3e8ff9811ae9a657558d11237c 669 SMART SM00283 407 668 1.8E-64 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1133 3807fb3e8ff9811ae9a657558d11237c 669 SUPERFAMILY SSF58104 360 669 5.49E-72 T 10-10-2018 VF_1133 3807fb3e8ff9811ae9a657558d11237c 669 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 459 635 1.5E-44 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1133 3807fb3e8ff9811ae9a657558d11237c 669 Gene3D G3DSA:1.10.287.950 339 669 9.7E-70 T 10-10-2018 VF_A0372 9c3fecd21490403c2ada0fbac5590ebe 419 SUPERFAMILY SSF50182 192 259 2.52E-11 T 10-10-2018 IPR010920 LSM domain superfamily VF_A0372 9c3fecd21490403c2ada0fbac5590ebe 419 Pfam PF00924 Mechanosensitive ion channel 150 401 1.6E-41 T 10-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VF_A0372 9c3fecd21490403c2ada0fbac5590ebe 419 Gene3D G3DSA:2.30.30.60 209 255 5.2E-6 T 10-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VF_A0822 6daae94dc801298104804f3304a47b02 85 Gene3D G3DSA:1.20.58.660 11 84 1.3E-12 T 10-10-2018 VF_A0822 6daae94dc801298104804f3304a47b02 85 Pfam PF04325 Protein of unknown function (DUF465) 29 74 1.2E-10 T 10-10-2018 IPR007420 Protein of unknown function DUF465 VF_0824 7db61e7b6e0242ae5a3ed287ce483a3e 403 SUPERFAMILY SSF47005 106 149 4.71E-11 T 10-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VF_0824 7db61e7b6e0242ae5a3ed287ce483a3e 403 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 403 1.4E-186 T 10-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 VF_0824 7db61e7b6e0242ae5a3ed287ce483a3e 403 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 10-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VF_0824 7db61e7b6e0242ae5a3ed287ce483a3e 403 Gene3D G3DSA:3.30.559.10 171 403 2.5E-98 T 10-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 VF_0824 7db61e7b6e0242ae5a3ed287ce483a3e 403 Pfam PF00364 Biotin-requiring enzyme 4 76 1.9E-18 T 10-10-2018 IPR000089 Biotin/lipoyl attachment VF_0824 7db61e7b6e0242ae5a3ed287ce483a3e 403 SUPERFAMILY SSF51230 1 87 2.75E-24 T 10-10-2018 IPR011053 Single hybrid motif VF_0824 7db61e7b6e0242ae5a3ed287ce483a3e 403 Gene3D G3DSA:4.10.320.10 102 151 2.5E-20 T 10-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VF_0824 7db61e7b6e0242ae5a3ed287ce483a3e 403 SUPERFAMILY SSF52777 173 402 2.22E-90 T 10-10-2018 VF_0824 7db61e7b6e0242ae5a3ed287ce483a3e 403 Pfam PF02817 e3 binding domain 113 145 9.5E-13 T 10-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 VF_0824 7db61e7b6e0242ae5a3ed287ce483a3e 403 Gene3D G3DSA:2.40.50.100 1 80 1.9E-22 T 10-10-2018 VF_0824 7db61e7b6e0242ae5a3ed287ce483a3e 403 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 173 401 3.4E-82 T 10-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 VF_1500 3157f7a11b817e285c9dcbb2d65d63e8 1279 SMART SM00490 285 385 1.2E-14 T 10-10-2018 IPR001650 Helicase, C-terminal VF_1500 3157f7a11b817e285c9dcbb2d65d63e8 1279 Gene3D G3DSA:3.40.50.300 234 401 5.9E-56 T 10-10-2018 VF_1500 3157f7a11b817e285c9dcbb2d65d63e8 1279 SUPERFAMILY SSF52540 55 575 1.28E-111 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1500 3157f7a11b817e285c9dcbb2d65d63e8 1279 Pfam PF11898 Domain of unknown function (DUF3418) 693 1277 1.3E-231 T 10-10-2018 IPR024590 RNA helicase HrpA, C-terminal VF_1500 3157f7a11b817e285c9dcbb2d65d63e8 1279 SMART SM00487 49 240 8.2E-31 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_1500 3157f7a11b817e285c9dcbb2d65d63e8 1279 Pfam PF04408 Helicase associated domain (HA2) 448 538 3.3E-18 T 10-10-2018 IPR007502 Helicase-associated domain GO:0004386 VF_1500 3157f7a11b817e285c9dcbb2d65d63e8 1279 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 603 680 3.3E-23 T 10-10-2018 IPR011709 Domain of unknown function DUF1605 VF_1500 3157f7a11b817e285c9dcbb2d65d63e8 1279 Gene3D G3DSA:3.40.50.300 8 233 8.8E-80 T 10-10-2018 VF_1500 3157f7a11b817e285c9dcbb2d65d63e8 1279 SMART SM00382 73 365 1.0E-5 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1500 3157f7a11b817e285c9dcbb2d65d63e8 1279 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 1 1276 0.0 T 10-10-2018 IPR010222 RNA helicase HrpA GO:0004004 VF_1500 3157f7a11b817e285c9dcbb2d65d63e8 1279 SMART SM00847 445 540 8.3E-35 T 10-10-2018 IPR007502 Helicase-associated domain GO:0004386 VF_1500 3157f7a11b817e285c9dcbb2d65d63e8 1279 Pfam PF00270 DEAD/DEAH box helicase 66 214 1.3E-8 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_1500 3157f7a11b817e285c9dcbb2d65d63e8 1279 Pfam PF00271 Helicase conserved C-terminal domain 268 384 2.4E-11 T 10-10-2018 IPR001650 Helicase, C-terminal VF_1500 3157f7a11b817e285c9dcbb2d65d63e8 1279 Gene3D G3DSA:1.20.120.1080 429 533 1.5E-18 T 10-10-2018 VF_0421 06b3b4b8d890fe4d5746b328bebd296e 90 PIRSF PIRSF029827 1 90 1.4E-42 T 10-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 VF_0421 06b3b4b8d890fe4d5746b328bebd296e 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 28.161 T 10-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 VF_0421 06b3b4b8d890fe4d5746b328bebd296e 90 SUPERFAMILY SSF111148 1 89 1.19E-40 T 10-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 VF_0421 06b3b4b8d890fe4d5746b328bebd296e 90 Gene3D G3DSA:1.10.3880.10 1 90 6.9E-39 T 10-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 VF_0421 06b3b4b8d890fe4d5746b328bebd296e 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 75 3.0E-39 T 10-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 VF_0421 06b3b4b8d890fe4d5746b328bebd296e 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 1.2E-41 T 10-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 VF_1561 2f2fcca7e9a949a6895b444141cb946f 443 Pfam PF00990 Diguanylate cyclase, GGDEF domain 273 425 6.9E-38 T 10-10-2018 IPR000160 GGDEF domain VF_1561 2f2fcca7e9a949a6895b444141cb946f 443 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 271 428 1.1E-39 T 10-10-2018 IPR000160 GGDEF domain VF_1561 2f2fcca7e9a949a6895b444141cb946f 443 SUPERFAMILY SSF49785 39 210 1.87E-7 T 10-10-2018 IPR008979 Galactose-binding-like domain superfamily VF_1561 2f2fcca7e9a949a6895b444141cb946f 443 Gene3D G3DSA:3.30.70.270 259 429 1.9E-46 T 10-10-2018 VF_1561 2f2fcca7e9a949a6895b444141cb946f 443 SMART SM00267 262 429 2.2E-46 T 10-10-2018 IPR000160 GGDEF domain VF_1561 2f2fcca7e9a949a6895b444141cb946f 443 SUPERFAMILY SSF55073 278 427 2.75E-38 T 10-10-2018 IPR029787 Nucleotide cyclase VF_0318 ddcbe15fa6bccc1215609ed76eeca52f 189 Gene3D G3DSA:2.60.120.10 2 138 3.6E-19 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_0318 ddcbe15fa6bccc1215609ed76eeca52f 189 SUPERFAMILY SSF51206 16 141 3.27E-22 T 10-10-2018 IPR018490 Cyclic nucleotide-binding-like VF_0318 ddcbe15fa6bccc1215609ed76eeca52f 189 Pfam PF00027 Cyclic nucleotide-binding domain 29 107 2.0E-8 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 SMART SM00065 17 163 1.3E-21 T 10-10-2018 IPR003018 GAF domain GO:0005515 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 356 367 - T 10-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 635 650 3.5E-24 T 10-10-2018 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 671 683 3.5E-24 T 10-10-2018 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 483 3.5E-24 T 10-10-2018 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 618 633 3.5E-24 T 10-10-2018 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 Pfam PF00391 PEP-utilising enzyme, mobile domain 326 396 1.3E-15 T 10-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 Gene3D G3DSA:1.10.274.10 195 319 2.4E-55 T 10-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 SUPERFAMILY SSF51621 423 719 7.07E-100 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 Gene3D G3DSA:3.30.450.40 1 163 2.5E-39 T 10-10-2018 IPR029016 GAF-like domain superfamily VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 SUPERFAMILY SSF47831 208 314 4.71E-28 T 10-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 SUPERFAMILY SSF52009 298 417 6.28E-25 T 10-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 427 711 1.1E-97 T 10-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 177 733 6.6E-138 T 10-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 Pfam PF05524 PEP-utilising enzyme, N-terminal 177 299 3.8E-24 T 10-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 Gene3D G3DSA:3.50.30.10 178 404 2.4E-55 T 10-10-2018 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 Gene3D G3DSA:3.20.20.60 405 745 2.9E-106 T 10-10-2018 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 618 636 - T 10-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 Pfam PF01590 GAF domain 18 152 1.1E-12 T 10-10-2018 IPR003018 GAF domain GO:0005515 VF_0457 2f10ac3b8e9e5ae7c6888c8f272a18ce 753 SUPERFAMILY SSF55781 2 166 1.16E-31 T 10-10-2018 VF_A0554 9bd3b2a475a8168c6659ecd4db21b2b6 93 SUPERFAMILY SSF51182 1 93 5.34E-31 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_A0554 9bd3b2a475a8168c6659ecd4db21b2b6 93 Pfam PF06865 Protein of unknown function (DUF1255) 3 92 2.3E-31 T 10-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 VF_A0554 9bd3b2a475a8168c6659ecd4db21b2b6 93 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 1 93 24.11 T 10-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 VF_A0554 9bd3b2a475a8168c6659ecd4db21b2b6 93 Gene3D G3DSA:2.60.120.10 1 93 2.2E-33 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_0224 36040713190d19be01aa7356fa1729e0 74 Pfam PF04102 SlyX 8 74 1.3E-23 T 10-10-2018 IPR007236 SlyX VF_0224 36040713190d19be01aa7356fa1729e0 74 Hamap MF_00715 Protein SlyX [slyX]. 7 74 17.39 T 10-10-2018 IPR007236 SlyX VF_0224 36040713190d19be01aa7356fa1729e0 74 Gene3D G3DSA:1.20.5.300 1 50 1.6E-6 T 10-10-2018 VF_1621 c4a278ccc9876ba8d55aad5b1629568d 151 SMART SM00851 25 118 3.7E-22 T 10-10-2018 IPR011607 Methylglyoxal synthase-like domain VF_1621 c4a278ccc9876ba8d55aad5b1629568d 151 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 11 150 6.2E-64 T 10-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 VF_1621 c4a278ccc9876ba8d55aad5b1629568d 151 SUPERFAMILY SSF52335 4 150 1.7E-58 T 10-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VF_1621 c4a278ccc9876ba8d55aad5b1629568d 151 Pfam PF02142 MGS-like domain 26 117 1.6E-18 T 10-10-2018 IPR011607 Methylglyoxal synthase-like domain VF_1621 c4a278ccc9876ba8d55aad5b1629568d 151 PIRSF PIRSF006614 8 151 1.1E-63 T 10-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 VF_1621 c4a278ccc9876ba8d55aad5b1629568d 151 ProSitePatterns PS01335 Methylglyoxal synthase active site. 65 73 - T 10-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 VF_1621 c4a278ccc9876ba8d55aad5b1629568d 151 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 12 131 32.757 T 10-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 VF_1621 c4a278ccc9876ba8d55aad5b1629568d 151 Gene3D G3DSA:3.40.50.1380 1 151 7.0E-65 T 10-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VF_2422 346b141ec82365fddc65e80d9ec02d6b 125 Hamap MF_00422 Protein translocase subunit SecE [secE]. 66 121 12.729 T 10-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VF_2422 346b141ec82365fddc65e80d9ec02d6b 125 PRINTS PR01650 Bacterial translocase SecE signature 109 125 5.4E-35 T 10-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VF_2422 346b141ec82365fddc65e80d9ec02d6b 125 PRINTS PR01650 Bacterial translocase SecE signature 65 85 5.4E-35 T 10-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VF_2422 346b141ec82365fddc65e80d9ec02d6b 125 PRINTS PR01650 Bacterial translocase SecE signature 89 109 5.4E-35 T 10-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VF_2422 346b141ec82365fddc65e80d9ec02d6b 125 PRINTS PR01650 Bacterial translocase SecE signature 44 65 5.4E-35 T 10-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VF_2422 346b141ec82365fddc65e80d9ec02d6b 125 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 70 122 4.2E-19 T 10-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VF_2422 346b141ec82365fddc65e80d9ec02d6b 125 Gene3D G3DSA:1.20.5.1030 66 123 3.6E-15 T 10-10-2018 IPR038379 SecE superfamily VF_2422 346b141ec82365fddc65e80d9ec02d6b 125 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 69 123 3.9E-16 T 10-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VF_0563 f63b016783ce07fa3c53963c12e455f3 241 Pfam PF13525 Outer membrane lipoprotein 26 234 7.6E-79 T 10-10-2018 IPR039565 Outer membrane lipoprotein BamD-like VF_0563 f63b016783ce07fa3c53963c12e455f3 241 SUPERFAMILY SSF48452 30 119 1.47E-9 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0563 f63b016783ce07fa3c53963c12e455f3 241 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 1 240 37.581 T 10-10-2018 IPR017689 Outer membrane protein assembly factor BamD VF_0563 f63b016783ce07fa3c53963c12e455f3 241 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 3 239 5.9E-80 T 10-10-2018 IPR017689 Outer membrane protein assembly factor BamD VF_0563 f63b016783ce07fa3c53963c12e455f3 241 Gene3D G3DSA:1.25.40.10 28 241 5.3E-56 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0582 4fcbe278a09b41ca35ea8508e6d793e0 1208 Pfam PF12705 PD-(D/E)XK nuclease superfamily 963 1174 1.2E-7 T 10-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type VF_0582 4fcbe278a09b41ca35ea8508e6d793e0 1208 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 8 1202 22.729 T 10-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 VF_0582 4fcbe278a09b41ca35ea8508e6d793e0 1208 Pfam PF00580 UvrD/REP helicase N-terminal domain 7 443 8.8E-67 T 10-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 VF_0582 4fcbe278a09b41ca35ea8508e6d793e0 1208 Gene3D G3DSA:3.40.50.300 452 859 4.7E-155 T 10-10-2018 VF_0582 4fcbe278a09b41ca35ea8508e6d793e0 1208 Gene3D G3DSA:1.10.486.10 595 740 4.7E-155 T 10-10-2018 VF_0582 4fcbe278a09b41ca35ea8508e6d793e0 1208 Gene3D G3DSA:3.90.320.10 907 1208 2.6E-98 T 10-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal VF_0582 4fcbe278a09b41ca35ea8508e6d793e0 1208 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 10 1200 0.0 T 10-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 VF_0582 4fcbe278a09b41ca35ea8508e6d793e0 1208 SUPERFAMILY SSF52540 7 834 9.12E-114 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0582 4fcbe278a09b41ca35ea8508e6d793e0 1208 Gene3D G3DSA:3.40.50.300 10 443 1.6E-155 T 10-10-2018 VF_0582 4fcbe278a09b41ca35ea8508e6d793e0 1208 SUPERFAMILY SSF52980 916 1202 4.93E-81 T 10-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VF_0582 4fcbe278a09b41ca35ea8508e6d793e0 1208 Gene3D G3DSA:1.10.3170.10 164 356 1.6E-155 T 10-10-2018 VF_0582 4fcbe278a09b41ca35ea8508e6d793e0 1208 Pfam PF13361 UvrD-like helicase C-terminal domain 448 829 8.8E-22 T 10-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 VF_1608 59e9bc9d6c048108baa9f7949542249b 414 Gene3D G3DSA:3.90.105.10 29 180 3.6E-145 T 10-10-2018 VF_1608 59e9bc9d6c048108baa9f7949542249b 414 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 182 319 1.3E-34 T 10-10-2018 IPR001453 MoaB/Mog domain VF_1608 59e9bc9d6c048108baa9f7949542249b 414 Pfam PF00994 Probable molybdopterin binding domain 188 322 2.2E-25 T 10-10-2018 IPR001453 MoaB/Mog domain VF_1608 59e9bc9d6c048108baa9f7949542249b 414 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 259 292 - T 10-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 VF_1608 59e9bc9d6c048108baa9f7949542249b 414 Gene3D G3DSA:2.170.190.11 53 147 3.6E-145 T 10-10-2018 VF_1608 59e9bc9d6c048108baa9f7949542249b 414 Gene3D G3DSA:3.40.980.10 181 333 3.6E-145 T 10-10-2018 IPR036425 MoaB/Mog-like domain superfamily VF_1608 59e9bc9d6c048108baa9f7949542249b 414 SMART SM00852 186 323 7.5E-43 T 10-10-2018 IPR001453 MoaB/Mog domain VF_1608 59e9bc9d6c048108baa9f7949542249b 414 Pfam PF03453 MoeA N-terminal region (domain I and II) 10 173 2.8E-45 T 10-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_1608 59e9bc9d6c048108baa9f7949542249b 414 SUPERFAMILY SSF63867 334 411 4.58E-24 T 10-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_1608 59e9bc9d6c048108baa9f7949542249b 414 Pfam PF03454 MoeA C-terminal region (domain IV) 338 409 4.4E-20 T 10-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_1608 59e9bc9d6c048108baa9f7949542249b 414 SUPERFAMILY SSF63882 7 182 4.19E-54 T 10-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_1608 59e9bc9d6c048108baa9f7949542249b 414 SUPERFAMILY SSF53218 183 330 2.36E-42 T 10-10-2018 IPR036425 MoaB/Mog-like domain superfamily VF_1608 59e9bc9d6c048108baa9f7949542249b 414 Gene3D G3DSA:2.40.340.10 334 404 3.6E-145 T 10-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_1306 2d0f5066fec84c2ef76381112c767946 58 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 3 45 6.0E-20 T 10-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type VF_1306 2d0f5066fec84c2ef76381112c767946 58 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 47 2.3E-14 T 10-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type VF_0670 fcccda41b7c180b4e6722f52bad17a84 206 SUPERFAMILY SSF52540 5 199 5.03E-38 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0670 fcccda41b7c180b4e6722f52bad17a84 206 PIRSF PIRSF005624 2 205 8.0E-52 T 10-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 VF_0670 fcccda41b7c180b4e6722f52bad17a84 206 Gene3D G3DSA:3.40.50.300 8 203 1.2E-52 T 10-10-2018 VF_0670 fcccda41b7c180b4e6722f52bad17a84 206 Hamap MF_01389 Urease accessory protein UreG [ureG]. 6 204 47.31 T 10-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 VF_0670 fcccda41b7c180b4e6722f52bad17a84 206 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 10 179 2.5E-41 T 10-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain VF_0670 fcccda41b7c180b4e6722f52bad17a84 206 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 8 199 8.5E-103 T 10-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 VF_1103 b80fde5e4314a64b7e341643c437e2ea 155 Pfam PF04191 Phospholipid methyltransferase 40 142 5.1E-17 T 10-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 VF_1103 b80fde5e4314a64b7e341643c437e2ea 155 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 110 154 3.0E-20 T 10-10-2018 VF_1103 b80fde5e4314a64b7e341643c437e2ea 155 Gene3D G3DSA:1.20.120.1630 4 155 6.1E-26 T 10-10-2018 VF_0091 6e3b6615055d6053a03703e07cced7eb 821 SUPERFAMILY SSF141868 567 811 3.92E-87 T 10-10-2018 IPR035919 EAL domain superfamily VF_0091 6e3b6615055d6053a03703e07cced7eb 821 Pfam PF02743 Cache domain 43 286 1.9E-20 T 10-10-2018 IPR033479 Double Cache domain 1 VF_0091 6e3b6615055d6053a03703e07cced7eb 821 SMART SM00304 337 390 0.0026 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_0091 6e3b6615055d6053a03703e07cced7eb 821 SUPERFAMILY SSF158472 337 388 4.32E-7 T 10-10-2018 VF_0091 6e3b6615055d6053a03703e07cced7eb 821 Pfam PF00563 EAL domain 566 803 3.4E-73 T 10-10-2018 IPR001633 EAL domain VF_0091 6e3b6615055d6053a03703e07cced7eb 821 SUPERFAMILY SSF55073 401 545 3.77E-23 T 10-10-2018 IPR029787 Nucleotide cyclase VF_0091 6e3b6615055d6053a03703e07cced7eb 821 SMART SM00052 560 808 3.1E-109 T 10-10-2018 IPR001633 EAL domain VF_0091 6e3b6615055d6053a03703e07cced7eb 821 Gene3D G3DSA:3.20.20.450 563 819 2.2E-95 T 10-10-2018 IPR035919 EAL domain superfamily VF_0091 6e3b6615055d6053a03703e07cced7eb 821 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 393 543 6.6E-15 T 10-10-2018 IPR000160 GGDEF domain VF_0091 6e3b6615055d6053a03703e07cced7eb 821 Gene3D G3DSA:3.30.70.270 397 562 3.3E-25 T 10-10-2018 VF_0091 6e3b6615055d6053a03703e07cced7eb 821 SMART SM00267 385 550 1.4E-19 T 10-10-2018 IPR000160 GGDEF domain VF_0091 6e3b6615055d6053a03703e07cced7eb 821 Gene3D G3DSA:3.30.450.20 61 194 1.2E-13 T 10-10-2018 VF_0091 6e3b6615055d6053a03703e07cced7eb 821 Gene3D G3DSA:1.20.1480.50 297 396 2.3E-14 T 10-10-2018 VF_0091 6e3b6615055d6053a03703e07cced7eb 821 Pfam PF00990 Diguanylate cyclase, GGDEF domain 397 542 5.9E-21 T 10-10-2018 IPR000160 GGDEF domain VF_A0450 6b211f878f90fbe8914323f20ff17914 510 Gene3D G3DSA:1.20.200.10 198 509 2.6E-124 T 10-10-2018 VF_A0450 6b211f878f90fbe8914323f20ff17914 510 Gene3D G3DSA:1.10.275.10 3 197 1.6E-68 T 10-10-2018 IPR024083 Fumarase/histidase, N-terminal VF_A0450 6b211f878f90fbe8914323f20ff17914 510 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 6 504 3.2E-213 T 10-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VF_A0450 6b211f878f90fbe8914323f20ff17914 510 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 10-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 VF_A0450 6b211f878f90fbe8914323f20ff17914 510 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 3 504 44.078 T 10-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VF_A0450 6b211f878f90fbe8914323f20ff17914 510 SUPERFAMILY SSF48557 8 503 1.26E-191 T 10-10-2018 IPR008948 L-Aspartase-like GO:0003824 VF_A0450 6b211f878f90fbe8914323f20ff17914 510 Pfam PF00221 Aromatic amino acid lyase 11 471 5.1E-188 T 10-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 VF_A1077 0d2afbb460a9817c8a18746977a28864 285 Gene3D G3DSA:1.10.510.10 139 221 4.5E-18 T 10-10-2018 VF_A1077 0d2afbb460a9817c8a18746977a28864 285 Pfam PF01163 RIO1 family 31 219 2.3E-41 T 10-10-2018 VF_A1077 0d2afbb460a9817c8a18746977a28864 285 SMART SM00090 7 237 2.0E-14 T 10-10-2018 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 VF_A1077 0d2afbb460a9817c8a18746977a28864 285 SUPERFAMILY SSF56112 18 225 2.13E-21 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily VF_A1077 0d2afbb460a9817c8a18746977a28864 285 ProSitePatterns PS01245 RIO1/ZK632.3/MJ0444 family signature. 164 175 - T 10-10-2018 IPR018935 RIO kinase, conserved site GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 VF_A1077 0d2afbb460a9817c8a18746977a28864 285 Gene3D G3DSA:3.30.200.20 16 126 1.1E-5 T 10-10-2018 VF_0195 b52f7ba8f1b6ae5201a942bfcbfbf6d9 303 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 212 4.7E-29 T 10-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 VF_0195 b52f7ba8f1b6ae5201a942bfcbfbf6d9 303 Gene3D G3DSA:3.40.50.720 1 283 9.6E-56 T 10-10-2018 VF_0195 b52f7ba8f1b6ae5201a942bfcbfbf6d9 303 SUPERFAMILY SSF51735 1 300 1.17E-59 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1204 e959f64d51576d67a8088e7004de6955 878 SUPERFAMILY SSF101904 532 851 5.49E-110 T 10-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VF_1204 e959f64d51576d67a8088e7004de6955 878 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 505 2.8E-157 T 10-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VF_1204 e959f64d51576d67a8088e7004de6955 878 SUPERFAMILY SSF56719 30 520 5.36E-187 T 10-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VF_1204 e959f64d51576d67a8088e7004de6955 878 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 587 637 6.3E-9 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VF_1204 e959f64d51576d67a8088e7004de6955 878 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 742 786 3.0E-13 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VF_1204 e959f64d51576d67a8088e7004de6955 878 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 692 736 1.6E-14 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VF_1204 e959f64d51576d67a8088e7004de6955 878 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 792 838 3.9E-12 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VF_1204 e959f64d51576d67a8088e7004de6955 878 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 537 583 4.0E-7 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VF_1204 e959f64d51576d67a8088e7004de6955 878 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 644 687 8.4E-8 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VF_1204 e959f64d51576d67a8088e7004de6955 878 SMART SM00434 11 498 2.1E-299 T 10-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VF_1204 e959f64d51576d67a8088e7004de6955 878 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 840 24.65 T 10-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_1204 e959f64d51576d67a8088e7004de6955 878 Gene3D G3DSA:3.90.199.10 33 520 1.4E-235 T 10-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 VF_1204 e959f64d51576d67a8088e7004de6955 878 Gene3D G3DSA:2.120.10.90 534 840 2.7E-124 T 10-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VF_1204 e959f64d51576d67a8088e7004de6955 878 Gene3D G3DSA:3.30.1360.40 236 332 1.4E-235 T 10-10-2018 VF_1204 e959f64d51576d67a8088e7004de6955 878 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 838 0.0 T 10-10-2018 VF_1204 e959f64d51576d67a8088e7004de6955 878 Gene3D G3DSA:1.10.268.10 369 492 1.4E-235 T 10-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VF_A0730 2d7c1e896f117e5e806cd995aaf44fc1 295 Pfam PF03466 LysR substrate binding domain 87 293 1.4E-15 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0730 2d7c1e896f117e5e806cd995aaf44fc1 295 Gene3D G3DSA:1.10.10.10 3 90 3.4E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0730 2d7c1e896f117e5e806cd995aaf44fc1 295 SUPERFAMILY SSF46785 6 85 4.45E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0730 2d7c1e896f117e5e806cd995aaf44fc1 295 SUPERFAMILY SSF53850 86 292 1.45E-21 T 10-10-2018 VF_A0730 2d7c1e896f117e5e806cd995aaf44fc1 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 60 5.7E-17 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0730 2d7c1e896f117e5e806cd995aaf44fc1 295 Gene3D G3DSA:3.40.190.290 91 294 2.6E-14 T 10-10-2018 VF_A0730 2d7c1e896f117e5e806cd995aaf44fc1 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 17 28 1.3E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0730 2d7c1e896f117e5e806cd995aaf44fc1 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 1.3E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0730 2d7c1e896f117e5e806cd995aaf44fc1 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 38 1.3E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1469 ed0a06d7bf90d2724d0d32b9675e29d2 87 Gene3D G3DSA:1.10.260.40 1 87 1.0E-18 T 10-10-2018 VF_1469 ed0a06d7bf90d2724d0d32b9675e29d2 87 Pfam PF01381 Helix-turn-helix 17 67 1.7E-12 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_1469 ed0a06d7bf90d2724d0d32b9675e29d2 87 SMART SM00530 16 71 7.1E-9 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_1469 ed0a06d7bf90d2724d0d32b9675e29d2 87 SUPERFAMILY SSF47413 9 68 1.2E-16 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_0821 9ef7d2b6b70656981ca7d7b0661a304f 589 Pfam PF00890 FAD binding domain 10 406 1.2E-116 T 10-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0821 9ef7d2b6b70656981ca7d7b0661a304f 589 Gene3D G3DSA:1.20.58.100 432 548 1.6E-39 T 10-10-2018 VF_0821 9ef7d2b6b70656981ca7d7b0661a304f 589 SUPERFAMILY SSF46977 453 589 1.44E-48 T 10-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0821 9ef7d2b6b70656981ca7d7b0661a304f 589 SUPERFAMILY SSF51905 6 445 5.78E-73 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0821 9ef7d2b6b70656981ca7d7b0661a304f 589 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 7 589 8.4E-275 T 10-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0821 9ef7d2b6b70656981ca7d7b0661a304f 589 SUPERFAMILY SSF56425 238 357 2.54E-41 T 10-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0821 9ef7d2b6b70656981ca7d7b0661a304f 589 Pfam PF02910 Fumarate reductase flavoprotein C-term 461 589 1.0E-37 T 10-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0821 9ef7d2b6b70656981ca7d7b0661a304f 589 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 44 53 - T 10-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0821 9ef7d2b6b70656981ca7d7b0661a304f 589 Gene3D G3DSA:3.50.50.60 10 417 2.1E-168 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0821 9ef7d2b6b70656981ca7d7b0661a304f 589 Gene3D G3DSA:4.10.80.40 549 589 4.6E-23 T 10-10-2018 VF_0821 9ef7d2b6b70656981ca7d7b0661a304f 589 Gene3D G3DSA:3.90.700.10 247 351 2.1E-168 T 10-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0821 9ef7d2b6b70656981ca7d7b0661a304f 589 PIRSF PIRSF000171 2 581 1.2E-52 T 10-10-2018 VF_0821 9ef7d2b6b70656981ca7d7b0661a304f 589 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 10 589 7.3E-241 T 10-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2014 3e6d15a1ff5d97242155e772115542ed 588 Pfam PF03237 Terminase-like family 169 379 2.5E-38 T 10-10-2018 IPR004921 Terminase large subunit, T4likevirus-type VF_2014 3e6d15a1ff5d97242155e772115542ed 588 Gene3D G3DSA:3.40.50.300 79 308 2.1E-20 T 10-10-2018 VF_2014 3e6d15a1ff5d97242155e772115542ed 588 Gene3D G3DSA:3.30.420.240 425 568 2.9E-8 T 10-10-2018 VF_2014 3e6d15a1ff5d97242155e772115542ed 588 Pfam PF17289 Terminase RNaseH-like domain 410 571 1.0E-21 T 10-10-2018 IPR035421 Terminase, large subunit gp17-like VF_2014 3e6d15a1ff5d97242155e772115542ed 588 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 22 72 8.7E-8 T 10-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 VF_2104 01287ff2c65608a36814b716cabd9e90 193 PIRSF PIRSF006806 1 190 4.9E-42 T 10-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase VF_2104 01287ff2c65608a36814b716cabd9e90 193 Gene3D G3DSA:3.40.50.10420 1 192 8.7E-58 T 10-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily VF_2104 01287ff2c65608a36814b716cabd9e90 193 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 6 187 4.5E-56 T 10-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase VF_2104 01287ff2c65608a36814b716cabd9e90 193 SUPERFAMILY SSF100950 3 193 5.02E-58 T 10-10-2018 IPR037171 NagB/RpiA transferase-like VF_2104 01287ff2c65608a36814b716cabd9e90 193 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 5 187 9.7E-48 T 10-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase VF_2318 79ec3cf7623aa2ad650016e938c5e865 438 SMART SM00788 4 431 3.3E-299 T 10-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VF_2318 79ec3cf7623aa2ad650016e938c5e865 438 Pfam PF00709 Adenylosuccinate synthetase 5 430 2.5E-177 T 10-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VF_2318 79ec3cf7623aa2ad650016e938c5e865 438 Gene3D G3DSA:3.40.440.10 6 249 1.5E-105 T 10-10-2018 VF_2318 79ec3cf7623aa2ad650016e938c5e865 438 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 10-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VF_2318 79ec3cf7623aa2ad650016e938c5e865 438 SUPERFAMILY SSF52540 3 436 1.7E-177 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2318 79ec3cf7623aa2ad650016e938c5e865 438 Gene3D G3DSA:3.90.170.10 267 438 2.3E-66 T 10-10-2018 VF_2318 79ec3cf7623aa2ad650016e938c5e865 438 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 438 217.115 T 10-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VF_2318 79ec3cf7623aa2ad650016e938c5e865 438 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 10-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VF_2318 79ec3cf7623aa2ad650016e938c5e865 438 Gene3D G3DSA:1.10.300.10 102 201 1.5E-105 T 10-10-2018 VF_2318 79ec3cf7623aa2ad650016e938c5e865 438 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 431 1.4E-189 T 10-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VF_2391 fa8096577d983e942749f0de3bf31b2a 124 PIRSF PIRSF002097 27 124 1.4E-43 T 10-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VF_2391 fa8096577d983e942749f0de3bf31b2a 124 Hamap MF_00166 DNA-binding protein Fis [fis]. 27 124 31.674 T 10-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VF_2391 fa8096577d983e942749f0de3bf31b2a 124 Pfam PF02954 Bacterial regulatory protein, Fis family 81 121 1.3E-14 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_2391 fa8096577d983e942749f0de3bf31b2a 124 Gene3D G3DSA:1.10.10.60 27 124 1.8E-32 T 10-10-2018 VF_2391 fa8096577d983e942749f0de3bf31b2a 124 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 87 104 1.2E-13 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_2391 fa8096577d983e942749f0de3bf31b2a 124 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 104 124 1.2E-13 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_2391 fa8096577d983e942749f0de3bf31b2a 124 PRINTS PR01591 DNA-binding protein FIS signature 35 52 8.6E-31 T 10-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VF_2391 fa8096577d983e942749f0de3bf31b2a 124 PRINTS PR01591 DNA-binding protein FIS signature 83 95 8.6E-31 T 10-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VF_2391 fa8096577d983e942749f0de3bf31b2a 124 PRINTS PR01591 DNA-binding protein FIS signature 68 83 8.6E-31 T 10-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VF_2391 fa8096577d983e942749f0de3bf31b2a 124 PRINTS PR01591 DNA-binding protein FIS signature 52 68 8.6E-31 T 10-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VF_2391 fa8096577d983e942749f0de3bf31b2a 124 SUPERFAMILY SSF46689 33 124 1.83E-24 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1122 99c61bfa596ff3c0261f47a192a25e13 678 Gene3D G3DSA:3.40.50.1820 12 642 2.1E-246 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_1122 99c61bfa596ff3c0261f47a192a25e13 678 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 4 399 8.3E-119 T 10-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 VF_1122 99c61bfa596ff3c0261f47a192a25e13 678 Pfam PF00326 Prolyl oligopeptidase family 458 673 2.0E-70 T 10-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 VF_1122 99c61bfa596ff3c0261f47a192a25e13 678 SUPERFAMILY SSF50993 2 407 2.88E-93 T 10-10-2018 VF_1122 99c61bfa596ff3c0261f47a192a25e13 678 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 504 534 - T 10-10-2018 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 VF_1122 99c61bfa596ff3c0261f47a192a25e13 678 Gene3D G3DSA:2.130.10.120 70 403 2.1E-246 T 10-10-2018 VF_1122 99c61bfa596ff3c0261f47a192a25e13 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 443 461 4.6E-60 T 10-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VF_1122 99c61bfa596ff3c0261f47a192a25e13 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 527 547 4.6E-60 T 10-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VF_1122 99c61bfa596ff3c0261f47a192a25e13 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 497 516 4.6E-60 T 10-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VF_1122 99c61bfa596ff3c0261f47a192a25e13 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 602 624 4.6E-60 T 10-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VF_1122 99c61bfa596ff3c0261f47a192a25e13 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 469 493 4.6E-60 T 10-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VF_1122 99c61bfa596ff3c0261f47a192a25e13 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 583 598 4.6E-60 T 10-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VF_1122 99c61bfa596ff3c0261f47a192a25e13 678 SUPERFAMILY SSF53474 412 665 7.68E-51 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_2342 4c848106220e10031a1880402ad6c087 94 Gene3D G3DSA:1.20.120.1490 1 94 1.6E-25 T 10-10-2018 VF_2342 4c848106220e10031a1880402ad6c087 94 Pfam PF07813 LTXXQ motif family protein 15 84 6.0E-14 T 10-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 VF_2166 135d9be16a234e2ed40ed90c0ad61d7f 475 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 228 290 1.3E-16 T 10-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 VF_2166 135d9be16a234e2ed40ed90c0ad61d7f 475 Pfam PF01743 Poly A polymerase head domain 70 201 1.3E-39 T 10-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 VF_2166 135d9be16a234e2ed40ed90c0ad61d7f 475 SUPERFAMILY SSF81301 41 198 2.94E-41 T 10-10-2018 VF_2166 135d9be16a234e2ed40ed90c0ad61d7f 475 Pfam PF12626 Polymerase A arginine-rich C-terminus 349 466 3.7E-38 T 10-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain VF_2166 135d9be16a234e2ed40ed90c0ad61d7f 475 Gene3D G3DSA:3.30.460.10 36 198 2.2E-64 T 10-10-2018 VF_2166 135d9be16a234e2ed40ed90c0ad61d7f 475 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 31 466 37.31 T 10-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 VF_2166 135d9be16a234e2ed40ed90c0ad61d7f 475 Gene3D G3DSA:1.10.3090.10 199 450 8.0E-94 T 10-10-2018 VF_2166 135d9be16a234e2ed40ed90c0ad61d7f 475 SUPERFAMILY SSF81891 199 437 2.88E-46 T 10-10-2018 VF_2166 135d9be16a234e2ed40ed90c0ad61d7f 475 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 39 473 3.5E-165 T 10-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 VF_1074 d4d454ad9d70b3009a4498e3f8616c1d 273 SUPERFAMILY SSF51215 27 156 4.45E-18 T 10-10-2018 IPR037923 Transcription regulator HTH-like VF_1074 d4d454ad9d70b3009a4498e3f8616c1d 273 Gene3D G3DSA:2.60.120.280 11 165 3.2E-5 T 10-10-2018 VF_1074 d4d454ad9d70b3009a4498e3f8616c1d 273 SUPERFAMILY SSF46689 173 221 3.67E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1074 d4d454ad9d70b3009a4498e3f8616c1d 273 SMART SM00342 188 270 4.6E-26 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_1074 d4d454ad9d70b3009a4498e3f8616c1d 273 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 225 266 - T 10-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VF_1074 d4d454ad9d70b3009a4498e3f8616c1d 273 Pfam PF02311 AraC-like ligand binding domain 32 114 8.6E-15 T 10-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 VF_1074 d4d454ad9d70b3009a4498e3f8616c1d 273 Gene3D G3DSA:1.10.10.60 170 230 4.3E-14 T 10-10-2018 VF_1074 d4d454ad9d70b3009a4498e3f8616c1d 273 Gene3D G3DSA:1.10.10.2730 231 272 2.3E-12 T 10-10-2018 VF_1074 d4d454ad9d70b3009a4498e3f8616c1d 273 SUPERFAMILY SSF46689 224 272 8.24E-11 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1074 d4d454ad9d70b3009a4498e3f8616c1d 273 Pfam PF12833 Helix-turn-helix domain 194 271 6.9E-19 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_1074 d4d454ad9d70b3009a4498e3f8616c1d 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 254 270 4.5E-5 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_1074 d4d454ad9d70b3009a4498e3f8616c1d 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 239 254 4.5E-5 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_1700 16602256674b2df041eff478589a4cc9 403 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 358 4.0E-29 T 10-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal VF_1700 16602256674b2df041eff478589a4cc9 403 SUPERFAMILY SSF53901 1 251 2.88E-64 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_1700 16602256674b2df041eff478589a4cc9 403 SMART SM00825 Beta-ketoacyl synthase 4 403 3.8E-14 T 10-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain VF_1700 16602256674b2df041eff478589a4cc9 403 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 10-10-2018 IPR018201 Beta-ketoacyl synthase, active site VF_1700 16602256674b2df041eff478589a4cc9 403 SUPERFAMILY SSF53901 213 401 1.54E-63 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_1700 16602256674b2df041eff478589a4cc9 403 Gene3D G3DSA:3.40.47.10 258 401 7.2E-52 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_1700 16602256674b2df041eff478589a4cc9 403 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 244 2.2E-43 T 10-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal VF_1700 16602256674b2df041eff478589a4cc9 403 Gene3D G3DSA:3.40.47.10 6 257 1.7E-66 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0636 efa5f75461b05a5377dffe6822a9b6a3 449 Pfam PF02601 Exonuclease VII, large subunit 126 440 2.8E-104 T 10-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 VF_0636 efa5f75461b05a5377dffe6822a9b6a3 449 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 7 443 31.07 T 10-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 VF_0636 efa5f75461b05a5377dffe6822a9b6a3 449 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 11 357 7.3E-138 T 10-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 VF_0636 efa5f75461b05a5377dffe6822a9b6a3 449 Pfam PF13742 OB-fold nucleic acid binding domain 10 103 5.4E-30 T 10-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 VF_1865 86c9e0d698826a8c77e286b7be369b98 377 Pfam PF00700 Bacterial flagellin C-terminal helical region 292 376 1.5E-24 T 10-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VF_1865 86c9e0d698826a8c77e286b7be369b98 377 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 9.0E-44 T 10-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VF_1865 86c9e0d698826a8c77e286b7be369b98 377 Gene3D G3DSA:2.30.220.10 192 211 3.5E-77 T 10-10-2018 VF_1865 86c9e0d698826a8c77e286b7be369b98 377 Gene3D G3DSA:1.10.8.410 325 376 1.9E-18 T 10-10-2018 VF_1865 86c9e0d698826a8c77e286b7be369b98 377 Pfam PF07196 Flagellin hook IN motif 196 248 8.0E-12 T 10-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VF_1865 86c9e0d698826a8c77e286b7be369b98 377 PRINTS PR00207 Flagellin signature 76 95 9.0E-27 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1865 86c9e0d698826a8c77e286b7be369b98 377 PRINTS PR00207 Flagellin signature 111 134 9.0E-27 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1865 86c9e0d698826a8c77e286b7be369b98 377 PRINTS PR00207 Flagellin signature 37 54 9.0E-27 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1865 86c9e0d698826a8c77e286b7be369b98 377 Gene3D G3DSA:1.20.1330.10 45 177 3.5E-77 T 10-10-2018 VF_1865 86c9e0d698826a8c77e286b7be369b98 377 Gene3D G3DSA:1.20.58.1830 5 33 3.5E-77 T 10-10-2018 VF_1865 86c9e0d698826a8c77e286b7be369b98 377 SUPERFAMILY SSF64518 1 376 4.32E-99 T 10-10-2018 VF_1865 86c9e0d698826a8c77e286b7be369b98 377 Gene3D G3DSA:2.170.280.10 178 191 3.5E-77 T 10-10-2018 VF_0384 3269fc2b4be8746da509634b7f0b4e53 284 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 283 40.416 T 10-10-2018 IPR005337 RapZ-like family GO:0005524 VF_0384 3269fc2b4be8746da509634b7f0b4e53 284 PIRSF PIRSF005052 1 284 6.0E-110 T 10-10-2018 IPR005337 RapZ-like family GO:0005524 VF_0384 3269fc2b4be8746da509634b7f0b4e53 284 Gene3D G3DSA:3.40.50.300 1 167 2.7E-8 T 10-10-2018 VF_0384 3269fc2b4be8746da509634b7f0b4e53 284 Pfam PF03668 P-loop ATPase protein family 1 283 9.7E-119 T 10-10-2018 IPR005337 RapZ-like family GO:0005524 VF_0384 3269fc2b4be8746da509634b7f0b4e53 284 SUPERFAMILY SSF52540 1 154 1.32E-11 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2393 5e3905c8b41146be2b54aaf805c8e72c 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 2.4E-11 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_2393 5e3905c8b41146be2b54aaf805c8e72c 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 2.4E-11 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_2393 5e3905c8b41146be2b54aaf805c8e72c 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 2.4E-11 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_2393 5e3905c8b41146be2b54aaf805c8e72c 139 Gene3D G3DSA:1.10.1660.10 1 130 6.0E-35 T 10-10-2018 VF_2393 5e3905c8b41146be2b54aaf805c8e72c 139 TIGRFAM TIGR02043 ZntR: Zn(II)-responsive transcriptional regulator 1 131 4.0E-61 T 10-10-2018 IPR011788 Zn(II)-responsive transcriptional regulator GO:0003677|GO:0006351|GO:0008270 VF_2393 5e3905c8b41146be2b54aaf805c8e72c 139 ProSitePatterns PS00552 MerR-type HTH domain signature. 5 27 - T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_2393 5e3905c8b41146be2b54aaf805c8e72c 139 SUPERFAMILY SSF46955 2 121 5.86E-33 T 10-10-2018 IPR009061 Putative DNA-binding domain superfamily VF_2393 5e3905c8b41146be2b54aaf805c8e72c 139 SMART SM00422 2 71 3.1E-30 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_2393 5e3905c8b41146be2b54aaf805c8e72c 139 Pfam PF13411 MerR HTH family regulatory protein 2 68 1.1E-18 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_A0753 94bfa391b2cb7750d4f291e60d59f842 479 PRINTS PR00147 DNA photolyase signature 348 366 7.2E-28 T 10-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 VF_A0753 94bfa391b2cb7750d4f291e60d59f842 479 PRINTS PR00147 DNA photolyase signature 146 162 7.2E-28 T 10-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 VF_A0753 94bfa391b2cb7750d4f291e60d59f842 479 PRINTS PR00147 DNA photolyase signature 387 401 7.2E-28 T 10-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 VF_A0753 94bfa391b2cb7750d4f291e60d59f842 479 PRINTS PR00147 DNA photolyase signature 328 344 7.2E-28 T 10-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 VF_A0753 94bfa391b2cb7750d4f291e60d59f842 479 Pfam PF03441 FAD binding domain of DNA photolyase 278 471 1.9E-80 T 10-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 VF_A0753 94bfa391b2cb7750d4f291e60d59f842 479 Pfam PF00875 DNA photolyase 10 170 8.3E-42 T 10-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 VF_A0753 94bfa391b2cb7750d4f291e60d59f842 479 SUPERFAMILY SSF48173 203 476 3.14E-103 T 10-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 VF_A0753 94bfa391b2cb7750d4f291e60d59f842 479 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 348 367 - T 10-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal VF_A0753 94bfa391b2cb7750d4f291e60d59f842 479 SUPERFAMILY SSF52425 4 174 6.15E-44 T 10-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 VF_A0753 94bfa391b2cb7750d4f291e60d59f842 479 Gene3D G3DSA:1.10.579.10 296 476 2.8E-76 T 10-10-2018 VF_A0753 94bfa391b2cb7750d4f291e60d59f842 479 Gene3D G3DSA:3.40.50.620 10 208 1.6E-68 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_A0753 94bfa391b2cb7750d4f291e60d59f842 479 Gene3D G3DSA:1.25.40.80 137 288 1.6E-68 T 10-10-2018 VF_2291 7c1ea1056e08c43d4fffd1b272a87dd9 362 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 14 353 3.6E-120 T 10-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 VF_2291 7c1ea1056e08c43d4fffd1b272a87dd9 362 Gene3D G3DSA:3.40.50.1970 1 173 1.9E-63 T 10-10-2018 VF_2291 7c1ea1056e08c43d4fffd1b272a87dd9 362 Gene3D G3DSA:1.20.1090.10 174 362 1.4E-69 T 10-10-2018 VF_2291 7c1ea1056e08c43d4fffd1b272a87dd9 362 PIRSF PIRSF001455 4 361 2.8E-108 T 10-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 VF_2291 7c1ea1056e08c43d4fffd1b272a87dd9 362 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 361 71.753 T 10-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 VF_2291 7c1ea1056e08c43d4fffd1b272a87dd9 362 SUPERFAMILY SSF56796 3 358 4.71E-116 T 10-10-2018 VF_2291 7c1ea1056e08c43d4fffd1b272a87dd9 362 Pfam PF01761 3-dehydroquinate synthase 69 326 3.6E-112 T 10-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 VF_1939 99758011028227fdea932fdd9bd7cc27 517 SMART SM00257 334 377 4.3E-11 T 10-10-2018 IPR018392 LysM domain VF_1939 99758011028227fdea932fdd9bd7cc27 517 SMART SM00257 465 509 3.0E-9 T 10-10-2018 IPR018392 LysM domain VF_1939 99758011028227fdea932fdd9bd7cc27 517 SMART SM00257 408 452 3.6E-11 T 10-10-2018 IPR018392 LysM domain VF_1939 99758011028227fdea932fdd9bd7cc27 517 SUPERFAMILY SSF54106 407 452 1.44E-10 T 10-10-2018 VF_1939 99758011028227fdea932fdd9bd7cc27 517 SUPERFAMILY SSF53955 103 262 1.82E-37 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_1939 99758011028227fdea932fdd9bd7cc27 517 Gene3D G3DSA:3.10.350.10 462 512 2.5E-15 T 10-10-2018 IPR036779 LysM domain superfamily VF_1939 99758011028227fdea932fdd9bd7cc27 517 SUPERFAMILY SSF54106 464 510 1.7E-10 T 10-10-2018 VF_1939 99758011028227fdea932fdd9bd7cc27 517 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 124 152 - T 10-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 VF_1939 99758011028227fdea932fdd9bd7cc27 517 Pfam PF01476 LysM domain 466 508 3.9E-12 T 10-10-2018 IPR018392 LysM domain VF_1939 99758011028227fdea932fdd9bd7cc27 517 Pfam PF01476 LysM domain 409 451 1.0E-11 T 10-10-2018 IPR018392 LysM domain VF_1939 99758011028227fdea932fdd9bd7cc27 517 Pfam PF01476 LysM domain 335 377 2.9E-9 T 10-10-2018 IPR018392 LysM domain VF_1939 99758011028227fdea932fdd9bd7cc27 517 SUPERFAMILY SSF54106 333 377 8.89E-10 T 10-10-2018 VF_1939 99758011028227fdea932fdd9bd7cc27 517 Gene3D G3DSA:1.10.530.10 100 252 2.0E-26 T 10-10-2018 VF_1939 99758011028227fdea932fdd9bd7cc27 517 Gene3D G3DSA:3.10.350.10 320 387 3.4E-12 T 10-10-2018 IPR036779 LysM domain superfamily VF_1939 99758011028227fdea932fdd9bd7cc27 517 Gene3D G3DSA:3.10.350.10 394 460 4.3E-14 T 10-10-2018 IPR036779 LysM domain superfamily VF_1939 99758011028227fdea932fdd9bd7cc27 517 Pfam PF01464 Transglycosylase SLT domain 115 217 2.7E-20 T 10-10-2018 IPR008258 Transglycosylase SLT domain 1 VF_2162 c54302a5c8bf71f7c055228ab2806c8c 790 Pfam PF14814 Bifunctional transglycosylase second domain 92 174 1.8E-23 T 10-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2162 c54302a5c8bf71f7c055228ab2806c8c 790 SUPERFAMILY SSF53955 185 381 5.62E-69 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_2162 c54302a5c8bf71f7c055228ab2806c8c 790 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 192 725 5.0E-155 T 10-10-2018 VF_2162 c54302a5c8bf71f7c055228ab2806c8c 790 Pfam PF00912 Transglycosylase 188 359 1.7E-60 T 10-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2162 c54302a5c8bf71f7c055228ab2806c8c 790 Gene3D G3DSA:3.30.2060.10 90 179 4.9E-255 T 10-10-2018 VF_2162 c54302a5c8bf71f7c055228ab2806c8c 790 Gene3D G3DSA:3.40.710.10 82 739 4.9E-255 T 10-10-2018 VF_2162 c54302a5c8bf71f7c055228ab2806c8c 790 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 47 770 0.0 T 10-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2162 c54302a5c8bf71f7c055228ab2806c8c 790 Pfam PF00905 Penicillin binding protein transpeptidase domain 451 679 2.4E-24 T 10-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 VF_2162 c54302a5c8bf71f7c055228ab2806c8c 790 SUPERFAMILY SSF56601 341 773 9.01E-110 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VF_2162 c54302a5c8bf71f7c055228ab2806c8c 790 PIRSF PIRSF002799 11 789 0.0 T 10-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2162 c54302a5c8bf71f7c055228ab2806c8c 790 Gene3D G3DSA:1.10.3810.10 180 383 4.9E-255 T 10-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_A0391 8af0decae862814023dcbd4091feb651 269 SMART SM00062 39 261 5.5E-42 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_A0391 8af0decae862814023dcbd4091feb651 269 SUPERFAMILY SSF53850 1 259 9.66E-57 T 10-10-2018 VF_A0391 8af0decae862814023dcbd4091feb651 269 Gene3D G3DSA:3.40.190.10 125 215 6.1E-57 T 10-10-2018 VF_A0391 8af0decae862814023dcbd4091feb651 269 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 259 1.2E-44 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_A0391 8af0decae862814023dcbd4091feb651 269 Gene3D G3DSA:3.40.190.10 31 248 6.1E-57 T 10-10-2018 VF_A0200 29b570d17d7cf821952d44729bdd1024 288 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0200 29b570d17d7cf821952d44729bdd1024 288 Gene3D G3DSA:3.40.50.300 13 286 2.7E-83 T 10-10-2018 VF_A0200 29b570d17d7cf821952d44729bdd1024 288 Pfam PF00005 ABC transporter 36 191 1.4E-27 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0200 29b570d17d7cf821952d44729bdd1024 288 SMART SM00382 44 249 2.2E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0200 29b570d17d7cf821952d44729bdd1024 288 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 274 9.0E-7 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_A0200 29b570d17d7cf821952d44729bdd1024 288 SUPERFAMILY SSF52540 15 263 1.94E-66 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 199 220 - T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 PIRSF PIRSF000114 9 343 1.8E-96 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 209 233 4.9E-43 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 184 208 4.9E-43 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 249 266 4.9E-43 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 17 34 4.9E-43 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 143 163 4.9E-43 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 67 94 4.9E-43 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 SUPERFAMILY SSF48179 190 342 1.01E-55 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 15 170 4.8E-46 T 10-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 Gene3D G3DSA:1.10.1040.10 200 343 4.2E-53 T 10-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 13 333 36.924 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 Gene3D G3DSA:3.40.50.720 4 198 1.3E-50 T 10-10-2018 VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 SUPERFAMILY SSF51735 14 189 2.79E-49 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_2348 b697a1b667cbcc4d8219bed1e7792821 343 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 191 329 2.2E-51 T 10-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VF_0891 8ff29abf97020877a7bf015b6962e68a 285 Gene3D G3DSA:3.40.50.10490 94 276 4.6E-41 T 10-10-2018 VF_0891 8ff29abf97020877a7bf015b6962e68a 285 Pfam PF01380 SIS domain 124 252 1.5E-26 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VF_0891 8ff29abf97020877a7bf015b6962e68a 285 SUPERFAMILY SSF53697 93 277 3.26E-41 T 10-10-2018 VF_0891 8ff29abf97020877a7bf015b6962e68a 285 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 5.2E-29 T 10-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 VF_0891 8ff29abf97020877a7bf015b6962e68a 285 Gene3D G3DSA:1.10.10.10 1 79 5.0E-27 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0891 8ff29abf97020877a7bf015b6962e68a 285 SUPERFAMILY SSF46689 1 80 8.06E-22 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0305 1efe1f4c6cc27d75423edbd4e527db93 274 Gene3D G3DSA:3.40.50.300 1 273 6.2E-68 T 10-10-2018 VF_A0305 1efe1f4c6cc27d75423edbd4e527db93 274 Pfam PF00005 ABC transporter 30 178 4.0E-30 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0305 1efe1f4c6cc27d75423edbd4e527db93 274 SUPERFAMILY SSF52540 5 252 1.36E-56 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0305 1efe1f4c6cc27d75423edbd4e527db93 274 SMART SM00382 38 227 5.9E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2592 fc5497b2e5d93f9d7b3654e50931ff2b 83 Hamap MF_00404 Probable oxaloacetate decarboxylase gamma chain [oadG]. 1 83 32.057 T 10-10-2018 IPR023424 Oxaloacetate decarboxylase gamma chain, probable GO:0008948 KEGG: 00620+4.1.1.3 VF_2592 fc5497b2e5d93f9d7b3654e50931ff2b 83 Pfam PF04277 Oxaloacetate decarboxylase, gamma chain 10 79 1.4E-17 T 10-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 VF_2592 fc5497b2e5d93f9d7b3654e50931ff2b 83 TIGRFAM TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit 6 82 1.8E-16 T 10-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 VF_A0018 dad9a0b48fa8091d0d1e684b6ce9cdf0 353 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 30 317 31.873 T 10-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 VF_A0018 dad9a0b48fa8091d0d1e684b6ce9cdf0 353 Pfam PF03193 RsgA GTPase 79 253 8.1E-50 T 10-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 VF_A0018 dad9a0b48fa8091d0d1e684b6ce9cdf0 353 Gene3D G3DSA:3.40.50.300 83 253 6.3E-45 T 10-10-2018 VF_A0018 dad9a0b48fa8091d0d1e684b6ce9cdf0 353 Gene3D G3DSA:1.10.40.50 256 325 1.4E-20 T 10-10-2018 VF_A0018 dad9a0b48fa8091d0d1e684b6ce9cdf0 353 SUPERFAMILY SSF52540 98 314 3.59E-51 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0018 dad9a0b48fa8091d0d1e684b6ce9cdf0 353 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 63 310 2.9E-50 T 10-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 VF_2244 b57597cd241a2d0cbb80309e145b7c76 407 Pfam PF01743 Poly A polymerase head domain 3 122 1.8E-17 T 10-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 VF_2244 b57597cd241a2d0cbb80309e145b7c76 407 SUPERFAMILY SSF81301 2 118 6.98E-29 T 10-10-2018 VF_2244 b57597cd241a2d0cbb80309e145b7c76 407 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 5.8E-14 T 10-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 VF_2244 b57597cd241a2d0cbb80309e145b7c76 407 Gene3D G3DSA:1.10.3090.10 122 406 4.3E-47 T 10-10-2018 VF_2244 b57597cd241a2d0cbb80309e145b7c76 407 PIRSF PIRSF000813 1 407 1.2E-198 T 10-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 VF_2244 b57597cd241a2d0cbb80309e145b7c76 407 SUPERFAMILY SSF81891 120 404 9.81E-56 T 10-10-2018 VF_2244 b57597cd241a2d0cbb80309e145b7c76 407 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 51.79 T 10-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 VF_2244 b57597cd241a2d0cbb80309e145b7c76 407 Pfam PF01966 HD domain 229 327 8.6E-10 T 10-10-2018 IPR006674 HD domain VF_2244 b57597cd241a2d0cbb80309e145b7c76 407 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 43.31 T 10-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 VF_2244 b57597cd241a2d0cbb80309e145b7c76 407 Gene3D G3DSA:3.30.460.10 1 121 5.9E-27 T 10-10-2018 VF_0634 b13fd4aeeafacb94b22e07df67daa47b 291 Gene3D G3DSA:3.30.980.10 122 283 3.0E-8 T 10-10-2018 VF_0634 b13fd4aeeafacb94b22e07df67daa47b 291 SUPERFAMILY SSF55186 122 277 1.05E-14 T 10-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 VF_A0665 31a98936e2599f4bc390016c3c70d8bd 274 SUPERFAMILY SSF109604 4 247 7.54E-58 T 10-10-2018 VF_A0665 31a98936e2599f4bc390016c3c70d8bd 274 Pfam PF08668 HDOD domain 13 204 6.2E-55 T 10-10-2018 IPR013976 Metal-dependent hydrolase HDOD VF_A0665 31a98936e2599f4bc390016c3c70d8bd 274 Gene3D G3DSA:1.10.3210.10 1 274 2.4E-67 T 10-10-2018 VF_0558 71b03b609af73954aa02e2bfc5999c48 644 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 500 528 - T 10-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 VF_0558 71b03b609af73954aa02e2bfc5999c48 644 Pfam PF14718 Soluble lytic murein transglycosylase L domain 407 471 1.0E-21 T 10-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 VF_0558 71b03b609af73954aa02e2bfc5999c48 644 SUPERFAMILY SSF53955 479 636 2.31E-46 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_0558 71b03b609af73954aa02e2bfc5999c48 644 Pfam PF01464 Transglycosylase SLT domain 484 596 6.6E-25 T 10-10-2018 IPR008258 Transglycosylase SLT domain 1 VF_0558 71b03b609af73954aa02e2bfc5999c48 644 Gene3D G3DSA:1.10.530.10 473 644 1.1E-47 T 10-10-2018 VF_0558 71b03b609af73954aa02e2bfc5999c48 644 Gene3D G3DSA:1.10.1240.20 405 471 5.2E-23 T 10-10-2018 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily GO:0004553|GO:0042597 VF_0558 71b03b609af73954aa02e2bfc5999c48 644 SUPERFAMILY SSF48435 28 476 3.14E-123 T 10-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 VF_0558 71b03b609af73954aa02e2bfc5999c48 644 Gene3D G3DSA:1.25.20.10 28 387 1.7E-96 T 10-10-2018 VF_A1004 ce004821933101a8494acf9403c8492e 389 TIGRFAM TIGR02815 agaS_fam: putative sugar isomerase, AgaS family 17 385 1.1E-175 T 10-10-2018 IPR014180 Sugar isomerase, AgaS GO:0016853 VF_A1004 ce004821933101a8494acf9403c8492e 389 Pfam PF01380 SIS domain 229 338 2.9E-13 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VF_A1004 ce004821933101a8494acf9403c8492e 389 Pfam PF01380 SIS domain 56 187 3.2E-14 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VF_A1004 ce004821933101a8494acf9403c8492e 389 Gene3D G3DSA:3.40.50.10490 203 379 2.8E-67 T 10-10-2018 VF_A1004 ce004821933101a8494acf9403c8492e 389 SUPERFAMILY SSF53697 19 376 7.51E-54 T 10-10-2018 VF_A1004 ce004821933101a8494acf9403c8492e 389 Gene3D G3DSA:3.40.50.10490 4 202 8.2E-59 T 10-10-2018 VF_A0155 3df222d0e480fb77c9c3204f4e66a36d 482 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 318 479 1.4E-49 T 10-10-2018 IPR000160 GGDEF domain VF_A0155 3df222d0e480fb77c9c3204f4e66a36d 482 Pfam PF00990 Diguanylate cyclase, GGDEF domain 320 476 2.4E-44 T 10-10-2018 IPR000160 GGDEF domain VF_A0155 3df222d0e480fb77c9c3204f4e66a36d 482 Gene3D G3DSA:3.30.450.20 27 177 1.6E-10 T 10-10-2018 VF_A0155 3df222d0e480fb77c9c3204f4e66a36d 482 SMART SM00267 309 481 2.9E-54 T 10-10-2018 IPR000160 GGDEF domain VF_A0155 3df222d0e480fb77c9c3204f4e66a36d 482 SUPERFAMILY SSF55073 325 480 1.96E-47 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0155 3df222d0e480fb77c9c3204f4e66a36d 482 Gene3D G3DSA:3.30.70.270 314 481 1.8E-53 T 10-10-2018 VF_A0650 6e609b3887f9e860588aab338c046ef8 84 SUPERFAMILY SSF143120 1 74 1.92E-15 T 10-10-2018 IPR036165 YefM-like superfamily VF_A0650 6e609b3887f9e860588aab338c046ef8 84 Gene3D G3DSA:3.40.1620.10 1 40 2.9E-5 T 10-10-2018 VF_A0650 6e609b3887f9e860588aab338c046ef8 84 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 5 56 3.2E-10 T 10-10-2018 VF_A0650 6e609b3887f9e860588aab338c046ef8 84 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 65 4.8E-13 T 10-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM VF_A0522 8cf2cf2dbf26d63c17a5a56a982b5670 157 Pfam PF04002 RadC-like JAB domain 37 156 5.5E-44 T 10-10-2018 IPR025657 RadC-like JAB domain VF_A0522 8cf2cf2dbf26d63c17a5a56a982b5670 157 SUPERFAMILY SSF102712 52 127 9.81E-6 T 10-10-2018 VF_A0522 8cf2cf2dbf26d63c17a5a56a982b5670 157 TIGRFAM TIGR00608 radc: DNA repair protein RadC 24 157 7.0E-44 T 10-10-2018 IPR001405 Uncharacterised protein family UPF0758 VF_A0522 8cf2cf2dbf26d63c17a5a56a982b5670 157 Gene3D G3DSA:3.40.140.10 36 157 2.5E-42 T 10-10-2018 VF_A0522 8cf2cf2dbf26d63c17a5a56a982b5670 157 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 107 112 - T 10-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site VF_A0787 97b25022a1f0034aa4cf504f431c3792 523 SUPERFAMILY SSF52540 288 520 9.84E-45 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0787 97b25022a1f0034aa4cf504f431c3792 523 Pfam PF12848 ABC transporter 216 301 2.7E-22 T 10-10-2018 IPR032781 ABC-transporter extension domain VF_A0787 97b25022a1f0034aa4cf504f431c3792 523 Pfam PF00005 ABC transporter 328 459 3.7E-20 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0787 97b25022a1f0034aa4cf504f431c3792 523 SMART SM00382 18 220 3.7E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0787 97b25022a1f0034aa4cf504f431c3792 523 SMART SM00382 336 504 3.0E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0787 97b25022a1f0034aa4cf504f431c3792 523 Gene3D G3DSA:3.40.50.300 274 522 5.7E-50 T 10-10-2018 VF_A0787 97b25022a1f0034aa4cf504f431c3792 523 Gene3D G3DSA:3.40.50.300 2 273 1.2E-56 T 10-10-2018 VF_A0787 97b25022a1f0034aa4cf504f431c3792 523 Pfam PF00005 ABC transporter 10 176 6.2E-20 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0787 97b25022a1f0034aa4cf504f431c3792 523 SUPERFAMILY SSF52540 2 229 1.31E-41 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0836 6fce02ff26ce2f038585be39e5191614 721 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 406 706 4.0E-132 T 10-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 VF_0836 6fce02ff26ce2f038585be39e5191614 721 Gene3D G3DSA:3.40.50.10950 398 709 3.9E-134 T 10-10-2018 VF_0836 6fce02ff26ce2f038585be39e5191614 721 Pfam PF13500 AAA domain 3 229 1.1E-48 T 10-10-2018 VF_0836 6fce02ff26ce2f038585be39e5191614 721 Pfam PF01515 Phosphate acetyl/butaryl transferase 391 706 1.3E-125 T 10-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 VF_0836 6fce02ff26ce2f038585be39e5191614 721 Gene3D G3DSA:3.40.1390.20 225 365 7.1E-15 T 10-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily VF_0836 6fce02ff26ce2f038585be39e5191614 721 SUPERFAMILY SSF75138 229 353 6.54E-26 T 10-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily VF_0836 6fce02ff26ce2f038585be39e5191614 721 SUPERFAMILY SSF52540 1 240 1.62E-26 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0836 6fce02ff26ce2f038585be39e5191614 721 Pfam PF07085 DRTGG domain 233 344 9.4E-29 T 10-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 VF_0836 6fce02ff26ce2f038585be39e5191614 721 PIRSF PIRSF006107 1 714 0.0 T 10-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 VF_0836 6fce02ff26ce2f038585be39e5191614 721 SUPERFAMILY SSF53659 392 709 1.11E-95 T 10-10-2018 VF_0836 6fce02ff26ce2f038585be39e5191614 721 Gene3D G3DSA:3.40.50.10750 529 682 3.9E-134 T 10-10-2018 VF_1234 175ff0d034052747ef3419eaa0704999 732 Pfam PF00593 TonB dependent receptor 255 731 1.8E-56 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VF_1234 175ff0d034052747ef3419eaa0704999 732 Pfam PF07715 TonB-dependent Receptor Plug Domain 47 157 1.7E-26 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain VF_1234 175ff0d034052747ef3419eaa0704999 732 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 33 732 7.1E-117 T 10-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 VF_1234 175ff0d034052747ef3419eaa0704999 732 Gene3D G3DSA:2.170.130.10 33 162 1.2E-34 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VF_1234 175ff0d034052747ef3419eaa0704999 732 SUPERFAMILY SSF56935 34 732 7.69E-114 T 10-10-2018 VF_1234 175ff0d034052747ef3419eaa0704999 732 Gene3D G3DSA:2.40.170.20 177 732 4.6E-115 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VF_1234 175ff0d034052747ef3419eaa0704999 732 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 34 732 2.4E-135 T 10-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 VF_2100 79220d782830aa5a7d748dc7fc48767e 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 6.2E-21 T 10-10-2018 VF_2100 79220d782830aa5a7d748dc7fc48767e 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 6.2E-21 T 10-10-2018 VF_2100 79220d782830aa5a7d748dc7fc48767e 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 6.2E-21 T 10-10-2018 VF_2100 79220d782830aa5a7d748dc7fc48767e 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 6.2E-21 T 10-10-2018 VF_2100 79220d782830aa5a7d748dc7fc48767e 402 SUPERFAMILY SSF51905 5 383 4.17E-58 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2100 79220d782830aa5a7d748dc7fc48767e 402 Gene3D G3DSA:3.50.50.60 6 339 8.3E-119 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2100 79220d782830aa5a7d748dc7fc48767e 402 Pfam PF01494 FAD binding domain 5 346 1.0E-29 T 10-10-2018 IPR002938 FAD-binding domain GO:0071949 VF_2100 79220d782830aa5a7d748dc7fc48767e 402 Gene3D G3DSA:3.30.9.50 80 270 8.3E-119 T 10-10-2018 VF_2100 79220d782830aa5a7d748dc7fc48767e 402 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 295 308 - T 10-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 VF_2100 79220d782830aa5a7d748dc7fc48767e 402 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 391 3.5E-132 T 10-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 VF_2470 214c7d6dd7d7ef8cf62eb3731e72a12c 198 PRINTS PR00885 Bacterial general secretion pathway protein H signature 19 33 9.7E-21 T 10-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VF_2470 214c7d6dd7d7ef8cf62eb3731e72a12c 198 PRINTS PR00885 Bacterial general secretion pathway protein H signature 145 160 9.7E-21 T 10-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VF_2470 214c7d6dd7d7ef8cf62eb3731e72a12c 198 PRINTS PR00885 Bacterial general secretion pathway protein H signature 4 18 9.7E-21 T 10-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VF_2470 214c7d6dd7d7ef8cf62eb3731e72a12c 198 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 29 4.6E-4 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2470 214c7d6dd7d7ef8cf62eb3731e72a12c 198 Gene3D G3DSA:3.55.40.10 35 198 2.5E-49 T 10-10-2018 VF_2470 214c7d6dd7d7ef8cf62eb3731e72a12c 198 Pfam PF12019 Type II transport protein GspH 43 184 3.0E-6 T 10-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 VF_2470 214c7d6dd7d7ef8cf62eb3731e72a12c 198 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 28 6.6E-5 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2470 214c7d6dd7d7ef8cf62eb3731e72a12c 198 SUPERFAMILY SSF54523 9 104 2.98E-10 T 10-10-2018 VF_2470 214c7d6dd7d7ef8cf62eb3731e72a12c 198 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 4 167 2.6E-15 T 10-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VF_1722 7b2b863fb1c63a2b8ee23c4dce78cd92 303 SUPERFAMILY SSF46785 1 112 4.35E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1722 7b2b863fb1c63a2b8ee23c4dce78cd92 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.5E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1722 7b2b863fb1c63a2b8ee23c4dce78cd92 303 SUPERFAMILY SSF53850 89 297 2.17E-37 T 10-10-2018 VF_1722 7b2b863fb1c63a2b8ee23c4dce78cd92 303 Gene3D G3DSA:3.40.190.10 163 267 6.4E-72 T 10-10-2018 VF_1722 7b2b863fb1c63a2b8ee23c4dce78cd92 303 Gene3D G3DSA:3.40.190.10 92 289 6.4E-72 T 10-10-2018 VF_1722 7b2b863fb1c63a2b8ee23c4dce78cd92 303 Pfam PF03466 LysR substrate binding domain 88 292 1.4E-38 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1722 7b2b863fb1c63a2b8ee23c4dce78cd92 303 Gene3D G3DSA:1.10.10.10 1 91 1.1E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1722 7b2b863fb1c63a2b8ee23c4dce78cd92 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 8.1E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1722 7b2b863fb1c63a2b8ee23c4dce78cd92 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 8.1E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1722 7b2b863fb1c63a2b8ee23c4dce78cd92 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 8.1E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1088 9350e7a0d2251c2eb07d0cc9bd251e90 437 PIRSF PIRSF004539 1 437 8.7E-183 T 10-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VF_1088 9350e7a0d2251c2eb07d0cc9bd251e90 437 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 437 6.0E-183 T 10-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VF_1088 9350e7a0d2251c2eb07d0cc9bd251e90 437 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 369 2.8E-154 T 10-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VF_1676 db30240bc136739c4140568b59895e3d 187 Gene3D G3DSA:1.10.357.10 6 171 7.2E-24 T 10-10-2018 VF_1676 db30240bc136739c4140568b59895e3d 187 SUPERFAMILY SSF48498 84 160 6.0E-6 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VF_1676 db30240bc136739c4140568b59895e3d 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 39 68 2.3E-6 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_1676 db30240bc136739c4140568b59895e3d 187 SUPERFAMILY SSF46689 20 78 1.8E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1188 694ded44ff9bf6d86f97638a7a1018b2 381 Gene3D G3DSA:3.40.50.1970 2 182 1.4E-57 T 10-10-2018 VF_1188 694ded44ff9bf6d86f97638a7a1018b2 381 Pfam PF00465 Iron-containing alcohol dehydrogenase 7 373 4.3E-129 T 10-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 VF_1188 694ded44ff9bf6d86f97638a7a1018b2 381 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 171 199 - T 10-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VF_1188 694ded44ff9bf6d86f97638a7a1018b2 381 SUPERFAMILY SSF56796 3 380 3.79E-138 T 10-10-2018 VF_1188 694ded44ff9bf6d86f97638a7a1018b2 381 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 258 278 - T 10-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VF_1188 694ded44ff9bf6d86f97638a7a1018b2 381 Gene3D G3DSA:1.20.1090.10 183 381 8.1E-79 T 10-10-2018 VF_1201 043b8282e1f839d23102c7b060c67f55 377 Gene3D G3DSA:1.10.620.20 2 341 1.8E-144 T 10-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 VF_1201 043b8282e1f839d23102c7b060c67f55 377 SUPERFAMILY SSF47240 3 341 3.72E-111 T 10-10-2018 IPR009078 Ferritin-like superfamily VF_1201 043b8282e1f839d23102c7b060c67f55 377 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 10-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VF_1201 043b8282e1f839d23102c7b060c67f55 377 Pfam PF00268 Ribonucleotide reductase, small chain 33 333 6.1E-48 T 10-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VF_2439 a028448bd55a344d82e765878a63c4ca 492 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 28 492 64.532 T 10-10-2018 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 VF_2439 a028448bd55a344d82e765878a63c4ca 492 Gene3D G3DSA:3.50.50.60 184 302 5.3E-92 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2439 a028448bd55a344d82e765878a63c4ca 492 Gene3D G3DSA:3.30.390.30 371 490 2.4E-32 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VF_2439 a028448bd55a344d82e765878a63c4ca 492 SUPERFAMILY SSF51905 31 345 1.12E-54 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2439 a028448bd55a344d82e765878a63c4ca 492 Gene3D G3DSA:3.50.50.60 33 359 5.3E-92 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2439 a028448bd55a344d82e765878a63c4ca 492 SUPERFAMILY SSF55424 370 489 1.13E-30 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VF_2439 a028448bd55a344d82e765878a63c4ca 492 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 34 352 5.1E-61 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VF_2439 a028448bd55a344d82e765878a63c4ca 492 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 372 483 1.0E-29 T 10-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 35 54 6.8E-28 T 10-10-2018 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 204 222 6.8E-28 T 10-10-2018 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 317 339 6.8E-28 T 10-10-2018 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 165 183 6.8E-28 T 10-10-2018 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 288 304 6.8E-28 T 10-10-2018 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PIRSF PIRSF000350 17 489 5.6E-71 T 10-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 368 389 1.1E-50 T 10-10-2018 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 34 56 1.1E-50 T 10-10-2018 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 433 448 1.1E-50 T 10-10-2018 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 458 478 1.1E-50 T 10-10-2018 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 289 303 1.1E-50 T 10-10-2018 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 67 82 1.1E-50 T 10-10-2018 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 332 339 1.1E-50 T 10-10-2018 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 177 1.1E-50 T 10-10-2018 VF_2439 a028448bd55a344d82e765878a63c4ca 492 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 204 229 1.1E-50 T 10-10-2018 VF_1762 7e27067fd09379a9b66fea29af3c9b13 239 Gene3D G3DSA:3.40.630.70 65 238 5.4E-62 T 10-10-2018 VF_1762 7e27067fd09379a9b66fea29af3c9b13 239 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 239 88.024 T 10-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 VF_1762 7e27067fd09379a9b66fea29af3c9b13 239 Gene3D G3DSA:2.30.210.20 7 64 4.7E-25 T 10-10-2018 VF_1762 7e27067fd09379a9b66fea29af3c9b13 239 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 39 220 2.1E-75 T 10-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 VF_1762 7e27067fd09379a9b66fea29af3c9b13 239 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 39 206 5.4E-70 T 10-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 VF_1762 7e27067fd09379a9b66fea29af3c9b13 239 SUPERFAMILY SSF55729 9 231 4.56E-87 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A0106 64c42c123b22708b4df4447313efd490 802 Gene3D G3DSA:2.60.40.10 191 283 2.2E-12 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A0106 64c42c123b22708b4df4447313efd490 802 SUPERFAMILY SSF49303 631 722 2.01E-9 T 10-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VF_A0106 64c42c123b22708b4df4447313efd490 802 Pfam PF00703 Glycosyl hydrolases family 2 231 284 4.3E-7 T 10-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VF_A0106 64c42c123b22708b4df4447313efd490 802 Gene3D G3DSA:2.60.120.260 3 190 4.0E-50 T 10-10-2018 IPR008979 Galactose-binding-like domain superfamily VF_A0106 64c42c123b22708b4df4447313efd490 802 SUPERFAMILY SSF49785 2 189 1.06E-49 T 10-10-2018 IPR008979 Galactose-binding-like domain superfamily VF_A0106 64c42c123b22708b4df4447313efd490 802 SUPERFAMILY SSF49303 732 801 3.31E-9 T 10-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VF_A0106 64c42c123b22708b4df4447313efd490 802 SUPERFAMILY SSF49303 206 284 4.32E-14 T 10-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VF_A0106 64c42c123b22708b4df4447313efd490 802 SUPERFAMILY SSF51445 281 629 7.22E-108 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_A0106 64c42c123b22708b4df4447313efd490 802 Gene3D G3DSA:3.20.20.80 284 627 9.3E-123 T 10-10-2018 VF_2589 92ff0345bc7430525aa6142af0f0dea9 238 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 23 237 30.324 T 10-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 VF_2589 92ff0345bc7430525aa6142af0f0dea9 238 SUPERFAMILY SSF53335 15 236 6.35E-38 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_2589 92ff0345bc7430525aa6142af0f0dea9 238 Gene3D G3DSA:3.40.50.150 29 238 4.3E-70 T 10-10-2018 VF_2589 92ff0345bc7430525aa6142af0f0dea9 238 Pfam PF02390 Putative methyltransferase 62 231 2.1E-59 T 10-10-2018 VF_2589 92ff0345bc7430525aa6142af0f0dea9 238 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 48 236 5.0E-68 T 10-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 SUPERFAMILY SSF143517 996 1147 3.01E-40 T 10-10-2018 IPR037235 TRCF-like, C-terminal domain VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 30 1110 27.69 T 10-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 Gene3D G3DSA:3.40.50.300 543 782 5.5E-235 T 10-10-2018 VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 Pfam PF02559 CarD-like/TRCF domain 481 576 4.6E-25 T 10-10-2018 IPR003711 CarD-like/TRCF domain VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 Gene3D G3DSA:2.30.30.840 484 542 5.5E-235 T 10-10-2018 VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 SUPERFAMILY SSF141259 471 549 3.66E-24 T 10-10-2018 IPR036101 CarD-like/TRCF domain superfamily VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 Pfam PF00270 DEAD/DEAH box helicase 607 766 4.9E-20 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 SUPERFAMILY SSF52540 11 344 1.95E-103 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 SMART SM01058 480 577 5.8E-49 T 10-10-2018 IPR003711 CarD-like/TRCF domain VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 SMART SM00982 1009 1109 4.7E-44 T 10-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 Pfam PF03461 TRCF domain 1010 1101 2.4E-25 T 10-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 SUPERFAMILY SSF52540 652 923 1.86E-62 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 SUPERFAMILY SSF52540 351 465 2.28E-28 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 Gene3D G3DSA:3.40.50.11140 356 453 1.9E-33 T 10-10-2018 VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 Gene3D G3DSA:3.90.1150.50 1005 1151 1.4E-42 T 10-10-2018 IPR037235 TRCF-like, C-terminal domain VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 SMART SM00490 827 911 1.0E-16 T 10-10-2018 IPR001650 Helicase, C-terminal VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 Pfam PF00271 Helicase conserved C-terminal domain 806 910 3.9E-17 T 10-10-2018 IPR001650 Helicase, C-terminal VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 Gene3D G3DSA:3.40.50.300 479 991 5.5E-235 T 10-10-2018 VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 SMART SM00487 601 791 1.4E-33 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 148 1083 0.0 T 10-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 Gene3D G3DSA:3.40.50.11180 26 334 5.9E-120 T 10-10-2018 VF_A0460 4eb42c76cc8370931bbf80c66e9fabfe 1151 Gene3D G3DSA:3.30.2060.10 130 215 5.9E-120 T 10-10-2018 VF_2283 9da0a7c67d6f11b74a93a9b6cf699b6c 338 Gene3D G3DSA:3.40.630.30 1 273 1.4E-117 T 10-10-2018 VF_2283 9da0a7c67d6f11b74a93a9b6cf699b6c 338 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 337 4.5E-132 T 10-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 VF_2283 9da0a7c67d6f11b74a93a9b6cf699b6c 338 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 336 2.3E-142 T 10-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 VF_2283 9da0a7c67d6f11b74a93a9b6cf699b6c 338 Gene3D G3DSA:2.40.40.20 276 338 7.3E-6 T 10-10-2018 VF_2283 9da0a7c67d6f11b74a93a9b6cf699b6c 338 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 3 337 2.4E-136 T 10-10-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 VF_2283 9da0a7c67d6f11b74a93a9b6cf699b6c 338 SUPERFAMILY SSF55729 1 336 1.02E-134 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A0995 6772f821c4e9fc4fef0ca817bd9d6c32 276 Pfam PF03239 Iron permease FTR1 family 1 258 6.7E-27 T 10-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 VF_0547 18425281160c7b3bf3f3c437ac7a22b6 264 Pfam PF01578 Cytochrome C assembly protein 36 262 3.4E-41 T 10-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 VF_A0406 ff1ddac1d8963d61b6f96ef89f53d79c 216 SUPERFAMILY SSF81342 1 183 7.06E-32 T 10-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 VF_A0406 ff1ddac1d8963d61b6f96ef89f53d79c 216 Gene3D G3DSA:1.20.950.20 1 164 2.7E-15 T 10-10-2018 VF_A0406 ff1ddac1d8963d61b6f96ef89f53d79c 216 Pfam PF01292 Prokaryotic cytochrome b561 4 175 1.2E-15 T 10-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 VF_1582 1f58a08589a67475181612584da72f02 348 Gene3D G3DSA:1.10.287.470 93 152 2.9E-68 T 10-10-2018 VF_1582 1f58a08589a67475181612584da72f02 348 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 44 258 1.5E-30 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VF_1582 1f58a08589a67475181612584da72f02 348 Gene3D G3DSA:2.40.50.100 58 186 2.9E-68 T 10-10-2018 VF_1582 1f58a08589a67475181612584da72f02 348 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 36 338 1.9E-85 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VF_1582 1f58a08589a67475181612584da72f02 348 Gene3D G3DSA:2.40.30.170 45 268 2.9E-68 T 10-10-2018 VF_1582 1f58a08589a67475181612584da72f02 348 Gene3D G3DSA:2.40.420.20 269 337 2.9E-68 T 10-10-2018 VF_1582 1f58a08589a67475181612584da72f02 348 SUPERFAMILY SSF111369 48 264 5.62E-36 T 10-10-2018 VF_0923 84657458ff1622301f9f952506ca940f 439 SMART SM00448 7 125 1.4E-7 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_0923 84657458ff1622301f9f952506ca940f 439 Gene3D G3DSA:3.40.50.2300 7 123 2.2E-15 T 10-10-2018 VF_0923 84657458ff1622301f9f952506ca940f 439 Gene3D G3DSA:1.25.40.10 124 327 1.2E-10 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0923 84657458ff1622301f9f952506ca940f 439 SUPERFAMILY SSF52172 9 129 1.14E-14 T 10-10-2018 IPR011006 CheY-like superfamily VF_0923 84657458ff1622301f9f952506ca940f 439 Pfam PF00072 Response regulator receiver domain 10 126 2.7E-13 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_0923 84657458ff1622301f9f952506ca940f 439 SUPERFAMILY SSF48452 168 372 3.8E-10 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_2476 9dc4ecc27caad5c5b996bb38b4326f8a 133 PIRSF PIRSF016821 8 133 3.8E-42 T 10-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 VF_2476 9dc4ecc27caad5c5b996bb38b4326f8a 133 SUPERFAMILY SSF55174 11 107 2.09E-28 T 10-10-2018 VF_2476 9dc4ecc27caad5c5b996bb38b4326f8a 133 Gene3D G3DSA:3.10.290.10 3 111 8.1E-35 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VF_2476 9dc4ecc27caad5c5b996bb38b4326f8a 133 SMART SM00363 11 71 3.4E-9 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_2476 9dc4ecc27caad5c5b996bb38b4326f8a 133 Pfam PF01479 S4 domain 11 57 2.0E-13 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_1963 a79e6e63bde758dbf9d70de03cfaadf2 275 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 4 262 2.1E-90 T 10-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 VF_1963 a79e6e63bde758dbf9d70de03cfaadf2 275 Hamap MF_01974 Methionine aminopeptidase [map]. 3 263 40.976 T 10-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 VF_1963 a79e6e63bde758dbf9d70de03cfaadf2 275 Gene3D G3DSA:3.90.230.10 1 273 2.0E-104 T 10-10-2018 VF_1963 a79e6e63bde758dbf9d70de03cfaadf2 275 Pfam PF00557 Metallopeptidase family M24 12 254 3.1E-51 T 10-10-2018 IPR000994 Peptidase M24 VF_1963 a79e6e63bde758dbf9d70de03cfaadf2 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 1.8E-13 T 10-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 VF_1963 a79e6e63bde758dbf9d70de03cfaadf2 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 204 216 1.8E-13 T 10-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 VF_1963 a79e6e63bde758dbf9d70de03cfaadf2 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 174 186 1.8E-13 T 10-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 VF_1963 a79e6e63bde758dbf9d70de03cfaadf2 275 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 180 198 - T 10-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 VF_1963 a79e6e63bde758dbf9d70de03cfaadf2 275 SUPERFAMILY SSF55920 4 263 9.16E-88 T 10-10-2018 IPR036005 Creatinase/aminopeptidase-like VF_A0533 445732c8ea9771f3b081e2c841d15e49 742 SMART SM00248 638 676 210.0 T 10-10-2018 IPR002110 Ankyrin repeat GO:0005515 VF_A0533 445732c8ea9771f3b081e2c841d15e49 742 SMART SM00248 683 712 0.46 T 10-10-2018 IPR002110 Ankyrin repeat GO:0005515 VF_A0533 445732c8ea9771f3b081e2c841d15e49 742 SMART SM00248 456 485 160.0 T 10-10-2018 IPR002110 Ankyrin repeat GO:0005515 VF_A0533 445732c8ea9771f3b081e2c841d15e49 742 SMART SM00248 536 565 0.068 T 10-10-2018 IPR002110 Ankyrin repeat GO:0005515 VF_A0533 445732c8ea9771f3b081e2c841d15e49 742 Gene3D G3DSA:1.25.40.20 647 742 2.2E-8 T 10-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily VF_A0533 445732c8ea9771f3b081e2c841d15e49 742 Gene3D G3DSA:1.25.40.20 433 585 1.1E-13 T 10-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily VF_A0533 445732c8ea9771f3b081e2c841d15e49 742 SUPERFAMILY SSF48403 459 740 1.31E-19 T 10-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily VF_0277 d93223bf25905f6f27d48f4ebae40612 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 10-10-2018 IPR033749 Polyprenyl synthetase, conserved site VF_0277 d93223bf25905f6f27d48f4ebae40612 323 Gene3D G3DSA:1.10.600.10 1 323 5.8E-120 T 10-10-2018 IPR008949 Isoprenoid synthase domain superfamily VF_0277 d93223bf25905f6f27d48f4ebae40612 323 SUPERFAMILY SSF48576 4 322 1.21E-99 T 10-10-2018 IPR008949 Isoprenoid synthase domain superfamily VF_0277 d93223bf25905f6f27d48f4ebae40612 323 Pfam PF00348 Polyprenyl synthetase 32 263 2.3E-74 T 10-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 VF_0277 d93223bf25905f6f27d48f4ebae40612 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 10-10-2018 IPR033749 Polyprenyl synthetase, conserved site VF_A0925 3949f4c0d0e39ba4803f50639fea56ba 250 Pfam PF00196 Bacterial regulatory proteins, luxR family 182 236 1.4E-21 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0925 3949f4c0d0e39ba4803f50639fea56ba 250 Gene3D G3DSA:1.10.10.10 176 244 4.2E-25 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0925 3949f4c0d0e39ba4803f50639fea56ba 250 SUPERFAMILY SSF75516 10 172 7.32E-36 T 10-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily VF_A0925 3949f4c0d0e39ba4803f50639fea56ba 250 Gene3D G3DSA:3.30.450.80 5 171 1.6E-36 T 10-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily VF_A0925 3949f4c0d0e39ba4803f50639fea56ba 250 SMART SM00421 180 237 1.8E-19 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0925 3949f4c0d0e39ba4803f50639fea56ba 250 SUPERFAMILY SSF46894 174 243 2.99E-15 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_A0925 3949f4c0d0e39ba4803f50639fea56ba 250 ProSitePatterns PS00622 LuxR-type HTH domain signature. 197 224 - T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0925 3949f4c0d0e39ba4803f50639fea56ba 250 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 213 225 4.5E-9 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0925 3949f4c0d0e39ba4803f50639fea56ba 250 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 197 4.5E-9 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0925 3949f4c0d0e39ba4803f50639fea56ba 250 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 197 213 4.5E-9 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0925 3949f4c0d0e39ba4803f50639fea56ba 250 Pfam PF03472 Autoinducer binding domain 23 145 8.5E-25 T 10-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain VF_A0727 e58800e6e2626baa4d2982c04b96e504 115 Pfam PF08888 HopJ type III effector protein 4 112 1.1E-51 T 10-10-2018 IPR014984 HopJ type III effector protein VF_A0727 e58800e6e2626baa4d2982c04b96e504 115 Gene3D G3DSA:3.20.160.10 1 115 6.6E-52 T 10-10-2018 IPR038604 Type III effector HopJ superfamily VF_A0859 262d27204d7dfcab6b569de939d1e0a2 624 Gene3D G3DSA:1.10.287.950 294 624 1.7E-64 T 10-10-2018 VF_A0859 262d27204d7dfcab6b569de939d1e0a2 624 Gene3D G3DSA:3.30.450.20 148 267 9.7E-9 T 10-10-2018 VF_A0859 262d27204d7dfcab6b569de939d1e0a2 624 SUPERFAMILY SSF58104 340 623 1.18E-63 T 10-10-2018 VF_A0859 262d27204d7dfcab6b569de939d1e0a2 624 SMART SM00283 361 622 2.6E-64 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0859 262d27204d7dfcab6b569de939d1e0a2 624 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 375 404 7.1E-5 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0859 262d27204d7dfcab6b569de939d1e0a2 624 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 488 517 7.1E-5 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0859 262d27204d7dfcab6b569de939d1e0a2 624 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 409 586 1.7E-39 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_2496 86721a7afdcdf1c9323b94060fdeee71 441 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 84 109 - T 10-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 VF_2496 86721a7afdcdf1c9323b94060fdeee71 441 SMART SM00220 78 355 7.6E-25 T 10-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 VF_2496 86721a7afdcdf1c9323b94060fdeee71 441 Pfam PF00069 Protein kinase domain 78 272 3.9E-37 T 10-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 VF_2496 86721a7afdcdf1c9323b94060fdeee71 441 SUPERFAMILY SSF56112 74 286 2.83E-51 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily VF_2496 86721a7afdcdf1c9323b94060fdeee71 441 Gene3D G3DSA:1.10.510.10 69 324 2.5E-49 T 10-10-2018 VF_2496 86721a7afdcdf1c9323b94060fdeee71 441 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 197 209 - T 10-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 VF_A0758 24178c0694f420a245c04d633d2b74c4 167 SUPERFAMILY SSF54626 57 164 1.18E-5 T 10-10-2018 IPR036298 Chalcone isomerase superfamily GO:0016872 VF_A0758 24178c0694f420a245c04d633d2b74c4 167 Gene3D G3DSA:3.50.70.10 14 149 8.1E-7 T 10-10-2018 IPR016088 Chalcone isomerase, 3-layer sandwich KEGG: 00941+5.5.1.6|MetaCyc: PWY-2002|MetaCyc: PWY-5059|MetaCyc: PWY-6325|MetaCyc: PWY-6787|MetaCyc: PWY-7397|MetaCyc: PWY-7897 VF_A0758 24178c0694f420a245c04d633d2b74c4 167 Pfam PF16036 Chalcone isomerase-like 38 165 5.6E-13 T 10-10-2018 IPR016087 Chalcone isomerase GO:0016872 VF_A0911 eab1618f8b985d5c95134714a4df0aac 302 Pfam PF03466 LysR substrate binding domain 86 290 3.2E-34 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0911 eab1618f8b985d5c95134714a4df0aac 302 Gene3D G3DSA:3.40.190.290 91 291 1.9E-44 T 10-10-2018 VF_A0911 eab1618f8b985d5c95134714a4df0aac 302 SUPERFAMILY SSF46785 5 110 7.17E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0911 eab1618f8b985d5c95134714a4df0aac 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 1.4E-18 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0911 eab1618f8b985d5c95134714a4df0aac 302 Gene3D G3DSA:1.10.10.10 1 90 8.5E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0911 eab1618f8b985d5c95134714a4df0aac 302 SUPERFAMILY SSF53850 87 292 7.06E-37 T 10-10-2018 VF_1761 28d5e57f536c62f0ba9a54bb9ae98eb8 426 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 10 426 34.161 T 10-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VF_1761 28d5e57f536c62f0ba9a54bb9ae98eb8 426 ProSitePatterns PS00104 EPSP synthase signature 1. 90 104 - T 10-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VF_1761 28d5e57f536c62f0ba9a54bb9ae98eb8 426 SUPERFAMILY SSF55205 1 424 4.11E-143 T 10-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 VF_1761 28d5e57f536c62f0ba9a54bb9ae98eb8 426 Gene3D G3DSA:3.65.10.10 242 419 5.4E-159 T 10-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 VF_1761 28d5e57f536c62f0ba9a54bb9ae98eb8 426 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 421 6.4E-157 T 10-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 VF_1761 28d5e57f536c62f0ba9a54bb9ae98eb8 426 ProSitePatterns PS00885 EPSP synthase signature 2. 339 357 - T 10-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VF_1761 28d5e57f536c62f0ba9a54bb9ae98eb8 426 Gene3D G3DSA:3.65.10.10 20 224 5.4E-159 T 10-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 VF_1761 28d5e57f536c62f0ba9a54bb9ae98eb8 426 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 14 424 2.4E-144 T 10-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VF_1761 28d5e57f536c62f0ba9a54bb9ae98eb8 426 PIRSF PIRSF000505 1 426 5.9E-156 T 10-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VF_0783 82092c7ff6527ff82239046bbc693840 284 Gene3D G3DSA:1.25.40.10 197 284 9.7E-22 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0783 82092c7ff6527ff82239046bbc693840 284 Gene3D G3DSA:1.25.40.10 112 196 2.3E-21 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0783 82092c7ff6527ff82239046bbc693840 284 Gene3D G3DSA:3.40.30.10 1 111 1.0E-24 T 10-10-2018 VF_0783 82092c7ff6527ff82239046bbc693840 284 SUPERFAMILY SSF48452 111 246 5.82E-10 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0783 82092c7ff6527ff82239046bbc693840 284 Pfam PF00085 Thioredoxin 7 109 2.3E-17 T 10-10-2018 IPR013766 Thioredoxin domain GO:0045454 VF_0783 82092c7ff6527ff82239046bbc693840 284 SUPERFAMILY SSF52833 4 112 1.85E-26 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_0783 82092c7ff6527ff82239046bbc693840 284 Pfam PF14559 Tetratricopeptide repeat 124 190 1.3E-14 T 10-10-2018 VF_0783 82092c7ff6527ff82239046bbc693840 284 Pfam PF14561 Tetratricopeptide repeat 195 284 6.3E-27 T 10-10-2018 VF_1996 164293337a431a5815d16214ce0299fa 194 SUPERFAMILY SSF58014 40 138 6.93E-28 T 10-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 VF_1996 164293337a431a5815d16214ce0299fa 194 Gene3D G3DSA:2.30.22.10 138 194 2.4E-24 T 10-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 VF_1996 164293337a431a5815d16214ce0299fa 194 Pfam PF01025 GrpE 30 194 6.9E-53 T 10-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VF_1996 164293337a431a5815d16214ce0299fa 194 Hamap MF_01151 Protein GrpE [grpE]. 2 194 21.754 T 10-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VF_1996 164293337a431a5815d16214ce0299fa 194 SUPERFAMILY SSF51064 140 194 2.35E-19 T 10-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 VF_1996 164293337a431a5815d16214ce0299fa 194 ProSitePatterns PS01071 grpE protein signature. 149 192 - T 10-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VF_1996 164293337a431a5815d16214ce0299fa 194 PRINTS PR00773 GrpE protein signature 173 192 1.8E-27 T 10-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VF_1996 164293337a431a5815d16214ce0299fa 194 PRINTS PR00773 GrpE protein signature 63 79 1.8E-27 T 10-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VF_1996 164293337a431a5815d16214ce0299fa 194 PRINTS PR00773 GrpE protein signature 91 106 1.8E-27 T 10-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VF_1996 164293337a431a5815d16214ce0299fa 194 PRINTS PR00773 GrpE protein signature 146 161 1.8E-27 T 10-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VF_1996 164293337a431a5815d16214ce0299fa 194 Gene3D G3DSA:3.90.20.20 31 137 8.7E-31 T 10-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 VF_A0074 6668de93603541adc4503efd4231da68 306 SUPERFAMILY SSF53187 36 292 3.18E-33 T 10-10-2018 VF_A0074 6668de93603541adc4503efd4231da68 306 Gene3D G3DSA:3.40.630.10 4 306 6.3E-115 T 10-10-2018 VF_A0074 6668de93603541adc4503efd4231da68 306 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 79 178 1.3E-5 T 10-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 VF_0186 26d3552c43cda0ff239f3a270b2b06e0 340 SUPERFAMILY SSF51735 25 340 2.17E-49 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0186 26d3552c43cda0ff239f3a270b2b06e0 340 Pfam PF01370 NAD dependent epimerase/dehydratase family 31 272 4.1E-27 T 10-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 VF_0186 26d3552c43cda0ff239f3a270b2b06e0 340 Gene3D G3DSA:3.40.50.720 32 325 2.1E-50 T 10-10-2018 VF_0186 26d3552c43cda0ff239f3a270b2b06e0 340 Gene3D G3DSA:3.90.25.10 207 339 2.1E-50 T 10-10-2018 VF_0086 cf21efc905293871cc4313d7211934f8 394 Pfam PF03486 HI0933-like protein 5 391 1.7E-158 T 10-10-2018 VF_0086 cf21efc905293871cc4313d7211934f8 394 SUPERFAMILY SSF160996 190 338 3.53E-42 T 10-10-2018 VF_0086 cf21efc905293871cc4313d7211934f8 394 Gene3D G3DSA:2.40.30.10 188 339 2.3E-136 T 10-10-2018 VF_0086 cf21efc905293871cc4313d7211934f8 394 SUPERFAMILY SSF51905 1 394 2.89E-60 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0086 cf21efc905293871cc4313d7211934f8 394 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 391 3.6E-137 T 10-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like VF_0086 cf21efc905293871cc4313d7211934f8 394 Gene3D G3DSA:1.10.8.260 262 322 2.3E-136 T 10-10-2018 IPR023166 HI0933-like insert domain superfamily VF_0086 cf21efc905293871cc4313d7211934f8 394 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 347 369 4.0E-7 T 10-10-2018 VF_0086 cf21efc905293871cc4313d7211934f8 394 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 4.0E-7 T 10-10-2018 VF_0086 cf21efc905293871cc4313d7211934f8 394 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 4.0E-7 T 10-10-2018 VF_0086 cf21efc905293871cc4313d7211934f8 394 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.8E-9 T 10-10-2018 VF_0086 cf21efc905293871cc4313d7211934f8 394 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 164 1.8E-9 T 10-10-2018 VF_0086 cf21efc905293871cc4313d7211934f8 394 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 362 369 1.8E-9 T 10-10-2018 VF_0086 cf21efc905293871cc4313d7211934f8 394 Gene3D G3DSA:3.50.50.60 7 388 2.3E-136 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2335 e6d9547b298ab15155ef46dd3d6b9c69 247 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 59 67 - T 10-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 VF_2335 e6d9547b298ab15155ef46dd3d6b9c69 247 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 12 230 3.7E-93 T 10-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2335 e6d9547b298ab15155ef46dd3d6b9c69 247 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 10 112 1.7E-32 T 10-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2335 e6d9547b298ab15155ef46dd3d6b9c69 247 Gene3D G3DSA:1.10.1060.10 108 245 2.2E-49 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_2335 e6d9547b298ab15155ef46dd3d6b9c69 247 Pfam PF13183 4Fe-4S dicluster domain 148 220 1.0E-10 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_2335 e6d9547b298ab15155ef46dd3d6b9c69 247 SUPERFAMILY SSF46548 108 226 8.2E-30 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_2335 e6d9547b298ab15155ef46dd3d6b9c69 247 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 150 161 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_2335 e6d9547b298ab15155ef46dd3d6b9c69 247 SUPERFAMILY SSF54292 6 107 9.7E-29 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VF_2335 e6d9547b298ab15155ef46dd3d6b9c69 247 Gene3D G3DSA:3.10.20.30 2 107 4.1E-34 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_1961 cefdf5aa9f6602b37dff82402f4418cf 281 Gene3D G3DSA:3.30.479.20 57 140 9.4E-26 T 10-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 VF_1961 cefdf5aa9f6602b37dff82402f4418cf 281 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 280 6.7E-103 T 10-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VF_1961 cefdf5aa9f6602b37dff82402f4418cf 281 SUPERFAMILY SSF54713 56 137 1.87E-17 T 10-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 VF_1961 cefdf5aa9f6602b37dff82402f4418cf 281 SUPERFAMILY SSF54713 142 280 6.93E-46 T 10-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 VF_1961 cefdf5aa9f6602b37dff82402f4418cf 281 Gene3D G3DSA:1.10.286.20 185 224 1.6E-21 T 10-10-2018 VF_1961 cefdf5aa9f6602b37dff82402f4418cf 281 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 10-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VF_1961 cefdf5aa9f6602b37dff82402f4418cf 281 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 10-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VF_1961 cefdf5aa9f6602b37dff82402f4418cf 281 SUPERFAMILY SSF46934 4 54 1.63E-17 T 10-10-2018 IPR009060 UBA-like superfamily GO:0005515 VF_1961 cefdf5aa9f6602b37dff82402f4418cf 281 Gene3D G3DSA:1.10.8.10 1 56 2.0E-25 T 10-10-2018 VF_1961 cefdf5aa9f6602b37dff82402f4418cf 281 Pfam PF00889 Elongation factor TS 71 261 1.3E-60 T 10-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 VF_1961 cefdf5aa9f6602b37dff82402f4418cf 281 Hamap MF_00050 Elongation factor Ts [tsf]. 1 280 76.175 T 10-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VF_0561 1320d951812722061333dc3a93a16358 392 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 328 335 - T 10-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 VF_0561 1320d951812722061333dc3a93a16358 392 SUPERFAMILY SSF53850 108 294 1.3E-54 T 10-10-2018 VF_0561 1320d951812722061333dc3a93a16358 392 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 264 286 - T 10-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 VF_0561 1320d951812722061333dc3a93a16358 392 SUPERFAMILY SSF55021 283 380 5.49E-24 T 10-10-2018 VF_0561 1320d951812722061333dc3a93a16358 392 Gene3D G3DSA:3.40.190.10 192 277 3.7E-53 T 10-10-2018 VF_0561 1320d951812722061333dc3a93a16358 392 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 8 90 1.3E-27 T 10-10-2018 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 VF_0561 1320d951812722061333dc3a93a16358 392 Gene3D G3DSA:3.40.190.10 112 286 3.7E-53 T 10-10-2018 VF_0561 1320d951812722061333dc3a93a16358 392 Gene3D G3DSA:3.30.70.260 294 382 4.5E-24 T 10-10-2018 VF_0561 1320d951812722061333dc3a93a16358 392 SMART SM00830 12 92 5.7E-25 T 10-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VF_0561 1320d951812722061333dc3a93a16358 392 Gene3D G3DSA:1.20.59.10 3 111 2.3E-31 T 10-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VF_0561 1320d951812722061333dc3a93a16358 392 Pfam PF00800 Prephenate dehydratase 109 290 1.1E-58 T 10-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 VF_0561 1320d951812722061333dc3a93a16358 392 Pfam PF01817 Chorismate mutase type II 12 90 2.0E-17 T 10-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VF_0561 1320d951812722061333dc3a93a16358 392 PIRSF PIRSF001500 1 383 2.8E-138 T 10-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 VF_0561 1320d951812722061333dc3a93a16358 392 SUPERFAMILY SSF48600 7 95 1.15E-21 T 10-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VF_1848 240775b32b6ba7e04bf0c6774b44aea5 147 Pfam PF02050 Flagellar FliJ protein 18 140 1.5E-27 T 10-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 VF_1848 240775b32b6ba7e04bf0c6774b44aea5 147 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 4 142 1.0E-32 T 10-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 VF_A0770 37c57405b05bbed115d5e10cf355916e 400 Gene3D G3DSA:1.20.1720.10 19 395 5.3E-87 T 10-10-2018 VF_A0770 37c57405b05bbed115d5e10cf355916e 400 SUPERFAMILY SSF103473 9 393 1.27E-59 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0770 37c57405b05bbed115d5e10cf355916e 400 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 19 390 1.4E-62 T 10-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 VF_A0770 37c57405b05bbed115d5e10cf355916e 400 Pfam PF07690 Major Facilitator Superfamily 30 362 2.2E-44 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_0792 b088b9815a47427787d7fae127015b20 631 Gene3D G3DSA:3.30.230.80 235 402 1.4E-70 T 10-10-2018 VF_0792 b088b9815a47427787d7fae127015b20 631 Gene3D G3DSA:1.20.120.790 497 630 5.6E-42 T 10-10-2018 IPR037196 HSP90, C-terminal domain VF_0792 b088b9815a47427787d7fae127015b20 631 SUPERFAMILY SSF54211 236 491 3.11E-98 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_0792 b088b9815a47427787d7fae127015b20 631 PRINTS PR00775 90kDa heat shock protein signature 9 29 2.8E-62 T 10-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VF_0792 b088b9815a47427787d7fae127015b20 631 PRINTS PR00775 90kDa heat shock protein signature 30 52 2.8E-62 T 10-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VF_0792 b088b9815a47427787d7fae127015b20 631 PRINTS PR00775 90kDa heat shock protein signature 97 114 2.8E-62 T 10-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VF_0792 b088b9815a47427787d7fae127015b20 631 PRINTS PR00775 90kDa heat shock protein signature 79 96 2.8E-62 T 10-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VF_0792 b088b9815a47427787d7fae127015b20 631 PRINTS PR00775 90kDa heat shock protein signature 194 212 2.8E-62 T 10-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VF_0792 b088b9815a47427787d7fae127015b20 631 PRINTS PR00775 90kDa heat shock protein signature 124 146 2.8E-62 T 10-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VF_0792 b088b9815a47427787d7fae127015b20 631 PRINTS PR00775 90kDa heat shock protein signature 176 193 2.8E-62 T 10-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VF_0792 b088b9815a47427787d7fae127015b20 631 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 29 38 - T 10-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 VF_0792 b088b9815a47427787d7fae127015b20 631 Gene3D G3DSA:3.40.50.11260 403 492 9.7E-33 T 10-10-2018 VF_0792 b088b9815a47427787d7fae127015b20 631 SUPERFAMILY SSF110942 518 630 5.75E-34 T 10-10-2018 IPR037196 HSP90, C-terminal domain VF_0792 b088b9815a47427787d7fae127015b20 631 Hamap MF_00505 Chaperone protein HtpG [htpG]. 6 630 32.015 T 10-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 VF_0792 b088b9815a47427787d7fae127015b20 631 SUPERFAMILY SSF55874 9 215 1.19E-63 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0792 b088b9815a47427787d7fae127015b20 631 SMART SM00387 31 188 1.2E-7 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0792 b088b9815a47427787d7fae127015b20 631 PIRSF PIRSF002583 1 631 2.1E-213 T 10-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 VF_0792 b088b9815a47427787d7fae127015b20 631 Gene3D G3DSA:3.30.565.10 5 219 1.3E-75 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0792 b088b9815a47427787d7fae127015b20 631 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 175 1.7E-13 T 10-10-2018 VF_0792 b088b9815a47427787d7fae127015b20 631 Pfam PF00183 Hsp90 protein 220 630 3.5E-126 T 10-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 VF_0319 52085eb5a84f8c9c61b2ef7bb0e79217 660 Pfam PF02872 5'-nucleotidase, C-terminal domain 369 561 8.0E-19 T 10-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0319 52085eb5a84f8c9c61b2ef7bb0e79217 660 ProSitePatterns PS00786 5'-nucleotidase signature 2. 122 133 - T 10-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0319 52085eb5a84f8c9c61b2ef7bb0e79217 660 Pfam PF00149 Calcineurin-like phosphoesterase 37 272 3.6E-10 T 10-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VF_0319 52085eb5a84f8c9c61b2ef7bb0e79217 660 Gene3D G3DSA:3.60.21.10 30 367 5.9E-135 T 10-10-2018 IPR029052 Metallo-dependent phosphatase-like VF_0319 52085eb5a84f8c9c61b2ef7bb0e79217 660 SUPERFAMILY SSF56300 33 367 3.37E-86 T 10-10-2018 VF_0319 52085eb5a84f8c9c61b2ef7bb0e79217 660 Gene3D G3DSA:3.90.780.10 419 600 1.4E-49 T 10-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0319 52085eb5a84f8c9c61b2ef7bb0e79217 660 TIGRFAM TIGR01390 CycNucDiestase: 2',3'-cyclic-nucleotide 2'-phosphodiesterase 35 660 0.0 T 10-10-2018 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase GO:0008663|GO:0009117 KEGG: 00230+3.1.4.16+3.1.3.6|KEGG: 00240+3.1.4.16+3.1.3.6 VF_0319 52085eb5a84f8c9c61b2ef7bb0e79217 660 SUPERFAMILY SSF55816 368 610 2.22E-36 T 10-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0319 52085eb5a84f8c9c61b2ef7bb0e79217 660 PRINTS PR01607 Apyrase family signature 228 245 1.9E-28 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0319 52085eb5a84f8c9c61b2ef7bb0e79217 660 PRINTS PR01607 Apyrase family signature 296 316 1.9E-28 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0319 52085eb5a84f8c9c61b2ef7bb0e79217 660 PRINTS PR01607 Apyrase family signature 543 562 1.9E-28 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0319 52085eb5a84f8c9c61b2ef7bb0e79217 660 PRINTS PR01607 Apyrase family signature 441 464 1.9E-28 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0319 52085eb5a84f8c9c61b2ef7bb0e79217 660 PRINTS PR01607 Apyrase family signature 35 53 1.9E-28 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0319 52085eb5a84f8c9c61b2ef7bb0e79217 660 PRINTS PR01607 Apyrase family signature 256 279 1.9E-28 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_A1073 c55b0321cf8da499c67be660f958b520 533 Gene3D G3DSA:1.10.287.950 197 533 1.9E-59 T 10-10-2018 VF_A1073 c55b0321cf8da499c67be660f958b520 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 368 395 4.8E-21 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A1073 c55b0321cf8da499c67be660f958b520 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 291 320 4.8E-21 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A1073 c55b0321cf8da499c67be660f958b520 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 21 4.8E-21 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A1073 c55b0321cf8da499c67be660f958b520 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 397 426 4.8E-21 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A1073 c55b0321cf8da499c67be660f958b520 533 SUPERFAMILY SSF58104 232 531 1.74E-64 T 10-10-2018 VF_A1073 c55b0321cf8da499c67be660f958b520 533 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 332 499 1.6E-40 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A1073 c55b0321cf8da499c67be660f958b520 533 SMART SM00283 270 531 1.6E-55 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0836 af172058d2eafa195e42113990455be3 350 SUPERFAMILY SSF51430 1 349 3.54E-97 T 10-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VF_A0836 af172058d2eafa195e42113990455be3 350 Gene3D G3DSA:3.20.20.100 1 350 8.1E-112 T 10-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VF_A0836 af172058d2eafa195e42113990455be3 350 Pfam PF00248 Aldo/keto reductase family 15 340 4.7E-65 T 10-10-2018 IPR023210 NADP-dependent oxidoreductase domain VF_0755 e40b898b4e19c99c9495ae3196a36274 504 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 7 489 23.498 T 10-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 VF_0755 e40b898b4e19c99c9495ae3196a36274 504 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 60 452 3.9E-91 T 10-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 VF_0755 e40b898b4e19c99c9495ae3196a36274 504 Pfam PF00795 Carbon-nitrogen hydrolase 220 468 4.9E-33 T 10-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 VF_0755 e40b898b4e19c99c9495ae3196a36274 504 SUPERFAMILY SSF56317 214 483 2.75E-37 T 10-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VF_0755 e40b898b4e19c99c9495ae3196a36274 504 Gene3D G3DSA:3.60.110.10 211 469 4.3E-10 T 10-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 Gene3D G3DSA:3.30.565.10 391 553 7.2E-51 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 Pfam PF00072 Response regulator receiver domain 574 686 3.9E-26 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 529 2.8E-18 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 476 490 2.8E-18 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 535 548 2.8E-18 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 494 504 2.8E-18 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 SMART SM00388 327 392 1.1E-19 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 Gene3D G3DSA:3.30.450.20 199 301 5.2E-5 T 10-10-2018 VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 SMART SM00448 572 687 4.4E-32 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 Gene3D G3DSA:3.40.50.2300 555 690 4.4E-38 T 10-10-2018 VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 SUPERFAMILY SSF52172 571 690 5.41E-34 T 10-10-2018 IPR011006 CheY-like superfamily VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 Gene3D G3DSA:1.10.287.130 302 390 3.7E-26 T 10-10-2018 VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 SUPERFAMILY SSF55785 207 309 1.03E-7 T 10-10-2018 IPR035965 PAS domain superfamily VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 SUPERFAMILY SSF55874 381 550 9.3E-48 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 Pfam PF00512 His Kinase A (phospho-acceptor) domain 327 392 3.6E-17 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 440 550 1.3E-32 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 SUPERFAMILY SSF47384 313 393 2.16E-21 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_1296 c74474ffd442444f6c0eeb258d2e14a0 692 SMART SM00387 439 551 2.5E-40 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1653 6828c2ed450113fa309917d24a2700c4 271 SUPERFAMILY SSF53167 25 249 6.15E-43 T 10-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VF_1653 6828c2ed450113fa309917d24a2700c4 271 Gene3D G3DSA:3.40.50.1580 22 270 1.5E-82 T 10-10-2018 VF_1653 6828c2ed450113fa309917d24a2700c4 271 Pfam PF01048 Phosphorylase superfamily 26 252 8.9E-32 T 10-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VF_1587 bd0f4895239ae0704356697b76e12969 258 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 252 1.3E-62 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_1587 bd0f4895239ae0704356697b76e12969 258 SUPERFAMILY SSF53850 1 255 6.04E-71 T 10-10-2018 VF_1587 bd0f4895239ae0704356697b76e12969 258 SMART SM00062 26 254 6.9E-71 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_1587 bd0f4895239ae0704356697b76e12969 258 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 5 251 4.7E-89 T 10-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 VF_1587 bd0f4895239ae0704356697b76e12969 258 Gene3D G3DSA:3.40.190.10 112 210 2.1E-74 T 10-10-2018 VF_1587 bd0f4895239ae0704356697b76e12969 258 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 49 62 - T 10-10-2018 IPR018313 Solute-binding protein family 3, conserved site VF_1587 bd0f4895239ae0704356697b76e12969 258 Gene3D G3DSA:3.40.190.10 30 251 2.1E-74 T 10-10-2018 VF_1587 bd0f4895239ae0704356697b76e12969 258 SMART SM00079 26 253 0.0019 T 10-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 VF_A0216 832e05db1f0ec88e074368a2480e6e09 382 Pfam PF00563 EAL domain 138 289 5.3E-14 T 10-10-2018 IPR001633 EAL domain VF_A0216 832e05db1f0ec88e074368a2480e6e09 382 SMART SM00448 5 125 2.9E-4 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0216 832e05db1f0ec88e074368a2480e6e09 382 Gene3D G3DSA:3.40.50.2300 3 135 4.2E-16 T 10-10-2018 VF_A0216 832e05db1f0ec88e074368a2480e6e09 382 Pfam PF00072 Response regulator receiver domain 7 123 4.9E-12 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0216 832e05db1f0ec88e074368a2480e6e09 382 Gene3D G3DSA:3.20.20.450 139 368 1.5E-13 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0216 832e05db1f0ec88e074368a2480e6e09 382 SUPERFAMILY SSF52172 3 128 1.71E-14 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0216 832e05db1f0ec88e074368a2480e6e09 382 SUPERFAMILY SSF141868 144 372 1.57E-15 T 10-10-2018 IPR035919 EAL domain superfamily VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 SUPERFAMILY SSF118116 478 658 7.98E-34 T 10-10-2018 IPR037198 MutL, C-terminal domain superfamily VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 657 25.307 T 10-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 Gene3D G3DSA:3.30.565.10 1 216 5.2E-72 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 10-10-2018 IPR014762 DNA mismatch repair, conserved site VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 119 5.3E-13 T 10-10-2018 VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 Gene3D G3DSA:3.30.230.10 217 329 1.2E-40 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 SUPERFAMILY SSF54211 191 330 2.54E-39 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 SMART SM00853 482 616 3.2E-11 T 10-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 1.6E-100 T 10-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 Gene3D G3DSA:3.30.1370.100 524 611 5.0E-54 T 10-10-2018 VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 Gene3D G3DSA:2.30.42.20 479 656 5.0E-54 T 10-10-2018 VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 SUPERFAMILY SSF55874 1 205 4.85E-54 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 213 329 7.1E-39 T 10-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 Pfam PF08676 MutL C terminal dimerisation domain 479 612 9.8E-27 T 10-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 VF_2325 2ca4e2983ae134bd787f2142fba7a81d 660 SMART SM01340 212 330 4.3E-60 T 10-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 VF_1264 235f7f1648d768dfd7ed8494a86ea15d 478 SUPERFAMILY SSF51556 87 386 2.56E-82 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_1264 235f7f1648d768dfd7ed8494a86ea15d 478 SUPERFAMILY SSF51338 30 456 7.31E-31 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_1264 235f7f1648d768dfd7ed8494a86ea15d 478 Gene3D G3DSA:3.20.20.140 88 378 1.1E-136 T 10-10-2018 VF_1264 235f7f1648d768dfd7ed8494a86ea15d 478 Gene3D G3DSA:2.30.40.10 38 450 1.1E-136 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_1264 235f7f1648d768dfd7ed8494a86ea15d 478 Pfam PF01979 Amidohydrolase family 84 434 1.9E-67 T 10-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VF_1505 a62fda887fcd797ca253f342d9943869 396 Gene3D G3DSA:2.30.130.10 1 72 1.8E-28 T 10-10-2018 IPR036974 PUA domain superfamily GO:0003723 VF_1505 a62fda887fcd797ca253f342d9943869 396 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 170 374 3.7E-31 T 10-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 VF_1505 a62fda887fcd797ca253f342d9943869 396 Gene3D G3DSA:3.30.750.80 73 181 7.1E-38 T 10-10-2018 VF_1505 a62fda887fcd797ca253f342d9943869 396 Hamap MF_01857 Ribosomal RNA large subunit methyltransferase I [rlmI]. 1 396 72.617 T 10-10-2018 IPR023542 rRNA large subunit methyltransferase I GO:0008649 VF_1505 a62fda887fcd797ca253f342d9943869 396 SUPERFAMILY SSF53335 79 392 4.73E-73 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_1505 a62fda887fcd797ca253f342d9943869 396 Gene3D G3DSA:3.40.50.150 182 396 2.3E-71 T 10-10-2018 VF_1505 a62fda887fcd797ca253f342d9943869 396 SUPERFAMILY SSF88697 4 72 5.97E-18 T 10-10-2018 IPR015947 PUA-like superfamily VF_1505 a62fda887fcd797ca253f342d9943869 396 SMART SM00359 3 88 6.9E-16 T 10-10-2018 IPR002478 PUA domain GO:0003723 VF_A1021 9f45731485cf73cda046c8d1ead52a71 274 PRINTS PR01021 OMPA domain signature 187 202 2.8E-8 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A1021 9f45731485cf73cda046c8d1ead52a71 274 PRINTS PR01021 OMPA domain signature 202 218 2.8E-8 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A1021 9f45731485cf73cda046c8d1ead52a71 274 PRINTS PR01021 OMPA domain signature 157 179 2.8E-8 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A1021 9f45731485cf73cda046c8d1ead52a71 274 SUPERFAMILY SSF103088 148 257 6.93E-27 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A1021 9f45731485cf73cda046c8d1ead52a71 274 Gene3D G3DSA:3.30.1330.60 120 263 5.0E-26 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A1021 9f45731485cf73cda046c8d1ead52a71 274 Pfam PF00691 OmpA family 157 251 1.5E-19 T 10-10-2018 IPR006665 OmpA-like domain VF_0139 e710d86b16ad7dc220c94d3cfc13973d 341 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 340 7.4E-147 T 10-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 VF_0139 e710d86b16ad7dc220c94d3cfc13973d 341 Gene3D G3DSA:3.40.50.2000 165 341 1.5E-59 T 10-10-2018 VF_0139 e710d86b16ad7dc220c94d3cfc13973d 341 SUPERFAMILY SSF53756 1 340 8.0E-96 T 10-10-2018 VF_0139 e710d86b16ad7dc220c94d3cfc13973d 341 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 325 4.3E-73 T 10-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 VF_0139 e710d86b16ad7dc220c94d3cfc13973d 341 Gene3D G3DSA:3.40.50.2000 1 149 1.5E-54 T 10-10-2018 VF_1124 d195305b4326bebb000047f7cb01885f 495 Pfam PF00854 POT family 80 439 6.9E-80 T 10-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 VF_1124 d195305b4326bebb000047f7cb01885f 495 SUPERFAMILY SSF103473 1 479 2.09E-27 T 10-10-2018 IPR036259 MFS transporter superfamily VF_1124 d195305b4326bebb000047f7cb01885f 495 Gene3D G3DSA:1.20.1250.20 3 481 3.8E-112 T 10-10-2018 VF_1124 d195305b4326bebb000047f7cb01885f 495 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 7 481 6.5E-159 T 10-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 VF_1124 d195305b4326bebb000047f7cb01885f 495 Hamap MF_01879 Dipeptide and tripeptide permease B [dtpB]. 1 484 49.777 T 10-10-2018 IPR023778 Amino acid/peptide transporter family, dipeptide/tripeptide permease B VF_1124 d195305b4326bebb000047f7cb01885f 495 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 143 155 - T 10-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 SUPERFAMILY SSF82866 299 500 5.36E-48 T 10-10-2018 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 Gene3D G3DSA:3.30.2090.10 724 812 0.0 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 Gene3D G3DSA:3.30.70.1430 39 820 0.0 T 10-10-2018 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 SUPERFAMILY SSF82714 184 273 2.09E-22 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1034 0.0 T 10-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 Gene3D G3DSA:3.30.70.1440 672 869 0.0 T 10-10-2018 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 Gene3D G3DSA:1.20.1640.10 9 512 0.0 T 10-10-2018 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 SUPERFAMILY SSF82693 136 332 1.13E-21 T 10-10-2018 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 SUPERFAMILY SSF82714 725 809 8.11E-21 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 Gene3D G3DSA:3.30.70.1320 134 334 0.0 T 10-10-2018 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 SUPERFAMILY SSF82693 39 132 3.66E-26 T 10-10-2018 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 Gene3D G3DSA:1.20.1640.10 513 1027 0.0 T 10-10-2018 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 Gene3D G3DSA:3.30.70.1430 567 671 0.0 T 10-10-2018 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 SUPERFAMILY SSF82866 808 1035 2.62E-43 T 10-10-2018 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 SUPERFAMILY SSF82693 565 674 1.94E-21 T 10-10-2018 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 Pfam PF00873 AcrB/AcrD/AcrF family 3 1030 0.0 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 4.3E-92 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 PRINTS PR00702 Acriflavin resistance protein family signature 473 496 4.3E-92 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 4.3E-92 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 4.3E-92 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 4.3E-92 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 PRINTS PR00702 Acriflavin resistance protein family signature 448 471 4.3E-92 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 PRINTS PR00702 Acriflavin resistance protein family signature 621 635 4.3E-92 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 4.3E-92 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A1149 daebd471099041be661a62d7bd3ca9e5 1050 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 4.3E-92 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_2442 05adfc5886de820be8df64f8b46f81bb 208 SUPERFAMILY SSF51306 81 203 2.79E-36 T 10-10-2018 IPR036286 LexA/Signal peptidase-like superfamily VF_2442 05adfc5886de820be8df64f8b46f81bb 208 Hamap MF_00015 LexA repressor [lexA]. 3 205 31.358 T 10-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 VF_2442 05adfc5886de820be8df64f8b46f81bb 208 Gene3D G3DSA:1.10.10.10 1 69 2.0E-27 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2442 05adfc5886de820be8df64f8b46f81bb 208 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 156 168 1.5E-13 T 10-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 VF_2442 05adfc5886de820be8df64f8b46f81bb 208 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 128 139 1.5E-13 T 10-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 VF_2442 05adfc5886de820be8df64f8b46f81bb 208 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 117 127 1.5E-13 T 10-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 VF_2442 05adfc5886de820be8df64f8b46f81bb 208 TIGRFAM TIGR00498 lexA: repressor LexA 1 204 9.0E-81 T 10-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 VF_2442 05adfc5886de820be8df64f8b46f81bb 208 Pfam PF00717 Peptidase S24-like 120 185 2.9E-15 T 10-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C VF_2442 05adfc5886de820be8df64f8b46f81bb 208 Gene3D G3DSA:2.10.109.10 86 208 9.1E-44 T 10-10-2018 VF_2442 05adfc5886de820be8df64f8b46f81bb 208 SUPERFAMILY SSF46785 3 69 5.83E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_2442 05adfc5886de820be8df64f8b46f81bb 208 Pfam PF01726 LexA DNA binding domain 1 65 1.1E-29 T 10-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 VF_A0561 f894924646d5b7bd48677e18ffde734f 218 SUPERFAMILY SSF46894 125 216 1.33E-27 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_A0561 f894924646d5b7bd48677e18ffde734f 218 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 1.8E-23 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0561 f894924646d5b7bd48677e18ffde734f 218 Gene3D G3DSA:3.40.50.2300 1 120 3.4E-28 T 10-10-2018 VF_A0561 f894924646d5b7bd48677e18ffde734f 218 SUPERFAMILY SSF52172 3 117 4.41E-29 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0561 f894924646d5b7bd48677e18ffde734f 218 SMART SM00448 3 111 4.3E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0561 f894924646d5b7bd48677e18ffde734f 218 SMART SM00862 145 216 3.1E-25 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0561 f894924646d5b7bd48677e18ffde734f 218 Pfam PF00072 Response regulator receiver domain 5 111 3.9E-17 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0561 f894924646d5b7bd48677e18ffde734f 218 Gene3D G3DSA:1.10.10.10 122 218 1.8E-30 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0780 c1e662b4264dcee033b68c3ee017953b 145 SUPERFAMILY SSF52833 25 99 4.99E-6 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_0780 c1e662b4264dcee033b68c3ee017953b 145 Pfam PF04214 Protein of unknown function, DUF 50 118 4.1E-32 T 10-10-2018 IPR007332 Protein of unknown function DUF411 VF_0746 f1c3a59384c456dce743817a1a6afc7b 269 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 9 177 24.883 T 10-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 VF_0746 f1c3a59384c456dce743817a1a6afc7b 269 Pfam PF05036 Sporulation related domain 194 264 6.1E-14 T 10-10-2018 IPR007730 Sporulation-like domain GO:0042834 VF_0746 f1c3a59384c456dce743817a1a6afc7b 269 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 87 182 1.3E-44 T 10-10-2018 IPR012997 Rare lipoprotein A VF_0746 f1c3a59384c456dce743817a1a6afc7b 269 SUPERFAMILY SSF50685 86 177 4.53E-11 T 10-10-2018 IPR036908 RlpA-like domain superfamily VF_0746 f1c3a59384c456dce743817a1a6afc7b 269 Gene3D G3DSA:3.30.70.1070 195 266 3.8E-10 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VF_0746 f1c3a59384c456dce743817a1a6afc7b 269 Pfam PF03330 Lytic transglycolase 85 174 7.1E-26 T 10-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain VF_0746 f1c3a59384c456dce743817a1a6afc7b 269 SUPERFAMILY SSF110997 193 264 4.45E-14 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VF_0746 f1c3a59384c456dce743817a1a6afc7b 269 Gene3D G3DSA:2.40.40.10 84 178 2.5E-37 T 10-10-2018 IPR036908 RlpA-like domain superfamily VF_A1069 a3b7232f672f4e7f4ee0ea6d8e35d6dd 531 SUPERFAMILY SSF58104 220 529 1.83E-65 T 10-10-2018 VF_A1069 a3b7232f672f4e7f4ee0ea6d8e35d6dd 531 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 1.3E-20 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A1069 a3b7232f672f4e7f4ee0ea6d8e35d6dd 531 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 25 1.3E-20 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A1069 a3b7232f672f4e7f4ee0ea6d8e35d6dd 531 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 1.3E-20 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A1069 a3b7232f672f4e7f4ee0ea6d8e35d6dd 531 SMART SM00304 200 252 6.5E-4 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A1069 a3b7232f672f4e7f4ee0ea6d8e35d6dd 531 Gene3D G3DSA:1.10.287.950 200 530 9.3E-65 T 10-10-2018 VF_A1069 a3b7232f672f4e7f4ee0ea6d8e35d6dd 531 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 342 494 3.2E-38 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A1069 a3b7232f672f4e7f4ee0ea6d8e35d6dd 531 SMART SM00283 267 528 6.3E-47 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0637 105fa4a03f57bee0a38e3bbb243714ba 487 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 83.827 T 10-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 VF_0637 105fa4a03f57bee0a38e3bbb243714ba 487 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 2.5E-161 T 10-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 VF_0637 105fa4a03f57bee0a38e3bbb243714ba 487 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 10-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 VF_0637 105fa4a03f57bee0a38e3bbb243714ba 487 SMART SM00116 158 206 1.2E-5 T 10-10-2018 IPR000644 CBS domain VF_0637 105fa4a03f57bee0a38e3bbb243714ba 487 SMART SM00116 96 144 3.6E-11 T 10-10-2018 IPR000644 CBS domain VF_0637 105fa4a03f57bee0a38e3bbb243714ba 487 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 3.6E-195 T 10-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 VF_0637 105fa4a03f57bee0a38e3bbb243714ba 487 PIRSF PIRSF000130 1 487 1.4E-199 T 10-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 VF_0637 105fa4a03f57bee0a38e3bbb243714ba 487 SUPERFAMILY SSF51412 1 477 4.71E-124 T 10-10-2018 VF_0637 105fa4a03f57bee0a38e3bbb243714ba 487 Pfam PF00571 CBS domain 153 201 8.0E-4 T 10-10-2018 IPR000644 CBS domain VF_0637 105fa4a03f57bee0a38e3bbb243714ba 487 Pfam PF00571 CBS domain 97 140 2.5E-9 T 10-10-2018 IPR000644 CBS domain VF_0637 105fa4a03f57bee0a38e3bbb243714ba 487 Gene3D G3DSA:3.20.20.70 1 486 2.0E-209 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0637 105fa4a03f57bee0a38e3bbb243714ba 487 SMART SM01240 7 473 0.0 T 10-10-2018 VF_0637 105fa4a03f57bee0a38e3bbb243714ba 487 SUPERFAMILY SSF54631 96 203 5.31E-24 T 10-10-2018 VF_0479 597186f629aec0e1ac77591105c16a75 657 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 611 36.66 T 10-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 VF_0479 597186f629aec0e1ac77591105c16a75 657 SMART SM00382 185 324 7.8E-26 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0479 597186f629aec0e1ac77591105c16a75 657 ProSitePatterns PS00674 AAA-protein family signature. 292 310 - T 10-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 VF_0479 597186f629aec0e1ac77591105c16a75 657 Gene3D G3DSA:2.40.50.920 24 101 1.7E-29 T 10-10-2018 VF_0479 597186f629aec0e1ac77591105c16a75 657 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 189 321 5.5E-46 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VF_0479 597186f629aec0e1ac77591105c16a75 657 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 102 595 3.9E-237 T 10-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 VF_0479 597186f629aec0e1ac77591105c16a75 657 Pfam PF06480 FtsH Extracellular 5 87 1.9E-11 T 10-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 VF_0479 597186f629aec0e1ac77591105c16a75 657 Gene3D G3DSA:1.10.8.60 324 397 1.3E-25 T 10-10-2018 VF_0479 597186f629aec0e1ac77591105c16a75 657 SUPERFAMILY SSF52540 143 392 6.96E-70 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0479 597186f629aec0e1ac77591105c16a75 657 Gene3D G3DSA:1.20.58.760 398 603 1.3E-70 T 10-10-2018 VF_0479 597186f629aec0e1ac77591105c16a75 657 Pfam PF01434 Peptidase family M41 383 593 1.8E-78 T 10-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 VF_0479 597186f629aec0e1ac77591105c16a75 657 SUPERFAMILY SSF140990 403 597 9.68E-72 T 10-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 VF_0479 597186f629aec0e1ac77591105c16a75 657 Gene3D G3DSA:3.40.50.300 137 323 1.9E-70 T 10-10-2018 VF_2382 3a99286f25e75915e4524215bd4c0d19 213 Gene3D G3DSA:3.30.420.10 24 200 5.3E-33 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_2382 3a99286f25e75915e4524215bd4c0d19 213 SMART SM00479 29 202 3.5E-24 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_2382 3a99286f25e75915e4524215bd4c0d19 213 SUPERFAMILY SSF53098 26 197 1.75E-35 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_2382 3a99286f25e75915e4524215bd4c0d19 213 Pfam PF00929 Exonuclease 31 193 1.5E-22 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_B0045 b933cda48cc7f552b70d1d539562f9f4 116 PIRSF PIRSF002070 3 111 6.4E-23 T 10-10-2018 VF_B0045 b933cda48cc7f552b70d1d539562f9f4 116 Pfam PF00436 Single-strand binding protein family 7 106 2.0E-27 T 10-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 VF_B0045 b933cda48cc7f552b70d1d539562f9f4 116 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 4 108 8.9E-31 T 10-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 VF_B0045 b933cda48cc7f552b70d1d539562f9f4 116 Gene3D G3DSA:2.40.50.140 2 115 3.9E-31 T 10-10-2018 VF_B0045 b933cda48cc7f552b70d1d539562f9f4 116 SUPERFAMILY SSF50249 6 107 7.2E-30 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_B0045 b933cda48cc7f552b70d1d539562f9f4 116 Hamap MF_00984 Single-stranded DNA-binding protein. 7 109 22.85 T 10-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 VF_1015 27715b9df5f03829008ab442081af4bb 357 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 6 151 2.0E-28 T 10-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 VF_1015 27715b9df5f03829008ab442081af4bb 357 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 6 147 1.6E-47 T 10-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 VF_1015 27715b9df5f03829008ab442081af4bb 357 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 321 333 - T 10-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 VF_1015 27715b9df5f03829008ab442081af4bb 357 SUPERFAMILY SSF54211 254 344 4.05E-31 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_1015 27715b9df5f03829008ab442081af4bb 357 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 228 241 - T 10-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 VF_1015 27715b9df5f03829008ab442081af4bb 357 Pfam PF08645 Polynucleotide kinase 3 phosphatase 6 132 1.0E-5 T 10-10-2018 IPR013954 Polynucleotide kinase 3 phosphatase Reactome: R-HSA-5649702 VF_1015 27715b9df5f03829008ab442081af4bb 357 Gene3D G3DSA:3.30.230.40 257 357 8.3E-37 T 10-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 VF_1015 27715b9df5f03829008ab442081af4bb 357 SUPERFAMILY SSF54211 169 253 2.53E-32 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_1015 27715b9df5f03829008ab442081af4bb 357 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 198 339 6.5E-66 T 10-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 VF_1015 27715b9df5f03829008ab442081af4bb 357 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 5 164 5.0E-78 T 10-10-2018 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 VF_1015 27715b9df5f03829008ab442081af4bb 357 Gene3D G3DSA:3.30.230.40 166 256 3.4E-36 T 10-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 VF_1015 27715b9df5f03829008ab442081af4bb 357 Gene3D G3DSA:3.40.50.1000 1 165 4.7E-47 T 10-10-2018 IPR023214 HAD superfamily VF_1015 27715b9df5f03829008ab442081af4bb 357 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 169 357 38.151 T 10-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 VF_1015 27715b9df5f03829008ab442081af4bb 357 SUPERFAMILY SSF56784 3 158 1.52E-38 T 10-10-2018 IPR036412 HAD-like superfamily VF_1015 27715b9df5f03829008ab442081af4bb 357 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 4 357 51.484 T 10-10-2018 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 VF_1547 34a61e829bf362f60686db54744a575f 236 Gene3D G3DSA:3.40.50.1860 106 215 9.1E-83 T 10-10-2018 VF_1547 34a61e829bf362f60686db54744a575f 236 SUPERFAMILY SSF53681 3 113 3.27E-33 T 10-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_1547 34a61e829bf362f60686db54744a575f 236 SUPERFAMILY SSF53681 118 228 3.27E-26 T 10-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_1547 34a61e829bf362f60686db54744a575f 236 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 230 1.1E-58 T 10-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 VF_1547 34a61e829bf362f60686db54744a575f 236 Pfam PF01177 Asp/Glu/Hydantoin racemase 8 223 6.3E-64 T 10-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_1547 34a61e829bf362f60686db54744a575f 236 Gene3D G3DSA:3.40.50.1860 5 221 9.1E-83 T 10-10-2018 VF_2508 40feece0e907e3c82038a4422d6d14a8 367 Pfam PF03841 L-seryl-tRNA selenium transferase 104 277 6.4E-12 T 10-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 VF_2508 40feece0e907e3c82038a4422d6d14a8 367 Gene3D G3DSA:3.40.640.10 23 276 1.1E-50 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_2508 40feece0e907e3c82038a4422d6d14a8 367 SUPERFAMILY SSF53383 8 360 5.44E-34 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_2508 40feece0e907e3c82038a4422d6d14a8 367 TIGRFAM TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme 4 366 1.4E-184 T 10-10-2018 IPR006337 Pyridoxal phosphate-dependent enzyme, SelA-like KEGG: 00030+4.3.1.29|MetaCyc: PWY-7310 VF_1599 1e8f663395448a9b18dc9567377c0b5c 192 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 173 186 - T 10-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 VF_1599 1e8f663395448a9b18dc9567377c0b5c 192 Gene3D G3DSA:3.40.50.300 2 140 1.2E-24 T 10-10-2018 VF_1599 1e8f663395448a9b18dc9567377c0b5c 192 SUPERFAMILY SSF52540 2 141 7.55E-43 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1599 1e8f663395448a9b18dc9567377c0b5c 192 PIRSF PIRSF035805 1 192 4.6E-57 T 10-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 VF_1599 1e8f663395448a9b18dc9567377c0b5c 192 Hamap MF_00124 Thymidine kinase [tdk]. 1 189 34.898 T 10-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 VF_1599 1e8f663395448a9b18dc9567377c0b5c 192 SUPERFAMILY SSF57716 142 190 1.05E-16 T 10-10-2018 VF_1599 1e8f663395448a9b18dc9567377c0b5c 192 Pfam PF00265 Thymidine kinase 2 186 8.1E-60 T 10-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 VF_1599 1e8f663395448a9b18dc9567377c0b5c 192 Gene3D G3DSA:3.30.60.20 144 189 5.9E-8 T 10-10-2018 VF_1010 f45616171d473d5ab8ea417558ead2eb 368 SUPERFAMILY SSF56935 71 367 1.47E-21 T 10-10-2018 VF_1010 f45616171d473d5ab8ea417558ead2eb 368 Gene3D G3DSA:2.40.160.10 109 367 3.0E-9 T 10-10-2018 IPR023614 Porin domain superfamily VF_1010 f45616171d473d5ab8ea417558ead2eb 368 Pfam PF13609 Gram-negative porin 38 348 2.0E-16 T 10-10-2018 VF_A0087 ae710017c2b19f9efb80c88d9485a9e5 355 Gene3D G3DSA:3.60.15.10 60 350 2.2E-78 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VF_A0087 ae710017c2b19f9efb80c88d9485a9e5 355 SUPERFAMILY SSF56281 93 319 1.44E-33 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VF_A0087 ae710017c2b19f9efb80c88d9485a9e5 355 Pfam PF12706 Beta-lactamase superfamily domain 109 302 4.2E-40 T 10-10-2018 IPR001279 Metallo-beta-lactamase VF_0543 1679ec1ef7ba667a87e884ff937492f8 521 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 8 515 8.7E-208 T 10-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VF_0543 1679ec1ef7ba667a87e884ff937492f8 521 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 521 216.461 T 10-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VF_0543 1679ec1ef7ba667a87e884ff937492f8 521 Gene3D G3DSA:3.30.590.20 17 521 1.3E-192 T 10-10-2018 VF_0543 1679ec1ef7ba667a87e884ff937492f8 521 Pfam PF04262 Glutamate-cysteine ligase 13 378 1.6E-166 T 10-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VF_0543 1679ec1ef7ba667a87e884ff937492f8 521 SUPERFAMILY SSF55931 4 513 6.15E-199 T 10-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 VF_0904 edab27d03094894dca2ae976336cb3ce 163 SMART SM00344 11 120 8.6E-53 T 10-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VF_0904 edab27d03094894dca2ae976336cb3ce 163 SUPERFAMILY SSF46785 11 69 2.91E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0904 edab27d03094894dca2ae976336cb3ce 163 Gene3D G3DSA:1.10.10.10 1 62 3.0E-31 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0904 edab27d03094894dca2ae976336cb3ce 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 11 27 9.0E-23 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VF_0904 edab27d03094894dca2ae976336cb3ce 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 38 57 9.0E-23 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VF_0904 edab27d03094894dca2ae976336cb3ce 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 27 38 9.0E-23 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VF_0904 edab27d03094894dca2ae976336cb3ce 163 Pfam PF01037 Lrp/AsnC ligand binding domain 77 151 3.0E-23 T 10-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VF_0904 edab27d03094894dca2ae976336cb3ce 163 Gene3D G3DSA:3.30.70.920 63 158 8.1E-24 T 10-10-2018 VF_0904 edab27d03094894dca2ae976336cb3ce 163 SUPERFAMILY SSF54909 73 157 2.68E-21 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel VF_0904 edab27d03094894dca2ae976336cb3ce 163 Pfam PF13412 Winged helix-turn-helix DNA-binding 11 57 1.5E-21 T 10-10-2018 VF_0904 edab27d03094894dca2ae976336cb3ce 163 ProSitePatterns PS00519 AsnC-type HTH domain signature. 29 55 - T 10-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VF_2009 e6e735b53f817a61d13d021a8932f296 173 Pfam PF05069 Phage virion morphogenesis family 7 166 7.5E-12 T 10-10-2018 IPR006522 Phage virion morphogensis protein VF_0264 043a6dbaf1a171fffbd4b3b1ba1fef3d 336 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 5 333 42.779 T 10-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VF_0264 043a6dbaf1a171fffbd4b3b1ba1fef3d 336 Gene3D G3DSA:3.30.540.10 4 198 2.7E-76 T 10-10-2018 VF_0264 043a6dbaf1a171fffbd4b3b1ba1fef3d 336 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 6 197 7.8E-77 T 10-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VF_0264 043a6dbaf1a171fffbd4b3b1ba1fef3d 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 151 174 2.5E-75 T 10-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VF_0264 043a6dbaf1a171fffbd4b3b1ba1fef3d 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 208 235 2.5E-75 T 10-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VF_0264 043a6dbaf1a171fffbd4b3b1ba1fef3d 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 307 332 2.5E-75 T 10-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VF_0264 043a6dbaf1a171fffbd4b3b1ba1fef3d 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 182 205 2.5E-75 T 10-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VF_0264 043a6dbaf1a171fffbd4b3b1ba1fef3d 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 30 57 2.5E-75 T 10-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VF_0264 043a6dbaf1a171fffbd4b3b1ba1fef3d 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 67 93 2.5E-75 T 10-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VF_0264 043a6dbaf1a171fffbd4b3b1ba1fef3d 336 Gene3D G3DSA:3.40.190.80 200 336 3.5E-59 T 10-10-2018 VF_0264 043a6dbaf1a171fffbd4b3b1ba1fef3d 336 PIRSF PIRSF000904 1 336 1.2E-124 T 10-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VF_0264 043a6dbaf1a171fffbd4b3b1ba1fef3d 336 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 273 285 - T 10-10-2018 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VF_0264 043a6dbaf1a171fffbd4b3b1ba1fef3d 336 PIRSF PIRSF500210 1 335 1.2E-127 T 10-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VF_0264 043a6dbaf1a171fffbd4b3b1ba1fef3d 336 SUPERFAMILY SSF56655 3 330 9.87E-114 T 10-10-2018 VF_2238 0cd145945c5041f5ade16c43bb3d7a6a 505 Gene3D G3DSA:2.40.320.10 1 200 1.8E-34 T 10-10-2018 VF_2238 0cd145945c5041f5ade16c43bb3d7a6a 505 SMART SM01118 2 203 4.8E-41 T 10-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 VF_2238 0cd145945c5041f5ade16c43bb3d7a6a 505 SMART SM00880 229 498 4.6E-24 T 10-10-2018 IPR007899 CHAD domain VF_2238 0cd145945c5041f5ade16c43bb3d7a6a 505 Pfam PF01928 CYTH domain 3 197 1.6E-31 T 10-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 VF_2238 0cd145945c5041f5ade16c43bb3d7a6a 505 Gene3D G3DSA:1.40.20.10 211 404 8.0E-11 T 10-10-2018 IPR038186 CHAD domain superfamily VF_2238 0cd145945c5041f5ade16c43bb3d7a6a 505 SUPERFAMILY SSF55154 1 219 2.62E-48 T 10-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 VF_A0021 fc3038a5dcf1f61a6360f24d56e7f8fe 504 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 25 473 3.2E-40 T 10-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 VF_A0021 fc3038a5dcf1f61a6360f24d56e7f8fe 504 SUPERFAMILY SSF103473 14 196 1.83E-19 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0021 fc3038a5dcf1f61a6360f24d56e7f8fe 504 Pfam PF00854 POT family 77 438 1.1E-21 T 10-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 VF_A0021 fc3038a5dcf1f61a6360f24d56e7f8fe 504 Gene3D G3DSA:1.20.1250.20 3 483 1.7E-65 T 10-10-2018 VF_1597 98dc63853896de67890e590f64545c27 554 Gene3D G3DSA:3.40.190.10 53 535 2.1E-190 T 10-10-2018 VF_1597 98dc63853896de67890e590f64545c27 554 PIRSF PIRSF002741 3 554 2.3E-112 T 10-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VF_1597 98dc63853896de67890e590f64545c27 554 Gene3D G3DSA:3.90.76.10 83 206 2.1E-190 T 10-10-2018 VF_1597 98dc63853896de67890e590f64545c27 554 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 95 473 2.5E-89 T 10-10-2018 IPR000914 Solute-binding protein family 5 domain VF_1597 98dc63853896de67890e590f64545c27 554 Gene3D G3DSA:3.10.105.10 308 523 2.1E-190 T 10-10-2018 VF_1597 98dc63853896de67890e590f64545c27 554 SUPERFAMILY SSF53850 51 540 3.44E-143 T 10-10-2018 VF_0501 4b311c8ea61faa2929db5924b0ca4978 258 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 5 257 2.0E-63 T 10-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 VF_0501 4b311c8ea61faa2929db5924b0ca4978 258 PIRSF PIRSF005902 1 258 3.5E-69 T 10-10-2018 IPR001130 TatD family GO:0016788 VF_0501 4b311c8ea61faa2929db5924b0ca4978 258 Pfam PF01026 TatD related DNase 6 256 9.9E-69 T 10-10-2018 IPR001130 TatD family GO:0016788 VF_0501 4b311c8ea61faa2929db5924b0ca4978 258 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 193 209 - T 10-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 VF_0501 4b311c8ea61faa2929db5924b0ca4978 258 Gene3D G3DSA:3.20.20.140 1 258 1.1E-84 T 10-10-2018 VF_0501 4b311c8ea61faa2929db5924b0ca4978 258 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 5 13 - T 10-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 VF_0501 4b311c8ea61faa2929db5924b0ca4978 258 SUPERFAMILY SSF51556 5 258 4.34E-76 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_A0890 c159a06e50960083b3f1026b4379cbc1 203 Gene3D G3DSA:3.40.30.10 32 201 8.5E-31 T 10-10-2018 VF_A0890 c159a06e50960083b3f1026b4379cbc1 203 Pfam PF08534 Redoxin 53 194 2.0E-19 T 10-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 VF_A0890 c159a06e50960083b3f1026b4379cbc1 203 SUPERFAMILY SSF52833 44 195 9.91E-26 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_A0238 42850b572223b97ae253bfe877ae6571 255 SUPERFAMILY SSF100950 73 234 2.16E-30 T 10-10-2018 IPR037171 NagB/RpiA transferase-like VF_A0238 42850b572223b97ae253bfe877ae6571 255 Pfam PF00455 DeoR C terminal sensor domain 75 233 1.3E-53 T 10-10-2018 IPR014036 DeoR C-terminal sensor domain VF_A0238 42850b572223b97ae253bfe877ae6571 255 Gene3D G3DSA:3.30.750.70 69 135 1.3E-9 T 10-10-2018 VF_A0238 42850b572223b97ae253bfe877ae6571 255 Gene3D G3DSA:1.10.10.10 1 58 1.5E-8 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0238 42850b572223b97ae253bfe877ae6571 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 5.2E-12 T 10-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VF_A0238 42850b572223b97ae253bfe877ae6571 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 5.2E-12 T 10-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VF_A0238 42850b572223b97ae253bfe877ae6571 255 SUPERFAMILY SSF46785 5 77 6.83E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0238 42850b572223b97ae253bfe877ae6571 255 SMART SM01134 72 234 3.5E-70 T 10-10-2018 VF_A0238 42850b572223b97ae253bfe877ae6571 255 SMART SM00420 6 58 5.1E-27 T 10-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VF_A0238 42850b572223b97ae253bfe877ae6571 255 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 10-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 VF_A0238 42850b572223b97ae253bfe877ae6571 255 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 4.6E-24 T 10-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VF_2460 da4a5985502fe3b720cb5932c3ecf714 693 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 29 664 7.1E-238 T 10-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 VF_2460 da4a5985502fe3b720cb5932c3ecf714 693 Gene3D G3DSA:3.40.50.300 208 450 9.3E-85 T 10-10-2018 VF_2460 da4a5985502fe3b720cb5932c3ecf714 693 SUPERFAMILY SSF50249 9 174 6.0E-39 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_2460 da4a5985502fe3b720cb5932c3ecf714 693 SMART SM00487 265 459 4.2E-35 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_2460 da4a5985502fe3b720cb5932c3ecf714 693 SMART SM00490 505 589 3.6E-21 T 10-10-2018 IPR001650 Helicase, C-terminal VF_2460 da4a5985502fe3b720cb5932c3ecf714 693 SUPERFAMILY SSF52540 292 653 2.44E-44 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2460 da4a5985502fe3b720cb5932c3ecf714 693 Pfam PF17191 RecG wedge domain 15 171 1.3E-19 T 10-10-2018 IPR033454 RecG, wedge domain VF_2460 da4a5985502fe3b720cb5932c3ecf714 693 Gene3D G3DSA:3.40.50.300 457 630 9.3E-52 T 10-10-2018 VF_2460 da4a5985502fe3b720cb5932c3ecf714 693 Pfam PF00271 Helicase conserved C-terminal domain 481 588 2.5E-17 T 10-10-2018 IPR001650 Helicase, C-terminal VF_2460 da4a5985502fe3b720cb5932c3ecf714 693 Pfam PF00270 DEAD/DEAH box helicase 272 431 4.7E-19 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_2460 da4a5985502fe3b720cb5932c3ecf714 693 Gene3D G3DSA:2.40.50.140 47 137 3.3E-11 T 10-10-2018 VF_2460 da4a5985502fe3b720cb5932c3ecf714 693 SUPERFAMILY SSF52540 194 453 3.04E-60 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0289 439d3009788d8db3023a42345af7000c 786 Pfam PF03968 OstA-like protein 67 198 3.4E-23 T 10-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal VF_0289 439d3009788d8db3023a42345af7000c 786 Gene3D G3DSA:2.60.450.10 59 145 3.5E-8 T 10-10-2018 VF_0289 439d3009788d8db3023a42345af7000c 786 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 3 763 20.472 T 10-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 VF_0289 439d3009788d8db3023a42345af7000c 786 Pfam PF04453 Organic solvent tolerance protein 306 693 4.3E-110 T 10-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 VF_A0737 fe91de0d33e81962ca0865222ff34b49 227 SMART SM00382 30 219 2.7E-14 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0737 fe91de0d33e81962ca0865222ff34b49 227 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0737 fe91de0d33e81962ca0865222ff34b49 227 Gene3D G3DSA:3.40.50.300 1 224 1.2E-60 T 10-10-2018 VF_A0737 fe91de0d33e81962ca0865222ff34b49 227 SUPERFAMILY SSF52540 1 220 3.46E-66 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0737 fe91de0d33e81962ca0865222ff34b49 227 Pfam PF00005 ABC transporter 21 169 7.7E-31 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0612 ab77b42c6a4c921716c96c151c5d7ae3 104 Pfam PF04287 tRNA pseudouridine synthase C 7 102 2.8E-31 T 10-10-2018 IPR023376 YqcC-like domain VF_0612 ab77b42c6a4c921716c96c151c5d7ae3 104 SUPERFAMILY SSF158452 1 102 3.53E-34 T 10-10-2018 IPR036814 YqcC-like superfamily VF_0612 ab77b42c6a4c921716c96c151c5d7ae3 104 Gene3D G3DSA:1.20.1440.40 1 103 8.0E-30 T 10-10-2018 IPR036814 YqcC-like superfamily VF_0612 ab77b42c6a4c921716c96c151c5d7ae3 104 PIRSF PIRSF006257 1 104 8.1E-35 T 10-10-2018 IPR007384 Protein of unknown function UCP006257 VF_1421 8e8e5fc0e841cad09e46e74963a140d2 565 SUPERFAMILY SSF48452 355 450 6.13E-5 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1421 8e8e5fc0e841cad09e46e74963a140d2 565 SUPERFAMILY SSF53300 99 271 4.45E-17 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_1421 8e8e5fc0e841cad09e46e74963a140d2 565 SMART SM00327 99 277 3.1E-6 T 10-10-2018 IPR002035 von Willebrand factor, type A VF_1421 8e8e5fc0e841cad09e46e74963a140d2 565 Pfam PF13519 von Willebrand factor type A domain 102 207 1.6E-14 T 10-10-2018 IPR002035 von Willebrand factor, type A VF_1421 8e8e5fc0e841cad09e46e74963a140d2 565 Gene3D G3DSA:3.40.50.410 97 282 2.5E-26 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_1687 b7eef952e63ba5c8561059bd106cb121 708 Gene3D G3DSA:3.40.50.300 13 177 4.4E-102 T 10-10-2018 VF_1687 b7eef952e63ba5c8561059bd106cb121 708 Gene3D G3DSA:1.10.8.60 8 240 4.4E-102 T 10-10-2018 VF_1687 b7eef952e63ba5c8561059bd106cb121 708 Gene3D G3DSA:3.30.300.150 565 690 1.2E-38 T 10-10-2018 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1687 b7eef952e63ba5c8561059bd106cb121 708 Pfam PF12168 DNA polymerase III subunits tau domain IV DnaB-binding 489 565 2.2E-20 T 10-10-2018 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1687 b7eef952e63ba5c8561059bd106cb121 708 SUPERFAMILY SSF48019 243 362 3.91E-32 T 10-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 VF_1687 b7eef952e63ba5c8561059bd106cb121 708 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 567 705 6.6E-47 T 10-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1687 b7eef952e63ba5c8561059bd106cb121 708 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 355 3.1E-135 T 10-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 VF_1687 b7eef952e63ba5c8561059bd106cb121 708 SMART SM00382 37 179 8.0E-7 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1687 b7eef952e63ba5c8561059bd106cb121 708 SUPERFAMILY SSF52540 34 222 1.05E-56 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1687 b7eef952e63ba5c8561059bd106cb121 708 Pfam PF13177 DNA polymerase III, delta subunit 20 178 3.5E-44 T 10-10-2018 VF_1687 b7eef952e63ba5c8561059bd106cb121 708 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 360 2.6E-31 T 10-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 VF_1687 b7eef952e63ba5c8561059bd106cb121 708 Gene3D G3DSA:1.20.272.10 242 361 6.3E-40 T 10-10-2018 VF_0771 1b36498358d7e0b728803b01e3a77b4c 270 Gene3D G3DSA:1.25.40.10 175 266 4.5E-6 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0771 1b36498358d7e0b728803b01e3a77b4c 270 SUPERFAMILY SSF48452 190 265 5.38E-8 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0771 1b36498358d7e0b728803b01e3a77b4c 270 Pfam PF13371 Tetratricopeptide repeat 187 259 3.2E-20 T 10-10-2018 VF_0771 1b36498358d7e0b728803b01e3a77b4c 270 Pfam PF13369 Transglutaminase-like superfamily 33 184 1.0E-39 T 10-10-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 VF_2008 bfc59c6b3d89aeac4406327042a61d5a 377 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 91 254 1.9E-14 T 10-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain VF_2008 bfc59c6b3d89aeac4406327042a61d5a 377 Pfam PF17482 Phage tail sheath C-terminal domain 263 375 1.4E-11 T 10-10-2018 IPR020287 Tail sheath protein, C-terminal domain VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 Hamap MF_01314 Anaerobic nitric oxide reductase transcription regulator NorR [norR]. 1 511 62.221 T 10-10-2018 IPR023944 Anaerobic nitric oxide reductase transcription regulator GO:0003700|GO:0006355 VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 SUPERFAMILY SSF46689 462 510 9.86E-5 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 Gene3D G3DSA:1.10.10.60 456 512 3.5E-8 T 10-10-2018 VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 Gene3D G3DSA:3.30.450.40 8 171 5.6E-16 T 10-10-2018 IPR029016 GAF-like domain superfamily VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 SMART SM00065 20 168 1.3E-9 T 10-10-2018 IPR003018 GAF domain GO:0005515 VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 403 412 - T 10-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 SUPERFAMILY SSF52540 189 424 1.61E-65 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 214 227 - T 10-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 Pfam PF01590 GAF domain 24 155 6.0E-8 T 10-10-2018 IPR003018 GAF domain GO:0005515 VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 Gene3D G3DSA:3.40.50.300 176 360 2.6E-63 T 10-10-2018 VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 Gene3D G3DSA:1.10.8.60 361 425 7.1E-20 T 10-10-2018 VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 SMART SM00382 210 353 5.4E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 276 291 - T 10-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 SUPERFAMILY SSF55781 9 166 2.84E-16 T 10-10-2018 VF_1783 58d79bb6ffc15f61f7152678ced0da1b 512 Pfam PF00158 Sigma-54 interaction domain 190 356 6.5E-68 T 10-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VF_1849 9c01cb8d3bf8429df2443c10512d7150 439 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 24 434 4.0E-194 T 10-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_1849 9c01cb8d3bf8429df2443c10512d7150 439 SUPERFAMILY SSF52540 93 362 1.01E-95 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1849 9c01cb8d3bf8429df2443c10512d7150 439 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 348 357 - T 10-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_1849 9c01cb8d3bf8429df2443c10512d7150 439 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 146 357 1.1E-73 T 10-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_1849 9c01cb8d3bf8429df2443c10512d7150 439 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 21 437 1.1E-174 T 10-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_1849 9c01cb8d3bf8429df2443c10512d7150 439 Gene3D G3DSA:3.40.50.12240 16 439 9.7E-157 T 10-10-2018 VF_1849 9c01cb8d3bf8429df2443c10512d7150 439 SMART SM00382 158 342 9.7E-6 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0623 ae1afd74598e340723d7fb50e37c2299 66 SUPERFAMILY SSF140319 2 65 1.16E-27 T 10-10-2018 IPR036762 IscX-like superfamily VF_0623 ae1afd74598e340723d7fb50e37c2299 66 PIRSF PIRSF039003 3 66 3.0E-33 T 10-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 VF_0623 ae1afd74598e340723d7fb50e37c2299 66 Pfam PF04384 Iron-sulphur cluster assembly 3 66 8.9E-32 T 10-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 VF_0623 ae1afd74598e340723d7fb50e37c2299 66 Gene3D G3DSA:1.10.10.600 1 66 1.7E-28 T 10-10-2018 IPR036762 IscX-like superfamily VF_0623 ae1afd74598e340723d7fb50e37c2299 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 65 8.2E-34 T 10-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 VF_2277 f12e2857ec13fab365fe24637f518c06 193 Pfam PF00227 Proteasome subunit 21 189 3.9E-23 T 10-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 VF_2277 f12e2857ec13fab365fe24637f518c06 193 SUPERFAMILY SSF56235 20 191 8.35E-57 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_2277 f12e2857ec13fab365fe24637f518c06 193 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 20 191 38.011 T 10-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 VF_2277 f12e2857ec13fab365fe24637f518c06 193 Gene3D G3DSA:3.60.20.10 18 192 3.0E-64 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_2277 f12e2857ec13fab365fe24637f518c06 193 PIRSF PIRSF039093 14 193 7.2E-78 T 10-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 VF_2277 f12e2857ec13fab365fe24637f518c06 193 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 21 191 1.8E-79 T 10-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 VF_A0029 266c91d04199322de56a38888cedf771 295 SUPERFAMILY SSF46689 244 294 2.96E-12 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0029 266c91d04199322de56a38888cedf771 295 Pfam PF12833 Helix-turn-helix domain 214 293 8.4E-24 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0029 266c91d04199322de56a38888cedf771 295 SMART SM00342 208 291 1.0E-25 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0029 266c91d04199322de56a38888cedf771 295 SUPERFAMILY SSF46689 191 242 7.48E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0029 266c91d04199322de56a38888cedf771 295 Gene3D G3DSA:1.10.10.60 242 295 1.2E-16 T 10-10-2018 VF_A0029 266c91d04199322de56a38888cedf771 295 Gene3D G3DSA:1.10.10.60 190 241 2.5E-13 T 10-10-2018 VF_1236 a4f13445f9429361e945becc73b1d38f 795 SMART SM00896 701 794 5.3E-44 T 10-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 VF_1236 a4f13445f9429361e945becc73b1d38f 795 SUPERFAMILY SSF50249 37 197 1.64E-47 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1236 a4f13445f9429361e945becc73b1d38f 795 Pfam PF01588 Putative tRNA binding domain 45 145 7.5E-27 T 10-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 VF_1236 a4f13445f9429361e945becc73b1d38f 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 3.7E-279 T 10-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 VF_1236 a4f13445f9429361e945becc73b1d38f 795 Gene3D G3DSA:2.40.50.140 39 154 1.2E-68 T 10-10-2018 VF_1236 a4f13445f9429361e945becc73b1d38f 795 Gene3D G3DSA:3.50.40.10 197 395 7.0E-84 T 10-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 VF_1236 a4f13445f9429361e945becc73b1d38f 795 Gene3D G3DSA:3.30.56.10 7 179 1.2E-68 T 10-10-2018 VF_1236 a4f13445f9429361e945becc73b1d38f 795 SUPERFAMILY SSF56037 197 394 1.12E-76 T 10-10-2018 VF_1236 a4f13445f9429361e945becc73b1d38f 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 46.152 T 10-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 VF_1236 a4f13445f9429361e945becc73b1d38f 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 9.9E-27 T 10-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 VF_1236 a4f13445f9429361e945becc73b1d38f 795 Pfam PF03484 tRNA synthetase B5 domain 406 471 3.7E-19 T 10-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 VF_1236 a4f13445f9429361e945becc73b1d38f 795 Gene3D G3DSA:3.30.930.10 485 691 4.5E-62 T 10-10-2018 VF_1236 a4f13445f9429361e945becc73b1d38f 795 Gene3D G3DSA:3.30.56.10 401 475 5.9E-26 T 10-10-2018 VF_1236 a4f13445f9429361e945becc73b1d38f 795 Pfam PF03483 B3/4 domain 212 385 8.2E-72 T 10-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 VF_1236 a4f13445f9429361e945becc73b1d38f 795 SUPERFAMILY SSF46955 404 475 1.28E-19 T 10-10-2018 IPR009061 Putative DNA-binding domain superfamily VF_1236 a4f13445f9429361e945becc73b1d38f 795 Gene3D G3DSA:3.30.70.380 702 795 1.8E-28 T 10-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 VF_1236 a4f13445f9429361e945becc73b1d38f 795 SMART SM00873 212 385 2.3E-98 T 10-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 VF_1236 a4f13445f9429361e945becc73b1d38f 795 SUPERFAMILY SSF55681 467 689 4.03E-55 T 10-10-2018 VF_1236 a4f13445f9429361e945becc73b1d38f 795 SUPERFAMILY SSF54991 697 794 2.22E-28 T 10-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 VF_1236 a4f13445f9429361e945becc73b1d38f 795 SMART SM00874 403 471 6.3E-28 T 10-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 VF_0762 65ac792b7fb827308ea830163c7526f3 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 4.4E-170 T 10-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 VF_0762 65ac792b7fb827308ea830163c7526f3 363 Gene3D G3DSA:3.40.50.300 4 278 3.0E-151 T 10-10-2018 VF_0762 65ac792b7fb827308ea830163c7526f3 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 45.325 T 10-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 VF_0762 65ac792b7fb827308ea830163c7526f3 363 PIRSF PIRSF006641 1 363 8.4E-158 T 10-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 VF_0762 65ac792b7fb827308ea830163c7526f3 363 SUPERFAMILY SSF52540 3 301 5.87E-85 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0762 65ac792b7fb827308ea830163c7526f3 363 SUPERFAMILY SSF81271 279 360 4.58E-37 T 10-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 VF_0762 65ac792b7fb827308ea830163c7526f3 363 Gene3D G3DSA:3.10.20.30 48 361 3.0E-151 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_0762 65ac792b7fb827308ea830163c7526f3 363 Pfam PF01926 50S ribosome-binding GTPase 5 121 5.3E-22 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0762 65ac792b7fb827308ea830163c7526f3 363 Gene3D G3DSA:1.10.150.300 113 200 3.0E-151 T 10-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 VF_0762 65ac792b7fb827308ea830163c7526f3 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.9E-34 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0762 65ac792b7fb827308ea830163c7526f3 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.9E-34 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0762 65ac792b7fb827308ea830163c7526f3 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.9E-34 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0762 65ac792b7fb827308ea830163c7526f3 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.9E-34 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0762 65ac792b7fb827308ea830163c7526f3 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 1.3E-39 T 10-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 VF_2510 de17f88f1d3a070f372dd2efb39edc79 640 Pfam PF05043 Mga helix-turn-helix domain 91 165 2.6E-11 T 10-10-2018 IPR007737 Mga helix-turn-helix domain VF_2510 de17f88f1d3a070f372dd2efb39edc79 640 Gene3D G3DSA:3.40.50.2300 400 483 5.9E-5 T 10-10-2018 VF_2510 de17f88f1d3a070f372dd2efb39edc79 640 Gene3D G3DSA:1.10.10.10 9 151 1.0E-10 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2510 de17f88f1d3a070f372dd2efb39edc79 640 Gene3D G3DSA:3.40.930.10 499 630 4.5E-17 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_2510 de17f88f1d3a070f372dd2efb39edc79 640 SUPERFAMILY SSF55804 489 626 4.71E-23 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_2510 de17f88f1d3a070f372dd2efb39edc79 640 SUPERFAMILY SSF63520 292 390 8.63E-21 T 10-10-2018 IPR036634 PRD domain superfamily GO:0006355 VF_2510 de17f88f1d3a070f372dd2efb39edc79 640 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 494 627 3.1E-17 T 10-10-2018 IPR002178 PTS EIIA type-2 domain VF_2510 de17f88f1d3a070f372dd2efb39edc79 640 SUPERFAMILY SSF63520 197 278 2.88E-8 T 10-10-2018 IPR036634 PRD domain superfamily GO:0006355 VF_2510 de17f88f1d3a070f372dd2efb39edc79 640 Pfam PF08279 HTH domain 13 63 1.5E-8 T 10-10-2018 IPR013196 Helix-turn-helix, type 11 VF_2510 de17f88f1d3a070f372dd2efb39edc79 640 Gene3D G3DSA:1.10.1790.10 293 388 5.5E-15 T 10-10-2018 VF_2510 de17f88f1d3a070f372dd2efb39edc79 640 SUPERFAMILY SSF52794 401 478 2.51E-5 T 10-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VF_2510 de17f88f1d3a070f372dd2efb39edc79 640 Pfam PF00874 PRD domain 302 385 1.4E-18 T 10-10-2018 IPR011608 PRD domain GO:0006355 VF_2510 de17f88f1d3a070f372dd2efb39edc79 640 Pfam PF00874 PRD domain 203 277 2.0E-5 T 10-10-2018 IPR011608 PRD domain GO:0006355 VF_1387 01fe65ebe5a309484ba8fc5adb266afe 281 Gene3D G3DSA:3.40.250.10 162 281 4.4E-36 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_1387 01fe65ebe5a309484ba8fc5adb266afe 281 SMART SM00450 158 278 7.2E-13 T 10-10-2018 IPR001763 Rhodanese-like domain VF_1387 01fe65ebe5a309484ba8fc5adb266afe 281 SMART SM00450 11 135 1.4E-12 T 10-10-2018 IPR001763 Rhodanese-like domain VF_1387 01fe65ebe5a309484ba8fc5adb266afe 281 SUPERFAMILY SSF52821 169 281 1.83E-29 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_1387 01fe65ebe5a309484ba8fc5adb266afe 281 SUPERFAMILY SSF52821 7 143 3.67E-31 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_1387 01fe65ebe5a309484ba8fc5adb266afe 281 Pfam PF00581 Rhodanese-like domain 12 132 9.0E-12 T 10-10-2018 IPR001763 Rhodanese-like domain VF_1387 01fe65ebe5a309484ba8fc5adb266afe 281 Pfam PF00581 Rhodanese-like domain 170 274 8.3E-9 T 10-10-2018 IPR001763 Rhodanese-like domain VF_1387 01fe65ebe5a309484ba8fc5adb266afe 281 Gene3D G3DSA:3.40.250.10 2 146 1.1E-35 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_2340 6ed7596f3280a296f0426e1d458962ca 320 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 4 301 7.9E-129 T 10-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 Gene3D G3DSA:3.40.50.460 143 252 7.0E-117 T 10-10-2018 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 Pfam PF00365 Phosphofructokinase 4 275 1.5E-108 T 10-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 2 320 46.695 T 10-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 Gene3D G3DSA:3.40.50.450 4 287 7.0E-117 T 10-10-2018 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 PIRSF PIRSF000532 1 320 1.2E-126 T 10-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 ProSitePatterns PS00433 Phosphofructokinase signature. 244 262 - T 10-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 SUPERFAMILY SSF53784 3 309 3.92E-111 T 10-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 32 45 1.1E-81 T 10-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 177 194 1.1E-81 T 10-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 121 138 1.1E-81 T 10-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 159 175 1.1E-81 T 10-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 139 157 1.1E-81 T 10-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 240 262 1.1E-81 T 10-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 7 26 1.1E-81 T 10-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 94 110 1.1E-81 T 10-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VF_2340 6ed7596f3280a296f0426e1d458962ca 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 213 225 1.1E-81 T 10-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VF_A1171 01a097a584bd21a91384e3c30e5615f9 324 SUPERFAMILY SSF110849 76 150 5.75E-7 T 10-10-2018 IPR036086 ParB/Sulfiredoxin superfamily VF_A1171 01a097a584bd21a91384e3c30e5615f9 324 Pfam PF02195 ParB-like nuclease domain 77 142 2.0E-5 T 10-10-2018 IPR003115 ParB/Sulfiredoxin VF_A1171 01a097a584bd21a91384e3c30e5615f9 324 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 68 233 5.8E-21 T 10-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 VF_A1171 01a097a584bd21a91384e3c30e5615f9 324 SMART SM00470 58 149 0.0024 T 10-10-2018 IPR003115 ParB/Sulfiredoxin VF_A1171 01a097a584bd21a91384e3c30e5615f9 324 Gene3D G3DSA:1.10.10.2830 153 268 6.3E-18 T 10-10-2018 VF_A1171 01a097a584bd21a91384e3c30e5615f9 324 SUPERFAMILY SSF109709 151 241 1.7E-5 T 10-10-2018 VF_1879 1607f8bbbe60afcfb1a386ae2cc3564c 306 SUPERFAMILY SSF52172 181 305 3.84E-26 T 10-10-2018 IPR011006 CheY-like superfamily VF_1879 1607f8bbbe60afcfb1a386ae2cc3564c 306 Gene3D G3DSA:2.30.30.40 23 147 3.4E-29 T 10-10-2018 VF_1879 1607f8bbbe60afcfb1a386ae2cc3564c 306 Gene3D G3DSA:2.40.50.180 39 153 3.4E-29 T 10-10-2018 VF_1879 1607f8bbbe60afcfb1a386ae2cc3564c 306 Pfam PF01584 CheW-like domain 21 155 9.4E-34 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VF_1879 1607f8bbbe60afcfb1a386ae2cc3564c 306 SUPERFAMILY SSF50341 16 157 1.57E-35 T 10-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VF_1879 1607f8bbbe60afcfb1a386ae2cc3564c 306 Pfam PF00072 Response regulator receiver domain 182 300 1.5E-18 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1879 1607f8bbbe60afcfb1a386ae2cc3564c 306 Gene3D G3DSA:3.40.50.2300 165 306 4.5E-26 T 10-10-2018 VF_1879 1607f8bbbe60afcfb1a386ae2cc3564c 306 SMART SM00448 180 300 2.3E-19 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1879 1607f8bbbe60afcfb1a386ae2cc3564c 306 SMART SM00260 17 153 4.5E-24 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VF_1879 1607f8bbbe60afcfb1a386ae2cc3564c 306 PIRSF PIRSF002867 1 306 3.7E-103 T 10-10-2018 IPR024181 Chemotaxis response regulator CheV VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 Pfam PF16750 Sensor domain of 2-component histidine kinase 54 154 1.3E-28 T 10-10-2018 IPR031930 2-component histidine kinase, sensor domain VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 4.9E-10 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 442 4.9E-10 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 4.9E-10 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 461 1.5E-19 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 SMART SM00388 239 303 6.5E-11 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 SUPERFAMILY SSF47384 222 303 5.1E-14 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 SMART SM00387 348 462 3.6E-23 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 302 2.0E-11 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 Gene3D G3DSA:3.30.450.170 45 155 4.3E-5 T 10-10-2018 IPR038428 2-component histidine kinase, sensor domain superfamily VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 SUPERFAMILY SSF55874 293 462 5.24E-34 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 SMART SM00304 183 238 4.0E-9 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 Gene3D G3DSA:1.10.287.130 187 304 1.6E-25 T 10-10-2018 VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 SUPERFAMILY SSF158472 183 235 1.7E-6 T 10-10-2018 VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 Gene3D G3DSA:3.30.565.10 317 462 2.8E-29 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0182 6a33306bf5ee245993853f11b9bad5fa 462 Pfam PF00672 HAMP domain 183 234 8.4E-8 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_0490 00615b1de60c597a34243f0258430e3c 709 Gene3D G3DSA:3.30.230.70 2 229 1.4E-77 T 10-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VF_0490 00615b1de60c597a34243f0258430e3c 709 SUPERFAMILY SSF54791 555 640 1.48E-21 T 10-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 VF_0490 00615b1de60c597a34243f0258430e3c 709 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 243 321 5.5E-23 T 10-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 VF_0490 00615b1de60c597a34243f0258430e3c 709 Pfam PF00575 S1 RNA binding domain 620 691 1.2E-19 T 10-10-2018 IPR003029 S1 domain GO:0003676 VF_0490 00615b1de60c597a34243f0258430e3c 709 SUPERFAMILY SSF50249 621 695 9.36E-21 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_0490 00615b1de60c597a34243f0258430e3c 709 Gene3D G3DSA:2.40.50.140 623 695 6.8E-29 T 10-10-2018 VF_0490 00615b1de60c597a34243f0258430e3c 709 SUPERFAMILY SSF55666 451 550 2.8E-28 T 10-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VF_0490 00615b1de60c597a34243f0258430e3c 709 Pfam PF03725 3' exoribonuclease family, domain 2 148 211 1.2E-12 T 10-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VF_0490 00615b1de60c597a34243f0258430e3c 709 Pfam PF00013 KH domain 557 615 4.7E-9 T 10-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 VF_0490 00615b1de60c597a34243f0258430e3c 709 SMART SM00316 621 691 1.4E-24 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_0490 00615b1de60c597a34243f0258430e3c 709 SUPERFAMILY SSF54211 3 145 2.18E-48 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_0490 00615b1de60c597a34243f0258430e3c 709 PIRSF PIRSF005499 3 709 1.9E-295 T 10-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 VF_0490 00615b1de60c597a34243f0258430e3c 709 SUPERFAMILY SSF54211 291 489 1.01E-46 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_0490 00615b1de60c597a34243f0258430e3c 709 SMART SM00322 553 618 1.2E-11 T 10-10-2018 IPR004087 K Homology domain GO:0003676 VF_0490 00615b1de60c597a34243f0258430e3c 709 Pfam PF01138 3' exoribonuclease family, domain 1 325 457 3.9E-20 T 10-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VF_0490 00615b1de60c597a34243f0258430e3c 709 Pfam PF01138 3' exoribonuclease family, domain 1 17 145 4.7E-19 T 10-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VF_0490 00615b1de60c597a34243f0258430e3c 709 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 11 692 0.0 T 10-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 VF_0490 00615b1de60c597a34243f0258430e3c 709 Gene3D G3DSA:3.30.1370.10 551 622 5.6E-19 T 10-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 VF_0490 00615b1de60c597a34243f0258430e3c 709 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 4 694 30.074 T 10-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 VF_0490 00615b1de60c597a34243f0258430e3c 709 Gene3D G3DSA:3.30.230.70 234 550 2.2E-114 T 10-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VF_0490 00615b1de60c597a34243f0258430e3c 709 SUPERFAMILY SSF55666 146 236 4.07E-29 T 10-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VF_1324 e1063d3eb68b705115fb24758bb7cc82 218 SUPERFAMILY SSF141571 4 49 1.73E-9 T 10-10-2018 VF_1324 e1063d3eb68b705115fb24758bb7cc82 218 Gene3D G3DSA:2.160.20.80 2 217 3.3E-61 T 10-10-2018 VF_1324 e1063d3eb68b705115fb24758bb7cc82 218 Pfam PF00805 Pentapeptide repeats (8 copies) 8 43 1.6E-6 T 10-10-2018 IPR001646 Pentapeptide repeat VF_1324 e1063d3eb68b705115fb24758bb7cc82 218 Pfam PF00805 Pentapeptide repeats (8 copies) 55 83 7.8E-4 T 10-10-2018 IPR001646 Pentapeptide repeat VF_1324 e1063d3eb68b705115fb24758bb7cc82 218 Pfam PF13599 Pentapeptide repeats (9 copies) 97 173 1.3E-11 T 10-10-2018 IPR001646 Pentapeptide repeat VF_1324 e1063d3eb68b705115fb24758bb7cc82 218 SUPERFAMILY SSF141571 54 215 1.08E-38 T 10-10-2018 VF_0270 748de566b5ab5036916ccfdf15389194 952 Gene3D G3DSA:2.30.30.140 1 53 2.1E-23 T 10-10-2018 VF_0270 748de566b5ab5036916ccfdf15389194 952 SMART SM00487 150 342 6.6E-16 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_0270 748de566b5ab5036916ccfdf15389194 952 Pfam PF00271 Helicase conserved C-terminal domain 493 603 3.3E-16 T 10-10-2018 IPR001650 Helicase, C-terminal VF_0270 748de566b5ab5036916ccfdf15389194 952 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 951 28.461 T 10-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 VF_0270 748de566b5ab5036916ccfdf15389194 952 Gene3D G3DSA:2.30.30.930 55 114 3.3E-27 T 10-10-2018 VF_0270 748de566b5ab5036916ccfdf15389194 952 Gene3D G3DSA:3.40.50.10810 150 430 1.0E-104 T 10-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily VF_0270 748de566b5ab5036916ccfdf15389194 952 Gene3D G3DSA:3.40.50.300 431 635 3.3E-50 T 10-10-2018 VF_0270 748de566b5ab5036916ccfdf15389194 952 Pfam PF12137 RNA polymerase recycling family C-terminal 607 944 1.6E-136 T 10-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 VF_0270 748de566b5ab5036916ccfdf15389194 952 SUPERFAMILY SSF52540 119 378 6.91E-38 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0270 748de566b5ab5036916ccfdf15389194 952 Gene3D G3DSA:3.30.360.80 714 786 3.3E-28 T 10-10-2018 VF_0270 748de566b5ab5036916ccfdf15389194 952 SUPERFAMILY SSF52540 273 647 4.52E-46 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0270 748de566b5ab5036916ccfdf15389194 952 SMART SM00490 519 603 6.3E-15 T 10-10-2018 IPR001650 Helicase, C-terminal VF_0270 748de566b5ab5036916ccfdf15389194 952 Pfam PF00176 SNF2 family N-terminal domain 174 379 2.1E-16 T 10-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 VF_A0672 c9f6e05521a7ac68571ae777575d248b 712 Pfam PF07715 TonB-dependent Receptor Plug Domain 61 156 5.3E-15 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain VF_A0672 c9f6e05521a7ac68571ae777575d248b 712 Gene3D G3DSA:2.40.170.20 165 712 2.8E-105 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VF_A0672 c9f6e05521a7ac68571ae777575d248b 712 Pfam PF00593 TonB dependent receptor 233 710 8.9E-49 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VF_A0672 c9f6e05521a7ac68571ae777575d248b 712 Gene3D G3DSA:2.170.130.10 22 164 1.7E-29 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VF_A0672 c9f6e05521a7ac68571ae777575d248b 712 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 695 712 - T 10-10-2018 IPR010917 TonB-dependent receptor, conserved site VF_A0672 c9f6e05521a7ac68571ae777575d248b 712 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 63 712 4.2E-89 T 10-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 VF_A0672 c9f6e05521a7ac68571ae777575d248b 712 SUPERFAMILY SSF56935 24 712 2.08E-116 T 10-10-2018 VF_1197 bf07fa4ae98752900ef86a2e893d619d 390 Pfam PF03222 Tryptophan/tyrosine permease family 2 383 2.4E-107 T 10-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 VF_1197 bf07fa4ae98752900ef86a2e893d619d 390 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 7 378 1.9E-106 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1197 bf07fa4ae98752900ef86a2e893d619d 390 PRINTS PR00166 Aromatic amino acid permease signature 10 33 1.0E-61 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1197 bf07fa4ae98752900ef86a2e893d619d 390 PRINTS PR00166 Aromatic amino acid permease signature 82 102 1.0E-61 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1197 bf07fa4ae98752900ef86a2e893d619d 390 PRINTS PR00166 Aromatic amino acid permease signature 148 168 1.0E-61 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1197 bf07fa4ae98752900ef86a2e893d619d 390 PRINTS PR00166 Aromatic amino acid permease signature 182 204 1.0E-61 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1197 bf07fa4ae98752900ef86a2e893d619d 390 PRINTS PR00166 Aromatic amino acid permease signature 221 240 1.0E-61 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1197 bf07fa4ae98752900ef86a2e893d619d 390 PRINTS PR00166 Aromatic amino acid permease signature 310 328 1.0E-61 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1197 bf07fa4ae98752900ef86a2e893d619d 390 PRINTS PR00166 Aromatic amino acid permease signature 331 350 1.0E-61 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1197 bf07fa4ae98752900ef86a2e893d619d 390 PRINTS PR00166 Aromatic amino acid permease signature 37 56 1.0E-61 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_A0088 e15a551315ccd1edd4dd20656e6edd2a 204 Gene3D G3DSA:1.10.357.10 63 202 5.8E-28 T 10-10-2018 VF_A0088 e15a551315ccd1edd4dd20656e6edd2a 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 6.8E-8 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_A0088 e15a551315ccd1edd4dd20656e6edd2a 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 6.8E-8 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_A0088 e15a551315ccd1edd4dd20656e6edd2a 204 Gene3D G3DSA:1.10.10.60 4 61 2.8E-17 T 10-10-2018 VF_A0088 e15a551315ccd1edd4dd20656e6edd2a 204 SUPERFAMILY SSF46689 5 84 1.8E-16 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0088 e15a551315ccd1edd4dd20656e6edd2a 204 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 149 201 2.7E-13 T 10-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type VF_A0088 e15a551315ccd1edd4dd20656e6edd2a 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 1.7E-13 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_A0088 e15a551315ccd1edd4dd20656e6edd2a 204 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 59 - T 10-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VF_2079 4803ef267d64a1e5c10c6d3c8e61528b 377 Gene3D G3DSA:2.170.280.10 190 284 5.3E-43 T 10-10-2018 VF_2079 4803ef267d64a1e5c10c6d3c8e61528b 377 PRINTS PR00207 Flagellin signature 76 95 3.5E-24 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_2079 4803ef267d64a1e5c10c6d3c8e61528b 377 PRINTS PR00207 Flagellin signature 37 54 3.5E-24 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_2079 4803ef267d64a1e5c10c6d3c8e61528b 377 PRINTS PR00207 Flagellin signature 111 134 3.5E-24 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_2079 4803ef267d64a1e5c10c6d3c8e61528b 377 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 1.0E-36 T 10-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VF_2079 4803ef267d64a1e5c10c6d3c8e61528b 377 Pfam PF00700 Bacterial flagellin C-terminal helical region 291 376 1.6E-23 T 10-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VF_2079 4803ef267d64a1e5c10c6d3c8e61528b 377 SUPERFAMILY SSF64518 1 376 1.96E-89 T 10-10-2018 VF_2079 4803ef267d64a1e5c10c6d3c8e61528b 377 Gene3D G3DSA:1.20.1330.10 285 336 5.3E-43 T 10-10-2018 VF_2079 4803ef267d64a1e5c10c6d3c8e61528b 377 Gene3D G3DSA:1.20.1330.10 45 171 1.0E-65 T 10-10-2018 VF_2079 4803ef267d64a1e5c10c6d3c8e61528b 377 Gene3D G3DSA:1.20.58.1830 5 33 1.0E-65 T 10-10-2018 VF_2079 4803ef267d64a1e5c10c6d3c8e61528b 377 Gene3D G3DSA:1.20.58.1830 342 376 5.3E-43 T 10-10-2018 VF_2079 4803ef267d64a1e5c10c6d3c8e61528b 377 Pfam PF07196 Flagellin hook IN motif 195 246 1.5E-8 T 10-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VF_1422 66ecedba9cfabc7faf2e642e3cf335c2 356 Gene3D G3DSA:3.40.50.410 97 305 1.5E-47 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_1422 66ecedba9cfabc7faf2e642e3cf335c2 356 SUPERFAMILY SSF53300 95 300 9.05E-33 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_1422 66ecedba9cfabc7faf2e642e3cf335c2 356 Pfam PF00092 von Willebrand factor type A domain 99 298 2.6E-21 T 10-10-2018 IPR002035 von Willebrand factor, type A VF_1422 66ecedba9cfabc7faf2e642e3cf335c2 356 SMART SM00327 97 293 1.6E-18 T 10-10-2018 IPR002035 von Willebrand factor, type A VF_0090 5d01ec707a655eab39735771f601a330 211 Gene3D G3DSA:3.20.20.70 6 211 1.9E-78 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0090 5d01ec707a655eab39735771f601a330 211 Pfam PF01081 KDPG and KHG aldolase 12 200 5.3E-74 T 10-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VF_0090 5d01ec707a655eab39735771f601a330 211 SUPERFAMILY SSF51569 7 210 9.71E-71 T 10-10-2018 VF_0090 5d01ec707a655eab39735771f601a330 211 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 39 48 - T 10-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VF_0090 5d01ec707a655eab39735771f601a330 211 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 127 140 - T 10-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VF_0090 5d01ec707a655eab39735771f601a330 211 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 10 209 2.2E-82 T 10-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VF_2569 75b3ed2d196f8ea8fb3357f2d052998c 85 SUPERFAMILY SSF81333 3 78 1.83E-19 T 10-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily VF_2569 75b3ed2d196f8ea8fb3357f2d052998c 85 ProSitePatterns PS00605 ATP synthase c subunit signature. 39 60 - T 10-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2569 75b3ed2d196f8ea8fb3357f2d052998c 85 Gene3D G3DSA:1.20.20.10 1 77 1.2E-27 T 10-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2569 75b3ed2d196f8ea8fb3357f2d052998c 85 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 74 13.874 T 10-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2569 75b3ed2d196f8ea8fb3357f2d052998c 85 Pfam PF00137 ATP synthase subunit C 10 72 1.4E-10 T 10-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 VF_2569 75b3ed2d196f8ea8fb3357f2d052998c 85 PRINTS PR00124 ATP synthase C subunit signature 11 30 1.8E-6 T 10-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2569 75b3ed2d196f8ea8fb3357f2d052998c 85 PRINTS PR00124 ATP synthase C subunit signature 49 74 1.8E-6 T 10-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2569 75b3ed2d196f8ea8fb3357f2d052998c 85 PRINTS PR00124 ATP synthase C subunit signature 32 47 1.8E-6 T 10-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2569 75b3ed2d196f8ea8fb3357f2d052998c 85 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 19 76 1.3E-30 T 10-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 VF_1208 725fc36d42b9759eb39529efa2711a91 105 Gene3D G3DSA:2.30.130.30 3 105 5.8E-45 T 10-10-2018 VF_1208 725fc36d42b9759eb39529efa2711a91 105 Hamap MF_00684 UPF0267 protein YqfB [yqfB]. 4 105 30.217 T 10-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 VF_1208 725fc36d42b9759eb39529efa2711a91 105 SUPERFAMILY SSF88697 5 105 4.22E-33 T 10-10-2018 IPR015947 PUA-like superfamily VF_1208 725fc36d42b9759eb39529efa2711a91 105 SMART SM01022 8 105 1.6E-26 T 10-10-2018 IPR007374 ASCH domain VF_1208 725fc36d42b9759eb39529efa2711a91 105 PIRSF PIRSF029143 3 105 3.2E-45 T 10-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 VF_1208 725fc36d42b9759eb39529efa2711a91 105 Pfam PF04266 ASCH domain 8 94 1.6E-14 T 10-10-2018 IPR007374 ASCH domain VF_A1063 d3833dee86994845067409309d5ebee9 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 1.5E-8 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A1063 d3833dee86994845067409309d5ebee9 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 1.5E-8 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A1063 d3833dee86994845067409309d5ebee9 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 1.5E-8 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A1063 d3833dee86994845067409309d5ebee9 157 Gene3D G3DSA:1.10.10.10 2 135 2.9E-30 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1063 d3833dee86994845067409309d5ebee9 157 SUPERFAMILY SSF46785 5 140 2.82E-31 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A1063 d3833dee86994845067409309d5ebee9 157 SMART SM00347 24 124 6.3E-21 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A1063 d3833dee86994845067409309d5ebee9 157 Pfam PF01047 MarR family 31 89 1.9E-15 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A0846 46195973ccba3efb1d003dc299672191 396 SUPERFAMILY SSF52058 10 188 9.72E-35 T 10-10-2018 VF_A0846 46195973ccba3efb1d003dc299672191 396 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 209 236 - T 10-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 VF_A0846 46195973ccba3efb1d003dc299672191 396 Gene3D G3DSA:3.80.10.10 2 91 1.2E-12 T 10-10-2018 IPR032675 Leucine-rich repeat domain superfamily VF_A0846 46195973ccba3efb1d003dc299672191 396 Pfam PF07714 Protein tyrosine kinase 205 373 3.9E-16 T 10-10-2018 IPR001245 Serine-threonine/tyrosine-protein kinase, catalytic domain GO:0004672|GO:0006468 VF_A0846 46195973ccba3efb1d003dc299672191 396 SMART SM00369 37 58 1.2 T 10-10-2018 IPR003591 Leucine-rich repeat, typical subtype VF_A0846 46195973ccba3efb1d003dc299672191 396 SMART SM00369 149 172 15.0 T 10-10-2018 IPR003591 Leucine-rich repeat, typical subtype VF_A0846 46195973ccba3efb1d003dc299672191 396 SMART SM00369 104 126 12.0 T 10-10-2018 IPR003591 Leucine-rich repeat, typical subtype VF_A0846 46195973ccba3efb1d003dc299672191 396 Pfam PF13855 Leucine rich repeat 104 162 4.4E-7 T 10-10-2018 IPR001611 Leucine-rich repeat GO:0005515 VF_A0846 46195973ccba3efb1d003dc299672191 396 SMART SM00220 203 396 1.0E-4 T 10-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 VF_A0846 46195973ccba3efb1d003dc299672191 396 SMART SM00364 35 54 7.7 T 10-10-2018 VF_A0846 46195973ccba3efb1d003dc299672191 396 SMART SM00364 58 77 54.0 T 10-10-2018 VF_A0846 46195973ccba3efb1d003dc299672191 396 SMART SM00364 149 168 220.0 T 10-10-2018 VF_A0846 46195973ccba3efb1d003dc299672191 396 SMART SM00364 103 122 0.36 T 10-10-2018 VF_A0846 46195973ccba3efb1d003dc299672191 396 SMART SM00364 126 145 85.0 T 10-10-2018 VF_A0846 46195973ccba3efb1d003dc299672191 396 Gene3D G3DSA:3.30.200.20 190 283 3.3E-9 T 10-10-2018 VF_A0846 46195973ccba3efb1d003dc299672191 396 SUPERFAMILY SSF56112 195 370 1.48E-23 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily VF_A0846 46195973ccba3efb1d003dc299672191 396 Gene3D G3DSA:1.10.510.10 301 389 1.3E-9 T 10-10-2018 VF_A0846 46195973ccba3efb1d003dc299672191 396 Gene3D G3DSA:3.80.10.10 92 189 1.6E-20 T 10-10-2018 IPR032675 Leucine-rich repeat domain superfamily VF_0626 07e96695080e4c2370a0e57334de9d28 372 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 3 358 9.3E-157 T 10-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 VF_0626 07e96695080e4c2370a0e57334de9d28 372 SUPERFAMILY SSF102114 100 322 1.57E-13 T 10-10-2018 VF_0626 07e96695080e4c2370a0e57334de9d28 372 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 5 353 71.886 T 10-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 VF_0626 07e96695080e4c2370a0e57334de9d28 372 Gene3D G3DSA:1.10.150.530 1 67 1.3E-25 T 10-10-2018 VF_0626 07e96695080e4c2370a0e57334de9d28 372 Gene3D G3DSA:3.20.20.70 68 338 9.3E-111 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0626 07e96695080e4c2370a0e57334de9d28 372 Pfam PF04055 Radical SAM superfamily 109 282 7.2E-14 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_0626 07e96695080e4c2370a0e57334de9d28 372 PIRSF PIRSF006004 3 366 3.1E-142 T 10-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 VF_2173 6a6de9bf9719260fb09f0a9f648fbcae 551 SUPERFAMILY SSF52091 439 540 9.22E-12 T 10-10-2018 IPR036513 STAS domain superfamily VF_2173 6a6de9bf9719260fb09f0a9f648fbcae 551 Gene3D G3DSA:3.30.750.24 427 547 5.7E-13 T 10-10-2018 IPR036513 STAS domain superfamily VF_2173 6a6de9bf9719260fb09f0a9f648fbcae 551 Pfam PF01740 STAS domain 440 533 8.5E-12 T 10-10-2018 IPR002645 STAS domain VF_2173 6a6de9bf9719260fb09f0a9f648fbcae 551 Pfam PF00916 Sulfate permease family 11 376 4.5E-84 T 10-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 VF_1654 c290002ac466999326ac306187c0f93c 166 Gene3D G3DSA:3.40.630.30 2 146 2.3E-22 T 10-10-2018 VF_1654 c290002ac466999326ac306187c0f93c 166 SUPERFAMILY SSF55729 1 160 8.58E-23 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_1654 c290002ac466999326ac306187c0f93c 166 Pfam PF00583 Acetyltransferase (GNAT) family 39 137 4.8E-11 T 10-10-2018 IPR000182 GNAT domain VF_1078 97b762bbf21675d14bbdb09aa8d0d9bb 134 SUPERFAMILY SSF102462 2 134 3.66E-40 T 10-10-2018 IPR023476 Peptidyl-tRNA hydrolase II domain superfamily MetaCyc: PWY-6308 VF_1078 97b762bbf21675d14bbdb09aa8d0d9bb 134 Pfam PF09391 Protein of unknown function (DUF2000) 4 134 1.1E-44 T 10-10-2018 IPR018988 Protein of unknown function DUF2000 VF_1078 97b762bbf21675d14bbdb09aa8d0d9bb 134 Gene3D G3DSA:3.40.1490.10 3 133 2.0E-14 T 10-10-2018 IPR023476 Peptidyl-tRNA hydrolase II domain superfamily MetaCyc: PWY-6308 VF_1078 97b762bbf21675d14bbdb09aa8d0d9bb 134 PIRSF PIRSF033736 1 134 2.7E-44 T 10-10-2018 IPR017021 Uncharacterised conserved protein UCP033763 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1062 13.039 T 10-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 673 874 2.6E-36 T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.7E-71 T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 838 845 - T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 SUPERFAMILY SSF56059 673 932 2.65E-103 T 10-10-2018 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 Gene3D G3DSA:3.30.470.20 119 403 1.1E-127 T 10-10-2018 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 SUPERFAMILY SSF52335 938 1071 2.22E-34 T 10-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 SUPERFAMILY SSF52440 556 675 3.17E-49 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 1.6E-63 T 10-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 1.6E-63 T 10-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 1.6E-63 T 10-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 1.6E-63 T 10-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 1.6E-63 T 10-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 1.6E-63 T 10-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 1.6E-63 T 10-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 SMART SM01096 424 547 8.4E-74 T 10-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 709 723 - T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 1.7E-38 T 10-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 SMART SM00851 955 1041 9.6E-27 T 10-10-2018 IPR011607 Methylglyoxal synthase-like domain VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 SUPERFAMILY SSF56059 128 401 7.6E-108 T 10-10-2018 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 Gene3D G3DSA:3.40.50.1380 937 1072 4.1E-33 T 10-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 Gene3D G3DSA:1.10.1030.10 404 553 1.3E-49 T 10-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1067 13.321 T 10-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 Gene3D G3DSA:3.30.470.20 665 935 4.3E-123 T 10-10-2018 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 Gene3D G3DSA:3.40.50.20 554 662 3.7E-49 T 10-10-2018 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 Gene3D G3DSA:3.40.50.20 1 116 6.3E-51 T 10-10-2018 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1050 0.0 T 10-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 Pfam PF02142 MGS-like domain 956 1041 2.9E-16 T 10-10-2018 IPR011607 Methylglyoxal synthase-like domain VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 SUPERFAMILY SSF48108 396 554 2.35E-51 T 10-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_0473 5f06ebd1442defc97a6f35cd1f4caa51 1076 SUPERFAMILY SSF52440 1 127 4.75E-51 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VF_1350 d73d60920c0bb0507fbddd834d847af1 681 SUPERFAMILY SSF48452 78 312 1.39E-11 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1350 d73d60920c0bb0507fbddd834d847af1 681 SUPERFAMILY SSF81901 245 438 3.66E-6 T 10-10-2018 VF_1350 d73d60920c0bb0507fbddd834d847af1 681 Gene3D G3DSA:1.25.40.10 29 292 6.7E-16 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1350 d73d60920c0bb0507fbddd834d847af1 681 SMART SM00028 240 273 0.16 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1350 d73d60920c0bb0507fbddd834d847af1 681 SMART SM00028 409 442 370.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1350 d73d60920c0bb0507fbddd834d847af1 681 SMART SM00028 119 152 110.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1350 d73d60920c0bb0507fbddd834d847af1 681 SMART SM00267 505 678 2.1E-52 T 10-10-2018 IPR000160 GGDEF domain VF_1350 d73d60920c0bb0507fbddd834d847af1 681 Gene3D G3DSA:1.25.40.10 327 504 2.1E-6 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1350 d73d60920c0bb0507fbddd834d847af1 681 SUPERFAMILY SSF55073 521 676 2.51E-40 T 10-10-2018 IPR029787 Nucleotide cyclase VF_1350 d73d60920c0bb0507fbddd834d847af1 681 Pfam PF00990 Diguanylate cyclase, GGDEF domain 517 674 2.7E-44 T 10-10-2018 IPR000160 GGDEF domain VF_1350 d73d60920c0bb0507fbddd834d847af1 681 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 514 675 5.3E-43 T 10-10-2018 IPR000160 GGDEF domain VF_1350 d73d60920c0bb0507fbddd834d847af1 681 Gene3D G3DSA:3.30.70.270 505 678 4.0E-47 T 10-10-2018 VF_0252 78cd0edada986b082e067100dae30ea4 177 Gene3D G3DSA:3.90.930.12 1 82 6.4E-30 T 10-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0252 78cd0edada986b082e067100dae30ea4 177 Gene3D G3DSA:3.90.930.12 83 177 2.2E-38 T 10-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0252 78cd0edada986b082e067100dae30ea4 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.323 T 10-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VF_0252 78cd0edada986b082e067100dae30ea4 177 Pfam PF00347 Ribosomal protein L6 91 164 1.3E-17 T 10-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0252 78cd0edada986b082e067100dae30ea4 177 Pfam PF00347 Ribosomal protein L6 11 82 7.0E-19 T 10-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0252 78cd0edada986b082e067100dae30ea4 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 10-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0252 78cd0edada986b082e067100dae30ea4 177 SUPERFAMILY SSF56053 1 82 1.47E-24 T 10-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0252 78cd0edada986b082e067100dae30ea4 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 3.8E-73 T 10-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VF_0252 78cd0edada986b082e067100dae30ea4 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 6.0E-33 T 10-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VF_0252 78cd0edada986b082e067100dae30ea4 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 6.0E-33 T 10-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VF_0252 78cd0edada986b082e067100dae30ea4 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 6.0E-33 T 10-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VF_0252 78cd0edada986b082e067100dae30ea4 177 SUPERFAMILY SSF56053 83 177 4.03E-35 T 10-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0252 78cd0edada986b082e067100dae30ea4 177 PIRSF PIRSF002162 1 177 5.0E-44 T 10-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_2317 403a5a561fa0b77ae2247e0c0991eba0 210 Pfam PF08238 Sel1 repeat 108 142 0.0046 T 10-10-2018 IPR006597 Sel1-like repeat VF_2317 403a5a561fa0b77ae2247e0c0991eba0 210 Pfam PF08238 Sel1 repeat 73 105 0.0057 T 10-10-2018 IPR006597 Sel1-like repeat VF_2317 403a5a561fa0b77ae2247e0c0991eba0 210 SMART SM00671 107 142 1.1E-4 T 10-10-2018 IPR006597 Sel1-like repeat VF_2317 403a5a561fa0b77ae2247e0c0991eba0 210 SMART SM00671 71 106 0.022 T 10-10-2018 IPR006597 Sel1-like repeat VF_2317 403a5a561fa0b77ae2247e0c0991eba0 210 SMART SM00671 143 178 42.0 T 10-10-2018 IPR006597 Sel1-like repeat VF_2317 403a5a561fa0b77ae2247e0c0991eba0 210 Gene3D G3DSA:1.25.40.10 41 210 2.7E-24 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_2317 403a5a561fa0b77ae2247e0c0991eba0 210 SUPERFAMILY SSF81901 64 176 2.49E-21 T 10-10-2018 VF_A1168 68128251b56b188b755d405603d2e66e 463 Gene3D G3DSA:2.40.30.170 354 441 3.2E-15 T 10-10-2018 VF_A1168 68128251b56b188b755d405603d2e66e 463 Gene3D G3DSA:2.40.50.100 317 353 3.2E-15 T 10-10-2018 VF_A1168 68128251b56b188b755d405603d2e66e 463 Gene3D G3DSA:1.10.287.470 105 130 3.7E-6 T 10-10-2018 VF_A1168 68128251b56b188b755d405603d2e66e 463 ProSitePatterns PS00543 HlyD family secretion proteins signature. 428 450 - T 10-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 VF_A1168 68128251b56b188b755d405603d2e66e 463 SUPERFAMILY SSF56954 173 259 7.59E-5 T 10-10-2018 VF_A1168 68128251b56b188b755d405603d2e66e 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 40 63 8.4E-50 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VF_A1168 68128251b56b188b755d405603d2e66e 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 329 350 8.4E-50 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VF_A1168 68128251b56b188b755d405603d2e66e 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 82 102 8.4E-50 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VF_A1168 68128251b56b188b755d405603d2e66e 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 386 409 8.4E-50 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VF_A1168 68128251b56b188b755d405603d2e66e 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 428 443 8.4E-50 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VF_A1168 68128251b56b188b755d405603d2e66e 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 443 463 8.4E-50 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VF_A1168 68128251b56b188b755d405603d2e66e 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 362 386 8.4E-50 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VF_A1168 68128251b56b188b755d405603d2e66e 463 SUPERFAMILY SSF111369 72 126 1.12E-5 T 10-10-2018 VF_A1168 68128251b56b188b755d405603d2e66e 463 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 32 463 1.3E-129 T 10-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 VF_A1168 68128251b56b188b755d405603d2e66e 463 Pfam PF13533 Biotin-lipoyl like 79 108 9.8E-6 T 10-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VF_A1168 68128251b56b188b755d405603d2e66e 463 Gene3D G3DSA:1.10.287.470 192 316 3.2E-15 T 10-10-2018 VF_A1168 68128251b56b188b755d405603d2e66e 463 Pfam PF13437 HlyD family secretion protein 316 423 1.2E-17 T 10-10-2018 VF_A1168 68128251b56b188b755d405603d2e66e 463 Gene3D G3DSA:2.40.50.100 79 104 3.7E-6 T 10-10-2018 VF_2133 c78cf7fdd1ecfe11758451850b5f1ee5 370 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 68 274 8.2E-20 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VF_2133 c78cf7fdd1ecfe11758451850b5f1ee5 370 SUPERFAMILY SSF111369 70 284 3.79E-28 T 10-10-2018 VF_2133 c78cf7fdd1ecfe11758451850b5f1ee5 370 Gene3D G3DSA:2.40.420.20 290 363 1.3E-46 T 10-10-2018 VF_2133 c78cf7fdd1ecfe11758451850b5f1ee5 370 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 57 367 1.1E-42 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VF_2133 c78cf7fdd1ecfe11758451850b5f1ee5 370 Gene3D G3DSA:1.10.287.470 116 175 1.3E-46 T 10-10-2018 VF_2133 c78cf7fdd1ecfe11758451850b5f1ee5 370 Gene3D G3DSA:2.40.30.170 70 289 1.3E-46 T 10-10-2018 VF_2133 c78cf7fdd1ecfe11758451850b5f1ee5 370 Gene3D G3DSA:2.40.50.100 81 209 1.3E-46 T 10-10-2018 VF_0581 f33431d9b5df7dbb55bab5d2df13d678 1139 SUPERFAMILY SSF52540 2 354 1.19E-120 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0581 f33431d9b5df7dbb55bab5d2df13d678 1139 PIRSF PIRSF000980 1 1139 0.0 T 10-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 VF_0581 f33431d9b5df7dbb55bab5d2df13d678 1139 Gene3D G3DSA:1.10.10.160 79 187 1.2E-122 T 10-10-2018 IPR013986 DExx box DNA helicase domain superfamily VF_0581 f33431d9b5df7dbb55bab5d2df13d678 1139 Gene3D G3DSA:3.40.50.10930 4 324 1.2E-122 T 10-10-2018 VF_0581 f33431d9b5df7dbb55bab5d2df13d678 1139 Gene3D G3DSA:1.10.10.990 869 945 2.8E-14 T 10-10-2018 VF_0581 f33431d9b5df7dbb55bab5d2df13d678 1139 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1137 20.397 T 10-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 VF_0581 f33431d9b5df7dbb55bab5d2df13d678 1139 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 2 809 8.7E-293 T 10-10-2018 VF_0581 f33431d9b5df7dbb55bab5d2df13d678 1139 Gene3D G3DSA:1.10.486.10 460 668 6.0E-188 T 10-10-2018 VF_0581 f33431d9b5df7dbb55bab5d2df13d678 1139 SUPERFAMILY SSF52540 367 812 4.25E-100 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0581 f33431d9b5df7dbb55bab5d2df13d678 1139 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1100 0.0 T 10-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 VF_0581 f33431d9b5df7dbb55bab5d2df13d678 1139 Gene3D G3DSA:3.40.50.300 342 811 6.0E-188 T 10-10-2018 VF_0581 f33431d9b5df7dbb55bab5d2df13d678 1139 SUPERFAMILY SSF52980 824 1127 2.73E-74 T 10-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VF_A0901 f0d903dbca7e9981bf00627628c12c54 327 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 38 170 5.1E-62 T 10-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 VF_A0901 f0d903dbca7e9981bf00627628c12c54 327 PIRSF PIRSF002849 1 327 1.3E-125 T 10-10-2018 VF_A0901 f0d903dbca7e9981bf00627628c12c54 327 Gene3D G3DSA:1.10.8.300 211 324 1.2E-33 T 10-10-2018 VF_A0901 f0d903dbca7e9981bf00627628c12c54 327 Gene3D G3DSA:3.40.50.300 2 210 1.1E-50 T 10-10-2018 VF_A0901 f0d903dbca7e9981bf00627628c12c54 327 SUPERFAMILY SSF52540 7 302 2.17E-44 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0901 f0d903dbca7e9981bf00627628c12c54 327 SMART SM00382 35 178 0.0076 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 SUPERFAMILY SSF81923 18 127 9.02E-7 T 10-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 SMART SM00382 206 352 1.4E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 SMART SM00382 593 752 3.5E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 SMART SM01086 764 855 7.3E-12 T 10-10-2018 IPR019489 Clp ATPase, C-terminal VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 764 833 1.8E-12 T 10-10-2018 IPR019489 Clp ATPase, C-terminal VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 302 314 - T 10-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 211 323 8.3E-9 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 13 847 0.0 T 10-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 SUPERFAMILY SSF52540 167 541 2.58E-72 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 Gene3D G3DSA:3.40.50.300 351 540 2.6E-44 T 10-10-2018 VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 Gene3D G3DSA:3.40.50.300 157 350 1.3E-62 T 10-10-2018 VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 Pfam PF07724 AAA domain (Cdc48 subfamily) 593 758 6.6E-42 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 SUPERFAMILY SSF52540 542 833 3.41E-61 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 Gene3D G3DSA:1.10.8.60 764 857 5.0E-11 T 10-10-2018 VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 Gene3D G3DSA:3.40.50.300 546 763 1.2E-67 T 10-10-2018 VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 Gene3D G3DSA:1.10.1780.10 5 156 9.2E-24 T 10-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 627 645 - T 10-10-2018 IPR028299 ClpA/B, conserved site 2 VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 597 615 4.9E-32 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 671 689 4.9E-32 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 642 660 4.9E-32 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 VF_0999 ed9dca63cbfe28d39e2f72736e3e5659 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 704 718 4.9E-32 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 VF_0977 4ab92694309eb5fcb3913ad3a6e68542 140 SUPERFAMILY SSF55729 6 139 1.6E-33 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_0977 4ab92694309eb5fcb3913ad3a6e68542 140 Pfam PF13673 Acetyltransferase (GNAT) domain 24 139 1.1E-23 T 10-10-2018 IPR000182 GNAT domain VF_0977 4ab92694309eb5fcb3913ad3a6e68542 140 Gene3D G3DSA:3.40.630.30 5 140 2.7E-39 T 10-10-2018 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 PRINTS PR00738 Glycosyl hydrolase family 20 signature 327 344 7.5E-48 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 PRINTS PR00738 Glycosyl hydrolase family 20 signature 433 450 7.5E-48 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 PRINTS PR00738 Glycosyl hydrolase family 20 signature 356 377 7.5E-48 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 PRINTS PR00738 Glycosyl hydrolase family 20 signature 294 314 7.5E-48 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 PRINTS PR00738 Glycosyl hydrolase family 20 signature 730 746 7.5E-48 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 PRINTS PR00738 Glycosyl hydrolase family 20 signature 500 518 7.5E-48 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 PRINTS PR00738 Glycosyl hydrolase family 20 signature 527 540 7.5E-48 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 PRINTS PR00738 Glycosyl hydrolase family 20 signature 748 765 7.5E-48 T 10-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 Pfam PF03174 Chitobiase/beta-hexosaminidase C-terminal domain 806 882 7.4E-29 T 10-10-2018 IPR004867 Chitobiase C-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 Gene3D G3DSA:3.20.20.80 331 819 2.7E-159 T 10-10-2018 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 Gene3D G3DSA:2.60.40.290 29 171 1.0E-54 T 10-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 Gene3D G3DSA:2.60.40.10 820 885 4.3E-25 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 216 330 8.0E-16 T 10-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 SUPERFAMILY SSF81296 782 885 8.54E-38 T 10-10-2018 IPR014756 Immunoglobulin E-set VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 SUPERFAMILY SSF51445 333 775 4.21E-137 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 SMART SM01081 38 199 5.8E-85 T 10-10-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 Pfam PF03173 Putative carbohydrate binding domain 39 197 6.9E-63 T 10-10-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 SUPERFAMILY SSF49384 30 202 7.95E-66 T 10-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 333 766 1.5E-106 T 10-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 SUPERFAMILY SSF55545 208 332 2.22E-25 T 10-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 VF_A1010 622fe166b19e1cf5ddffa610adaa8d0a 886 Gene3D G3DSA:3.30.379.10 209 330 4.1E-25 T 10-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 VF_0856 d39b91eecb2d8c395bd7b7c0db5acddb 208 Pfam PF11659 Protein of unknown function (DUF3261) 56 196 4.8E-36 T 10-10-2018 IPR021675 Protein of unknown function DUF3261 VF_0936 5c114e2db3e675449bda60e926cf6698 676 SMART SM00490 461 547 4.9E-20 T 10-10-2018 IPR001650 Helicase, C-terminal VF_0936 5c114e2db3e675449bda60e926cf6698 676 SUPERFAMILY SSF52540 5 416 2.53E-136 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0936 5c114e2db3e675449bda60e926cf6698 676 Pfam PF04851 Type III restriction enzyme, res subunit 15 133 1.9E-7 T 10-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 VF_0936 5c114e2db3e675449bda60e926cf6698 676 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 671 42.844 T 10-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 VF_0936 5c114e2db3e675449bda60e926cf6698 676 SMART SM00487 9 426 2.9E-27 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_0936 5c114e2db3e675449bda60e926cf6698 676 Gene3D G3DSA:3.40.50.300 416 597 2.4E-49 T 10-10-2018 VF_0936 5c114e2db3e675449bda60e926cf6698 676 Gene3D G3DSA:3.40.50.300 270 415 3.8E-50 T 10-10-2018 VF_0936 5c114e2db3e675449bda60e926cf6698 676 SUPERFAMILY SSF46600 627 672 1.96E-12 T 10-10-2018 IPR036876 UVR domain superfamily VF_0936 5c114e2db3e675449bda60e926cf6698 676 Gene3D G3DSA:4.10.860.10 631 676 3.1E-21 T 10-10-2018 VF_0936 5c114e2db3e675449bda60e926cf6698 676 Pfam PF02151 UvrB/uvrC motif 636 671 4.0E-9 T 10-10-2018 IPR001943 UVR domain GO:0005515 VF_0936 5c114e2db3e675449bda60e926cf6698 676 Gene3D G3DSA:3.40.50.300 1 234 4.1E-73 T 10-10-2018 VF_0936 5c114e2db3e675449bda60e926cf6698 676 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 669 0.0 T 10-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 VF_0936 5c114e2db3e675449bda60e926cf6698 676 Pfam PF12344 Ultra-violet resistance protein B 553 594 1.5E-18 T 10-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain VF_0936 5c114e2db3e675449bda60e926cf6698 676 SUPERFAMILY SSF52540 333 603 1.13E-35 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0936 5c114e2db3e675449bda60e926cf6698 676 Pfam PF00271 Helicase conserved C-terminal domain 437 545 4.0E-18 T 10-10-2018 IPR001650 Helicase, C-terminal VF_2171 6b0710b102a83b273ffa8a171a8d2869 256 PIRSF PIRSF006648 7 253 1.8E-24 T 10-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VF_2171 6b0710b102a83b273ffa8a171a8d2869 256 Pfam PF01061 ABC-2 type transporter 8 218 1.5E-38 T 10-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 VF_2171 6b0710b102a83b273ffa8a171a8d2869 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 58 80 4.6E-9 T 10-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VF_2171 6b0710b102a83b273ffa8a171a8d2869 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 176 195 4.6E-9 T 10-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VF_2171 6b0710b102a83b273ffa8a171a8d2869 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 138 162 4.6E-9 T 10-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VF_2171 6b0710b102a83b273ffa8a171a8d2869 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 196 215 4.6E-9 T 10-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VF_A1040 5008bee2151d1419dba3e07248dfb096 75 Gene3D G3DSA:3.40.30.10 2 73 1.4E-15 T 10-10-2018 VF_A1040 5008bee2151d1419dba3e07248dfb096 75 Pfam PF00462 Glutaredoxin 4 59 1.8E-11 T 10-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 VF_A1040 5008bee2151d1419dba3e07248dfb096 75 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 10-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 VF_A1040 5008bee2151d1419dba3e07248dfb096 75 SUPERFAMILY SSF52833 2 68 1.14E-13 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1202 2bc352dacb35640c8f8970cf37408a8b 758 SUPERFAMILY SSF48168 10 221 4.71E-73 T 10-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VF_1202 2bc352dacb35640c8f8970cf37408a8b 758 SUPERFAMILY SSF51998 222 740 2.66E-166 T 10-10-2018 VF_1202 2bc352dacb35640c8f8970cf37408a8b 758 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 142 219 1.4E-11 T 10-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VF_1202 2bc352dacb35640c8f8970cf37408a8b 758 Gene3D G3DSA:3.20.70.20 78 741 6.6E-157 T 10-10-2018 VF_1202 2bc352dacb35640c8f8970cf37408a8b 758 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 444 4.4E-39 T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VF_1202 2bc352dacb35640c8f8970cf37408a8b 758 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 562 4.4E-39 T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VF_1202 2bc352dacb35640c8f8970cf37408a8b 758 PRINTS PR01183 Ribonucleotide reductase large chain signature 473 496 4.4E-39 T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VF_1202 2bc352dacb35640c8f8970cf37408a8b 758 PRINTS PR01183 Ribonucleotide reductase large chain signature 610 637 4.4E-39 T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VF_1202 2bc352dacb35640c8f8970cf37408a8b 758 PRINTS PR01183 Ribonucleotide reductase large chain signature 298 317 4.4E-39 T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VF_1202 2bc352dacb35640c8f8970cf37408a8b 758 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 533 4.4E-39 T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VF_1202 2bc352dacb35640c8f8970cf37408a8b 758 Pfam PF03477 ATP cone domain 6 92 5.0E-17 T 10-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 VF_1202 2bc352dacb35640c8f8970cf37408a8b 758 Pfam PF02867 Ribonucleotide reductase, barrel domain 223 731 3.3E-121 T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VF_1202 2bc352dacb35640c8f8970cf37408a8b 758 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 599 621 - T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VF_1202 2bc352dacb35640c8f8970cf37408a8b 758 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 145 735 4.3E-177 T 10-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VF_1578 c900f651203e28b6b8517a5f78bd5b99 155 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 53 1.3E-14 T 10-10-2018 VF_1578 c900f651203e28b6b8517a5f78bd5b99 155 SUPERFAMILY SSF54909 66 155 1.14E-21 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel VF_1578 c900f651203e28b6b8517a5f78bd5b99 155 SUPERFAMILY SSF46785 5 65 1.05E-15 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1578 c900f651203e28b6b8517a5f78bd5b99 155 Gene3D G3DSA:3.30.70.920 59 143 7.4E-25 T 10-10-2018 VF_1578 c900f651203e28b6b8517a5f78bd5b99 155 SMART SM00344 6 115 4.6E-42 T 10-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VF_1578 c900f651203e28b6b8517a5f78bd5b99 155 Pfam PF01037 Lrp/AsnC ligand binding domain 72 145 9.0E-23 T 10-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VF_1578 c900f651203e28b6b8517a5f78bd5b99 155 Gene3D G3DSA:1.10.10.10 7 58 4.9E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1578 c900f651203e28b6b8517a5f78bd5b99 155 ProSitePatterns PS00519 AsnC-type HTH domain signature. 24 50 - T 10-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VF_1578 c900f651203e28b6b8517a5f78bd5b99 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 4.1E-12 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VF_1578 c900f651203e28b6b8517a5f78bd5b99 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 4.1E-12 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VF_1578 c900f651203e28b6b8517a5f78bd5b99 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 4.1E-12 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VF_0669 b006c38973b9a2ffd5128be7ac971bdf 156 Gene3D G3DSA:2.60.120.370 1 155 8.0E-48 T 10-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily VF_0669 b006c38973b9a2ffd5128be7ac971bdf 156 SUPERFAMILY SSF51197 1 155 2.28E-48 T 10-10-2018 VF_0669 b006c38973b9a2ffd5128be7ac971bdf 156 Pfam PF04074 Domain of unknown function (DUF386) 1 151 8.6E-47 T 10-10-2018 IPR004375 YhcH/YjgK/YiaL family VF_0669 b006c38973b9a2ffd5128be7ac971bdf 156 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 154 7.3E-48 T 10-10-2018 IPR004375 YhcH/YjgK/YiaL family VF_A0815 3566b64ad3f390146839367a65eb2c6f 189 SUPERFAMILY SSF48150 4 186 5.76E-81 T 10-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 VF_A0815 3566b64ad3f390146839367a65eb2c6f 189 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 4 184 1.1E-71 T 10-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 VF_A0815 3566b64ad3f390146839367a65eb2c6f 189 Gene3D G3DSA:1.10.340.30 3 189 1.8E-85 T 10-10-2018 VF_A0815 3566b64ad3f390146839367a65eb2c6f 189 Pfam PF03352 Methyladenine glycosylase 8 183 1.8E-81 T 10-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 VF_A0447 4b00497c9007332054f9ac011df5d051 542 Pfam PF00672 HAMP domain 214 261 1.0E-8 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0447 4b00497c9007332054f9ac011df5d051 542 SMART SM00304 213 265 3.0E-11 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0447 4b00497c9007332054f9ac011df5d051 542 SUPERFAMILY SSF58104 233 542 4.58E-70 T 10-10-2018 VF_A0447 4b00497c9007332054f9ac011df5d051 542 Gene3D G3DSA:1.10.287.950 213 542 2.7E-70 T 10-10-2018 VF_A0447 4b00497c9007332054f9ac011df5d051 542 SMART SM00283 280 541 1.0E-64 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0447 4b00497c9007332054f9ac011df5d051 542 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 346 508 3.3E-41 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0447 4b00497c9007332054f9ac011df5d051 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 190 210 4.7E-20 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0447 4b00497c9007332054f9ac011df5d051 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 378 405 4.7E-20 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0447 4b00497c9007332054f9ac011df5d051 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 407 436 4.7E-20 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_0964 9046b558287ccaae2e3975f2d6cafbf2 252 SMART SM00028 170 203 16.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0964 9046b558287ccaae2e3975f2d6cafbf2 252 SMART SM00028 206 239 0.2 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0964 9046b558287ccaae2e3975f2d6cafbf2 252 SUPERFAMILY SSF48452 133 245 9.05E-13 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0964 9046b558287ccaae2e3975f2d6cafbf2 252 Gene3D G3DSA:1.25.40.10 132 252 5.7E-25 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0964 9046b558287ccaae2e3975f2d6cafbf2 252 Pfam PF16331 TolA binding protein trimerisation 47 111 1.3E-22 T 10-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 VF_0964 9046b558287ccaae2e3975f2d6cafbf2 252 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 6 252 19.356 T 10-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 VF_0964 9046b558287ccaae2e3975f2d6cafbf2 252 Pfam PF13432 Tetratricopeptide repeat 144 195 6.3E-6 T 10-10-2018 VF_0964 9046b558287ccaae2e3975f2d6cafbf2 252 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 133 249 6.9E-37 T 10-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal VF_0964 9046b558287ccaae2e3975f2d6cafbf2 252 Pfam PF13174 Tetratricopeptide repeat 207 239 2.4E-7 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0964 9046b558287ccaae2e3975f2d6cafbf2 252 Gene3D G3DSA:1.20.5.110 44 120 8.4E-22 T 10-10-2018 VF_1452 9a7964e6005c7884bcbe7ce879efac17 489 TIGRFAM TIGR00797 matE: MATE efflux family protein 27 405 1.6E-58 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_1452 9a7964e6005c7884bcbe7ce879efac17 489 Pfam PF01554 MatE 26 184 2.2E-25 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_1452 9a7964e6005c7884bcbe7ce879efac17 489 Pfam PF01554 MatE 243 403 2.5E-18 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_1452 9a7964e6005c7884bcbe7ce879efac17 489 PIRSF PIRSF006603 2 447 2.2E-83 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_1709 191a4b4f2775a9620512ea53d5d74415 289 Gene3D G3DSA:3.40.50.1820 4 280 6.4E-48 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_1709 191a4b4f2775a9620512ea53d5d74415 289 SUPERFAMILY SSF53474 5 284 1.74E-46 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_1709 191a4b4f2775a9620512ea53d5d74415 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 56 71 2.5E-6 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_1709 191a4b4f2775a9620512ea53d5d74415 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 2.5E-6 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_1709 191a4b4f2775a9620512ea53d5d74415 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 116 129 2.5E-6 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_1709 191a4b4f2775a9620512ea53d5d74415 289 Pfam PF00561 alpha/beta hydrolase fold 29 158 2.0E-21 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_0014 ca1f1dc5e3dea05be16dc8f8286243bf 415 SUPERFAMILY SSF53383 18 407 3.75E-61 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_0014 ca1f1dc5e3dea05be16dc8f8286243bf 415 Pfam PF00155 Aminotransferase class I and II 53 397 6.3E-25 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VF_0014 ca1f1dc5e3dea05be16dc8f8286243bf 415 Gene3D G3DSA:3.40.640.10 1 415 2.0E-145 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_0989 8f4303769cbc638e059e74cfe72f6042 631 SUPERFAMILY SSF55073 472 623 8.63E-38 T 10-10-2018 IPR029787 Nucleotide cyclase VF_0989 8f4303769cbc638e059e74cfe72f6042 631 Gene3D G3DSA:3.30.450.20 336 470 2.4E-29 T 10-10-2018 VF_0989 8f4303769cbc638e059e74cfe72f6042 631 Gene3D G3DSA:3.30.450.20 72 204 1.4E-38 T 10-10-2018 VF_0989 8f4303769cbc638e059e74cfe72f6042 631 SMART SM00267 456 622 5.3E-40 T 10-10-2018 IPR000160 GGDEF domain VF_0989 8f4303769cbc638e059e74cfe72f6042 631 Pfam PF02743 Cache domain 40 290 3.9E-13 T 10-10-2018 IPR033479 Double Cache domain 1 VF_0989 8f4303769cbc638e059e74cfe72f6042 631 Pfam PF00990 Diguanylate cyclase, GGDEF domain 469 618 2.1E-34 T 10-10-2018 IPR000160 GGDEF domain VF_0989 8f4303769cbc638e059e74cfe72f6042 631 SMART SM00091 342 412 8.6E-4 T 10-10-2018 IPR000014 PAS domain VF_0989 8f4303769cbc638e059e74cfe72f6042 631 SUPERFAMILY SSF103190 206 290 1.02E-16 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_0989 8f4303769cbc638e059e74cfe72f6042 631 SMART SM00086 414 456 2.0E-6 T 10-10-2018 IPR001610 PAC motif VF_0989 8f4303769cbc638e059e74cfe72f6042 631 Pfam PF13426 PAS domain 354 455 3.0E-12 T 10-10-2018 IPR000014 PAS domain VF_0989 8f4303769cbc638e059e74cfe72f6042 631 SUPERFAMILY SSF55785 355 456 4.36E-24 T 10-10-2018 IPR035965 PAS domain superfamily VF_0989 8f4303769cbc638e059e74cfe72f6042 631 Gene3D G3DSA:3.30.450.20 206 299 8.9E-14 T 10-10-2018 VF_0989 8f4303769cbc638e059e74cfe72f6042 631 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 354 461 4.7E-18 T 10-10-2018 IPR000014 PAS domain VF_0989 8f4303769cbc638e059e74cfe72f6042 631 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 465 620 1.3E-39 T 10-10-2018 IPR000160 GGDEF domain VF_0989 8f4303769cbc638e059e74cfe72f6042 631 SUPERFAMILY SSF103190 37 204 1.65E-46 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_0989 8f4303769cbc638e059e74cfe72f6042 631 Gene3D G3DSA:3.30.70.270 471 630 2.5E-43 T 10-10-2018 VF_1238 ecec568826133e06cd457a676148faa2 330 Gene3D G3DSA:2.40.50.630 262 325 1.9E-108 T 10-10-2018 VF_1238 ecec568826133e06cd457a676148faa2 330 Gene3D G3DSA:3.40.630.10 25 261 1.9E-108 T 10-10-2018 VF_1238 ecec568826133e06cd457a676148faa2 330 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 330 125.36 T 10-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 VF_1238 ecec568826133e06cd457a676148faa2 330 PIRSF PIRSF017020 1 330 7.8E-129 T 10-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 VF_1238 ecec568826133e06cd457a676148faa2 330 SUPERFAMILY SSF53187 6 328 7.94E-75 T 10-10-2018 VF_1238 ecec568826133e06cd457a676148faa2 330 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 48 329 3.5E-49 T 10-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 VF_2030 fcec461374868ccd38137d05b8393fc1 184 Pfam PF16473 3' exoribonuclease, RNase T-like 3 174 1.8E-52 T 10-10-2018 IPR033390 3'-5' exoribonuclease Rv2179c-like domain VF_2030 fcec461374868ccd38137d05b8393fc1 184 SUPERFAMILY SSF53098 4 178 1.21E-20 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_2030 fcec461374868ccd38137d05b8393fc1 184 Gene3D G3DSA:3.30.420.10 2 182 1.8E-11 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_0205 a3427dc1c30cce10864bd635c715571e 548 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 10-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VF_0205 a3427dc1c30cce10864bd635c715571e 548 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 10-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VF_0205 a3427dc1c30cce10864bd635c715571e 548 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 10-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VF_0205 a3427dc1c30cce10864bd635c715571e 548 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 10-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VF_0205 a3427dc1c30cce10864bd635c715571e 548 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 10-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VF_0205 a3427dc1c30cce10864bd635c715571e 548 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 525 1.3E-94 T 10-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 VF_0205 a3427dc1c30cce10864bd635c715571e 548 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 10-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VF_0205 a3427dc1c30cce10864bd635c715571e 548 Gene3D G3DSA:1.10.560.10 8 521 2.0E-234 T 10-10-2018 IPR027413 GroEL-like equatorial domain superfamily VF_0205 a3427dc1c30cce10864bd635c715571e 548 SUPERFAMILY SSF52029 185 376 2.44E-80 T 10-10-2018 IPR027409 GroEL-like apical domain superfamily VF_0205 a3427dc1c30cce10864bd635c715571e 548 SUPERFAMILY SSF48592 7 521 6.64E-76 T 10-10-2018 IPR027413 GroEL-like equatorial domain superfamily VF_0205 a3427dc1c30cce10864bd635c715571e 548 Hamap MF_00600 60 kDa chaperonin [groL]. 2 547 41.274 T 10-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VF_0205 a3427dc1c30cce10864bd635c715571e 548 Gene3D G3DSA:3.50.7.10 192 372 2.0E-234 T 10-10-2018 IPR027409 GroEL-like apical domain superfamily VF_0205 a3427dc1c30cce10864bd635c715571e 548 SUPERFAMILY SSF54849 137 203 3.43E-24 T 10-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily VF_0205 a3427dc1c30cce10864bd635c715571e 548 Gene3D G3DSA:3.30.260.10 136 410 2.0E-234 T 10-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily VF_0205 a3427dc1c30cce10864bd635c715571e 548 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 2.9E-251 T 10-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VF_0202 84f32604d59b4b32dd824f4638596819 510 Gene3D G3DSA:3.40.720.10 6 508 9.1E-210 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VF_0202 84f32604d59b4b32dd824f4638596819 510 SUPERFAMILY SSF53649 5 509 8.24E-74 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_0202 84f32604d59b4b32dd824f4638596819 510 PIRSF PIRSF001492 1 510 6.4E-201 T 10-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_0202 84f32604d59b4b32dd824f4638596819 510 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 5 510 49.128 T 10-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_0202 84f32604d59b4b32dd824f4638596819 510 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 5 509 5.2E-226 T 10-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_0202 84f32604d59b4b32dd824f4638596819 510 Pfam PF01676 Metalloenzyme superfamily 5 494 1.3E-79 T 10-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 VF_0202 84f32604d59b4b32dd824f4638596819 510 Gene3D G3DSA:3.40.1450.10 78 310 9.1E-210 T 10-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_0202 84f32604d59b4b32dd824f4638596819 510 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 83 297 2.6E-81 T 10-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_0202 84f32604d59b4b32dd824f4638596819 510 SUPERFAMILY SSF64158 78 308 1.15E-81 T 10-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_0404 00f4c88c900fb5f138ba23718e2ae21a 129 Gene3D G3DSA:3.30.1330.40 1 129 2.4E-48 T 10-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VF_0404 00f4c88c900fb5f138ba23718e2ae21a 129 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 127 4.0E-53 T 10-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 VF_0404 00f4c88c900fb5f138ba23718e2ae21a 129 Pfam PF01042 Endoribonuclease L-PSP 8 127 8.3E-45 T 10-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 VF_0404 00f4c88c900fb5f138ba23718e2ae21a 129 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 104 122 - T 10-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 VF_0404 00f4c88c900fb5f138ba23718e2ae21a 129 SUPERFAMILY SSF55298 2 128 1.29E-44 T 10-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VF_A0025 3cc2532a94507c116feab6064d16632d 151 Pfam PF12802 MarR family 40 99 5.4E-13 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A0025 3cc2532a94507c116feab6064d16632d 151 Gene3D G3DSA:1.10.10.10 4 151 3.6E-29 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0025 3cc2532a94507c116feab6064d16632d 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 91 5.3E-5 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A0025 3cc2532a94507c116feab6064d16632d 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 111 5.3E-5 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A0025 3cc2532a94507c116feab6064d16632d 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 125 145 5.3E-5 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A0025 3cc2532a94507c116feab6064d16632d 151 ProSitePatterns PS01117 MarR-type HTH domain signature. 74 108 - T 10-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site VF_A0025 3cc2532a94507c116feab6064d16632d 151 SUPERFAMILY SSF46785 14 150 6.17E-27 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0025 3cc2532a94507c116feab6064d16632d 151 SMART SM00347 35 135 2.0E-17 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_1787 fe9dc150eacd064e1997aa23cf99ff77 284 SMART SM00342 195 278 5.5E-29 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_1787 fe9dc150eacd064e1997aa23cf99ff77 284 Pfam PF12833 Helix-turn-helix domain 201 279 1.0E-22 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_1787 fe9dc150eacd064e1997aa23cf99ff77 284 SUPERFAMILY SSF46689 179 229 8.96E-9 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1787 fe9dc150eacd064e1997aa23cf99ff77 284 SUPERFAMILY SSF46689 231 281 9.86E-13 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1787 fe9dc150eacd064e1997aa23cf99ff77 284 Gene3D G3DSA:1.10.10.60 228 283 7.8E-19 T 10-10-2018 VF_1787 fe9dc150eacd064e1997aa23cf99ff77 284 Gene3D G3DSA:1.10.10.60 177 227 5.5E-14 T 10-10-2018 VF_1787 fe9dc150eacd064e1997aa23cf99ff77 284 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 232 274 - T 10-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VF_1787 fe9dc150eacd064e1997aa23cf99ff77 284 SUPERFAMILY SSF51215 28 100 5.1E-6 T 10-10-2018 IPR037923 Transcription regulator HTH-like VF_2533 e13cf84b0a223558ad2904422c050e14 181 SUPERFAMILY SSF51161 5 176 5.96E-43 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_2533 e13cf84b0a223558ad2904422c050e14 181 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 130 5.8E-7 T 10-10-2018 IPR001451 Hexapeptide repeat VF_2533 e13cf84b0a223558ad2904422c050e14 181 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 14 44 2.2E-4 T 10-10-2018 IPR001451 Hexapeptide repeat VF_2533 e13cf84b0a223558ad2904422c050e14 181 Gene3D G3DSA:2.160.10.10 1 181 1.7E-54 T 10-10-2018 VF_1756 6c9507b02d19c134157e8b3e7eba1e58 389 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 387 36.94 T 10-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 VF_1756 6c9507b02d19c134157e8b3e7eba1e58 389 SMART SM00028 180 213 28.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1756 6c9507b02d19c134157e8b3e7eba1e58 389 SMART SM00028 214 247 12.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1756 6c9507b02d19c134157e8b3e7eba1e58 389 SMART SM00028 35 68 460.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1756 6c9507b02d19c134157e8b3e7eba1e58 389 SMART SM00028 107 140 350.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1756 6c9507b02d19c134157e8b3e7eba1e58 389 SMART SM00028 69 102 93.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1756 6c9507b02d19c134157e8b3e7eba1e58 389 Gene3D G3DSA:1.25.40.10 29 176 3.0E-15 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1756 6c9507b02d19c134157e8b3e7eba1e58 389 Gene3D G3DSA:1.25.40.10 177 343 2.9E-9 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1756 6c9507b02d19c134157e8b3e7eba1e58 389 Pfam PF13176 Tetratricopeptide repeat 71 94 0.011 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1756 6c9507b02d19c134157e8b3e7eba1e58 389 SUPERFAMILY SSF81901 39 255 3.66E-14 T 10-10-2018 VF_1756 6c9507b02d19c134157e8b3e7eba1e58 389 Pfam PF13432 Tetratricopeptide repeat 113 170 0.018 T 10-10-2018 VF_1598 e60e9743ebde52da670789bae0f97dd4 845 Gene3D G3DSA:3.10.50.10 473 548 8.0E-158 T 10-10-2018 IPR029070 Chitinase insertion domain superfamily VF_1598 e60e9743ebde52da670789bae0f97dd4 845 Gene3D G3DSA:3.20.20.80 168 574 8.0E-158 T 10-10-2018 VF_1598 e60e9743ebde52da670789bae0f97dd4 845 Pfam PF08329 Chitinase A, N-terminal domain 23 162 6.6E-56 T 10-10-2018 IPR013540 Chitinase A N-terminal GO:0004568|GO:0006032 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VF_1598 e60e9743ebde52da670789bae0f97dd4 845 SUPERFAMILY SSF81296 24 139 3.69E-29 T 10-10-2018 IPR014756 Immunoglobulin E-set VF_1598 e60e9743ebde52da670789bae0f97dd4 845 SUPERFAMILY SSF51445 141 585 3.92E-91 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_1598 e60e9743ebde52da670789bae0f97dd4 845 SUPERFAMILY SSF49299 695 784 7.45E-5 T 10-10-2018 IPR035986 PKD domain superfamily VF_1598 e60e9743ebde52da670789bae0f97dd4 845 Pfam PF00704 Glycosyl hydrolases family 18 168 572 6.9E-88 T 10-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 VF_1598 e60e9743ebde52da670789bae0f97dd4 845 SMART SM00495 794 839 2.7E-14 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1598 e60e9743ebde52da670789bae0f97dd4 845 SMART SM00089 599 689 8.8E-9 T 10-10-2018 IPR022409 PKD/Chitinase domain VF_1598 e60e9743ebde52da670789bae0f97dd4 845 SMART SM00089 51 140 2.9 T 10-10-2018 IPR022409 PKD/Chitinase domain VF_1598 e60e9743ebde52da670789bae0f97dd4 845 SMART SM00089 698 785 3.2 T 10-10-2018 IPR022409 PKD/Chitinase domain VF_1598 e60e9743ebde52da670789bae0f97dd4 845 SUPERFAMILY SSF54556 468 543 7.33E-18 T 10-10-2018 IPR029070 Chitinase insertion domain superfamily VF_1598 e60e9743ebde52da670789bae0f97dd4 845 Gene3D G3DSA:2.60.40.10 595 691 1.5E-20 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_1598 e60e9743ebde52da670789bae0f97dd4 845 Gene3D G3DSA:2.60.40.10 692 782 1.1E-11 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_1598 e60e9743ebde52da670789bae0f97dd4 845 ProSitePatterns PS01095 Chitinases family 18 active site. 314 322 - T 10-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VF_1598 e60e9743ebde52da670789bae0f97dd4 845 SUPERFAMILY SSF49299 595 687 4.58E-9 T 10-10-2018 IPR035986 PKD domain superfamily VF_1598 e60e9743ebde52da670789bae0f97dd4 845 SUPERFAMILY SSF51055 789 840 6.28E-15 T 10-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1598 e60e9743ebde52da670789bae0f97dd4 845 Gene3D G3DSA:2.10.10.20 793 837 4.2E-18 T 10-10-2018 VF_1598 e60e9743ebde52da670789bae0f97dd4 845 Gene3D G3DSA:2.60.40.10 8 137 1.6E-36 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_1598 e60e9743ebde52da670789bae0f97dd4 845 SMART SM00636 165 572 4.2E-149 T 10-10-2018 IPR011583 Chitinase II GO:0008061 VF_A0829 2b399d5b83dcde7e6f489b43acedc85c 498 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 36 438 1.9E-97 T 10-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VF_A0829 2b399d5b83dcde7e6f489b43acedc85c 498 Gene3D G3DSA:1.20.1730.10 12 496 1.4E-97 T 10-10-2018 IPR038377 Sodium/glucose symporter superfamily VF_A0829 2b399d5b83dcde7e6f489b43acedc85c 498 Pfam PF00474 Sodium:solute symporter family 36 438 1.0E-105 T 10-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VF_A0829 2b399d5b83dcde7e6f489b43acedc85c 498 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 7 489 3.1E-214 T 10-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 VF_0990 683b9aeaebdad6cae54a9ad902650476 319 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 167 179 - T 10-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 VF_0990 683b9aeaebdad6cae54a9ad902650476 319 SUPERFAMILY SSF56112 29 298 4.99E-50 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily VF_0990 683b9aeaebdad6cae54a9ad902650476 319 Gene3D G3DSA:1.10.510.10 127 318 1.2E-33 T 10-10-2018 VF_0990 683b9aeaebdad6cae54a9ad902650476 319 Gene3D G3DSA:3.30.200.20 30 125 1.0E-13 T 10-10-2018 VF_0990 683b9aeaebdad6cae54a9ad902650476 319 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 45 74 - T 10-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 VF_0990 683b9aeaebdad6cae54a9ad902650476 319 SMART SM00220 39 295 2.8E-23 T 10-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 VF_0990 683b9aeaebdad6cae54a9ad902650476 319 Pfam PF00069 Protein kinase domain 39 291 5.2E-35 T 10-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 VF_0676 3180b307b8c969a0b45e478cb06f7039 287 Pfam PF01774 UreD urease accessory protein 53 259 7.1E-49 T 10-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 VF_0676 3180b307b8c969a0b45e478cb06f7039 287 Hamap MF_01384 Urease accessory protein UreD [ureD]. 11 271 28.152 T 10-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 VF_1607 8515760d2c9ab97e59165c3affdff60c 217 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 96 112 - T 10-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VF_1607 8515760d2c9ab97e59165c3affdff60c 217 Gene3D G3DSA:1.10.286.10 1 84 9.4E-37 T 10-10-2018 VF_1607 8515760d2c9ab97e59165c3affdff60c 217 SUPERFAMILY SSF55620 8 217 1.41E-75 T 10-10-2018 VF_1607 8515760d2c9ab97e59165c3affdff60c 217 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 144 154 - T 10-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VF_1607 8515760d2c9ab97e59165c3affdff60c 217 Pfam PF01227 GTP cyclohydrolase I 38 216 3.0E-64 T 10-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VF_1607 8515760d2c9ab97e59165c3affdff60c 217 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 34 217 34.125 T 10-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VF_1607 8515760d2c9ab97e59165c3affdff60c 217 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 38 216 6.6E-81 T 10-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VF_1607 8515760d2c9ab97e59165c3affdff60c 217 Gene3D G3DSA:3.30.1130.10 85 217 2.0E-52 T 10-10-2018 VF_1101 dea8a50904e2c194a908eb3d203ffe9f 114 SMART SM00507 19 74 1.2E-5 T 10-10-2018 IPR003615 HNH nuclease VF_1101 dea8a50904e2c194a908eb3d203ffe9f 114 Pfam PF01844 HNH endonuclease 31 79 7.1E-10 T 10-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 VF_0057 a1665f3c8c3ba2f6c10028be2e6c09b4 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 10 107 5.5E-37 T 10-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 VF_0057 a1665f3c8c3ba2f6c10028be2e6c09b4 108 Pfam PF00085 Thioredoxin 5 106 3.2E-32 T 10-10-2018 IPR013766 Thioredoxin domain GO:0045454 VF_0057 a1665f3c8c3ba2f6c10028be2e6c09b4 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 10-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VF_0057 a1665f3c8c3ba2f6c10028be2e6c09b4 108 SUPERFAMILY SSF52833 3 107 7.95E-38 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_0057 a1665f3c8c3ba2f6c10028be2e6c09b4 108 PRINTS PR00421 Thioredoxin family signature 24 32 3.3E-10 T 10-10-2018 VF_0057 a1665f3c8c3ba2f6c10028be2e6c09b4 108 PRINTS PR00421 Thioredoxin family signature 72 83 3.3E-10 T 10-10-2018 VF_0057 a1665f3c8c3ba2f6c10028be2e6c09b4 108 PRINTS PR00421 Thioredoxin family signature 32 41 3.3E-10 T 10-10-2018 VF_0057 a1665f3c8c3ba2f6c10028be2e6c09b4 108 Gene3D G3DSA:3.40.30.10 1 108 3.2E-34 T 10-10-2018 VF_0057 a1665f3c8c3ba2f6c10028be2e6c09b4 108 PIRSF PIRSF000077 2 108 6.9E-42 T 10-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 VF_2461 dae19d1ee4b2a3b3bfee7386a6eb1e7b 194 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 3 194 44.106 T 10-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 VF_2461 dae19d1ee4b2a3b3bfee7386a6eb1e7b 194 SUPERFAMILY SSF117916 97 186 5.01E-22 T 10-10-2018 IPR034904 Fe-S cluster assembly domain superfamily VF_2461 dae19d1ee4b2a3b3bfee7386a6eb1e7b 194 Pfam PF01521 Iron-sulphur cluster biosynthesis 3 101 1.5E-12 T 10-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 VF_2461 dae19d1ee4b2a3b3bfee7386a6eb1e7b 194 Gene3D G3DSA:2.60.300.12 2 100 1.7E-14 T 10-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VF_2461 dae19d1ee4b2a3b3bfee7386a6eb1e7b 194 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 4 194 6.2E-96 T 10-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 VF_2461 dae19d1ee4b2a3b3bfee7386a6eb1e7b 194 SUPERFAMILY SSF89360 4 99 2.16E-21 T 10-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VF_2461 dae19d1ee4b2a3b3bfee7386a6eb1e7b 194 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 121 180 4.0E-28 T 10-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 VF_2461 dae19d1ee4b2a3b3bfee7386a6eb1e7b 194 Gene3D G3DSA:3.30.300.130 103 191 2.0E-18 T 10-10-2018 IPR034904 Fe-S cluster assembly domain superfamily VF_2461 dae19d1ee4b2a3b3bfee7386a6eb1e7b 194 Pfam PF01106 NifU-like domain 113 179 8.8E-19 T 10-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 Gene3D G3DSA:1.10.290.10 306 435 4.1E-161 T 10-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 SMART SM00436 138 233 1.9E-28 T 10-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 SMART SM00493 11 134 3.9E-26 T 10-10-2018 IPR006171 TOPRIM domain VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 Gene3D G3DSA:2.70.20.10 227 509 4.1E-161 T 10-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 Pfam PF01131 DNA topoisomerase 168 613 3.5E-110 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 TIGRFAM TIGR01056 topB: DNA topoisomerase III 10 629 4.1E-228 T 10-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 SMART SM00437 297 579 6.0E-86 T 10-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 Gene3D G3DSA:1.10.460.10 172 621 4.1E-161 T 10-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 Gene3D G3DSA:3.40.50.140 11 166 3.8E-60 T 10-10-2018 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 SUPERFAMILY SSF56712 12 625 2.35E-179 T 10-10-2018 IPR023405 DNA topoisomerase, type IA, core domain VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 340 349 4.0E-25 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 203 221 4.0E-25 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 542 556 4.0E-25 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 421 437 4.0E-25 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 108 121 4.0E-25 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 Pfam PF01751 Toprim domain 13 140 6.1E-15 T 10-10-2018 IPR006171 TOPRIM domain VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 334 349 - T 10-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 VF_1641 2bfe16dc2bb063ceb7932d5fc8d9e17c 656 Hamap MF_00953 DNA topoisomerase 3 [topB]. 11 656 61.043 T 10-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 VF_A1033 0a59f2cb97837db5322e1f3edbf5da66 378 Gene3D G3DSA:3.40.50.2000 199 345 7.3E-29 T 10-10-2018 VF_A1033 0a59f2cb97837db5322e1f3edbf5da66 378 SUPERFAMILY SSF53756 63 371 1.67E-14 T 10-10-2018 VF_A0396 7ed19553f1ac1e07dfe656818bf6d749 579 SUPERFAMILY SSF55816 362 563 3.92E-42 T 10-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_A0396 7ed19553f1ac1e07dfe656818bf6d749 579 SUPERFAMILY SSF56300 5 325 3.26E-72 T 10-10-2018 VF_A0396 7ed19553f1ac1e07dfe656818bf6d749 579 Pfam PF00149 Calcineurin-like phosphoesterase 9 245 1.5E-8 T 10-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VF_A0396 7ed19553f1ac1e07dfe656818bf6d749 579 Gene3D G3DSA:3.90.780.10 362 577 3.1E-39 T 10-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_A0396 7ed19553f1ac1e07dfe656818bf6d749 579 Pfam PF02872 5'-nucleotidase, C-terminal domain 364 531 5.8E-23 T 10-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_A0396 7ed19553f1ac1e07dfe656818bf6d749 579 Gene3D G3DSA:3.60.21.10 1 361 1.6E-80 T 10-10-2018 IPR029052 Metallo-dependent phosphatase-like VF_A0396 7ed19553f1ac1e07dfe656818bf6d749 579 PRINTS PR01607 Apyrase family signature 7 25 3.7E-15 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_A0396 7ed19553f1ac1e07dfe656818bf6d749 579 PRINTS PR01607 Apyrase family signature 228 251 3.7E-15 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_A0396 7ed19553f1ac1e07dfe656818bf6d749 579 PRINTS PR01607 Apyrase family signature 508 527 3.7E-15 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_A0396 7ed19553f1ac1e07dfe656818bf6d749 579 PRINTS PR01607 Apyrase family signature 209 226 3.7E-15 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_A0396 7ed19553f1ac1e07dfe656818bf6d749 579 PRINTS PR01607 Apyrase family signature 268 288 3.7E-15 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_A0835 a22718b0bc4ffd9e4b91006d135afcde 262 Pfam PF03649 Uncharacterised protein family (UPF0014) 12 247 8.8E-70 T 10-10-2018 IPR005226 UPF0014 family VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 Gene3D G3DSA:2.40.37.10 18 404 1.3E-148 T 10-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 PRINTS PR01181 Diaminopimelate decarboxylase signature 165 174 3.6E-29 T 10-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 PRINTS PR01181 Diaminopimelate decarboxylase signature 76 93 3.6E-29 T 10-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 PRINTS PR01181 Diaminopimelate decarboxylase signature 380 402 3.6E-29 T 10-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 PRINTS PR01181 Diaminopimelate decarboxylase signature 300 318 3.6E-29 T 10-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 Gene3D G3DSA:3.20.20.10 35 277 1.3E-148 T 10-10-2018 IPR029066 PLP-binding barrel VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 36 282 1.9E-73 T 10-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 SUPERFAMILY SSF50621 260 414 1.74E-51 T 10-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 58 76 - T 10-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 272 291 7.6E-27 T 10-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 58 76 7.6E-27 T 10-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 370 383 7.6E-27 T 10-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 78 90 7.6E-27 T 10-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 191 204 7.6E-27 T 10-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 6 412 4.9E-164 T 10-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 SUPERFAMILY SSF51419 27 284 7.41E-83 T 10-10-2018 IPR029066 PLP-binding barrel VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 16 413 41.042 T 10-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_2485 0ee1aeb00fdfc724668315d0cde5d585 417 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 31 370 7.4E-25 T 10-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 VF_1515 a762bdf82ae7ea0e21e46a2572c6fda1 482 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 323 479 2.2E-39 T 10-10-2018 IPR000160 GGDEF domain VF_1515 a762bdf82ae7ea0e21e46a2572c6fda1 482 SMART SM01079 47 243 2.4E-33 T 10-10-2018 IPR006189 CHASE domain VF_1515 a762bdf82ae7ea0e21e46a2572c6fda1 482 Gene3D G3DSA:3.30.70.270 313 481 6.7E-48 T 10-10-2018 VF_1515 a762bdf82ae7ea0e21e46a2572c6fda1 482 SMART SM00267 315 481 3.0E-49 T 10-10-2018 IPR000160 GGDEF domain VF_1515 a762bdf82ae7ea0e21e46a2572c6fda1 482 Pfam PF00990 Diguanylate cyclase, GGDEF domain 326 477 4.4E-38 T 10-10-2018 IPR000160 GGDEF domain VF_1515 a762bdf82ae7ea0e21e46a2572c6fda1 482 Pfam PF03924 CHASE domain 52 241 1.3E-27 T 10-10-2018 IPR006189 CHASE domain VF_1515 a762bdf82ae7ea0e21e46a2572c6fda1 482 Gene3D G3DSA:3.30.450.350 52 268 2.5E-9 T 10-10-2018 VF_1515 a762bdf82ae7ea0e21e46a2572c6fda1 482 SUPERFAMILY SSF55073 331 480 7.14E-42 T 10-10-2018 IPR029787 Nucleotide cyclase VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 Gene3D G3DSA:3.40.50.300 127 308 8.3E-67 T 10-10-2018 VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 SMART SM00382 157 301 7.4E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 Gene3D G3DSA:3.40.50.2300 1 119 1.2E-11 T 10-10-2018 VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 349 358 - T 10-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 468 488 1.2E-9 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 451 468 1.2E-9 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 Gene3D G3DSA:1.10.10.60 421 489 9.4E-14 T 10-10-2018 VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 SUPERFAMILY SSF46689 349 488 8.51E-13 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 SUPERFAMILY SSF52172 6 182 3.17E-8 T 10-10-2018 IPR011006 CheY-like superfamily VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 Pfam PF02954 Bacterial regulatory protein, Fis family 445 485 5.2E-14 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 SUPERFAMILY SSF52540 137 378 3.66E-73 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 223 238 - T 10-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 161 174 - T 10-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 Pfam PF00158 Sigma-54 interaction domain 137 304 5.8E-73 T 10-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 Gene3D G3DSA:1.10.8.60 309 385 5.6E-26 T 10-10-2018 VF_1856 c9db9cf12a1689cadfa9fd1a890395f5 493 Pfam PF06490 Flagellar regulatory protein FleQ 6 115 8.0E-33 T 10-10-2018 IPR010518 Flagellar regulatory FleQ VF_2092 b5244b0b32e3b20d6467945d8067bc76 205 SUPERFAMILY SSF89069 4 66 2.35E-17 T 10-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 VF_2092 b5244b0b32e3b20d6467945d8067bc76 205 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 134 185 1.9E-19 T 10-10-2018 IPR005573 Anti sigma-E protein RseA, C-terminal VF_2092 b5244b0b32e3b20d6467945d8067bc76 205 Gene3D G3DSA:1.10.10.880 2 66 5.0E-19 T 10-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 VF_2092 b5244b0b32e3b20d6467945d8067bc76 205 PIRSF PIRSF016938 1 189 5.2E-35 T 10-10-2018 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0016989 VF_2092 b5244b0b32e3b20d6467945d8067bc76 205 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 89 3.8E-30 T 10-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 VF_A0930 7916842878d3d589f24bdda3130d9877 374 SUPERFAMILY SSF55031 177 281 4.45E-23 T 10-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VF_A0930 7916842878d3d589f24bdda3130d9877 374 PIRSF PIRSF037238 1 373 3.3E-153 T 10-10-2018 IPR017150 Peptidase M20, glutamate carboxypeptidase VF_A0930 7916842878d3d589f24bdda3130d9877 374 Gene3D G3DSA:3.40.630.10 12 361 1.2E-104 T 10-10-2018 VF_A0930 7916842878d3d589f24bdda3130d9877 374 SUPERFAMILY SSF53187 2 373 3.71E-42 T 10-10-2018 VF_A0930 7916842878d3d589f24bdda3130d9877 374 Gene3D G3DSA:3.30.70.360 177 286 1.2E-104 T 10-10-2018 VF_A0930 7916842878d3d589f24bdda3130d9877 374 Pfam PF07687 Peptidase dimerisation domain 175 272 7.5E-20 T 10-10-2018 IPR011650 Peptidase M20, dimerisation domain VF_A0930 7916842878d3d589f24bdda3130d9877 374 Pfam PF01546 Peptidase family M20/M25/M40 74 370 1.4E-25 T 10-10-2018 IPR002933 Peptidase M20 GO:0016787 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 SMART SM00304 370 423 1.9E-13 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 SUPERFAMILY SSF52172 715 839 5.41E-41 T 10-10-2018 IPR011006 CheY-like superfamily VF_2138 f997f800475dd399b106c215a3bf72ae 1126 SMART SM00448 719 832 1.4E-43 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 567 676 9.3E-28 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_2138 f997f800475dd399b106c215a3bf72ae 1126 Gene3D G3DSA:3.30.565.10 522 682 4.1E-45 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2138 f997f800475dd399b106c215a3bf72ae 1126 SUPERFAMILY SSF158472 371 422 2.35E-11 T 10-10-2018 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 Pfam PF00072 Response regulator receiver domain 722 833 2.0E-30 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 SMART SM00388 452 520 3.1E-18 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 SUPERFAMILY SSF47384 439 521 4.51E-19 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 Gene3D G3DSA:3.40.50.2300 719 870 3.7E-40 T 10-10-2018 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 SMART SM00387 566 677 1.1E-37 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_2138 f997f800475dd399b106c215a3bf72ae 1126 Gene3D G3DSA:1.20.1480.50 334 429 2.2E-26 T 10-10-2018 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 Pfam PF00672 HAMP domain 371 420 6.9E-13 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 SUPERFAMILY SSF55785 855 922 1.27E-6 T 10-10-2018 IPR035965 PAS domain superfamily VF_2138 f997f800475dd399b106c215a3bf72ae 1126 SUPERFAMILY SSF55874 509 680 2.1E-46 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2138 f997f800475dd399b106c215a3bf72ae 1126 Gene3D G3DSA:3.30.450.20 871 961 2.8E-7 T 10-10-2018 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 PRINTS PR00344 Bacterial sensor protein C-terminal signature 661 674 1.9E-14 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 PRINTS PR00344 Bacterial sensor protein C-terminal signature 620 630 1.9E-14 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 PRINTS PR00344 Bacterial sensor protein C-terminal signature 602 616 1.9E-14 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 PRINTS PR00344 Bacterial sensor protein C-terminal signature 637 655 1.9E-14 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 Gene3D G3DSA:1.10.287.130 435 521 1.6E-21 T 10-10-2018 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 Pfam PF00512 His Kinase A (phospho-acceptor) domain 453 520 5.0E-15 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_2138 f997f800475dd399b106c215a3bf72ae 1126 SMART SM00091 870 936 7.1E-4 T 10-10-2018 IPR000014 PAS domain VF_0455 b24a0218215772b914b8917eaa0276fe 222 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 222 149.676 T 10-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 VF_0455 b24a0218215772b914b8917eaa0276fe 222 SUPERFAMILY SSF52980 5 221 3.75E-83 T 10-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VF_0455 b24a0218215772b914b8917eaa0276fe 222 Pfam PF02976 DNA mismatch repair enzyme MutH 54 152 1.6E-32 T 10-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 VF_0455 b24a0218215772b914b8917eaa0276fe 222 Gene3D G3DSA:3.40.600.10 1 221 1.6E-56 T 10-10-2018 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily GO:0003677|GO:0004519 VF_0455 b24a0218215772b914b8917eaa0276fe 222 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 6 220 4.7E-102 T 10-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 VF_0455 b24a0218215772b914b8917eaa0276fe 222 SMART SM00927 54 152 1.4E-62 T 10-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 VF_2275 65892c44fe3f9ac1e2b50dfbbc8403db 335 Gene3D G3DSA:1.10.260.40 1 59 2.1E-21 T 10-10-2018 VF_2275 65892c44fe3f9ac1e2b50dfbbc8403db 335 Gene3D G3DSA:3.40.50.2300 160 289 1.0E-81 T 10-10-2018 VF_2275 65892c44fe3f9ac1e2b50dfbbc8403db 335 Gene3D G3DSA:3.40.50.2300 64 307 1.0E-81 T 10-10-2018 VF_2275 65892c44fe3f9ac1e2b50dfbbc8403db 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 10-10-2018 VF_2275 65892c44fe3f9ac1e2b50dfbbc8403db 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 47 1.9E-16 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_2275 65892c44fe3f9ac1e2b50dfbbc8403db 335 SUPERFAMILY SSF47413 1 59 2.16E-13 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_2275 65892c44fe3f9ac1e2b50dfbbc8403db 335 Pfam PF13377 Periplasmic binding protein-like domain 168 329 2.1E-40 T 10-10-2018 VF_2275 65892c44fe3f9ac1e2b50dfbbc8403db 335 SMART SM00354 1 71 5.9E-24 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_2275 65892c44fe3f9ac1e2b50dfbbc8403db 335 SUPERFAMILY SSF53822 60 332 6.09E-90 T 10-10-2018 IPR028082 Periplasmic binding protein-like I VF_1628 d5ccef59828f3708c4ee936e66244efb 781 Gene3D G3DSA:3.90.1600.10 342 451 1.2E-31 T 10-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1628 d5ccef59828f3708c4ee936e66244efb 781 SUPERFAMILY SSF56672 379 775 2.61E-120 T 10-10-2018 VF_1628 d5ccef59828f3708c4ee936e66244efb 781 ProSitePatterns PS00116 DNA polymerase family B signature. 540 548 - T 10-10-2018 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1628 d5ccef59828f3708c4ee936e66244efb 781 SUPERFAMILY SSF53098 1 383 2.02E-81 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_1628 d5ccef59828f3708c4ee936e66244efb 781 Pfam PF00136 DNA polymerase family B 370 736 1.4E-49 T 10-10-2018 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1628 d5ccef59828f3708c4ee936e66244efb 781 Gene3D G3DSA:2.40.50.590 1 142 1.5E-29 T 10-10-2018 VF_1628 d5ccef59828f3708c4ee936e66244efb 781 Pfam PF03104 DNA polymerase family B, exonuclease domain 62 290 3.8E-17 T 10-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1628 d5ccef59828f3708c4ee936e66244efb 781 Gene3D G3DSA:1.10.132.60 637 781 5.1E-60 T 10-10-2018 VF_1628 d5ccef59828f3708c4ee936e66244efb 781 Gene3D G3DSA:3.30.70.2250 34 101 1.5E-29 T 10-10-2018 VF_1628 d5ccef59828f3708c4ee936e66244efb 781 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 486 498 1.7E-10 T 10-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1628 d5ccef59828f3708c4ee936e66244efb 781 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 538 546 1.7E-10 T 10-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1628 d5ccef59828f3708c4ee936e66244efb 781 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 409 422 1.7E-10 T 10-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1628 d5ccef59828f3708c4ee936e66244efb 781 Gene3D G3DSA:3.90.1600.30 510 633 2.5E-8 T 10-10-2018 VF_1628 d5ccef59828f3708c4ee936e66244efb 781 Gene3D G3DSA:3.30.420.10 149 341 1.3E-69 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_1628 d5ccef59828f3708c4ee936e66244efb 781 Gene3D G3DSA:1.10.287.690 462 508 1.3E-25 T 10-10-2018 VF_1628 d5ccef59828f3708c4ee936e66244efb 781 SMART SM00486 146 552 1.8E-73 T 10-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_B0040 3e2ca475580c3b792076ea1a84c4a997 226 SUPERFAMILY SSF54427 88 225 7.45E-41 T 10-10-2018 IPR032710 NTF2-like domain superfamily VF_B0040 3e2ca475580c3b792076ea1a84c4a997 226 Pfam PF04335 VirB8 protein 16 223 1.4E-49 T 10-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 VF_B0040 3e2ca475580c3b792076ea1a84c4a997 226 Gene3D G3DSA:3.10.450.230 87 225 6.9E-47 T 10-10-2018 VF_B0040 3e2ca475580c3b792076ea1a84c4a997 226 PIRSF PIRSF003299 1 226 1.1E-98 T 10-10-2018 IPR026264 Type IV secretion system protein VirB8/PtlE GO:0030255 VF_A0056 ef59d10b7e253388388c9ea575930505 438 SUPERFAMILY SSF55073 272 427 1.18E-43 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0056 ef59d10b7e253388388c9ea575930505 438 Pfam PF05227 CHASE3 domain 42 175 3.4E-40 T 10-10-2018 IPR007891 CHASE3 VF_A0056 ef59d10b7e253388388c9ea575930505 438 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 265 426 4.1E-42 T 10-10-2018 IPR000160 GGDEF domain VF_A0056 ef59d10b7e253388388c9ea575930505 438 SMART SM00267 256 428 9.1E-53 T 10-10-2018 IPR000160 GGDEF domain VF_A0056 ef59d10b7e253388388c9ea575930505 438 Gene3D G3DSA:1.20.1440.210 47 174 1.9E-35 T 10-10-2018 VF_A0056 ef59d10b7e253388388c9ea575930505 438 Pfam PF00990 Diguanylate cyclase, GGDEF domain 267 423 3.2E-47 T 10-10-2018 IPR000160 GGDEF domain VF_A0056 ef59d10b7e253388388c9ea575930505 438 Gene3D G3DSA:3.30.70.270 262 438 1.3E-53 T 10-10-2018 VF_A0553 f74cef1ca4f5b782cb049616fd83d51a 460 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 167 175 - T 10-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VF_A0553 f74cef1ca4f5b782cb049616fd83d51a 460 Gene3D G3DSA:3.40.50.300 10 227 3.6E-75 T 10-10-2018 VF_A0553 f74cef1ca4f5b782cb049616fd83d51a 460 Pfam PF00270 DEAD/DEAH box helicase 40 211 2.9E-48 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_A0553 f74cef1ca4f5b782cb049616fd83d51a 460 Gene3D G3DSA:3.40.50.300 229 440 8.5E-51 T 10-10-2018 VF_A0553 f74cef1ca4f5b782cb049616fd83d51a 460 SMART SM00487 35 238 7.2E-53 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_A0553 f74cef1ca4f5b782cb049616fd83d51a 460 Pfam PF00271 Helicase conserved C-terminal domain 250 356 2.7E-29 T 10-10-2018 IPR001650 Helicase, C-terminal VF_A0553 f74cef1ca4f5b782cb049616fd83d51a 460 SUPERFAMILY SSF52540 87 375 3.34E-69 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0553 f74cef1ca4f5b782cb049616fd83d51a 460 SMART SM00490 275 356 7.8E-31 T 10-10-2018 IPR001650 Helicase, C-terminal VF_0698 253cf3e5c4b9161dbb748ffd94ae9899 662 SUPERFAMILY SSF58104 353 661 5.89E-59 T 10-10-2018 VF_0698 253cf3e5c4b9161dbb748ffd94ae9899 662 Gene3D G3DSA:1.10.287.950 331 662 9.7E-56 T 10-10-2018 VF_0698 253cf3e5c4b9161dbb748ffd94ae9899 662 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 470 628 2.8E-39 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0698 253cf3e5c4b9161dbb748ffd94ae9899 662 SMART SM00283 404 661 2.8E-40 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0698 253cf3e5c4b9161dbb748ffd94ae9899 662 Pfam PF08376 Nitrate and nitrite sensing 58 294 5.1E-32 T 10-10-2018 IPR013587 Nitrate/nitrite sensing protein VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 Pfam PF08238 Sel1 repeat 29 56 0.41 T 10-10-2018 IPR006597 Sel1-like repeat VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 Pfam PF08238 Sel1 repeat 161 195 1.8E-4 T 10-10-2018 IPR006597 Sel1-like repeat VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 Pfam PF08238 Sel1 repeat 126 160 5.1E-6 T 10-10-2018 IPR006597 Sel1-like repeat VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 Pfam PF08238 Sel1 repeat 58 90 2.3E-5 T 10-10-2018 IPR006597 Sel1-like repeat VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 Pfam PF08238 Sel1 repeat 217 228 77.0 T 10-10-2018 IPR006597 Sel1-like repeat VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 Gene3D G3DSA:1.25.40.10 18 107 9.7E-19 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 SUPERFAMILY SSF81901 29 203 9.59E-38 T 10-10-2018 VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 Pfam PF00515 Tetratricopeptide repeat 95 125 1.0E-6 T 10-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 SMART SM00028 93 126 2.2E-5 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 SMART SM00028 25 58 390.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 Gene3D G3DSA:1.25.40.10 108 231 3.3E-31 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 SMART SM00671 125 160 5.5E-8 T 10-10-2018 IPR006597 Sel1-like repeat VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 SMART SM00671 57 92 2.9E-6 T 10-10-2018 IPR006597 Sel1-like repeat VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 SMART SM00671 93 124 0.044 T 10-10-2018 IPR006597 Sel1-like repeat VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 SMART SM00671 161 196 4.3E-5 T 10-10-2018 IPR006597 Sel1-like repeat VF_1540 587adb1f0ee9a1c35a1204b71fa7979c 231 SMART SM00671 25 56 5.4 T 10-10-2018 IPR006597 Sel1-like repeat VF_A0443 e438ba480e574adfe06c54c30e6af22f 444 Gene3D G3DSA:1.20.1600.10 24 429 2.3E-39 T 10-10-2018 VF_A0443 e438ba480e574adfe06c54c30e6af22f 444 Pfam PF02321 Outer membrane efflux protein 33 213 4.3E-8 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VF_A0443 e438ba480e574adfe06c54c30e6af22f 444 Pfam PF02321 Outer membrane efflux protein 249 428 7.6E-18 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VF_A0443 e438ba480e574adfe06c54c30e6af22f 444 SUPERFAMILY SSF56954 4 430 3.4E-51 T 10-10-2018 VF_A1089 afb3d0ea2ad27cbfb512991808c2d032 295 Gene3D G3DSA:1.10.3720.10 19 284 1.2E-34 T 10-10-2018 IPR035906 MetI-like superfamily VF_A1089 afb3d0ea2ad27cbfb512991808c2d032 295 SUPERFAMILY SSF161098 23 292 1.5E-41 T 10-10-2018 IPR035906 MetI-like superfamily VF_A1089 afb3d0ea2ad27cbfb512991808c2d032 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 282 3.1E-10 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_0960 8fdae006aed99b6b60666fa017292d2e 346 Gene3D G3DSA:3.30.1150.10 248 346 1.0E-26 T 10-10-2018 VF_0960 8fdae006aed99b6b60666fa017292d2e 346 TIGRFAM TIGR02794 tolA_full: protein TolA 9 345 1.0E-79 T 10-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 VF_0960 8fdae006aed99b6b60666fa017292d2e 346 Pfam PF06519 TolA C-terminal 249 343 3.8E-29 T 10-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 VF_0960 8fdae006aed99b6b60666fa017292d2e 346 SUPERFAMILY SSF74653 257 346 1.49E-19 T 10-10-2018 VF_A0246 61e38c5a25ee48f8d4ad7dbcbc111935 621 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 418 585 2.1E-44 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0246 61e38c5a25ee48f8d4ad7dbcbc111935 621 SUPERFAMILY SSF58104 312 621 9.81E-67 T 10-10-2018 VF_A0246 61e38c5a25ee48f8d4ad7dbcbc111935 621 SMART SM00283 359 620 2.5E-63 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0246 61e38c5a25ee48f8d4ad7dbcbc111935 621 Gene3D G3DSA:1.10.287.950 292 621 5.4E-67 T 10-10-2018 VF_A0246 61e38c5a25ee48f8d4ad7dbcbc111935 621 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 373 402 7.8E-8 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0246 61e38c5a25ee48f8d4ad7dbcbc111935 621 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 486 515 7.8E-8 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_0325 99b29b92351e30c4032c704a10e83b3e 161 Gene3D G3DSA:2.40.50.870 21 161 2.3E-45 T 10-10-2018 VF_0325 99b29b92351e30c4032c704a10e83b3e 161 Pfam PF11736 Protein of unknown function (DUF3299) 27 156 7.5E-43 T 10-10-2018 IPR021727 Protein of unknown function DUF3299 VF_0435 9060d06bede361c909818f956dc63420 315 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 296 1.8E-80 T 10-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VF_0435 9060d06bede361c909818f956dc63420 315 SUPERFAMILY SSF56059 123 313 1.6E-59 T 10-10-2018 VF_0435 9060d06bede361c909818f956dc63420 315 Hamap MF_00162 Glutathione synthetase [gshB]. 1 315 179.742 T 10-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VF_0435 9060d06bede361c909818f956dc63420 315 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 120 7.5E-48 T 10-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VF_0435 9060d06bede361c909818f956dc63420 315 Gene3D G3DSA:3.30.470.20 197 300 4.4E-40 T 10-10-2018 VF_0435 9060d06bede361c909818f956dc63420 315 SUPERFAMILY SSF52440 2 122 3.16E-46 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VF_0435 9060d06bede361c909818f956dc63420 315 Gene3D G3DSA:3.30.1490.20 137 196 6.8E-30 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VF_0435 9060d06bede361c909818f956dc63420 315 TIGRFAM TIGR01380 glut_syn: glutathione synthase 2 311 2.6E-140 T 10-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VF_0435 9060d06bede361c909818f956dc63420 315 Gene3D G3DSA:3.40.50.20 1 129 1.7E-51 T 10-10-2018 VF_2373 730daca8c273f338f47e8ff909d3a3af 253 SMART SM00420 9 61 2.3E-17 T 10-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VF_2373 730daca8c273f338f47e8ff909d3a3af 253 SUPERFAMILY SSF100950 77 233 6.2E-33 T 10-10-2018 IPR037171 NagB/RpiA transferase-like VF_2373 730daca8c273f338f47e8ff909d3a3af 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 27 41 9.2E-8 T 10-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VF_2373 730daca8c273f338f47e8ff909d3a3af 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 41 59 9.2E-8 T 10-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VF_2373 730daca8c273f338f47e8ff909d3a3af 253 Pfam PF08220 DeoR-like helix-turn-helix domain 9 62 5.6E-18 T 10-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VF_2373 730daca8c273f338f47e8ff909d3a3af 253 ProSitePatterns PS00894 DeoR-type HTH domain signature. 9 43 - T 10-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 VF_2373 730daca8c273f338f47e8ff909d3a3af 253 SUPERFAMILY SSF46785 7 65 7.55E-15 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_2373 730daca8c273f338f47e8ff909d3a3af 253 Pfam PF00455 DeoR C terminal sensor domain 77 232 1.1E-44 T 10-10-2018 IPR014036 DeoR C-terminal sensor domain VF_2373 730daca8c273f338f47e8ff909d3a3af 253 Gene3D G3DSA:1.10.10.10 1 57 2.4E-7 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2373 730daca8c273f338f47e8ff909d3a3af 253 SMART SM01134 73 234 5.2E-59 T 10-10-2018 VF_1918 537b2b5ec11ac4b1a75bca9b9380c98f 293 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 288 65.704 T 10-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_1918 537b2b5ec11ac4b1a75bca9b9380c98f 293 PIRSF PIRSF001365 1 293 1.4E-94 T 10-10-2018 IPR002220 DapA-like GO:0016829 VF_1918 537b2b5ec11ac4b1a75bca9b9380c98f 293 SMART SM01130 1 290 1.6E-142 T 10-10-2018 IPR002220 DapA-like GO:0016829 VF_1918 537b2b5ec11ac4b1a75bca9b9380c98f 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 1.2E-34 T 10-10-2018 IPR002220 DapA-like GO:0016829 VF_1918 537b2b5ec11ac4b1a75bca9b9380c98f 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 1.2E-34 T 10-10-2018 IPR002220 DapA-like GO:0016829 VF_1918 537b2b5ec11ac4b1a75bca9b9380c98f 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 1.2E-34 T 10-10-2018 IPR002220 DapA-like GO:0016829 VF_1918 537b2b5ec11ac4b1a75bca9b9380c98f 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 1.2E-34 T 10-10-2018 IPR002220 DapA-like GO:0016829 VF_1918 537b2b5ec11ac4b1a75bca9b9380c98f 293 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 10-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_1918 537b2b5ec11ac4b1a75bca9b9380c98f 293 Pfam PF00701 Dihydrodipicolinate synthetase family 2 288 4.6E-112 T 10-10-2018 IPR002220 DapA-like GO:0016829 VF_1918 537b2b5ec11ac4b1a75bca9b9380c98f 293 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 10-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 VF_1918 537b2b5ec11ac4b1a75bca9b9380c98f 293 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 288 8.5E-118 T 10-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_1918 537b2b5ec11ac4b1a75bca9b9380c98f 293 SUPERFAMILY SSF51569 2 290 1.15E-99 T 10-10-2018 VF_1918 537b2b5ec11ac4b1a75bca9b9380c98f 293 Gene3D G3DSA:3.20.20.70 1 292 4.1E-110 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A0407 eccd69783669225d690b8138805a54ac 151 SUPERFAMILY SSF47175 24 150 5.45E-37 T 10-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 VF_A0407 eccd69783669225d690b8138805a54ac 151 Gene3D G3DSA:1.20.120.10 25 151 1.2E-35 T 10-10-2018 VF_A0407 eccd69783669225d690b8138805a54ac 151 Pfam PF01322 Cytochrome C' 30 149 4.8E-34 T 10-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 VF_A0407 eccd69783669225d690b8138805a54ac 151 PIRSF PIRSF000027 8 151 8.8E-47 T 10-10-2018 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 VF_0346 b7046673f6f24124c2cac250cfc8e799 332 SUPERFAMILY SSF53448 2 220 1.13E-36 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0346 b7046673f6f24124c2cac250cfc8e799 332 Pfam PF00535 Glycosyl transferase family 2 8 136 4.1E-15 T 10-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VF_0346 b7046673f6f24124c2cac250cfc8e799 332 Gene3D G3DSA:3.90.550.10 1 207 2.4E-30 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0391 105fbb5f50b4c04ea3cde985332c81c0 186 Gene3D G3DSA:3.40.50.1000 2 186 5.7E-57 T 10-10-2018 IPR023214 HAD superfamily VF_0391 105fbb5f50b4c04ea3cde985332c81c0 186 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 24 176 4.0E-61 T 10-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VF_0391 105fbb5f50b4c04ea3cde985332c81c0 186 SUPERFAMILY SSF56784 22 178 4.91E-38 T 10-10-2018 IPR036412 HAD-like superfamily VF_0391 105fbb5f50b4c04ea3cde985332c81c0 186 PIRSF PIRSF006118 11 186 4.3E-72 T 10-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VF_0391 105fbb5f50b4c04ea3cde985332c81c0 186 Pfam PF08282 haloacid dehalogenase-like hydrolase 93 159 1.9E-8 T 10-10-2018 VF_A0789 edb85ff20b8f50fe1aea77b14a476c1f 161 Gene3D G3DSA:3.10.180.10 1 150 4.5E-24 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_A0789 edb85ff20b8f50fe1aea77b14a476c1f 161 SUPERFAMILY SSF54593 1 150 4.97E-27 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_A0789 edb85ff20b8f50fe1aea77b14a476c1f 161 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 147 8.7E-14 T 10-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VF_A0789 edb85ff20b8f50fe1aea77b14a476c1f 161 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 10-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 VF_1913 109d99d3abfb66a73996e2567987aec9 119 Pfam PF03960 ArsC family 9 115 3.5E-18 T 10-10-2018 IPR006660 Arsenate reductase-like VF_1913 109d99d3abfb66a73996e2567987aec9 119 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 7 115 8.3E-31 T 10-10-2018 IPR006504 Transcriptional regulator Spx/MgsR VF_1913 109d99d3abfb66a73996e2567987aec9 119 SUPERFAMILY SSF52833 5 117 1.81E-35 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1913 109d99d3abfb66a73996e2567987aec9 119 Gene3D G3DSA:3.40.30.10 5 117 2.2E-41 T 10-10-2018 VF_2141 9ee94440ea5daebfa896590713ab9333 341 Gene3D G3DSA:1.10.3720.10 90 303 1.9E-15 T 10-10-2018 IPR035906 MetI-like superfamily VF_2141 9ee94440ea5daebfa896590713ab9333 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 291 1.6E-18 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_2141 9ee94440ea5daebfa896590713ab9333 341 SUPERFAMILY SSF161098 96 288 6.28E-19 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0487 352a85898b3639c454cdf87856bcdce8 307 SUPERFAMILY SSF56935 22 307 1.12E-50 T 10-10-2018 VF_A0487 352a85898b3639c454cdf87856bcdce8 307 Gene3D G3DSA:2.40.160.10 22 307 1.8E-56 T 10-10-2018 IPR023614 Porin domain superfamily VF_A0487 352a85898b3639c454cdf87856bcdce8 307 Pfam PF13609 Gram-negative porin 14 291 7.5E-26 T 10-10-2018 VF_0741 4257e3b10ec901f1c0066c4de0498a26 413 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 5 402 8.5E-162 T 10-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VF_0741 4257e3b10ec901f1c0066c4de0498a26 413 SUPERFAMILY SSF53720 2 406 7.85E-108 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VF_0741 4257e3b10ec901f1c0066c4de0498a26 413 Gene3D G3DSA:3.40.309.10 218 370 1.0E-149 T 10-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VF_0741 4257e3b10ec901f1c0066c4de0498a26 413 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 319 340 - T 10-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VF_0741 4257e3b10ec901f1c0066c4de0498a26 413 Pfam PF00171 Aldehyde dehydrogenase family 3 273 4.3E-14 T 10-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VF_0741 4257e3b10ec901f1c0066c4de0498a26 413 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 1 412 38.181 T 10-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VF_0741 4257e3b10ec901f1c0066c4de0498a26 413 Gene3D G3DSA:3.40.605.10 5 405 1.0E-149 T 10-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VF_0741 4257e3b10ec901f1c0066c4de0498a26 413 PIRSF PIRSF000151 1 413 3.7E-160 T 10-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 VF_0598 b0d00d79a56e14412c84b3592886387f 281 SUPERFAMILY SSF55620 184 266 4.37E-10 T 10-10-2018 VF_0598 b0d00d79a56e14412c84b3592886387f 281 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 281 162.491 T 10-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VF_0598 b0d00d79a56e14412c84b3592886387f 281 TIGRFAM TIGR03138 QueF: queuine synthase 10 281 4.4E-130 T 10-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VF_0598 b0d00d79a56e14412c84b3592886387f 281 Gene3D G3DSA:3.30.1130.10 143 281 1.2E-61 T 10-10-2018 VF_0598 b0d00d79a56e14412c84b3592886387f 281 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 21 130 1.2E-48 T 10-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VF_0598 b0d00d79a56e14412c84b3592886387f 281 Gene3D G3DSA:3.30.1130.10 21 138 5.3E-47 T 10-10-2018 VF_0598 b0d00d79a56e14412c84b3592886387f 281 PIRSF PIRSF004750 6 281 1.4E-128 T 10-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VF_0598 b0d00d79a56e14412c84b3592886387f 281 Pfam PF14489 QueF-like protein 194 268 6.2E-26 T 10-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VF_0431 53828a54f04f095ae6eea1e38c6d209e 345 SUPERFAMILY SSF52540 5 336 5.59E-73 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0431 53828a54f04f095ae6eea1e38c6d209e 345 SMART SM00382 122 288 0.0044 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0431 53828a54f04f095ae6eea1e38c6d209e 345 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_0431 53828a54f04f095ae6eea1e38c6d209e 345 Pfam PF00437 Type II/IV secretion system protein 12 269 7.3E-46 T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_0431 53828a54f04f095ae6eea1e38c6d209e 345 Gene3D G3DSA:3.40.50.300 102 343 7.5E-101 T 10-10-2018 VF_0431 53828a54f04f095ae6eea1e38c6d209e 345 Gene3D G3DSA:3.30.450.90 1 100 4.1E-36 T 10-10-2018 VF_0431 53828a54f04f095ae6eea1e38c6d209e 345 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 337 1.4E-147 T 10-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 VF_0784 86fafc48bd6f8d23802cd6a10adda773 275 Gene3D G3DSA:3.40.50.720 3 258 6.5E-57 T 10-10-2018 VF_0784 86fafc48bd6f8d23802cd6a10adda773 275 SUPERFAMILY SSF51735 2 200 1.26E-51 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0784 86fafc48bd6f8d23802cd6a10adda773 275 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VF_0784 86fafc48bd6f8d23802cd6a10adda773 275 Pfam PF00106 short chain dehydrogenase 5 187 8.0E-40 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0784 86fafc48bd6f8d23802cd6a10adda773 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 1.7E-17 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0784 86fafc48bd6f8d23802cd6a10adda773 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.7E-17 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0784 86fafc48bd6f8d23802cd6a10adda773 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 1.7E-17 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0784 86fafc48bd6f8d23802cd6a10adda773 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.7E-17 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0784 86fafc48bd6f8d23802cd6a10adda773 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.7E-17 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_2154 5b2154fd46cc7805e9b4ebdd4770d151 122 PIRSF PIRSF006287 1 122 3.7E-48 T 10-10-2018 IPR008249 Uncharacterised protein family UPF0231 VF_2154 5b2154fd46cc7805e9b4ebdd4770d151 122 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 119 9.4E-41 T 10-10-2018 IPR008249 Uncharacterised protein family UPF0231 VF_2154 5b2154fd46cc7805e9b4ebdd4770d151 122 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 119 4.0E-65 T 10-10-2018 IPR008249 Uncharacterised protein family UPF0231 VF_2154 5b2154fd46cc7805e9b4ebdd4770d151 122 Hamap MF_01053 UPF0231 protein YacL [yacL]. 1 121 26.968 T 10-10-2018 IPR008249 Uncharacterised protein family UPF0231 VF_1985 8d6eb81b5e569c0fb29590896cb89c2d 735 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 557 729 4.0E-13 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_1985 8d6eb81b5e569c0fb29590896cb89c2d 735 SUPERFAMILY SSF161098 542 725 2.09E-19 T 10-10-2018 IPR035906 MetI-like superfamily VF_1985 8d6eb81b5e569c0fb29590896cb89c2d 735 SUPERFAMILY SSF50978 77 381 2.26E-6 T 10-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 VF_1985 8d6eb81b5e569c0fb29590896cb89c2d 735 SUPERFAMILY SSF161098 420 530 6.76E-6 T 10-10-2018 IPR035906 MetI-like superfamily VF_0890 6de3add96b2d3d388daea79bab71cb55 87 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 2 85 9.3E-49 T 10-10-2018 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 VF_0890 6de3add96b2d3d388daea79bab71cb55 87 PRINTS PR00160 Glutaredoxin signature 66 79 7.2E-11 T 10-10-2018 IPR014025 Glutaredoxin subgroup VF_0890 6de3add96b2d3d388daea79bab71cb55 87 PRINTS PR00160 Glutaredoxin signature 52 65 7.2E-11 T 10-10-2018 IPR014025 Glutaredoxin subgroup VF_0890 6de3add96b2d3d388daea79bab71cb55 87 PRINTS PR00160 Glutaredoxin signature 3 21 7.2E-11 T 10-10-2018 IPR014025 Glutaredoxin subgroup VF_0890 6de3add96b2d3d388daea79bab71cb55 87 SUPERFAMILY SSF52833 3 82 5.4E-20 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_0890 6de3add96b2d3d388daea79bab71cb55 87 Pfam PF00462 Glutaredoxin 3 69 5.8E-16 T 10-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 VF_0890 6de3add96b2d3d388daea79bab71cb55 87 Gene3D G3DSA:3.40.30.10 1 85 1.9E-24 T 10-10-2018 VF_0376 29de74b26cf693622062c855f90924ab 489 Gene3D G3DSA:2.40.50.140 31 127 4.7E-31 T 10-10-2018 VF_0376 29de74b26cf693622062c855f90924ab 489 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 426 1.8E-170 T 10-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 VF_0376 29de74b26cf693622062c855f90924ab 489 SMART SM00316 37 122 7.2E-8 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_0376 29de74b26cf693622062c855f90924ab 489 Pfam PF10150 Ribonuclease E/G family 124 393 1.4E-102 T 10-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 VF_0376 29de74b26cf693622062c855f90924ab 489 Gene3D G3DSA:3.40.1260.20 403 488 1.7E-7 T 10-10-2018 VF_0376 29de74b26cf693622062c855f90924ab 489 SUPERFAMILY SSF50249 39 128 5.95E-19 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_0874 e815a8cfcabf3cc30e460b8b01165d87 299 Pfam PF07549 SecD/SecF GG Motif 30 53 1.1E-8 T 10-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site VF_0874 e815a8cfcabf3cc30e460b8b01165d87 299 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 6 283 21.85 T 10-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 VF_0874 e815a8cfcabf3cc30e460b8b01165d87 299 Pfam PF02355 Protein export membrane protein 102 279 5.9E-56 T 10-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VF_0874 e815a8cfcabf3cc30e460b8b01165d87 299 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 34 274 5.0E-64 T 10-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 VF_0874 e815a8cfcabf3cc30e460b8b01165d87 299 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 105 273 9.5E-49 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VF_0874 e815a8cfcabf3cc30e460b8b01165d87 299 Gene3D G3DSA:1.20.1640.10 100 283 1.1E-10 T 10-10-2018 VF_0874 e815a8cfcabf3cc30e460b8b01165d87 299 PRINTS PR01755 Bacterial translocase SecF protein signature 144 158 1.7E-24 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VF_0874 e815a8cfcabf3cc30e460b8b01165d87 299 PRINTS PR01755 Bacterial translocase SecF protein signature 192 210 1.7E-24 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VF_0874 e815a8cfcabf3cc30e460b8b01165d87 299 PRINTS PR01755 Bacterial translocase SecF protein signature 33 48 1.7E-24 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VF_0874 e815a8cfcabf3cc30e460b8b01165d87 299 PRINTS PR01755 Bacterial translocase SecF protein signature 224 239 1.7E-24 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VF_0874 e815a8cfcabf3cc30e460b8b01165d87 299 SUPERFAMILY SSF82866 85 279 1.2E-35 T 10-10-2018 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SUPERFAMILY SSF49313 714 813 5.76E-12 T 10-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.60 156 250 1.0E-11 T 10-10-2018 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SMART SM00112 404 481 4.2E-9 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SMART SM00112 178 255 6.9E-10 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SMART SM00112 630 707 3.4E-7 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SMART SM00112 517 594 4.1E-8 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SMART SM00112 743 820 4.1E-8 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SMART SM00112 291 368 1.9E-5 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SMART SM00112 856 933 3.3E-9 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SMART SM00736 493 593 0.078 T 10-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SMART SM00736 606 706 0.22 T 10-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SMART SM00736 719 819 0.078 T 10-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SMART SM00736 832 932 0.044 T 10-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SMART SM00736 267 367 0.18 T 10-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SUPERFAMILY SSF53300 3457 3638 2.22E-10 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Pfam PF00028 Cadherin domain 502 581 1.5E-7 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Pfam PF00028 Cadherin domain 389 468 3.5E-7 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Pfam PF00028 Cadherin domain 728 807 1.5E-7 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Pfam PF00028 Cadherin domain 841 920 1.8E-7 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Pfam PF00028 Cadherin domain 615 694 1.8E-7 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SUPERFAMILY SSF49313 488 587 5.76E-12 T 10-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SUPERFAMILY SSF49313 827 933 3.14E-12 T 10-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SUPERFAMILY SSF51120 3774 3902 2.22E-12 T 10-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SUPERFAMILY SSF49313 375 475 1.83E-12 T 10-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SUPERFAMILY SSF49313 601 707 6.81E-12 T 10-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.60 830 928 1.5E-13 T 10-10-2018 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.60 491 589 7.9E-14 T 10-10-2018 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.60 265 363 2.8E-12 T 10-10-2018 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.60 717 815 7.9E-14 T 10-10-2018 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.60 604 702 1.4E-13 T 10-10-2018 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.60 378 476 3.3E-14 T 10-10-2018 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 PRINTS PR00205 Cadherin signature 200 219 5.3E-5 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 PRINTS PR00205 Cadherin signature 433 459 5.3E-5 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 PRINTS PR00205 Cadherin signature 236 255 5.3E-5 T 10-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SUPERFAMILY SSF49313 163 249 7.07E-11 T 10-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 2208 2306 6.4E-21 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 2420 2520 1.3E-20 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 SUPERFAMILY SSF49313 262 361 1.57E-10 T 10-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3797 3815 - T 10-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3806 3824 - T 10-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 1101 1187 1.4E-7 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 1864 1951 2.5E-7 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 1527 1613 3.3E-7 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 1952 2036 2.6E-8 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 2645 2745 7.8E-9 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 1188 1272 3.6E-7 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 2122 2207 3.2E-8 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 1273 1359 4.8E-8 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 933 1020 4.9E-8 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 2037 2121 1.5E-7 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 1695 1781 2.6E-8 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 1440 1526 2.6E-8 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A1162 ef1ea895413711d9895dc0cc9dd2d883 3933 Gene3D G3DSA:2.60.40.10 2535 2635 2.3E-9 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_2254 9d4476e27c35599165fb29e5a87761bb 613 Pfam PF04539 Sigma-70 region 3 458 534 1.8E-28 T 10-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 572 598 - T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 Gene3D G3DSA:1.10.10.10 452 528 2.7E-32 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2254 9d4476e27c35599165fb29e5a87761bb 613 Pfam PF04545 Sigma-70, region 4 547 600 1.8E-19 T 10-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 Gene3D G3DSA:1.10.10.10 529 613 1.6E-36 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2254 9d4476e27c35599165fb29e5a87761bb 613 Pfam PF00140 Sigma-70 factor, region 1.2 98 128 1.2E-12 T 10-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 Gene3D G3DSA:1.10.601.10 113 448 3.2E-139 T 10-10-2018 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 403 416 - T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 PRINTS PR00046 Major sigma-70 factor signature 427 435 3.0E-31 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 PRINTS PR00046 Major sigma-70 factor signature 572 587 3.0E-31 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 PRINTS PR00046 Major sigma-70 factor signature 587 598 3.0E-31 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 PRINTS PR00046 Major sigma-70 factor signature 551 563 3.0E-31 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 PRINTS PR00046 Major sigma-70 factor signature 403 416 3.0E-31 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 SUPERFAMILY SSF88659 509 611 2.22E-25 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_2254 9d4476e27c35599165fb29e5a87761bb 613 Pfam PF03979 Sigma-70 factor, region 1.1 4 80 5.2E-28 T 10-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 SUPERFAMILY SSF88659 452 526 1.88E-20 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_2254 9d4476e27c35599165fb29e5a87761bb 613 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 375 611 2.3E-120 T 10-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 4 612 45.747 T 10-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 SUPERFAMILY SSF88946 115 446 1.44E-99 T 10-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 Gene3D G3DSA:1.10.220.120 1 64 1.4E-29 T 10-10-2018 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 Pfam PF04542 Sigma-70 region 2 379 448 1.7E-21 T 10-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 Pfam PF04546 Sigma-70, non-essential region 139 348 1.0E-66 T 10-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_2254 9d4476e27c35599165fb29e5a87761bb 613 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 375 600 1.8E-37 T 10-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VF_A0308 45f930f49c14cfeabc8f43019d23c9fa 315 SUPERFAMILY SSF161098 68 292 7.41E-19 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0308 45f930f49c14cfeabc8f43019d23c9fa 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 309 6.5E-42 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_A0308 45f930f49c14cfeabc8f43019d23c9fa 315 Gene3D G3DSA:1.10.3720.10 63 303 8.8E-24 T 10-10-2018 IPR035906 MetI-like superfamily VF_0084 d4723b0e5a54b384a72bd50330d36c01 175 Pfam PF00210 Ferritin-like domain 8 143 1.3E-40 T 10-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 VF_0084 d4723b0e5a54b384a72bd50330d36c01 175 Gene3D G3DSA:1.20.1260.10 1 175 5.5E-53 T 10-10-2018 IPR012347 Ferritin-like VF_0084 d4723b0e5a54b384a72bd50330d36c01 175 SUPERFAMILY SSF47240 1 159 5.03E-58 T 10-10-2018 IPR009078 Ferritin-like superfamily VF_A0591 22745b30ee94d66ce0ee20ec1da1d900 327 Pfam PF13533 Biotin-lipoyl like 43 89 6.6E-11 T 10-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VF_A0591 22745b30ee94d66ce0ee20ec1da1d900 327 Gene3D G3DSA:2.40.50.100 199 235 3.0E-16 T 10-10-2018 VF_A0591 22745b30ee94d66ce0ee20ec1da1d900 327 Gene3D G3DSA:2.40.30.170 236 325 3.0E-16 T 10-10-2018 VF_A0591 22745b30ee94d66ce0ee20ec1da1d900 327 Gene3D G3DSA:1.10.287.470 77 107 3.0E-10 T 10-10-2018 VF_A0591 22745b30ee94d66ce0ee20ec1da1d900 327 Gene3D G3DSA:2.40.50.100 42 76 3.0E-10 T 10-10-2018 VF_A0591 22745b30ee94d66ce0ee20ec1da1d900 327 SUPERFAMILY SSF111369 40 109 2.88E-7 T 10-10-2018 VF_A0591 22745b30ee94d66ce0ee20ec1da1d900 327 Gene3D G3DSA:1.10.287.470 109 198 3.0E-16 T 10-10-2018 VF_0940 5cd2f84bed1f02b341e6c884fc139df0 329 Gene3D G3DSA:3.20.20.70 2 329 7.7E-81 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0940 5cd2f84bed1f02b341e6c884fc139df0 329 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 5 329 36.752 T 10-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_0940 5cd2f84bed1f02b341e6c884fc139df0 329 Pfam PF13353 4Fe-4S single cluster domain 23 125 2.5E-9 T 10-10-2018 VF_0940 5cd2f84bed1f02b341e6c884fc139df0 329 SMART SM00729 14 226 4.0E-4 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VF_0940 5cd2f84bed1f02b341e6c884fc139df0 329 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 6 329 3.4E-103 T 10-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_0940 5cd2f84bed1f02b341e6c884fc139df0 329 Pfam PF04055 Radical SAM superfamily 19 181 1.2E-26 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_0940 5cd2f84bed1f02b341e6c884fc139df0 329 SUPERFAMILY SSF102114 6 278 9.94E-68 T 10-10-2018 VF_0940 5cd2f84bed1f02b341e6c884fc139df0 329 Pfam PF06463 Molybdenum Cofactor Synthesis C 186 312 6.8E-39 T 10-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_A0376 53f979db7422a05b2d0ea4533bb06eb7 374 Pfam PF01103 Surface antigen 92 372 4.9E-11 T 10-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 VF_A0376 53f979db7422a05b2d0ea4533bb06eb7 374 Gene3D G3DSA:2.40.160.50 91 372 8.9E-14 T 10-10-2018 VF_A0376 53f979db7422a05b2d0ea4533bb06eb7 374 SUPERFAMILY SSF56935 89 365 1.37E-5 T 10-10-2018 VF_1741 0843be25b7a1bd451278157bfe4bf5de 304 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 4 288 1.6E-125 T 10-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 VF_1741 0843be25b7a1bd451278157bfe4bf5de 304 Gene3D G3DSA:3.40.366.10 4 283 5.5E-107 T 10-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 VF_1741 0843be25b7a1bd451278157bfe4bf5de 304 PIRSF PIRSF000446 2 304 7.7E-134 T 10-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 VF_1741 0843be25b7a1bd451278157bfe4bf5de 304 SUPERFAMILY SSF52151 4 302 4.19E-81 T 10-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VF_1741 0843be25b7a1bd451278157bfe4bf5de 304 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 4 304 3.3E-38 T 10-10-2018 IPR020801 Polyketide synthase, acyl transferase domain VF_1741 0843be25b7a1bd451278157bfe4bf5de 304 SUPERFAMILY SSF55048 127 194 2.75E-17 T 10-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding VF_1741 0843be25b7a1bd451278157bfe4bf5de 304 Gene3D G3DSA:3.30.70.250 122 194 5.5E-107 T 10-10-2018 VF_1741 0843be25b7a1bd451278157bfe4bf5de 304 Pfam PF00698 Acyl transferase domain 5 293 3.4E-38 T 10-10-2018 IPR014043 Acyl transferase VF_A0419 c01000f900911642c256e99b3274eb6d 311 Gene3D G3DSA:1.10.10.10 9 95 7.3E-24 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0419 c01000f900911642c256e99b3274eb6d 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 4.5E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0419 c01000f900911642c256e99b3274eb6d 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 4.5E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0419 c01000f900911642c256e99b3274eb6d 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 4.5E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0419 c01000f900911642c256e99b3274eb6d 311 SUPERFAMILY SSF46785 9 117 1.53E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0419 c01000f900911642c256e99b3274eb6d 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 68 2.0E-19 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0419 c01000f900911642c256e99b3274eb6d 311 Gene3D G3DSA:3.40.190.10 97 298 3.9E-53 T 10-10-2018 VF_A0419 c01000f900911642c256e99b3274eb6d 311 Pfam PF03466 LysR substrate binding domain 96 301 6.3E-35 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0419 c01000f900911642c256e99b3274eb6d 311 SUPERFAMILY SSF53850 96 301 2.53E-34 T 10-10-2018 VF_A0419 c01000f900911642c256e99b3274eb6d 311 Gene3D G3DSA:3.40.190.10 169 270 3.9E-53 T 10-10-2018 VF_1982 ce9671bd141950693e7365a30a8491fd 232 Pfam PF01895 PhoU domain 125 210 9.4E-15 T 10-10-2018 IPR026022 PhoU domain VF_1982 ce9671bd141950693e7365a30a8491fd 232 Pfam PF01895 PhoU domain 23 108 5.2E-23 T 10-10-2018 IPR026022 PhoU domain VF_1982 ce9671bd141950693e7365a30a8491fd 232 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 10 219 6.9E-74 T 10-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 VF_1982 ce9671bd141950693e7365a30a8491fd 232 PIRSF PIRSF003107 4 223 9.9E-69 T 10-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 VF_1982 ce9671bd141950693e7365a30a8491fd 232 Gene3D G3DSA:1.20.58.220 116 231 6.0E-32 T 10-10-2018 IPR038078 PhoU-like domain superfamily VF_1982 ce9671bd141950693e7365a30a8491fd 232 Gene3D G3DSA:1.20.58.220 1 113 6.2E-41 T 10-10-2018 IPR038078 PhoU-like domain superfamily VF_1982 ce9671bd141950693e7365a30a8491fd 232 SUPERFAMILY SSF109755 10 226 2.83E-69 T 10-10-2018 VF_A0937 9cdca473e608551fd0da5ff4f62e1472 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 130 146 5.8E-10 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_A0937 9cdca473e608551fd0da5ff4f62e1472 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 148 168 5.8E-10 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_A0937 9cdca473e608551fd0da5ff4f62e1472 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 5.8E-10 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_A0937 9cdca473e608551fd0da5ff4f62e1472 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 99 112 5.8E-10 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_A0937 9cdca473e608551fd0da5ff4f62e1472 217 Gene3D G3DSA:3.40.50.1000 5 187 3.1E-48 T 10-10-2018 IPR023214 HAD superfamily VF_A0937 9cdca473e608551fd0da5ff4f62e1472 217 Gene3D G3DSA:1.10.150.240 17 82 3.1E-48 T 10-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VF_A0937 9cdca473e608551fd0da5ff4f62e1472 217 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 83 184 4.8E-13 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_A0937 9cdca473e608551fd0da5ff4f62e1472 217 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 182 8.5E-31 T 10-10-2018 VF_A0937 9cdca473e608551fd0da5ff4f62e1472 217 SUPERFAMILY SSF56784 1 214 2.01E-48 T 10-10-2018 IPR036412 HAD-like superfamily VF_0137 291dc5435a1aec4982e75ba5a15c20be 591 SUPERFAMILY SSF53649 225 588 3.53E-59 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_0137 291dc5435a1aec4982e75ba5a15c20be 591 Pfam PF00884 Sulfatase 228 506 4.0E-34 T 10-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VF_0137 291dc5435a1aec4982e75ba5a15c20be 591 Pfam PF11893 Domain of unknown function (DUF3413) 1 219 8.3E-51 T 10-10-2018 IPR024588 Inner membrane protein YejM, N-terminal VF_0137 291dc5435a1aec4982e75ba5a15c20be 591 Gene3D G3DSA:3.40.720.10 216 540 4.7E-56 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VF_0137 291dc5435a1aec4982e75ba5a15c20be 591 PIRSF PIRSF004950 1 591 2.0E-195 T 10-10-2018 IPR012159 Inner membrane protein YejM VF_A1071 8a6b3ed50811b7ffd53eb1e899f4988c 509 SUPERFAMILY SSF55785 13 108 8.03E-26 T 10-10-2018 IPR035965 PAS domain superfamily VF_A1071 8a6b3ed50811b7ffd53eb1e899f4988c 509 SMART SM00283 248 509 1.1E-39 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A1071 8a6b3ed50811b7ffd53eb1e899f4988c 509 Gene3D G3DSA:1.10.287.950 213 509 4.6E-52 T 10-10-2018 VF_A1071 8a6b3ed50811b7ffd53eb1e899f4988c 509 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 332 476 1.4E-33 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A1071 8a6b3ed50811b7ffd53eb1e899f4988c 509 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 7 108 3.0E-13 T 10-10-2018 IPR000014 PAS domain VF_A1071 8a6b3ed50811b7ffd53eb1e899f4988c 509 Gene3D G3DSA:3.30.450.20 2 133 9.7E-27 T 10-10-2018 VF_A1071 8a6b3ed50811b7ffd53eb1e899f4988c 509 SMART SM00091 2 68 6.3E-6 T 10-10-2018 IPR000014 PAS domain VF_A1071 8a6b3ed50811b7ffd53eb1e899f4988c 509 Pfam PF08447 PAS fold 25 107 1.1E-13 T 10-10-2018 IPR013655 PAS fold-3 GO:0005515 VF_A1071 8a6b3ed50811b7ffd53eb1e899f4988c 509 SUPERFAMILY SSF58104 235 509 7.15E-60 T 10-10-2018 VF_A1071 8a6b3ed50811b7ffd53eb1e899f4988c 509 SMART SM00086 74 115 0.0012 T 10-10-2018 IPR001610 PAC motif VF_0330 8ab6d1163a070f7bc6918ed8e42e7152 69 Pfam PF06526 Protein of unknown function (DUF1107) 2 64 1.4E-27 T 10-10-2018 IPR009491 Protein of unknown function DUF1107 VF_0330 8ab6d1163a070f7bc6918ed8e42e7152 69 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 65 4.0E-32 T 10-10-2018 IPR009491 Protein of unknown function DUF1107 VF_0330 8ab6d1163a070f7bc6918ed8e42e7152 69 Gene3D G3DSA:3.30.1910.10 2 65 1.4E-20 T 10-10-2018 VF_0782 ffae589e3a12eecd75ec757ac8dfd708 133 SUPERFAMILY SSF46955 1 126 2.53E-35 T 10-10-2018 IPR009061 Putative DNA-binding domain superfamily VF_0782 ffae589e3a12eecd75ec757ac8dfd708 133 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_0782 ffae589e3a12eecd75ec757ac8dfd708 133 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 1.3E-56 T 10-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 VF_0782 ffae589e3a12eecd75ec757ac8dfd708 133 Pfam PF09278 MerR, DNA binding 44 108 9.7E-18 T 10-10-2018 IPR015358 Transcription regulator MerR, DNA binding VF_0782 ffae589e3a12eecd75ec757ac8dfd708 133 Gene3D G3DSA:1.10.1660.10 1 125 5.1E-33 T 10-10-2018 VF_0782 ffae589e3a12eecd75ec757ac8dfd708 133 SMART SM00422 1 70 6.9E-28 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_0782 ffae589e3a12eecd75ec757ac8dfd708 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 2.2E-6 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_0782 ffae589e3a12eecd75ec757ac8dfd708 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.2E-6 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_0782 ffae589e3a12eecd75ec757ac8dfd708 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 2.2E-6 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_0782 ffae589e3a12eecd75ec757ac8dfd708 133 Pfam PF00376 MerR family regulatory protein 2 39 9.4E-15 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_A1165 12a2edfd2b73e775658611bc879b9ba2 712 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 11 706 3.2E-290 T 10-10-2018 IPR017750 ATPase, type I secretion system VF_A1165 12a2edfd2b73e775658611bc879b9ba2 712 SUPERFAMILY SSF52540 466 701 2.83E-70 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A1165 12a2edfd2b73e775658611bc879b9ba2 712 Pfam PF00005 ABC transporter 495 643 1.9E-34 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A1165 12a2edfd2b73e775658611bc879b9ba2 712 SUPERFAMILY SSF90123 145 460 5.36E-48 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_A1165 12a2edfd2b73e775658611bc879b9ba2 712 Gene3D G3DSA:3.40.50.300 469 709 7.5E-75 T 10-10-2018 VF_A1165 12a2edfd2b73e775658611bc879b9ba2 712 SMART SM00382 503 689 1.8E-16 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A1165 12a2edfd2b73e775658611bc879b9ba2 712 Pfam PF00664 ABC transporter transmembrane region 166 425 6.0E-24 T 10-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VF_A1165 12a2edfd2b73e775658611bc879b9ba2 712 Gene3D G3DSA:3.90.70.10 7 134 1.2E-32 T 10-10-2018 VF_A1165 12a2edfd2b73e775658611bc879b9ba2 712 Gene3D G3DSA:1.20.1560.10 150 463 2.3E-55 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_A0237 682bdc3519571e80de41537092a1627d 927 Pfam PF13426 PAS domain 278 381 3.8E-14 T 10-10-2018 IPR000014 PAS domain VF_A0237 682bdc3519571e80de41537092a1627d 927 Pfam PF00512 His Kinase A (phospho-acceptor) domain 402 466 4.7E-17 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0237 682bdc3519571e80de41537092a1627d 927 Gene3D G3DSA:1.10.287.130 378 465 1.4E-24 T 10-10-2018 VF_A0237 682bdc3519571e80de41537092a1627d 927 SUPERFAMILY SSF47226 756 907 7.33E-18 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_A0237 682bdc3519571e80de41537092a1627d 927 SUPERFAMILY SSF47384 387 468 1.18E-19 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_A0237 682bdc3519571e80de41537092a1627d 927 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 514 629 3.3E-30 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0237 682bdc3519571e80de41537092a1627d 927 SMART SM00086 340 382 3.3E-9 T 10-10-2018 IPR001610 PAC motif VF_A0237 682bdc3519571e80de41537092a1627d 927 SUPERFAMILY SSF52172 657 783 1.31E-29 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0237 682bdc3519571e80de41537092a1627d 927 Pfam PF00072 Response regulator receiver domain 661 771 1.6E-18 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0237 682bdc3519571e80de41537092a1627d 927 Gene3D G3DSA:1.20.120.160 810 927 9.5E-16 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_A0237 682bdc3519571e80de41537092a1627d 927 SMART SM00388 402 467 2.2E-21 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0237 682bdc3519571e80de41537092a1627d 927 SUPERFAMILY SSF55785 273 380 1.55E-22 T 10-10-2018 IPR035965 PAS domain superfamily VF_A0237 682bdc3519571e80de41537092a1627d 927 SMART SM00091 267 332 1.3E-4 T 10-10-2018 IPR000014 PAS domain VF_A0237 682bdc3519571e80de41537092a1627d 927 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 264 389 1.2E-19 T 10-10-2018 IPR000014 PAS domain VF_A0237 682bdc3519571e80de41537092a1627d 927 Gene3D G3DSA:3.30.450.20 265 377 4.7E-24 T 10-10-2018 VF_A0237 682bdc3519571e80de41537092a1627d 927 SMART SM00073 824 921 1.4E-4 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VF_A0237 682bdc3519571e80de41537092a1627d 927 Pfam PF01627 Hpt domain 835 917 2.2E-11 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VF_A0237 682bdc3519571e80de41537092a1627d 927 SMART SM00387 514 630 2.4E-36 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0237 682bdc3519571e80de41537092a1627d 927 PRINTS PR00344 Bacterial sensor protein C-terminal signature 614 627 4.4E-17 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0237 682bdc3519571e80de41537092a1627d 927 PRINTS PR00344 Bacterial sensor protein C-terminal signature 555 569 4.4E-17 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0237 682bdc3519571e80de41537092a1627d 927 PRINTS PR00344 Bacterial sensor protein C-terminal signature 590 608 4.4E-17 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0237 682bdc3519571e80de41537092a1627d 927 PRINTS PR00344 Bacterial sensor protein C-terminal signature 573 583 4.4E-17 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0237 682bdc3519571e80de41537092a1627d 927 Gene3D G3DSA:3.40.50.2300 645 783 1.6E-32 T 10-10-2018 VF_A0237 682bdc3519571e80de41537092a1627d 927 Gene3D G3DSA:3.30.565.10 467 635 2.8E-45 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0237 682bdc3519571e80de41537092a1627d 927 SMART SM00448 659 771 2.7E-23 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0237 682bdc3519571e80de41537092a1627d 927 SUPERFAMILY SSF55874 456 629 1.07E-42 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 281 3.5E-34 T 10-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 Gene3D G3DSA:1.10.601.10 3 122 1.6E-28 T 10-10-2018 VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 SUPERFAMILY SSF88659 198 282 1.76E-18 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 Pfam PF04542 Sigma-70 region 2 53 122 2.7E-16 T 10-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 284 54.28 T 10-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 252 278 - T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 Pfam PF00140 Sigma-70 factor, region 1.2 14 40 4.4E-8 T 10-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 Pfam PF04545 Sigma-70, region 4 229 279 1.6E-15 T 10-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 15 282 1.3E-124 T 10-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 SUPERFAMILY SSF88946 11 122 8.48E-40 T 10-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 Gene3D G3DSA:1.20.140.160 138 284 2.6E-15 T 10-10-2018 VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 PRINTS PR00046 Major sigma-70 factor signature 267 278 3.1E-17 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 PRINTS PR00046 Major sigma-70 factor signature 77 90 3.1E-17 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 PRINTS PR00046 Major sigma-70 factor signature 252 267 3.1E-17 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2450 c0a7feb4c5161f977193820f67e99b0a 286 PRINTS PR00046 Major sigma-70 factor signature 233 245 3.1E-17 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_A0208 13296527e2fa3c421b50357ff2a4ec24 388 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 170 382 2.0E-14 T 10-10-2018 VF_A0208 13296527e2fa3c421b50357ff2a4ec24 388 Gene3D G3DSA:3.20.20.70 10 377 3.5E-112 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A0208 13296527e2fa3c421b50357ff2a4ec24 388 Pfam PF04055 Radical SAM superfamily 21 186 1.4E-9 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_A0208 13296527e2fa3c421b50357ff2a4ec24 388 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 14 374 1.8E-151 T 10-10-2018 VF_A0208 13296527e2fa3c421b50357ff2a4ec24 388 Pfam PF13186 Iron-sulfur cluster-binding domain 265 328 5.5E-9 T 10-10-2018 IPR023885 4Fe4S-binding SPASM domain VF_A0208 13296527e2fa3c421b50357ff2a4ec24 388 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 265 355 7.8E-18 T 10-10-2018 IPR023885 4Fe4S-binding SPASM domain VF_A0208 13296527e2fa3c421b50357ff2a4ec24 388 Pfam PF13353 4Fe-4S single cluster domain 21 125 7.5E-6 T 10-10-2018 VF_A0208 13296527e2fa3c421b50357ff2a4ec24 388 SUPERFAMILY SSF102114 21 337 1.44E-40 T 10-10-2018 VF_0201 b9066209e9c6e3085ee9c4e2441b3dd8 335 SUPERFAMILY SSF51735 1 334 1.64E-96 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0201 b9066209e9c6e3085ee9c4e2441b3dd8 335 Gene3D G3DSA:3.90.25.10 193 328 1.4E-138 T 10-10-2018 VF_0201 b9066209e9c6e3085ee9c4e2441b3dd8 335 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 334 9.3E-138 T 10-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 VF_0201 b9066209e9c6e3085ee9c4e2441b3dd8 335 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 323 6.1E-64 T 10-10-2018 IPR016040 NAD(P)-binding domain VF_0201 b9066209e9c6e3085ee9c4e2441b3dd8 335 Gene3D G3DSA:3.40.50.720 3 273 1.4E-138 T 10-10-2018 VF_0804 32c9aee4e20cc465dc65ab0500fe4bd6 555 SUPERFAMILY SSF52402 207 479 1.31E-74 T 10-10-2018 VF_0804 32c9aee4e20cc465dc65ab0500fe4bd6 555 Gene3D G3DSA:3.40.50.620 194 514 7.4E-114 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0804 32c9aee4e20cc465dc65ab0500fe4bd6 555 Pfam PF13537 Glutamine amidotransferase domain 48 165 3.6E-40 T 10-10-2018 IPR017932 Glutamine amidotransferase type 2 domain VF_0804 32c9aee4e20cc465dc65ab0500fe4bd6 555 PIRSF PIRSF001589 363 511 3.1E-27 T 10-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 VF_0804 32c9aee4e20cc465dc65ab0500fe4bd6 555 PIRSF PIRSF001589 1 371 2.4E-106 T 10-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 VF_0804 32c9aee4e20cc465dc65ab0500fe4bd6 555 SUPERFAMILY SSF56235 1 196 2.66E-58 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_0804 32c9aee4e20cc465dc65ab0500fe4bd6 555 Pfam PF00733 Asparagine synthase 212 367 3.1E-56 T 10-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 VF_0804 32c9aee4e20cc465dc65ab0500fe4bd6 555 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 371 2.3E-117 T 10-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 VF_0804 32c9aee4e20cc465dc65ab0500fe4bd6 555 Gene3D G3DSA:3.60.20.10 2 193 4.1E-71 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_A0826 9949107a5e2d67761f5026bc3943c1d0 277 Gene3D G3DSA:1.10.3470.10 1 255 2.6E-41 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_A0826 9949107a5e2d67761f5026bc3943c1d0 277 Pfam PF01032 FecCD transport family 8 250 2.8E-44 T 10-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VF_A0826 9949107a5e2d67761f5026bc3943c1d0 277 SUPERFAMILY SSF81345 4 251 9.94E-45 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_A0161 6c8c64397ff286e25e5b4cbcc9f5c571 591 Pfam PF04183 IucA / IucC family 141 376 1.3E-59 T 10-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 VF_A0161 6c8c64397ff286e25e5b4cbcc9f5c571 591 Gene3D G3DSA:1.10.510.40 365 537 7.5E-14 T 10-10-2018 VF_A0161 6c8c64397ff286e25e5b4cbcc9f5c571 591 Pfam PF06276 Ferric iron reductase FhuF-like transporter 406 567 2.1E-27 T 10-10-2018 IPR022770 Ferric iron reductase FhuF domain VF_A0381 451dcd39dc2927e59ee6957cb5d656cc 384 SMART SM00267 201 383 6.0E-32 T 10-10-2018 IPR000160 GGDEF domain VF_A0381 451dcd39dc2927e59ee6957cb5d656cc 384 Pfam PF00990 Diguanylate cyclase, GGDEF domain 212 312 1.9E-22 T 10-10-2018 IPR000160 GGDEF domain VF_A0381 451dcd39dc2927e59ee6957cb5d656cc 384 Pfam PF00990 Diguanylate cyclase, GGDEF domain 337 380 4.8E-6 T 10-10-2018 IPR000160 GGDEF domain VF_A0381 451dcd39dc2927e59ee6957cb5d656cc 384 SUPERFAMILY SSF55073 217 382 2.04E-34 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0381 451dcd39dc2927e59ee6957cb5d656cc 384 Gene3D G3DSA:3.30.70.270 205 383 2.4E-44 T 10-10-2018 VF_A0381 451dcd39dc2927e59ee6957cb5d656cc 384 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 211 317 3.5E-25 T 10-10-2018 IPR000160 GGDEF domain VF_A0958 f1da4c7a1ff8bc28a9a9d8b12d431708 247 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 7 234 2.5E-38 T 10-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 VF_A0958 f1da4c7a1ff8bc28a9a9d8b12d431708 247 SUPERFAMILY SSF51695 3 237 6.02E-65 T 10-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 VF_A0958 f1da4c7a1ff8bc28a9a9d8b12d431708 247 Gene3D G3DSA:3.20.20.190 1 244 4.9E-72 T 10-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 VF_0111 ebbadc990ee914336b251b7094970c3d 238 Gene3D G3DSA:3.30.230.70 13 238 3.8E-65 T 10-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VF_0111 ebbadc990ee914336b251b7094970c3d 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 10-10-2018 IPR018336 Ribonuclease PH, conserved site VF_0111 ebbadc990ee914336b251b7094970c3d 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 4.0E-116 T 10-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 VF_0111 ebbadc990ee914336b251b7094970c3d 238 SUPERFAMILY SSF55666 153 237 6.68E-27 T 10-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VF_0111 ebbadc990ee914336b251b7094970c3d 238 SUPERFAMILY SSF54211 1 181 3.29E-47 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_0111 ebbadc990ee914336b251b7094970c3d 238 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 45.126 T 10-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 VF_0111 ebbadc990ee914336b251b7094970c3d 238 Pfam PF03725 3' exoribonuclease family, domain 2 159 223 1.0E-10 T 10-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VF_0111 ebbadc990ee914336b251b7094970c3d 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 2.5E-25 T 10-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VF_A0049 1ca9f40d4f32d4c068d864417cc352aa 131 Pfam PF12840 Helix-turn-helix domain 9 67 6.3E-8 T 10-10-2018 VF_A0049 1ca9f40d4f32d4c068d864417cc352aa 131 Gene3D G3DSA:1.10.10.10 2 91 9.3E-16 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0049 1ca9f40d4f32d4c068d864417cc352aa 131 SUPERFAMILY SSF46785 1 79 1.25E-15 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0049 1ca9f40d4f32d4c068d864417cc352aa 131 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 74 3.2E-12 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_A0049 1ca9f40d4f32d4c068d864417cc352aa 131 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 59 3.2E-12 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_A0049 1ca9f40d4f32d4c068d864417cc352aa 131 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 3.2E-12 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_A0049 1ca9f40d4f32d4c068d864417cc352aa 131 SMART SM00418 8 87 1.3E-11 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 351 488 4.0E-17 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 SUPERFAMILY SSF54211 594 769 8.72E-59 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_0798 86e53807d89b1adc18c0ab0168211d49 784 Gene3D G3DSA:2.30.130.40 1 116 4.9E-35 T 10-10-2018 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 569 771 1.6E-97 T 10-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 TIGRFAM TIGR00763 lon: endopeptidase La 12 770 4.8E-304 T 10-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 Hamap MF_01973 Lon protease [lon]. 11 771 71.214 T 10-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 SUPERFAMILY SSF52540 312 585 3.08E-52 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0798 86e53807d89b1adc18c0ab0168211d49 784 SMART SM00464 10 201 1.9E-78 T 10-10-2018 IPR003111 Lon, substrate-binding domain VF_0798 86e53807d89b1adc18c0ab0168211d49 784 PIRSF PIRSF001174 1 774 0.0 T 10-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 Gene3D G3DSA:3.40.50.300 312 489 5.0E-60 T 10-10-2018 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 SMART SM00382 347 491 6.1E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0798 86e53807d89b1adc18c0ab0168211d49 784 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 200 3.7E-41 T 10-10-2018 IPR003111 Lon, substrate-binding domain VF_0798 86e53807d89b1adc18c0ab0168211d49 784 Gene3D G3DSA:1.10.8.60 490 583 3.0E-33 T 10-10-2018 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 SUPERFAMILY SSF88697 10 200 3.48E-49 T 10-10-2018 IPR015947 PUA-like superfamily VF_0798 86e53807d89b1adc18c0ab0168211d49 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 672 691 2.5E-56 T 10-10-2018 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 702 721 2.5E-56 T 10-10-2018 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 355 374 2.5E-56 T 10-10-2018 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 594 610 2.5E-56 T 10-10-2018 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 725 743 2.5E-56 T 10-10-2018 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 Gene3D G3DSA:1.20.58.1480 119 244 2.3E-45 T 10-10-2018 VF_0798 86e53807d89b1adc18c0ab0168211d49 784 Gene3D G3DSA:3.30.230.10 584 771 1.9E-85 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_2419 4b077e1bd3e9874436cf972bf2cff802 142 SMART SM00649 9 141 4.7E-83 T 10-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 VF_2419 4b077e1bd3e9874436cf972bf2cff802 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 71 7.0E-15 T 10-10-2018 VF_2419 4b077e1bd3e9874436cf972bf2cff802 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.715 T 10-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 VF_2419 4b077e1bd3e9874436cf972bf2cff802 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 10-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_2419 4b077e1bd3e9874436cf972bf2cff802 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 3.8E-30 T 10-10-2018 IPR020784 Ribosomal protein L11, N-terminal VF_2419 4b077e1bd3e9874436cf972bf2cff802 142 Gene3D G3DSA:1.10.10.250 73 141 2.2E-25 T 10-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily VF_2419 4b077e1bd3e9874436cf972bf2cff802 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 1.2E-63 T 10-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2419 4b077e1bd3e9874436cf972bf2cff802 142 Gene3D G3DSA:3.30.1550.10 2 72 7.7E-35 T 10-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily VF_2419 4b077e1bd3e9874436cf972bf2cff802 142 SUPERFAMILY SSF54747 3 73 1.96E-30 T 10-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily VF_2419 4b077e1bd3e9874436cf972bf2cff802 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 4.2E-23 T 10-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 VF_2419 4b077e1bd3e9874436cf972bf2cff802 142 SUPERFAMILY SSF46906 68 141 5.23E-25 T 10-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily VF_1021 e0d150547f1cd15514d5e3607dc76d70 316 SUPERFAMILY SSF53335 6 292 1.65E-47 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_1021 e0d150547f1cd15514d5e3607dc76d70 316 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 25 314 2.2E-145 T 10-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 VF_1021 e0d150547f1cd15514d5e3607dc76d70 316 Gene3D G3DSA:3.40.50.150 91 294 2.9E-41 T 10-10-2018 VF_1060 31e65f928486ef4f361e5a237a147b81 409 TIGRFAM TIGR01882 peptidase-T: peptidase T 2 400 3.5E-102 T 10-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 VF_1060 31e65f928486ef4f361e5a237a147b81 409 Pfam PF01546 Peptidase family M20/M25/M40 138 400 1.6E-9 T 10-10-2018 IPR002933 Peptidase M20 GO:0016787 VF_1060 31e65f928486ef4f361e5a237a147b81 409 SUPERFAMILY SSF55031 209 318 8.06E-29 T 10-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VF_1060 31e65f928486ef4f361e5a237a147b81 409 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 137 176 - T 10-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VF_1060 31e65f928486ef4f361e5a237a147b81 409 Gene3D G3DSA:3.40.630.10 3 398 7.1E-131 T 10-10-2018 VF_1060 31e65f928486ef4f361e5a237a147b81 409 SUPERFAMILY SSF53187 2 404 1.66E-64 T 10-10-2018 VF_1060 31e65f928486ef4f361e5a237a147b81 409 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 75 84 - T 10-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VF_1060 31e65f928486ef4f361e5a237a147b81 409 PIRSF PIRSF037215 1 407 2.5E-158 T 10-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 VF_1060 31e65f928486ef4f361e5a237a147b81 409 Gene3D G3DSA:3.30.70.360 209 318 7.1E-131 T 10-10-2018 VF_0864 75c4cb396a037957a0b50e8a6d473801 574 SUPERFAMILY SSF52540 48 361 7.71E-39 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0864 75c4cb396a037957a0b50e8a6d473801 574 Pfam PF00271 Helicase conserved C-terminal domain 239 342 1.0E-12 T 10-10-2018 IPR001650 Helicase, C-terminal VF_0864 75c4cb396a037957a0b50e8a6d473801 574 Gene3D G3DSA:3.40.50.300 188 378 1.8E-32 T 10-10-2018 VF_0864 75c4cb396a037957a0b50e8a6d473801 574 SUPERFAMILY SSF57829 424 466 1.72E-6 T 10-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 VF_0864 75c4cb396a037957a0b50e8a6d473801 574 Pfam PF04851 Type III restriction enzyme, res subunit 2 154 3.2E-24 T 10-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 VF_0864 75c4cb396a037957a0b50e8a6d473801 574 SMART SM00487 1 178 6.5E-14 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_0864 75c4cb396a037957a0b50e8a6d473801 574 SMART SM00490 262 344 1.9E-11 T 10-10-2018 IPR001650 Helicase, C-terminal VF_0864 75c4cb396a037957a0b50e8a6d473801 574 Gene3D G3DSA:3.40.50.300 1 165 2.1E-30 T 10-10-2018 VF_A0123 270f032befb832f24c1ab5d3b743d92e 488 Pfam PF00854 POT family 75 442 2.8E-66 T 10-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 VF_A0123 270f032befb832f24c1ab5d3b743d92e 488 SUPERFAMILY SSF103473 6 483 1.44E-26 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0123 270f032befb832f24c1ab5d3b743d92e 488 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 4 471 2.2E-85 T 10-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 VF_A0123 270f032befb832f24c1ab5d3b743d92e 488 Gene3D G3DSA:1.20.1250.20 2 487 4.7E-116 T 10-10-2018 VF_2206 5daa02c7cf6cbc6cc8bc7a891fb52fec 493 SUPERFAMILY SSF53244 337 489 9.03E-49 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VF_2206 5daa02c7cf6cbc6cc8bc7a891fb52fec 493 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 19 489 1.1E-163 T 10-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 VF_2206 5daa02c7cf6cbc6cc8bc7a891fb52fec 493 Pfam PF08245 Mur ligase middle domain 112 316 2.9E-49 T 10-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VF_2206 5daa02c7cf6cbc6cc8bc7a891fb52fec 493 Pfam PF01225 Mur ligase family, catalytic domain 20 79 8.0E-15 T 10-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 VF_2206 5daa02c7cf6cbc6cc8bc7a891fb52fec 493 Gene3D G3DSA:3.90.190.20 344 492 5.3E-55 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VF_2206 5daa02c7cf6cbc6cc8bc7a891fb52fec 493 Gene3D G3DSA:3.40.1190.10 104 340 2.7E-76 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VF_2206 5daa02c7cf6cbc6cc8bc7a891fb52fec 493 Pfam PF02875 Mur ligase family, glutamate ligase domain 339 420 1.6E-20 T 10-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VF_2206 5daa02c7cf6cbc6cc8bc7a891fb52fec 493 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 2 489 33.461 T 10-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 VF_2206 5daa02c7cf6cbc6cc8bc7a891fb52fec 493 SUPERFAMILY SSF53623 105 334 1.2E-71 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VF_2206 5daa02c7cf6cbc6cc8bc7a891fb52fec 493 Gene3D G3DSA:3.40.1390.10 1 102 5.0E-30 T 10-10-2018 VF_2206 5daa02c7cf6cbc6cc8bc7a891fb52fec 493 SUPERFAMILY SSF63418 2 101 4.71E-26 T 10-10-2018 IPR035911 MurE/MurF, N-terminal VF_2424 b4ef3253affc967b26dc68234fe8c355 307 Hamap MF_00215 Pantothenate kinase [coaA]. 1 307 163.631 T 10-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 VF_2424 b4ef3253affc967b26dc68234fe8c355 307 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 82 225 1.4E-12 T 10-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 VF_2424 b4ef3253affc967b26dc68234fe8c355 307 SUPERFAMILY SSF52540 2 307 4.58E-71 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2424 b4ef3253affc967b26dc68234fe8c355 307 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 3 307 5.5E-138 T 10-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 VF_2424 b4ef3253affc967b26dc68234fe8c355 307 PIRSF PIRSF000545 1 307 4.9E-137 T 10-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 VF_2424 b4ef3253affc967b26dc68234fe8c355 307 Gene3D G3DSA:3.40.50.300 1 307 1.0E-89 T 10-10-2018 VF_A0110 542f4192b4cf07014784711e0586f34d 316 Gene3D G3DSA:2.40.30.170 30 312 7.5E-28 T 10-10-2018 VF_A0110 542f4192b4cf07014784711e0586f34d 316 Gene3D G3DSA:1.10.287.470 66 195 7.5E-28 T 10-10-2018 VF_A0110 542f4192b4cf07014784711e0586f34d 316 SUPERFAMILY SSF111369 100 157 1.06E-6 T 10-10-2018 VF_A0110 542f4192b4cf07014784711e0586f34d 316 Pfam PF13437 HlyD family secretion protein 195 277 5.8E-6 T 10-10-2018 VF_A0110 542f4192b4cf07014784711e0586f34d 316 SUPERFAMILY SSF111369 35 90 3.14E-5 T 10-10-2018 VF_A0110 542f4192b4cf07014784711e0586f34d 316 Gene3D G3DSA:2.40.50.100 32 230 7.5E-28 T 10-10-2018 VF_A0110 542f4192b4cf07014784711e0586f34d 316 Pfam PF13533 Biotin-lipoyl like 44 76 2.9E-6 T 10-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VF_2165 3bbde55bacb119567b660123080120b8 149 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 109 141 1.1E-9 T 10-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 VF_2165 3bbde55bacb119567b660123080120b8 149 Gene3D G3DSA:1.20.120.910 18 148 2.5E-33 T 10-10-2018 VF_2165 3bbde55bacb119567b660123080120b8 149 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 26 148 29.009 T 10-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 VF_2165 3bbde55bacb119567b660123080120b8 149 SUPERFAMILY SSF57716 109 147 1.85E-9 T 10-10-2018 VF_2165 3bbde55bacb119567b660123080120b8 149 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 112 136 - T 10-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site VF_2165 3bbde55bacb119567b660123080120b8 149 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 30 138 5.3E-50 T 10-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 VF_2165 3bbde55bacb119567b660123080120b8 149 SUPERFAMILY SSF109635 9 107 6.8E-35 T 10-10-2018 IPR037187 DksA, N-terminal domain superfamily VF_0539 dee755a23b229bdb6d8c6769947ca8df 595 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 551 568 - T 10-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VF_0539 dee755a23b229bdb6d8c6769947ca8df 595 Pfam PF00682 HMGL-like 6 269 3.5E-58 T 10-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 VF_0539 dee755a23b229bdb6d8c6769947ca8df 595 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 7 589 2.7E-267 T 10-10-2018 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 VF_0539 dee755a23b229bdb6d8c6769947ca8df 595 Pfam PF02436 Conserved carboxylase domain 292 494 4.7E-59 T 10-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 VF_0539 dee755a23b229bdb6d8c6769947ca8df 595 SUPERFAMILY SSF51230 522 594 4.45E-20 T 10-10-2018 IPR011053 Single hybrid motif VF_0539 dee755a23b229bdb6d8c6769947ca8df 595 Gene3D G3DSA:3.20.20.70 1 462 3.2E-175 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0539 dee755a23b229bdb6d8c6769947ca8df 595 Gene3D G3DSA:2.40.50.100 520 595 1.7E-22 T 10-10-2018 VF_0539 dee755a23b229bdb6d8c6769947ca8df 595 Pfam PF00364 Biotin-requiring enzyme 529 593 1.3E-17 T 10-10-2018 IPR000089 Biotin/lipoyl attachment VF_0539 dee755a23b229bdb6d8c6769947ca8df 595 SUPERFAMILY SSF89000 297 457 6.28E-51 T 10-10-2018 VF_0539 dee755a23b229bdb6d8c6769947ca8df 595 SUPERFAMILY SSF51569 1 300 1.54E-90 T 10-10-2018 VF_0251 1fec8fe7c361e8a83059cc2c717db883 130 Gene3D G3DSA:3.30.1370.30 2 72 4.5E-26 T 10-10-2018 VF_0251 1fec8fe7c361e8a83059cc2c717db883 130 SUPERFAMILY SSF56047 2 129 1.1E-43 T 10-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0251 1fec8fe7c361e8a83059cc2c717db883 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 30.861 T 10-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0251 1fec8fe7c361e8a83059cc2c717db883 130 Gene3D G3DSA:3.30.1490.10 73 130 1.9E-24 T 10-10-2018 VF_0251 1fec8fe7c361e8a83059cc2c717db883 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 10-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0251 1fec8fe7c361e8a83059cc2c717db883 130 Pfam PF00410 Ribosomal protein S8 5 129 5.0E-46 T 10-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_2493 b8b998259c4448314aa15538ebe08b75 161 Pfam PF00085 Thioredoxin 50 151 1.2E-10 T 10-10-2018 IPR013766 Thioredoxin domain GO:0045454 VF_2493 b8b998259c4448314aa15538ebe08b75 161 ProSitePatterns PS00194 Thioredoxin family active site. 60 78 - T 10-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VF_2493 b8b998259c4448314aa15538ebe08b75 161 Gene3D G3DSA:3.40.30.10 20 158 6.5E-21 T 10-10-2018 VF_2493 b8b998259c4448314aa15538ebe08b75 161 SUPERFAMILY SSF52833 33 157 9.93E-25 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_0800 6d0527284fd9ea72dca4fbbcf9232770 618 Gene3D G3DSA:1.10.4030.30 42 171 1.7E-12 T 10-10-2018 VF_0800 6d0527284fd9ea72dca4fbbcf9232770 618 Pfam PF00639 PPIC-type PPIASE domain 282 359 1.2E-21 T 10-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 VF_0800 6d0527284fd9ea72dca4fbbcf9232770 618 SUPERFAMILY SSF109998 41 240 5.89E-34 T 10-10-2018 IPR027304 Trigger factor/SurA domain superfamily VF_0800 6d0527284fd9ea72dca4fbbcf9232770 618 Gene3D G3DSA:1.10.4030.30 242 367 2.8E-30 T 10-10-2018 VF_0800 6d0527284fd9ea72dca4fbbcf9232770 618 Gene3D G3DSA:3.10.50.40 269 362 2.8E-30 T 10-10-2018 VF_0800 6d0527284fd9ea72dca4fbbcf9232770 618 Pfam PF13624 SurA N-terminal domain 1 165 3.2E-49 T 10-10-2018 VF_0800 6d0527284fd9ea72dca4fbbcf9232770 618 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 298 319 - T 10-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 VF_0800 6d0527284fd9ea72dca4fbbcf9232770 618 SUPERFAMILY SSF54534 225 359 8.5E-27 T 10-10-2018 VF_0948 925ba06e016b29a5bb478da8e25a0399 242 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 3 242 43.394 T 10-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 VF_0948 925ba06e016b29a5bb478da8e25a0399 242 Pfam PF13649 Methyltransferase domain 60 158 5.8E-13 T 10-10-2018 VF_0948 925ba06e016b29a5bb478da8e25a0399 242 PIRSF PIRSF006325 1 242 2.4E-121 T 10-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 VF_0948 925ba06e016b29a5bb478da8e25a0399 242 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 5 242 5.2E-116 T 10-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 VF_0948 925ba06e016b29a5bb478da8e25a0399 242 Gene3D G3DSA:3.40.50.150 18 242 5.7E-62 T 10-10-2018 VF_0948 925ba06e016b29a5bb478da8e25a0399 242 SUPERFAMILY SSF53335 20 242 6.1E-39 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_A0005 171dc65806d9269c70becaf85f9d886e 378 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 236 362 34.905 T 10-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VF_A0005 171dc65806d9269c70becaf85f9d886e 378 Pfam PF01641 SelR domain 243 360 2.8E-46 T 10-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VF_A0005 171dc65806d9269c70becaf85f9d886e 378 Gene3D G3DSA:2.170.150.20 232 378 8.5E-57 T 10-10-2018 VF_A0005 171dc65806d9269c70becaf85f9d886e 378 Pfam PF01625 Peptide methionine sulfoxide reductase 42 192 3.7E-56 T 10-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VF_A0005 171dc65806d9269c70becaf85f9d886e 378 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 41 191 1.1E-51 T 10-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VF_A0005 171dc65806d9269c70becaf85f9d886e 378 SUPERFAMILY SSF55068 8 204 1.03E-72 T 10-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VF_A0005 171dc65806d9269c70becaf85f9d886e 378 SUPERFAMILY SSF51316 238 377 1.2E-57 T 10-10-2018 IPR011057 Mss4-like superfamily VF_A0005 171dc65806d9269c70becaf85f9d886e 378 Gene3D G3DSA:3.30.1060.10 18 200 1.5E-62 T 10-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VF_A0005 171dc65806d9269c70becaf85f9d886e 378 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 39 198 35.874 T 10-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VF_A0005 171dc65806d9269c70becaf85f9d886e 378 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 237 370 5.0E-60 T 10-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VF_A0325 e9b9fa87e952d25846a5285fb95a312c 561 Gene3D G3DSA:1.10.287.950 229 561 4.9E-67 T 10-10-2018 VF_A0325 e9b9fa87e952d25846a5285fb95a312c 561 SMART SM01049 52 137 1.9E-14 T 10-10-2018 IPR033480 Single Cache domain 2 VF_A0325 e9b9fa87e952d25846a5285fb95a312c 561 Pfam PF17200 Single Cache domain 2 56 196 3.5E-26 T 10-10-2018 IPR033480 Single Cache domain 2 VF_A0325 e9b9fa87e952d25846a5285fb95a312c 561 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 344 525 5.8E-38 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0325 e9b9fa87e952d25846a5285fb95a312c 561 Gene3D G3DSA:3.30.450.20 46 187 8.8E-32 T 10-10-2018 VF_A0325 e9b9fa87e952d25846a5285fb95a312c 561 SUPERFAMILY SSF58104 252 561 4.58E-70 T 10-10-2018 VF_A0325 e9b9fa87e952d25846a5285fb95a312c 561 SMART SM00304 230 284 1.1E-6 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0325 e9b9fa87e952d25846a5285fb95a312c 561 SMART SM00283 299 560 3.8E-66 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_2543 1d29bb74f47b3916f96a067b2acc3d32 170 SUPERFAMILY SSF56420 3 165 1.83E-61 T 10-10-2018 IPR036821 Peptide deformylase superfamily VF_2543 1d29bb74f47b3916f96a067b2acc3d32 170 Pfam PF01327 Polypeptide deformylase 5 152 1.3E-48 T 10-10-2018 IPR023635 Peptide deformylase VF_2543 1d29bb74f47b3916f96a067b2acc3d32 170 PIRSF PIRSF004749 1 170 5.3E-56 T 10-10-2018 IPR023635 Peptide deformylase VF_2543 1d29bb74f47b3916f96a067b2acc3d32 170 PRINTS PR01576 Peptide deformylase signature 120 149 1.4E-36 T 10-10-2018 IPR023635 Peptide deformylase VF_2543 1d29bb74f47b3916f96a067b2acc3d32 170 PRINTS PR01576 Peptide deformylase signature 89 100 1.4E-36 T 10-10-2018 IPR023635 Peptide deformylase VF_2543 1d29bb74f47b3916f96a067b2acc3d32 170 PRINTS PR01576 Peptide deformylase signature 101 119 1.4E-36 T 10-10-2018 IPR023635 Peptide deformylase VF_2543 1d29bb74f47b3916f96a067b2acc3d32 170 PRINTS PR01576 Peptide deformylase signature 33 62 1.4E-36 T 10-10-2018 IPR023635 Peptide deformylase VF_2543 1d29bb74f47b3916f96a067b2acc3d32 170 Gene3D G3DSA:3.90.45.10 1 169 1.5E-65 T 10-10-2018 IPR036821 Peptide deformylase superfamily VF_2543 1d29bb74f47b3916f96a067b2acc3d32 170 Hamap MF_00163 Peptide deformylase [def]. 2 162 30.681 T 10-10-2018 IPR023635 Peptide deformylase VF_2543 1d29bb74f47b3916f96a067b2acc3d32 170 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 160 7.2E-59 T 10-10-2018 IPR023635 Peptide deformylase VF_1649 8ee9980a56cd7ba69f45e77d3e904352 75 Hamap MF_00816 UPF0352 protein YejL [yejL]. 1 71 25.453 T 10-10-2018 IPR009857 Uncharacterised protein family UPF0352 VF_1649 8ee9980a56cd7ba69f45e77d3e904352 75 Pfam PF07208 Protein of unknown function (DUF1414) 26 69 9.5E-23 T 10-10-2018 IPR009857 Uncharacterised protein family UPF0352 VF_1649 8ee9980a56cd7ba69f45e77d3e904352 75 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 1 69 2.0E-33 T 10-10-2018 IPR009857 Uncharacterised protein family UPF0352 VF_1649 8ee9980a56cd7ba69f45e77d3e904352 75 Gene3D G3DSA:1.10.3390.10 1 75 1.1E-32 T 10-10-2018 IPR023202 YejL-like superfamily VF_1649 8ee9980a56cd7ba69f45e77d3e904352 75 SUPERFAMILY SSF158651 1 75 3.92E-30 T 10-10-2018 IPR023202 YejL-like superfamily VF_1649 8ee9980a56cd7ba69f45e77d3e904352 75 PIRSF PIRSF006188 1 72 1.3E-35 T 10-10-2018 IPR009857 Uncharacterised protein family UPF0352 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 SUPERFAMILY SSF53738 250 379 2.79E-30 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 Gene3D G3DSA:3.40.120.10 263 370 1.3E-58 T 10-10-2018 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 SUPERFAMILY SSF53738 2 187 4.32E-41 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 Gene3D G3DSA:3.40.120.10 171 365 1.3E-58 T 10-10-2018 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 2 138 2.8E-37 T 10-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 162 262 8.3E-23 T 10-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 Gene3D G3DSA:3.40.120.10 1 170 5.6E-45 T 10-10-2018 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 267 378 3.7E-26 T 10-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 Gene3D G3DSA:3.30.310.50 381 469 3.8E-16 T 10-10-2018 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 1.2E-10 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 214 227 1.2E-10 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 242 257 1.2E-10 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 180 199 1.2E-10 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 416 465 8.3E-9 T 10-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_2148 b6b50b48f9a8506346cdca74482a756d 470 SUPERFAMILY SSF55957 374 466 1.14E-17 T 10-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_A0604 2b45c60c02252b9c31219f5bda113afb 217 Pfam PF04337 Protein of unknown function, DUF480 5 157 1.7E-61 T 10-10-2018 IPR007432 Protein of unknown function DUF480 VF_A0604 2b45c60c02252b9c31219f5bda113afb 217 SUPERFAMILY SSF46785 89 171 1.14E-28 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0604 2b45c60c02252b9c31219f5bda113afb 217 SUPERFAMILY SSF46785 2 83 2.45E-29 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0604 2b45c60c02252b9c31219f5bda113afb 217 Gene3D G3DSA:1.10.10.10 94 173 7.5E-28 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0604 2b45c60c02252b9c31219f5bda113afb 217 Gene3D G3DSA:1.10.10.10 1 90 3.0E-33 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0604 2b45c60c02252b9c31219f5bda113afb 217 Hamap MF_01584 UPF0502 protein YceH [yceH]. 4 216 33.355 T 10-10-2018 IPR007432 Protein of unknown function DUF480 VF_A0706 69b98a169414b917aa60958464b8aec6 677 SMART SM00052 418 660 2.9E-61 T 10-10-2018 IPR001633 EAL domain VF_A0706 69b98a169414b917aa60958464b8aec6 677 Gene3D G3DSA:3.20.20.450 417 673 3.8E-65 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0706 69b98a169414b917aa60958464b8aec6 677 Pfam PF00563 EAL domain 424 655 1.2E-60 T 10-10-2018 IPR001633 EAL domain VF_A0706 69b98a169414b917aa60958464b8aec6 677 SUPERFAMILY SSF141868 424 668 1.16E-64 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0706 69b98a169414b917aa60958464b8aec6 677 Pfam PF02378 Phosphotransferase system, EIIC 23 314 3.2E-16 T 10-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VF_0907 0aab2db8c1be107327ff2ed9fd8da61a 448 SUPERFAMILY SSF52540 12 235 2.26E-43 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0907 0aab2db8c1be107327ff2ed9fd8da61a 448 Gene3D G3DSA:1.20.272.10 242 346 2.0E-43 T 10-10-2018 VF_0907 0aab2db8c1be107327ff2ed9fd8da61a 448 Pfam PF16193 AAA C-terminal domain 190 268 1.0E-19 T 10-10-2018 IPR032423 AAA C-terminal domain VF_0907 0aab2db8c1be107327ff2ed9fd8da61a 448 Pfam PF12002 MgsA AAA+ ATPase C terminal 269 435 4.8E-66 T 10-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal VF_0907 0aab2db8c1be107327ff2ed9fd8da61a 448 Gene3D G3DSA:1.10.3710.10 347 448 1.3E-36 T 10-10-2018 VF_0907 0aab2db8c1be107327ff2ed9fd8da61a 448 Gene3D G3DSA:3.40.50.300 2 165 1.5E-47 T 10-10-2018 VF_0907 0aab2db8c1be107327ff2ed9fd8da61a 448 Gene3D G3DSA:1.10.8.60 166 241 8.2E-21 T 10-10-2018 VF_0907 0aab2db8c1be107327ff2ed9fd8da61a 448 SUPERFAMILY SSF48019 253 435 1.81E-72 T 10-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 VF_0907 0aab2db8c1be107327ff2ed9fd8da61a 448 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 54 159 1.5E-16 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VF_0907 0aab2db8c1be107327ff2ed9fd8da61a 448 SMART SM00382 50 166 8.1E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0279 80420c5d194ef73ee326e49995dcb5dd 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 2.0E-18 T 10-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0279 80420c5d194ef73ee326e49995dcb5dd 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 3.8E-39 T 10-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0279 80420c5d194ef73ee326e49995dcb5dd 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 3.8E-39 T 10-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0279 80420c5d194ef73ee326e49995dcb5dd 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 3.8E-39 T 10-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0279 80420c5d194ef73ee326e49995dcb5dd 85 Pfam PF01016 Ribosomal L27 protein 2 82 1.5E-39 T 10-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0279 80420c5d194ef73ee326e49995dcb5dd 85 SUPERFAMILY SSF110324 2 80 1.46E-34 T 10-10-2018 VF_0279 80420c5d194ef73ee326e49995dcb5dd 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 2.0E-43 T 10-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0279 80420c5d194ef73ee326e49995dcb5dd 85 Gene3D G3DSA:2.40.50.100 21 85 1.5E-31 T 10-10-2018 VF_0279 80420c5d194ef73ee326e49995dcb5dd 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 10-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0279 80420c5d194ef73ee326e49995dcb5dd 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.397 T 10-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0894 501e5f2cb644b195d865e5a6e77f1fed 299 Pfam PF03956 Lysine exporter LysO 112 297 5.4E-54 T 10-10-2018 IPR005642 Lysine exporter LysO VF_0894 501e5f2cb644b195d865e5a6e77f1fed 299 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 162 299 2.0E-72 T 10-10-2018 IPR005642 Lysine exporter LysO VF_0127 7af678d3744795c1708c2042827407fa 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.118 T 10-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0127 7af678d3744795c1708c2042827407fa 78 Gene3D G3DSA:2.30.170.40 2 78 2.7E-32 T 10-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0127 7af678d3744795c1708c2042827407fa 78 Pfam PF00830 Ribosomal L28 family 3 62 8.4E-26 T 10-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0127 7af678d3744795c1708c2042827407fa 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 3.3E-27 T 10-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0127 7af678d3744795c1708c2042827407fa 78 SUPERFAMILY SSF143800 2 76 2.35E-29 T 10-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0140 6ae9f25af524dc0aa74bacae1a8371f5 396 Pfam PF02719 Polysaccharide biosynthesis protein 36 301 1.1E-44 T 10-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain VF_0140 6ae9f25af524dc0aa74bacae1a8371f5 396 SUPERFAMILY SSF51735 34 307 7.68E-28 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0140 6ae9f25af524dc0aa74bacae1a8371f5 396 Gene3D G3DSA:3.90.25.40 201 311 3.4E-167 T 10-10-2018 VF_0140 6ae9f25af524dc0aa74bacae1a8371f5 396 Gene3D G3DSA:3.40.50.720 9 371 3.4E-167 T 10-10-2018 VF_1573 4dd4934f2df6dffd3c9b815247409b3a 195 Pfam PF04993 TfoX N-terminal domain 12 101 1.0E-27 T 10-10-2018 IPR007076 TfoX, N-terminal VF_1573 4dd4934f2df6dffd3c9b815247409b3a 195 Gene3D G3DSA:1.10.150.20 115 195 2.2E-24 T 10-10-2018 VF_1573 4dd4934f2df6dffd3c9b815247409b3a 195 PIRSF PIRSF028788 1 195 3.0E-45 T 10-10-2018 IPR026256 Transcriptional regulator, TfoX/Sxy-type VF_1573 4dd4934f2df6dffd3c9b815247409b3a 195 SUPERFAMILY SSF159894 6 104 6.54E-30 T 10-10-2018 VF_1573 4dd4934f2df6dffd3c9b815247409b3a 195 Pfam PF04994 TfoX C-terminal domain 116 194 2.6E-31 T 10-10-2018 IPR007077 TfoX, C-terminal VF_1573 4dd4934f2df6dffd3c9b815247409b3a 195 Gene3D G3DSA:3.30.1460.30 1 105 1.7E-33 T 10-10-2018 VF_0656 4f6dd82f589b4cc90bf296c63fa54079 161 SUPERFAMILY SSF54534 82 160 1.44E-10 T 10-10-2018 VF_0656 4f6dd82f589b4cc90bf296c63fa54079 161 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 84 160 3.8E-10 T 10-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 VF_0656 4f6dd82f589b4cc90bf296c63fa54079 161 Gene3D G3DSA:3.10.50.30 79 161 2.3E-9 T 10-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 VF_A0700 5920a9753dbae37ac931b92490dd73ad 372 Gene3D G3DSA:3.30.1360.120 7 231 6.6E-83 T 10-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 VF_A0700 5920a9753dbae37ac931b92490dd73ad 372 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 5 366 1.7E-106 T 10-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 VF_A0700 5920a9753dbae37ac931b92490dd73ad 372 Pfam PF01571 Aminomethyltransferase folate-binding domain 10 255 3.7E-87 T 10-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain VF_A0700 5920a9753dbae37ac931b92490dd73ad 372 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 269 362 4.7E-22 T 10-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 VF_A0700 5920a9753dbae37ac931b92490dd73ad 372 SUPERFAMILY SSF103025 4 281 3.3E-89 T 10-10-2018 VF_A0700 5920a9753dbae37ac931b92490dd73ad 372 Gene3D G3DSA:3.30.70.1400 56 139 6.6E-83 T 10-10-2018 VF_A0700 5920a9753dbae37ac931b92490dd73ad 372 Gene3D G3DSA:4.10.1250.10 233 281 1.7E-21 T 10-10-2018 VF_A0700 5920a9753dbae37ac931b92490dd73ad 372 Gene3D G3DSA:2.40.30.110 284 361 4.8E-28 T 10-10-2018 VF_A0700 5920a9753dbae37ac931b92490dd73ad 372 SUPERFAMILY SSF101790 279 371 4.91E-27 T 10-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal VF_A0700 5920a9753dbae37ac931b92490dd73ad 372 PIRSF PIRSF006487 1 372 5.0E-82 T 10-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 VF_0230 ead8efbff63e01ffcc386e07e308774f 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.535 T 10-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0230 ead8efbff63e01ffcc386e07e308774f 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 2.2E-70 T 10-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0230 ead8efbff63e01ffcc386e07e308774f 124 SUPERFAMILY SSF50249 3 123 5.23E-52 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_0230 ead8efbff63e01ffcc386e07e308774f 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0230 ead8efbff63e01ffcc386e07e308774f 124 Pfam PF00164 Ribosomal protein S12/S23 12 123 1.9E-42 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0230 ead8efbff63e01ffcc386e07e308774f 124 PIRSF PIRSF002133 1 124 4.4E-54 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0230 ead8efbff63e01ffcc386e07e308774f 124 Gene3D G3DSA:2.40.50.140 1 124 1.3E-63 T 10-10-2018 VF_0230 ead8efbff63e01ffcc386e07e308774f 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 3.7E-60 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0230 ead8efbff63e01ffcc386e07e308774f 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 3.7E-60 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0230 ead8efbff63e01ffcc386e07e308774f 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 3.7E-60 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0230 ead8efbff63e01ffcc386e07e308774f 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 3.7E-60 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0230 ead8efbff63e01ffcc386e07e308774f 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 3.7E-60 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0230 ead8efbff63e01ffcc386e07e308774f 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 3.7E-60 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0732 aaba56eeeaebd6210382abc4d08a604f 344 Gene3D G3DSA:3.10.520.20 28 344 6.8E-111 T 10-10-2018 VF_0732 aaba56eeeaebd6210382abc4d08a604f 344 SUPERFAMILY SSF143631 34 343 4.45E-100 T 10-10-2018 IPR003374 ApbE-like superfamily VF_0732 aaba56eeeaebd6210382abc4d08a604f 344 Pfam PF02424 ApbE family 42 321 6.3E-84 T 10-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 VF_0732 aaba56eeeaebd6210382abc4d08a604f 344 PIRSF PIRSF006268 8 344 7.5E-93 T 10-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 VF_1157 0a489ddf3e9e919447da0277cb826f3b 515 SUPERFAMILY SSF47090 221 264 3.45E-10 T 10-10-2018 IPR036365 PGBD-like superfamily VF_1157 0a489ddf3e9e919447da0277cb826f3b 515 Pfam PF03734 L,D-transpeptidase catalytic domain 283 451 4.3E-32 T 10-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 VF_1157 0a489ddf3e9e919447da0277cb826f3b 515 Pfam PF01471 Putative peptidoglycan binding domain 222 255 5.3E-7 T 10-10-2018 IPR002477 Peptidoglycan binding-like VF_1157 0a489ddf3e9e919447da0277cb826f3b 515 SUPERFAMILY SSF141523 281 441 1.15E-20 T 10-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like VF_1833 df1a5e90943a01ced92a3670d96981f7 122 SUPERFAMILY SSF52172 1 120 4.7E-37 T 10-10-2018 IPR011006 CheY-like superfamily VF_1833 df1a5e90943a01ced92a3670d96981f7 122 SMART SM00448 1 115 5.5E-35 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1833 df1a5e90943a01ced92a3670d96981f7 122 Pfam PF00072 Response regulator receiver domain 3 115 3.1E-32 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1833 df1a5e90943a01ced92a3670d96981f7 122 Gene3D G3DSA:3.40.50.2300 1 122 2.1E-39 T 10-10-2018 VF_1399 995678aa444b66c3b1c5d4cf2bbbf6d5 243 SUPERFAMILY SSF53448 3 222 9.38E-42 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_1399 995678aa444b66c3b1c5d4cf2bbbf6d5 243 Gene3D G3DSA:3.90.550.10 1 200 2.3E-37 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_1399 995678aa444b66c3b1c5d4cf2bbbf6d5 243 Pfam PF00535 Glycosyl transferase family 2 5 115 4.8E-25 T 10-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VF_0892 816fb8f392a3ae621a299bdd413bf454 547 TIGRFAM TIGR03799 NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase 6 527 1.7E-299 T 10-10-2018 IPR022517 Aspartate 1-decarboxylase, pyridoxal-dependent KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 VF_0892 816fb8f392a3ae621a299bdd413bf454 547 SUPERFAMILY SSF53383 25 528 1.92E-112 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_0892 816fb8f392a3ae621a299bdd413bf454 547 Gene3D G3DSA:3.90.1150.170 49 522 3.4E-112 T 10-10-2018 VF_0892 816fb8f392a3ae621a299bdd413bf454 547 Gene3D G3DSA:3.40.640.10 122 387 3.4E-112 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_0892 816fb8f392a3ae621a299bdd413bf454 547 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 62 442 3.7E-56 T 10-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 VF_A0713 364f3ef8f8edac04f0bed84c7fd752f6 631 Gene3D G3DSA:3.40.930.10 1 148 6.9E-43 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0713 364f3ef8f8edac04f0bed84c7fd752f6 631 Gene3D G3DSA:3.40.50.2300 491 625 1.8E-34 T 10-10-2018 VF_A0713 364f3ef8f8edac04f0bed84c7fd752f6 631 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 6 133 6.8E-38 T 10-10-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 VF_A0713 364f3ef8f8edac04f0bed84c7fd752f6 631 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 528 610 3.3E-28 T 10-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 VF_A0713 364f3ef8f8edac04f0bed84c7fd752f6 631 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 528 618 5.6E-15 T 10-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VF_A0713 364f3ef8f8edac04f0bed84c7fd752f6 631 SUPERFAMILY SSF55804 1 148 7.59E-40 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0713 364f3ef8f8edac04f0bed84c7fd752f6 631 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 147 1.6E-36 T 10-10-2018 IPR002178 PTS EIIA type-2 domain VF_A0713 364f3ef8f8edac04f0bed84c7fd752f6 631 Pfam PF02378 Phosphotransferase system, EIIC 189 446 1.2E-15 T 10-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VF_A0713 364f3ef8f8edac04f0bed84c7fd752f6 631 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 169 498 2.1E-79 T 10-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 VF_A0713 364f3ef8f8edac04f0bed84c7fd752f6 631 SUPERFAMILY SSF52794 526 622 4.36E-29 T 10-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VF_2001 e77acde205c803e9106b59a443b98c8c 145 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 134 2.6E-33 T 10-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 VF_2001 e77acde205c803e9106b59a443b98c8c 145 Gene3D G3DSA:3.30.530.20 3 143 1.6E-38 T 10-10-2018 IPR023393 START-like domain superfamily VF_2001 e77acde205c803e9106b59a443b98c8c 145 SUPERFAMILY SSF55961 1 142 2.33E-34 T 10-10-2018 VF_0562 0b61f1c56784642ebdc7b6a97fce2827 117 SUPERFAMILY SSF69754 2 111 7.72E-23 T 10-10-2018 IPR036567 Ribosome hibernation promotion factor-like VF_0562 0b61f1c56784642ebdc7b6a97fce2827 117 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 99 2.3E-21 T 10-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 VF_0562 0b61f1c56784642ebdc7b6a97fce2827 117 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 93 7.3E-17 T 10-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 VF_0562 0b61f1c56784642ebdc7b6a97fce2827 117 Gene3D G3DSA:3.30.160.100 1 105 1.1E-25 T 10-10-2018 IPR036567 Ribosome hibernation promotion factor-like VF_1239 415225c1f0a69e0324f363af42def793 594 Pfam PF01432 Peptidase family M3 198 576 7.2E-25 T 10-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 VF_1239 415225c1f0a69e0324f363af42def793 594 Gene3D G3DSA:1.20.140.70 17 163 1.1E-13 T 10-10-2018 VF_1239 415225c1f0a69e0324f363af42def793 594 Gene3D G3DSA:1.10.1370.20 217 594 3.0E-107 T 10-10-2018 VF_1239 415225c1f0a69e0324f363af42def793 594 TIGRFAM TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family 5 591 2.8E-196 T 10-10-2018 IPR011977 Peptidase M3B, oligoendopeptidase-related clade 3 VF_1239 415225c1f0a69e0324f363af42def793 594 SUPERFAMILY SSF55486 5 578 2.75E-93 T 10-10-2018 VF_1239 415225c1f0a69e0324f363af42def793 594 Pfam PF08439 Oligopeptidase F 109 172 3.1E-13 T 10-10-2018 IPR013647 Oligopeptidase F, N-terminal domain VF_A0255 28773452866c1b034946a594903aac3e 262 SUPERFAMILY SSF51182 11 184 2.73E-10 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_A0255 28773452866c1b034946a594903aac3e 262 Gene3D G3DSA:1.10.10.60 155 261 3.6E-22 T 10-10-2018 VF_A0255 28773452866c1b034946a594903aac3e 262 SMART SM00342 175 257 2.8E-18 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0255 28773452866c1b034946a594903aac3e 262 Pfam PF02311 AraC-like ligand binding domain 30 143 4.3E-5 T 10-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 VF_A0255 28773452866c1b034946a594903aac3e 262 Pfam PF12833 Helix-turn-helix domain 181 257 3.8E-18 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0255 28773452866c1b034946a594903aac3e 262 SUPERFAMILY SSF46689 212 258 8.06E-9 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_B0038 50bbb2fd0e0c186b3f528ca1a381461a 102 Pfam PF04956 TrbC/VIRB2 family 4 100 2.7E-19 T 10-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 VF_A1060 4c2cb6eed5ba35e252aac6438bfc0d96 434 Pfam PF06863 Protein of unknown function (DUF1254) 58 187 3.4E-29 T 10-10-2018 IPR010679 Domain of unknown function DUF1254 VF_A1060 4c2cb6eed5ba35e252aac6438bfc0d96 434 Gene3D G3DSA:1.10.3360.10 32 213 1.1E-9 T 10-10-2018 IPR023289 VPA0735-like domain superfamily VF_A1060 4c2cb6eed5ba35e252aac6438bfc0d96 434 Gene3D G3DSA:2.60.40.1610 57 209 1.1E-9 T 10-10-2018 IPR037050 Domain of unknown function DUF1254 superfamily VF_A1060 4c2cb6eed5ba35e252aac6438bfc0d96 434 Gene3D G3DSA:2.60.120.1600 314 434 2.3E-40 T 10-10-2018 VF_A1060 4c2cb6eed5ba35e252aac6438bfc0d96 434 SUPERFAMILY SSF160935 8 430 1.22E-102 T 10-10-2018 VF_A1060 4c2cb6eed5ba35e252aac6438bfc0d96 434 Pfam PF06742 Protein of unknown function (DUF1214) 312 417 1.8E-27 T 10-10-2018 IPR010621 Domain of unknown function DUF1214 VF_A0364 fc362b7483d64163cff3fbd4067b0687 130 Pfam PF10000 ACT domain 2 71 1.7E-22 T 10-10-2018 IPR018717 Domain of unknown function DUF2241 VF_A0364 fc362b7483d64163cff3fbd4067b0687 130 Pfam PF13840 ACT domain 72 128 4.5E-12 T 10-10-2018 IPR027795 CASTOR, ACT domain VF_A0364 fc362b7483d64163cff3fbd4067b0687 130 Gene3D G3DSA:3.30.2130.10 1 130 6.6E-44 T 10-10-2018 VF_A0364 fc362b7483d64163cff3fbd4067b0687 130 SUPERFAMILY SSF55021 70 129 4.81E-19 T 10-10-2018 VF_A0364 fc362b7483d64163cff3fbd4067b0687 130 SUPERFAMILY SSF55021 2 67 8.24E-17 T 10-10-2018 VF_A0921 c8500208baae94a15eb05301d4eb1bdc 355 Pfam PF00296 Luciferase-like monooxygenase 1 320 5.2E-43 T 10-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 VF_A0921 c8500208baae94a15eb05301d4eb1bdc 355 PRINTS PR00089 Bacterial luciferase signature 180 195 3.2E-27 T 10-10-2018 IPR002103 Bacterial luciferase/NFP MetaCyc: PWY-7723 VF_A0921 c8500208baae94a15eb05301d4eb1bdc 355 PRINTS PR00089 Bacterial luciferase signature 231 249 3.2E-27 T 10-10-2018 IPR002103 Bacterial luciferase/NFP MetaCyc: PWY-7723 VF_A0921 c8500208baae94a15eb05301d4eb1bdc 355 PRINTS PR00089 Bacterial luciferase signature 196 211 3.2E-27 T 10-10-2018 IPR002103 Bacterial luciferase/NFP MetaCyc: PWY-7723 VF_A0921 c8500208baae94a15eb05301d4eb1bdc 355 PRINTS PR00089 Bacterial luciferase signature 166 177 3.2E-27 T 10-10-2018 IPR002103 Bacterial luciferase/NFP MetaCyc: PWY-7723 VF_A0921 c8500208baae94a15eb05301d4eb1bdc 355 PRINTS PR00089 Bacterial luciferase signature 213 230 3.2E-27 T 10-10-2018 IPR002103 Bacterial luciferase/NFP MetaCyc: PWY-7723 VF_A0921 c8500208baae94a15eb05301d4eb1bdc 355 SUPERFAMILY SSF51679 1 351 9.68E-92 T 10-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 VF_A0921 c8500208baae94a15eb05301d4eb1bdc 355 Gene3D G3DSA:3.20.20.30 1 354 2.7E-114 T 10-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 VF_A0921 c8500208baae94a15eb05301d4eb1bdc 355 ProSitePatterns PS00494 Bacterial luciferase subunits signature. 186 211 - T 10-10-2018 IPR018235 Bacterial luciferase, conserved site GO:0047646|GO:0055114 MetaCyc: PWY-7723 VF_2629 8e56f274c0cf04a92f0021f77b691145 52 ProSitePatterns PS01309 Uncharacterized protein family UPF0057 signature. 8 23 - T 10-10-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 VF_2629 8e56f274c0cf04a92f0021f77b691145 52 Pfam PF01679 Proteolipid membrane potential modulator 4 50 8.4E-21 T 10-10-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 VF_2005 6c5a136fdd3ef7a98cae295dc84086b7 89 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 7 84 9.1E-18 T 10-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative VF_2403 98fd258d322acfe63f08922e4230fb5a 252 SUPERFAMILY SSF55811 2 96 3.57E-22 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VF_2403 98fd258d322acfe63f08922e4230fb5a 252 Gene3D G3DSA:3.90.79.20 1 125 5.9E-30 T 10-10-2018 VF_2403 98fd258d322acfe63f08922e4230fb5a 252 SUPERFAMILY SSF55811 65 243 1.76E-41 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VF_2403 98fd258d322acfe63f08922e4230fb5a 252 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 94 124 2.2E-11 T 10-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 VF_2403 98fd258d322acfe63f08922e4230fb5a 252 Pfam PF00293 NUDIX domain 131 233 1.5E-15 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VF_2403 98fd258d322acfe63f08922e4230fb5a 252 Gene3D G3DSA:3.90.79.10 126 252 1.0E-38 T 10-10-2018 VF_2403 98fd258d322acfe63f08922e4230fb5a 252 ProSitePatterns PS00893 Nudix box signature. 159 180 - T 10-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VF_1643 a08f81f46b1be2fcbe9c94183d3dbe7c 618 Pfam PF01343 Peptidase family S49 140 294 1.6E-28 T 10-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 VF_1643 a08f81f46b1be2fcbe9c94183d3dbe7c 618 Pfam PF01343 Peptidase family S49 393 543 1.3E-50 T 10-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 VF_1643 a08f81f46b1be2fcbe9c94183d3dbe7c 618 Gene3D G3DSA:3.90.226.10 317 542 2.6E-166 T 10-10-2018 VF_1643 a08f81f46b1be2fcbe9c94183d3dbe7c 618 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 16 610 8.9E-202 T 10-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 VF_1643 a08f81f46b1be2fcbe9c94183d3dbe7c 618 SUPERFAMILY SSF52096 325 531 1.24E-42 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VF_1643 a08f81f46b1be2fcbe9c94183d3dbe7c 618 Gene3D G3DSA:3.40.1750.10 188 499 2.6E-166 T 10-10-2018 VF_1643 a08f81f46b1be2fcbe9c94183d3dbe7c 618 PIRSF PIRSF001217 8 618 1.8E-239 T 10-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 VF_1643 a08f81f46b1be2fcbe9c94183d3dbe7c 618 Gene3D G3DSA:3.90.226.10 96 316 2.6E-166 T 10-10-2018 VF_1643 a08f81f46b1be2fcbe9c94183d3dbe7c 618 SUPERFAMILY SSF52096 55 286 1.92E-29 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VF_1643 a08f81f46b1be2fcbe9c94183d3dbe7c 618 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 329 541 3.7E-56 T 10-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 SUPERFAMILY SSF103190 114 205 2.82E-5 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 Gene3D G3DSA:3.30.565.10 416 583 5.5E-51 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 Gene3D G3DSA:3.40.50.2300 731 863 1.2E-41 T 10-10-2018 VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 SMART SM00387 464 580 4.0E-38 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 Gene3D G3DSA:3.30.450.20 31 205 5.7E-25 T 10-10-2018 VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 SMART SM00388 352 417 5.4E-26 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 SMART SM00448 742 860 1.0E-37 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 Pfam PF00072 Response regulator receiver domain 744 860 2.5E-23 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 465 579 3.8E-29 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 SUPERFAMILY SSF52172 743 862 1.85E-37 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 SUPERFAMILY SSF47384 339 418 3.14E-21 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 Pfam PF00512 His Kinase A (phospho-acceptor) domain 352 417 1.8E-20 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 PRINTS PR00344 Bacterial sensor protein C-terminal signature 505 519 2.3E-16 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 PRINTS PR00344 Bacterial sensor protein C-terminal signature 540 558 2.3E-16 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 533 2.3E-16 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 PRINTS PR00344 Bacterial sensor protein C-terminal signature 564 577 2.3E-16 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 Gene3D G3DSA:1.10.287.130 321 415 1.2E-28 T 10-10-2018 VF_A0360 2c81523aa5baa584c4f51d740e9483f0 864 SUPERFAMILY SSF55874 406 577 9.04E-45 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2068 d6cf564f4dcc4f5cc5f1450f3664dd4e 332 Gene3D G3DSA:3.10.350.10 59 101 9.2E-11 T 10-10-2018 IPR036779 LysM domain superfamily VF_2068 d6cf564f4dcc4f5cc5f1450f3664dd4e 332 Pfam PF01551 Peptidase family M23 233 327 3.7E-29 T 10-10-2018 IPR016047 Peptidase M23 VF_2068 d6cf564f4dcc4f5cc5f1450f3664dd4e 332 SUPERFAMILY SSF54106 58 103 2.75E-9 T 10-10-2018 VF_2068 d6cf564f4dcc4f5cc5f1450f3664dd4e 332 SMART SM00257 59 103 1.7E-10 T 10-10-2018 IPR018392 LysM domain VF_2068 d6cf564f4dcc4f5cc5f1450f3664dd4e 332 Gene3D G3DSA:2.70.70.10 199 331 7.1E-35 T 10-10-2018 IPR011055 Duplicated hybrid motif VF_2068 d6cf564f4dcc4f5cc5f1450f3664dd4e 332 SUPERFAMILY SSF51261 170 331 7.85E-46 T 10-10-2018 IPR011055 Duplicated hybrid motif VF_2068 d6cf564f4dcc4f5cc5f1450f3664dd4e 332 Pfam PF01476 LysM domain 60 102 1.2E-10 T 10-10-2018 IPR018392 LysM domain VF_A0631 af09934e7a7715e32b711f85cc4dc261 317 Pfam PF14027 Protein of unknown function (DUF4243) 23 294 3.6E-28 T 10-10-2018 IPR025337 Questin oxidase-like GO:0016491 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 Gene3D G3DSA:3.30.499.10 329 471 6.2E-49 T 10-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 Gene3D G3DSA:3.30.499.20 6 288 1.6E-98 T 10-10-2018 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 SUPERFAMILY SSF53732 5 467 1.44E-164 T 10-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 Pfam PF00330 Aconitase family (aconitate hydratase) 9 459 9.1E-160 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 ProSitePatterns PS00450 Aconitase family signature 1. 341 357 - T 10-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 PRINTS PR00415 Aconitase family signature 197 210 3.2E-50 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 PRINTS PR00415 Aconitase family signature 211 224 3.2E-50 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 PRINTS PR00415 Aconitase family signature 345 356 3.2E-50 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 PRINTS PR00415 Aconitase family signature 121 134 3.2E-50 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 PRINTS PR00415 Aconitase family signature 135 150 3.2E-50 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 PRINTS PR00415 Aconitase family signature 84 97 3.2E-50 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 PRINTS PR00415 Aconitase family signature 110 118 3.2E-50 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 PRINTS PR00415 Aconitase family signature 288 302 3.2E-50 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 PRINTS PR00415 Aconitase family signature 401 414 3.2E-50 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 4 467 1.8E-261 T 10-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 ProSitePatterns PS01244 Aconitase family signature 2. 401 414 - T 10-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 VF_0293 4ad5b3f2632f466811b92350b2e09f27 471 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 3 468 60.056 T 10-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 VF_0595 baf959defbb3aa2df32a0c66f76acddd 452 Pfam PF11892 Domain of unknown function (DUF3412) 330 450 1.0E-58 T 10-10-2018 IPR021826 Domain of unknown function DUF3412 KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 VF_0595 baf959defbb3aa2df32a0c66f76acddd 452 Gene3D G3DSA:3.40.50.450 121 449 3.1E-121 T 10-10-2018 VF_0595 baf959defbb3aa2df32a0c66f76acddd 452 SUPERFAMILY SSF102405 118 323 3.21E-40 T 10-10-2018 VF_0595 baf959defbb3aa2df32a0c66f76acddd 452 Pfam PF03641 Possible lysine decarboxylase 187 323 1.4E-33 T 10-10-2018 IPR031100 LOG family VF_0595 baf959defbb3aa2df32a0c66f76acddd 452 Pfam PF14793 Domain of unknown function (DUF4478) 4 110 1.6E-48 T 10-10-2018 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 VF_0595 baf959defbb3aa2df32a0c66f76acddd 452 Gene3D G3DSA:3.30.1850.10 1 120 3.5E-55 T 10-10-2018 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 VF_1017 d7be6641b2a2c70de13b90e794fff0dd 245 Gene3D G3DSA:3.20.20.70 1 245 2.1E-91 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1017 d7be6641b2a2c70de13b90e794fff0dd 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 2 238 4.2E-78 T 10-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 VF_1017 d7be6641b2a2c70de13b90e794fff0dd 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 241 34.746 T 10-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 VF_1017 d7be6641b2a2c70de13b90e794fff0dd 245 SUPERFAMILY SSF51366 1 243 8.07E-66 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VF_1017 d7be6641b2a2c70de13b90e794fff0dd 245 Pfam PF00977 Histidine biosynthesis protein 1 234 1.3E-76 T 10-10-2018 IPR006062 Histidine biosynthesis GO:0000105 VF_2062 76d33b45c6b77364237ddcc914a29818 82 Pfam PF04143 Sulphur transport 25 72 4.0E-9 T 10-10-2018 IPR007272 Sulphur transport domain VF_1136 cce5714e0988139ed30e333088474ed4 129 Pfam PF07233 Protein of unknown function (DUF1425) 35 126 1.3E-31 T 10-10-2018 IPR010824 Protein of unknown function DUF1425 VF_1136 cce5714e0988139ed30e333088474ed4 129 Gene3D G3DSA:2.60.40.3230 19 128 2.3E-34 T 10-10-2018 IPR038483 YcfL-like superfamily VF_1555 363f71018e18f3ffd05322f335032aa0 215 SUPERFAMILY SSF48452 76 189 1.3E-10 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1555 363f71018e18f3ffd05322f335032aa0 215 Gene3D G3DSA:1.25.40.10 118 210 7.3E-25 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0729 1931ebd2335acb125718703a764a1802 392 Gene3D G3DSA:1.20.1250.20 6 198 3.3E-8 T 10-10-2018 VF_A0729 1931ebd2335acb125718703a764a1802 392 Gene3D G3DSA:1.20.1250.20 199 386 2.0E-14 T 10-10-2018 VF_A0729 1931ebd2335acb125718703a764a1802 392 Pfam PF07690 Major Facilitator Superfamily 211 383 2.8E-9 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_A0729 1931ebd2335acb125718703a764a1802 392 SUPERFAMILY SSF103473 12 377 1.03E-36 T 10-10-2018 IPR036259 MFS transporter superfamily VF_1870 5ef16e76aae7d986330c5cc305c2e6ef 373 PRINTS PR01010 Flagellar P-ring protein signature 64 79 8.3E-87 T 10-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VF_1870 5ef16e76aae7d986330c5cc305c2e6ef 373 PRINTS PR01010 Flagellar P-ring protein signature 32 47 8.3E-87 T 10-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VF_1870 5ef16e76aae7d986330c5cc305c2e6ef 373 PRINTS PR01010 Flagellar P-ring protein signature 90 109 8.3E-87 T 10-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VF_1870 5ef16e76aae7d986330c5cc305c2e6ef 373 PRINTS PR01010 Flagellar P-ring protein signature 170 188 8.3E-87 T 10-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VF_1870 5ef16e76aae7d986330c5cc305c2e6ef 373 PRINTS PR01010 Flagellar P-ring protein signature 112 129 8.3E-87 T 10-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VF_1870 5ef16e76aae7d986330c5cc305c2e6ef 373 PRINTS PR01010 Flagellar P-ring protein signature 196 214 8.3E-87 T 10-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VF_1870 5ef16e76aae7d986330c5cc305c2e6ef 373 PRINTS PR01010 Flagellar P-ring protein signature 47 62 8.3E-87 T 10-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VF_1870 5ef16e76aae7d986330c5cc305c2e6ef 373 PRINTS PR01010 Flagellar P-ring protein signature 129 147 8.3E-87 T 10-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VF_1870 5ef16e76aae7d986330c5cc305c2e6ef 373 PRINTS PR01010 Flagellar P-ring protein signature 260 272 8.3E-87 T 10-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VF_1870 5ef16e76aae7d986330c5cc305c2e6ef 373 Hamap MF_00416 Flagellar P-ring protein [flgI]. 12 373 39.727 T 10-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VF_1870 5ef16e76aae7d986330c5cc305c2e6ef 373 Pfam PF02119 Flagellar P-ring protein 32 372 4.7E-137 T 10-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VF_A0013 8275f8e64944beb58c0cdabdb3d3ae9a 392 SUPERFAMILY SSF81296 24 215 1.27E-47 T 10-10-2018 IPR014756 Immunoglobulin E-set VF_A0013 8275f8e64944beb58c0cdabdb3d3ae9a 392 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 24 212 1.1E-36 T 10-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal VF_A0013 8275f8e64944beb58c0cdabdb3d3ae9a 392 Gene3D G3DSA:2.70.50.50 24 217 3.3E-62 T 10-10-2018 VF_A0013 8275f8e64944beb58c0cdabdb3d3ae9a 392 Gene3D G3DSA:2.10.10.20 349 392 1.1E-17 T 10-10-2018 VF_A0013 8275f8e64944beb58c0cdabdb3d3ae9a 392 SUPERFAMILY SSF51055 346 391 2.22E-12 T 10-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_A0013 8275f8e64944beb58c0cdabdb3d3ae9a 392 SMART SM00495 349 392 2.1E-9 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_A0013 8275f8e64944beb58c0cdabdb3d3ae9a 392 Gene3D G3DSA:3.30.70.2150 239 333 7.2E-6 T 10-10-2018 VF_1525 6982bee6a55492f5fd248645ad33e8ab 1010 Pfam PF01565 FAD binding domain 52 192 4.7E-33 T 10-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 VF_1525 6982bee6a55492f5fd248645ad33e8ab 1010 Gene3D G3DSA:3.30.70.2740 412 493 1.2E-5 T 10-10-2018 VF_1525 6982bee6a55492f5fd248645ad33e8ab 1010 Pfam PF13183 4Fe-4S dicluster domain 568 679 8.8E-12 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_1525 6982bee6a55492f5fd248645ad33e8ab 1010 Pfam PF02913 FAD linked oxidases, C-terminal domain 274 532 3.1E-61 T 10-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 VF_1525 6982bee6a55492f5fd248645ad33e8ab 1010 SUPERFAMILY SSF46548 553 683 3.14E-7 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_1525 6982bee6a55492f5fd248645ad33e8ab 1010 SUPERFAMILY SSF56176 20 275 3.32E-47 T 10-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VF_1525 6982bee6a55492f5fd248645ad33e8ab 1010 Gene3D G3DSA:3.30.465.40 17 206 3.7E-43 T 10-10-2018 VF_1525 6982bee6a55492f5fd248645ad33e8ab 1010 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 665 676 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_1525 6982bee6a55492f5fd248645ad33e8ab 1010 SUPERFAMILY SSF55103 250 536 3.6E-53 T 10-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 VF_1986 1bb31f7fe30641eac410f9265140e574 329 Gene3D G3DSA:3.40.190.10 45 316 1.3E-101 T 10-10-2018 VF_1986 1bb31f7fe30641eac410f9265140e574 329 Gene3D G3DSA:3.40.190.10 130 272 1.3E-101 T 10-10-2018 VF_1986 1bb31f7fe30641eac410f9265140e574 329 SUPERFAMILY SSF53850 43 320 9.06E-67 T 10-10-2018 VF_1986 1bb31f7fe30641eac410f9265140e574 329 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 40 313 7.0E-75 T 10-10-2018 IPR011862 Phosphate binding protein GO:0042301 VF_1986 1bb31f7fe30641eac410f9265140e574 329 Pfam PF12849 PBP superfamily domain 45 301 4.6E-32 T 10-10-2018 IPR024370 PBP domain VF_0635 ea9ded590a7707b3218cf85ab8cca596 77 SUPERFAMILY SSF161187 3 70 1.02E-26 T 10-10-2018 VF_0635 ea9ded590a7707b3218cf85ab8cca596 77 ProDom PD060428 YFGJ CYTOPLASMIC VP0614 ECS3372 VC0765 YPO2873 Y1359 STY2763A VV0773 6 68 2.0E-31 T 10-10-2018 IPR010807 Protein of unknown function DUF1407 VF_0635 ea9ded590a7707b3218cf85ab8cca596 77 Gene3D G3DSA:2.10.290.10 2 72 3.6E-25 T 10-10-2018 IPR029037 YfgJ-like VF_0635 ea9ded590a7707b3218cf85ab8cca596 77 Pfam PF07191 zinc-ribbons 5 69 2.9E-26 T 10-10-2018 IPR010807 Protein of unknown function DUF1407 VF_1330 644f6d2e184325cef4db5db42cd67573 443 SUPERFAMILY SSF88713 43 389 5.56E-29 T 10-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 VF_1330 644f6d2e184325cef4db5db42cd67573 443 Pfam PF01522 Polysaccharide deacetylase 87 194 7.0E-8 T 10-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 VF_1330 644f6d2e184325cef4db5db42cd67573 443 Pfam PF02839 Carbohydrate binding domain 412 436 8.8E-7 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1330 644f6d2e184325cef4db5db42cd67573 443 SUPERFAMILY SSF51055 391 442 2.09E-13 T 10-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1330 644f6d2e184325cef4db5db42cd67573 443 SMART SM00495 395 439 1.2E-6 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1330 644f6d2e184325cef4db5db42cd67573 443 Gene3D G3DSA:2.10.10.20 389 443 6.4E-13 T 10-10-2018 VF_0717 17c35223f21976b053a0a6d70bcdb892 196 SUPERFAMILY SSF52317 3 193 8.29E-42 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_0717 17c35223f21976b053a0a6d70bcdb892 196 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 4 182 1.0E-62 T 10-10-2018 IPR006287 Protein/nucleic acid deglycase DJ-1 Reactome: R-HSA-3899300 VF_0717 17c35223f21976b053a0a6d70bcdb892 196 Pfam PF01965 DJ-1/PfpI family 3 170 5.8E-37 T 10-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 VF_0717 17c35223f21976b053a0a6d70bcdb892 196 Gene3D G3DSA:3.40.50.880 1 194 8.5E-48 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_0816 25e93b4889f224fb9c7eab43ef01d4a0 548 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 180 1.0E-36 T 10-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0816 25e93b4889f224fb9c7eab43ef01d4a0 548 SUPERFAMILY SSF55957 433 544 5.06E-18 T 10-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0816 25e93b4889f224fb9c7eab43ef01d4a0 548 SUPERFAMILY SSF53738 209 317 2.0E-7 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0816 25e93b4889f224fb9c7eab43ef01d4a0 548 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 210 317 2.6E-16 T 10-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0816 25e93b4889f224fb9c7eab43ef01d4a0 548 Gene3D G3DSA:3.40.120.10 12 218 5.6E-74 T 10-10-2018 VF_0816 25e93b4889f224fb9c7eab43ef01d4a0 548 Gene3D G3DSA:3.30.310.50 443 546 2.4E-34 T 10-10-2018 VF_0816 25e93b4889f224fb9c7eab43ef01d4a0 548 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 320 437 4.4E-28 T 10-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0816 25e93b4889f224fb9c7eab43ef01d4a0 548 SUPERFAMILY SSF53738 27 235 1.6E-50 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0816 25e93b4889f224fb9c7eab43ef01d4a0 548 Gene3D G3DSA:3.40.120.10 221 318 8.7E-44 T 10-10-2018 VF_0816 25e93b4889f224fb9c7eab43ef01d4a0 548 Gene3D G3DSA:3.40.120.10 319 442 9.0E-34 T 10-10-2018 VF_0816 25e93b4889f224fb9c7eab43ef01d4a0 548 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 490 537 3.1E-7 T 10-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0816 25e93b4889f224fb9c7eab43ef01d4a0 548 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 140 149 - T 10-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0816 25e93b4889f224fb9c7eab43ef01d4a0 548 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 1 544 0.0 T 10-10-2018 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6317|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-6981|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7900|MetaCyc: PWY-7902 VF_0816 25e93b4889f224fb9c7eab43ef01d4a0 548 SUPERFAMILY SSF53738 305 446 3.61E-30 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_1178 ba88d379defec082a26d818354a9d31e 193 Gene3D G3DSA:3.90.79.10 11 189 2.3E-46 T 10-10-2018 VF_1178 ba88d379defec082a26d818354a9d31e 193 SUPERFAMILY SSF55811 32 186 1.11E-29 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VF_1178 ba88d379defec082a26d818354a9d31e 193 Pfam PF00293 NUDIX domain 35 105 1.9E-12 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VF_1403 06dd5e790bc0b1a6f263826edfb06dec 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 221 5.9E-10 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_1403 06dd5e790bc0b1a6f263826edfb06dec 232 SUPERFAMILY SSF161098 14 222 3.66E-33 T 10-10-2018 IPR035906 MetI-like superfamily VF_1403 06dd5e790bc0b1a6f263826edfb06dec 232 Gene3D G3DSA:1.10.3720.10 2 229 2.4E-31 T 10-10-2018 IPR035906 MetI-like superfamily VF_0601 2fcca2199ed140f9bd903efe64801df7 149 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 145 4.4E-48 T 10-10-2018 IPR003791 Protein of unknown function UPF0178 VF_0601 2fcca2199ed140f9bd903efe64801df7 149 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 31.833 T 10-10-2018 IPR003791 Protein of unknown function UPF0178 VF_A0902 940d9239c94e0074b01e8f405a46c7da 320 Pfam PF01882 Protein of unknown function DUF58 59 144 1.5E-16 T 10-10-2018 IPR002881 Domain of unknown function DUF58 VF_2410 38f42bdd1337a4ba7263acbd32efc51a 314 Pfam PF07012 Curlin associated repeat 80 114 2.4E-5 T 10-10-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 VF_0576 1da0972480c8ae5f803ed7fa9706541d 343 Gene3D G3DSA:3.30.60.70 131 171 5.4E-21 T 10-10-2018 IPR038361 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain superfamily KEGG: 00300+2.3.1.117 VF_0576 1da0972480c8ae5f803ed7fa9706541d 343 Gene3D G3DSA:3.30.70.2010 1 130 3.8E-39 T 10-10-2018 VF_0576 1da0972480c8ae5f803ed7fa9706541d 343 Pfam PF14789 Tetrahydrodipicolinate N-succinyltransferase middle 131 171 3.4E-16 T 10-10-2018 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117 VF_0576 1da0972480c8ae5f803ed7fa9706541d 343 SUPERFAMILY SSF51161 90 323 6.24E-36 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_0576 1da0972480c8ae5f803ed7fa9706541d 343 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 253 285 8.9E-13 T 10-10-2018 IPR001451 Hexapeptide repeat VF_0576 1da0972480c8ae5f803ed7fa9706541d 343 Hamap MF_02122 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 2 340 45.789 T 10-10-2018 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family GO:0008666 KEGG: 00300+2.3.1.117 VF_0576 1da0972480c8ae5f803ed7fa9706541d 343 Gene3D G3DSA:2.160.10.10 172 343 1.0E-70 T 10-10-2018 VF_0576 1da0972480c8ae5f803ed7fa9706541d 343 TIGRFAM TIGR03536 DapD_gpp: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4 343 3.4E-182 T 10-10-2018 IPR019876 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, gammaproteobacteria KEGG: 00300+2.3.1.117 VF_2400 eda12ef7ffc80658c2ed9b2296126747 304 Gene3D G3DSA:3.40.50.720 30 296 7.4E-91 T 10-10-2018 VF_2400 eda12ef7ffc80658c2ed9b2296126747 304 SUPERFAMILY SSF51735 90 270 1.93E-41 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_2400 eda12ef7ffc80658c2ed9b2296126747 304 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 97 269 8.1E-41 T 10-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VF_2400 eda12ef7ffc80658c2ed9b2296126747 304 SUPERFAMILY SSF52283 10 117 8.5E-11 T 10-10-2018 VF_2400 eda12ef7ffc80658c2ed9b2296126747 304 Gene3D G3DSA:3.40.50.720 88 273 7.4E-91 T 10-10-2018 VF_1837 ba3a2034a172f952ad97ed667bef2476 697 Gene3D G3DSA:1.10.490.80 598 695 5.0E-15 T 10-10-2018 VF_1837 ba3a2034a172f952ad97ed667bef2476 697 Gene3D G3DSA:1.10.8.540 507 594 5.9E-24 T 10-10-2018 VF_1837 ba3a2034a172f952ad97ed667bef2476 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 161 179 9.1E-57 T 10-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VF_1837 ba3a2034a172f952ad97ed667bef2476 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 75 94 9.1E-57 T 10-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VF_1837 ba3a2034a172f952ad97ed667bef2476 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 242 256 9.1E-57 T 10-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VF_1837 ba3a2034a172f952ad97ed667bef2476 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 142 158 9.1E-57 T 10-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VF_1837 ba3a2034a172f952ad97ed667bef2476 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 38 51 9.1E-57 T 10-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VF_1837 ba3a2034a172f952ad97ed667bef2476 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 191 208 9.1E-57 T 10-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VF_1837 ba3a2034a172f952ad97ed667bef2476 697 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 147 170 - T 10-10-2018 IPR025505 FHIPEP conserved site VF_1837 ba3a2034a172f952ad97ed667bef2476 697 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 22 694 2.2E-268 T 10-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 VF_1837 ba3a2034a172f952ad97ed667bef2476 697 PIRSF PIRSF005419 13 697 2.6E-253 T 10-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VF_1837 ba3a2034a172f952ad97ed667bef2476 697 Pfam PF00771 FHIPEP family 32 687 7.1E-270 T 10-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VF_1837 ba3a2034a172f952ad97ed667bef2476 697 Gene3D G3DSA:3.40.30.60 363 506 2.4E-53 T 10-10-2018 VF_0442 23b8bf9655f027952675a7621273994b 387 Gene3D G3DSA:3.40.50.1260 10 379 1.8E-149 T 10-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 Gene3D G3DSA:3.40.50.1260 165 373 1.8E-149 T 10-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 Pfam PF00162 Phosphoglycerate kinase 6 373 1.2E-137 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 PIRSF PIRSF000724 1 387 6.5E-133 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 10-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 SUPERFAMILY SSF53748 3 383 1.18E-143 T 10-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 6 383 38.143 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 9.7E-82 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 9.7E-82 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 9.7E-82 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 9.7E-82 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 9.7E-82 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 9.7E-82 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 9.7E-82 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 9.7E-82 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0442 23b8bf9655f027952675a7621273994b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 9.7E-82 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_1769 afd2fd83ecf23a6c8271c6e5a8324549 485 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 7 452 1.6E-156 T 10-10-2018 IPR003846 Uncharacterised protein family UPF0061 VF_1769 afd2fd83ecf23a6c8271c6e5a8324549 485 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 5 471 43.541 T 10-10-2018 IPR003846 Uncharacterised protein family UPF0061 VF_1245 616e412bb32fe21003565d5c0e75168b 516 Gene3D G3DSA:3.30.450.20 197 329 3.5E-9 T 10-10-2018 VF_1245 616e412bb32fe21003565d5c0e75168b 516 Pfam PF08269 Cache domain 35 316 2.6E-30 T 10-10-2018 IPR004010 Double Cache domain 2 VF_1245 616e412bb32fe21003565d5c0e75168b 516 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 357 511 3.6E-36 T 10-10-2018 IPR000160 GGDEF domain VF_1245 616e412bb32fe21003565d5c0e75168b 516 Pfam PF00990 Diguanylate cyclase, GGDEF domain 357 509 2.4E-32 T 10-10-2018 IPR000160 GGDEF domain VF_1245 616e412bb32fe21003565d5c0e75168b 516 Gene3D G3DSA:3.30.450.20 64 196 1.2E-13 T 10-10-2018 VF_1245 616e412bb32fe21003565d5c0e75168b 516 Gene3D G3DSA:3.30.70.270 344 515 1.2E-40 T 10-10-2018 VF_1245 616e412bb32fe21003565d5c0e75168b 516 SMART SM00267 346 513 1.3E-39 T 10-10-2018 IPR000160 GGDEF domain VF_1245 616e412bb32fe21003565d5c0e75168b 516 SUPERFAMILY SSF55073 361 514 3.37E-35 T 10-10-2018 IPR029787 Nucleotide cyclase VF_1658 46ee5d05a53a3c4cf1dd4b4b6962879e 230 SUPERFAMILY SSF51735 1 230 6.67E-80 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1658 46ee5d05a53a3c4cf1dd4b4b6962879e 230 Pfam PF00106 short chain dehydrogenase 2 191 2.0E-34 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1658 46ee5d05a53a3c4cf1dd4b4b6962879e 230 Gene3D G3DSA:3.40.50.720 1 230 1.2E-63 T 10-10-2018 VF_1658 46ee5d05a53a3c4cf1dd4b4b6962879e 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 4.8E-17 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1658 46ee5d05a53a3c4cf1dd4b4b6962879e 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 4.8E-17 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1658 46ee5d05a53a3c4cf1dd4b4b6962879e 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 4.8E-17 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1658 46ee5d05a53a3c4cf1dd4b4b6962879e 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 4.8E-17 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1658 46ee5d05a53a3c4cf1dd4b4b6962879e 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 4.8E-17 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1658 46ee5d05a53a3c4cf1dd4b4b6962879e 230 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 3.0E-5 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1658 46ee5d05a53a3c4cf1dd4b4b6962879e 230 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 3.0E-5 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1537 474f78850415b47b02c62f8c301373c8 341 Gene3D G3DSA:1.25.40.10 18 184 1.2E-18 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1537 474f78850415b47b02c62f8c301373c8 341 SMART SM00671 168 200 22.0 T 10-10-2018 IPR006597 Sel1-like repeat VF_1537 474f78850415b47b02c62f8c301373c8 341 SMART SM00671 237 270 160.0 T 10-10-2018 IPR006597 Sel1-like repeat VF_1537 474f78850415b47b02c62f8c301373c8 341 SMART SM00671 201 236 0.0057 T 10-10-2018 IPR006597 Sel1-like repeat VF_1537 474f78850415b47b02c62f8c301373c8 341 SMART SM00671 132 167 0.032 T 10-10-2018 IPR006597 Sel1-like repeat VF_1537 474f78850415b47b02c62f8c301373c8 341 SMART SM00671 64 94 12.0 T 10-10-2018 IPR006597 Sel1-like repeat VF_1537 474f78850415b47b02c62f8c301373c8 341 SUPERFAMILY SSF81901 59 274 8.2E-23 T 10-10-2018 VF_1537 474f78850415b47b02c62f8c301373c8 341 Pfam PF08238 Sel1 repeat 138 154 54.0 T 10-10-2018 IPR006597 Sel1-like repeat VF_1537 474f78850415b47b02c62f8c301373c8 341 Pfam PF08238 Sel1 repeat 208 233 0.0048 T 10-10-2018 IPR006597 Sel1-like repeat VF_1537 474f78850415b47b02c62f8c301373c8 341 Pfam PF08238 Sel1 repeat 75 94 0.031 T 10-10-2018 IPR006597 Sel1-like repeat VF_1537 474f78850415b47b02c62f8c301373c8 341 Pfam PF08238 Sel1 repeat 169 200 1.4 T 10-10-2018 IPR006597 Sel1-like repeat VF_1537 474f78850415b47b02c62f8c301373c8 341 Gene3D G3DSA:1.25.40.10 185 306 2.8E-13 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1988 23768a09829e0b9439584688e7effd5e 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 7.5E-27 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_1988 23768a09829e0b9439584688e7effd5e 230 Gene3D G3DSA:1.10.10.10 128 228 3.0E-39 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1988 23768a09829e0b9439584688e7effd5e 230 SMART SM00862 150 225 5.1E-26 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_1988 23768a09829e0b9439584688e7effd5e 230 Pfam PF00072 Response regulator receiver domain 5 116 9.4E-29 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1988 23768a09829e0b9439584688e7effd5e 230 SUPERFAMILY SSF52172 3 184 1.39E-43 T 10-10-2018 IPR011006 CheY-like superfamily VF_1988 23768a09829e0b9439584688e7effd5e 230 Gene3D G3DSA:3.40.50.2300 1 127 2.7E-38 T 10-10-2018 VF_1988 23768a09829e0b9439584688e7effd5e 230 SMART SM00448 3 116 9.9E-45 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1988 23768a09829e0b9439584688e7effd5e 230 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 1.4E-112 T 10-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 VF_1533 6e190025c3514e84946517ac0781bb1f 388 SUPERFAMILY SSF161098 182 369 6.54E-24 T 10-10-2018 IPR035906 MetI-like superfamily VF_1533 6e190025c3514e84946517ac0781bb1f 388 Gene3D G3DSA:1.10.3720.10 178 384 1.1E-29 T 10-10-2018 IPR035906 MetI-like superfamily VF_1533 6e190025c3514e84946517ac0781bb1f 388 SUPERFAMILY SSF161098 78 191 1.26E-10 T 10-10-2018 IPR035906 MetI-like superfamily VF_1533 6e190025c3514e84946517ac0781bb1f 388 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 383 3.4E-11 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_1533 6e190025c3514e84946517ac0781bb1f 388 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 79 142 1.1E-16 T 10-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VF_0585 baaa6e8056840889496b8e362f037c60 446 Gene3D G3DSA:3.40.630.30 297 445 8.0E-37 T 10-10-2018 VF_0585 baaa6e8056840889496b8e362f037c60 446 PIRSF PIRSF000423 1 445 2.5E-204 T 10-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 VF_0585 baaa6e8056840889496b8e362f037c60 446 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 445 223.549 T 10-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 VF_0585 baaa6e8056840889496b8e362f037c60 446 Pfam PF00696 Amino acid kinase family 25 270 2.1E-27 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VF_0585 baaa6e8056840889496b8e362f037c60 446 SUPERFAMILY SSF53633 5 294 6.56E-66 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_0585 baaa6e8056840889496b8e362f037c60 446 Gene3D G3DSA:3.40.1160.10 7 296 4.2E-84 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_0585 baaa6e8056840889496b8e362f037c60 446 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 8 444 3.1E-201 T 10-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 VF_0585 baaa6e8056840889496b8e362f037c60 446 Pfam PF00583 Acetyltransferase (GNAT) family 334 416 3.2E-4 T 10-10-2018 IPR000182 GNAT domain VF_0585 baaa6e8056840889496b8e362f037c60 446 SUPERFAMILY SSF55729 300 424 9.17E-18 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A0264 7c63adfed2ef386104d89763caabc5da 403 SUPERFAMILY SSF141673 29 156 1.57E-34 T 10-10-2018 VF_A0264 7c63adfed2ef386104d89763caabc5da 403 Gene3D G3DSA:3.10.20.30 295 403 1.8E-21 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_A0264 7c63adfed2ef386104d89763caabc5da 403 Pfam PF03476 MOSC N-terminal beta barrel domain 28 141 1.6E-28 T 10-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 VF_A0264 7c63adfed2ef386104d89763caabc5da 403 SUPERFAMILY SSF54292 315 402 9.57E-23 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VF_A0264 7c63adfed2ef386104d89763caabc5da 403 SUPERFAMILY SSF50800 23 287 2.46E-18 T 10-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily VF_A0264 7c63adfed2ef386104d89763caabc5da 403 Pfam PF03473 MOSC domain 161 285 5.9E-31 T 10-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 VF_A0264 7c63adfed2ef386104d89763caabc5da 403 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 353 361 - T 10-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 VF_A0264 7c63adfed2ef386104d89763caabc5da 403 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 331 396 2.4E-11 T 10-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VF_0269 359148c3f1fed5188eaa552269643e47 234 SUPERFAMILY SSF52540 1 231 6.95E-65 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0269 359148c3f1fed5188eaa552269643e47 234 SMART SM00382 24 213 1.7E-18 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0269 359148c3f1fed5188eaa552269643e47 234 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0269 359148c3f1fed5188eaa552269643e47 234 Gene3D G3DSA:3.40.50.300 1 232 5.3E-63 T 10-10-2018 VF_0269 359148c3f1fed5188eaa552269643e47 234 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 3 211 4.5E-96 T 10-10-2018 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0016021|GO:0042626|GO:0071934 VF_0269 359148c3f1fed5188eaa552269643e47 234 Pfam PF00005 ABC transporter 18 157 3.0E-36 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0971 a977aa57eaf062fb41e6404c7ac57537 452 Pfam PF01926 50S ribosome-binding GTPase 227 345 2.7E-17 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0971 a977aa57eaf062fb41e6404c7ac57537 452 Gene3D G3DSA:3.40.50.300 226 393 2.5E-35 T 10-10-2018 VF_0971 a977aa57eaf062fb41e6404c7ac57537 452 Pfam PF13167 GTP-binding GTPase N-terminal 29 143 1.0E-21 T 10-10-2018 IPR025121 GTPase HflX, N-terminal VF_0971 a977aa57eaf062fb41e6404c7ac57537 452 Pfam PF16360 GTP-binding GTPase Middle Region 146 221 6.9E-19 T 10-10-2018 IPR032305 GTP-binding protein, middle domain VF_0971 a977aa57eaf062fb41e6404c7ac57537 452 Gene3D G3DSA:3.40.50.11060 22 172 3.1E-34 T 10-10-2018 VF_0971 a977aa57eaf062fb41e6404c7ac57537 452 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 107 383 7.2E-97 T 10-10-2018 IPR016496 GTPase HflX GO:0005525 VF_0971 a977aa57eaf062fb41e6404c7ac57537 452 Hamap MF_00900 GTPase HflX [hflX]. 31 415 42.592 T 10-10-2018 IPR016496 GTPase HflX GO:0005525 VF_0971 a977aa57eaf062fb41e6404c7ac57537 452 SUPERFAMILY SSF52540 225 397 4.15E-35 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0971 a977aa57eaf062fb41e6404c7ac57537 452 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 247 7.3E-6 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0971 a977aa57eaf062fb41e6404c7ac57537 452 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 294 312 7.3E-6 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0971 a977aa57eaf062fb41e6404c7ac57537 452 PIRSF PIRSF006809 2 447 2.7E-150 T 10-10-2018 IPR016496 GTPase HflX GO:0005525 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 170 2.2E-56 T 10-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 Gene3D G3DSA:1.20.1060.10 546 661 2.2E-43 T 10-10-2018 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 SMART SM00474 333 520 6.7E-43 T 10-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 SUPERFAMILY SSF53098 336 520 1.93E-56 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 Pfam PF00476 DNA polymerase family A 555 930 7.0E-156 T 10-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 Gene3D G3DSA:3.40.50.1010 10 284 1.8E-97 T 10-10-2018 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 Gene3D G3DSA:1.10.150.20 712 855 1.4E-113 T 10-10-2018 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 SUPERFAMILY SSF47807 171 290 2.09E-30 T 10-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 ProSitePatterns PS00447 DNA polymerase family A signature. 757 776 - T 10-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 172 271 2.0E-28 T 10-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 TIGRFAM TIGR00593 pola: DNA polymerase I 10 932 2.4E-290 T 10-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 SMART SM00475 7 268 8.6E-126 T 10-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 Gene3D G3DSA:1.10.150.20 174 253 1.8E-97 T 10-10-2018 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 SUPERFAMILY SSF56672 525 932 9.45E-159 T 10-10-2018 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 681 696 1.2E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 733 746 1.2E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 848 864 1.2E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 703 726 1.2E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 879 892 1.2E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 658 680 1.2E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 816 827 1.2E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 757 782 1.2E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 794 805 1.2E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 Pfam PF01612 3'-5' exonuclease 333 520 5.5E-40 T 10-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 SMART SM00482 689 896 8.4E-113 T 10-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 SMART SM00279 173 208 1.0E-13 T 10-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 Gene3D G3DSA:3.30.70.370 667 928 1.4E-113 T 10-10-2018 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 Gene3D G3DSA:3.30.420.10 330 545 2.7E-69 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_0074 aaecb7dc479a408243ea1375a289a5aa 932 SUPERFAMILY SSF88723 7 170 2.33E-59 T 10-10-2018 IPR029060 PIN-like domain superfamily VF_0079 5fcc7e1c3f3400c825ffe5cf7e6d7d3d 163 Pfam PF10675 Protein of unknown function (DUF2489) 15 147 8.8E-44 T 10-10-2018 IPR019617 Domain of unknown function DUF2489 VF_1835 b14b9aaf7dc1c4149aad6bb52c6c4d15 296 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 22 262 2.8E-21 T 10-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 VF_1835 b14b9aaf7dc1c4149aad6bb52c6c4d15 296 PIRSF PIRSF003092 7 288 2.0E-85 T 10-10-2018 IPR025501 ATP binding protein MinD VF_1835 b14b9aaf7dc1c4149aad6bb52c6c4d15 296 Gene3D G3DSA:3.40.50.300 22 264 2.8E-59 T 10-10-2018 VF_1835 b14b9aaf7dc1c4149aad6bb52c6c4d15 296 SUPERFAMILY SSF52540 22 293 2.66E-55 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 SMART SM00889 477 595 7.7E-62 T 10-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 Gene3D G3DSA:3.30.70.870 409 480 7.0E-25 T 10-10-2018 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 Hamap MF_00054_B Elongation factor G [fusA]. 3 688 101.793 T 10-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 689 3.1E-289 T 10-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 Pfam PF03764 Elongation factor G, domain IV 476 594 6.0E-44 T 10-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 PRINTS PR00315 GTP-binding elongation factor signature 9 22 1.2E-13 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 PRINTS PR00315 GTP-binding elongation factor signature 75 85 1.2E-13 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 PRINTS PR00315 GTP-binding elongation factor signature 55 63 1.2E-13 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 PRINTS PR00315 GTP-binding elongation factor signature 127 136 1.2E-13 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 SUPERFAMILY SSF54980 401 478 1.83E-20 T 10-10-2018 IPR035647 EF-G domain III/V-like VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 Pfam PF00679 Elongation factor G C-terminus 597 683 2.7E-28 T 10-10-2018 IPR000640 Elongation factor EFG, domain V-like VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 Gene3D G3DSA:2.40.30.10 291 408 1.5E-41 T 10-10-2018 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 SMART SM00838 597 684 3.0E-47 T 10-10-2018 IPR000640 Elongation factor EFG, domain V-like VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 Pfam PF03144 Elongation factor Tu domain 2 321 388 1.4E-16 T 10-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 48 63 - T 10-10-2018 IPR031157 Tr-type G domain, conserved site VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 Gene3D G3DSA:3.40.50.300 1 290 1.4E-101 T 10-10-2018 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 SUPERFAMILY SSF52540 3 277 1.03E-98 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 Pfam PF00009 Elongation factor Tu GTP binding domain 6 277 1.1E-59 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 Gene3D G3DSA:3.30.230.10 481 684 4.5E-83 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 175 7.8E-25 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 Pfam PF14492 Elongation Factor G, domain II 401 475 2.5E-28 T 10-10-2018 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 SUPERFAMILY SSF54211 476 595 8.85E-40 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 Gene3D G3DSA:3.30.70.240 601 671 4.5E-83 T 10-10-2018 VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 SUPERFAMILY SSF50447 261 399 1.44E-31 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VF_0529 091fb46da3886774b7f7f30ef569ff5e 695 SUPERFAMILY SSF54980 600 688 2.78E-28 T 10-10-2018 IPR035647 EF-G domain III/V-like VF_0125 2cb3e3c33ee957ba44e2b42c6a522ae2 409 SUPERFAMILY SSF102645 194 407 1.02E-78 T 10-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 VF_0125 2cb3e3c33ee957ba44e2b42c6a522ae2 409 Gene3D G3DSA:3.40.50.1950 1 190 5.1E-56 T 10-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 VF_0125 2cb3e3c33ee957ba44e2b42c6a522ae2 409 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 196 380 9.8E-75 T 10-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 VF_0125 2cb3e3c33ee957ba44e2b42c6a522ae2 409 Gene3D G3DSA:3.40.50.10300 192 409 1.6E-83 T 10-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 VF_0125 2cb3e3c33ee957ba44e2b42c6a522ae2 409 Pfam PF02441 Flavoprotein 7 179 3.8E-44 T 10-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 VF_0125 2cb3e3c33ee957ba44e2b42c6a522ae2 409 SUPERFAMILY SSF52507 3 181 3.92E-61 T 10-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 VF_0125 2cb3e3c33ee957ba44e2b42c6a522ae2 409 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 4 405 1.3E-150 T 10-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 VF_A0330 d198575f961608fb9ea0b5684f6a8c74 500 Pfam PF07603 Protein of unknown function (DUF1566) 307 449 2.9E-12 T 10-10-2018 IPR011460 Protein of unknown function DUF1566 VF_A0015 6e3871fa1a1b0cef0d744870f6e02674 528 SUPERFAMILY SSF52540 297 519 8.65E-42 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0015 6e3871fa1a1b0cef0d744870f6e02674 528 Pfam PF00005 ABC transporter 332 459 1.1E-16 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0015 6e3871fa1a1b0cef0d744870f6e02674 528 SUPERFAMILY SSF52540 3 230 2.3E-42 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0015 6e3871fa1a1b0cef0d744870f6e02674 528 Pfam PF12848 ABC transporter 216 301 2.4E-21 T 10-10-2018 IPR032781 ABC-transporter extension domain VF_A0015 6e3871fa1a1b0cef0d744870f6e02674 528 SMART SM00382 18 230 3.0E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0015 6e3871fa1a1b0cef0d744870f6e02674 528 SMART SM00382 336 504 1.4E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0015 6e3871fa1a1b0cef0d744870f6e02674 528 Pfam PF00005 ABC transporter 10 176 1.1E-20 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0015 6e3871fa1a1b0cef0d744870f6e02674 528 Gene3D G3DSA:3.40.50.300 274 527 1.4E-50 T 10-10-2018 VF_A0015 6e3871fa1a1b0cef0d744870f6e02674 528 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0015 6e3871fa1a1b0cef0d744870f6e02674 528 Gene3D G3DSA:3.40.50.300 2 273 1.3E-53 T 10-10-2018 VF_0931 de7e55dffbf6b882ed53903247b68c73 210 PIRSF PIRSF006091 1 205 2.1E-79 T 10-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 VF_0931 de7e55dffbf6b882ed53903247b68c73 210 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 2 195 27.825 T 10-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 VF_0931 de7e55dffbf6b882ed53903247b68c73 210 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 10 194 4.6E-67 T 10-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 VF_0931 de7e55dffbf6b882ed53903247b68c73 210 SMART SM00900 101 193 6.0E-35 T 10-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 VF_0931 de7e55dffbf6b882ed53903247b68c73 210 Pfam PF04205 FMN-binding domain 101 189 8.6E-21 T 10-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 VF_0165 76b634c77824e85dd7f093ff0582b05d 720 Pfam PF13807 G-rich domain on putative tyrosine kinase 370 450 1.2E-33 T 10-10-2018 IPR032807 Tyrosine kinase, G-rich domain VF_0165 76b634c77824e85dd7f093ff0582b05d 720 Pfam PF13614 AAA domain 539 651 3.4E-11 T 10-10-2018 IPR025669 AAA domain VF_0165 76b634c77824e85dd7f093ff0582b05d 720 SUPERFAMILY SSF52540 527 706 5.99E-37 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0165 76b634c77824e85dd7f093ff0582b05d 720 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 509 712 6.3E-49 T 10-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 VF_0165 76b634c77824e85dd7f093ff0582b05d 720 Gene3D G3DSA:3.40.50.300 445 720 6.0E-80 T 10-10-2018 VF_0165 76b634c77824e85dd7f093ff0582b05d 720 Pfam PF02706 Chain length determinant protein 15 107 9.4E-22 T 10-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 VF_0434 0c779aadbeefcbeba619ca810f247ac9 187 SUPERFAMILY SSF143456 2 187 1.83E-65 T 10-10-2018 VF_0434 0c779aadbeefcbeba619ca810f247ac9 187 Gene3D G3DSA:3.40.1740.10 1 187 1.1E-66 T 10-10-2018 VF_0434 0c779aadbeefcbeba619ca810f247ac9 187 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 1 187 38.597 T 10-10-2018 IPR003774 Protein of unknown function UPF0301 VF_0434 0c779aadbeefcbeba619ca810f247ac9 187 Pfam PF02622 Uncharacterized ACR, COG1678 12 174 7.6E-49 T 10-10-2018 IPR003774 Protein of unknown function UPF0301 VF_A0039 5205699eb208a0c4655823e20f428946 446 Gene3D G3DSA:1.20.1250.20 239 438 1.2E-43 T 10-10-2018 VF_A0039 5205699eb208a0c4655823e20f428946 446 Gene3D G3DSA:1.20.1250.20 19 223 2.3E-52 T 10-10-2018 VF_A0039 5205699eb208a0c4655823e20f428946 446 PIRSF PIRSF002808 7 444 1.4E-141 T 10-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 VF_A0039 5205699eb208a0c4655823e20f428946 446 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 413 5.7E-138 T 10-10-2018 VF_A0039 5205699eb208a0c4655823e20f428946 446 SUPERFAMILY SSF103473 19 431 1.07E-79 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0039 5205699eb208a0c4655823e20f428946 446 Pfam PF07690 Major Facilitator Superfamily 36 396 4.7E-49 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_A0039 5205699eb208a0c4655823e20f428946 446 ProSitePatterns PS00942 glpT family of transporters signature. 151 167 - T 10-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 VF_2242 0031d559f3c00a4e8b75ebaef0f2234f 225 Pfam PF16537 Type II secretion system protein B 160 219 3.7E-22 T 10-10-2018 IPR032389 Type II secretion system protein B VF_A0743 f8b4bbdf7135412074d860b2d31afe44 355 Gene3D G3DSA:2.40.50.100 46 174 1.5E-17 T 10-10-2018 VF_A0743 f8b4bbdf7135412074d860b2d31afe44 355 Pfam PF13533 Biotin-lipoyl like 45 91 8.6E-15 T 10-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VF_A0743 f8b4bbdf7135412074d860b2d31afe44 355 SUPERFAMILY SSF111369 45 167 1.44E-11 T 10-10-2018 VF_A0743 f8b4bbdf7135412074d860b2d31afe44 355 SUPERFAMILY SSF111369 180 257 2.09E-5 T 10-10-2018 VF_A0743 f8b4bbdf7135412074d860b2d31afe44 355 Gene3D G3DSA:2.40.30.170 218 336 2.2E-19 T 10-10-2018 VF_A0743 f8b4bbdf7135412074d860b2d31afe44 355 Gene3D G3DSA:1.10.287.470 79 173 1.5E-17 T 10-10-2018 VF_A0743 f8b4bbdf7135412074d860b2d31afe44 355 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 189 268 6.9E-9 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VF_1076 d43c1fba72275b0c7946df0efabcd685 213 Gene3D G3DSA:3.90.420.10 42 208 1.8E-24 T 10-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 VF_1076 d43c1fba72275b0c7946df0efabcd685 213 Pfam PF00174 Oxidoreductase molybdopterin binding domain 43 176 4.0E-20 T 10-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 VF_1076 d43c1fba72275b0c7946df0efabcd685 213 SUPERFAMILY SSF56524 43 182 3.53E-32 T 10-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 VF_1651 12ab642f30f959974cbfe3fb440d1fd6 235 Pfam PF00194 Eukaryotic-type carbonic anhydrase 24 233 4.2E-52 T 10-10-2018 IPR001148 Alpha carbonic anhydrase domain VF_1651 12ab642f30f959974cbfe3fb440d1fd6 235 Gene3D G3DSA:3.10.200.10 18 235 2.0E-80 T 10-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily VF_1651 12ab642f30f959974cbfe3fb440d1fd6 235 SUPERFAMILY SSF51069 24 233 1.07E-75 T 10-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily VF_1651 12ab642f30f959974cbfe3fb440d1fd6 235 ProSitePatterns PS00162 Alpha-carbonic anhydrases signature. 108 124 - T 10-10-2018 IPR018338 Carbonic anhydrase, alpha-class, conserved site GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117|Reactome: R-HSA-1475029 VF_1651 12ab642f30f959974cbfe3fb440d1fd6 235 SMART SM01057 25 234 1.5E-102 T 10-10-2018 IPR001148 Alpha carbonic anhydrase domain VF_0910 999175f9cc87cb2fc867269c74e1309b 107 Gene3D G3DSA:3.10.450.140 6 106 1.5E-41 T 10-10-2018 IPR036763 Putative dsDNA mimic superfamily VF_0910 999175f9cc87cb2fc867269c74e1309b 107 PIRSF PIRSF004916 1 106 4.9E-50 T 10-10-2018 IPR007376 dsDNA mimic, putative VF_0910 999175f9cc87cb2fc867269c74e1309b 107 Pfam PF04269 Protein of unknown function, DUF440 6 106 3.8E-46 T 10-10-2018 IPR007376 dsDNA mimic, putative VF_0910 999175f9cc87cb2fc867269c74e1309b 107 Hamap MF_00680 UPF0263 protein YciU [yciU]. 2 107 34.825 T 10-10-2018 IPR007376 dsDNA mimic, putative VF_0910 999175f9cc87cb2fc867269c74e1309b 107 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 9 105 1.0E-50 T 10-10-2018 IPR007376 dsDNA mimic, putative VF_0910 999175f9cc87cb2fc867269c74e1309b 107 SUPERFAMILY SSF102816 3 106 5.89E-51 T 10-10-2018 IPR036763 Putative dsDNA mimic superfamily VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 SUPERFAMILY SSF82693 554 657 2.77E-15 T 10-10-2018 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 Gene3D G3DSA:3.30.70.1440 654 848 4.3E-302 T 10-10-2018 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 SUPERFAMILY SSF82866 793 1009 3.4E-48 T 10-10-2018 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 7.4E-272 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 SUPERFAMILY SSF82693 139 324 8.11E-18 T 10-10-2018 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 SUPERFAMILY SSF82693 40 134 7.32E-24 T 10-10-2018 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 Gene3D G3DSA:3.30.70.1430 556 653 4.3E-302 T 10-10-2018 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 SUPERFAMILY SSF82714 704 787 1.44E-16 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 Gene3D G3DSA:3.30.70.1320 134 326 4.3E-302 T 10-10-2018 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 Gene3D G3DSA:1.20.1640.10 502 1005 4.3E-302 T 10-10-2018 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 Gene3D G3DSA:1.20.1640.10 10 501 4.3E-302 T 10-10-2018 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 Gene3D G3DSA:3.30.70.1430 40 799 4.3E-302 T 10-10-2018 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 8.6E-71 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 611 625 8.6E-71 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 8.6E-71 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 8.6E-71 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 8.6E-71 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 8.6E-71 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 8.6E-71 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 8.6E-71 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 8.6E-71 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 Gene3D G3DSA:3.30.2090.10 703 791 4.3E-302 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 SUPERFAMILY SSF82866 291 489 1.05E-44 T 10-10-2018 VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 Gene3D G3DSA:3.30.2090.10 178 269 4.3E-302 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_1581 8bb39eaa604e8cc6f321ac3c3bd6e8e0 1036 SUPERFAMILY SSF82714 183 266 3.66E-15 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_0645 c187ca1da1f39206cea213bb99c265b0 382 Gene3D G3DSA:3.90.180.10 17 375 8.4E-153 T 10-10-2018 VF_0645 c187ca1da1f39206cea213bb99c265b0 382 SUPERFAMILY SSF50129 10 196 5.31E-72 T 10-10-2018 IPR011032 GroES-like superfamily VF_0645 c187ca1da1f39206cea213bb99c265b0 382 SUPERFAMILY SSF50129 329 379 2.5E-11 T 10-10-2018 IPR011032 GroES-like superfamily VF_0645 c187ca1da1f39206cea213bb99c265b0 382 SMART SM00829 23 378 0.0049 T 10-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VF_0645 c187ca1da1f39206cea213bb99c265b0 382 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 39 165 1.7E-26 T 10-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VF_0645 c187ca1da1f39206cea213bb99c265b0 382 Pfam PF00107 Zinc-binding dehydrogenase 208 331 8.7E-25 T 10-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 VF_0645 c187ca1da1f39206cea213bb99c265b0 382 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 13 380 2.7E-231 T 10-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 VF_0645 c187ca1da1f39206cea213bb99c265b0 382 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 72 86 - T 10-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 VF_0645 c187ca1da1f39206cea213bb99c265b0 382 Gene3D G3DSA:3.40.50.720 185 323 8.4E-153 T 10-10-2018 VF_0645 c187ca1da1f39206cea213bb99c265b0 382 SUPERFAMILY SSF51735 171 345 1.49E-49 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0648 c187ca1da1f39206cea213bb99c265b0 382 Gene3D G3DSA:3.90.180.10 17 375 8.4E-153 T 10-10-2018 VF_0648 c187ca1da1f39206cea213bb99c265b0 382 SUPERFAMILY SSF50129 10 196 5.31E-72 T 10-10-2018 IPR011032 GroES-like superfamily VF_0648 c187ca1da1f39206cea213bb99c265b0 382 SUPERFAMILY SSF50129 329 379 2.5E-11 T 10-10-2018 IPR011032 GroES-like superfamily VF_0648 c187ca1da1f39206cea213bb99c265b0 382 SMART SM00829 23 378 0.0049 T 10-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VF_0648 c187ca1da1f39206cea213bb99c265b0 382 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 39 165 1.7E-26 T 10-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VF_0648 c187ca1da1f39206cea213bb99c265b0 382 Pfam PF00107 Zinc-binding dehydrogenase 208 331 8.7E-25 T 10-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 VF_0648 c187ca1da1f39206cea213bb99c265b0 382 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 13 380 2.7E-231 T 10-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 VF_0648 c187ca1da1f39206cea213bb99c265b0 382 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 72 86 - T 10-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 VF_0648 c187ca1da1f39206cea213bb99c265b0 382 Gene3D G3DSA:3.40.50.720 185 323 8.4E-153 T 10-10-2018 VF_0648 c187ca1da1f39206cea213bb99c265b0 382 SUPERFAMILY SSF51735 171 345 1.49E-49 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1887 b49e444765c56df2a4d3607bcdad66b7 474 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 308 6.0E-113 T 10-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 VF_1887 b49e444765c56df2a4d3607bcdad66b7 474 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 464 31.863 T 10-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 VF_1887 b49e444765c56df2a4d3607bcdad66b7 474 Gene3D G3DSA:3.40.50.620 2 317 6.1E-132 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_1887 b49e444765c56df2a4d3607bcdad66b7 474 SUPERFAMILY SSF48163 302 464 1.14E-45 T 10-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 VF_1887 b49e444765c56df2a4d3607bcdad66b7 474 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 465 1.0E-193 T 10-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 VF_1887 b49e444765c56df2a4d3607bcdad66b7 474 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_1887 b49e444765c56df2a4d3607bcdad66b7 474 Gene3D G3DSA:1.10.10.350 370 472 9.9E-24 T 10-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 VF_1887 b49e444765c56df2a4d3607bcdad66b7 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 198 206 1.9E-26 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VF_1887 b49e444765c56df2a4d3607bcdad66b7 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 182 192 1.9E-26 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VF_1887 b49e444765c56df2a4d3607bcdad66b7 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 1.9E-26 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VF_1887 b49e444765c56df2a4d3607bcdad66b7 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 1.9E-26 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VF_1887 b49e444765c56df2a4d3607bcdad66b7 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 1.9E-26 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VF_1887 b49e444765c56df2a4d3607bcdad66b7 474 SUPERFAMILY SSF52374 3 301 3.75E-107 T 10-10-2018 VF_A0032 35ec834db25e0977fd3dc823aa1d01c8 177 Pfam PF08534 Redoxin 8 149 1.3E-26 T 10-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 VF_A0032 35ec834db25e0977fd3dc823aa1d01c8 177 Gene3D G3DSA:3.40.30.10 7 165 3.5E-22 T 10-10-2018 VF_A0032 35ec834db25e0977fd3dc823aa1d01c8 177 SUPERFAMILY SSF52833 8 175 3.35E-32 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 SUPERFAMILY SSF52374 4 667 3.15E-147 T 10-10-2018 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 Gene3D G3DSA:3.90.740.10 227 414 0.0 T 10-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 6.0E-52 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 6.0E-52 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 6.0E-52 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 6.0E-52 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 556 566 6.0E-52 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 6.0E-52 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 523 545 6.0E-52 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 404 3.8E-79 T 10-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 SUPERFAMILY SSF50677 226 415 6.38E-58 T 10-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 SUPERFAMILY SSF47323 661 857 2.62E-31 T 10-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 857 23.331 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 Gene3D G3DSA:3.10.20.590 797 857 1.3E-21 T 10-10-2018 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 618 650 1.8E-7 T 10-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 418 571 1.6E-9 T 10-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 172 1.1E-26 T 10-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 Gene3D G3DSA:3.40.50.620 33 565 0.0 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 857 0.0 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 Gene3D G3DSA:3.10.330.110 566 627 0.0 T 10-10-2018 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 Pfam PF08264 Anticodon-binding domain of tRNA 700 820 7.6E-13 T 10-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 VF_0753 aaaddd33f00b53a2605d54c3d2089fff 858 Gene3D G3DSA:1.10.730.10 8 789 0.0 T 10-10-2018 VF_A0476 d4c1907a8a752143c2135650b96fce8a 430 SMART SM01079 37 207 4.4E-7 T 10-10-2018 IPR006189 CHASE domain VF_A0476 d4c1907a8a752143c2135650b96fce8a 430 Gene3D G3DSA:3.30.70.270 271 430 1.2E-42 T 10-10-2018 VF_A0476 d4c1907a8a752143c2135650b96fce8a 430 SMART SM00267 268 430 8.1E-39 T 10-10-2018 IPR000160 GGDEF domain VF_A0476 d4c1907a8a752143c2135650b96fce8a 430 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 277 429 9.9E-32 T 10-10-2018 IPR000160 GGDEF domain VF_A0476 d4c1907a8a752143c2135650b96fce8a 430 Pfam PF03924 CHASE domain 95 179 1.9E-9 T 10-10-2018 IPR006189 CHASE domain VF_A0476 d4c1907a8a752143c2135650b96fce8a 430 Pfam PF00990 Diguanylate cyclase, GGDEF domain 279 427 2.8E-36 T 10-10-2018 IPR000160 GGDEF domain VF_A0476 d4c1907a8a752143c2135650b96fce8a 430 SUPERFAMILY SSF55073 283 427 9.61E-40 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0063 380fd668a6b0eb1fd1c895073276e107 172 Pfam PF05068 Mannitol repressor 6 166 7.6E-48 T 10-10-2018 IPR007761 Mannitol repressor MtlR-like VF_A0063 380fd668a6b0eb1fd1c895073276e107 172 Gene3D G3DSA:1.20.120.330 2 168 6.4E-50 T 10-10-2018 VF_A0063 380fd668a6b0eb1fd1c895073276e107 172 SUPERFAMILY SSF158668 5 166 3.92E-49 T 10-10-2018 IPR038026 MtlR-like superfamily VF_1991 df8c5a1b6fdd4c8315f2cf33ae6f965f 84 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_1991 df8c5a1b6fdd4c8315f2cf33ae6f965f 84 Pfam PF12838 4Fe-4S dicluster domain 8 55 6.4E-7 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_1991 df8c5a1b6fdd4c8315f2cf33ae6f965f 84 SUPERFAMILY SSF54862 6 64 8.38E-17 T 10-10-2018 VF_1991 df8c5a1b6fdd4c8315f2cf33ae6f965f 84 Gene3D G3DSA:3.30.70.20 2 83 2.4E-33 T 10-10-2018 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 Gene3D G3DSA:3.40.50.1370 151 319 1.8E-142 T 10-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 SUPERFAMILY SSF53671 4 333 3.67E-98 T 10-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 332 1.8E-131 T 10-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 268 277 3.0E-25 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 297 320 3.0E-25 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 3.0E-25 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 3.0E-25 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 1.1E-45 T 10-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 7 333 81.985 T 10-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 311 322 4.1E-32 T 10-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 84 97 4.1E-32 T 10-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 124 138 4.1E-32 T 10-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 51 65 4.1E-32 T 10-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 230 240 4.1E-32 T 10-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 Gene3D G3DSA:3.40.50.1370 5 329 1.8E-142 T 10-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VF_0407 c7278a3077f2a45c4a69ed8c984276bd 334 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 157 330 3.9E-55 T 10-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 VF_1337 6aabe5df21af37946da957a167939e94 181 Gene3D G3DSA:2.160.10.10 1 181 3.0E-68 T 10-10-2018 VF_1337 6aabe5df21af37946da957a167939e94 181 Pfam PF12464 Maltose acetyltransferase 6 54 1.1E-16 T 10-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VF_1337 6aabe5df21af37946da957a167939e94 181 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 128 162 4.3E-10 T 10-10-2018 IPR001451 Hexapeptide repeat VF_1337 6aabe5df21af37946da957a167939e94 181 SMART SM01266 4 57 3.0E-16 T 10-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VF_1337 6aabe5df21af37946da957a167939e94 181 SUPERFAMILY SSF51161 1 179 2.91E-49 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_0768 1c419d3880f185b81257d6e97ee51d62 362 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 359 40.345 T 10-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 VF_0768 1c419d3880f185b81257d6e97ee51d62 362 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 230 246 - T 10-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 VF_0768 1c419d3880f185b81257d6e97ee51d62 362 Pfam PF00472 RF-1 domain 218 323 3.2E-38 T 10-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 VF_0768 1c419d3880f185b81257d6e97ee51d62 362 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 360 1.0E-167 T 10-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 VF_0768 1c419d3880f185b81257d6e97ee51d62 362 Pfam PF03462 PCRF domain 13 205 2.7E-77 T 10-10-2018 IPR005139 Peptide chain release factor GO:0006415 VF_0768 1c419d3880f185b81257d6e97ee51d62 362 Gene3D G3DSA:3.30.70.1660 115 340 7.6E-94 T 10-10-2018 VF_0768 1c419d3880f185b81257d6e97ee51d62 362 Gene3D G3DSA:1.20.58.410 2 97 1.1E-9 T 10-10-2018 VF_0768 1c419d3880f185b81257d6e97ee51d62 362 Gene3D G3DSA:3.30.160.20 212 293 7.6E-94 T 10-10-2018 VF_0768 1c419d3880f185b81257d6e97ee51d62 362 SMART SM00937 67 180 8.6E-68 T 10-10-2018 IPR005139 Peptide chain release factor GO:0006415 VF_0768 1c419d3880f185b81257d6e97ee51d62 362 SUPERFAMILY SSF75620 12 355 8.63E-136 T 10-10-2018 VF_2383 aa67c1eebee9b4a7703ae076fc83a989 649 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 3.3E-24 T 10-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VF_2383 aa67c1eebee9b4a7703ae076fc83a989 649 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 10-10-2018 IPR020845 AMP-binding, conserved site VF_2383 aa67c1eebee9b4a7703ae076fc83a989 649 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 643 0.0 T 10-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 VF_2383 aa67c1eebee9b4a7703ae076fc83a989 649 Pfam PF00501 AMP-binding enzyme 84 522 4.8E-89 T 10-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VF_2383 aa67c1eebee9b4a7703ae076fc83a989 649 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 645 52.579 T 10-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 VF_2383 aa67c1eebee9b4a7703ae076fc83a989 649 Gene3D G3DSA:3.30.300.30 518 649 5.8E-30 T 10-10-2018 VF_2383 aa67c1eebee9b4a7703ae076fc83a989 649 Gene3D G3DSA:3.40.50.12780 50 515 6.9E-103 T 10-10-2018 VF_2383 aa67c1eebee9b4a7703ae076fc83a989 649 SUPERFAMILY SSF56801 7 643 1.96E-180 T 10-10-2018 VF_2383 aa67c1eebee9b4a7703ae076fc83a989 649 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 1.1E-19 T 10-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 VF_A0860 d80ee6f818843ba9b2f0130a52f3f90d 160 SMART SM00862 22 95 7.5E-11 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0860 d80ee6f818843ba9b2f0130a52f3f90d 160 SUPERFAMILY SSF46894 8 97 8.79E-15 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_A0860 d80ee6f818843ba9b2f0130a52f3f90d 160 Pfam PF00486 Transcriptional regulatory protein, C terminal 25 95 3.9E-13 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0860 d80ee6f818843ba9b2f0130a52f3f90d 160 Gene3D G3DSA:1.10.10.10 3 118 1.8E-17 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0925 e53bbb5763bc803352cc73b32c1ef22b 222 Pfam PF00929 Exonuclease 21 196 3.1E-39 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_0925 e53bbb5763bc803352cc73b32c1ef22b 222 TIGRFAM TIGR01298 RNaseT: ribonuclease T 11 210 2.7E-100 T 10-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 VF_0925 e53bbb5763bc803352cc73b32c1ef22b 222 SMART SM00479 19 205 1.2E-34 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_0925 e53bbb5763bc803352cc73b32c1ef22b 222 SUPERFAMILY SSF53098 9 209 2.94E-55 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_0925 e53bbb5763bc803352cc73b32c1ef22b 222 Hamap MF_00157 Ribonuclease T [rnt]. 1 222 115.624 T 10-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 VF_0925 e53bbb5763bc803352cc73b32c1ef22b 222 Gene3D G3DSA:3.30.420.10 10 216 6.7E-55 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_0658 bd44713ab803cc7379caeded63266af3 301 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 53.595 T 10-10-2018 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK VF_0658 bd44713ab803cc7379caeded63266af3 301 Gene3D G3DSA:3.30.470.80 182 299 4.7E-44 T 10-10-2018 VF_0658 bd44713ab803cc7379caeded63266af3 301 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 286 2.4E-87 T 10-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 VF_0658 bd44713ab803cc7379caeded63266af3 301 Pfam PF08443 RimK-like ATP-grasp domain 98 286 5.0E-68 T 10-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 VF_0658 bd44713ab803cc7379caeded63266af3 301 SUPERFAMILY SSF56059 98 288 7.78E-51 T 10-10-2018 VF_0658 bd44713ab803cc7379caeded63266af3 301 Gene3D G3DSA:3.40.50.20 1 114 7.6E-40 T 10-10-2018 VF_0658 bd44713ab803cc7379caeded63266af3 301 Gene3D G3DSA:3.30.1490.20 115 181 5.0E-26 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VF_0756 6653bd3e579546c6c74b4673c096fa93 292 Gene3D G3DSA:3.30.465.10 196 289 2.5E-32 T 10-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VF_0756 6653bd3e579546c6c74b4673c096fa93 292 SUPERFAMILY SSF56176 201 289 3.0E-24 T 10-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VF_0756 6653bd3e579546c6c74b4673c096fa93 292 SMART SM01091 203 281 9.8E-30 T 10-10-2018 IPR005170 Transporter-associated domain VF_0756 6653bd3e579546c6c74b4673c096fa93 292 SUPERFAMILY SSF54631 64 199 2.44E-33 T 10-10-2018 VF_0756 6653bd3e579546c6c74b4673c096fa93 292 Pfam PF03471 Transporter associated domain 204 279 9.3E-22 T 10-10-2018 IPR005170 Transporter-associated domain VF_0756 6653bd3e579546c6c74b4673c096fa93 292 Pfam PF00571 CBS domain 138 187 4.3E-7 T 10-10-2018 IPR000644 CBS domain VF_0756 6653bd3e579546c6c74b4673c096fa93 292 Pfam PF00571 CBS domain 67 124 1.6E-8 T 10-10-2018 IPR000644 CBS domain VF_0756 6653bd3e579546c6c74b4673c096fa93 292 Gene3D G3DSA:3.10.580.10 49 195 1.8E-54 T 10-10-2018 VF_0756 6653bd3e579546c6c74b4673c096fa93 292 SMART SM00116 76 125 0.0086 T 10-10-2018 IPR000644 CBS domain VF_0756 6653bd3e579546c6c74b4673c096fa93 292 SMART SM00116 139 187 0.051 T 10-10-2018 IPR000644 CBS domain VF_1782 50ee964138bf95154ba2f57438985b40 496 SUPERFAMILY SSF52218 251 395 6.46E-33 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_1782 50ee964138bf95154ba2f57438985b40 496 Pfam PF00258 Flavodoxin 256 387 2.3E-10 T 10-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 VF_1782 50ee964138bf95154ba2f57438985b40 496 SMART SM00849 34 227 7.9E-28 T 10-10-2018 IPR001279 Metallo-beta-lactamase VF_1782 50ee964138bf95154ba2f57438985b40 496 Pfam PF00753 Metallo-beta-lactamase superfamily 34 175 8.9E-9 T 10-10-2018 IPR001279 Metallo-beta-lactamase VF_1782 50ee964138bf95154ba2f57438985b40 496 Hamap MF_01312 Anaerobic nitric oxide reductase flavorubredoxin [norV]. 1 496 75.694 T 10-10-2018 IPR023957 Anaerobic nitric oxide reductase flavorubredoxin GO:0005506|GO:0016966 VF_1782 50ee964138bf95154ba2f57438985b40 496 SUPERFAMILY SSF56281 9 282 2.03E-49 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VF_1782 50ee964138bf95154ba2f57438985b40 496 Pfam PF00301 Rubredoxin 448 492 5.6E-17 T 10-10-2018 IPR024935 Rubredoxin domain GO:0005506 VF_1782 50ee964138bf95154ba2f57438985b40 496 SUPERFAMILY SSF57802 445 495 5.39E-17 T 10-10-2018 VF_1782 50ee964138bf95154ba2f57438985b40 496 Gene3D G3DSA:3.40.50.360 253 395 2.8E-37 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_1782 50ee964138bf95154ba2f57438985b40 496 PIRSF PIRSF005243 1 399 6.2E-167 T 10-10-2018 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 VF_1782 50ee964138bf95154ba2f57438985b40 496 Gene3D G3DSA:2.20.28.10 445 496 2.4E-19 T 10-10-2018 VF_1782 50ee964138bf95154ba2f57438985b40 496 PRINTS PR00163 Rubredoxin signature 446 462 3.2E-5 T 10-10-2018 IPR024935 Rubredoxin domain GO:0005506 VF_1782 50ee964138bf95154ba2f57438985b40 496 PRINTS PR00163 Rubredoxin signature 476 492 3.2E-5 T 10-10-2018 IPR024935 Rubredoxin domain GO:0005506 VF_1782 50ee964138bf95154ba2f57438985b40 496 Gene3D G3DSA:3.60.15.10 1 247 1.4E-104 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VF_A1045 5bbdd01872715a127a5fb0a546124423 132 Pfam PF04219 Protein of unknown function, DUF 26 113 2.6E-32 T 10-10-2018 IPR007335 Protein of unknown function DUF413 VF_2528 ae97a3f12a98be2ed12996be6a5be9c2 494 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 22 488 37.065 T 10-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VF_2528 ae97a3f12a98be2ed12996be6a5be9c2 494 Gene3D G3DSA:1.10.1040.10 209 494 3.4E-118 T 10-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VF_2528 ae97a3f12a98be2ed12996be6a5be9c2 494 SUPERFAMILY SSF48179 210 341 8.16E-39 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VF_2528 ae97a3f12a98be2ed12996be6a5be9c2 494 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 367 1.4E-124 T 10-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VF_2528 ae97a3f12a98be2ed12996be6a5be9c2 494 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 354 485 3.0E-17 T 10-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VF_2528 ae97a3f12a98be2ed12996be6a5be9c2 494 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 341 3.0E-25 T 10-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VF_2528 ae97a3f12a98be2ed12996be6a5be9c2 494 SUPERFAMILY SSF51735 28 209 9.69E-58 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_2528 ae97a3f12a98be2ed12996be6a5be9c2 494 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 35 204 2.1E-60 T 10-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VF_2528 ae97a3f12a98be2ed12996be6a5be9c2 494 Gene3D G3DSA:3.40.50.720 1 208 2.1E-86 T 10-10-2018 VF_2528 ae97a3f12a98be2ed12996be6a5be9c2 494 SUPERFAMILY SSF48179 348 487 3.74E-42 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VF_0449 109be906a8f8d19d46240362bfc04ed9 258 SUPERFAMILY SSF54423 46 103 2.88E-14 T 10-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 VF_0449 109be906a8f8d19d46240362bfc04ed9 258 Pfam PF13098 Thioredoxin-like domain 128 253 3.9E-29 T 10-10-2018 IPR012336 Thioredoxin-like fold VF_0449 109be906a8f8d19d46240362bfc04ed9 258 ProSitePatterns PS00194 Thioredoxin family active site. 135 153 - T 10-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VF_0449 109be906a8f8d19d46240362bfc04ed9 258 Pfam PF10411 Disulfide bond isomerase protein N-terminus 51 100 6.2E-13 T 10-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal VF_0449 109be906a8f8d19d46240362bfc04ed9 258 SUPERFAMILY SSF52833 115 257 1.18E-36 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_0449 109be906a8f8d19d46240362bfc04ed9 258 Gene3D G3DSA:3.10.450.70 40 99 9.6E-20 T 10-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 VF_0449 109be906a8f8d19d46240362bfc04ed9 258 Gene3D G3DSA:3.40.30.10 100 258 7.2E-47 T 10-10-2018 VF_1054 248283cb7b7d348a3b53b5b10360ab09 157 Pfam PF00072 Response regulator receiver domain 7 123 1.5E-13 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1054 248283cb7b7d348a3b53b5b10360ab09 157 SMART SM00448 4 125 2.1E-11 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1054 248283cb7b7d348a3b53b5b10360ab09 157 Gene3D G3DSA:3.40.50.2300 1 143 4.5E-18 T 10-10-2018 VF_1054 248283cb7b7d348a3b53b5b10360ab09 157 SUPERFAMILY SSF52172 2 130 1.57E-19 T 10-10-2018 IPR011006 CheY-like superfamily VF_0608 c03dc49cb704ad747bba6819dba108af 334 Gene3D G3DSA:3.40.50.2300 155 333 2.5E-51 T 10-10-2018 VF_0608 c03dc49cb704ad747bba6819dba108af 334 Gene3D G3DSA:3.40.50.2300 59 150 1.0E-15 T 10-10-2018 VF_0608 c03dc49cb704ad747bba6819dba108af 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 1.5E-5 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_0608 c03dc49cb704ad747bba6819dba108af 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 1.5E-5 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_0608 c03dc49cb704ad747bba6819dba108af 334 Gene3D G3DSA:1.10.260.40 3 58 2.3E-20 T 10-10-2018 VF_0608 c03dc49cb704ad747bba6819dba108af 334 SUPERFAMILY SSF53822 61 332 1.43E-77 T 10-10-2018 IPR028082 Periplasmic binding protein-like I VF_0608 c03dc49cb704ad747bba6819dba108af 334 Pfam PF13377 Periplasmic binding protein-like domain 169 330 2.3E-35 T 10-10-2018 VF_0608 c03dc49cb704ad747bba6819dba108af 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 7.3E-18 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_0608 c03dc49cb704ad747bba6819dba108af 334 SMART SM00354 1 71 2.1E-29 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_0608 c03dc49cb704ad747bba6819dba108af 334 SUPERFAMILY SSF47413 1 59 9.38E-17 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_A0509 6124d5fd265ced163f8bf4fbfe4222fc 608 Gene3D G3DSA:3.40.50.300 351 604 2.7E-93 T 10-10-2018 VF_A0509 6124d5fd265ced163f8bf4fbfe4222fc 608 SMART SM00382 386 577 1.1E-19 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0509 6124d5fd265ced163f8bf4fbfe4222fc 608 SUPERFAMILY SSF90123 28 344 1.7E-52 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_A0509 6124d5fd265ced163f8bf4fbfe4222fc 608 Gene3D G3DSA:1.20.1560.10 6 349 3.1E-28 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_A0509 6124d5fd265ced163f8bf4fbfe4222fc 608 Pfam PF00005 ABC transporter 378 531 1.0E-34 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0509 6124d5fd265ced163f8bf4fbfe4222fc 608 Pfam PF00664 ABC transporter transmembrane region 44 308 8.8E-19 T 10-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VF_A0509 6124d5fd265ced163f8bf4fbfe4222fc 608 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0509 6124d5fd265ced163f8bf4fbfe4222fc 608 SUPERFAMILY SSF52540 351 601 4.82E-90 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2432 2847dfa84b3b0115dd4c88541676cf00 116 Gene3D G3DSA:3.30.70.330 46 115 1.4E-16 T 10-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VF_2432 2847dfa84b3b0115dd4c88541676cf00 116 SUPERFAMILY SSF54928 47 113 1.34E-16 T 10-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 VF_2432 2847dfa84b3b0115dd4c88541676cf00 116 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 113 8.4E-11 T 10-10-2018 IPR000504 RNA recognition motif domain GO:0003676 VF_A0274 cf64ab6bb93a104c3990465dbd3381aa 375 Pfam PF00487 Fatty acid desaturase 43 262 4.4E-21 T 10-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 VF_A0274 cf64ab6bb93a104c3990465dbd3381aa 375 PIRSF PIRSF000345 3 333 1.4E-99 T 10-10-2018 IPR009160 Acyl-CoA desaturase, haem/steroid binding domain-containing GO:0004768|GO:0006636|GO:0016021 MetaCyc: PWY-5987|MetaCyc: PWY-5996 VF_A0274 cf64ab6bb93a104c3990465dbd3381aa 375 PRINTS PR00075 Fatty acid desaturase family 1 signature 11 31 1.1E-29 T 10-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VF_A0274 cf64ab6bb93a104c3990465dbd3381aa 375 PRINTS PR00075 Fatty acid desaturase family 1 signature 61 81 1.1E-29 T 10-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VF_A0274 cf64ab6bb93a104c3990465dbd3381aa 375 PRINTS PR00075 Fatty acid desaturase family 1 signature 99 128 1.1E-29 T 10-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VF_A0274 cf64ab6bb93a104c3990465dbd3381aa 375 PRINTS PR00075 Fatty acid desaturase family 1 signature 189 210 1.1E-29 T 10-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VF_A0274 cf64ab6bb93a104c3990465dbd3381aa 375 PRINTS PR00075 Fatty acid desaturase family 1 signature 232 246 1.1E-29 T 10-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VF_A0274 cf64ab6bb93a104c3990465dbd3381aa 375 PRINTS PR00075 Fatty acid desaturase family 1 signature 158 176 1.1E-29 T 10-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VF_2085 36be9d927a3860791d40b21d40b84fd0 238 Hamap MF_00201 DNA repair protein RecO [recO]. 2 233 22.661 T 10-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 VF_2085 36be9d927a3860791d40b21d40b84fd0 238 Gene3D G3DSA:1.20.1440.120 80 236 2.9E-52 T 10-10-2018 VF_2085 36be9d927a3860791d40b21d40b84fd0 238 SUPERFAMILY SSF57863 87 180 2.56E-12 T 10-10-2018 IPR037278 ARFGAP/RecO-like zinc finger VF_2085 36be9d927a3860791d40b21d40b84fd0 238 TIGRFAM TIGR00613 reco: DNA repair protein RecO 7 229 7.2E-37 T 10-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 VF_2085 36be9d927a3860791d40b21d40b84fd0 238 SUPERFAMILY SSF50249 6 77 1.42E-13 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_2085 36be9d927a3860791d40b21d40b84fd0 238 Gene3D G3DSA:2.40.50.140 2 79 2.2E-31 T 10-10-2018 VF_2085 36be9d927a3860791d40b21d40b84fd0 238 Pfam PF02565 Recombination protein O C terminal 84 227 4.0E-24 T 10-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 VF_2085 36be9d927a3860791d40b21d40b84fd0 238 Pfam PF11967 Recombination protein O N terminal 6 77 6.0E-22 T 10-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal VF_0918 43b438dbbde8b09de108d1aa87b07443 833 SUPERFAMILY SSF56796 392 808 2.22E-116 T 10-10-2018 VF_0918 43b438dbbde8b09de108d1aa87b07443 833 PIRSF PIRSF000111 1 807 0.0 T 10-10-2018 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 VF_0918 43b438dbbde8b09de108d1aa87b07443 833 Gene3D G3DSA:3.40.605.10 1 388 2.4E-160 T 10-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VF_0918 43b438dbbde8b09de108d1aa87b07443 833 Pfam PF00465 Iron-containing alcohol dehydrogenase 400 790 2.6E-114 T 10-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 VF_0918 43b438dbbde8b09de108d1aa87b07443 833 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 573 601 - T 10-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VF_0918 43b438dbbde8b09de108d1aa87b07443 833 SUPERFAMILY SSF53720 3 396 3.67E-72 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VF_0918 43b438dbbde8b09de108d1aa87b07443 833 Gene3D G3DSA:3.40.50.1970 393 584 3.8E-58 T 10-10-2018 VF_0918 43b438dbbde8b09de108d1aa87b07443 833 Gene3D G3DSA:1.20.1090.10 585 806 5.5E-61 T 10-10-2018 VF_0918 43b438dbbde8b09de108d1aa87b07443 833 Pfam PF00171 Aldehyde dehydrogenase family 31 343 4.1E-20 T 10-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VF_0918 43b438dbbde8b09de108d1aa87b07443 833 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 661 681 - T 10-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VF_0918 43b438dbbde8b09de108d1aa87b07443 833 Gene3D G3DSA:3.40.309.10 160 347 2.4E-160 T 10-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VF_2300 f97b19f20ca9f65b02c76ccc34162a6b 242 PRINTS PR00160 Glutaredoxin signature 173 191 1.1E-14 T 10-10-2018 IPR014025 Glutaredoxin subgroup VF_2300 f97b19f20ca9f65b02c76ccc34162a6b 242 PRINTS PR00160 Glutaredoxin signature 228 241 1.1E-14 T 10-10-2018 IPR014025 Glutaredoxin subgroup VF_2300 f97b19f20ca9f65b02c76ccc34162a6b 242 PRINTS PR00160 Glutaredoxin signature 214 227 1.1E-14 T 10-10-2018 IPR014025 Glutaredoxin subgroup VF_2300 f97b19f20ca9f65b02c76ccc34162a6b 242 ProSitePatterns PS00195 Glutaredoxin active site. 175 191 - T 10-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 VF_2300 f97b19f20ca9f65b02c76ccc34162a6b 242 Gene3D G3DSA:3.40.30.10 4 165 8.0E-62 T 10-10-2018 VF_2300 f97b19f20ca9f65b02c76ccc34162a6b 242 TIGRFAM TIGR02190 GlrX-dom: glutaredoxin-family domain 164 242 3.5E-41 T 10-10-2018 IPR011906 Glutaredoxin domain KEGG: 00480+1.11.1.15 VF_2300 f97b19f20ca9f65b02c76ccc34162a6b 242 SUPERFAMILY SSF52833 2 240 1.14E-47 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_2300 f97b19f20ca9f65b02c76ccc34162a6b 242 Gene3D G3DSA:3.40.30.10 171 242 1.3E-23 T 10-10-2018 VF_2300 f97b19f20ca9f65b02c76ccc34162a6b 242 Pfam PF08534 Redoxin 5 160 1.8E-32 T 10-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 VF_2300 f97b19f20ca9f65b02c76ccc34162a6b 242 Pfam PF00462 Glutaredoxin 173 231 3.3E-18 T 10-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 VF_1869 fbc64dd20677372cc64494e93b6836ea 339 Gene3D G3DSA:2.10.70.40 226 277 6.1E-45 T 10-10-2018 VF_1869 fbc64dd20677372cc64494e93b6836ea 339 Pfam PF10135 Rod binding protein 60 109 2.1E-12 T 10-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal VF_1869 fbc64dd20677372cc64494e93b6836ea 339 Gene3D G3DSA:1.10.530.10 192 331 6.1E-45 T 10-10-2018 VF_1869 fbc64dd20677372cc64494e93b6836ea 339 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 198 334 2.8E-20 T 10-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 VF_1869 fbc64dd20677372cc64494e93b6836ea 339 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 17 334 8.7E-96 T 10-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 VF_1869 fbc64dd20677372cc64494e93b6836ea 339 SMART SM00047 173 336 5.2E-40 T 10-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 VF_A0130 c9cf6415829dc09fa575ca68cb831af9 153 Gene3D G3DSA:3.40.930.10 4 153 6.5E-40 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0130 c9cf6415829dc09fa575ca68cb831af9 153 SUPERFAMILY SSF55804 5 152 4.32E-31 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0130 c9cf6415829dc09fa575ca68cb831af9 153 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 57 73 - T 10-10-2018 IPR002178 PTS EIIA type-2 domain VF_A0130 c9cf6415829dc09fa575ca68cb831af9 153 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 20 152 4.7E-26 T 10-10-2018 IPR002178 PTS EIIA type-2 domain VF_A0479 fdff04712e5fe7a0450567c8543dc849 347 Gene3D G3DSA:2.40.30.170 264 299 2.7E-12 T 10-10-2018 VF_A0479 fdff04712e5fe7a0450567c8543dc849 347 Gene3D G3DSA:2.40.50.100 70 263 2.7E-12 T 10-10-2018 VF_A0479 fdff04712e5fe7a0450567c8543dc849 347 SUPERFAMILY SSF51230 214 258 7.98E-5 T 10-10-2018 IPR011053 Single hybrid motif VF_A0479 fdff04712e5fe7a0450567c8543dc849 347 Pfam PF13437 HlyD family secretion protein 229 306 7.2E-8 T 10-10-2018 VF_A0479 fdff04712e5fe7a0450567c8543dc849 347 Gene3D G3DSA:1.10.287.470 103 228 2.7E-12 T 10-10-2018 VF_A0485 47a73d2c7a813f5f21beb5642a1cf905 566 SUPERFAMILY SSF55120 360 563 1.6E-60 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_A0485 47a73d2c7a813f5f21beb5642a1cf905 566 Gene3D G3DSA:3.30.2350.10 354 565 3.0E-62 T 10-10-2018 VF_A0485 47a73d2c7a813f5f21beb5642a1cf905 566 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 410 424 - T 10-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_A0485 47a73d2c7a813f5f21beb5642a1cf905 566 Pfam PF00849 RNA pseudouridylate synthase 373 519 3.6E-30 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1397 d663efed7172e43903a17eefc81bd19e 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 431 2.8E-7 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1397 d663efed7172e43903a17eefc81bd19e 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 382 396 2.8E-7 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1397 d663efed7172e43903a17eefc81bd19e 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 350 451 4.5E-11 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1397 d663efed7172e43903a17eefc81bd19e 454 SUPERFAMILY SSF55874 313 451 1.22E-23 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1397 d663efed7172e43903a17eefc81bd19e 454 SMART SM00387 346 453 2.1E-17 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1397 d663efed7172e43903a17eefc81bd19e 454 SUPERFAMILY SSF47384 228 280 6.28E-5 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_1397 d663efed7172e43903a17eefc81bd19e 454 Gene3D G3DSA:1.10.287.130 191 298 3.7E-8 T 10-10-2018 VF_1397 d663efed7172e43903a17eefc81bd19e 454 Gene3D G3DSA:3.30.565.10 313 453 4.4E-23 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1834 7131656cb303c0b2bc70e3996b62f493 243 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 5 240 63.797 T 10-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 VF_1834 7131656cb303c0b2bc70e3996b62f493 243 SUPERFAMILY SSF88946 7 91 1.18E-23 T 10-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VF_1834 7131656cb303c0b2bc70e3996b62f493 243 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 20 238 6.3E-84 T 10-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 VF_1834 7131656cb303c0b2bc70e3996b62f493 243 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 237 4.0E-32 T 10-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VF_1834 7131656cb303c0b2bc70e3996b62f493 243 SUPERFAMILY SSF88659 153 240 1.1E-20 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_1834 7131656cb303c0b2bc70e3996b62f493 243 SUPERFAMILY SSF88659 92 161 7.41E-16 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_1834 7131656cb303c0b2bc70e3996b62f493 243 PRINTS PR00046 Major sigma-70 factor signature 46 59 2.5E-12 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_1834 7131656cb303c0b2bc70e3996b62f493 243 PRINTS PR00046 Major sigma-70 factor signature 190 202 2.5E-12 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_1834 7131656cb303c0b2bc70e3996b62f493 243 PRINTS PR00046 Major sigma-70 factor signature 207 222 2.5E-12 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_1834 7131656cb303c0b2bc70e3996b62f493 243 PRINTS PR00046 Major sigma-70 factor signature 222 233 2.5E-12 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_1834 7131656cb303c0b2bc70e3996b62f493 243 Gene3D G3DSA:1.20.140.160 90 239 2.0E-45 T 10-10-2018 VF_1834 7131656cb303c0b2bc70e3996b62f493 243 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 207 233 - T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_1834 7131656cb303c0b2bc70e3996b62f493 243 PIRSF PIRSF000770 5 240 3.5E-36 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_1834 7131656cb303c0b2bc70e3996b62f493 243 Pfam PF04539 Sigma-70 region 3 100 156 3.8E-11 T 10-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 VF_1834 7131656cb303c0b2bc70e3996b62f493 243 Pfam PF04542 Sigma-70 region 2 19 91 9.9E-16 T 10-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VF_1834 7131656cb303c0b2bc70e3996b62f493 243 Pfam PF04545 Sigma-70, region 4 186 235 3.9E-18 T 10-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VF_1834 7131656cb303c0b2bc70e3996b62f493 243 Gene3D G3DSA:1.10.1740.10 6 88 1.3E-27 T 10-10-2018 VF_0352 2fe5c027cdb1c046a6a945f4b0d13ffc 470 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 23 470 5.6E-154 T 10-10-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 VF_0352 2fe5c027cdb1c046a6a945f4b0d13ffc 470 Pfam PF13727 CoA-binding domain 62 244 1.3E-21 T 10-10-2018 VF_0352 2fe5c027cdb1c046a6a945f4b0d13ffc 470 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 20 470 3.8E-133 T 10-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase VF_0352 2fe5c027cdb1c046a6a945f4b0d13ffc 470 Pfam PF02397 Bacterial sugar transferase 280 462 3.0E-63 T 10-10-2018 IPR003362 Bacterial sugar transferase VF_0352 2fe5c027cdb1c046a6a945f4b0d13ffc 470 Gene3D G3DSA:3.40.50.720 145 264 2.2E-12 T 10-10-2018 VF_0352 2fe5c027cdb1c046a6a945f4b0d13ffc 470 SUPERFAMILY SSF51735 147 272 1.77E-5 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_2361 3b6f7fbb0b6fac47936498f6c80105eb 109 Pfam PF01022 Bacterial regulatory protein, arsR family 12 56 2.9E-11 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_2361 3b6f7fbb0b6fac47936498f6c80105eb 109 SUPERFAMILY SSF46785 5 85 5.96E-23 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_2361 3b6f7fbb0b6fac47936498f6c80105eb 109 Gene3D G3DSA:1.10.10.10 3 90 4.7E-24 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2361 3b6f7fbb0b6fac47936498f6c80105eb 109 SMART SM00418 5 87 2.1E-24 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_2361 3b6f7fbb0b6fac47936498f6c80105eb 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 8.5E-19 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_2361 3b6f7fbb0b6fac47936498f6c80105eb 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 8.5E-19 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_2361 3b6f7fbb0b6fac47936498f6c80105eb 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 8.5E-19 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_2361 3b6f7fbb0b6fac47936498f6c80105eb 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 27 38 8.5E-19 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_2074 e45b487b7e6d7c88eccba3d9a92848c2 94 Gene3D G3DSA:1.20.5.400 22 63 8.2E-9 T 10-10-2018 VF_2074 e45b487b7e6d7c88eccba3d9a92848c2 94 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 37.056 T 10-10-2018 IPR023081 Cell division protein FtsB VF_2074 e45b487b7e6d7c88eccba3d9a92848c2 94 Pfam PF04977 Septum formation initiator 12 89 8.1E-28 T 10-10-2018 IPR007060 Septum formation initiator FtsL/DivIC VF_2353 3e57f4eeb6d80fad1f90018131940edf 483 Gene3D G3DSA:1.10.40.30 421 470 8.6E-30 T 10-10-2018 VF_2353 3e57f4eeb6d80fad1f90018131940edf 483 Pfam PF00206 Lyase 23 355 5.3E-100 T 10-10-2018 IPR022761 Fumarate lyase, N-terminal VF_2353 3e57f4eeb6d80fad1f90018131940edf 483 SUPERFAMILY SSF48557 14 468 2.21E-140 T 10-10-2018 IPR008948 L-Aspartase-like GO:0003824 VF_2353 3e57f4eeb6d80fad1f90018131940edf 483 Gene3D G3DSA:1.20.200.10 153 420 1.5E-111 T 10-10-2018 VF_2353 3e57f4eeb6d80fad1f90018131940edf 483 PRINTS PR00149 Fumarate lyase superfamily signature 284 311 5.2E-25 T 10-10-2018 IPR000362 Fumarate lyase family VF_2353 3e57f4eeb6d80fad1f90018131940edf 483 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 5.2E-25 T 10-10-2018 IPR000362 Fumarate lyase family VF_2353 3e57f4eeb6d80fad1f90018131940edf 483 PRINTS PR00149 Fumarate lyase superfamily signature 330 346 5.2E-25 T 10-10-2018 IPR000362 Fumarate lyase family VF_2353 3e57f4eeb6d80fad1f90018131940edf 483 PRINTS PR00149 Fumarate lyase superfamily signature 193 211 5.2E-25 T 10-10-2018 IPR000362 Fumarate lyase family VF_2353 3e57f4eeb6d80fad1f90018131940edf 483 Pfam PF10415 Fumarase C C-terminus 421 474 9.5E-18 T 10-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VF_2353 3e57f4eeb6d80fad1f90018131940edf 483 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 16 482 2.8E-255 T 10-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 VF_2353 3e57f4eeb6d80fad1f90018131940edf 483 ProSitePatterns PS00163 Fumarate lyases signature. 330 339 - T 10-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 VF_2353 3e57f4eeb6d80fad1f90018131940edf 483 Gene3D G3DSA:1.10.275.10 16 152 2.2E-58 T 10-10-2018 IPR024083 Fumarase/histidase, N-terminal VF_1930 ec649e54c0cc9675c114934e708613c3 277 SUPERFAMILY SSF56235 2 253 1.97E-51 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_1930 ec649e54c0cc9675c114934e708613c3 277 Gene3D G3DSA:3.60.20.10 1 258 2.4E-100 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_1930 ec649e54c0cc9675c114934e708613c3 277 Pfam PF13230 Glutamine amidotransferases class-II 1 261 1.2E-113 T 10-10-2018 IPR026869 Putative glutamine amidotransferase type 2 VF_A0220 72bef79919c0ce22247f952297eb16eb 440 Pfam PF04972 BON domain 100 144 2.1E-7 T 10-10-2018 IPR007055 BON domain VF_A0220 72bef79919c0ce22247f952297eb16eb 440 Pfam PF13629 Pilus formation protein N terminal region 26 93 1.2E-17 T 10-10-2018 IPR032789 Pilus formation protein, N-terminal VF_A0220 72bef79919c0ce22247f952297eb16eb 440 PRINTS PR00811 Bacterial general secretion pathway protein D signature 357 375 4.7E-7 T 10-10-2018 IPR001775 GspD/PilQ family VF_A0220 72bef79919c0ce22247f952297eb16eb 440 PRINTS PR00811 Bacterial general secretion pathway protein D signature 187 197 4.7E-7 T 10-10-2018 IPR001775 GspD/PilQ family VF_A0220 72bef79919c0ce22247f952297eb16eb 440 Pfam PF00263 Bacterial type II and III secretion system protein 238 392 1.5E-39 T 10-10-2018 IPR004846 Type II/III secretion system GO:0009306 VF_1966 a341f9c8f6e799bef1e4c19210b77536 316 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 106 282 3.2E-55 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VF_1966 a341f9c8f6e799bef1e4c19210b77536 316 Gene3D G3DSA:1.20.1640.10 104 298 4.5E-13 T 10-10-2018 VF_1966 a341f9c8f6e799bef1e4c19210b77536 316 Pfam PF02355 Protein export membrane protein 111 292 5.8E-69 T 10-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VF_1966 a341f9c8f6e799bef1e4c19210b77536 316 PRINTS PR01755 Bacterial translocase SecF protein signature 233 248 2.3E-31 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VF_1966 a341f9c8f6e799bef1e4c19210b77536 316 PRINTS PR01755 Bacterial translocase SecF protein signature 38 53 2.3E-31 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VF_1966 a341f9c8f6e799bef1e4c19210b77536 316 PRINTS PR01755 Bacterial translocase SecF protein signature 153 167 2.3E-31 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VF_1966 a341f9c8f6e799bef1e4c19210b77536 316 PRINTS PR01755 Bacterial translocase SecF protein signature 201 219 2.3E-31 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VF_1966 a341f9c8f6e799bef1e4c19210b77536 316 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 39 285 9.7E-85 T 10-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 VF_1966 a341f9c8f6e799bef1e4c19210b77536 316 Pfam PF07549 SecD/SecF GG Motif 35 60 9.2E-11 T 10-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site VF_1966 a341f9c8f6e799bef1e4c19210b77536 316 SUPERFAMILY SSF82866 74 293 4.05E-41 T 10-10-2018 VF_1966 a341f9c8f6e799bef1e4c19210b77536 316 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 11 296 29.142 T 10-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 VF_1196 dc16fbe12b10f3926c3c4818c7ba8554 304 Pfam PF13084 Domain of unknown function (DUF3943) 141 250 5.9E-38 T 10-10-2018 IPR025079 Domain of unknown function DUF3943 VF_A0048 36b07f9da10ef62a5072fbe3594dd6e8 150 Gene3D G3DSA:2.160.20.100 20 141 1.2E-27 T 10-10-2018 VF_A0048 36b07f9da10ef62a5072fbe3594dd6e8 150 SUPERFAMILY SSF141571 27 131 2.22E-27 T 10-10-2018 VF_A0048 36b07f9da10ef62a5072fbe3594dd6e8 150 Pfam PF00805 Pentapeptide repeats (8 copies) 89 122 6.2E-9 T 10-10-2018 IPR001646 Pentapeptide repeat VF_A0048 36b07f9da10ef62a5072fbe3594dd6e8 150 Pfam PF00805 Pentapeptide repeats (8 copies) 49 88 1.1E-11 T 10-10-2018 IPR001646 Pentapeptide repeat VF_0152 ed40e724dd73078a9fcf737e0edc8dc0 313 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 312 1.6E-125 T 10-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 VF_0152 ed40e724dd73078a9fcf737e0edc8dc0 313 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 241 1.5E-43 T 10-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 VF_0152 ed40e724dd73078a9fcf737e0edc8dc0 313 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 313 46.026 T 10-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 VF_0152 ed40e724dd73078a9fcf737e0edc8dc0 313 Gene3D G3DSA:3.40.50.720 3 307 1.1E-113 T 10-10-2018 VF_0152 ed40e724dd73078a9fcf737e0edc8dc0 313 SUPERFAMILY SSF51735 1 308 2.46E-56 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0152 ed40e724dd73078a9fcf737e0edc8dc0 313 Gene3D G3DSA:3.90.25.10 173 295 1.1E-113 T 10-10-2018 VF_1871 bc285cb40da411e0919b6b099a37653d 263 Pfam PF02107 Flagellar L-ring protein 84 261 1.8E-57 T 10-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VF_1871 bc285cb40da411e0919b6b099a37653d 263 PRINTS PR01008 Flagellar L-ring protein signature 179 194 8.1E-22 T 10-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VF_1871 bc285cb40da411e0919b6b099a37653d 263 PRINTS PR01008 Flagellar L-ring protein signature 106 118 8.1E-22 T 10-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VF_1871 bc285cb40da411e0919b6b099a37653d 263 PRINTS PR01008 Flagellar L-ring protein signature 205 221 8.1E-22 T 10-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VF_1871 bc285cb40da411e0919b6b099a37653d 263 PRINTS PR01008 Flagellar L-ring protein signature 242 256 8.1E-22 T 10-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VF_1871 bc285cb40da411e0919b6b099a37653d 263 PRINTS PR01008 Flagellar L-ring protein signature 226 240 8.1E-22 T 10-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VF_1871 bc285cb40da411e0919b6b099a37653d 263 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 263 27.994 T 10-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VF_0590 d2c1099c8c7610b96b2a1c5c720a0189 410 PIRSF PIRSF005572 28 410 4.5E-53 T 10-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 VF_0590 d2c1099c8c7610b96b2a1c5c720a0189 410 Gene3D G3DSA:3.90.1150.10 14 403 8.2E-161 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_0590 d2c1099c8c7610b96b2a1c5c720a0189 410 Pfam PF00266 Aminotransferase class-V 32 399 4.4E-144 T 10-10-2018 IPR000192 Aminotransferase class V domain VF_0590 d2c1099c8c7610b96b2a1c5c720a0189 410 Gene3D G3DSA:3.40.640.10 42 302 8.2E-161 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_0590 d2c1099c8c7610b96b2a1c5c720a0189 410 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 14 409 1.7E-162 T 10-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 VF_0590 d2c1099c8c7610b96b2a1c5c720a0189 410 SUPERFAMILY SSF53383 9 407 2.1E-119 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_1572 28caa8ff8bea8cdd23d28bf70f87882e 337 Gene3D G3DSA:3.40.50.2300 161 325 1.8E-92 T 10-10-2018 VF_1572 28caa8ff8bea8cdd23d28bf70f87882e 337 SUPERFAMILY SSF53822 60 334 3.73E-93 T 10-10-2018 IPR028082 Periplasmic binding protein-like I VF_1572 28caa8ff8bea8cdd23d28bf70f87882e 337 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 10-10-2018 VF_1572 28caa8ff8bea8cdd23d28bf70f87882e 337 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.3E-18 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_1572 28caa8ff8bea8cdd23d28bf70f87882e 337 Hamap MF_01277 HTH-type transcriptional repressor PurR [purR]. 1 336 65.299 T 10-10-2018 IPR023588 Transcription regulator HTH, PurR GO:0006355 VF_1572 28caa8ff8bea8cdd23d28bf70f87882e 337 Gene3D G3DSA:3.40.50.2300 71 324 1.8E-92 T 10-10-2018 VF_1572 28caa8ff8bea8cdd23d28bf70f87882e 337 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.0E-5 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_1572 28caa8ff8bea8cdd23d28bf70f87882e 337 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.0E-5 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_1572 28caa8ff8bea8cdd23d28bf70f87882e 337 SUPERFAMILY SSF47413 1 59 1.59E-16 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_1572 28caa8ff8bea8cdd23d28bf70f87882e 337 Gene3D G3DSA:1.10.260.40 3 59 1.9E-24 T 10-10-2018 VF_1572 28caa8ff8bea8cdd23d28bf70f87882e 337 SMART SM00354 1 71 4.5E-35 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_1572 28caa8ff8bea8cdd23d28bf70f87882e 337 Pfam PF13377 Periplasmic binding protein-like domain 170 332 9.7E-43 T 10-10-2018 VF_0432 3492eb9af9885dbf11d368c603019ec6 366 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 342 1.5E-126 T 10-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 VF_0432 3492eb9af9885dbf11d368c603019ec6 366 SUPERFAMILY SSF52540 3 334 5.87E-69 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0432 3492eb9af9885dbf11d368c603019ec6 366 Pfam PF00437 Type II/IV secretion system protein 12 268 9.6E-39 T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_0432 3492eb9af9885dbf11d368c603019ec6 366 Gene3D G3DSA:3.40.50.300 99 354 2.3E-88 T 10-10-2018 VF_0432 3492eb9af9885dbf11d368c603019ec6 366 Gene3D G3DSA:3.30.450.90 1 97 1.1E-22 T 10-10-2018 VF_0162 6875567bdf32d4ede1a2be87c3edc919 383 Gene3D G3DSA:1.20.5.70 350 383 1.6E-19 T 10-10-2018 VF_0162 6875567bdf32d4ede1a2be87c3edc919 383 Gene3D G3DSA:3.30.1950.10 92 173 2.3E-121 T 10-10-2018 VF_0162 6875567bdf32d4ede1a2be87c3edc919 383 Pfam PF10531 SLBB domain 177 224 8.9E-8 T 10-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_0162 6875567bdf32d4ede1a2be87c3edc919 383 Pfam PF10531 SLBB domain 260 306 9.1E-6 T 10-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_0162 6875567bdf32d4ede1a2be87c3edc919 383 Pfam PF02563 Polysaccharide biosynthesis/export protein 85 169 7.3E-28 T 10-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 VF_0162 6875567bdf32d4ede1a2be87c3edc919 383 Gene3D G3DSA:3.10.560.10 58 347 2.3E-121 T 10-10-2018 VF_0162 6875567bdf32d4ede1a2be87c3edc919 383 Gene3D G3DSA:3.10.560.10 70 258 2.3E-121 T 10-10-2018 VF_0475 22cdb4f38ea32ddc73b061db11052f60 322 Pfam PF13609 Gram-negative porin 8 294 1.9E-31 T 10-10-2018 VF_0475 22cdb4f38ea32ddc73b061db11052f60 322 SUPERFAMILY SSF56935 23 322 1.98E-54 T 10-10-2018 VF_0475 22cdb4f38ea32ddc73b061db11052f60 322 Gene3D G3DSA:2.40.160.10 23 322 5.1E-60 T 10-10-2018 IPR023614 Porin domain superfamily VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 71 731 1.6E-259 T 10-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 SUPERFAMILY SSF50249 145 242 9.94E-16 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 TIGRFAM TIGR02063 RNase_R: ribonuclease R 23 732 4.4E-274 T 10-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 SMART SM00357 157 218 1.6 T 10-10-2018 IPR011129 Cold shock domain GO:0003676 VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 SMART SM00357 90 152 3.1E-14 T 10-10-2018 IPR011129 Cold shock domain GO:0003676 VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 Gene3D G3DSA:2.40.50.140 78 154 3.5E-12 T 10-10-2018 VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 Gene3D G3DSA:2.40.50.140 155 221 4.3E-5 T 10-10-2018 VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 SUPERFAMILY SSF50249 651 732 1.14E-21 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 Pfam PF00773 RNB domain 267 594 2.8E-105 T 10-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 ProSitePatterns PS01175 Ribonuclease II family signature. 562 586 - T 10-10-2018 IPR022966 Ribonuclease II/R, conserved site VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 Pfam PF08206 Ribonuclease B OB domain 91 151 2.3E-20 T 10-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 Gene3D G3DSA:2.40.50.140 653 761 4.8E-25 T 10-10-2018 VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 Hamap MF_01895 Ribonuclease R [rnr]. 42 733 58.324 T 10-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 SMART SM00955 267 595 1.8E-184 T 10-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 SUPERFAMILY SSF50249 71 154 2.71E-17 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 SMART SM00316 650 733 1.6E-15 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 SUPERFAMILY SSF50249 227 650 1.83E-144 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 Pfam PF08461 Ribonuclease R winged-helix domain 27 89 1.8E-11 T 10-10-2018 IPR013668 Ribonuclease R winged-helix domain VF_2314 eb579404ad23d51d1ed2f25327e42b58 835 Pfam PF00575 S1 RNA binding domain 650 732 3.1E-15 T 10-10-2018 IPR003029 S1 domain GO:0003676 VF_A1026 cb07bc6e087d6b43226c23ae09c0a433 500 Pfam PF00158 Sigma-54 interaction domain 143 309 2.3E-66 T 10-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VF_A1026 cb07bc6e087d6b43226c23ae09c0a433 500 Gene3D G3DSA:3.40.50.300 132 313 5.3E-63 T 10-10-2018 VF_A1026 cb07bc6e087d6b43226c23ae09c0a433 500 SMART SM00448 3 114 2.5E-26 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A1026 cb07bc6e087d6b43226c23ae09c0a433 500 Pfam PF02954 Bacterial regulatory protein, Fis family 453 489 1.1E-9 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_A1026 cb07bc6e087d6b43226c23ae09c0a433 500 Gene3D G3DSA:1.10.8.60 314 394 1.6E-22 T 10-10-2018 VF_A1026 cb07bc6e087d6b43226c23ae09c0a433 500 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 228 243 - T 10-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VF_A1026 cb07bc6e087d6b43226c23ae09c0a433 500 Pfam PF00072 Response regulator receiver domain 5 114 4.2E-23 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A1026 cb07bc6e087d6b43226c23ae09c0a433 500 Gene3D G3DSA:1.10.10.60 447 490 4.0E-11 T 10-10-2018 VF_A1026 cb07bc6e087d6b43226c23ae09c0a433 500 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 355 364 - T 10-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VF_A1026 cb07bc6e087d6b43226c23ae09c0a433 500 SUPERFAMILY SSF46689 446 493 1.03E-8 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A1026 cb07bc6e087d6b43226c23ae09c0a433 500 Gene3D G3DSA:3.40.50.2300 2 131 2.1E-29 T 10-10-2018 VF_A1026 cb07bc6e087d6b43226c23ae09c0a433 500 SUPERFAMILY SSF52540 142 385 6.63E-68 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A1026 cb07bc6e087d6b43226c23ae09c0a433 500 SUPERFAMILY SSF52172 4 186 2.28E-37 T 10-10-2018 IPR011006 CheY-like superfamily VF_A1026 cb07bc6e087d6b43226c23ae09c0a433 500 SMART SM00382 162 304 1.8E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2359 2fc8761765593ebfac9f5f0b063b0e80 165 SUPERFAMILY SSF52799 17 161 2.58E-28 T 10-10-2018 IPR029021 Protein-tyrosine phosphatase-like VF_2359 2fc8761765593ebfac9f5f0b063b0e80 165 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 111 121 - T 10-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 VF_2359 2fc8761765593ebfac9f5f0b063b0e80 165 Pfam PF05706 Cyclin-dependent kinase inhibitor 3 (CDKN3) 32 132 6.9E-6 T 10-10-2018 IPR022778 CDKN3 domain GO:0004721|GO:0004725 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VF_2359 2fc8761765593ebfac9f5f0b063b0e80 165 Gene3D G3DSA:3.90.190.10 5 165 4.0E-28 T 10-10-2018 IPR029021 Protein-tyrosine phosphatase-like VF_0231 d4462d2613e0403e4a888e303aa103f6 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 10-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0231 d4462d2613e0403e4a888e303aa103f6 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.938 T 10-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 VF_0231 d4462d2613e0403e4a888e303aa103f6 156 PIRSF PIRSF002122 3 156 6.3E-64 T 10-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 VF_0231 d4462d2613e0403e4a888e303aa103f6 156 SUPERFAMILY SSF47973 6 149 2.22E-60 T 10-10-2018 IPR036823 Ribosomal protein S7 domain superfamily VF_0231 d4462d2613e0403e4a888e303aa103f6 156 Gene3D G3DSA:1.10.455.10 2 155 9.2E-65 T 10-10-2018 IPR036823 Ribosomal protein S7 domain superfamily VF_0231 d4462d2613e0403e4a888e303aa103f6 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 8.3E-67 T 10-10-2018 IPR023798 Ribosomal protein S7 domain VF_0231 d4462d2613e0403e4a888e303aa103f6 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.5E-71 T 10-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 VF_1156 9994117c48360e27b5aec486ca5cc60c 469 Gene3D G3DSA:3.20.20.140 87 376 7.4E-146 T 10-10-2018 VF_1156 9994117c48360e27b5aec486ca5cc60c 469 SUPERFAMILY SSF51338 29 455 1.52E-35 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_1156 9994117c48360e27b5aec486ca5cc60c 469 Gene3D G3DSA:2.30.40.10 37 449 7.4E-146 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_1156 9994117c48360e27b5aec486ca5cc60c 469 Pfam PF01979 Amidohydrolase family 83 431 7.0E-70 T 10-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VF_1156 9994117c48360e27b5aec486ca5cc60c 469 SUPERFAMILY SSF51556 86 384 1.43E-82 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_0778 dd720b8187db968fa780c5e2b04ff76b 552 ProSitePatterns PS00785 5'-nucleotidase signature 1. 37 49 - T 10-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0778 dd720b8187db968fa780c5e2b04ff76b 552 SUPERFAMILY SSF55816 365 542 3.01E-52 T 10-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0778 dd720b8187db968fa780c5e2b04ff76b 552 Pfam PF02872 5'-nucleotidase, C-terminal domain 365 511 1.2E-34 T 10-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0778 dd720b8187db968fa780c5e2b04ff76b 552 Gene3D G3DSA:3.60.21.10 29 364 1.4E-124 T 10-10-2018 IPR029052 Metallo-dependent phosphatase-like VF_0778 dd720b8187db968fa780c5e2b04ff76b 552 Pfam PF00149 Calcineurin-like phosphoesterase 38 258 1.3E-18 T 10-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VF_0778 dd720b8187db968fa780c5e2b04ff76b 552 SUPERFAMILY SSF56300 30 363 5.82E-94 T 10-10-2018 VF_0778 dd720b8187db968fa780c5e2b04ff76b 552 PRINTS PR01607 Apyrase family signature 210 227 1.5E-53 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0778 dd720b8187db968fa780c5e2b04ff76b 552 PRINTS PR01607 Apyrase family signature 419 442 1.5E-53 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0778 dd720b8187db968fa780c5e2b04ff76b 552 PRINTS PR01607 Apyrase family signature 486 505 1.5E-53 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0778 dd720b8187db968fa780c5e2b04ff76b 552 PRINTS PR01607 Apyrase family signature 35 53 1.5E-53 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0778 dd720b8187db968fa780c5e2b04ff76b 552 PRINTS PR01607 Apyrase family signature 241 264 1.5E-53 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0778 dd720b8187db968fa780c5e2b04ff76b 552 PRINTS PR01607 Apyrase family signature 286 306 1.5E-53 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0778 dd720b8187db968fa780c5e2b04ff76b 552 ProSitePatterns PS00786 5'-nucleotidase signature 2. 112 123 - T 10-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_0778 dd720b8187db968fa780c5e2b04ff76b 552 Gene3D G3DSA:3.90.780.10 365 551 2.0E-58 T 10-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_1763 98c2cb41b59824de1133554d3fa07cae 230 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 15 84 1.2E-19 T 10-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 VF_1763 98c2cb41b59824de1133554d3fa07cae 230 PIRSF PIRSF037208 1 230 1.7E-79 T 10-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 VF_1763 98c2cb41b59824de1133554d3fa07cae 230 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 4 229 34.94 T 10-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 VF_1763 98c2cb41b59824de1133554d3fa07cae 230 SUPERFAMILY SSF55729 77 225 4.61E-16 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_1763 98c2cb41b59824de1133554d3fa07cae 230 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 105 223 8.0E-31 T 10-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 VF_A1025 8b75c63cd3546de84116530622a68425 766 SMART SM00448 499 613 8.1E-39 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A1025 8b75c63cd3546de84116530622a68425 766 Gene3D G3DSA:1.10.287.130 207 303 4.0E-28 T 10-10-2018 VF_A1025 8b75c63cd3546de84116530622a68425 766 Gene3D G3DSA:1.20.120.160 644 758 2.8E-17 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_A1025 8b75c63cd3546de84116530622a68425 766 SUPERFAMILY SSF47226 647 759 1.23E-18 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_A1025 8b75c63cd3546de84116530622a68425 766 SMART SM00304 173 225 1.4E-4 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A1025 8b75c63cd3546de84116530622a68425 766 SUPERFAMILY SSF47384 225 305 3.34E-21 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_A1025 8b75c63cd3546de84116530622a68425 766 SUPERFAMILY SSF52172 497 626 4.7E-39 T 10-10-2018 IPR011006 CheY-like superfamily VF_A1025 8b75c63cd3546de84116530622a68425 766 SMART SM00388 240 305 2.7E-22 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A1025 8b75c63cd3546de84116530622a68425 766 Pfam PF00072 Response regulator receiver domain 501 612 1.1E-29 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A1025 8b75c63cd3546de84116530622a68425 766 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 304 1.3E-19 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A1025 8b75c63cd3546de84116530622a68425 766 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 464 1.4E-11 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A1025 8b75c63cd3546de84116530622a68425 766 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 406 1.4E-11 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A1025 8b75c63cd3546de84116530622a68425 766 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 420 1.4E-11 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A1025 8b75c63cd3546de84116530622a68425 766 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 445 1.4E-11 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A1025 8b75c63cd3546de84116530622a68425 766 SUPERFAMILY SSF55874 294 463 2.36E-42 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A1025 8b75c63cd3546de84116530622a68425 766 Gene3D G3DSA:3.30.565.10 306 471 5.9E-48 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A1025 8b75c63cd3546de84116530622a68425 766 SMART SM00387 352 467 1.0E-32 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A1025 8b75c63cd3546de84116530622a68425 766 Gene3D G3DSA:3.40.50.2300 496 618 2.8E-41 T 10-10-2018 VF_A1025 8b75c63cd3546de84116530622a68425 766 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 466 9.7E-27 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A1025 8b75c63cd3546de84116530622a68425 766 Pfam PF01627 Hpt domain 673 730 1.2E-6 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VF_A0669 d22fa0e38e28dc5638ed61ba0dee3189 113 Gene3D G3DSA:1.10.10.10 8 113 5.2E-10 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0669 d22fa0e38e28dc5638ed61ba0dee3189 113 SUPERFAMILY SSF46785 40 111 2.39E-8 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0114 9abb2228c6f01de9538f7048ec9be2dc 239 SUPERFAMILY SSF46894 132 234 2.01E-26 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_0114 9abb2228c6f01de9538f7048ec9be2dc 239 Pfam PF00072 Response regulator receiver domain 7 117 1.1E-28 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_0114 9abb2228c6f01de9538f7048ec9be2dc 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 5.6E-21 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_0114 9abb2228c6f01de9538f7048ec9be2dc 239 SUPERFAMILY SSF52172 3 126 2.7E-41 T 10-10-2018 IPR011006 CheY-like superfamily VF_0114 9abb2228c6f01de9538f7048ec9be2dc 239 Gene3D G3DSA:3.40.50.2300 1 125 1.3E-39 T 10-10-2018 VF_0114 9abb2228c6f01de9538f7048ec9be2dc 239 Gene3D G3DSA:1.10.10.10 130 239 8.1E-38 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0114 9abb2228c6f01de9538f7048ec9be2dc 239 SMART SM00862 156 232 7.4E-19 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_0114 9abb2228c6f01de9538f7048ec9be2dc 239 SMART SM00448 5 116 1.7E-43 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0395 6eebf53ff3628e35a7876b5016aded7d 544 Pfam PF11398 Protein of unknown function (DUF2813) 1 370 1.1E-151 T 10-10-2018 IPR022602 Protein of unknown function DUF2813 VF_A0395 6eebf53ff3628e35a7876b5016aded7d 544 SUPERFAMILY SSF52540 1 351 6.82E-15 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2106 2d5ff22fb9d5399b0b1ac76dafce74a0 409 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 10-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 VF_2106 2d5ff22fb9d5399b0b1ac76dafce74a0 409 Gene3D G3DSA:3.30.70.260 328 408 5.7E-33 T 10-10-2018 VF_2106 2d5ff22fb9d5399b0b1ac76dafce74a0 409 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 10-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VF_2106 2d5ff22fb9d5399b0b1ac76dafce74a0 409 SUPERFAMILY SSF52283 7 136 3.59E-50 T 10-10-2018 VF_2106 2d5ff22fb9d5399b0b1ac76dafce74a0 409 SUPERFAMILY SSF51735 108 295 3.6E-58 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_2106 2d5ff22fb9d5399b0b1ac76dafce74a0 409 SUPERFAMILY SSF55021 333 408 5.24E-18 T 10-10-2018 VF_2106 2d5ff22fb9d5399b0b1ac76dafce74a0 409 Gene3D G3DSA:3.40.50.720 109 297 1.4E-109 T 10-10-2018 VF_2106 2d5ff22fb9d5399b0b1ac76dafce74a0 409 Gene3D G3DSA:3.40.50.720 14 312 1.4E-109 T 10-10-2018 VF_2106 2d5ff22fb9d5399b0b1ac76dafce74a0 409 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 13 326 9.9E-40 T 10-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 VF_2106 2d5ff22fb9d5399b0b1ac76dafce74a0 409 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 118 294 2.2E-51 T 10-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VF_A1152 612e550d21215441aaa88bcdaf18bb72 372 Gene3D G3DSA:2.40.420.20 277 368 5.6E-21 T 10-10-2018 VF_A1152 612e550d21215441aaa88bcdaf18bb72 372 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 54 283 6.3E-15 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VF_A1152 612e550d21215441aaa88bcdaf18bb72 372 Gene3D G3DSA:1.10.287.470 93 166 2.7E-76 T 10-10-2018 VF_A1152 612e550d21215441aaa88bcdaf18bb72 372 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 367 1.0E-84 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VF_A1152 612e550d21215441aaa88bcdaf18bb72 372 Gene3D G3DSA:2.40.50.100 58 201 2.7E-76 T 10-10-2018 VF_A1152 612e550d21215441aaa88bcdaf18bb72 372 SUPERFAMILY SSF111369 49 291 5.49E-64 T 10-10-2018 VF_A1152 612e550d21215441aaa88bcdaf18bb72 372 Gene3D G3DSA:2.40.30.170 52 276 2.7E-76 T 10-10-2018 VF_A0009 a1a978cf26945921b643426048dd13e1 482 ProSitePatterns PS00438 Catalase proximal active site signature. 42 58 - T 10-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VF_A0009 a1a978cf26945921b643426048dd13e1 482 Pfam PF06628 Catalase-related immune-responsive 413 473 8.1E-21 T 10-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VF_A0009 a1a978cf26945921b643426048dd13e1 482 PRINTS PR00067 Catalase signature 19 42 1.0E-71 T 10-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VF_A0009 a1a978cf26945921b643426048dd13e1 482 PRINTS PR00067 Catalase signature 82 100 1.0E-71 T 10-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VF_A0009 a1a978cf26945921b643426048dd13e1 482 PRINTS PR00067 Catalase signature 287 314 1.0E-71 T 10-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VF_A0009 a1a978cf26945921b643426048dd13e1 482 PRINTS PR00067 Catalase signature 122 140 1.0E-71 T 10-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VF_A0009 a1a978cf26945921b643426048dd13e1 482 PRINTS PR00067 Catalase signature 103 120 1.0E-71 T 10-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VF_A0009 a1a978cf26945921b643426048dd13e1 482 PRINTS PR00067 Catalase signature 319 345 1.0E-71 T 10-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VF_A0009 a1a978cf26945921b643426048dd13e1 482 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 332 340 - T 10-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VF_A0009 a1a978cf26945921b643426048dd13e1 482 PIRSF PIRSF038928 1 480 1.9E-223 T 10-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VF_A0009 a1a978cf26945921b643426048dd13e1 482 SMART SM01060 6 390 4.1E-289 T 10-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VF_A0009 a1a978cf26945921b643426048dd13e1 482 Gene3D G3DSA:2.40.180.10 1 482 6.5E-239 T 10-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 VF_A0009 a1a978cf26945921b643426048dd13e1 482 SUPERFAMILY SSF56634 4 480 4.19E-216 T 10-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VF_A0009 a1a978cf26945921b643426048dd13e1 482 Pfam PF00199 Catalase 6 385 8.5E-191 T 10-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VF_2482 e633965b55c077586a4efc00bf0180d2 265 SUPERFAMILY SSF56784 1 264 1.1E-66 T 10-10-2018 IPR036412 HAD-like superfamily VF_2482 e633965b55c077586a4efc00bf0180d2 265 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 259 5.5E-66 T 10-10-2018 VF_2482 e633965b55c077586a4efc00bf0180d2 265 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 10-10-2018 VF_2482 e633965b55c077586a4efc00bf0180d2 265 Gene3D G3DSA:3.40.50.1000 5 255 8.6E-72 T 10-10-2018 IPR023214 HAD superfamily VF_2482 e633965b55c077586a4efc00bf0180d2 265 ProSitePatterns PS01229 Hypothetical cof family signature 2. 211 233 - T 10-10-2018 VF_2482 e633965b55c077586a4efc00bf0180d2 265 Gene3D G3DSA:3.30.1240.10 82 186 8.6E-72 T 10-10-2018 VF_2482 e633965b55c077586a4efc00bf0180d2 265 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 259 3.5E-62 T 10-10-2018 IPR000150 Cof family GO:0016787 VF_2482 e633965b55c077586a4efc00bf0180d2 265 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 230 1.8E-29 T 10-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 VF_0594 c0cfce03648cce948a923b8be3b39aa7 259 Gene3D G3DSA:1.10.150.20 167 255 3.7E-20 T 10-10-2018 VF_0594 c0cfce03648cce948a923b8be3b39aa7 259 SMART SM00475 3 254 4.1E-62 T 10-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 VF_0594 c0cfce03648cce948a923b8be3b39aa7 259 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 166 255 3.1E-20 T 10-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 VF_0594 c0cfce03648cce948a923b8be3b39aa7 259 SUPERFAMILY SSF88723 4 164 5.23E-40 T 10-10-2018 IPR029060 PIN-like domain superfamily VF_0594 c0cfce03648cce948a923b8be3b39aa7 259 Hamap MF_01192 Flap endonuclease Xni [xni]. 2 255 44.72 T 10-10-2018 IPR022895 Flap endonuclease Xni GO:0048256 VF_0594 c0cfce03648cce948a923b8be3b39aa7 259 SUPERFAMILY SSF47807 164 254 2.09E-19 T 10-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily VF_0594 c0cfce03648cce948a923b8be3b39aa7 259 Gene3D G3DSA:3.40.50.1010 1 166 4.1E-51 T 10-10-2018 VF_0594 c0cfce03648cce948a923b8be3b39aa7 259 SMART SM00279 167 202 9.2E-10 T 10-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 VF_0594 c0cfce03648cce948a923b8be3b39aa7 259 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 163 5.8E-33 T 10-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 VF_2191 b09b24b5a1d0afa74e3f3ba40705dc1e 69 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 8 64 18.733 T 10-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 VF_2191 b09b24b5a1d0afa74e3f3ba40705dc1e 69 SUPERFAMILY SSF57716 8 67 1.13E-21 T 10-10-2018 VF_2191 b09b24b5a1d0afa74e3f3ba40705dc1e 69 Pfam PF03884 DNA gyrase inhibitor YacG 12 62 1.4E-24 T 10-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 VF_2191 b09b24b5a1d0afa74e3f3ba40705dc1e 69 Gene3D G3DSA:3.30.50.10 6 69 4.2E-24 T 10-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 VF_2405 f4ed6dec2bcbf94687456f774951682e 278 Gene3D G3DSA:3.40.50.10610 128 277 4.0E-55 T 10-10-2018 VF_2405 f4ed6dec2bcbf94687456f774951682e 278 Gene3D G3DSA:3.40.50.10610 31 127 4.8E-33 T 10-10-2018 VF_2405 f4ed6dec2bcbf94687456f774951682e 278 Pfam PF03783 Curli production assembly/transport component CsgG 44 257 2.8E-82 T 10-10-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 VF_A0528 ba3ffd1ed89f5d2bbfc43a5150b1ea13 547 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 355 510 4.3E-38 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0528 ba3ffd1ed89f5d2bbfc43a5150b1ea13 547 SMART SM00283 285 546 4.0E-57 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0528 ba3ffd1ed89f5d2bbfc43a5150b1ea13 547 SUPERFAMILY SSF58104 291 547 2.75E-62 T 10-10-2018 VF_A0528 ba3ffd1ed89f5d2bbfc43a5150b1ea13 547 Gene3D G3DSA:1.10.287.950 227 547 5.3E-60 T 10-10-2018 VF_A0528 ba3ffd1ed89f5d2bbfc43a5150b1ea13 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 383 410 1.5E-20 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0528 ba3ffd1ed89f5d2bbfc43a5150b1ea13 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 96 111 1.5E-20 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0528 ba3ffd1ed89f5d2bbfc43a5150b1ea13 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 412 441 1.5E-20 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0528 ba3ffd1ed89f5d2bbfc43a5150b1ea13 547 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 176 1.6E-10 T 10-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VF_A0513 e8f8ffb0537c9e843f10a97377ed8acb 60 SUPERFAMILY SSF56349 2 59 1.8E-10 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VF_0742 2765f6c01caa0150a2884e28b15a853e 321 SMART SM00729 84 293 2.8E-20 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VF_0742 2765f6c01caa0150a2884e28b15a853e 321 Hamap MF_00206 Lipoyl synthase [lipA]. 1 321 155.629 T 10-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VF_0742 2765f6c01caa0150a2884e28b15a853e 321 PIRSF PIRSF005963 1 321 2.6E-130 T 10-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VF_0742 2765f6c01caa0150a2884e28b15a853e 321 Gene3D G3DSA:3.20.20.70 48 293 9.2E-24 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0742 2765f6c01caa0150a2884e28b15a853e 321 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 25 73 7.4E-9 T 10-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VF_0742 2765f6c01caa0150a2884e28b15a853e 321 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 321 1.3E-150 T 10-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VF_0742 2765f6c01caa0150a2884e28b15a853e 321 SUPERFAMILY SSF102114 51 317 5.76E-69 T 10-10-2018 VF_0742 2765f6c01caa0150a2884e28b15a853e 321 Pfam PF04055 Radical SAM superfamily 91 252 2.3E-20 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_2082 b0356ee12567f0440dceeebf209cd671 931 SMART SM00304 197 249 9.4E-5 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_2082 b0356ee12567f0440dceeebf209cd671 931 Gene3D G3DSA:1.20.120.160 817 930 5.7E-30 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_2082 b0356ee12567f0440dceeebf209cd671 931 Pfam PF00072 Response regulator receiver domain 671 782 1.5E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_2082 b0356ee12567f0440dceeebf209cd671 931 Pfam PF01627 Hpt domain 838 920 4.4E-10 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VF_2082 b0356ee12567f0440dceeebf209cd671 931 SMART SM00388 289 354 1.5E-25 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_2082 b0356ee12567f0440dceeebf209cd671 931 Gene3D G3DSA:1.10.287.130 276 354 1.4E-27 T 10-10-2018 VF_2082 b0356ee12567f0440dceeebf209cd671 931 Gene3D G3DSA:3.30.565.10 355 518 5.5E-50 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2082 b0356ee12567f0440dceeebf209cd671 931 PRINTS PR00344 Bacterial sensor protein C-terminal signature 501 514 2.8E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2082 b0356ee12567f0440dceeebf209cd671 931 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 495 2.8E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2082 b0356ee12567f0440dceeebf209cd671 931 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 470 2.8E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2082 b0356ee12567f0440dceeebf209cd671 931 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 456 2.8E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_2082 b0356ee12567f0440dceeebf209cd671 931 SUPERFAMILY SSF55874 343 515 8.77E-44 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2082 b0356ee12567f0440dceeebf209cd671 931 SMART SM00448 669 782 1.4E-36 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_2082 b0356ee12567f0440dceeebf209cd671 931 SMART SM00387 401 517 4.4E-38 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_2082 b0356ee12567f0440dceeebf209cd671 931 SMART SM00073 828 925 2.1E-5 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VF_2082 b0356ee12567f0440dceeebf209cd671 931 Gene3D G3DSA:3.40.50.2300 658 791 4.1E-38 T 10-10-2018 VF_2082 b0356ee12567f0440dceeebf209cd671 931 SUPERFAMILY SSF158472 199 246 3.14E-6 T 10-10-2018 VF_2082 b0356ee12567f0440dceeebf209cd671 931 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 31 174 1.9E-55 T 10-10-2018 IPR019247 Histidine kinase BarA, N-terminal VF_2082 b0356ee12567f0440dceeebf209cd671 931 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 401 514 4.6E-29 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_2082 b0356ee12567f0440dceeebf209cd671 931 SUPERFAMILY SSF52172 669 786 2.56E-35 T 10-10-2018 IPR011006 CheY-like superfamily VF_2082 b0356ee12567f0440dceeebf209cd671 931 Pfam PF00512 His Kinase A (phospho-acceptor) domain 290 354 1.9E-21 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_2082 b0356ee12567f0440dceeebf209cd671 931 SUPERFAMILY SSF47384 274 355 2.94E-23 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_2082 b0356ee12567f0440dceeebf209cd671 931 SUPERFAMILY SSF47226 765 920 3.27E-22 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_2082 b0356ee12567f0440dceeebf209cd671 931 Gene3D G3DSA:1.20.1480.50 164 267 6.2E-7 T 10-10-2018 VF_0414 1989eb9700e820b0dbb2770d3458053e 344 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 1 323 2.3E-107 T 10-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 VF_0414 1989eb9700e820b0dbb2770d3458053e 344 Pfam PF03739 Predicted permease YjgP/YjgQ family 2 322 2.1E-65 T 10-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 VF_A0177 19f6b7d0006eb6f65827d0cfb28a11c5 157 Gene3D G3DSA:3.30.160.70 1 70 1.4E-17 T 10-10-2018 VF_A0177 19f6b7d0006eb6f65827d0cfb28a11c5 157 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 75 154 3.1E-35 T 10-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 VF_A0177 19f6b7d0006eb6f65827d0cfb28a11c5 157 Gene3D G3DSA:1.10.10.10 74 157 4.0E-36 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0177 19f6b7d0006eb6f65827d0cfb28a11c5 157 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 125 131 - T 10-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 VF_A0177 19f6b7d0006eb6f65827d0cfb28a11c5 157 SUPERFAMILY SSF53155 4 79 1.73E-18 T 10-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 VF_A0177 19f6b7d0006eb6f65827d0cfb28a11c5 157 SUPERFAMILY SSF46767 74 155 6.41E-31 T 10-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 VF_A0177 19f6b7d0006eb6f65827d0cfb28a11c5 157 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 76 154 1.0E-31 T 10-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 VF_A0177 19f6b7d0006eb6f65827d0cfb28a11c5 157 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 2 71 5.2E-5 T 10-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 VF_A0177 19f6b7d0006eb6f65827d0cfb28a11c5 157 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 6 155 41.728 T 10-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 VF_2389 1ad7e4cf473ebe72faca756357f388d0 349 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 121 139 - T 10-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 VF_2389 1ad7e4cf473ebe72faca756357f388d0 349 Gene3D G3DSA:3.20.20.70 33 276 1.7E-78 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_2389 1ad7e4cf473ebe72faca756357f388d0 349 Pfam PF01207 Dihydrouridine synthase (Dus) 40 341 7.5E-111 T 10-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VF_2389 1ad7e4cf473ebe72faca756357f388d0 349 PIRSF PIRSF006621 27 348 3.8E-103 T 10-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VF_2389 1ad7e4cf473ebe72faca756357f388d0 349 SUPERFAMILY SSF51395 37 346 1.59E-89 T 10-10-2018 VF_2389 1ad7e4cf473ebe72faca756357f388d0 349 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 28 348 49.8 T 10-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 VF_2389 1ad7e4cf473ebe72faca756357f388d0 349 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 30 347 2.7E-133 T 10-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 VF_2389 1ad7e4cf473ebe72faca756357f388d0 349 Gene3D G3DSA:1.10.1200.80 279 349 4.1E-8 T 10-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 VF_0901 84badb8cc8a84f87dea3e88fbc2e013b 590 ProSitePatterns PS00211 ABC transporters family signature. 484 498 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0901 84badb8cc8a84f87dea3e88fbc2e013b 590 Gene3D G3DSA:3.40.50.300 341 587 1.3E-68 T 10-10-2018 VF_0901 84badb8cc8a84f87dea3e88fbc2e013b 590 SUPERFAMILY SSF52540 346 578 1.2E-61 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0901 84badb8cc8a84f87dea3e88fbc2e013b 590 SUPERFAMILY SSF90123 10 333 1.24E-56 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_0901 84badb8cc8a84f87dea3e88fbc2e013b 590 Pfam PF00664 ABC transporter transmembrane region 25 292 5.6E-44 T 10-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VF_0901 84badb8cc8a84f87dea3e88fbc2e013b 590 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 21 554 3.4E-185 T 10-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 VF_0901 84badb8cc8a84f87dea3e88fbc2e013b 590 SMART SM00382 375 558 1.5E-14 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0901 84badb8cc8a84f87dea3e88fbc2e013b 590 Pfam PF00005 ABC transporter 368 512 2.7E-28 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0901 84badb8cc8a84f87dea3e88fbc2e013b 590 Gene3D G3DSA:1.20.1560.10 3 336 3.5E-53 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_A1005 87796eef8223b1d87d4a05face6676bf 433 Pfam PF08013 Tagatose 6 phosphate kinase 5 424 9.9E-203 T 10-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 VF_A1005 87796eef8223b1d87d4a05face6676bf 433 Gene3D G3DSA:1.10.400.20 287 410 1.7E-173 T 10-10-2018 VF_A1005 87796eef8223b1d87d4a05face6676bf 433 PIRSF PIRSF009264 1 429 1.3E-201 T 10-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 VF_A1005 87796eef8223b1d87d4a05face6676bf 433 SUPERFAMILY SSF51569 5 424 1.49E-169 T 10-10-2018 VF_A1005 87796eef8223b1d87d4a05face6676bf 433 Gene3D G3DSA:3.20.20.70 8 415 1.7E-173 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A1005 87796eef8223b1d87d4a05face6676bf 433 TIGRFAM TIGR02810 agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 6 424 2.9E-203 T 10-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 VF_0692 d91012cc173ede028281f1d68782dd46 322 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 299 8.9E-18 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_0692 d91012cc173ede028281f1d68782dd46 322 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0692 d91012cc173ede028281f1d68782dd46 322 Gene3D G3DSA:3.40.50.300 1 322 1.1E-98 T 10-10-2018 VF_0692 d91012cc173ede028281f1d68782dd46 322 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 320 4.6E-27 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_0692 d91012cc173ede028281f1d68782dd46 322 SMART SM00382 39 231 6.7E-15 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0692 d91012cc173ede028281f1d68782dd46 322 Pfam PF00005 ABC transporter 31 180 1.6E-32 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0692 d91012cc173ede028281f1d68782dd46 322 SUPERFAMILY SSF52540 4 253 2.72E-72 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0731 da5fe4427edd9f418334888006c485fa 408 Pfam PF00970 Oxidoreductase FAD-binding domain 203 267 5.0E-10 T 10-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 VF_0731 da5fe4427edd9f418334888006c485fa 408 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 243 252 8.2E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0731 da5fe4427edd9f418334888006c485fa 408 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 210 217 8.2E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0731 da5fe4427edd9f418334888006c485fa 408 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 374 382 8.2E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0731 da5fe4427edd9f418334888006c485fa 408 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 277 296 8.2E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0731 da5fe4427edd9f418334888006c485fa 408 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 2 408 61.871 T 10-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 VF_0731 da5fe4427edd9f418334888006c485fa 408 SUPERFAMILY SSF63380 106 273 1.7E-36 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VF_0731 da5fe4427edd9f418334888006c485fa 408 SUPERFAMILY SSF54292 39 125 6.13E-21 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VF_0731 da5fe4427edd9f418334888006c485fa 408 Gene3D G3DSA:3.40.50.80 267 407 2.7E-29 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_0731 da5fe4427edd9f418334888006c485fa 408 PIRSF PIRSF000044 1 408 7.5E-217 T 10-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 VF_0731 da5fe4427edd9f418334888006c485fa 408 Gene3D G3DSA:2.40.30.10 127 265 7.0E-51 T 10-10-2018 VF_0731 da5fe4427edd9f418334888006c485fa 408 Gene3D G3DSA:3.10.20.30 35 126 1.7E-32 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_0731 da5fe4427edd9f418334888006c485fa 408 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 49 115 3.0E-10 T 10-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VF_0731 da5fe4427edd9f418334888006c485fa 408 SUPERFAMILY SSF52343 259 403 4.98E-35 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_0731 da5fe4427edd9f418334888006c485fa 408 Pfam PF00175 Oxidoreductase NAD-binding domain 278 386 8.4E-16 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VF_0731 da5fe4427edd9f418334888006c485fa 408 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 4 408 8.2E-224 T 10-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 Gene3D G3DSA:4.10.80.40 543 577 2.9E-16 T 10-10-2018 VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 10-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 581 3.3E-38 T 10-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 Gene3D G3DSA:3.90.700.10 237 363 1.1E-161 T 10-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 3 582 0.0 T 10-10-2018 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 SUPERFAMILY SSF51905 2 423 3.21E-72 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 PIRSF PIRSF000171 1 577 1.2E-47 T 10-10-2018 VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 581 1.0E-237 T 10-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 SUPERFAMILY SSF46977 444 583 9.42E-44 T 10-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 8.8E-10 T 10-10-2018 VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 8.8E-10 T 10-10-2018 VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 Pfam PF00890 FAD binding domain 7 397 2.0E-111 T 10-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 SUPERFAMILY SSF56425 227 358 2.24E-41 T 10-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 Gene3D G3DSA:3.50.50.60 7 409 1.1E-161 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2334 a6279577dcc0f624c9e90d957b1e58cd 601 Gene3D G3DSA:1.20.58.100 424 538 3.8E-34 T 10-10-2018 VF_1255 0c265808eda81d1b1d4a1ec51d9fb8e4 340 SUPERFAMILY SSF47413 1 56 4.58E-15 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_1255 0c265808eda81d1b1d4a1ec51d9fb8e4 340 Gene3D G3DSA:3.40.50.2300 160 289 3.3E-70 T 10-10-2018 VF_1255 0c265808eda81d1b1d4a1ec51d9fb8e4 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 10-10-2018 VF_1255 0c265808eda81d1b1d4a1ec51d9fb8e4 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.0E-5 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_1255 0c265808eda81d1b1d4a1ec51d9fb8e4 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.0E-5 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_1255 0c265808eda81d1b1d4a1ec51d9fb8e4 340 SMART SM00354 1 71 3.0E-25 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_1255 0c265808eda81d1b1d4a1ec51d9fb8e4 340 SUPERFAMILY SSF53822 61 331 1.95E-81 T 10-10-2018 IPR028082 Periplasmic binding protein-like I VF_1255 0c265808eda81d1b1d4a1ec51d9fb8e4 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 47 1.1E-16 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_1255 0c265808eda81d1b1d4a1ec51d9fb8e4 340 Pfam PF13377 Periplasmic binding protein-like domain 170 329 7.3E-34 T 10-10-2018 VF_1255 0c265808eda81d1b1d4a1ec51d9fb8e4 340 Gene3D G3DSA:1.10.260.40 3 58 1.1E-18 T 10-10-2018 VF_1255 0c265808eda81d1b1d4a1ec51d9fb8e4 340 Gene3D G3DSA:3.40.50.2300 60 305 3.3E-70 T 10-10-2018 VF_A0292 a4aa29de28371370f4d07d1f5d9dae86 364 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 3 356 1.1E-132 T 10-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 VF_A0292 a4aa29de28371370f4d07d1f5d9dae86 364 SMART SM00382 23 206 9.9E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0292 a4aa29de28371370f4d07d1f5d9dae86 364 Gene3D G3DSA:2.40.50.100 293 357 2.9E-11 T 10-10-2018 VF_A0292 a4aa29de28371370f4d07d1f5d9dae86 364 Gene3D G3DSA:3.40.50.300 5 222 2.3E-51 T 10-10-2018 VF_A0292 a4aa29de28371370f4d07d1f5d9dae86 364 Pfam PF00005 ABC transporter 16 156 1.4E-30 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0292 a4aa29de28371370f4d07d1f5d9dae86 364 Pfam PF03459 TOBE domain 294 356 2.0E-11 T 10-10-2018 IPR005116 Transport-associated OB, type 1 VF_A0292 a4aa29de28371370f4d07d1f5d9dae86 364 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0292 a4aa29de28371370f4d07d1f5d9dae86 364 SUPERFAMILY SSF50331 234 356 1.22E-17 T 10-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VF_A0292 a4aa29de28371370f4d07d1f5d9dae86 364 SUPERFAMILY SSF52540 4 227 1.15E-58 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0932 06cabf4cd2a2ab2bbfdd085ce14a1c31 172 SUPERFAMILY SSF49777 19 172 3.66E-52 T 10-10-2018 IPR036610 PEBP-like superfamily VF_A0932 06cabf4cd2a2ab2bbfdd085ce14a1c31 172 Pfam PF01161 Phosphatidylethanolamine-binding protein 38 170 1.2E-36 T 10-10-2018 IPR008914 Phosphatidylethanolamine-binding protein VF_A0932 06cabf4cd2a2ab2bbfdd085ce14a1c31 172 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 38 169 1.6E-39 T 10-10-2018 IPR005247 YbhB/YbcL VF_A0932 06cabf4cd2a2ab2bbfdd085ce14a1c31 172 Gene3D G3DSA:3.90.280.10 10 172 2.1E-54 T 10-10-2018 IPR036610 PEBP-like superfamily VF_A0510 3a03e49d5e40facb978f3c421c9b0db6 322 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 163 6.1E-40 T 10-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain VF_A0510 3a03e49d5e40facb978f3c421c9b0db6 322 SUPERFAMILY SSF52540 2 164 6.65E-28 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0510 3a03e49d5e40facb978f3c421c9b0db6 322 Gene3D G3DSA:3.40.50.300 1 195 4.7E-46 T 10-10-2018 VF_0795 7ef68069423457524c7a00ca6343c9ec 432 Gene3D G3DSA:1.10.3120.10 116 416 2.3E-101 T 10-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 VF_0795 7ef68069423457524c7a00ca6343c9ec 432 SUPERFAMILY SSF109998 248 428 1.83E-47 T 10-10-2018 IPR027304 Trigger factor/SurA domain superfamily VF_0795 7ef68069423457524c7a00ca6343c9ec 432 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 411 2.1E-39 T 10-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 VF_0795 7ef68069423457524c7a00ca6343c9ec 432 SUPERFAMILY SSF54534 89 241 5.7E-37 T 10-10-2018 VF_0795 7ef68069423457524c7a00ca6343c9ec 432 Gene3D G3DSA:3.30.70.1050 1 115 3.7E-41 T 10-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 VF_0795 7ef68069423457524c7a00ca6343c9ec 432 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 157 236 2.3E-14 T 10-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VF_0795 7ef68069423457524c7a00ca6343c9ec 432 SUPERFAMILY SSF102735 1 131 2.35E-40 T 10-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 VF_0795 7ef68069423457524c7a00ca6343c9ec 432 Gene3D G3DSA:3.10.50.40 150 246 2.3E-101 T 10-10-2018 VF_0795 7ef68069423457524c7a00ca6343c9ec 432 Hamap MF_00303 Trigger factor [tig]. 1 417 21.4 T 10-10-2018 IPR005215 Trigger factor GO:0015031 VF_0795 7ef68069423457524c7a00ca6343c9ec 432 PIRSF PIRSF003095 1 432 1.3E-122 T 10-10-2018 IPR005215 Trigger factor GO:0015031 VF_0795 7ef68069423457524c7a00ca6343c9ec 432 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 2.9E-41 T 10-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 VF_0795 7ef68069423457524c7a00ca6343c9ec 432 TIGRFAM TIGR00115 tig: trigger factor 11 411 1.8E-139 T 10-10-2018 IPR005215 Trigger factor GO:0015031 VF_2469 506e8605297efa256de72007e363cd82 125 SUPERFAMILY SSF54523 44 123 4.32E-22 T 10-10-2018 VF_2469 506e8605297efa256de72007e363cd82 125 Pfam PF02501 Type II secretion system (T2SS), protein I 47 123 3.9E-23 T 10-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 VF_2469 506e8605297efa256de72007e363cd82 125 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 12 32 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2469 506e8605297efa256de72007e363cd82 125 TIGRFAM TIGR01707 gspI: type II secretion system protein I 13 110 3.0E-32 T 10-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 VF_2469 506e8605297efa256de72007e363cd82 125 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 33 2.1E-6 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2469 506e8605297efa256de72007e363cd82 125 Gene3D G3DSA:3.30.1300.30 37 125 6.1E-32 T 10-10-2018 VF_2469 506e8605297efa256de72007e363cd82 125 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 33 8.1E-7 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_1149 56dd4690f285b9f33d50e8085fc67e96 560 Pfam PF15714 Stage V sporulation protein T C-terminal, transcription factor 228 352 5.3E-7 T 10-10-2018 IPR039472 Sporulation stage V protein T, GAF domain VF_1149 56dd4690f285b9f33d50e8085fc67e96 560 SUPERFAMILY SSF55874 421 553 4.98E-12 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1149 56dd4690f285b9f33d50e8085fc67e96 560 Gene3D G3DSA:3.30.450.40 227 353 2.4E-6 T 10-10-2018 IPR029016 GAF-like domain superfamily VF_1149 56dd4690f285b9f33d50e8085fc67e96 560 Pfam PF06580 Histidine kinase 367 445 2.5E-26 T 10-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 VF_1149 56dd4690f285b9f33d50e8085fc67e96 560 SMART SM00065 224 362 0.0035 T 10-10-2018 IPR003018 GAF domain GO:0005515 VF_1149 56dd4690f285b9f33d50e8085fc67e96 560 SUPERFAMILY SSF55781 226 355 2.79E-9 T 10-10-2018 VF_1149 56dd4690f285b9f33d50e8085fc67e96 560 Gene3D G3DSA:3.30.565.10 402 559 1.9E-13 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1149 56dd4690f285b9f33d50e8085fc67e96 560 Pfam PF07694 5TMR of 5TMR-LYT 26 194 3.7E-60 T 10-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 VF_2451 2ed4520e96711876b927a5f97941ffb7 317 PIRSF PIRSF003097 18 313 1.6E-68 T 10-10-2018 IPR004513 Cell division protein FtsX GO:0016021 VF_A0897 470c9759b57fcb032de1b50ff99b6428 287 Gene3D G3DSA:3.40.190.10 148 246 5.4E-30 T 10-10-2018 VF_A0897 470c9759b57fcb032de1b50ff99b6428 287 Pfam PF03466 LysR substrate binding domain 113 274 1.8E-14 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0897 470c9759b57fcb032de1b50ff99b6428 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 60 3.8E-16 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0897 470c9759b57fcb032de1b50ff99b6428 287 SUPERFAMILY SSF46785 1 81 6.53E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0897 470c9759b57fcb032de1b50ff99b6428 287 Gene3D G3DSA:1.10.10.10 1 84 7.1E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0897 470c9759b57fcb032de1b50ff99b6428 287 SUPERFAMILY SSF53850 102 273 1.59E-29 T 10-10-2018 VF_A0897 470c9759b57fcb032de1b50ff99b6428 287 Gene3D G3DSA:3.40.190.10 110 270 5.4E-30 T 10-10-2018 VF_A0897 470c9759b57fcb032de1b50ff99b6428 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.6E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0897 470c9759b57fcb032de1b50ff99b6428 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.6E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0897 470c9759b57fcb032de1b50ff99b6428 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.6E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0933 6a51db0b8b28224cb5c0fef58e521945 827 SUPERFAMILY SSF46548 338 448 6.28E-19 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_0933 6a51db0b8b28224cb5c0fef58e521945 827 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 13 449 1.9E-181 T 10-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 VF_0933 6a51db0b8b28224cb5c0fef58e521945 827 SUPERFAMILY SSF142019 95 305 1.09E-59 T 10-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_0933 6a51db0b8b28224cb5c0fef58e521945 827 Gene3D G3DSA:3.40.50.11540 146 288 2.0E-13 T 10-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_0933 6a51db0b8b28224cb5c0fef58e521945 827 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 141 285 1.2E-48 T 10-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_0933 6a51db0b8b28224cb5c0fef58e521945 827 Gene3D G3DSA:1.10.1060.10 367 447 2.0E-11 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_0933 6a51db0b8b28224cb5c0fef58e521945 827 Pfam PF13237 4Fe-4S dicluster domain 377 430 8.8E-8 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_0933 6a51db0b8b28224cb5c0fef58e521945 827 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 419 430 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_0933 6a51db0b8b28224cb5c0fef58e521945 827 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 747 246.189 T 10-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 VF_0933 6a51db0b8b28224cb5c0fef58e521945 827 Pfam PF13375 RnfC Barrel sandwich hybrid domain 14 116 1.0E-35 T 10-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain VF_0933 6a51db0b8b28224cb5c0fef58e521945 827 Pfam PF10531 SLBB domain 298 347 1.1E-10 T 10-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_1922 e4bc3ac406338fe954a3091dd3190796 484 Gene3D G3DSA:3.30.2010.10 70 150 1.9E-7 T 10-10-2018 VF_1922 e4bc3ac406338fe954a3091dd3190796 484 Pfam PF01435 Peptidase family M48 71 256 3.3E-29 T 10-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 VF_1922 e4bc3ac406338fe954a3091dd3190796 484 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 3 484 39.053 T 10-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 VF_1922 e4bc3ac406338fe954a3091dd3190796 484 Gene3D G3DSA:1.25.40.10 287 476 4.1E-14 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1922 e4bc3ac406338fe954a3091dd3190796 484 Pfam PF14559 Tetratricopeptide repeat 358 418 1.9E-8 T 10-10-2018 VF_1922 e4bc3ac406338fe954a3091dd3190796 484 SUPERFAMILY SSF48452 316 456 2.85E-12 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0723 ff6d4139477f08c53c00fb446c39bbde 382 Gene3D G3DSA:3.40.50.150 187 382 1.0E-44 T 10-10-2018 VF_0723 ff6d4139477f08c53c00fb446c39bbde 382 Pfam PF05175 Methyltransferase small domain 201 373 7.1E-50 T 10-10-2018 IPR007848 Methyltransferase small domain GO:0008168 VF_0723 ff6d4139477f08c53c00fb446c39bbde 382 Gene3D G3DSA:3.40.50.150 9 182 3.9E-52 T 10-10-2018 VF_0723 ff6d4139477f08c53c00fb446c39bbde 382 SUPERFAMILY SSF53335 198 349 1.73E-24 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_0723 ff6d4139477f08c53c00fb446c39bbde 382 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 2 377 49.722 T 10-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 VF_0723 ff6d4139477f08c53c00fb446c39bbde 382 PIRSF PIRSF037565 1 378 2.7E-172 T 10-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 VF_0976 e6248daf7d9a1edd04690b08411562a7 486 Pfam PF03917 Eukaryotic glutathione synthase, ATP binding domain 11 484 1.4E-66 T 10-10-2018 IPR005615 Glutathione synthase GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|Reactome: R-HSA-174403|Reactome: R-HSA-5579006 VF_0976 e6248daf7d9a1edd04690b08411562a7 486 Gene3D G3DSA:1.10.1080.10 58 354 5.7E-110 T 10-10-2018 IPR014042 Glutathione synthase, alpha-helical GO:0004363|GO:0005524|GO:0006750|GO:0016874 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|Reactome: R-HSA-174403|Reactome: R-HSA-5579006 VF_0976 e6248daf7d9a1edd04690b08411562a7 486 Gene3D G3DSA:3.30.1490.50 355 423 5.7E-110 T 10-10-2018 IPR014709 Glutathione synthase, C-terminal, eukaryotic KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|Reactome: R-HSA-174403|Reactome: R-HSA-5579006 VF_0976 e6248daf7d9a1edd04690b08411562a7 486 Pfam PF03199 Eukaryotic glutathione synthase 206 314 1.6E-21 T 10-10-2018 IPR004887 Glutathione synthase, substrate-binding domain GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|Reactome: R-HSA-174403|Reactome: R-HSA-5579006 VF_0976 e6248daf7d9a1edd04690b08411562a7 486 Gene3D G3DSA:3.40.50.1760 182 319 5.7E-110 T 10-10-2018 IPR037013 Glutathione synthase, substrate-binding domain superfamily GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|Reactome: R-HSA-174403|Reactome: R-HSA-5579006 VF_0976 e6248daf7d9a1edd04690b08411562a7 486 Gene3D G3DSA:3.30.1490.80 12 435 5.7E-110 T 10-10-2018 IPR014049 Glutathione synthase, N-terminal, eukaryotic GO:0004363|GO:0005524 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|Reactome: R-HSA-174403|Reactome: R-HSA-5579006 VF_0976 e6248daf7d9a1edd04690b08411562a7 486 PIRSF PIRSF001558 2 485 1.3E-83 T 10-10-2018 IPR005615 Glutathione synthase GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|Reactome: R-HSA-174403|Reactome: R-HSA-5579006 VF_0976 e6248daf7d9a1edd04690b08411562a7 486 Gene3D G3DSA:3.30.470.20 46 482 5.7E-110 T 10-10-2018 VF_0976 e6248daf7d9a1edd04690b08411562a7 486 SUPERFAMILY SSF52440 204 315 1.44E-26 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VF_0976 e6248daf7d9a1edd04690b08411562a7 486 SUPERFAMILY SSF56059 11 484 9.89E-100 T 10-10-2018 VF_A0726 03bb5ac0a9c2b18f877b8f6edb33f2e3 325 SUPERFAMILY SSF51735 2 152 1.84E-44 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0726 03bb5ac0a9c2b18f877b8f6edb33f2e3 325 Gene3D G3DSA:3.30.360.10 134 325 3.2E-51 T 10-10-2018 VF_A0726 03bb5ac0a9c2b18f877b8f6edb33f2e3 325 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 118 2.0E-25 T 10-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 VF_A0726 03bb5ac0a9c2b18f877b8f6edb33f2e3 325 SUPERFAMILY SSF55347 126 290 6.05E-24 T 10-10-2018 VF_A0726 03bb5ac0a9c2b18f877b8f6edb33f2e3 325 Gene3D G3DSA:3.40.50.720 1 133 6.4E-35 T 10-10-2018 VF_A0792 f7312d0ce9ab7c3cea8acbde2aea4e6e 281 Pfam PF00561 alpha/beta hydrolase fold 31 160 5.6E-6 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_A0792 f7312d0ce9ab7c3cea8acbde2aea4e6e 281 SUPERFAMILY SSF53474 8 278 7.67E-27 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 SUPERFAMILY SSF88697 277 368 5.14E-24 T 10-10-2018 IPR015947 PUA-like superfamily VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 Gene3D G3DSA:3.40.1160.10 2 266 1.0E-86 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 ProSitePatterns PS00902 Glutamate 5-kinase signature. 208 225 - T 10-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 SMART SM00359 278 361 2.9E-20 T 10-10-2018 IPR002478 PUA domain GO:0003723 VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 SUPERFAMILY SSF53633 6 257 7.07E-66 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 PIRSF PIRSF000729 1 369 2.5E-137 T 10-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 Hamap MF_00456 Glutamate 5-kinase [proB]. 6 260 35.905 T 10-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 Pfam PF00696 Amino acid kinase family 7 235 3.3E-42 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 Pfam PF01472 PUA domain 278 352 1.4E-20 T 10-10-2018 IPR002478 PUA domain GO:0003723 VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 TIGRFAM TIGR01027 proB: glutamate 5-kinase 6 367 5.1E-148 T 10-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 Gene3D G3DSA:2.30.130.10 267 369 6.5E-31 T 10-10-2018 IPR036974 PUA domain superfamily GO:0003723 VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 PRINTS PR00474 Glutamate 5-kinase family signature 77 105 9.7E-53 T 10-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 PRINTS PR00474 Glutamate 5-kinase family signature 43 57 9.7E-53 T 10-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 PRINTS PR00474 Glutamate 5-kinase family signature 210 230 9.7E-53 T 10-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 PRINTS PR00474 Glutamate 5-kinase family signature 149 176 9.7E-53 T 10-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 VF_0740 31de107b1f83900a4f86ae20ce9a5c28 369 PRINTS PR00474 Glutamate 5-kinase family signature 117 138 9.7E-53 T 10-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 VF_0993 8ad32881dc77725e7e73b56fe9bbbc61 1173 SUPERFAMILY SSF52540 128 292 6.65E-13 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0993 8ad32881dc77725e7e73b56fe9bbbc61 1173 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 18 1169 1.6E-290 T 10-10-2018 IPR017731 Type VI secretion system, IcmF VF_0993 8ad32881dc77725e7e73b56fe9bbbc61 1173 Pfam PF14331 ImcF-related N-terminal domain 202 452 2.7E-73 T 10-10-2018 IPR025743 ImcF-related, N-terminal domain VF_0993 8ad32881dc77725e7e73b56fe9bbbc61 1173 Pfam PF06744 Type VI secretion protein IcmF C-terminal 919 1119 1.8E-48 T 10-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal VF_0993 8ad32881dc77725e7e73b56fe9bbbc61 1173 Gene3D G3DSA:3.40.50.300 128 319 4.1E-8 T 10-10-2018 VF_0993 8ad32881dc77725e7e73b56fe9bbbc61 1173 Pfam PF06761 Intracellular multiplication and human macrophage-killing 502 795 2.2E-66 T 10-10-2018 IPR009612 ImcF-related VF_1606 4b7477b5705f096f1290c939fb288162 484 Hamap MF_00190 Cardiolipin synthase A [clsA]. 2 484 48.917 T 10-10-2018 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 VF_1606 4b7477b5705f096f1290c939fb288162 484 Gene3D G3DSA:3.30.870.10 298 482 4.1E-30 T 10-10-2018 VF_1606 4b7477b5705f096f1290c939fb288162 484 SUPERFAMILY SSF56024 272 470 1.3E-51 T 10-10-2018 VF_1606 4b7477b5705f096f1290c939fb288162 484 Gene3D G3DSA:3.30.870.10 119 297 9.3E-39 T 10-10-2018 VF_1606 4b7477b5705f096f1290c939fb288162 484 Pfam PF13396 Phospholipase_D-nuclease N-terminal 20 59 3.0E-6 T 10-10-2018 IPR027379 Cardiolipin synthase N-terminal VF_1606 4b7477b5705f096f1290c939fb288162 484 SUPERFAMILY SSF56024 70 313 2.3E-51 T 10-10-2018 VF_1606 4b7477b5705f096f1290c939fb288162 484 SMART SM00155 219 246 4.4E-5 T 10-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VF_1606 4b7477b5705f096f1290c939fb288162 484 SMART SM00155 397 424 8.8E-7 T 10-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VF_1606 4b7477b5705f096f1290c939fb288162 484 Pfam PF13091 PLD-like domain 134 252 4.3E-15 T 10-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VF_1606 4b7477b5705f096f1290c939fb288162 484 Pfam PF13091 PLD-like domain 324 445 1.7E-26 T 10-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VF_1606 4b7477b5705f096f1290c939fb288162 484 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 8 484 4.6E-145 T 10-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 VF_2239 d0b3a0099e77d729534d7eda910fd829 226 Pfam PF01865 Protein of unknown function DUF47 7 223 1.2E-67 T 10-10-2018 IPR018445 Putative phosphate transport regulator VF_2239 d0b3a0099e77d729534d7eda910fd829 226 SUPERFAMILY SSF109755 39 218 2.96E-16 T 10-10-2018 VF_2239 d0b3a0099e77d729534d7eda910fd829 226 TIGRFAM TIGR00153 TIGR00153: TIGR00153 family protein 4 225 9.2E-69 T 10-10-2018 IPR002727 Protein of unknown function DUF47 VF_2239 d0b3a0099e77d729534d7eda910fd829 226 Gene3D G3DSA:1.20.58.220 1 225 2.4E-63 T 10-10-2018 IPR038078 PhoU-like domain superfamily VF_1601 465494f39a7094d23f38e8c4891936e5 165 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 10-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 VF_1601 465494f39a7094d23f38e8c4891936e5 165 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 2 156 2.8E-48 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VF_1601 465494f39a7094d23f38e8c4891936e5 165 PIRSF PIRSF001467 1 162 3.3E-29 T 10-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 VF_1601 465494f39a7094d23f38e8c4891936e5 165 Gene3D G3DSA:2.40.100.10 1 165 3.5E-64 T 10-10-2018 IPR029000 Cyclophilin-like domain superfamily VF_1601 465494f39a7094d23f38e8c4891936e5 165 SUPERFAMILY SSF50891 1 163 4.97E-57 T 10-10-2018 IPR029000 Cyclophilin-like domain superfamily VF_1601 465494f39a7094d23f38e8c4891936e5 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 2.3E-11 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VF_1601 465494f39a7094d23f38e8c4891936e5 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 2.3E-11 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VF_1601 465494f39a7094d23f38e8c4891936e5 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 2.3E-11 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VF_1840 7b8177b504aa05d43d81a100f0d185f6 260 Pfam PF01311 Bacterial export proteins, family 1 13 242 1.0E-53 T 10-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VF_1840 7b8177b504aa05d43d81a100f0d185f6 260 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 12 256 1.1E-67 T 10-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 VF_1840 7b8177b504aa05d43d81a100f0d185f6 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 6.3E-15 T 10-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VF_1840 7b8177b504aa05d43d81a100f0d185f6 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 6.3E-15 T 10-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VF_1840 7b8177b504aa05d43d81a100f0d185f6 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 21 42 6.3E-15 T 10-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VF_1840 7b8177b504aa05d43d81a100f0d185f6 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 6.3E-15 T 10-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VF_A0387 f629e3d411f37279ef174248f71aaf88 303 Pfam PF03466 LysR substrate binding domain 92 283 1.2E-39 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0387 f629e3d411f37279ef174248f71aaf88 303 SUPERFAMILY SSF46785 3 113 2.31E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0387 f629e3d411f37279ef174248f71aaf88 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.5E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0387 f629e3d411f37279ef174248f71aaf88 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.5E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0387 f629e3d411f37279ef174248f71aaf88 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.5E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0387 f629e3d411f37279ef174248f71aaf88 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 5.0E-19 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0387 f629e3d411f37279ef174248f71aaf88 303 SUPERFAMILY SSF53850 92 288 7.14E-35 T 10-10-2018 VF_A0387 f629e3d411f37279ef174248f71aaf88 303 Gene3D G3DSA:1.10.10.10 3 84 8.0E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0387 f629e3d411f37279ef174248f71aaf88 303 Gene3D G3DSA:3.40.190.10 94 278 4.8E-34 T 10-10-2018 VF_A0387 f629e3d411f37279ef174248f71aaf88 303 Gene3D G3DSA:3.40.190.10 167 270 4.8E-34 T 10-10-2018 VF_2182 f3dab609e0afca75a3d75c431caaf742 256 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 1.9E-25 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_2182 f3dab609e0afca75a3d75c431caaf742 256 SUPERFAMILY SSF46785 5 76 2.26E-22 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_2182 f3dab609e0afca75a3d75c431caaf742 256 SMART SM00345 15 74 7.0E-28 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_2182 f3dab609e0afca75a3d75c431caaf742 256 SMART SM00895 99 227 7.0E-15 T 10-10-2018 IPR011711 GntR, C-terminal VF_2182 f3dab609e0afca75a3d75c431caaf742 256 Pfam PF07729 FCD domain 99 226 6.6E-18 T 10-10-2018 IPR011711 GntR, C-terminal VF_2182 f3dab609e0afca75a3d75c431caaf742 256 Gene3D G3DSA:1.20.120.530 97 235 3.0E-24 T 10-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VF_2182 f3dab609e0afca75a3d75c431caaf742 256 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 1.1E-9 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_2182 f3dab609e0afca75a3d75c431caaf742 256 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 1.1E-9 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_2182 f3dab609e0afca75a3d75c431caaf742 256 Gene3D G3DSA:1.10.10.10 1 74 1.5E-27 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2182 f3dab609e0afca75a3d75c431caaf742 256 SUPERFAMILY SSF48008 95 235 7.06E-19 T 10-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 SUPERFAMILY SSF51735 3 142 1.92E-32 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 SMART SM00881 7 102 3.0E-23 T 10-10-2018 IPR003781 CoA-binding GO:0048037 VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 Pfam PF13549 ATP-grasp domain 489 706 2.3E-66 T 10-10-2018 VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 Gene3D G3DSA:3.40.50.261 295 465 5.5E-49 T 10-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 Gene3D G3DSA:3.30.1490.20 511 588 2.5E-51 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 Pfam PF00583 Acetyltransferase (GNAT) family 772 875 3.1E-8 T 10-10-2018 IPR000182 GNAT domain VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 SUPERFAMILY SSF52210 132 293 6.15E-38 T 10-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 Gene3D G3DSA:3.40.50.720 2 137 7.2E-33 T 10-10-2018 VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 Gene3D G3DSA:3.30.470.20 492 702 2.5E-51 T 10-10-2018 VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 Gene3D G3DSA:3.40.630.30 730 892 1.7E-36 T 10-10-2018 VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 SUPERFAMILY SSF56059 493 702 3.83E-25 T 10-10-2018 VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 SUPERFAMILY SSF52210 298 457 4.71E-41 T 10-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 154 291 6.9E-50 T 10-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 Gene3D G3DSA:3.40.50.261 138 294 9.7E-51 T 10-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 Pfam PF13380 CoA binding domain 12 138 8.8E-22 T 10-10-2018 IPR003781 CoA-binding GO:0048037 VF_A0568 2f248f4b886e859b5c0af99466446e7d 892 SUPERFAMILY SSF55729 739 877 6.97E-18 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_0808 1c34dc9a5d9eb7ce1fd124dbefbbfb90 497 Gene3D G3DSA:3.30.1360.60 407 487 6.0E-26 T 10-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VF_0808 1c34dc9a5d9eb7ce1fd124dbefbbfb90 497 Pfam PF02378 Phosphotransferase system, EIIC 11 324 4.9E-79 T 10-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VF_0808 1c34dc9a5d9eb7ce1fd124dbefbbfb90 497 SUPERFAMILY SSF55604 411 485 2.35E-20 T 10-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VF_0808 1c34dc9a5d9eb7ce1fd124dbefbbfb90 497 Pfam PF00367 phosphotransferase system, EIIB 414 445 7.5E-13 T 10-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VF_0808 1c34dc9a5d9eb7ce1fd124dbefbbfb90 497 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 425 442 - T 10-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VF_0808 1c34dc9a5d9eb7ce1fd124dbefbbfb90 497 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 384 472 3.2E-21 T 10-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 VF_0808 1c34dc9a5d9eb7ce1fd124dbefbbfb90 497 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 3 483 5.9E-216 T 10-10-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 VF_2123 713d8c4dc42f776555098cdb9b55a0ec 313 SMART SM00729 23 247 5.5E-45 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VF_2123 713d8c4dc42f776555098cdb9b55a0ec 313 Pfam PF16199 Radical_SAM C-terminal domain 209 280 1.3E-19 T 10-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 VF_2123 713d8c4dc42f776555098cdb9b55a0ec 313 SUPERFAMILY SSF102114 13 255 5.23E-50 T 10-10-2018 VF_2123 713d8c4dc42f776555098cdb9b55a0ec 313 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 7 300 4.6E-130 T 10-10-2018 IPR005911 Protein YhcC-like GO:0051536 VF_2123 713d8c4dc42f776555098cdb9b55a0ec 313 Gene3D G3DSA:3.80.30.20 42 271 2.4E-19 T 10-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VF_2123 713d8c4dc42f776555098cdb9b55a0ec 313 Pfam PF04055 Radical SAM superfamily 43 202 2.8E-16 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_0294 443e4afc125eda3cf97eafff324a3210 363 SUPERFAMILY SSF53659 3 361 1.22E-122 T 10-10-2018 VF_0294 443e4afc125eda3cf97eafff324a3210 363 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 248 267 - T 10-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 VF_0294 443e4afc125eda3cf97eafff324a3210 363 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 7 355 1.9E-163 T 10-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 VF_0294 443e4afc125eda3cf97eafff324a3210 363 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 356 5.1E-136 T 10-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 VF_0294 443e4afc125eda3cf97eafff324a3210 363 Gene3D G3DSA:3.40.718.10 1 363 2.2E-155 T 10-10-2018 VF_0294 443e4afc125eda3cf97eafff324a3210 363 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 6 360 50.615 T 10-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 VF_0294 443e4afc125eda3cf97eafff324a3210 363 SMART SM01329 7 356 6.0E-200 T 10-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 VF_A0436 6d7b2c461b66b3e9d3291b7d364073ef 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 222 2.1E-24 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0436 6d7b2c461b66b3e9d3291b7d364073ef 225 Gene3D G3DSA:3.40.50.2300 1 118 4.1E-37 T 10-10-2018 VF_A0436 6d7b2c461b66b3e9d3291b7d364073ef 225 SUPERFAMILY SSF52172 1 118 5.12E-37 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0436 6d7b2c461b66b3e9d3291b7d364073ef 225 Gene3D G3DSA:1.10.10.10 119 224 8.4E-31 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0436 6d7b2c461b66b3e9d3291b7d364073ef 225 SMART SM00862 147 222 2.7E-24 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0436 6d7b2c461b66b3e9d3291b7d364073ef 225 SMART SM00448 1 112 9.8E-37 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0436 6d7b2c461b66b3e9d3291b7d364073ef 225 SUPERFAMILY SSF46894 121 223 9.07E-29 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_A0436 6d7b2c461b66b3e9d3291b7d364073ef 225 Pfam PF00072 Response regulator receiver domain 3 113 3.7E-26 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1014 a8e11e7c88115fdf3676d07cca588c75 346 Gene3D G3DSA:3.40.640.10 49 253 1.5E-120 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_1014 a8e11e7c88115fdf3676d07cca588c75 346 Gene3D G3DSA:3.90.1150.10 4 336 1.5E-120 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_1014 a8e11e7c88115fdf3676d07cca588c75 346 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 206 215 - T 10-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 VF_1014 a8e11e7c88115fdf3676d07cca588c75 346 SUPERFAMILY SSF53383 10 343 1.24E-76 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_1014 a8e11e7c88115fdf3676d07cca588c75 346 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 345 53.284 T 10-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 VF_1014 a8e11e7c88115fdf3676d07cca588c75 346 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 6 342 1.9E-117 T 10-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 VF_1014 a8e11e7c88115fdf3676d07cca588c75 346 Pfam PF00155 Aminotransferase class I and II 45 338 3.5E-55 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VF_0832 18a50a5867629527a4134150d95585f7 1135 SUPERFAMILY SSF63829 254 449 3.6E-9 T 10-10-2018 VF_0832 18a50a5867629527a4134150d95585f7 1135 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 1099 1114 7.6E-5 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_0832 18a50a5867629527a4134150d95585f7 1135 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 1114 1130 7.6E-5 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_0832 18a50a5867629527a4134150d95585f7 1135 SMART SM00342 1048 1130 1.2E-27 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_0832 18a50a5867629527a4134150d95585f7 1135 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 1085 1126 - T 10-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VF_0832 18a50a5867629527a4134150d95585f7 1135 Gene3D G3DSA:2.130.10.10 38 223 1.8E-6 T 10-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VF_0832 18a50a5867629527a4134150d95585f7 1135 Gene3D G3DSA:2.130.10.10 230 406 2.5E-23 T 10-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VF_0832 18a50a5867629527a4134150d95585f7 1135 Pfam PF12833 Helix-turn-helix domain 1055 1130 9.9E-23 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_0832 18a50a5867629527a4134150d95585f7 1135 SUPERFAMILY SSF55874 862 1003 2.75E-5 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0832 18a50a5867629527a4134150d95585f7 1135 SUPERFAMILY SSF50952 49 226 9.94E-6 T 10-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 VF_0832 18a50a5867629527a4134150d95585f7 1135 SUPERFAMILY SSF46689 1085 1130 1.21E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_0832 18a50a5867629527a4134150d95585f7 1135 Gene3D G3DSA:3.30.565.10 850 1004 1.1E-5 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0832 18a50a5867629527a4134150d95585f7 1135 Gene3D G3DSA:1.10.10.60 1026 1135 6.9E-26 T 10-10-2018 VF_0832 18a50a5867629527a4134150d95585f7 1135 Gene3D G3DSA:2.130.10.10 410 615 1.6E-20 T 10-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VF_0832 18a50a5867629527a4134150d95585f7 1135 Pfam PF07494 Two component regulator propeller 287 310 0.015 T 10-10-2018 IPR011110 Two component regulator propeller VF_1742 b75fd1d2e7db42a3b392e1f5d0c90cf8 317 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 317 70.339 T 10-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VF_1742 b75fd1d2e7db42a3b392e1f5d0c90cf8 317 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 7.2E-32 T 10-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VF_1742 b75fd1d2e7db42a3b392e1f5d0c90cf8 317 Gene3D G3DSA:3.40.47.10 1 317 1.8E-126 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_1742 b75fd1d2e7db42a3b392e1f5d0c90cf8 317 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 317 4.0E-143 T 10-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VF_1742 b75fd1d2e7db42a3b392e1f5d0c90cf8 317 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 228 316 6.4E-36 T 10-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VF_1742 b75fd1d2e7db42a3b392e1f5d0c90cf8 317 SUPERFAMILY SSF53901 3 316 2.88E-70 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0748 d98874aecaf1721e047df62cbebc4191 626 Gene3D G3DSA:3.30.1390.30 87 162 1.3E-50 T 10-10-2018 VF_0748 d98874aecaf1721e047df62cbebc4191 626 SUPERFAMILY SSF56519 58 254 4.05E-52 T 10-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 VF_0748 d98874aecaf1721e047df62cbebc4191 626 Pfam PF03717 Penicillin-binding Protein dimerisation domain 66 241 6.2E-46 T 10-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 VF_0748 d98874aecaf1721e047df62cbebc4191 626 Gene3D G3DSA:3.40.710.10 251 625 1.7E-96 T 10-10-2018 VF_0748 d98874aecaf1721e047df62cbebc4191 626 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 22 616 2.5E-235 T 10-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_0748 d98874aecaf1721e047df62cbebc4191 626 Pfam PF00905 Penicillin binding protein transpeptidase domain 273 612 6.0E-79 T 10-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 VF_0748 d98874aecaf1721e047df62cbebc4191 626 SUPERFAMILY SSF56601 256 616 2.18E-95 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VF_0748 d98874aecaf1721e047df62cbebc4191 626 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 5 620 52.104 T 10-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_0748 d98874aecaf1721e047df62cbebc4191 626 Gene3D G3DSA:3.90.1310.10 66 250 1.3E-50 T 10-10-2018 VF_A0444 0066afc1d132c113fbfe228241af2404 489 Gene3D G3DSA:2.40.50.320 415 484 3.1E-11 T 10-10-2018 VF_A0444 0066afc1d132c113fbfe228241af2404 489 Gene3D G3DSA:2.40.50.100 204 248 8.0E-25 T 10-10-2018 VF_A0444 0066afc1d132c113fbfe228241af2404 489 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 215 395 9.9E-30 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VF_A0444 0066afc1d132c113fbfe228241af2404 489 Gene3D G3DSA:2.40.50.100 130 164 2.0E-8 T 10-10-2018 VF_A0444 0066afc1d132c113fbfe228241af2404 489 Gene3D G3DSA:2.40.30.170 249 322 8.0E-25 T 10-10-2018 VF_A0444 0066afc1d132c113fbfe228241af2404 489 Gene3D G3DSA:1.10.287.470 165 177 2.0E-8 T 10-10-2018 VF_A0444 0066afc1d132c113fbfe228241af2404 489 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 113 321 9.5E-74 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VF_A0444 0066afc1d132c113fbfe228241af2404 489 Pfam PF11604 Copper binding periplasmic protein CusF 418 483 3.0E-15 T 10-10-2018 IPR021647 Copper binding periplasmic protein CusF VF_A0444 0066afc1d132c113fbfe228241af2404 489 SUPERFAMILY SSF111369 131 326 1.44E-13 T 10-10-2018 VF_A0444 0066afc1d132c113fbfe228241af2404 489 Gene3D G3DSA:2.40.30.170 116 129 2.0E-8 T 10-10-2018 VF_A0444 0066afc1d132c113fbfe228241af2404 489 Gene3D G3DSA:2.40.420.20 326 414 2.5E-21 T 10-10-2018 VF_A0563 9d7d0e17dd53d664195580ee961231db 53 Pfam PF03701 Uncharacterised protein family (UPF0181) 1 48 2.8E-24 T 10-10-2018 IPR005371 Uncharacterised protein family UPF0181 VF_A0563 9d7d0e17dd53d664195580ee961231db 53 ProDom PD026807 UPF0181 YOAH YPTB1650 VV20310 VPA0916 VCA0569 YPO1774/Y2534/YP1619 PLU2693 VVA0806 PM0480 3 50 6.0E-20 T 10-10-2018 IPR005371 Uncharacterised protein family UPF0181 VF_0683 1c009f75740c5f69bac345f5ccf1707b 237 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 6 152 7.6E-48 T 10-10-2018 IPR023370 YaeB-like, N-terminal domain VF_0683 1c009f75740c5f69bac345f5ccf1707b 237 Gene3D G3DSA:3.30.2310.10 150 233 9.6E-16 T 10-10-2018 VF_0683 1c009f75740c5f69bac345f5ccf1707b 237 SUPERFAMILY SSF118196 5 232 2.09E-78 T 10-10-2018 IPR036413 YaeB-like superfamily VF_0683 1c009f75740c5f69bac345f5ccf1707b 237 Pfam PF01980 Uncharacterised protein family UPF0066 25 147 9.6E-38 T 10-10-2018 IPR023370 YaeB-like, N-terminal domain VF_0683 1c009f75740c5f69bac345f5ccf1707b 237 Gene3D G3DSA:2.40.30.70 28 149 7.3E-45 T 10-10-2018 IPR036414 YaeB, N-terminal domain superfamily VF_0683 1c009f75740c5f69bac345f5ccf1707b 237 ProSitePatterns PS01318 TsaA-like domain signature. 91 102 - T 10-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site VF_1696 7dad06907ea66c5495b2588629931ac4 262 Gene3D G3DSA:3.30.70.580 1 104 4.9E-39 T 10-10-2018 VF_1696 7dad06907ea66c5495b2588629931ac4 262 PIRSF PIRSF001430 1 251 1.4E-76 T 10-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1696 7dad06907ea66c5495b2588629931ac4 262 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 238 3.5E-76 T 10-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1696 7dad06907ea66c5495b2588629931ac4 262 Gene3D G3DSA:3.30.70.660 105 242 7.1E-51 T 10-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 VF_1696 7dad06907ea66c5495b2588629931ac4 262 SUPERFAMILY SSF55120 1 255 1.58E-93 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1696 7dad06907ea66c5495b2588629931ac4 262 Pfam PF01416 tRNA pseudouridine synthase 144 244 5.9E-30 T 10-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1696 7dad06907ea66c5495b2588629931ac4 262 Pfam PF01416 tRNA pseudouridine synthase 6 102 3.7E-10 T 10-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1696 7dad06907ea66c5495b2588629931ac4 262 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 243 35.496 T 10-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0946 4c7bb48956d6410c89012e7da1c33d44 256 Pfam PF05618 Putative ATP-dependant zinc protease 117 256 3.8E-43 T 10-10-2018 VF_0946 4c7bb48956d6410c89012e7da1c33d44 256 SUPERFAMILY SSF50630 117 253 2.4E-39 T 10-10-2018 IPR021109 Aspartic peptidase domain superfamily VF_0946 4c7bb48956d6410c89012e7da1c33d44 256 Gene3D G3DSA:2.40.70.10 114 246 4.8E-41 T 10-10-2018 IPR021109 Aspartic peptidase domain superfamily VF_0405 b0199e495ca4bde5fe56b54bfa9011d8 154 Gene3D G3DSA:3.30.70.140 1 100 4.7E-35 T 10-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily VF_0405 b0199e495ca4bde5fe56b54bfa9011d8 154 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 102 149 1.2E-19 T 10-10-2018 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal VF_0405 b0199e495ca4bde5fe56b54bfa9011d8 154 Hamap MF_00002 Aspartate carbamoyltransferase regulatory chain [pyrI]. 4 152 33.037 T 10-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 VF_0405 b0199e495ca4bde5fe56b54bfa9011d8 154 SUPERFAMILY SSF54893 2 100 5.23E-34 T 10-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily VF_0405 b0199e495ca4bde5fe56b54bfa9011d8 154 SUPERFAMILY SSF57825 101 151 1.14E-16 T 10-10-2018 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily VF_0405 b0199e495ca4bde5fe56b54bfa9011d8 154 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 9 94 1.0E-43 T 10-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal VF_0405 b0199e495ca4bde5fe56b54bfa9011d8 154 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 7 95 1.1E-29 T 10-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal VF_0405 b0199e495ca4bde5fe56b54bfa9011d8 154 TIGRFAM TIGR00240 ATCase_reg: aspartate carbamoyltransferase, regulatory subunit 5 150 2.0E-59 T 10-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 VF_0405 b0199e495ca4bde5fe56b54bfa9011d8 154 Gene3D G3DSA:2.30.30.20 101 152 2.6E-24 T 10-10-2018 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 Pfam PF13432 Tetratricopeptide repeat 390 440 2.8E-5 T 10-10-2018 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 Pfam PF13432 Tetratricopeptide repeat 308 358 0.001 T 10-10-2018 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 SMART SM00028 331 364 0.01 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 SMART SM00028 86 119 76.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 SMART SM00028 413 446 1.3 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 SMART SM00028 379 412 1.2 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 Gene3D G3DSA:1.25.40.10 300 377 5.0E-8 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 Pfam PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) 916 1223 5.0E-89 T 10-10-2018 IPR008410 Cellulose synthase operon C, C-terminal GO:0019867|GO:0030244 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 SUPERFAMILY SSF48452 378 659 5.38E-9 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 Gene3D G3DSA:1.25.40.10 44 164 9.2E-6 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 Gene3D G3DSA:1.25.40.10 489 797 4.5E-9 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 Gene3D G3DSA:1.25.40.10 378 455 5.7E-11 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 SUPERFAMILY SSF48452 301 449 6.26E-18 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 PRINTS PR01441 Cellulose synthase subunit C signature 1107 1131 7.0E-6 T 10-10-2018 IPR003921 Cellulose synthase, subunit C GO:0006011|GO:0016020 VF_A0881 e882340c3b5d3f1fa33708b05ff0b5ad 1244 PRINTS PR01441 Cellulose synthase subunit C signature 436 456 7.0E-6 T 10-10-2018 IPR003921 Cellulose synthase, subunit C GO:0006011|GO:0016020 VF_A0209 bb1b33134e8364a964a46e338bbbce7c 466 Gene3D G3DSA:2.60.120.600 309 466 4.3E-45 T 10-10-2018 IPR037049 Domain of unknown function DUF1214, C-terminal domain superfamily VF_A0209 bb1b33134e8364a964a46e338bbbce7c 466 Pfam PF06863 Protein of unknown function (DUF1254) 75 209 5.9E-33 T 10-10-2018 IPR010679 Domain of unknown function DUF1254 VF_A0209 bb1b33134e8364a964a46e338bbbce7c 466 Gene3D G3DSA:2.60.40.1610 79 228 1.9E-25 T 10-10-2018 IPR037050 Domain of unknown function DUF1254 superfamily VF_A0209 bb1b33134e8364a964a46e338bbbce7c 466 Gene3D G3DSA:1.10.3360.10 229 290 1.9E-25 T 10-10-2018 IPR023289 VPA0735-like domain superfamily VF_A0209 bb1b33134e8364a964a46e338bbbce7c 466 Pfam PF06742 Protein of unknown function (DUF1214) 344 451 2.2E-34 T 10-10-2018 IPR010621 Domain of unknown function DUF1214 VF_A0209 bb1b33134e8364a964a46e338bbbce7c 466 SUPERFAMILY SSF160935 7 464 7.06E-118 T 10-10-2018 VF_A0686 7536c989414a821172b2cadc886d856e 663 Gene3D G3DSA:3.40.50.920 537 663 1.5E-45 T 10-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VF_A0686 7536c989414a821172b2cadc886d856e 663 Pfam PF02779 Transketolase, pyrimidine binding domain 353 523 8.4E-48 T 10-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VF_A0686 7536c989414a821172b2cadc886d856e 663 TIGRFAM TIGR00232 tktlase_bact: transketolase 4 662 0.0 T 10-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 VF_A0686 7536c989414a821172b2cadc886d856e 663 SUPERFAMILY SSF52518 6 319 3.48E-120 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_A0686 7536c989414a821172b2cadc886d856e 663 SUPERFAMILY SSF52518 332 525 1.07E-68 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_A0686 7536c989414a821172b2cadc886d856e 663 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 3 332 1.2E-166 T 10-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VF_A0686 7536c989414a821172b2cadc886d856e 663 Pfam PF02780 Transketolase, C-terminal domain 539 654 5.5E-20 T 10-10-2018 IPR033248 Transketolase, C-terminal domain VF_A0686 7536c989414a821172b2cadc886d856e 663 ProSitePatterns PS00802 Transketolase signature 2. 466 482 - T 10-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VF_A0686 7536c989414a821172b2cadc886d856e 663 Gene3D G3DSA:3.40.50.970 2 324 1.8E-131 T 10-10-2018 VF_A0686 7536c989414a821172b2cadc886d856e 663 ProSitePatterns PS00801 Transketolase signature 1. 11 31 - T 10-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VF_A0686 7536c989414a821172b2cadc886d856e 663 SMART SM00861 353 524 1.3E-67 T 10-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VF_A0686 7536c989414a821172b2cadc886d856e 663 SUPERFAMILY SSF52922 532 663 2.62E-45 T 10-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VF_A0686 7536c989414a821172b2cadc886d856e 663 Gene3D G3DSA:3.40.50.970 325 536 4.0E-85 T 10-10-2018 VF_A0338 8bef825a0cb2cee1d676eb2c0aabe401 792 Pfam PF01204 Trehalase 422 761 3.4E-10 T 10-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 VF_A0338 8bef825a0cb2cee1d676eb2c0aabe401 792 Gene3D G3DSA:3.30.1390.40 488 519 3.3E-258 T 10-10-2018 VF_A0338 8bef825a0cb2cee1d676eb2c0aabe401 792 Gene3D G3DSA:1.10.287.100 264 302 2.6E-18 T 10-10-2018 VF_A0338 8bef825a0cb2cee1d676eb2c0aabe401 792 Gene3D G3DSA:1.50.10.10 309 787 3.3E-258 T 10-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 VF_A0338 8bef825a0cb2cee1d676eb2c0aabe401 792 Gene3D G3DSA:2.70.98.50 32 263 2.2E-94 T 10-10-2018 VF_A0338 8bef825a0cb2cee1d676eb2c0aabe401 792 SUPERFAMILY SSF48208 278 787 1.11E-82 T 10-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 VF_A0154 c30a6ec3f2d2a593b171eb2e44757b2d 462 Gene3D G3DSA:3.40.50.300 212 391 1.0E-48 T 10-10-2018 VF_A0154 c30a6ec3f2d2a593b171eb2e44757b2d 462 Gene3D G3DSA:3.30.70.330 392 461 4.3E-22 T 10-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VF_A0154 c30a6ec3f2d2a593b171eb2e44757b2d 462 Pfam PF00271 Helicase conserved C-terminal domain 231 338 1.2E-26 T 10-10-2018 IPR001650 Helicase, C-terminal VF_A0154 c30a6ec3f2d2a593b171eb2e44757b2d 462 SMART SM00490 257 338 3.3E-29 T 10-10-2018 IPR001650 Helicase, C-terminal VF_A0154 c30a6ec3f2d2a593b171eb2e44757b2d 462 SUPERFAMILY SSF52540 73 359 1.42E-70 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0154 c30a6ec3f2d2a593b171eb2e44757b2d 462 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 10-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VF_A0154 c30a6ec3f2d2a593b171eb2e44757b2d 462 Gene3D G3DSA:3.40.50.300 2 208 2.5E-71 T 10-10-2018 VF_A0154 c30a6ec3f2d2a593b171eb2e44757b2d 462 Pfam PF03880 DbpA RNA binding domain 388 458 1.6E-23 T 10-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain VF_A0154 c30a6ec3f2d2a593b171eb2e44757b2d 462 Pfam PF00270 DEAD/DEAH box helicase 28 194 1.7E-44 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_A0154 c30a6ec3f2d2a593b171eb2e44757b2d 462 SMART SM00487 23 220 1.0E-56 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_0095 96b1cf1cb67079c0b70b17042455c166 467 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 432 449 2.2E-7 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_0095 96b1cf1cb67079c0b70b17042455c166 467 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 449 467 2.2E-7 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_0095 96b1cf1cb67079c0b70b17042455c166 467 SUPERFAMILY SSF52172 2 187 2.42E-43 T 10-10-2018 IPR011006 CheY-like superfamily VF_0095 96b1cf1cb67079c0b70b17042455c166 467 Pfam PF00072 Response regulator receiver domain 6 115 5.3E-29 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_0095 96b1cf1cb67079c0b70b17042455c166 467 Gene3D G3DSA:3.40.50.2300 1 124 4.3E-40 T 10-10-2018 VF_0095 96b1cf1cb67079c0b70b17042455c166 467 Gene3D G3DSA:1.10.8.60 314 384 9.4E-20 T 10-10-2018 VF_0095 96b1cf1cb67079c0b70b17042455c166 467 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 466 1.4E-236 T 10-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 VF_0095 96b1cf1cb67079c0b70b17042455c166 467 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 228 243 - T 10-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VF_0095 96b1cf1cb67079c0b70b17042455c166 467 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 166 179 - T 10-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VF_0095 96b1cf1cb67079c0b70b17042455c166 467 SMART SM00382 162 305 1.6E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0095 96b1cf1cb67079c0b70b17042455c166 467 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 355 364 - T 10-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VF_0095 96b1cf1cb67079c0b70b17042455c166 467 SUPERFAMILY SSF52540 141 385 1.02E-73 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0095 96b1cf1cb67079c0b70b17042455c166 467 Gene3D G3DSA:3.40.50.300 126 313 1.3E-66 T 10-10-2018 VF_0095 96b1cf1cb67079c0b70b17042455c166 467 Gene3D G3DSA:1.10.10.60 385 467 7.8E-26 T 10-10-2018 VF_0095 96b1cf1cb67079c0b70b17042455c166 467 Pfam PF02954 Bacterial regulatory protein, Fis family 427 466 3.5E-14 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_0095 96b1cf1cb67079c0b70b17042455c166 467 SUPERFAMILY SSF46689 382 466 1.21E-19 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_0095 96b1cf1cb67079c0b70b17042455c166 467 Pfam PF00158 Sigma-54 interaction domain 142 308 2.3E-70 T 10-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VF_0095 96b1cf1cb67079c0b70b17042455c166 467 SMART SM00448 4 115 1.4E-31 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_2330 999e486e830dccad2a995a497b4d09e1 354 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 75 335 2.5E-86 T 10-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 VF_2330 999e486e830dccad2a995a497b4d09e1 354 Gene3D G3DSA:1.10.40.50 277 351 5.4E-24 T 10-10-2018 VF_2330 999e486e830dccad2a995a497b4d09e1 354 Pfam PF03193 RsgA GTPase 100 277 4.0E-56 T 10-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 VF_2330 999e486e830dccad2a995a497b4d09e1 354 SUPERFAMILY SSF52540 114 339 1.57E-56 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2330 999e486e830dccad2a995a497b4d09e1 354 Gene3D G3DSA:2.40.50.140 36 102 4.0E-21 T 10-10-2018 VF_2330 999e486e830dccad2a995a497b4d09e1 354 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 41 341 37.126 T 10-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 VF_2330 999e486e830dccad2a995a497b4d09e1 354 Gene3D G3DSA:3.40.50.300 103 276 9.6E-48 T 10-10-2018 VF_0081 c703195547f165908fb7561ccd66fa35 153 Pfam PF01037 Lrp/AsnC ligand binding domain 81 144 1.7E-15 T 10-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VF_0081 c703195547f165908fb7561ccd66fa35 153 Gene3D G3DSA:3.30.70.920 59 141 3.7E-31 T 10-10-2018 VF_0081 c703195547f165908fb7561ccd66fa35 153 Pfam PF13404 AsnC-type helix-turn-helix domain 7 48 9.6E-15 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VF_0081 c703195547f165908fb7561ccd66fa35 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 2.9E-10 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VF_0081 c703195547f165908fb7561ccd66fa35 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 2.9E-10 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VF_0081 c703195547f165908fb7561ccd66fa35 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 2.9E-10 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VF_0081 c703195547f165908fb7561ccd66fa35 153 SMART SM00344 7 114 1.4E-38 T 10-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VF_0081 c703195547f165908fb7561ccd66fa35 153 SUPERFAMILY SSF46785 6 67 3.21E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0081 c703195547f165908fb7561ccd66fa35 153 SUPERFAMILY SSF54909 68 153 3.49E-18 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel VF_0081 c703195547f165908fb7561ccd66fa35 153 Gene3D G3DSA:1.10.10.10 3 58 3.4E-22 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0276 7d1494a8caf70703100e63f4c8f5fb55 311 SUPERFAMILY SSF51735 1 145 2.55E-39 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0276 7d1494a8caf70703100e63f4c8f5fb55 311 SUPERFAMILY SSF56327 146 310 1.7E-42 T 10-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 VF_0276 7d1494a8caf70703100e63f4c8f5fb55 311 Hamap MF_01516 Malate dehydrogenase [mdh]. 1 311 58.06 T 10-10-2018 IPR023958 Malate dehydrogenase, type 1, bacterial GO:0006099|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 VF_0276 7d1494a8caf70703100e63f4c8f5fb55 311 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 145 5.0E-47 T 10-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 VF_0276 7d1494a8caf70703100e63f4c8f5fb55 311 Gene3D G3DSA:3.40.50.720 1 146 5.1E-65 T 10-10-2018 VF_0276 7d1494a8caf70703100e63f4c8f5fb55 311 PIRSF PIRSF000102 1 309 7.3E-60 T 10-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 VF_0276 7d1494a8caf70703100e63f4c8f5fb55 311 ProSitePatterns PS00068 Malate dehydrogenase active site signature. 146 158 - T 10-10-2018 IPR001252 Malate dehydrogenase, active site GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263 VF_0276 7d1494a8caf70703100e63f4c8f5fb55 311 Gene3D G3DSA:3.90.110.10 147 311 6.0E-54 T 10-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 VF_0276 7d1494a8caf70703100e63f4c8f5fb55 311 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 310 5.5E-50 T 10-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 VF_0276 7d1494a8caf70703100e63f4c8f5fb55 311 TIGRFAM TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 2 311 3.3E-132 T 10-10-2018 IPR010097 Malate dehydrogenase, type 1 GO:0006099|GO:0030060 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263|Reactome: R-HSA-71403 VF_2115 0cd72d8a68032d17750eec89cd1e1a68 125 Pfam PF01228 Glycine radical 16 106 1.6E-22 T 10-10-2018 IPR001150 Glycine radical domain GO:0003824 VF_2115 0cd72d8a68032d17750eec89cd1e1a68 125 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 2 125 4.3E-67 T 10-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA VF_2115 0cd72d8a68032d17750eec89cd1e1a68 125 SUPERFAMILY SSF51998 63 124 4.58E-24 T 10-10-2018 VF_2115 0cd72d8a68032d17750eec89cd1e1a68 125 ProSitePatterns PS00850 Glycine radical domain signature. 95 103 - T 10-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site VF_2115 0cd72d8a68032d17750eec89cd1e1a68 125 Hamap MF_00806 Autonomous glycyl radical cofactor [grcA]. 1 125 41.346 T 10-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA VF_2115 0cd72d8a68032d17750eec89cd1e1a68 125 PIRSF PIRSF000378 2 125 1.5E-53 T 10-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA VF_2115 0cd72d8a68032d17750eec89cd1e1a68 125 Gene3D G3DSA:3.20.70.20 14 125 2.1E-25 T 10-10-2018 VF_1786 006063fce8da7d90888241c7eea7da9b 456 ProSitePatterns PS00163 Fumarate lyases signature. 295 304 - T 10-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 VF_1786 006063fce8da7d90888241c7eea7da9b 456 Gene3D G3DSA:1.20.200.10 118 447 1.3E-158 T 10-10-2018 VF_1786 006063fce8da7d90888241c7eea7da9b 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 5.2E-19 T 10-10-2018 IPR000362 Fumarate lyase family VF_1786 006063fce8da7d90888241c7eea7da9b 456 PRINTS PR00149 Fumarate lyase superfamily signature 252 279 5.2E-19 T 10-10-2018 IPR000362 Fumarate lyase family VF_1786 006063fce8da7d90888241c7eea7da9b 456 PRINTS PR00149 Fumarate lyase superfamily signature 295 311 5.2E-19 T 10-10-2018 IPR000362 Fumarate lyase family VF_1786 006063fce8da7d90888241c7eea7da9b 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 5.2E-19 T 10-10-2018 IPR000362 Fumarate lyase family VF_1786 006063fce8da7d90888241c7eea7da9b 456 SUPERFAMILY SSF48557 4 448 4.56E-109 T 10-10-2018 IPR008948 L-Aspartase-like GO:0003824 VF_1786 006063fce8da7d90888241c7eea7da9b 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 456 1.4E-150 T 10-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VF_1786 006063fce8da7d90888241c7eea7da9b 456 Gene3D G3DSA:1.10.40.30 383 446 1.3E-158 T 10-10-2018 VF_1786 006063fce8da7d90888241c7eea7da9b 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 332 446 2.1E-51 T 10-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 VF_1786 006063fce8da7d90888241c7eea7da9b 456 Pfam PF00206 Lyase 14 313 8.9E-73 T 10-10-2018 IPR022761 Fumarate lyase, N-terminal VF_1786 006063fce8da7d90888241c7eea7da9b 456 Gene3D G3DSA:1.10.275.10 1 117 4.3E-49 T 10-10-2018 IPR024083 Fumarase/histidase, N-terminal VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Gene3D G3DSA:2.40.50.100 1151 1215 6.9E-62 T 10-10-2018 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Gene3D G3DSA:1.10.150.390 1316 1377 4.6E-29 T 10-10-2018 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Gene3D G3DSA:2.40.50.100 1023 1126 4.1E-30 T 10-10-2018 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Gene3D G3DSA:1.10.274.100 490 640 5.3E-39 T 10-10-2018 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Gene3D G3DSA:1.10.1790.20 1135 1314 6.9E-62 T 10-10-2018 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 391 9.5E-8 T 10-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Pfam PF00623 RNA polymerase Rpb1, domain 2 391 485 1.6E-27 T 10-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1315 2.7E-78 T 10-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 342 5.1E-89 T 10-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 3.3E-19 T 10-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 SUPERFAMILY SSF64484 16 1364 0.0 T 10-10-2018 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 2.6E-26 T 10-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Gene3D G3DSA:1.10.40.90 374 416 2.0E-21 T 10-10-2018 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 SMART SM00663 235 514 8.5E-185 T 10-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Gene3D G3DSA:1.10.132.30 641 790 8.3E-66 T 10-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Gene3D G3DSA:2.40.50.100 948 1022 6.6E-25 T 10-10-2018 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 10 1377 18.924 T 10-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_2412 39480bc66e79d974232eae324eefe2c5 1401 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1367 0.0 T 10-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_A0282 e613208633bdd205ec57842dd12c7b26 156 Pfam PF13353 4Fe-4S single cluster domain 12 151 9.1E-53 T 10-10-2018 VF_A0282 e613208633bdd205ec57842dd12c7b26 156 PIRSF PIRSF000368 1 155 3.1E-59 T 10-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 VF_A0282 e613208633bdd205ec57842dd12c7b26 156 TIGRFAM TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein 2 152 3.0E-59 T 10-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 VF_A0282 e613208633bdd205ec57842dd12c7b26 156 SUPERFAMILY SSF102114 23 120 1.12E-7 T 10-10-2018 VF_A0282 e613208633bdd205ec57842dd12c7b26 156 ProSitePatterns PS01087 Radical activating enzymes signature. 14 35 - T 10-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 VF_A0282 e613208633bdd205ec57842dd12c7b26 156 Gene3D G3DSA:3.20.20.70 2 156 2.4E-23 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0072 880f4667200c2dd919b5c6049a3ebbcf 454 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 418 4.4E-151 T 10-10-2018 VF_0072 880f4667200c2dd919b5c6049a3ebbcf 454 SUPERFAMILY SSF103473 19 450 2.09E-86 T 10-10-2018 IPR036259 MFS transporter superfamily VF_0072 880f4667200c2dd919b5c6049a3ebbcf 454 Pfam PF07690 Major Facilitator Superfamily 34 401 4.0E-49 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_0072 880f4667200c2dd919b5c6049a3ebbcf 454 PIRSF PIRSF002808 5 453 2.6E-169 T 10-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 VF_0072 880f4667200c2dd919b5c6049a3ebbcf 454 Gene3D G3DSA:1.20.1250.20 18 227 1.4E-58 T 10-10-2018 VF_0072 880f4667200c2dd919b5c6049a3ebbcf 454 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 10-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 VF_0072 880f4667200c2dd919b5c6049a3ebbcf 454 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 441 1.4E-236 T 10-10-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 VF_0072 880f4667200c2dd919b5c6049a3ebbcf 454 Gene3D G3DSA:1.20.1250.20 241 452 5.8E-64 T 10-10-2018 VF_0930 cfb572ada1aa47fc9e9912abdc85b181 227 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 6 209 5.2E-88 T 10-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 VF_0930 cfb572ada1aa47fc9e9912abdc85b181 227 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 1 210 28.394 T 10-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 VF_0930 cfb572ada1aa47fc9e9912abdc85b181 227 Pfam PF02508 Rnf-Nqr subunit, membrane protein 6 200 2.2E-66 T 10-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VF_0930 cfb572ada1aa47fc9e9912abdc85b181 227 PIRSF PIRSF006102 1 219 2.1E-80 T 10-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VF_A0712 b711ecbe879b14feef425bb2494d6aba 99 SUPERFAMILY SSF52794 2 97 1.43E-34 T 10-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VF_A0712 b711ecbe879b14feef425bb2494d6aba 99 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 4 77 2.4E-31 T 10-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 VF_A0712 b711ecbe879b14feef425bb2494d6aba 99 Gene3D G3DSA:3.40.50.2300 1 98 3.9E-37 T 10-10-2018 VF_A0712 b711ecbe879b14feef425bb2494d6aba 99 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 96 1.0E-18 T 10-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VF_0259 2622d7c4b639417710cfdfb7688920be 118 Gene3D G3DSA:1.10.8.50 1 71 5.1E-26 T 10-10-2018 VF_0259 2622d7c4b639417710cfdfb7688920be 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.578 T 10-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0259 2622d7c4b639417710cfdfb7688920be 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 10-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0259 2622d7c4b639417710cfdfb7688920be 118 SUPERFAMILY SSF46946 2 114 1.0E-44 T 10-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 VF_0259 2622d7c4b639417710cfdfb7688920be 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 3.2E-31 T 10-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0259 2622d7c4b639417710cfdfb7688920be 118 PIRSF PIRSF002134 1 118 2.7E-40 T 10-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0259 2622d7c4b639417710cfdfb7688920be 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 8.7E-53 T 10-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0259 2622d7c4b639417710cfdfb7688920be 118 Gene3D G3DSA:4.10.910.10 72 118 1.3E-26 T 10-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_1509 78aa521e236e81eeb9b7840e9fd4b49e 378 PIRSF PIRSF001238 1 378 2.4E-148 T 10-10-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 VF_1509 78aa521e236e81eeb9b7840e9fd4b49e 378 Pfam PF01979 Amidohydrolase family 52 365 3.7E-15 T 10-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VF_1509 78aa521e236e81eeb9b7840e9fd4b49e 378 SUPERFAMILY SSF51556 56 334 5.45E-71 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_1509 78aa521e236e81eeb9b7840e9fd4b49e 378 Gene3D G3DSA:3.20.20.140 57 333 3.5E-139 T 10-10-2018 VF_1509 78aa521e236e81eeb9b7840e9fd4b49e 378 TIGRFAM TIGR01975 isoAsp_dipep: beta-aspartyl peptidase 2 378 2.1E-115 T 10-10-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 VF_1509 78aa521e236e81eeb9b7840e9fd4b49e 378 Gene3D G3DSA:2.30.40.10 4 378 3.5E-139 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_1509 78aa521e236e81eeb9b7840e9fd4b49e 378 SUPERFAMILY SSF51338 1 376 4.32E-21 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_1549 4e2c794617131fea0efd207d75d46b93 175 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 10 170 6.2E-49 T 10-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 VF_1549 4e2c794617131fea0efd207d75d46b93 175 Gene3D G3DSA:3.40.30.10 23 174 1.9E-38 T 10-10-2018 VF_1549 4e2c794617131fea0efd207d75d46b93 175 SUPERFAMILY SSF52833 42 170 2.09E-33 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1549 4e2c794617131fea0efd207d75d46b93 175 Pfam PF08534 Redoxin 37 161 1.0E-17 T 10-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 VF_A0573 60006088080efbaf22ce2c876837a8be 103 SUPERFAMILY SSF55159 3 99 2.09E-27 T 10-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 VF_A0573 60006088080efbaf22ce2c876837a8be 103 Pfam PF01253 Translation initiation factor SUI1 27 95 2.6E-20 T 10-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 VF_A0573 60006088080efbaf22ce2c876837a8be 103 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 3 103 3.9E-38 T 10-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 VF_A0573 60006088080efbaf22ce2c876837a8be 103 PIRSF PIRSF037511 1 103 5.4E-34 T 10-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 VF_A0573 60006088080efbaf22ce2c876837a8be 103 Gene3D G3DSA:3.30.780.10 23 103 1.5E-32 T 10-10-2018 VF_1203 9d286357d364143339815b94b581a1df 234 Gene3D G3DSA:3.40.50.150 11 233 1.0E-76 T 10-10-2018 VF_1203 9d286357d364143339815b94b581a1df 234 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 11 229 5.7E-88 T 10-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 VF_1203 9d286357d364143339815b94b581a1df 234 Pfam PF13489 Methyltransferase domain 52 198 1.0E-26 T 10-10-2018 VF_1203 9d286357d364143339815b94b581a1df 234 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 11 233 35.995 T 10-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 VF_1203 9d286357d364143339815b94b581a1df 234 SUPERFAMILY SSF53335 15 215 2.23E-45 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_A0698 d19cc8ca991a44a20cc77e7e12ce16eb 298 Gene3D G3DSA:3.40.50.2300 160 295 4.5E-26 T 10-10-2018 VF_A0698 d19cc8ca991a44a20cc77e7e12ce16eb 298 Gene3D G3DSA:2.40.50.180 28 143 1.1E-24 T 10-10-2018 VF_A0698 d19cc8ca991a44a20cc77e7e12ce16eb 298 SMART SM00260 8 144 7.6E-18 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VF_A0698 d19cc8ca991a44a20cc77e7e12ce16eb 298 SUPERFAMILY SSF52172 167 289 5.98E-25 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0698 d19cc8ca991a44a20cc77e7e12ce16eb 298 SUPERFAMILY SSF50341 8 148 1.83E-30 T 10-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VF_A0698 d19cc8ca991a44a20cc77e7e12ce16eb 298 Pfam PF00072 Response regulator receiver domain 172 286 4.2E-17 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0698 d19cc8ca991a44a20cc77e7e12ce16eb 298 Gene3D G3DSA:2.30.30.40 19 138 1.1E-24 T 10-10-2018 VF_A0698 d19cc8ca991a44a20cc77e7e12ce16eb 298 SMART SM00448 170 287 7.4E-19 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0698 d19cc8ca991a44a20cc77e7e12ce16eb 298 PIRSF PIRSF002867 1 295 3.5E-84 T 10-10-2018 IPR024181 Chemotaxis response regulator CheV VF_A0698 d19cc8ca991a44a20cc77e7e12ce16eb 298 Pfam PF01584 CheW-like domain 11 146 8.5E-29 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VF_A0606 6184de2149aab57f1d79498a7903dc76 102 ProDom PD030876 UPF0265 YEEX HELIX ALPHA BFL460 UNCHARACTERIZED FN0411 HI1168 VPA1226 BCR 1 96 1.0E-40 T 10-10-2018 IPR007458 Protein of unknown function DUF496 VF_A0606 6184de2149aab57f1d79498a7903dc76 102 Pfam PF04363 Protein of unknown function (DUF496) 1 92 1.6E-42 T 10-10-2018 IPR007458 Protein of unknown function DUF496 VF_A0606 6184de2149aab57f1d79498a7903dc76 102 PIRSF PIRSF028773 1 102 2.2E-47 T 10-10-2018 IPR007458 Protein of unknown function DUF496 VF_A0606 6184de2149aab57f1d79498a7903dc76 102 Hamap MF_00683 UPF0265 protein YeeX [yeeX]. 1 95 23.2 T 10-10-2018 IPR007458 Protein of unknown function DUF496 VF_0577 4e6082c2d82b091d5c5d230721508e7a 96 Gene3D G3DSA:1.10.10.710 21 94 1.1E-8 T 10-10-2018 IPR038627 YebG-like superfamily VF_0577 4e6082c2d82b091d5c5d230721508e7a 96 Pfam PF07130 YebG protein 1 72 9.4E-32 T 10-10-2018 IPR009813 Uncharacterised protein family YebG VF_0889 76bdd19df6db5112520df4dd84fd78e3 560 Gene3D G3DSA:3.30.70.1450 229 291 1.0E-10 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_0889 76bdd19df6db5112520df4dd84fd78e3 560 Pfam PF02080 TrkA-C domain 232 287 2.7E-9 T 10-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VF_0889 76bdd19df6db5112520df4dd84fd78e3 560 Pfam PF02080 TrkA-C domain 309 374 1.1E-7 T 10-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VF_0889 76bdd19df6db5112520df4dd84fd78e3 560 SUPERFAMILY SSF116726 294 377 1.7E-10 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_0889 76bdd19df6db5112520df4dd84fd78e3 560 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 21 172 8.6E-24 T 10-10-2018 IPR006512 YidE/YbjL duplication VF_0889 76bdd19df6db5112520df4dd84fd78e3 560 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 393 544 8.2E-38 T 10-10-2018 IPR006512 YidE/YbjL duplication VF_0889 76bdd19df6db5112520df4dd84fd78e3 560 Gene3D G3DSA:3.30.70.1450 295 372 1.5E-5 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_0889 76bdd19df6db5112520df4dd84fd78e3 560 SUPERFAMILY SSF116726 231 287 1.7E-10 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_0889 76bdd19df6db5112520df4dd84fd78e3 560 Pfam PF06826 Predicted Permease Membrane Region 389 557 8.0E-41 T 10-10-2018 IPR006512 YidE/YbjL duplication VF_0889 76bdd19df6db5112520df4dd84fd78e3 560 Pfam PF06826 Predicted Permease Membrane Region 17 185 6.7E-30 T 10-10-2018 IPR006512 YidE/YbjL duplication VF_0249 dba84c684f08df498c2676ad22f311a8 178 PIRSF PIRSF002161 1 177 1.8E-66 T 10-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0249 dba84c684f08df498c2676ad22f311a8 178 SUPERFAMILY SSF55282 4 177 1.11E-77 T 10-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0249 dba84c684f08df498c2676ad22f311a8 178 Gene3D G3DSA:3.30.1440.10 1 178 1.8E-79 T 10-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0249 dba84c684f08df498c2676ad22f311a8 178 Pfam PF00673 ribosomal L5P family C-terminus 84 176 9.8E-41 T 10-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0249 dba84c684f08df498c2676ad22f311a8 178 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 10-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0249 dba84c684f08df498c2676ad22f311a8 178 Pfam PF00281 Ribosomal protein L5 24 80 5.1E-28 T 10-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0249 dba84c684f08df498c2676ad22f311a8 178 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 178 42.823 T 10-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_A0290 087f14bf127b9b2b480ce836fe923360 245 Pfam PF13531 Bacterial extracellular solute-binding protein 21 241 1.0E-50 T 10-10-2018 VF_A0290 087f14bf127b9b2b480ce836fe923360 245 SUPERFAMILY SSF53850 20 243 2.03E-65 T 10-10-2018 VF_A0290 087f14bf127b9b2b480ce836fe923360 245 Gene3D G3DSA:3.40.190.10 22 241 1.8E-72 T 10-10-2018 VF_A0290 087f14bf127b9b2b480ce836fe923360 245 PIRSF PIRSF004846 2 245 9.6E-67 T 10-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 VF_A0290 087f14bf127b9b2b480ce836fe923360 245 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 26 240 7.7E-63 T 10-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 VF_A0290 087f14bf127b9b2b480ce836fe923360 245 Gene3D G3DSA:3.40.190.10 99 205 1.8E-72 T 10-10-2018 VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 Pfam PF00381 PTS HPr component phosphorylation site 293 371 6.5E-25 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 10-10-2018 IPR002178 PTS EIIA type-2 domain VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 300 307 - T 10-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 Gene3D G3DSA:3.30.1340.10 289 376 2.9E-26 T 10-10-2018 IPR035895 HPr-like superfamily VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 Gene3D G3DSA:3.40.930.10 146 275 1.7E-7 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 SUPERFAMILY SSF55804 149 274 4.53E-17 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 SUPERFAMILY SSF55804 4 141 3.66E-39 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 SUPERFAMILY SSF55594 292 377 2.09E-23 T 10-10-2018 IPR035895 HPr-like superfamily VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 PRINTS PR00107 Phosphocarrier protein signature 343 360 5.8E-18 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 PRINTS PR00107 Phosphocarrier protein signature 328 343 5.8E-18 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 PRINTS PR00107 Phosphocarrier protein signature 300 316 5.8E-18 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 Gene3D G3DSA:3.40.930.10 1 142 7.0E-41 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 293 371 2.7E-22 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 4 140 3.7E-32 T 10-10-2018 IPR002178 PTS EIIA type-2 domain VF_A0942 a870f911e3ce08a2bd835b5347d7a30e 378 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 153 271 1.5E-4 T 10-10-2018 IPR002178 PTS EIIA type-2 domain VF_1256 cc5d24d494851d4d1e4858d35aaabadb 330 ProSitePatterns PS00607 cAMP phosphodiesterases class-II signature. 104 118 - T 10-10-2018 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site GO:0008081 VF_1256 cc5d24d494851d4d1e4858d35aaabadb 330 Pfam PF02112 cAMP phosphodiesterases class-II 26 325 1.6E-57 T 10-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 VF_1256 cc5d24d494851d4d1e4858d35aaabadb 330 Gene3D G3DSA:3.60.15.10 27 316 6.5E-17 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VF_1256 cc5d24d494851d4d1e4858d35aaabadb 330 PIRSF PIRSF000962 1 330 2.0E-126 T 10-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 VF_1256 cc5d24d494851d4d1e4858d35aaabadb 330 SUPERFAMILY SSF56281 30 328 4.6E-21 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VF_1256 cc5d24d494851d4d1e4858d35aaabadb 330 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 256 269 2.0E-32 T 10-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 VF_1256 cc5d24d494851d4d1e4858d35aaabadb 330 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 127 148 2.0E-32 T 10-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 VF_1256 cc5d24d494851d4d1e4858d35aaabadb 330 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 237 248 2.0E-32 T 10-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 VF_1256 cc5d24d494851d4d1e4858d35aaabadb 330 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 100 118 2.0E-32 T 10-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 VF_1256 cc5d24d494851d4d1e4858d35aaabadb 330 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 281 292 2.0E-32 T 10-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 VF_0301 eb6b2021d25268bb5bcf72444567d88e 465 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 21 458 1.5E-176 T 10-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 VF_0301 eb6b2021d25268bb5bcf72444567d88e 465 SUPERFAMILY SSF52540 198 449 3.99E-52 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0301 eb6b2021d25268bb5bcf72444567d88e 465 SUPERFAMILY SSF48024 19 130 2.22E-37 T 10-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 VF_0301 eb6b2021d25268bb5bcf72444567d88e 465 Pfam PF03796 DnaB-like helicase C terminal domain 200 456 5.0E-114 T 10-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 VF_0301 eb6b2021d25268bb5bcf72444567d88e 465 Gene3D G3DSA:1.10.860.10 13 177 3.9E-53 T 10-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal VF_0301 eb6b2021d25268bb5bcf72444567d88e 465 Pfam PF00772 DnaB-like helicase N terminal domain 21 122 4.2E-35 T 10-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 VF_0301 eb6b2021d25268bb5bcf72444567d88e 465 Gene3D G3DSA:3.40.50.300 178 457 1.1E-106 T 10-10-2018 VF_1176 371922afc88b31f74326dae70e788beb 453 Pfam PF03315 Serine dehydratase beta chain 3 155 2.3E-53 T 10-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 VF_1176 371922afc88b31f74326dae70e788beb 453 Pfam PF03313 Serine dehydratase alpha chain 183 448 3.2E-98 T 10-10-2018 IPR005130 Serine dehydratase-like, alpha subunit VF_1176 371922afc88b31f74326dae70e788beb 453 SUPERFAMILY SSF143548 16 157 4.45E-43 T 10-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 VF_1176 371922afc88b31f74326dae70e788beb 453 Gene3D G3DSA:3.30.1330.90 10 159 1.6E-48 T 10-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 VF_1176 371922afc88b31f74326dae70e788beb 453 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 3.9E-225 T 10-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 SUPERFAMILY SSF52343 449 604 2.36E-50 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 Pfam PF00258 Flavodoxin 70 193 1.0E-27 T 10-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 10 604 1.4E-255 T 10-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 Gene3D G3DSA:2.40.30.10 237 444 4.7E-74 T 10-10-2018 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 Gene3D G3DSA:3.40.50.360 58 223 1.6E-45 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 Gene3D G3DSA:3.40.50.80 450 604 1.7E-59 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 Pfam PF00667 FAD binding domain 236 422 9.4E-29 T 10-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 SUPERFAMILY SSF52218 67 213 1.49E-45 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 Gene3D G3DSA:1.20.990.10 285 389 4.7E-74 T 10-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 391 398 3.2E-29 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 461 480 3.2E-29 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 424 433 3.2E-29 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 275 285 3.2E-29 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 553 561 3.2E-29 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 530 546 3.2E-29 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 486 495 3.2E-29 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 499 510 3.2E-29 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 Pfam PF00175 Oxidoreductase NAD-binding domain 462 568 1.3E-18 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 SUPERFAMILY SSF63380 233 450 1.85E-65 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 Hamap MF_01541 Sulfite reductase [NADPH] flavoprotein alpha-component [cysJ]. 2 604 48.905 T 10-10-2018 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 PIRSF PIRSF000207 1 604 1.1E-269 T 10-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 PRINTS PR00369 Flavodoxin signature 149 159 8.0E-8 T 10-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 PRINTS PR00369 Flavodoxin signature 69 82 8.0E-8 T 10-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 VF_0310 0c64fcc371ef26ed2da99236c4e9864a 604 PRINTS PR00369 Flavodoxin signature 117 128 8.0E-8 T 10-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 VF_A0265 3cf407413c20dad437909861d7dceb1d 418 Gene3D G3DSA:1.10.287.130 174 287 7.1E-12 T 10-10-2018 VF_A0265 3cf407413c20dad437909861d7dceb1d 418 Pfam PF00512 His Kinase A (phospho-acceptor) domain 224 285 1.4E-8 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0265 3cf407413c20dad437909861d7dceb1d 418 SUPERFAMILY SSF55874 294 403 1.64E-9 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0265 3cf407413c20dad437909861d7dceb1d 418 SUPERFAMILY SSF47384 206 285 2.16E-11 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_A0265 3cf407413c20dad437909861d7dceb1d 418 Gene3D G3DSA:3.30.565.10 294 416 1.5E-6 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0265 3cf407413c20dad437909861d7dceb1d 418 SMART SM00388 221 287 1.6E-9 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_1962 1fc676dd4addfd0591fded7487605628 242 SUPERFAMILY SSF52313 6 232 2.35E-95 T 10-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily VF_1962 1fc676dd4addfd0591fded7487605628 242 Pfam PF00318 Ribosomal protein S2 9 224 4.9E-93 T 10-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_1962 1fc676dd4addfd0591fded7487605628 242 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 10-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 VF_1962 1fc676dd4addfd0591fded7487605628 242 Gene3D G3DSA:3.40.50.10490 8 219 1.5E-92 T 10-10-2018 VF_1962 1fc676dd4addfd0591fded7487605628 242 PRINTS PR00395 Ribosomal protein S2 signature 37 46 6.3E-37 T 10-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_1962 1fc676dd4addfd0591fded7487605628 242 PRINTS PR00395 Ribosomal protein S2 signature 158 175 6.3E-37 T 10-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_1962 1fc676dd4addfd0591fded7487605628 242 PRINTS PR00395 Ribosomal protein S2 signature 175 186 6.3E-37 T 10-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_1962 1fc676dd4addfd0591fded7487605628 242 PRINTS PR00395 Ribosomal protein S2 signature 196 210 6.3E-37 T 10-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_1962 1fc676dd4addfd0591fded7487605628 242 PRINTS PR00395 Ribosomal protein S2 signature 6 24 6.3E-37 T 10-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_1962 1fc676dd4addfd0591fded7487605628 242 PRINTS PR00395 Ribosomal protein S2 signature 87 104 6.3E-37 T 10-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_1962 1fc676dd4addfd0591fded7487605628 242 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 40.899 T 10-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1962 1fc676dd4addfd0591fded7487605628 242 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 10-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 VF_1962 1fc676dd4addfd0591fded7487605628 242 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 2.6E-107 T 10-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1962 1fc676dd4addfd0591fded7487605628 242 Gene3D G3DSA:1.10.287.610 103 150 1.5E-92 T 10-10-2018 VF_0206 b9635b7b5fd292b4f07a1548f0597996 256 SUPERFAMILY SSF51351 2 251 2.49E-88 T 10-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0206 b9635b7b5fd292b4f07a1548f0597996 256 Pfam PF00121 Triosephosphate isomerase 5 247 1.3E-85 T 10-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0206 b9635b7b5fd292b4f07a1548f0597996 256 ProSitePatterns PS00171 Triosephosphate isomerase active site. 167 177 - T 10-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0206 b9635b7b5fd292b4f07a1548f0597996 256 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 241 1.1E-79 T 10-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0206 b9635b7b5fd292b4f07a1548f0597996 256 Gene3D G3DSA:3.20.20.70 1 256 5.6E-102 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0206 b9635b7b5fd292b4f07a1548f0597996 256 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 250 58.153 T 10-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_1624 ab944d50fc9f82441437a89bda615983 165 SUPERFAMILY SSF55021 88 163 6.25E-13 T 10-10-2018 VF_1624 ab944d50fc9f82441437a89bda615983 165 PIRSF PIRSF028103 1 165 1.2E-29 T 10-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 VF_1624 ab944d50fc9f82441437a89bda615983 165 Gene3D G3DSA:3.30.70.260 83 165 4.0E-13 T 10-10-2018 VF_1766 13da1c8e1d1864d8837883b76dc81c4a 106 Gene3D G3DSA:3.30.1390.10 1 106 1.2E-45 T 10-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like VF_1766 13da1c8e1d1864d8837883b76dc81c4a 106 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 24 102 9.4E-34 T 10-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 VF_1766 13da1c8e1d1864d8837883b76dc81c4a 106 SUPERFAMILY SSF54736 21 105 3.61E-33 T 10-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like VF_1766 13da1c8e1d1864d8837883b76dc81c4a 106 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 8 101 28.555 T 10-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS VF_0667 acca8b3f70f3b00728896ed71dc92611 291 Pfam PF00480 ROK family 5 289 3.5E-75 T 10-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VF_0667 acca8b3f70f3b00728896ed71dc92611 291 Gene3D G3DSA:3.30.420.40 119 271 8.9E-81 T 10-10-2018 VF_0667 acca8b3f70f3b00728896ed71dc92611 291 ProSitePatterns PS01125 ROK family signature. 129 156 - T 10-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VF_0667 acca8b3f70f3b00728896ed71dc92611 291 Gene3D G3DSA:3.30.420.40 7 283 8.9E-81 T 10-10-2018 VF_0667 acca8b3f70f3b00728896ed71dc92611 291 SUPERFAMILY SSF53067 3 288 1.11E-51 T 10-10-2018 VF_1791 7023547be077d8a004ac927ea52a39d6 295 SUPERFAMILY SSF52151 1 292 1.36E-49 T 10-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VF_1791 7023547be077d8a004ac927ea52a39d6 295 Pfam PF01734 Patatin-like phospholipase 8 165 4.1E-19 T 10-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 VF_1791 7023547be077d8a004ac927ea52a39d6 295 Gene3D G3DSA:3.40.1090.20 125 223 2.7E-5 T 10-10-2018 VF_1791 7023547be077d8a004ac927ea52a39d6 295 Gene3D G3DSA:3.40.1090.10 1 106 1.9E-20 T 10-10-2018 VF_0181 05e158d2d9b186fb398849863438b4f3 321 Gene3D G3DSA:2.40.30.10 88 185 8.7E-22 T 10-10-2018 VF_0181 05e158d2d9b186fb398849863438b4f3 321 SUPERFAMILY SSF54292 3 90 2.88E-16 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VF_0181 05e158d2d9b186fb398849863438b4f3 321 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 16 72 2.6E-8 T 10-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VF_0181 05e158d2d9b186fb398849863438b4f3 321 Gene3D G3DSA:3.10.20.30 5 87 1.0E-13 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_0181 05e158d2d9b186fb398849863438b4f3 321 Gene3D G3DSA:3.40.50.80 190 318 7.5E-30 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_0181 05e158d2d9b186fb398849863438b4f3 321 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 285 293 1.7E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0181 05e158d2d9b186fb398849863438b4f3 321 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 197 216 1.7E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0181 05e158d2d9b186fb398849863438b4f3 321 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 138 145 1.7E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_0181 05e158d2d9b186fb398849863438b4f3 321 SUPERFAMILY SSF63380 93 188 1.97E-22 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VF_0181 05e158d2d9b186fb398849863438b4f3 321 Pfam PF00970 Oxidoreductase FAD-binding domain 96 187 1.7E-19 T 10-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 VF_0181 05e158d2d9b186fb398849863438b4f3 321 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 35 43 - T 10-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 VF_0181 05e158d2d9b186fb398849863438b4f3 321 Pfam PF00175 Oxidoreductase NAD-binding domain 198 298 1.3E-21 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VF_0181 05e158d2d9b186fb398849863438b4f3 321 SUPERFAMILY SSF52343 191 318 1.13E-30 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_0181 05e158d2d9b186fb398849863438b4f3 321 PRINTS PR00410 Phenol hydroxylase reductase family signature 222 231 1.6E-22 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_0181 05e158d2d9b186fb398849863438b4f3 321 PRINTS PR00410 Phenol hydroxylase reductase family signature 138 145 1.6E-22 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_0181 05e158d2d9b186fb398849863438b4f3 321 PRINTS PR00410 Phenol hydroxylase reductase family signature 182 191 1.6E-22 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_0181 05e158d2d9b186fb398849863438b4f3 321 PRINTS PR00410 Phenol hydroxylase reductase family signature 197 216 1.6E-22 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_0181 05e158d2d9b186fb398849863438b4f3 321 PRINTS PR00410 Phenol hydroxylase reductase family signature 123 135 1.6E-22 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_0181 05e158d2d9b186fb398849863438b4f3 321 PRINTS PR00410 Phenol hydroxylase reductase family signature 285 293 1.6E-22 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_A0335 45c209cc7b2e7d164c9263496ea9132a 140 Pfam PF02566 OsmC-like protein 38 133 4.3E-20 T 10-10-2018 IPR003718 OsmC/Ohr family VF_A0335 45c209cc7b2e7d164c9263496ea9132a 140 Gene3D G3DSA:3.30.300.20 44 140 3.2E-34 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta VF_A0335 45c209cc7b2e7d164c9263496ea9132a 140 Gene3D G3DSA:2.20.25.10 1 43 1.7E-20 T 10-10-2018 VF_A0335 45c209cc7b2e7d164c9263496ea9132a 140 SUPERFAMILY SSF82784 1 135 2.75E-43 T 10-10-2018 IPR036102 OsmC/Ohr superfamily VF_A0335 45c209cc7b2e7d164c9263496ea9132a 140 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 4 135 3.2E-54 T 10-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 VF_0589 baabf883b740779708a66d6d5216ab0a 141 SUPERFAMILY SSF82649 3 138 1.67E-46 T 10-10-2018 VF_0589 baabf883b740779708a66d6d5216ab0a 141 TIGRFAM TIGR03391 FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE 7 138 5.9E-44 T 10-10-2018 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE VF_0589 baabf883b740779708a66d6d5216ab0a 141 Gene3D G3DSA:3.90.1010.10 1 140 1.8E-46 T 10-10-2018 VF_0589 baabf883b740779708a66d6d5216ab0a 141 Pfam PF02657 Fe-S metabolism associated domain 22 138 1.3E-43 T 10-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like VF_0568 6172251401ea193e885f8d48a5ea4636 135 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 28 1.9E-5 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0568 6172251401ea193e885f8d48a5ea4636 135 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 6.7E-5 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_1487 965047a09bc46350e0e36fe73fb4fbe3 391 Gene3D G3DSA:3.30.470.20 195 389 2.3E-60 T 10-10-2018 VF_1487 965047a09bc46350e0e36fe73fb4fbe3 391 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 12 389 2.0E-188 T 10-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 VF_1487 965047a09bc46350e0e36fe73fb4fbe3 391 SUPERFAMILY SSF56059 111 312 1.01E-58 T 10-10-2018 VF_1487 965047a09bc46350e0e36fe73fb4fbe3 391 Pfam PF01370 NAD dependent epimerase/dehydratase family 17 79 9.6E-5 T 10-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 VF_1487 965047a09bc46350e0e36fe73fb4fbe3 391 Gene3D G3DSA:3.40.50.20 1 120 7.1E-54 T 10-10-2018 VF_1487 965047a09bc46350e0e36fe73fb4fbe3 391 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 6 390 51.946 T 10-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 VF_1487 965047a09bc46350e0e36fe73fb4fbe3 391 SUPERFAMILY SSF52440 2 110 2.73E-35 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VF_1487 965047a09bc46350e0e36fe73fb4fbe3 391 SUPERFAMILY SSF51246 317 389 5.02E-17 T 10-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 VF_1487 965047a09bc46350e0e36fe73fb4fbe3 391 Pfam PF02222 ATP-grasp domain 121 293 2.1E-57 T 10-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type VF_1487 965047a09bc46350e0e36fe73fb4fbe3 391 Gene3D G3DSA:3.30.1490.20 121 194 6.5E-32 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VF_A0678 8360d3e7edbccff7b1e32ccbfeb864de 318 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 36 166 1.3E-63 T 10-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 VF_A0678 8360d3e7edbccff7b1e32ccbfeb864de 318 Gene3D G3DSA:1.10.8.300 200 315 5.9E-38 T 10-10-2018 VF_A0678 8360d3e7edbccff7b1e32ccbfeb864de 318 SUPERFAMILY SSF52540 5 291 5.02E-45 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0678 8360d3e7edbccff7b1e32ccbfeb864de 318 PIRSF PIRSF002849 2 318 1.3E-128 T 10-10-2018 VF_A0678 8360d3e7edbccff7b1e32ccbfeb864de 318 Gene3D G3DSA:3.40.50.300 17 183 8.1E-47 T 10-10-2018 VF_1798 24cf9e344ed9b03f3297d1ff8799c14d 468 Pfam PF00654 Voltage gated chloride channel 88 434 7.9E-90 T 10-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VF_1798 24cf9e344ed9b03f3297d1ff8799c14d 468 Gene3D G3DSA:1.10.3080.10 16 458 7.0E-122 T 10-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 VF_1798 24cf9e344ed9b03f3297d1ff8799c14d 468 PRINTS PR00762 Chloride channel signature 402 421 2.8E-29 T 10-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VF_1798 24cf9e344ed9b03f3297d1ff8799c14d 468 PRINTS PR00762 Chloride channel signature 384 400 2.8E-29 T 10-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VF_1798 24cf9e344ed9b03f3297d1ff8799c14d 468 PRINTS PR00762 Chloride channel signature 100 117 2.8E-29 T 10-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VF_1798 24cf9e344ed9b03f3297d1ff8799c14d 468 PRINTS PR00762 Chloride channel signature 180 199 2.8E-29 T 10-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VF_1798 24cf9e344ed9b03f3297d1ff8799c14d 468 PRINTS PR00762 Chloride channel signature 349 369 2.8E-29 T 10-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VF_1798 24cf9e344ed9b03f3297d1ff8799c14d 468 SUPERFAMILY SSF81340 24 450 2.35E-106 T 10-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 Gene3D G3DSA:3.40.50.1370 8 304 2.5E-119 T 10-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 1.5E-37 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 79 88 1.5E-37 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 1.5E-37 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 286 300 1.5E-37 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 134 151 1.5E-37 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 264 269 1.5E-37 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 7 307 38.854 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 260 269 9.9E-27 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 9.9E-27 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 9.9E-27 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 9.9E-27 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 Gene3D G3DSA:3.40.50.1370 135 292 2.5E-119 T 10-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 1.9E-43 T 10-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 SUPERFAMILY SSF53671 4 307 3.93E-101 T 10-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 8 305 6.7E-116 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VF_0406 7a03f1419c509dbd8aedde90d23eb55d 309 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 2.2E-30 T 10-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 VF_0777 a02b5b1dc9ff99ce0dc7d3c1656aa694 624 Pfam PF00672 HAMP domain 298 342 8.2E-8 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_0777 a02b5b1dc9ff99ce0dc7d3c1656aa694 624 Gene3D G3DSA:1.10.287.950 293 624 2.6E-71 T 10-10-2018 VF_0777 a02b5b1dc9ff99ce0dc7d3c1656aa694 624 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 421 590 4.1E-42 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0777 a02b5b1dc9ff99ce0dc7d3c1656aa694 624 SUPERFAMILY SSF58104 315 624 9.42E-79 T 10-10-2018 VF_0777 a02b5b1dc9ff99ce0dc7d3c1656aa694 624 Pfam PF02743 Cache domain 32 255 1.4E-31 T 10-10-2018 IPR033479 Double Cache domain 1 VF_0777 a02b5b1dc9ff99ce0dc7d3c1656aa694 624 Gene3D G3DSA:3.30.450.20 62 166 7.3E-54 T 10-10-2018 VF_0777 a02b5b1dc9ff99ce0dc7d3c1656aa694 624 SMART SM00304 350 400 37.0 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_0777 a02b5b1dc9ff99ce0dc7d3c1656aa694 624 SMART SM00304 293 347 3.5E-7 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_0777 a02b5b1dc9ff99ce0dc7d3c1656aa694 624 Gene3D G3DSA:3.30.450.20 52 265 7.3E-54 T 10-10-2018 VF_0777 a02b5b1dc9ff99ce0dc7d3c1656aa694 624 SMART SM00283 362 623 7.0E-69 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0777 a02b5b1dc9ff99ce0dc7d3c1656aa694 624 SUPERFAMILY SSF103190 67 173 1.18E-12 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_0009 905e489fb3e3446406b2f2b00572eefb 469 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 378 446 4.9E-32 T 10-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 VF_0009 905e489fb3e3446406b2f2b00572eefb 469 SUPERFAMILY SSF48295 365 468 3.14E-37 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 VF_0009 905e489fb3e3446406b2f2b00572eefb 469 SUPERFAMILY SSF52540 134 345 8.47E-44 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0009 905e489fb3e3446406b2f2b00572eefb 469 Gene3D G3DSA:1.10.8.60 300 370 3.7E-24 T 10-10-2018 VF_0009 905e489fb3e3446406b2f2b00572eefb 469 SMART SM00382 166 368 1.7E-7 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0009 905e489fb3e3446406b2f2b00572eefb 469 Gene3D G3DSA:3.30.300.180 2 113 4.5E-41 T 10-10-2018 IPR038454 DnaA, N-terminal domain superfamily VF_0009 905e489fb3e3446406b2f2b00572eefb 469 Gene3D G3DSA:1.10.1750.10 376 469 1.1E-38 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 VF_0009 905e489fb3e3446406b2f2b00572eefb 469 Gene3D G3DSA:3.40.50.300 123 298 6.8E-49 T 10-10-2018 VF_0009 905e489fb3e3446406b2f2b00572eefb 469 SMART SM00760 377 446 1.5E-44 T 10-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 VF_0009 905e489fb3e3446406b2f2b00572eefb 469 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 468 34.12 T 10-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 VF_0009 905e489fb3e3446406b2f2b00572eefb 469 Pfam PF00308 Bacterial dnaA protein 135 351 4.0E-97 T 10-10-2018 IPR013317 Chromosomal replication initiator protein DnaA VF_0009 905e489fb3e3446406b2f2b00572eefb 469 Pfam PF11638 DnaA N-terminal domain 4 64 1.4E-19 T 10-10-2018 IPR024633 DnaA N-terminal domain VF_0009 905e489fb3e3446406b2f2b00572eefb 469 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 467 1.9E-185 T 10-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 VF_0009 905e489fb3e3446406b2f2b00572eefb 469 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 427 446 1.8E-54 T 10-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VF_0009 905e489fb3e3446406b2f2b00572eefb 469 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 265 292 1.8E-54 T 10-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VF_0009 905e489fb3e3446406b2f2b00572eefb 469 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 167 187 1.8E-54 T 10-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VF_0009 905e489fb3e3446406b2f2b00572eefb 469 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 199 213 1.8E-54 T 10-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VF_0009 905e489fb3e3446406b2f2b00572eefb 469 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 231 245 1.8E-54 T 10-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VF_0009 905e489fb3e3446406b2f2b00572eefb 469 ProSitePatterns PS01008 DnaA protein signature. 427 446 - T 10-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 VF_A0432 b6b929159b16ae2220469a4b32842092 1488 Gene3D G3DSA:3.40.1140.10 1385 1469 5.9E-38 T 10-10-2018 VF_A0432 b6b929159b16ae2220469a4b32842092 1488 Pfam PF16330 MukB hinge domain 646 811 3.1E-73 T 10-10-2018 IPR032520 MukB, hinge domain VF_A0432 b6b929159b16ae2220469a4b32842092 1488 Gene3D G3DSA:1.20.58.850 583 853 1.2E-125 T 10-10-2018 VF_A0432 b6b929159b16ae2220469a4b32842092 1488 Gene3D G3DSA:1.20.58.850 621 831 1.2E-125 T 10-10-2018 VF_A0432 b6b929159b16ae2220469a4b32842092 1488 Gene3D G3DSA:3.40.1140.10 1 227 1.2E-97 T 10-10-2018 VF_A0432 b6b929159b16ae2220469a4b32842092 1488 Pfam PF04310 MukB N-terminal 2 227 1.5E-119 T 10-10-2018 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 VF_A0432 b6b929159b16ae2220469a4b32842092 1488 SUPERFAMILY SSF52540 23 224 2.52E-24 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0432 b6b929159b16ae2220469a4b32842092 1488 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1337 1425 1.9E-14 T 10-10-2018 VF_A0432 b6b929159b16ae2220469a4b32842092 1488 PIRSF PIRSF005246 1 1486 0.0 T 10-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 VF_A0432 b6b929159b16ae2220469a4b32842092 1488 Gene3D G3DSA:1.20.1060.30 668 779 1.2E-125 T 10-10-2018 VF_A0334 8de3e9d00266529ad977ade3aa3b110d 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 118 134 2.0E-5 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A0334 8de3e9d00266529ad977ade3aa3b110d 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 99 114 2.0E-5 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A0334 8de3e9d00266529ad977ade3aa3b110d 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 82 98 2.0E-5 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A0334 8de3e9d00266529ad977ade3aa3b110d 172 SMART SM00347 58 156 1.8E-22 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A0334 8de3e9d00266529ad977ade3aa3b110d 172 Pfam PF01047 MarR family 65 122 2.3E-16 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_A0334 8de3e9d00266529ad977ade3aa3b110d 172 SUPERFAMILY SSF46785 35 171 3.44E-34 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0334 8de3e9d00266529ad977ade3aa3b110d 172 Gene3D G3DSA:1.10.10.10 29 172 2.6E-36 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1049 1c2c589d453958c77f6b032fd33729b0 373 Gene3D G3DSA:3.20.20.70 4 370 3.0E-136 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A1049 1c2c589d453958c77f6b032fd33729b0 373 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 341 9.6E-93 T 10-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 VF_A1049 1c2c589d453958c77f6b032fd33729b0 373 SUPERFAMILY SSF51395 1 366 1.17E-121 T 10-10-2018 VF_A0122 c440b24270fe619db0260d43f5dca287 358 Gene3D G3DSA:3.20.20.70 1 357 2.8E-105 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A0122 c440b24270fe619db0260d43f5dca287 358 SUPERFAMILY SSF51395 1 337 7.05E-95 T 10-10-2018 VF_A0122 c440b24270fe619db0260d43f5dca287 358 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 1 326 3.4E-66 T 10-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 VF_0947 432bc8ede4444c7e1645eb26866fcdd0 324 SUPERFAMILY SSF53335 88 312 9.41E-32 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_0947 432bc8ede4444c7e1645eb26866fcdd0 324 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 13 322 53.219 T 10-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 VF_0947 432bc8ede4444c7e1645eb26866fcdd0 324 Pfam PF08003 Protein of unknown function (DUF1698) 7 322 1.7E-168 T 10-10-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like VF_0947 432bc8ede4444c7e1645eb26866fcdd0 324 Gene3D G3DSA:3.40.50.150 86 300 1.3E-21 T 10-10-2018 VF_0947 432bc8ede4444c7e1645eb26866fcdd0 324 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 13 321 4.0E-145 T 10-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 VF_1341 48de1135ff2f1950329fa6c0b4f54c5c 253 Pfam PF04794 YdjC-like protein 2 241 1.2E-52 T 10-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like VF_1341 48de1135ff2f1950329fa6c0b4f54c5c 253 SUPERFAMILY SSF88713 1 252 1.47E-70 T 10-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 VF_1341 48de1135ff2f1950329fa6c0b4f54c5c 253 Gene3D G3DSA:3.20.20.370 1 253 1.0E-70 T 10-10-2018 VF_2058 3833fc54daef0853723898568efa00d6 444 Pfam PF13520 Amino acid permease 8 420 3.8E-32 T 10-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VF_2058 3833fc54daef0853723898568efa00d6 444 PIRSF PIRSF006060 1 436 5.6E-45 T 10-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VF_2058 3833fc54daef0853723898568efa00d6 444 Gene3D G3DSA:1.20.1740.10 1 443 9.8E-58 T 10-10-2018 VF_A0677 6fa123a042b850cc82dea72e2ccb7568 637 SMART SM00304 395 462 83.0 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0677 6fa123a042b850cc82dea72e2ccb7568 637 SMART SM00304 306 360 7.7E-10 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0677 6fa123a042b850cc82dea72e2ccb7568 637 Gene3D G3DSA:3.30.450.20 157 282 6.8E-17 T 10-10-2018 VF_A0677 6fa123a042b850cc82dea72e2ccb7568 637 SUPERFAMILY SSF58104 328 637 1.31E-79 T 10-10-2018 VF_A0677 6fa123a042b850cc82dea72e2ccb7568 637 Gene3D G3DSA:1.10.287.950 306 637 8.9E-76 T 10-10-2018 VF_A0677 6fa123a042b850cc82dea72e2ccb7568 637 Pfam PF00672 HAMP domain 307 356 3.3E-7 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0677 6fa123a042b850cc82dea72e2ccb7568 637 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 473 500 1.0E-22 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0677 6fa123a042b850cc82dea72e2ccb7568 637 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 502 531 1.0E-22 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0677 6fa123a042b850cc82dea72e2ccb7568 637 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 283 303 1.0E-22 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0677 6fa123a042b850cc82dea72e2ccb7568 637 SMART SM00283 375 636 5.3E-80 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0677 6fa123a042b850cc82dea72e2ccb7568 637 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 421 603 2.1E-43 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1953 425e27829276d486bed4b49313532267 171 Gene3D G3DSA:3.30.910.20 27 171 1.4E-40 T 10-10-2018 IPR024930 Skp domain superfamily VF_1953 425e27829276d486bed4b49313532267 171 SMART SM00935 17 171 1.3E-48 T 10-10-2018 IPR005632 Chaperone protein Skp GO:0051082 VF_1953 425e27829276d486bed4b49313532267 171 PIRSF PIRSF002094 3 171 8.9E-45 T 10-10-2018 IPR005632 Chaperone protein Skp GO:0051082 VF_1953 425e27829276d486bed4b49313532267 171 Pfam PF03938 Outer membrane protein (OmpH-like) 16 169 7.3E-30 T 10-10-2018 IPR005632 Chaperone protein Skp GO:0051082 VF_1953 425e27829276d486bed4b49313532267 171 SUPERFAMILY SSF111384 28 170 9.29E-34 T 10-10-2018 VF_A1059 1ccd49f11876016a53941559f2571c1f 494 Pfam PF06863 Protein of unknown function (DUF1254) 98 229 3.8E-32 T 10-10-2018 IPR010679 Domain of unknown function DUF1254 VF_A1059 1ccd49f11876016a53941559f2571c1f 494 SUPERFAMILY SSF160935 48 493 9.42E-115 T 10-10-2018 VF_A1059 1ccd49f11876016a53941559f2571c1f 494 Gene3D G3DSA:1.10.3360.10 62 84 3.6E-14 T 10-10-2018 IPR023289 VPA0735-like domain superfamily VF_A1059 1ccd49f11876016a53941559f2571c1f 494 Pfam PF06742 Protein of unknown function (DUF1214) 370 478 5.9E-36 T 10-10-2018 IPR010621 Domain of unknown function DUF1214 VF_A1059 1ccd49f11876016a53941559f2571c1f 494 Gene3D G3DSA:2.60.120.600 332 494 5.5E-46 T 10-10-2018 IPR037049 Domain of unknown function DUF1214, C-terminal domain superfamily VF_A1059 1ccd49f11876016a53941559f2571c1f 494 Gene3D G3DSA:2.60.40.1610 85 234 3.6E-14 T 10-10-2018 IPR037050 Domain of unknown function DUF1254 superfamily VF_A0691 88c1a7b7392efcc4bef2639d8fcbb088 218 Pfam PF00881 Nitroreductase family 10 193 5.3E-19 T 10-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 VF_A0691 88c1a7b7392efcc4bef2639d8fcbb088 218 Gene3D G3DSA:3.40.109.10 1 218 2.7E-59 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VF_A0691 88c1a7b7392efcc4bef2639d8fcbb088 218 SUPERFAMILY SSF55469 3 217 2.22E-53 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VF_A0771 1aff437f6fc2b6e0f1ecafd6c13e692c 290 Pfam PF03466 LysR substrate binding domain 88 289 5.4E-24 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0771 1aff437f6fc2b6e0f1ecafd6c13e692c 290 SUPERFAMILY SSF53850 89 286 7.6E-27 T 10-10-2018 VF_A0771 1aff437f6fc2b6e0f1ecafd6c13e692c 290 Gene3D G3DSA:1.10.10.10 4 90 2.2E-22 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0771 1aff437f6fc2b6e0f1ecafd6c13e692c 290 Gene3D G3DSA:3.40.190.10 164 261 1.7E-38 T 10-10-2018 VF_A0771 1aff437f6fc2b6e0f1ecafd6c13e692c 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 2.6E-16 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0771 1aff437f6fc2b6e0f1ecafd6c13e692c 290 SUPERFAMILY SSF46785 8 88 1.41E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0771 1aff437f6fc2b6e0f1ecafd6c13e692c 290 Gene3D G3DSA:3.40.190.10 92 285 1.7E-38 T 10-10-2018 VF_A1046 f01546cca90dbca9eae2bf69651820ba 289 Pfam PF03466 LysR substrate binding domain 111 271 4.3E-9 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A1046 f01546cca90dbca9eae2bf69651820ba 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 2.3E-19 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1046 f01546cca90dbca9eae2bf69651820ba 289 SUPERFAMILY SSF46785 2 84 6.13E-23 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A1046 f01546cca90dbca9eae2bf69651820ba 289 Gene3D G3DSA:3.40.190.10 164 253 7.2E-6 T 10-10-2018 VF_A1046 f01546cca90dbca9eae2bf69651820ba 289 Gene3D G3DSA:1.10.10.10 3 88 1.5E-24 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1046 f01546cca90dbca9eae2bf69651820ba 289 SUPERFAMILY SSF53850 108 275 1.55E-14 T 10-10-2018 VF_A1046 f01546cca90dbca9eae2bf69651820ba 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.4E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1046 f01546cca90dbca9eae2bf69651820ba 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.4E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1046 f01546cca90dbca9eae2bf69651820ba 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.4E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1046 f01546cca90dbca9eae2bf69651820ba 289 Gene3D G3DSA:3.40.190.10 120 279 7.2E-6 T 10-10-2018 VF_0721 95ea6cde2e54b9afd2345b861d39eaa0 186 Gene3D G3DSA:2.40.100.10 22 185 9.2E-55 T 10-10-2018 IPR029000 Cyclophilin-like domain superfamily VF_0721 95ea6cde2e54b9afd2345b861d39eaa0 186 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 60 77 - T 10-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 VF_0721 95ea6cde2e54b9afd2345b861d39eaa0 186 PIRSF PIRSF001467 12 185 5.3E-22 T 10-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 VF_0721 95ea6cde2e54b9afd2345b861d39eaa0 186 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 26 182 1.6E-41 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VF_0721 95ea6cde2e54b9afd2345b861d39eaa0 186 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 139 154 5.5E-10 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VF_0721 95ea6cde2e54b9afd2345b861d39eaa0 186 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 65 77 5.5E-10 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VF_0721 95ea6cde2e54b9afd2345b861d39eaa0 186 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 39 54 5.5E-10 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VF_0721 95ea6cde2e54b9afd2345b861d39eaa0 186 SUPERFAMILY SSF50891 25 185 2.48E-49 T 10-10-2018 IPR029000 Cyclophilin-like domain superfamily VF_2529 b5198b4547887dc0f3f6911c02bdafc3 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 8.0E-18 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2529 b5198b4547887dc0f3f6911c02bdafc3 294 Gene3D G3DSA:3.40.190.10 165 265 3.9E-28 T 10-10-2018 VF_2529 b5198b4547887dc0f3f6911c02bdafc3 294 Gene3D G3DSA:1.10.10.10 1 91 1.1E-19 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2529 b5198b4547887dc0f3f6911c02bdafc3 294 Pfam PF03466 LysR substrate binding domain 88 290 9.6E-34 T 10-10-2018 IPR005119 LysR, substrate-binding VF_2529 b5198b4547887dc0f3f6911c02bdafc3 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.0E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2529 b5198b4547887dc0f3f6911c02bdafc3 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.0E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2529 b5198b4547887dc0f3f6911c02bdafc3 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.0E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2529 b5198b4547887dc0f3f6911c02bdafc3 294 SUPERFAMILY SSF53850 89 292 4.83E-30 T 10-10-2018 VF_2529 b5198b4547887dc0f3f6911c02bdafc3 294 SUPERFAMILY SSF46785 1 77 1.09E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_2529 b5198b4547887dc0f3f6911c02bdafc3 294 Gene3D G3DSA:3.40.190.10 92 286 3.9E-28 T 10-10-2018 VF_2187 e7ea4cd83263fd52f130504468e42ce4 412 Pfam PF00482 Type II secretion system (T2SS), protein F 77 200 6.6E-30 T 10-10-2018 IPR018076 Type II secretion system F domain VF_2187 e7ea4cd83263fd52f130504468e42ce4 412 Pfam PF00482 Type II secretion system (T2SS), protein F 281 403 3.2E-27 T 10-10-2018 IPR018076 Type II secretion system F domain VF_2187 e7ea4cd83263fd52f130504468e42ce4 412 Gene3D G3DSA:1.20.81.30 63 181 3.3E-29 T 10-10-2018 VF_2187 e7ea4cd83263fd52f130504468e42ce4 412 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 172 200 - T 10-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 VF_2187 e7ea4cd83263fd52f130504468e42ce4 412 PRINTS PR00812 Bacterial general secretion pathway protein F signature 172 200 1.8E-18 T 10-10-2018 IPR003004 GspF/PilC family VF_2187 e7ea4cd83263fd52f130504468e42ce4 412 PRINTS PR00812 Bacterial general secretion pathway protein F signature 392 411 1.8E-18 T 10-10-2018 IPR003004 GspF/PilC family VF_2187 e7ea4cd83263fd52f130504468e42ce4 412 PRINTS PR00812 Bacterial general secretion pathway protein F signature 73 85 1.8E-18 T 10-10-2018 IPR003004 GspF/PilC family VF_2187 e7ea4cd83263fd52f130504468e42ce4 412 PRINTS PR00812 Bacterial general secretion pathway protein F signature 376 390 1.8E-18 T 10-10-2018 IPR003004 GspF/PilC family VF_2187 e7ea4cd83263fd52f130504468e42ce4 412 Gene3D G3DSA:1.20.81.30 264 375 1.7E-28 T 10-10-2018 VF_1519 1ffcff624a9f01968d1da4e4c579e842 157 Pfam PF11163 Protein of unknown function (DUF2947) 3 154 9.0E-67 T 10-10-2018 IPR021334 Protein of unknown function DUF2947 VF_0829 9f72916279e6acd6d1ac24a8b338d63d 256 Pfam PF00005 ABC transporter 21 148 3.8E-30 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0829 9f72916279e6acd6d1ac24a8b338d63d 256 SUPERFAMILY SSF52540 3 227 8.18E-54 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0829 9f72916279e6acd6d1ac24a8b338d63d 256 SMART SM00382 29 199 4.3E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0829 9f72916279e6acd6d1ac24a8b338d63d 256 ProSitePatterns PS00211 ABC transporters family signature. 121 135 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0829 9f72916279e6acd6d1ac24a8b338d63d 256 Gene3D G3DSA:3.40.50.300 1 242 3.4E-56 T 10-10-2018 VF_A1102 045d17c326624d64f2d1bdc35eb0026c 267 Gene3D G3DSA:1.10.443.10 8 254 1.8E-21 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VF_A1102 045d17c326624d64f2d1bdc35eb0026c 267 Pfam PF00589 Phage integrase family 31 250 2.0E-16 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VF_A1102 045d17c326624d64f2d1bdc35eb0026c 267 SUPERFAMILY SSF56349 21 258 2.38E-22 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VF_1179 83e04521db0a9e77f9c50289b833ef85 456 PRINTS PR00095 Anthranilate synthase component I signature 296 309 6.0E-17 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VF_1179 83e04521db0a9e77f9c50289b833ef85 456 PRINTS PR00095 Anthranilate synthase component I signature 405 419 6.0E-17 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VF_1179 83e04521db0a9e77f9c50289b833ef85 456 PRINTS PR00095 Anthranilate synthase component I signature 390 404 6.0E-17 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VF_1179 83e04521db0a9e77f9c50289b833ef85 456 PRINTS PR00095 Anthranilate synthase component I signature 310 323 6.0E-17 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VF_1179 83e04521db0a9e77f9c50289b833ef85 456 Pfam PF04715 Anthranilate synthase component I, N terminal region 21 158 3.1E-25 T 10-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VF_1179 83e04521db0a9e77f9c50289b833ef85 456 Gene3D G3DSA:3.60.120.10 6 456 4.9E-166 T 10-10-2018 IPR005801 ADC synthase GO:0009058 VF_1179 83e04521db0a9e77f9c50289b833ef85 456 Pfam PF00425 chorismate binding enzyme 195 448 2.3E-96 T 10-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal VF_1179 83e04521db0a9e77f9c50289b833ef85 456 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 111 450 6.3E-122 T 10-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 VF_1179 83e04521db0a9e77f9c50289b833ef85 456 SUPERFAMILY SSF56322 11 456 7.98E-142 T 10-10-2018 IPR005801 ADC synthase GO:0009058 VF_0765 d0c62c0cb62af8c7c8710dd83bf9ae8a 288 Pfam PF08544 GHMP kinases C terminal 199 255 2.0E-5 T 10-10-2018 IPR013750 GHMP kinase, C-terminal domain VF_0765 d0c62c0cb62af8c7c8710dd83bf9ae8a 288 Gene3D G3DSA:3.30.230.10 1 160 7.6E-55 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_0765 d0c62c0cb62af8c7c8710dd83bf9ae8a 288 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 5 279 8.8E-97 T 10-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 VF_0765 d0c62c0cb62af8c7c8710dd83bf9ae8a 288 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 6 272 31.943 T 10-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 VF_0765 d0c62c0cb62af8c7c8710dd83bf9ae8a 288 SUPERFAMILY SSF55060 162 278 1.25E-35 T 10-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VF_0765 d0c62c0cb62af8c7c8710dd83bf9ae8a 288 Pfam PF00288 GHMP kinases N terminal domain 88 145 2.5E-8 T 10-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 VF_0765 d0c62c0cb62af8c7c8710dd83bf9ae8a 288 Gene3D G3DSA:3.30.70.890 162 280 1.1E-27 T 10-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VF_0765 d0c62c0cb62af8c7c8710dd83bf9ae8a 288 PIRSF PIRSF010376 4 280 5.7E-85 T 10-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 VF_0765 d0c62c0cb62af8c7c8710dd83bf9ae8a 288 SUPERFAMILY SSF54211 5 159 5.39E-44 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_A1100 b809ad09ae21a2ca26247f937183203b 324 SUPERFAMILY SSF103088 211 318 3.66E-19 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A1100 b809ad09ae21a2ca26247f937183203b 324 SUPERFAMILY SSF56925 17 185 1.7E-27 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VF_A1100 b809ad09ae21a2ca26247f937183203b 324 Pfam PF00691 OmpA family 216 302 2.0E-10 T 10-10-2018 IPR006665 OmpA-like domain VF_A1100 b809ad09ae21a2ca26247f937183203b 324 Pfam PF01389 OmpA-like transmembrane domain 17 186 1.3E-21 T 10-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 VF_A1100 b809ad09ae21a2ca26247f937183203b 324 Gene3D G3DSA:3.30.1330.60 207 319 4.8E-17 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A1100 b809ad09ae21a2ca26247f937183203b 324 Gene3D G3DSA:2.40.160.20 3 204 3.4E-44 T 10-10-2018 VF_0941 3203d45e053aecdac8dbb20c803f988f 159 Pfam PF01967 MoaC family 15 150 7.6E-56 T 10-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_0941 3203d45e053aecdac8dbb20c803f988f 159 Gene3D G3DSA:3.30.70.640 1 159 7.0E-70 T 10-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_0941 3203d45e053aecdac8dbb20c803f988f 159 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 2.0E-71 T 10-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_0941 3203d45e053aecdac8dbb20c803f988f 159 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 158 36.038 T 10-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_0941 3203d45e053aecdac8dbb20c803f988f 159 SUPERFAMILY SSF55040 11 155 1.7E-61 T 10-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VF_A0035 70992329c45f711f066ca9bf1761abab 673 SUPERFAMILY SSF56281 31 538 9.14E-104 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VF_A0035 70992329c45f711f066ca9bf1761abab 673 SUPERFAMILY SSF55718 546 669 3.83E-26 T 10-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VF_A0035 70992329c45f711f066ca9bf1761abab 673 Pfam PF00753 Metallo-beta-lactamase superfamily 125 345 9.4E-16 T 10-10-2018 IPR001279 Metallo-beta-lactamase VF_A0035 70992329c45f711f066ca9bf1761abab 673 SMART SM00849 129 356 2.7E-14 T 10-10-2018 IPR001279 Metallo-beta-lactamase VF_A0035 70992329c45f711f066ca9bf1761abab 673 Pfam PF14864 Alkyl sulfatase C-terminal 546 668 2.0E-25 T 10-10-2018 IPR029229 Alkyl sulfatase, C-terminal VF_A0035 70992329c45f711f066ca9bf1761abab 673 Gene3D G3DSA:1.25.40.880 398 537 2.0E-33 T 10-10-2018 IPR038536 Alkyl/aryl-sulfatase, dimerisation domain superfamily VF_A0035 70992329c45f711f066ca9bf1761abab 673 Pfam PF14863 Alkyl sulfatase dimerisation 398 537 1.2E-34 T 10-10-2018 IPR029228 Alkyl sulfatase dimerisation domain GO:0046983 VF_A0035 70992329c45f711f066ca9bf1761abab 673 Gene3D G3DSA:3.30.1050.10 539 671 2.3E-28 T 10-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VF_A0035 70992329c45f711f066ca9bf1761abab 673 ProSitePatterns PS00743 Beta-lactamases class B signature 1. 177 196 - T 10-10-2018 IPR001018 Beta-lactamase, class-B, conserved site GO:0008270|GO:0008800|GO:0017001 VF_A0035 70992329c45f711f066ca9bf1761abab 673 Gene3D G3DSA:3.60.15.30 31 396 5.1E-118 T 10-10-2018 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 Gene3D G3DSA:3.30.1330.20 221 330 4.3E-34 T 10-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 10-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 Gene3D G3DSA:3.40.50.1440 5 220 2.4E-78 T 10-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 Pfam PF12327 FtsZ family, C-terminal domain 222 316 3.5E-36 T 10-10-2018 IPR024757 Cell division protein FtsZ, C-terminal VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 SUPERFAMILY SSF52490 13 208 3.53E-68 T 10-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 7 331 1.7E-135 T 10-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 173 6.5E-38 T 10-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 SUPERFAMILY SSF55307 204 320 4.12E-42 T 10-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 365 37.879 T 10-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 PRINTS PR00423 Cell division protein FtsZ signature 189 211 1.2E-51 T 10-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 PRINTS PR00423 Cell division protein FtsZ signature 212 233 1.2E-51 T 10-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 PRINTS PR00423 Cell division protein FtsZ signature 126 147 1.2E-51 T 10-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 PRINTS PR00423 Cell division protein FtsZ signature 98 118 1.2E-51 T 10-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 SMART SM00865 207 325 5.4E-56 T 10-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 SMART SM00864 13 205 1.4E-111 T 10-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VF_2196 c4ae7f762b312014c395f452e32cb7bb 416 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 10-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 VF_0226 a2c2a5e3f09b5e32fa9601c148af89ce 264 Gene3D G3DSA:3.10.50.40 150 262 1.7E-43 T 10-10-2018 VF_0226 a2c2a5e3f09b5e32fa9601c148af89ce 264 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 167 254 7.5E-29 T 10-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VF_0226 a2c2a5e3f09b5e32fa9601c148af89ce 264 Gene3D G3DSA:1.10.287.460 36 149 5.0E-28 T 10-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 VF_0226 a2c2a5e3f09b5e32fa9601c148af89ce 264 SUPERFAMILY SSF54534 51 257 7.27E-63 T 10-10-2018 VF_0226 a2c2a5e3f09b5e32fa9601c148af89ce 264 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 40 160 6.3E-33 T 10-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 VF_1747 ffd652713559bd23225b8b909281dc12 315 Gene3D G3DSA:3.10.290.10 9 72 1.2E-16 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VF_1747 ffd652713559bd23225b8b909281dc12 315 Pfam PF01479 S4 domain 20 66 2.1E-11 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_1747 ffd652713559bd23225b8b909281dc12 315 SMART SM00363 20 82 1.7E-10 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_1747 ffd652713559bd23225b8b909281dc12 315 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 141 155 - T 10-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1747 ffd652713559bd23225b8b909281dc12 315 Pfam PF00849 RNA pseudouridylate synthase 102 247 9.3E-33 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1747 ffd652713559bd23225b8b909281dc12 315 SUPERFAMILY SSF55174 19 71 9.16E-10 T 10-10-2018 VF_1747 ffd652713559bd23225b8b909281dc12 315 Gene3D G3DSA:3.30.2350.10 94 315 2.7E-78 T 10-10-2018 VF_1747 ffd652713559bd23225b8b909281dc12 315 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 18 311 6.9E-90 T 10-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1747 ffd652713559bd23225b8b909281dc12 315 SUPERFAMILY SSF55120 96 311 4.32E-64 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1695 707c2c448560836aad98232699ada7cc 294 Gene3D G3DSA:3.90.226.10 25 285 3.6E-82 T 10-10-2018 VF_1695 707c2c448560836aad98232699ada7cc 294 SUPERFAMILY SSF52096 25 282 4.97E-84 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VF_1695 707c2c448560836aad98232699ada7cc 294 Pfam PF01039 Carboxyl transferase domain 102 240 1.9E-12 T 10-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 VF_1695 707c2c448560836aad98232699ada7cc 294 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 284 5.0E-140 T 10-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_1695 707c2c448560836aad98232699ada7cc 294 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 5.8E-39 T 10-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_1695 707c2c448560836aad98232699ada7cc 294 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 5.8E-39 T 10-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_1695 707c2c448560836aad98232699ada7cc 294 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 5.8E-39 T 10-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_1695 707c2c448560836aad98232699ada7cc 294 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 5.8E-39 T 10-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_1695 707c2c448560836aad98232699ada7cc 294 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 5.8E-39 T 10-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_1695 707c2c448560836aad98232699ada7cc 294 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 36.572 T 10-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 319 1.5E-70 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 Gene3D G3DSA:3.50.50.60 144 261 4.6E-125 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.9E-64 T 10-10-2018 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 1.9E-64 T 10-10-2018 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 1.9E-64 T 10-10-2018 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 1.9E-64 T 10-10-2018 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 425 445 1.9E-64 T 10-10-2018 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 1.9E-64 T 10-10-2018 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 403 418 1.9E-64 T 10-10-2018 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 1.9E-64 T 10-10-2018 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 1.9E-64 T 10-10-2018 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 1.5E-28 T 10-10-2018 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 1.5E-28 T 10-10-2018 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.5E-28 T 10-10-2018 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 1.5E-28 T 10-10-2018 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 1.5E-28 T 10-10-2018 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 340 450 6.8E-35 T 10-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 Gene3D G3DSA:3.50.50.60 5 315 4.6E-125 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 4 451 1.1E-214 T 10-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 SUPERFAMILY SSF51905 1 366 2.59E-60 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 SUPERFAMILY SSF55424 337 451 1.03E-36 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 10-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 Gene3D G3DSA:3.30.390.30 339 451 3.3E-48 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VF_2489 9434609b8a04cebdf6d4a3f05e35910f 451 PIRSF PIRSF000350 1 445 9.9E-86 T 10-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 VF_1308 873ea7a41273e06274f2ba1639c2a38b 250 Gene3D G3DSA:2.60.120.10 43 164 2.5E-49 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_1308 873ea7a41273e06274f2ba1639c2a38b 250 Gene3D G3DSA:1.10.10.10 165 250 8.7E-28 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1308 873ea7a41273e06274f2ba1639c2a38b 250 SMART SM00100 30 151 2.0E-18 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain VF_1308 873ea7a41273e06274f2ba1639c2a38b 250 SUPERFAMILY SSF51206 23 162 4.45E-31 T 10-10-2018 IPR018490 Cyclic nucleotide-binding-like VF_1308 873ea7a41273e06274f2ba1639c2a38b 250 Pfam PF00027 Cyclic nucleotide-binding domain 51 132 8.3E-16 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain VF_1308 873ea7a41273e06274f2ba1639c2a38b 250 SMART SM00419 187 235 9.7E-14 T 10-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VF_1308 873ea7a41273e06274f2ba1639c2a38b 250 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 209 224 4.8E-11 T 10-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VF_1308 873ea7a41273e06274f2ba1639c2a38b 250 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 193 209 4.8E-11 T 10-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VF_1308 873ea7a41273e06274f2ba1639c2a38b 250 ProSitePatterns PS00042 Crp-type HTH domain signature. 195 218 - T 10-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 VF_1308 873ea7a41273e06274f2ba1639c2a38b 250 SUPERFAMILY SSF46785 165 244 4.38E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1308 873ea7a41273e06274f2ba1639c2a38b 250 Pfam PF13545 Crp-like helix-turn-helix domain 168 242 8.8E-17 T 10-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VF_1289 86bd475cb5254d09e87fa08982c448ad 636 SMART SM00382 344 514 1.4E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1289 86bd475cb5254d09e87fa08982c448ad 636 SMART SM00382 28 230 1.1E-14 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1289 86bd475cb5254d09e87fa08982c448ad 636 Pfam PF16326 ABC transporter C-terminal domain 565 633 8.8E-19 T 10-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 VF_1289 86bd475cb5254d09e87fa08982c448ad 636 Pfam PF00005 ABC transporter 335 469 5.5E-25 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1289 86bd475cb5254d09e87fa08982c448ad 636 Gene3D G3DSA:3.40.50.300 281 551 2.2E-67 T 10-10-2018 VF_1289 86bd475cb5254d09e87fa08982c448ad 636 Gene3D G3DSA:1.10.287.380 555 636 1.4E-27 T 10-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 VF_1289 86bd475cb5254d09e87fa08982c448ad 636 SUPERFAMILY SSF52540 5 234 5.78E-48 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1289 86bd475cb5254d09e87fa08982c448ad 636 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1289 86bd475cb5254d09e87fa08982c448ad 636 Pfam PF12848 ABC transporter 224 296 8.1E-9 T 10-10-2018 IPR032781 ABC-transporter extension domain VF_1289 86bd475cb5254d09e87fa08982c448ad 636 Gene3D G3DSA:3.40.50.300 7 279 7.5E-66 T 10-10-2018 VF_1289 86bd475cb5254d09e87fa08982c448ad 636 SUPERFAMILY SSF52540 311 518 3.77E-45 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1289 86bd475cb5254d09e87fa08982c448ad 636 Pfam PF00005 ABC transporter 19 185 4.3E-25 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1289 86bd475cb5254d09e87fa08982c448ad 636 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0701 5668edd4d97ebcaf6189176b45261b63 218 SUPERFAMILY SSF47413 37 101 3.22E-16 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_A0701 5668edd4d97ebcaf6189176b45261b63 218 Pfam PF07883 Cupin domain 156 215 3.3E-9 T 10-10-2018 IPR013096 Cupin 2, conserved barrel VF_A0701 5668edd4d97ebcaf6189176b45261b63 218 SMART SM00530 42 97 3.7E-14 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_A0701 5668edd4d97ebcaf6189176b45261b63 218 SUPERFAMILY SSF51182 109 215 8.19E-23 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_A0701 5668edd4d97ebcaf6189176b45261b63 218 Pfam PF01381 Helix-turn-helix 43 94 7.6E-14 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_A0701 5668edd4d97ebcaf6189176b45261b63 218 Gene3D G3DSA:2.60.120.10 107 216 8.7E-24 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_A0701 5668edd4d97ebcaf6189176b45261b63 218 Gene3D G3DSA:1.10.260.40 35 102 1.3E-16 T 10-10-2018 VF_A0663 15286bf61cdfe6b90a0cbf1d26fa7843 327 Pfam PF00589 Phage integrase family 121 312 4.6E-43 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VF_A0663 15286bf61cdfe6b90a0cbf1d26fa7843 327 TIGRFAM TIGR02249 integrase_gron: integron integrase 16 325 2.2E-113 T 10-10-2018 IPR011946 Integrase, integron-type GO:0003677|GO:0006310|GO:0015074 VF_A0663 15286bf61cdfe6b90a0cbf1d26fa7843 327 Gene3D G3DSA:1.10.150.130 11 102 2.1E-22 T 10-10-2018 IPR010998 Integrase/recombinase, N-terminal VF_A0663 15286bf61cdfe6b90a0cbf1d26fa7843 327 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 16 96 1.1E-16 T 10-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 VF_A0663 15286bf61cdfe6b90a0cbf1d26fa7843 327 Gene3D G3DSA:1.10.443.10 103 314 9.8E-61 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VF_A0663 15286bf61cdfe6b90a0cbf1d26fa7843 327 SUPERFAMILY SSF56349 15 314 3.24E-44 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VF_0571 fb80c34902eda69ee118e3fd170319d2 171 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 24 4.1E-7 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0571 fb80c34902eda69ee118e3fd170319d2 171 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 3 23 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0571 fb80c34902eda69ee118e3fd170319d2 171 PIRSF PIRSF024622 1 171 3.7E-81 T 10-10-2018 IPR016824 Tfp pilus assembly protein FimT VF_0571 fb80c34902eda69ee118e3fd170319d2 171 Gene3D G3DSA:3.30.700.10 5 164 2.3E-9 T 10-10-2018 VF_0571 fb80c34902eda69ee118e3fd170319d2 171 SUPERFAMILY SSF54523 5 151 1.18E-14 T 10-10-2018 VF_0571 fb80c34902eda69ee118e3fd170319d2 171 Pfam PF12019 Type II transport protein GspH 41 144 1.5E-5 T 10-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 VF_0571 fb80c34902eda69ee118e3fd170319d2 171 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 3 25 2.8E-8 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_1942 d1b7db0ae72e750f191c011d78b9831c 112 Gene3D G3DSA:3.30.70.120 1 112 1.3E-48 T 10-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VF_1942 d1b7db0ae72e750f191c011d78b9831c 112 SMART SM00938 4 105 2.0E-69 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VF_1942 d1b7db0ae72e750f191c011d78b9831c 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 10-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 VF_1942 d1b7db0ae72e750f191c011d78b9831c 112 SUPERFAMILY SSF54913 1 112 3.81E-47 T 10-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta VF_1942 d1b7db0ae72e750f191c011d78b9831c 112 PRINTS PR00340 P-II protein signature 52 75 7.0E-45 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VF_1942 d1b7db0ae72e750f191c011d78b9831c 112 PRINTS PR00340 P-II protein signature 23 41 7.0E-45 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VF_1942 d1b7db0ae72e750f191c011d78b9831c 112 PRINTS PR00340 P-II protein signature 2 17 7.0E-45 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VF_1942 d1b7db0ae72e750f191c011d78b9831c 112 PRINTS PR00340 P-II protein signature 83 103 7.0E-45 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VF_1942 d1b7db0ae72e750f191c011d78b9831c 112 PIRSF PIRSF039144 1 112 6.2E-58 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VF_1942 d1b7db0ae72e750f191c011d78b9831c 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 10-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 VF_1942 d1b7db0ae72e750f191c011d78b9831c 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 4.1E-45 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VF_1111 d3f944fab4bd7559ffcb54662a8e43bd 245 SUPERFAMILY SSF53850 50 243 5.79E-25 T 10-10-2018 VF_1111 d3f944fab4bd7559ffcb54662a8e43bd 245 Gene3D G3DSA:3.40.190.290 52 243 2.2E-29 T 10-10-2018 VF_1111 d3f944fab4bd7559ffcb54662a8e43bd 245 Gene3D G3DSA:1.10.10.10 1 51 1.2E-5 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1111 d3f944fab4bd7559ffcb54662a8e43bd 245 Pfam PF03466 LysR substrate binding domain 50 240 2.5E-20 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1759 49dd7e26d2909587743db5408d84d536 557 Gene3D G3DSA:2.40.50.140 269 357 2.2E-31 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 Gene3D G3DSA:2.40.50.140 358 444 2.4E-24 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 Gene3D G3DSA:2.40.50.140 98 181 8.3E-7 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 PRINTS PR00681 Ribosomal protein S1 signature 155 175 6.4E-97 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 PRINTS PR00681 Ribosomal protein S1 signature 39 53 6.4E-97 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 PRINTS PR00681 Ribosomal protein S1 signature 21 39 6.4E-97 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 PRINTS PR00681 Ribosomal protein S1 signature 84 103 6.4E-97 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 PRINTS PR00681 Ribosomal protein S1 signature 330 348 6.4E-97 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 PRINTS PR00681 Ribosomal protein S1 signature 126 143 6.4E-97 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 PRINTS PR00681 Ribosomal protein S1 signature 212 233 6.4E-97 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 PRINTS PR00681 Ribosomal protein S1 signature 108 124 6.4E-97 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 PRINTS PR00681 Ribosomal protein S1 signature 290 309 6.4E-97 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 SMART SM00316 362 434 1.7E-21 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_1759 49dd7e26d2909587743db5408d84d536 557 SMART SM00316 449 520 1.7E-17 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_1759 49dd7e26d2909587743db5408d84d536 557 SMART SM00316 275 347 8.1E-27 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_1759 49dd7e26d2909587743db5408d84d536 557 SMART SM00316 190 260 1.4E-27 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_1759 49dd7e26d2909587743db5408d84d536 557 SMART SM00316 19 87 4.3E-5 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_1759 49dd7e26d2909587743db5408d84d536 557 SMART SM00316 103 171 3.8E-8 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_1759 49dd7e26d2909587743db5408d84d536 557 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 4.0E-231 T 10-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 VF_1759 49dd7e26d2909587743db5408d84d536 557 SUPERFAMILY SSF50249 106 184 1.07E-13 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1759 49dd7e26d2909587743db5408d84d536 557 SUPERFAMILY SSF50249 4 112 1.72E-18 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1759 49dd7e26d2909587743db5408d84d536 557 Gene3D G3DSA:2.40.50.140 445 528 4.9E-19 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 SUPERFAMILY SSF50249 429 534 1.72E-22 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1759 49dd7e26d2909587743db5408d84d536 557 Pfam PF00575 S1 RNA binding domain 104 171 1.1E-9 T 10-10-2018 IPR003029 S1 domain GO:0003676 VF_1759 49dd7e26d2909587743db5408d84d536 557 Pfam PF00575 S1 RNA binding domain 362 434 1.9E-21 T 10-10-2018 IPR003029 S1 domain GO:0003676 VF_1759 49dd7e26d2909587743db5408d84d536 557 Pfam PF00575 S1 RNA binding domain 275 347 4.1E-21 T 10-10-2018 IPR003029 S1 domain GO:0003676 VF_1759 49dd7e26d2909587743db5408d84d536 557 Pfam PF00575 S1 RNA binding domain 18 86 8.9E-8 T 10-10-2018 IPR003029 S1 domain GO:0003676 VF_1759 49dd7e26d2909587743db5408d84d536 557 Pfam PF00575 S1 RNA binding domain 449 520 3.2E-12 T 10-10-2018 IPR003029 S1 domain GO:0003676 VF_1759 49dd7e26d2909587743db5408d84d536 557 Pfam PF00575 S1 RNA binding domain 189 260 1.7E-21 T 10-10-2018 IPR003029 S1 domain GO:0003676 VF_1759 49dd7e26d2909587743db5408d84d536 557 PIRSF PIRSF002111 1 534 2.5E-219 T 10-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 VF_1759 49dd7e26d2909587743db5408d84d536 557 SUPERFAMILY SSF50249 363 447 1.42E-21 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1759 49dd7e26d2909587743db5408d84d536 557 SUPERFAMILY SSF50249 255 364 1.42E-28 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1759 49dd7e26d2909587743db5408d84d536 557 Gene3D G3DSA:2.40.50.140 187 268 1.3E-27 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 Gene3D G3DSA:2.40.50.140 6 97 1.0E-17 T 10-10-2018 VF_1759 49dd7e26d2909587743db5408d84d536 557 SUPERFAMILY SSF50249 189 277 5.3E-27 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1141 daab57c506f94232310cacc00f97ece1 278 SUPERFAMILY SSF56112 11 252 3.79E-31 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily VF_1141 daab57c506f94232310cacc00f97ece1 278 Gene3D G3DSA:3.90.1200.10 92 276 1.1E-14 T 10-10-2018 VF_1141 daab57c506f94232310cacc00f97ece1 278 Pfam PF01636 Phosphotransferase enzyme family 14 209 2.1E-17 T 10-10-2018 IPR002575 Aminoglycoside phosphotransferase VF_1141 daab57c506f94232310cacc00f97ece1 278 TIGRFAM TIGR02721 ycfN_thiK: thiamine kinase 16 269 9.1E-103 T 10-10-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 Gene3D G3DSA:3.20.20.330 4 341 2.0E-125 T 10-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 SUPERFAMILY SSF82282 8 401 3.66E-117 T 10-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 SUPERFAMILY SSF47644 655 741 1.83E-28 T 10-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 PIRSF PIRSF000381 4 1198 0.0 T 10-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 941 1211 1.8E-122 T 10-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 SMART SM01018 659 742 9.1E-44 T 10-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 SUPERFAMILY SSF56507 904 1226 1.31E-130 T 10-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 Pfam PF02574 Homocysteine S-methyltransferase 19 324 1.8E-79 T 10-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 Gene3D G3DSA:3.10.196.10 910 1226 2.5E-144 T 10-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 Pfam PF02607 B12 binding domain 661 735 1.4E-24 T 10-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 Pfam PF02310 B12 binding domain 750 843 6.9E-18 T 10-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 Pfam PF00809 Pterin binding enzyme 362 600 5.7E-58 T 10-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 SUPERFAMILY SSF51717 358 632 1.44E-86 T 10-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 Gene3D G3DSA:3.20.20.20 342 644 7.5E-129 T 10-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 SUPERFAMILY SSF52242 747 896 5.89E-45 T 10-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 Gene3D G3DSA:1.10.288.10 939 1095 2.5E-144 T 10-10-2018 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 Gene3D G3DSA:3.40.50.280 746 897 4.2E-56 T 10-10-2018 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 Gene3D G3DSA:1.10.1240.10 651 739 5.2E-40 T 10-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0337 bb09df79cda7037f44ba29275fa55a98 1226 TIGRFAM TIGR02082 metH: methionine synthase 15 1195 0.0 T 10-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_1935 4b8e361fe031d4476b5148f01d48e793 243 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 10 242 1.2E-98 T 10-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1935 4b8e361fe031d4476b5148f01d48e793 243 Pfam PF00929 Exonuclease 12 179 2.0E-37 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_1935 4b8e361fe031d4476b5148f01d48e793 243 Gene3D G3DSA:3.30.420.10 3 193 2.0E-56 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_1935 4b8e361fe031d4476b5148f01d48e793 243 SMART SM00479 10 188 9.2E-50 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_1935 4b8e361fe031d4476b5148f01d48e793 243 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 9 228 7.8E-82 T 10-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1935 4b8e361fe031d4476b5148f01d48e793 243 SUPERFAMILY SSF53098 8 189 7.17E-54 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_2067 74747003f6978582572bed0bd80064f9 321 Gene3D G3DSA:1.10.10.10 155 230 8.8E-18 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2067 74747003f6978582572bed0bd80064f9 321 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 275 301 - T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2067 74747003f6978582572bed0bd80064f9 321 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 78 304 1.0E-35 T 10-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VF_2067 74747003f6978582572bed0bd80064f9 321 Pfam PF04545 Sigma-70, region 4 250 303 1.1E-15 T 10-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VF_2067 74747003f6978582572bed0bd80064f9 321 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 106 119 - T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2067 74747003f6978582572bed0bd80064f9 321 Pfam PF04542 Sigma-70 region 2 82 151 3.3E-21 T 10-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VF_2067 74747003f6978582572bed0bd80064f9 321 Gene3D G3DSA:1.10.601.10 67 154 3.7E-46 T 10-10-2018 VF_2067 74747003f6978582572bed0bd80064f9 321 Gene3D G3DSA:1.10.10.10 232 309 3.4E-18 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2067 74747003f6978582572bed0bd80064f9 321 SUPERFAMILY SSF88946 44 152 1.57E-44 T 10-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VF_2067 74747003f6978582572bed0bd80064f9 321 Pfam PF00140 Sigma-70 factor, region 1.2 44 77 7.5E-11 T 10-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_2067 74747003f6978582572bed0bd80064f9 321 SUPERFAMILY SSF88659 216 311 9.35E-22 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_2067 74747003f6978582572bed0bd80064f9 321 PRINTS PR00046 Major sigma-70 factor signature 130 138 2.6E-26 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2067 74747003f6978582572bed0bd80064f9 321 PRINTS PR00046 Major sigma-70 factor signature 254 266 2.6E-26 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2067 74747003f6978582572bed0bd80064f9 321 PRINTS PR00046 Major sigma-70 factor signature 275 290 2.6E-26 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2067 74747003f6978582572bed0bd80064f9 321 PRINTS PR00046 Major sigma-70 factor signature 106 119 2.6E-26 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2067 74747003f6978582572bed0bd80064f9 321 PRINTS PR00046 Major sigma-70 factor signature 290 301 2.6E-26 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VF_2067 74747003f6978582572bed0bd80064f9 321 SUPERFAMILY SSF88659 155 228 4.1E-15 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_2067 74747003f6978582572bed0bd80064f9 321 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 37 316 2.6E-136 T 10-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_2067 74747003f6978582572bed0bd80064f9 321 Pfam PF04539 Sigma-70 region 3 162 236 2.6E-21 T 10-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 VF_2067 74747003f6978582572bed0bd80064f9 321 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 3 316 39.012 T 10-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_A0027 c347018b54109f4ad88b18dfd74b61e0 414 Gene3D G3DSA:3.20.20.70 4 355 4.2E-113 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A0027 c347018b54109f4ad88b18dfd74b61e0 414 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 346 2.3E-58 T 10-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 VF_A0027 c347018b54109f4ad88b18dfd74b61e0 414 SUPERFAMILY SSF51395 5 349 1.39E-97 T 10-10-2018 VF_0924 ebc75c5273b0127211447a4113d2e01b 442 Pfam PF03553 Na+/H+ antiporter family 150 436 7.9E-75 T 10-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 VF_0924 ebc75c5273b0127211447a4113d2e01b 442 Pfam PF13726 Na+-H+ antiporter family 2 88 1.0E-34 T 10-10-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal VF_0924 ebc75c5273b0127211447a4113d2e01b 442 PRINTS PR00173 Glutamate-aspartate symporter signature 20 40 2.8E-5 T 10-10-2018 VF_0924 ebc75c5273b0127211447a4113d2e01b 442 PRINTS PR00173 Glutamate-aspartate symporter signature 375 394 2.8E-5 T 10-10-2018 VF_A0877 d5e600bfa9f68c015b384252a307044a 213 SUPERFAMILY SSF52540 10 188 4.79E-22 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0877 d5e600bfa9f68c015b384252a307044a 213 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 13 184 8.7E-15 T 10-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain VF_A0877 d5e600bfa9f68c015b384252a307044a 213 Gene3D G3DSA:3.40.50.300 11 212 1.7E-24 T 10-10-2018 VF_2341 ce00f910d214ba9969f561a24ad82dac 301 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 12 286 3.2E-73 T 10-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 VF_2341 ce00f910d214ba9969f561a24ad82dac 301 SUPERFAMILY SSF161111 9 207 1.7E-51 T 10-10-2018 IPR027469 Cation efflux transmembrane domain superfamily VF_2341 ce00f910d214ba9969f561a24ad82dac 301 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 286 3.3E-26 T 10-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain VF_2341 ce00f910d214ba9969f561a24ad82dac 301 SUPERFAMILY SSF160240 210 287 8.24E-25 T 10-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 VF_2341 ce00f910d214ba9969f561a24ad82dac 301 Gene3D G3DSA:3.30.70.1350 207 290 1.8E-30 T 10-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 VF_2341 ce00f910d214ba9969f561a24ad82dac 301 Pfam PF01545 Cation efflux family 14 206 2.3E-42 T 10-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 VF_2341 ce00f910d214ba9969f561a24ad82dac 301 Gene3D G3DSA:1.20.1510.10 8 206 4.3E-60 T 10-10-2018 IPR027469 Cation efflux transmembrane domain superfamily VF_0445 9a08923a9eca86d6466b553f77b254dd 234 Gene3D G3DSA:3.40.50.150 2 228 5.5E-52 T 10-10-2018 VF_0445 9a08923a9eca86d6466b553f77b254dd 234 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 108 114 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VF_0445 9a08923a9eca86d6466b553f77b254dd 234 SUPERFAMILY SSF53335 4 175 3.29E-30 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_0445 9a08923a9eca86d6466b553f77b254dd 234 Pfam PF05175 Methyltransferase small domain 37 121 5.2E-14 T 10-10-2018 IPR007848 Methyltransferase small domain GO:0008168 VF_0445 9a08923a9eca86d6466b553f77b254dd 234 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 40 54 4.6E-5 T 10-10-2018 VF_0445 9a08923a9eca86d6466b553f77b254dd 234 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 105 117 4.6E-5 T 10-10-2018 VF_0445 9a08923a9eca86d6466b553f77b254dd 234 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 135 159 4.6E-5 T 10-10-2018 VF_0445 9a08923a9eca86d6466b553f77b254dd 234 Hamap MF_01872 tRNA1(Val) (adenine(37)-N6)-methyltransferase [yfiC]. 3 233 55.063 T 10-10-2018 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase GO:0016430 VF_1662 2beb99b9a272a4c3019d96fc328b9474 76 TIGRFAM TIGR02647 DNA: TIGR02647 family protein 1 76 2.0E-31 T 10-10-2018 IPR013468 Conserved hypothetical protein CHP02647 VF_1662 2beb99b9a272a4c3019d96fc328b9474 76 Pfam PF06146 Phosphate-starvation-inducible E 7 71 1.3E-12 T 10-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like VF_0512 fb747ee1bca5732deaa4866da45302f6 270 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 5 230 4.6E-27 T 10-10-2018 IPR017592 Pilus assembly, Flp-type CpaB VF_0512 fb747ee1bca5732deaa4866da45302f6 270 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 118 230 3.5E-12 T 10-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain VF_0176 737f1f14b502ab466d4453687ad7dcff 265 SUPERFAMILY SSF51569 1 257 1.19E-95 T 10-10-2018 VF_0176 737f1f14b502ab466d4453687ad7dcff 265 Gene3D G3DSA:3.20.20.70 1 263 1.3E-95 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0176 737f1f14b502ab466d4453687ad7dcff 265 Pfam PF00793 DAHP synthetase I family 2 254 1.1E-57 T 10-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VF_0176 737f1f14b502ab466d4453687ad7dcff 265 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 1 255 8.5E-112 T 10-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VF_A0832 23302377793cff799712f1750608331d 1058 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 855 866 - T 10-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VF_A0832 23302377793cff799712f1750608331d 1058 Gene3D G3DSA:3.20.20.220 165 532 4.6E-128 T 10-10-2018 VF_A0832 23302377793cff799712f1750608331d 1058 PIRSF PIRSF000197 13 1058 0.0 T 10-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 VF_A0832 23302377793cff799712f1750608331d 1058 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 82 196 3.5E-45 T 10-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 VF_A0832 23302377793cff799712f1750608331d 1058 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 534 1052 5.2E-222 T 10-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 VF_A0832 23302377793cff799712f1750608331d 1058 SUPERFAMILY SSF51730 199 540 8.24E-110 T 10-10-2018 IPR029041 FAD-linked oxidoreductase-like VF_A0832 23302377793cff799712f1750608331d 1058 Gene3D G3DSA:3.40.605.10 587 1053 7.1E-141 T 10-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VF_A0832 23302377793cff799712f1750608331d 1058 Pfam PF00171 Aldehyde dehydrogenase family 595 1053 1.2E-108 T 10-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VF_A0832 23302377793cff799712f1750608331d 1058 SUPERFAMILY SSF81935 26 198 8.11E-64 T 10-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 VF_A0832 23302377793cff799712f1750608331d 1058 Pfam PF01619 Proline dehydrogenase 209 498 1.8E-90 T 10-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 VF_A0832 23302377793cff799712f1750608331d 1058 SUPERFAMILY SSF53720 587 1055 7.85E-119 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VF_A0832 23302377793cff799712f1750608331d 1058 Gene3D G3DSA:3.40.309.10 830 1022 7.1E-141 T 10-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VF_A0028 deb0fccd4810a7a33d3e0810c674c8ca 399 SUPERFAMILY SSF103473 5 387 8.37E-49 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0028 deb0fccd4810a7a33d3e0810c674c8ca 399 Gene3D G3DSA:1.20.1250.20 1 197 1.9E-16 T 10-10-2018 VF_A0028 deb0fccd4810a7a33d3e0810c674c8ca 399 Gene3D G3DSA:1.20.1250.20 206 390 2.5E-23 T 10-10-2018 VF_A0028 deb0fccd4810a7a33d3e0810c674c8ca 399 Pfam PF07690 Major Facilitator Superfamily 212 391 8.6E-21 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_A0028 deb0fccd4810a7a33d3e0810c674c8ca 399 Pfam PF07690 Major Facilitator Superfamily 11 204 1.5E-12 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_A0769 be724fb26ff3a6439d8308106b89ce67 218 Pfam PF10014 2OG-Fe dioxygenase 24 208 6.6E-53 T 10-10-2018 IPR018724 2OG-Fe dioxygenase VF_A0769 be724fb26ff3a6439d8308106b89ce67 218 Gene3D G3DSA:2.60.120.620 1 215 5.0E-52 T 10-10-2018 VF_0851 5b638d2f613464144dfcea413c923b49 563 SUPERFAMILY SSF53448 8 240 3.38E-34 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0851 5b638d2f613464144dfcea413c923b49 563 Gene3D G3DSA:3.90.550.10 7 213 3.4E-27 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0851 5b638d2f613464144dfcea413c923b49 563 Pfam PF00535 Glycosyl transferase family 2 8 130 2.8E-23 T 10-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VF_0851 5b638d2f613464144dfcea413c923b49 563 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 339 554 2.5E-10 T 10-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VF_A0506 56d4fc61cbf7de68b0d0efe6aec2ec3d 581 SUPERFAMILY SSF109604 398 568 1.29E-33 T 10-10-2018 VF_A0506 56d4fc61cbf7de68b0d0efe6aec2ec3d 581 Pfam PF13487 HD domain 457 520 2.6E-18 T 10-10-2018 VF_A0506 56d4fc61cbf7de68b0d0efe6aec2ec3d 581 SMART SM00471 402 539 1.9E-5 T 10-10-2018 IPR003607 HD/PDEase domain VF_A0506 56d4fc61cbf7de68b0d0efe6aec2ec3d 581 Gene3D G3DSA:1.10.3210.10 382 581 1.4E-69 T 10-10-2018 VF_1262 405141b6eb05346791f9002982ad4690 191 Pfam PF00462 Glutaredoxin 108 173 3.3E-16 T 10-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 VF_1262 405141b6eb05346791f9002982ad4690 191 PRINTS PR00160 Glutaredoxin signature 156 169 8.1E-8 T 10-10-2018 IPR014025 Glutaredoxin subgroup VF_1262 405141b6eb05346791f9002982ad4690 191 PRINTS PR00160 Glutaredoxin signature 107 125 8.1E-8 T 10-10-2018 IPR014025 Glutaredoxin subgroup VF_1262 405141b6eb05346791f9002982ad4690 191 PRINTS PR00160 Glutaredoxin signature 170 183 8.1E-8 T 10-10-2018 IPR014025 Glutaredoxin subgroup VF_1262 405141b6eb05346791f9002982ad4690 191 ProSitePatterns PS00195 Glutaredoxin active site. 109 125 - T 10-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 VF_1262 405141b6eb05346791f9002982ad4690 191 Gene3D G3DSA:3.40.30.10 107 188 3.3E-18 T 10-10-2018 VF_1262 405141b6eb05346791f9002982ad4690 191 SUPERFAMILY SSF52833 108 183 9.83E-18 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1011 acd6606e2fd4c58390a04763290ea1cd 352 Pfam PF13609 Gram-negative porin 8 328 2.4E-17 T 10-10-2018 VF_1011 acd6606e2fd4c58390a04763290ea1cd 352 SUPERFAMILY SSF56935 42 351 1.97E-23 T 10-10-2018 VF_A0491 b059b1b666a95e4e8b1ad88b4ef05365 334 Pfam PF06863 Protein of unknown function (DUF1254) 45 109 8.0E-7 T 10-10-2018 IPR010679 Domain of unknown function DUF1254 VF_A0491 b059b1b666a95e4e8b1ad88b4ef05365 334 Pfam PF06742 Protein of unknown function (DUF1214) 237 315 9.7E-8 T 10-10-2018 IPR010621 Domain of unknown function DUF1214 VF_A0491 b059b1b666a95e4e8b1ad88b4ef05365 334 SUPERFAMILY SSF160935 3 315 2.62E-54 T 10-10-2018 VF_A0491 b059b1b666a95e4e8b1ad88b4ef05365 334 Gene3D G3DSA:2.60.120.1600 219 326 4.1E-10 T 10-10-2018 VF_0537 e5cd2fb19b5167fc4d31e79cdd3d1891 389 Gene3D G3DSA:3.40.1160.10 1 257 2.1E-86 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_0537 e5cd2fb19b5167fc4d31e79cdd3d1891 389 SUPERFAMILY SSF53633 4 243 2.36E-70 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_0537 e5cd2fb19b5167fc4d31e79cdd3d1891 389 SUPERFAMILY SSF55021 307 377 1.68E-5 T 10-10-2018 VF_0537 e5cd2fb19b5167fc4d31e79cdd3d1891 389 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 57 269 2.4E-74 T 10-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_0537 e5cd2fb19b5167fc4d31e79cdd3d1891 389 Gene3D G3DSA:3.30.70.260 307 388 1.2E-6 T 10-10-2018 VF_0537 e5cd2fb19b5167fc4d31e79cdd3d1891 389 PIRSF PIRSF000726 294 382 0.049 T 10-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_0537 e5cd2fb19b5167fc4d31e79cdd3d1891 389 PIRSF PIRSF000726 1 62 7.3E-21 T 10-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_0537 e5cd2fb19b5167fc4d31e79cdd3d1891 389 PIRSF PIRSF000726 57 312 2.1E-75 T 10-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_0537 e5cd2fb19b5167fc4d31e79cdd3d1891 389 Pfam PF00696 Amino acid kinase family 3 228 1.8E-47 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VF_0537 e5cd2fb19b5167fc4d31e79cdd3d1891 389 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 10-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_1956 92246e0ec33dd31e961fc60519579c74 400 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 239 7.9E-37 T 10-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 VF_1956 92246e0ec33dd31e961fc60519579c74 400 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 398 1.9E-167 T 10-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 VF_1956 92246e0ec33dd31e961fc60519579c74 400 SUPERFAMILY SSF69055 301 399 6.8E-30 T 10-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 VF_1956 92246e0ec33dd31e961fc60519579c74 400 SUPERFAMILY SSF51735 2 150 3.94E-47 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1956 92246e0ec33dd31e961fc60519579c74 400 Gene3D G3DSA:3.40.50.720 1 150 2.8E-53 T 10-10-2018 VF_1956 92246e0ec33dd31e961fc60519579c74 400 Gene3D G3DSA:1.10.1740.10 312 400 1.2E-26 T 10-10-2018 VF_1956 92246e0ec33dd31e961fc60519579c74 400 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 391 3.3E-38 T 10-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 VF_1956 92246e0ec33dd31e961fc60519579c74 400 SUPERFAMILY SSF55347 126 274 1.99E-62 T 10-10-2018 VF_1956 92246e0ec33dd31e961fc60519579c74 400 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 396 45.88 T 10-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 VF_1956 92246e0ec33dd31e961fc60519579c74 400 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 6.2E-47 T 10-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 VF_1956 92246e0ec33dd31e961fc60519579c74 400 PIRSF PIRSF006205 1 400 2.1E-153 T 10-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 VF_2267 d5bb14470b5df36f4dc9cd9c733fbbc9 388 Gene3D G3DSA:3.90.1150.10 249 386 1.2E-50 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_2267 d5bb14470b5df36f4dc9cd9c733fbbc9 388 PIRSF PIRSF001434 1 384 8.7E-131 T 10-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VF_2267 d5bb14470b5df36f4dc9cd9c733fbbc9 388 SUPERFAMILY SSF53383 9 381 6.69E-113 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_2267 d5bb14470b5df36f4dc9cd9c733fbbc9 388 Gene3D G3DSA:3.40.640.10 3 248 1.5E-82 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_2267 d5bb14470b5df36f4dc9cd9c733fbbc9 388 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 191 205 - T 10-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VF_2267 d5bb14470b5df36f4dc9cd9c733fbbc9 388 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 7 381 2.4E-135 T 10-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VF_2267 d5bb14470b5df36f4dc9cd9c733fbbc9 388 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 4 382 4.8E-194 T 10-10-2018 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48|MetaCyc: PWY-801 VF_A0865 fc5dc086fdf41d264d8444418b94d682 631 Gene3D G3DSA:3.30.450.20 59 270 4.4E-45 T 10-10-2018 VF_A0865 fc5dc086fdf41d264d8444418b94d682 631 SMART SM00304 300 354 5.2E-6 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0865 fc5dc086fdf41d264d8444418b94d682 631 SUPERFAMILY SSF103190 86 182 3.84E-9 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_A0865 fc5dc086fdf41d264d8444418b94d682 631 Gene3D G3DSA:3.30.450.20 67 172 4.4E-45 T 10-10-2018 VF_A0865 fc5dc086fdf41d264d8444418b94d682 631 SMART SM00283 369 630 4.9E-60 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0865 fc5dc086fdf41d264d8444418b94d682 631 SUPERFAMILY SSF58104 322 631 5.75E-67 T 10-10-2018 VF_A0865 fc5dc086fdf41d264d8444418b94d682 631 Gene3D G3DSA:1.10.287.950 300 631 9.8E-63 T 10-10-2018 VF_A0865 fc5dc086fdf41d264d8444418b94d682 631 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 433 592 1.8E-39 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0865 fc5dc086fdf41d264d8444418b94d682 631 Pfam PF02743 Cache domain 41 262 6.0E-25 T 10-10-2018 IPR033479 Double Cache domain 1 VF_0985 f21c3828b88cc7b0b2815a40fba79b7b 827 SMART SM00052 575 821 2.0E-98 T 10-10-2018 IPR001633 EAL domain VF_0985 f21c3828b88cc7b0b2815a40fba79b7b 827 SMART SM00267 393 565 2.0E-48 T 10-10-2018 IPR000160 GGDEF domain VF_0985 f21c3828b88cc7b0b2815a40fba79b7b 827 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 401 560 3.2E-38 T 10-10-2018 IPR000160 GGDEF domain VF_0985 f21c3828b88cc7b0b2815a40fba79b7b 827 Gene3D G3DSA:3.30.450.20 225 337 4.1E-18 T 10-10-2018 VF_0985 f21c3828b88cc7b0b2815a40fba79b7b 827 Gene3D G3DSA:3.20.20.450 578 827 2.1E-89 T 10-10-2018 IPR035919 EAL domain superfamily VF_0985 f21c3828b88cc7b0b2815a40fba79b7b 827 Pfam PF08269 Cache domain 44 329 7.5E-79 T 10-10-2018 IPR004010 Double Cache domain 2 VF_0985 f21c3828b88cc7b0b2815a40fba79b7b 827 Gene3D G3DSA:3.30.70.270 398 577 2.2E-51 T 10-10-2018 VF_0985 f21c3828b88cc7b0b2815a40fba79b7b 827 Pfam PF00563 EAL domain 581 816 7.7E-70 T 10-10-2018 IPR001633 EAL domain VF_0985 f21c3828b88cc7b0b2815a40fba79b7b 827 Pfam PF00990 Diguanylate cyclase, GGDEF domain 404 557 4.8E-43 T 10-10-2018 IPR000160 GGDEF domain VF_0985 f21c3828b88cc7b0b2815a40fba79b7b 827 SMART SM01049 74 167 2.3E-27 T 10-10-2018 IPR033480 Single Cache domain 2 VF_0985 f21c3828b88cc7b0b2815a40fba79b7b 827 SMART SM01049 196 278 0.027 T 10-10-2018 IPR033480 Single Cache domain 2 VF_0985 f21c3828b88cc7b0b2815a40fba79b7b 827 Gene3D G3DSA:3.30.450.20 59 224 1.8E-39 T 10-10-2018 VF_0985 f21c3828b88cc7b0b2815a40fba79b7b 827 SUPERFAMILY SSF55073 409 567 4.16E-43 T 10-10-2018 IPR029787 Nucleotide cyclase VF_0985 f21c3828b88cc7b0b2815a40fba79b7b 827 SUPERFAMILY SSF141868 580 824 1.19E-82 T 10-10-2018 IPR035919 EAL domain superfamily VF_0828 63e43cfbbab1b6e0d5342da744b1feec 261 Gene3D G3DSA:1.10.3470.10 28 260 1.2E-11 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_0828 63e43cfbbab1b6e0d5342da744b1feec 261 SUPERFAMILY SSF81345 2 257 1.96E-42 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_0828 63e43cfbbab1b6e0d5342da744b1feec 261 Pfam PF00950 ABC 3 transport family 1 256 8.1E-76 T 10-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 VF_0727 94ff7b9cb42219490705e383da869c0b 255 Pfam PF04205 FMN-binding domain 142 237 2.0E-14 T 10-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 VF_0727 94ff7b9cb42219490705e383da869c0b 255 PIRSF PIRSF009437 1 255 5.4E-104 T 10-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 VF_0727 94ff7b9cb42219490705e383da869c0b 255 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 6 252 35.107 T 10-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 VF_0727 94ff7b9cb42219490705e383da869c0b 255 SMART SM00900 142 240 5.3E-32 T 10-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 VF_0727 94ff7b9cb42219490705e383da869c0b 255 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 5 248 4.5E-93 T 10-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 VF_2572 f40782432e0c035e36656b6e380e687a 294 Gene3D G3DSA:3.90.1530.30 54 117 1.6E-26 T 10-10-2018 VF_2572 f40782432e0c035e36656b6e380e687a 294 Pfam PF02195 ParB-like nuclease domain 43 131 1.4E-27 T 10-10-2018 IPR003115 ParB/Sulfiredoxin VF_2572 f40782432e0c035e36656b6e380e687a 294 Gene3D G3DSA:1.10.10.2830 118 231 1.1E-33 T 10-10-2018 VF_2572 f40782432e0c035e36656b6e380e687a 294 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 39 213 1.2E-57 T 10-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 VF_2572 f40782432e0c035e36656b6e380e687a 294 SMART SM00470 41 131 2.2E-35 T 10-10-2018 IPR003115 ParB/Sulfiredoxin VF_2572 f40782432e0c035e36656b6e380e687a 294 SUPERFAMILY SSF110849 44 175 1.46E-32 T 10-10-2018 IPR036086 ParB/Sulfiredoxin superfamily VF_0883 2f6bdf7d8b5774591e1b3f2cf2918f13 480 Pfam PF11066 Protein of unknown function (DUF2867) 334 466 4.9E-15 T 10-10-2018 IPR021295 Protein of unknown function DUF2867 VF_0883 2f6bdf7d8b5774591e1b3f2cf2918f13 480 SUPERFAMILY SSF51735 4 293 8.79E-39 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0883 2f6bdf7d8b5774591e1b3f2cf2918f13 480 Gene3D G3DSA:3.40.50.720 3 248 1.1E-25 T 10-10-2018 VF_0883 2f6bdf7d8b5774591e1b3f2cf2918f13 480 SUPERFAMILY SSF55961 332 455 5.65E-6 T 10-10-2018 VF_0883 2f6bdf7d8b5774591e1b3f2cf2918f13 480 Pfam PF13460 NAD(P)H-binding 9 123 4.6E-14 T 10-10-2018 IPR016040 NAD(P)-binding domain VF_2375 e7c6077924f0f8b4c531a92333175cf7 207 Pfam PF01914 MarC family integral membrane protein 4 204 1.4E-46 T 10-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 VF_2375 e7c6077924f0f8b4c531a92333175cf7 207 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 2 202 2.3E-42 T 10-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 VF_A0617 94e5b14740746d66d02ea6ff9d7a2413 548 Pfam PF09818 Predicted ATPase of the ABC class 1 435 4.8E-185 T 10-10-2018 IPR019195 ABC transporter, ATPase, putative VF_A0617 94e5b14740746d66d02ea6ff9d7a2413 548 SUPERFAMILY SSF52540 229 409 5.04E-8 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1034 a56d306beca77ccf110a08ac04bbf458 279 SUPERFAMILY SSF89550 1 275 1.14E-51 T 10-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 VF_1034 a56d306beca77ccf110a08ac04bbf458 279 Gene3D G3DSA:1.10.150.650 98 169 5.4E-79 T 10-10-2018 VF_1034 a56d306beca77ccf110a08ac04bbf458 279 Gene3D G3DSA:3.20.20.140 3 250 5.4E-79 T 10-10-2018 VF_1034 a56d306beca77ccf110a08ac04bbf458 279 SMART SM00481 3 70 8.6E-21 T 10-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal VF_1034 a56d306beca77ccf110a08ac04bbf458 279 Pfam PF02811 PHP domain 4 97 5.7E-9 T 10-10-2018 IPR004013 PHP domain GO:0003824 VF_0767 34d8b4bce7dc930ac00b1739e40a489e 418 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 155 6.9E-49 T 10-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VF_0767 34d8b4bce7dc930ac00b1739e40a489e 418 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 171 305 3.2E-48 T 10-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase VF_0767 34d8b4bce7dc930ac00b1739e40a489e 418 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 98 121 - T 10-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VF_0767 34d8b4bce7dc930ac00b1739e40a489e 418 SUPERFAMILY SSF69742 1 157 9.42E-47 T 10-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VF_0767 34d8b4bce7dc930ac00b1739e40a489e 418 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 417 30.32 T 10-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VF_0767 34d8b4bce7dc930ac00b1739e40a489e 418 SUPERFAMILY SSF51735 161 314 3.18E-36 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0767 34d8b4bce7dc930ac00b1739e40a489e 418 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 415 1.7E-139 T 10-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VF_0767 34d8b4bce7dc930ac00b1739e40a489e 418 SUPERFAMILY SSF69075 316 418 1.1E-27 T 10-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VF_0767 34d8b4bce7dc930ac00b1739e40a489e 418 Gene3D G3DSA:3.40.50.720 160 312 2.6E-43 T 10-10-2018 VF_0767 34d8b4bce7dc930ac00b1739e40a489e 418 PIRSF PIRSF000445 1 418 3.2E-153 T 10-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VF_0767 34d8b4bce7dc930ac00b1739e40a489e 418 Gene3D G3DSA:3.30.460.30 1 157 4.7E-55 T 10-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VF_0767 34d8b4bce7dc930ac00b1739e40a489e 418 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 319 411 2.5E-21 T 10-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VF_2003 e86c0a5b45cd244af8783a0e0b67c830 182 SMART SM01040 11 104 1.6E-24 T 10-10-2018 IPR003497 BRO N-terminal domain VF_2003 e86c0a5b45cd244af8783a0e0b67c830 182 Pfam PF02498 BRO family, N-terminal domain 14 101 4.2E-13 T 10-10-2018 IPR003497 BRO N-terminal domain VF_A0449 bf250ee15b39a4f10c9d2e542b1a6f05 81 Pfam PF09932 Uncharacterized conserved protein (DUF2164) 4 77 7.6E-30 T 10-10-2018 IPR018680 Protein of unknown function DUF2164 VF_A1016 ce0458747c4667a953ec8f00108b2926 864 Pfam PF00072 Response regulator receiver domain 745 860 6.3E-23 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A1016 ce0458747c4667a953ec8f00108b2926 864 SMART SM00388 356 421 8.5E-25 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A1016 ce0458747c4667a953ec8f00108b2926 864 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 469 582 5.7E-24 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A1016 ce0458747c4667a953ec8f00108b2926 864 SMART SM00448 743 860 1.4E-35 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A1016 ce0458747c4667a953ec8f00108b2926 864 Gene3D G3DSA:3.30.565.10 420 588 2.6E-45 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A1016 ce0458747c4667a953ec8f00108b2926 864 Gene3D G3DSA:3.40.50.2300 801 864 2.4E-21 T 10-10-2018 VF_A1016 ce0458747c4667a953ec8f00108b2926 864 SUPERFAMILY SSF47384 343 422 3.92E-22 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_A1016 ce0458747c4667a953ec8f00108b2926 864 SUPERFAMILY SSF55874 410 582 6.16E-41 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A1016 ce0458747c4667a953ec8f00108b2926 864 Gene3D G3DSA:1.10.287.130 322 419 2.7E-29 T 10-10-2018 VF_A1016 ce0458747c4667a953ec8f00108b2926 864 Pfam PF00512 His Kinase A (phospho-acceptor) domain 356 421 3.9E-19 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A1016 ce0458747c4667a953ec8f00108b2926 864 SUPERFAMILY SSF52172 740 862 4.27E-36 T 10-10-2018 IPR011006 CheY-like superfamily VF_A1016 ce0458747c4667a953ec8f00108b2926 864 PRINTS PR00344 Bacterial sensor protein C-terminal signature 544 562 3.6E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A1016 ce0458747c4667a953ec8f00108b2926 864 PRINTS PR00344 Bacterial sensor protein C-terminal signature 509 523 3.6E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A1016 ce0458747c4667a953ec8f00108b2926 864 PRINTS PR00344 Bacterial sensor protein C-terminal signature 568 581 3.6E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A1016 ce0458747c4667a953ec8f00108b2926 864 PRINTS PR00344 Bacterial sensor protein C-terminal signature 527 537 3.6E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A1016 ce0458747c4667a953ec8f00108b2926 864 SMART SM00387 468 584 4.1E-31 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A1016 ce0458747c4667a953ec8f00108b2926 864 Gene3D G3DSA:3.40.50.12330 734 799 5.9E-19 T 10-10-2018 VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 Gene3D G3DSA:2.60.40.10 94 188 3.3E-22 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 Gene3D G3DSA:2.60.40.10 189 280 3.5E-18 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 Gene3D G3DSA:2.10.10.20 17 88 1.8E-14 T 10-10-2018 VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 Pfam PF06483 Chitinase C 807 972 2.0E-72 T 10-10-2018 IPR009470 Chitinase, C-terminal KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 Pfam PF00704 Glycosyl hydrolases family 18 320 779 8.1E-85 T 10-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 SUPERFAMILY SSF51445 313 783 1.05E-72 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 SUPERFAMILY SSF51055 23 86 2.16E-15 T 10-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 Pfam PF14600 Cellulose-binding domain 998 1050 2.2E-17 T 10-10-2018 IPR032798 Endoglucanase Z, cellulose-binding domain KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 SMART SM00495 38 83 7.4E-9 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 SMART SM00495 1008 1050 1.3E-8 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 Gene3D G3DSA:3.20.20.80 751 779 8.7E-12 T 10-10-2018 VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 Gene3D G3DSA:2.10.10.20 995 1052 1.3E-19 T 10-10-2018 VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 SMART SM00636 319 779 1.0E-118 T 10-10-2018 IPR011583 Chitinase II GO:0008061 VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 Gene3D G3DSA:3.20.20.80 298 643 1.5E-79 T 10-10-2018 VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 Gene3D G3DSA:3.10.50.10 725 750 8.7E-12 T 10-10-2018 IPR029070 Chitinase insertion domain superfamily VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 ProSitePatterns PS01095 Chitinases family 18 active site. 468 476 - T 10-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 SUPERFAMILY SSF51055 996 1052 2.16E-14 T 10-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_0986 419d4e10a3c330377d0a0bd4b92ca3a5 1053 SUPERFAMILY SSF54556 626 749 8.14E-15 T 10-10-2018 IPR029070 Chitinase insertion domain superfamily VF_A0808 b504c2e2c44a9aae01c289a41ae2ec85 715 SUPERFAMILY SSF51445 234 609 4.88E-111 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_A0808 b504c2e2c44a9aae01c289a41ae2ec85 715 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 617 714 3.3E-17 T 10-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 VF_A0808 b504c2e2c44a9aae01c289a41ae2ec85 715 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 80 715 40.906 T 10-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 VF_A0808 b504c2e2c44a9aae01c289a41ae2ec85 715 SUPERFAMILY SSF81296 105 215 4.72E-24 T 10-10-2018 IPR014756 Immunoglobulin E-set VF_A0808 b504c2e2c44a9aae01c289a41ae2ec85 715 Gene3D G3DSA:3.20.20.80 223 601 3.2E-161 T 10-10-2018 VF_A0808 b504c2e2c44a9aae01c289a41ae2ec85 715 Pfam PF00128 Alpha amylase, catalytic domain 264 421 1.1E-9 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_A0808 b504c2e2c44a9aae01c289a41ae2ec85 715 Gene3D G3DSA:2.60.40.10 1 210 3.2E-46 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A0808 b504c2e2c44a9aae01c289a41ae2ec85 715 SUPERFAMILY SSF81296 8 93 3.85E-11 T 10-10-2018 IPR014756 Immunoglobulin E-set VF_A0808 b504c2e2c44a9aae01c289a41ae2ec85 715 SMART SM00642 239 595 1.6E-6 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_A0808 b504c2e2c44a9aae01c289a41ae2ec85 715 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 117 196 1.9E-17 T 10-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 VF_A0808 b504c2e2c44a9aae01c289a41ae2ec85 715 SUPERFAMILY SSF51011 612 714 1.23E-29 T 10-10-2018 VF_A0808 b504c2e2c44a9aae01c289a41ae2ec85 715 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 104 712 1.0E-246 T 10-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 VF_A0808 b504c2e2c44a9aae01c289a41ae2ec85 715 Gene3D G3DSA:2.60.40.1180 612 714 4.2E-29 T 10-10-2018 IPR013780 Glycosyl hydrolase, all-beta VF_A0808 b504c2e2c44a9aae01c289a41ae2ec85 715 PIRSF PIRSF000463 1 715 7.8E-273 T 10-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 VF_A0002 909ea5274678c2a0bb982ea2e7b4d625 115 Pfam PF01042 Endoribonuclease L-PSP 7 113 3.4E-26 T 10-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 VF_A0002 909ea5274678c2a0bb982ea2e7b4d625 115 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 90 108 - T 10-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 VF_A0002 909ea5274678c2a0bb982ea2e7b4d625 115 Gene3D G3DSA:3.30.1330.40 1 115 8.2E-43 T 10-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VF_A0002 909ea5274678c2a0bb982ea2e7b4d625 115 SUPERFAMILY SSF55298 4 113 5.81E-33 T 10-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VF_2044 c74970554fe7941e2eb1462ef31f7f74 432 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 210 420 7.7E-20 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_2044 c74970554fe7941e2eb1462ef31f7f74 432 SUPERFAMILY SSF160964 74 160 1.24E-7 T 10-10-2018 VF_2044 c74970554fe7941e2eb1462ef31f7f74 432 SUPERFAMILY SSF161098 175 416 9.68E-43 T 10-10-2018 IPR035906 MetI-like superfamily VF_2044 c74970554fe7941e2eb1462ef31f7f74 432 Gene3D G3DSA:1.10.3720.10 171 424 6.7E-48 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0160 27638be8af5bff7ba711928a98b327dd 667 SUPERFAMILY SSF81345 354 667 2.75E-65 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_A0160 27638be8af5bff7ba711928a98b327dd 667 SUPERFAMILY SSF81345 23 338 3.79E-65 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_A0160 27638be8af5bff7ba711928a98b327dd 667 Gene3D G3DSA:1.10.3470.10 358 667 6.4E-73 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_A0160 27638be8af5bff7ba711928a98b327dd 667 Pfam PF01032 FecCD transport family 27 338 1.2E-73 T 10-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VF_A0160 27638be8af5bff7ba711928a98b327dd 667 Pfam PF01032 FecCD transport family 371 667 1.5E-72 T 10-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VF_A0160 27638be8af5bff7ba711928a98b327dd 667 Gene3D G3DSA:1.10.3470.10 16 343 7.2E-77 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_1951 471ba83d6106223905ec7d69b95df58d 150 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 8 146 4.7E-61 T 10-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VF_1951 471ba83d6106223905ec7d69b95df58d 150 Pfam PF07977 FabA-like domain 17 141 5.0E-41 T 10-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VF_1951 471ba83d6106223905ec7d69b95df58d 150 SUPERFAMILY SSF54637 7 146 4.45E-50 T 10-10-2018 IPR029069 HotDog domain superfamily VF_1951 471ba83d6106223905ec7d69b95df58d 150 Gene3D G3DSA:3.10.129.10 3 150 4.2E-63 T 10-10-2018 VF_1951 471ba83d6106223905ec7d69b95df58d 150 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 8 149 36.852 T 10-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VF_A0801 ea36a3f9892ebe1eca6fb421109ebbf3 651 Pfam PF00128 Alpha amylase, catalytic domain 168 278 2.8E-8 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_A0801 ea36a3f9892ebe1eca6fb421109ebbf3 651 Gene3D G3DSA:2.60.40.1180 555 651 7.9E-11 T 10-10-2018 IPR013780 Glycosyl hydrolase, all-beta VF_A0801 ea36a3f9892ebe1eca6fb421109ebbf3 651 SUPERFAMILY SSF51011 558 649 1.08E-15 T 10-10-2018 VF_A0801 ea36a3f9892ebe1eca6fb421109ebbf3 651 SMART SM00642 137 539 1.1E-6 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_A0801 ea36a3f9892ebe1eca6fb421109ebbf3 651 SUPERFAMILY SSF51445 112 542 2.73E-106 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_A0801 ea36a3f9892ebe1eca6fb421109ebbf3 651 SUPERFAMILY SSF81296 7 125 2.55E-13 T 10-10-2018 IPR014756 Immunoglobulin E-set VF_A0801 ea36a3f9892ebe1eca6fb421109ebbf3 651 Gene3D G3DSA:2.60.40.10 1 115 5.4E-14 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A0801 ea36a3f9892ebe1eca6fb421109ebbf3 651 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 10 87 6.1E-6 T 10-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 VF_A0801 ea36a3f9892ebe1eca6fb421109ebbf3 651 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 8 629 5.2E-210 T 10-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 VF_A0801 ea36a3f9892ebe1eca6fb421109ebbf3 651 Gene3D G3DSA:3.20.20.80 116 550 1.9E-149 T 10-10-2018 VF_2507 649c277c4ca898c77da7d706367ebb34 378 Pfam PF01979 Amidohydrolase family 49 334 3.2E-12 T 10-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VF_2507 649c277c4ca898c77da7d706367ebb34 378 SUPERFAMILY SSF51556 52 317 3.98E-73 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_2507 649c277c4ca898c77da7d706367ebb34 378 PIRSF PIRSF039004 1 377 9.3E-134 T 10-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 VF_2507 649c277c4ca898c77da7d706367ebb34 378 Gene3D G3DSA:3.20.20.140 52 317 1.2E-122 T 10-10-2018 VF_2507 649c277c4ca898c77da7d706367ebb34 378 Gene3D G3DSA:2.30.40.10 5 363 1.2E-122 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_2507 649c277c4ca898c77da7d706367ebb34 378 SUPERFAMILY SSF51338 1 336 4.32E-13 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_2507 649c277c4ca898c77da7d706367ebb34 378 TIGRFAM TIGR03583 EF_0837: putative amidohydrolase, EF_0837/AHA_3915 family 2 365 3.2E-165 T 10-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 VF_2201 c4581e71bef6384686c962c8bf1ac411 354 Gene3D G3DSA:3.40.50.2000 9 161 2.3E-123 T 10-10-2018 VF_2201 c4581e71bef6384686c962c8bf1ac411 354 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 8 353 34.569 T 10-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2201 c4581e71bef6384686c962c8bf1ac411 354 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 185 330 7.0E-33 T 10-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 VF_2201 c4581e71bef6384686c962c8bf1ac411 354 SUPERFAMILY SSF53756 6 353 1.57E-126 T 10-10-2018 VF_2201 c4581e71bef6384686c962c8bf1ac411 354 Gene3D G3DSA:3.40.50.2000 162 319 2.3E-123 T 10-10-2018 VF_2201 c4581e71bef6384686c962c8bf1ac411 354 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 9 145 1.1E-46 T 10-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2201 c4581e71bef6384686c962c8bf1ac411 354 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 349 6.0E-118 T 10-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2177 f4ca2461aaaeb718d507a1e596115347 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 66 6.0E-13 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_2177 f4ca2461aaaeb718d507a1e596115347 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 1.1E-6 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_2177 f4ca2461aaaeb718d507a1e596115347 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 1.1E-6 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_2177 f4ca2461aaaeb718d507a1e596115347 201 Gene3D G3DSA:1.10.357.10 2 201 1.8E-71 T 10-10-2018 VF_2177 f4ca2461aaaeb718d507a1e596115347 201 SUPERFAMILY SSF46689 7 84 1.3E-15 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_2177 f4ca2461aaaeb718d507a1e596115347 201 SUPERFAMILY SSF48498 89 197 1.68E-9 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VF_1472 09955089f160fdfe4b66e65d7b64447f 61 PIRSF PIRSF037205 13 61 2.0E-27 T 10-10-2018 IPR017136 Uncharacterised conserved protein UCP037205 VF_1472 09955089f160fdfe4b66e65d7b64447f 61 Pfam PF10013 Uncharacterized protein conserved in bacteria (DUF2256) 17 55 2.2E-20 T 10-10-2018 IPR017136 Uncharacterised conserved protein UCP037205 VF_1329 0442b32bec233b7a51226174e458d2ab 640 SUPERFAMILY SSF48435 29 473 2.88E-108 T 10-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 VF_1329 0442b32bec233b7a51226174e458d2ab 640 Gene3D G3DSA:1.10.530.10 470 636 3.8E-44 T 10-10-2018 VF_1329 0442b32bec233b7a51226174e458d2ab 640 Gene3D G3DSA:1.25.20.10 25 385 4.9E-84 T 10-10-2018 VF_1329 0442b32bec233b7a51226174e458d2ab 640 Pfam PF14718 Soluble lytic murein transglycosylase L domain 402 468 4.2E-20 T 10-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 VF_1329 0442b32bec233b7a51226174e458d2ab 640 SUPERFAMILY SSF53955 475 632 9.76E-42 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_1329 0442b32bec233b7a51226174e458d2ab 640 Gene3D G3DSA:1.10.1240.20 402 468 1.3E-15 T 10-10-2018 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily GO:0004553|GO:0042597 VF_1329 0442b32bec233b7a51226174e458d2ab 640 Pfam PF01464 Transglycosylase SLT domain 482 590 3.4E-23 T 10-10-2018 IPR008258 Transglycosylase SLT domain 1 VF_A0322 7a14504fdbf0396d1e9a94c2b14a15d7 212 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 4 205 26.974 T 10-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_A0322 7a14504fdbf0396d1e9a94c2b14a15d7 212 SUPERFAMILY SSF51391 4 205 4.84E-65 T 10-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_A0322 7a14504fdbf0396d1e9a94c2b14a15d7 212 Pfam PF02581 Thiamine monophosphate synthase 7 187 2.4E-63 T 10-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_A0322 7a14504fdbf0396d1e9a94c2b14a15d7 212 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 7 199 5.1E-64 T 10-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_A0322 7a14504fdbf0396d1e9a94c2b14a15d7 212 Gene3D G3DSA:3.20.20.70 2 206 5.9E-70 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1435 7e1d98d5317bd054d18dd48c7a855ee3 114 Pfam PF13698 Domain of unknown function (DUF4156) 24 108 9.2E-22 T 10-10-2018 IPR025294 Protein of unknown function DUF4156 VF_1465 a74ed06fda4e6869e26d0caf53333185 467 Gene3D G3DSA:3.40.50.300 9 135 3.9E-25 T 10-10-2018 VF_1465 a74ed06fda4e6869e26d0caf53333185 467 SUPERFAMILY SSF57783 348 386 3.74E-5 T 10-10-2018 VF_1465 a74ed06fda4e6869e26d0caf53333185 467 Pfam PF13361 UvrD-like helicase C-terminal domain 241 313 2.3E-12 T 10-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 VF_1465 a74ed06fda4e6869e26d0caf53333185 467 SUPERFAMILY SSF57783 415 443 2.89E-6 T 10-10-2018 VF_1465 a74ed06fda4e6869e26d0caf53333185 467 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 417 440 3.0E-5 T 10-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VF_1465 a74ed06fda4e6869e26d0caf53333185 467 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 351 384 4.5E-8 T 10-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VF_1465 a74ed06fda4e6869e26d0caf53333185 467 Pfam PF00580 UvrD/REP helicase N-terminal domain 24 129 4.5E-20 T 10-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 VF_1465 a74ed06fda4e6869e26d0caf53333185 467 Gene3D G3DSA:3.40.50.300 140 340 1.1E-20 T 10-10-2018 VF_1465 a74ed06fda4e6869e26d0caf53333185 467 SUPERFAMILY SSF52540 25 330 3.13E-50 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2241 473c53675d5d175d4296c10d474f057d 203 Pfam PF08239 Bacterial SH3 domain 32 83 1.1E-8 T 10-10-2018 IPR003646 SH3-like domain, bacterial-type VF_2241 473c53675d5d175d4296c10d474f057d 203 Gene3D G3DSA:2.30.30.40 30 83 2.7E-8 T 10-10-2018 VF_2241 473c53675d5d175d4296c10d474f057d 203 PIRSF PIRSF006158 2 203 7.3E-67 T 10-10-2018 IPR016476 SH3 domain protein VF_2241 473c53675d5d175d4296c10d474f057d 203 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 24 202 4.0E-50 T 10-10-2018 IPR016476 SH3 domain protein VF_2241 473c53675d5d175d4296c10d474f057d 203 SMART SM00287 20 86 5.8E-10 T 10-10-2018 IPR003646 SH3-like domain, bacterial-type VF_1792 85c17a58ee72f7fc896674680c3c440e 156 Pfam PF04073 Aminoacyl-tRNA editing domain 32 144 1.7E-24 T 10-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 VF_1792 85c17a58ee72f7fc896674680c3c440e 156 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 153 2.1E-59 T 10-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC VF_1792 85c17a58ee72f7fc896674680c3c440e 156 SUPERFAMILY SSF55826 2 153 2.62E-42 T 10-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VF_1792 85c17a58ee72f7fc896674680c3c440e 156 PIRSF PIRSF006181 1 156 2.1E-56 T 10-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC VF_1792 85c17a58ee72f7fc896674680c3c440e 156 Gene3D G3DSA:3.90.960.10 1 156 1.6E-56 T 10-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VF_0504 2dace609960bf91df6b3a21cd7997195 258 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 1 258 51.749 T 10-10-2018 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 VF_0504 2dace609960bf91df6b3a21cd7997195 258 Pfam PF01791 DeoC/LacD family aldolase 11 239 1.4E-46 T 10-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 VF_0504 2dace609960bf91df6b3a21cd7997195 258 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 11 230 8.6E-80 T 10-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 VF_0504 2dace609960bf91df6b3a21cd7997195 258 Gene3D G3DSA:3.20.20.70 1 257 5.2E-100 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0504 2dace609960bf91df6b3a21cd7997195 258 SMART SM01133 10 244 1.3E-75 T 10-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 VF_0504 2dace609960bf91df6b3a21cd7997195 258 PIRSF PIRSF001357 5 252 3.0E-75 T 10-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 VF_0504 2dace609960bf91df6b3a21cd7997195 258 SUPERFAMILY SSF51569 6 245 1.99E-80 T 10-10-2018 VF_A0157 f882189f61dcb9da15457f0c9fa0cbf0 401 Gene3D G3DSA:1.20.1250.20 8 397 1.2E-31 T 10-10-2018 VF_A0157 f882189f61dcb9da15457f0c9fa0cbf0 401 SUPERFAMILY SSF103473 14 396 1.19E-33 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0157 f882189f61dcb9da15457f0c9fa0cbf0 401 Pfam PF07690 Major Facilitator Superfamily 19 363 2.3E-25 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_1427 a18cc9978f64ceb05f2256a9f5684f30 515 Gene3D G3DSA:3.30.1120.10 398 461 1.5E-99 T 10-10-2018 VF_1427 a18cc9978f64ceb05f2256a9f5684f30 515 Pfam PF14707 C-terminal region of aryl-sulfatase 397 470 5.6E-7 T 10-10-2018 VF_1427 a18cc9978f64ceb05f2256a9f5684f30 515 Gene3D G3DSA:3.40.720.10 31 397 1.5E-99 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VF_1427 a18cc9978f64ceb05f2256a9f5684f30 515 SUPERFAMILY SSF53649 27 508 2.47E-125 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_1427 a18cc9978f64ceb05f2256a9f5684f30 515 Pfam PF00884 Sulfatase 31 356 2.4E-61 T 10-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VF_0745 05841b3865680a1467532f871ed7a54d 391 SMART SM00936 281 371 1.6E-38 T 10-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_0745 05841b3865680a1467532f871ed7a54d 391 SUPERFAMILY SSF56601 9 281 6.77E-87 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VF_0745 05841b3865680a1467532f871ed7a54d 391 Gene3D G3DSA:2.60.410.10 281 371 2.1E-30 T 10-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_0745 05841b3865680a1467532f871ed7a54d 391 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 31 261 2.6E-93 T 10-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 VF_0745 05841b3865680a1467532f871ed7a54d 391 SUPERFAMILY SSF69189 281 373 1.96E-28 T 10-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_0745 05841b3865680a1467532f871ed7a54d 391 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 281 371 9.8E-28 T 10-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_0745 05841b3865680a1467532f871ed7a54d 391 Gene3D G3DSA:3.40.710.10 24 280 4.7E-90 T 10-10-2018 VF_0745 05841b3865680a1467532f871ed7a54d 391 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 120 137 1.0E-16 T 10-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VF_0745 05841b3865680a1467532f871ed7a54d 391 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 147 160 1.0E-16 T 10-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VF_0745 05841b3865680a1467532f871ed7a54d 391 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 64 75 1.0E-16 T 10-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VF_1701 78685b21dad3d81034198d1b22ab3de5 680 Gene3D G3DSA:3.50.50.60 273 672 9.0E-134 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_1701 78685b21dad3d81034198d1b22ab3de5 680 Gene3D G3DSA:3.40.50.150 15 261 3.7E-108 T 10-10-2018 VF_1701 78685b21dad3d81034198d1b22ab3de5 680 Gene3D G3DSA:3.30.9.10 357 580 9.0E-134 T 10-10-2018 VF_1701 78685b21dad3d81034198d1b22ab3de5 680 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 273 675 3.1E-159 T 10-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 VF_1701 78685b21dad3d81034198d1b22ab3de5 680 SUPERFAMILY SSF51905 272 538 3.37E-24 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_1701 78685b21dad3d81034198d1b22ab3de5 680 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 124 250 3.0E-46 T 10-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 VF_1701 78685b21dad3d81034198d1b22ab3de5 680 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 13 670 27.981 T 10-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 VF_1701 78685b21dad3d81034198d1b22ab3de5 680 Pfam PF01266 FAD dependent oxidoreductase 273 645 3.4E-40 T 10-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VF_1326 186fdc4d979ee388a61bcc3828ef1603 199 SUPERFAMILY SSF51161 52 184 1.39E-45 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_1326 186fdc4d979ee388a61bcc3828ef1603 199 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 135 163 - T 10-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VF_1326 186fdc4d979ee388a61bcc3828ef1603 199 Gene3D G3DSA:2.160.10.10 4 179 3.9E-54 T 10-10-2018 VF_1326 186fdc4d979ee388a61bcc3828ef1603 199 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 127 161 3.0E-12 T 10-10-2018 IPR001451 Hexapeptide repeat VF_A0247 7bbd44ea85220c98e075d1f1212e9d16 387 SUPERFAMILY SSF46894 7 98 7.37E-18 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_A0247 7bbd44ea85220c98e075d1f1212e9d16 387 Pfam PF00486 Transcriptional regulatory protein, C terminal 26 98 2.2E-17 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0247 7bbd44ea85220c98e075d1f1212e9d16 387 Gene3D G3DSA:1.10.10.10 4 115 4.7E-22 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0247 7bbd44ea85220c98e075d1f1212e9d16 387 SMART SM00862 25 99 4.0E-14 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0744 66d5a7d9b8025f349dfe17012b2d233e 295 Pfam PF03466 LysR substrate binding domain 96 291 2.5E-22 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0744 66d5a7d9b8025f349dfe17012b2d233e 295 SUPERFAMILY SSF46785 10 92 1.36E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0744 66d5a7d9b8025f349dfe17012b2d233e 295 SUPERFAMILY SSF53850 97 294 1.32E-26 T 10-10-2018 VF_A0744 66d5a7d9b8025f349dfe17012b2d233e 295 Gene3D G3DSA:3.40.190.290 98 290 8.6E-34 T 10-10-2018 VF_A0744 66d5a7d9b8025f349dfe17012b2d233e 295 Gene3D G3DSA:1.10.10.10 10 95 4.9E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0744 66d5a7d9b8025f349dfe17012b2d233e 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 70 4.0E-16 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1936 8c027750f778e927b0502b7e04274a8c 157 Hamap MF_00042 Ribonuclease H [rnhA]. 6 154 35.459 T 10-10-2018 IPR022892 Ribonuclease HI GO:0004523 VF_1936 8c027750f778e927b0502b7e04274a8c 157 Pfam PF00075 RNase H 7 145 2.0E-52 T 10-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 VF_1936 8c027750f778e927b0502b7e04274a8c 157 SUPERFAMILY SSF53098 6 147 1.09E-56 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_1936 8c027750f778e927b0502b7e04274a8c 157 Gene3D G3DSA:3.30.420.10 5 156 2.4E-59 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 9.9E-14 T 10-10-2018 VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 9.9E-14 T 10-10-2018 VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 9.9E-14 T 10-10-2018 VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 5.5E-5 T 10-10-2018 VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 5.5E-5 T 10-10-2018 VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 Pfam PF00117 Glutamine amidotransferase class-I 4 190 4.6E-58 T 10-10-2018 IPR017926 Glutamine amidotransferase VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 Gene3D G3DSA:3.40.50.880 1 192 7.8E-63 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 SUPERFAMILY SSF52317 2 191 1.25E-55 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 191 8.3E-87 T 10-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 PRINTS PR00097 Anthranilate synthase component II signature 169 182 2.8E-37 T 10-10-2018 VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 PRINTS PR00097 Anthranilate synthase component II signature 119 131 2.8E-37 T 10-10-2018 VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 PRINTS PR00097 Anthranilate synthase component II signature 2 16 2.8E-37 T 10-10-2018 VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 PRINTS PR00097 Anthranilate synthase component II signature 74 85 2.8E-37 T 10-10-2018 VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 PRINTS PR00097 Anthranilate synthase component II signature 99 107 2.8E-37 T 10-10-2018 VF_2285 d614caa420dfa7dc32fe67a59dce7f30 192 PRINTS PR00097 Anthranilate synthase component II signature 47 56 2.8E-37 T 10-10-2018 VF_0250 17c0a8d514eb52c80f7c769178922aff 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 10-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0250 17c0a8d514eb52c80f7c769178922aff 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 7.0E-25 T 10-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0250 17c0a8d514eb52c80f7c769178922aff 101 SUPERFAMILY SSF57716 3 101 9.98E-37 T 10-10-2018 VF_0250 17c0a8d514eb52c80f7c769178922aff 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.469 T 10-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid VF_0250 17c0a8d514eb52c80f7c769178922aff 101 Gene3D G3DSA:4.10.830.10 41 101 7.4E-23 T 10-10-2018 VF_1302 9a42c7247acb9844e1676b09d3517e64 323 Gene3D G3DSA:1.10.760.10 145 320 2.5E-72 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_1302 9a42c7247acb9844e1676b09d3517e64 323 SUPERFAMILY SSF46626 55 240 2.47E-29 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_1302 9a42c7247acb9844e1676b09d3517e64 323 PIRSF PIRSF000006 1 323 1.8E-105 T 10-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III VF_1302 9a42c7247acb9844e1676b09d3517e64 323 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 114 323 3.6E-56 T 10-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III VF_1302 9a42c7247acb9844e1676b09d3517e64 323 SUPERFAMILY SSF46626 240 322 1.29E-21 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_1302 9a42c7247acb9844e1676b09d3517e64 323 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 37 83 8.0E-25 T 10-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal VF_1302 9a42c7247acb9844e1676b09d3517e64 323 Gene3D G3DSA:1.20.58.1490 1 94 3.7E-35 T 10-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily VF_1302 9a42c7247acb9844e1676b09d3517e64 323 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 242 317 1.3E-12 T 10-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_1302 9a42c7247acb9844e1676b09d3517e64 323 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 156 229 7.9E-13 T 10-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_1302 9a42c7247acb9844e1676b09d3517e64 323 PRINTS PR00605 Class IC cytochrome C signature 295 317 2.3E-5 T 10-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 VF_1302 9a42c7247acb9844e1676b09d3517e64 323 PRINTS PR00605 Class IC cytochrome C signature 166 177 2.3E-5 T 10-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 VF_1302 9a42c7247acb9844e1676b09d3517e64 323 Gene3D G3DSA:1.10.760.10 211 297 2.5E-72 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_0870 b7efe5d4e64d17bfea65a5c469503cc3 190 Gene3D G3DSA:3.40.630.30 28 179 1.4E-15 T 10-10-2018 VF_0870 b7efe5d4e64d17bfea65a5c469503cc3 190 SUPERFAMILY SSF55729 29 134 3.14E-12 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_0870 b7efe5d4e64d17bfea65a5c469503cc3 190 Pfam PF00583 Acetyltransferase (GNAT) family 42 121 2.2E-8 T 10-10-2018 IPR000182 GNAT domain VF_A0989 bfbd86743d5f23b255485d102525870a 284 Gene3D G3DSA:3.20.20.70 2 284 1.8E-105 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A0989 bfbd86743d5f23b255485d102525870a 284 TIGRFAM TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family 3 283 5.6E-158 T 10-10-2018 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY GO:0005975|GO:0008270|GO:0009025 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 VF_A0989 bfbd86743d5f23b255485d102525870a 284 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 283 4.3E-98 T 10-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VF_A0989 bfbd86743d5f23b255485d102525870a 284 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 10-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VF_A0989 bfbd86743d5f23b255485d102525870a 284 PIRSF PIRSF001359 1 284 7.8E-111 T 10-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VF_A0989 bfbd86743d5f23b255485d102525870a 284 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 84 - T 10-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VF_A0989 bfbd86743d5f23b255485d102525870a 284 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 283 1.2E-101 T 10-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VF_A0989 bfbd86743d5f23b255485d102525870a 284 SUPERFAMILY SSF51569 3 283 9.08E-100 T 10-10-2018 VF_0820 15a7e228e165b6d843890350b8092901 115 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 11 104 3.4E-6 T 10-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0820 15a7e228e165b6d843890350b8092901 115 Gene3D G3DSA:1.20.1300.10 1 115 3.4E-28 T 10-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0820 15a7e228e165b6d843890350b8092901 115 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 113 1.3E-34 T 10-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 VF_0820 15a7e228e165b6d843890350b8092901 115 PIRSF PIRSF000169 1 115 1.2E-37 T 10-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 VF_0820 15a7e228e165b6d843890350b8092901 115 SUPERFAMILY SSF81343 4 115 8.28E-27 T 10-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_A0081 afd0bc6dd04d29b9186fe9f56eca61f6 204 TIGRFAM TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B 3 162 3.2E-81 T 10-10-2018 IPR014297 Dimethylsulphoxide reductase, chain B VF_A0081 afd0bc6dd04d29b9186fe9f56eca61f6 204 SUPERFAMILY SSF54862 1 198 5.02E-69 T 10-10-2018 VF_A0081 afd0bc6dd04d29b9186fe9f56eca61f6 204 Gene3D G3DSA:3.30.70.20 1 204 5.1E-55 T 10-10-2018 VF_A0081 afd0bc6dd04d29b9186fe9f56eca61f6 204 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 98 109 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_A0081 afd0bc6dd04d29b9186fe9f56eca61f6 204 Pfam PF13247 4Fe-4S dicluster domain 59 152 7.2E-29 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_A0081 afd0bc6dd04d29b9186fe9f56eca61f6 204 Pfam PF12800 4Fe-4S binding domain 11 25 0.039 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_0702 9760870a141a1da1e673978a93d85205 369 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 38.279 T 10-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_0702 9760870a141a1da1e673978a93d85205 369 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 7 199 3.3E-75 T 10-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_0702 9760870a141a1da1e673978a93d85205 369 SUPERFAMILY SSF142695 205 367 7.06E-48 T 10-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VF_0702 9760870a141a1da1e673978a93d85205 369 Gene3D G3DSA:3.40.50.10990 206 369 1.1E-31 T 10-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VF_0702 9760870a141a1da1e673978a93d85205 369 Pfam PF00925 GTP cyclohydrolase II 207 367 2.1E-39 T 10-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VF_0702 9760870a141a1da1e673978a93d85205 369 Gene3D G3DSA:3.90.870.10 1 205 1.8E-87 T 10-10-2018 VF_0702 9760870a141a1da1e673978a93d85205 369 SUPERFAMILY SSF55821 3 202 7.1E-86 T 10-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VF_0702 9760870a141a1da1e673978a93d85205 369 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 8 198 9.7E-84 T 10-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_0702 9760870a141a1da1e673978a93d85205 369 PIRSF PIRSF001259 1 369 5.7E-130 T 10-10-2018 VF_1671 95497c45137f79565a4033c4686e6bd5 577 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 8 571 33.061 T 10-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 VF_1671 95497c45137f79565a4033c4686e6bd5 577 Gene3D G3DSA:3.40.50.970 6 200 2.3E-58 T 10-10-2018 VF_1671 95497c45137f79565a4033c4686e6bd5 577 SUPERFAMILY SSF52518 4 181 1.55E-33 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_1671 95497c45137f79565a4033c4686e6bd5 577 SUPERFAMILY SSF52467 227 351 1.39E-8 T 10-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VF_1671 95497c45137f79565a4033c4686e6bd5 577 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 14 175 3.7E-30 T 10-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 VF_1671 95497c45137f79565a4033c4686e6bd5 577 Gene3D G3DSA:3.40.50.970 371 574 8.9E-50 T 10-10-2018 VF_1671 95497c45137f79565a4033c4686e6bd5 577 SUPERFAMILY SSF52518 403 558 2.2E-25 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_1671 95497c45137f79565a4033c4686e6bd5 577 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 14 449 3.2E-142 T 10-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 VF_1671 95497c45137f79565a4033c4686e6bd5 577 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 426 529 2.9E-8 T 10-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 VF_1671 95497c45137f79565a4033c4686e6bd5 577 Pfam PF16582 Middle domain of thiamine pyrophosphate 191 398 7.0E-45 T 10-10-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 VF_1671 95497c45137f79565a4033c4686e6bd5 577 PIRSF PIRSF004983 5 576 1.3E-171 T 10-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 VF_1671 95497c45137f79565a4033c4686e6bd5 577 Gene3D G3DSA:3.40.50.1220 220 344 2.5E-40 T 10-10-2018 VF_A0496 c75a974016b6aee51bbb38541cccc80f 404 Gene3D G3DSA:3.30.420.40 91 386 3.4E-95 T 10-10-2018 VF_A0496 c75a974016b6aee51bbb38541cccc80f 404 ProSitePatterns PS01125 ROK family signature. 218 245 - T 10-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VF_A0496 c75a974016b6aee51bbb38541cccc80f 404 SUPERFAMILY SSF53067 86 390 9.48E-51 T 10-10-2018 VF_A0496 c75a974016b6aee51bbb38541cccc80f 404 SUPERFAMILY SSF46785 11 76 9.09E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0496 c75a974016b6aee51bbb38541cccc80f 404 Pfam PF00480 ROK family 88 388 2.5E-66 T 10-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VF_A0496 c75a974016b6aee51bbb38541cccc80f 404 Gene3D G3DSA:1.10.10.10 2 81 1.2E-22 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0496 c75a974016b6aee51bbb38541cccc80f 404 Gene3D G3DSA:3.30.420.40 208 376 3.4E-95 T 10-10-2018 VF_1413 f2b6d1d7b6224a333c525629b4dcf2ad 288 SUPERFAMILY SSF56112 9 281 1.41E-35 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily VF_1413 f2b6d1d7b6224a333c525629b4dcf2ad 288 Gene3D G3DSA:3.90.1200.10 96 287 2.4E-57 T 10-10-2018 VF_1413 f2b6d1d7b6224a333c525629b4dcf2ad 288 PIRSF PIRSF006221 1 287 1.7E-95 T 10-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 VF_1413 f2b6d1d7b6224a333c525629b4dcf2ad 288 Pfam PF03881 Fructosamine kinase 1 284 3.7E-118 T 10-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 VF_1413 f2b6d1d7b6224a333c525629b4dcf2ad 288 Gene3D G3DSA:3.30.200.20 1 93 1.0E-21 T 10-10-2018 VF_1733 3c13f90c96594e51aa1395fde06eb5bf 256 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 10-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 VF_1733 3c13f90c96594e51aa1395fde06eb5bf 256 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 125 135 - T 10-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 VF_1733 3c13f90c96594e51aa1395fde06eb5bf 256 SUPERFAMILY SSF51556 2 253 1.1E-87 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_1733 3c13f90c96594e51aa1395fde06eb5bf 256 Pfam PF01026 TatD related DNase 3 253 4.7E-79 T 10-10-2018 IPR001130 TatD family GO:0016788 VF_1733 3c13f90c96594e51aa1395fde06eb5bf 256 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 190 206 - T 10-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 VF_1733 3c13f90c96594e51aa1395fde06eb5bf 256 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 253 1.0E-92 T 10-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 VF_1733 3c13f90c96594e51aa1395fde06eb5bf 256 Gene3D G3DSA:3.20.20.140 1 256 1.4E-100 T 10-10-2018 VF_1733 3c13f90c96594e51aa1395fde06eb5bf 256 PIRSF PIRSF005902 1 256 9.3E-82 T 10-10-2018 IPR001130 TatD family GO:0016788 VF_A0189 260b7eab8a6fdcebf00bfdabb370e40b 363 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 5 172 2.5E-66 T 10-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal VF_A0189 260b7eab8a6fdcebf00bfdabb370e40b 363 SUPERFAMILY SSF48695 10 173 2.98E-47 T 10-10-2018 IPR036280 Multiheme cytochrome superfamily VF_A0189 260b7eab8a6fdcebf00bfdabb370e40b 363 PIRSF PIRSF000014 1 363 3.0E-143 T 10-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 VF_A0189 260b7eab8a6fdcebf00bfdabb370e40b 363 Gene3D G3DSA:1.10.3820.10 1 179 9.6E-35 T 10-10-2018 IPR038266 NapC/NirT cytochrome c superfamily VF_0902 907f5893dab348a924343b8d4b87a871 321 SUPERFAMILY SSF51905 2 313 6.2E-50 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0902 907f5893dab348a924343b8d4b87a871 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 3.9E-38 T 10-10-2018 VF_0902 907f5893dab348a924343b8d4b87a871 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 3.9E-38 T 10-10-2018 VF_0902 907f5893dab348a924343b8d4b87a871 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 3.9E-38 T 10-10-2018 VF_0902 907f5893dab348a924343b8d4b87a871 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 3.9E-38 T 10-10-2018 VF_0902 907f5893dab348a924343b8d4b87a871 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 3.9E-38 T 10-10-2018 VF_0902 907f5893dab348a924343b8d4b87a871 321 Gene3D G3DSA:3.50.50.60 118 244 2.0E-125 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0902 907f5893dab348a924343b8d4b87a871 321 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 10-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 VF_0902 907f5893dab348a924343b8d4b87a871 321 Gene3D G3DSA:3.50.50.60 9 311 2.0E-125 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0902 907f5893dab348a924343b8d4b87a871 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 1.1E-74 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VF_0902 907f5893dab348a924343b8d4b87a871 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 1.1E-74 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VF_0902 907f5893dab348a924343b8d4b87a871 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 1.1E-74 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VF_0902 907f5893dab348a924343b8d4b87a871 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 1.1E-74 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VF_0902 907f5893dab348a924343b8d4b87a871 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 1.1E-74 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VF_0902 907f5893dab348a924343b8d4b87a871 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 1.1E-74 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VF_0902 907f5893dab348a924343b8d4b87a871 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 1.1E-74 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VF_0902 907f5893dab348a924343b8d4b87a871 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 1.1E-74 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VF_0902 907f5893dab348a924343b8d4b87a871 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 1.1E-74 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VF_0902 907f5893dab348a924343b8d4b87a871 321 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 300 7.4E-47 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VF_0902 907f5893dab348a924343b8d4b87a871 321 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 313 1.7E-121 T 10-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 VF_0196 357d103d83e001ea7d94b10b3e189e93 182 Pfam PF02397 Bacterial sugar transferase 3 172 2.9E-47 T 10-10-2018 IPR003362 Bacterial sugar transferase VF_1589 6e1091d5ac7ef96ec8a53f9ecd67ff6c 502 Pfam PF11840 Protein of unknown function (DUF3360) 5 501 2.4E-263 T 10-10-2018 IPR021794 Protein of unknown function DUF3360 VF_0573 86205249a5684280b503dd643b04da48 383 PIRSF PIRSF004810 1 383 2.9E-114 T 10-10-2018 IPR014047 Chromate transporter, long chain VF_0573 86205249a5684280b503dd643b04da48 383 TIGRFAM TIGR00937 2A51: chromate efflux transporter 8 375 2.9E-93 T 10-10-2018 IPR014047 Chromate transporter, long chain VF_0573 86205249a5684280b503dd643b04da48 383 Pfam PF02417 Chromate transporter 3 168 9.1E-36 T 10-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 VF_0573 86205249a5684280b503dd643b04da48 383 Pfam PF02417 Chromate transporter 214 378 5.3E-32 T 10-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 VF_0157 3c09fac186c4c366cac9b1ec291d48ef 750 Pfam PF06082 Exopolysaccharide biosynthesis protein YbjH 57 739 4.3E-273 T 10-10-2018 IPR010344 Exopolysaccharide biosynthesis protein YbjH VF_A0760 12463f17a3c0d1886be50fc930f0552e 418 PIRSF PIRSF003085 14 417 1.1E-119 T 10-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 VF_A0760 12463f17a3c0d1886be50fc930f0552e 418 SUPERFAMILY SSF53335 26 366 1.4E-92 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_A0760 12463f17a3c0d1886be50fc930f0552e 418 Pfam PF02353 Mycolic acid cyclopropane synthetase 140 406 4.4E-85 T 10-10-2018 VF_A0760 12463f17a3c0d1886be50fc930f0552e 418 Gene3D G3DSA:3.40.50.150 144 416 2.0E-100 T 10-10-2018 VF_A0230 4ef3130cf6983e6f93980ecc4be8524c 253 PRINTS PR01021 OMPA domain signature 182 197 7.9E-15 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A0230 4ef3130cf6983e6f93980ecc4be8524c 253 PRINTS PR01021 OMPA domain signature 197 213 7.9E-15 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A0230 4ef3130cf6983e6f93980ecc4be8524c 253 PRINTS PR01021 OMPA domain signature 153 175 7.9E-15 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A0230 4ef3130cf6983e6f93980ecc4be8524c 253 Pfam PF00691 OmpA family 152 246 3.2E-22 T 10-10-2018 IPR006665 OmpA-like domain VF_A0230 4ef3130cf6983e6f93980ecc4be8524c 253 Gene3D G3DSA:3.30.1330.60 123 253 7.9E-34 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A0230 4ef3130cf6983e6f93980ecc4be8524c 253 SUPERFAMILY SSF103088 144 250 1.96E-31 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A0747 f35585d1691a93ed01d303bf4e7fee26 383 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 235 244 - T 10-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 VF_A0747 f35585d1691a93ed01d303bf4e7fee26 383 Pfam PF00155 Aminotransferase class I and II 43 379 9.8E-51 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VF_A0747 f35585d1691a93ed01d303bf4e7fee26 383 SUPERFAMILY SSF53383 6 382 1.71E-102 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_A0747 f35585d1691a93ed01d303bf4e7fee26 383 Gene3D G3DSA:3.40.640.10 59 286 5.6E-122 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_A0747 f35585d1691a93ed01d303bf4e7fee26 383 Gene3D G3DSA:3.90.1150.10 43 376 5.6E-122 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_A0747 f35585d1691a93ed01d303bf4e7fee26 383 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 22 379 2.1E-137 T 10-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 VF_A0747 f35585d1691a93ed01d303bf4e7fee26 383 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 5 383 47.382 T 10-10-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 VF_2268 026fbaad754ef9c45f8a97318fe7e092 106 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 10 101 3.0E-49 T 10-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 VF_2268 026fbaad754ef9c45f8a97318fe7e092 106 Pfam PF01340 Met Apo-repressor, MetJ 3 99 3.8E-56 T 10-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 VF_2268 026fbaad754ef9c45f8a97318fe7e092 106 SUPERFAMILY SSF47598 3 104 6.23E-55 T 10-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 VF_2268 026fbaad754ef9c45f8a97318fe7e092 106 Gene3D G3DSA:1.10.140.10 2 105 2.3E-54 T 10-10-2018 IPR023453 Methionine repressor MetJ domain superfamily VF_2185 d99c5e51c90df9797bdfa43bfaf32459 134 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2185 d99c5e51c90df9797bdfa43bfaf32459 134 SUPERFAMILY SSF54523 10 129 2.77E-21 T 10-10-2018 VF_2185 d99c5e51c90df9797bdfa43bfaf32459 134 Gene3D G3DSA:3.30.700.10 10 130 4.0E-26 T 10-10-2018 VF_2185 d99c5e51c90df9797bdfa43bfaf32459 134 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 30 2.8E-10 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2185 d99c5e51c90df9797bdfa43bfaf32459 134 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 29 8.0E-10 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2185 d99c5e51c90df9797bdfa43bfaf32459 134 Pfam PF00114 Pilin (bacterial filament) 41 127 3.0E-12 T 10-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 VF_1510 8c7025ab5dc1b3e2257e303630c282d0 299 Gene3D G3DSA:1.10.10.10 2 86 4.0E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1510 8c7025ab5dc1b3e2257e303630c282d0 299 Pfam PF03466 LysR substrate binding domain 92 295 5.9E-22 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1510 8c7025ab5dc1b3e2257e303630c282d0 299 Gene3D G3DSA:3.40.190.290 93 296 1.3E-14 T 10-10-2018 VF_1510 8c7025ab5dc1b3e2257e303630c282d0 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.7E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1510 8c7025ab5dc1b3e2257e303630c282d0 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 3.4E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1510 8c7025ab5dc1b3e2257e303630c282d0 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 3.4E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1510 8c7025ab5dc1b3e2257e303630c282d0 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 3.4E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1510 8c7025ab5dc1b3e2257e303630c282d0 299 SUPERFAMILY SSF46785 2 112 5.99E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1510 8c7025ab5dc1b3e2257e303630c282d0 299 SUPERFAMILY SSF53850 92 297 2.9E-25 T 10-10-2018 VF_1389 d410e794ca2639f84997c0df75e37fb6 147 Gene3D G3DSA:3.40.630.30 1 145 1.3E-28 T 10-10-2018 VF_1389 d410e794ca2639f84997c0df75e37fb6 147 SUPERFAMILY SSF55729 1 141 4.97E-27 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_1389 d410e794ca2639f84997c0df75e37fb6 147 Pfam PF00583 Acetyltransferase (GNAT) family 16 123 9.8E-14 T 10-10-2018 IPR000182 GNAT domain VF_1891 11128f429ce0a74e7b5e27431f74afa2 358 SMART SM00771 222 352 1.5E-73 T 10-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 VF_1891 11128f429ce0a74e7b5e27431f74afa2 358 Hamap MF_00509 Cell division protein ZipA [zipA]. 27 354 23.109 T 10-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 VF_1891 11128f429ce0a74e7b5e27431f74afa2 358 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 225 351 6.0E-45 T 10-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 VF_1891 11128f429ce0a74e7b5e27431f74afa2 358 Gene3D G3DSA:3.30.1400.10 220 357 1.2E-47 T 10-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 VF_1891 11128f429ce0a74e7b5e27431f74afa2 358 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 28 352 2.9E-78 T 10-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 VF_1891 11128f429ce0a74e7b5e27431f74afa2 358 SUPERFAMILY SSF64383 223 357 1.24E-45 T 10-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 VF_1891 11128f429ce0a74e7b5e27431f74afa2 358 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 225 353 1.0E-72 T 10-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 VF_1689 5e448c254294567d0c26bd991ac5de5f 368 SUPERFAMILY SSF52172 25 146 1.57E-33 T 10-10-2018 IPR011006 CheY-like superfamily VF_1689 5e448c254294567d0c26bd991ac5de5f 368 Gene3D G3DSA:3.40.50.2300 22 155 1.4E-32 T 10-10-2018 VF_1689 5e448c254294567d0c26bd991ac5de5f 368 Gene3D G3DSA:3.60.40.10 168 347 3.1E-7 T 10-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VF_1689 5e448c254294567d0c26bd991ac5de5f 368 Pfam PF00072 Response regulator receiver domain 27 130 7.4E-26 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1689 5e448c254294567d0c26bd991ac5de5f 368 SMART SM00448 25 137 9.1E-29 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1155 b4f81a95a01ba51d7a5c0112af982f13 427 SUPERFAMILY SSF118215 5 407 9.15E-105 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VF_1155 b4f81a95a01ba51d7a5c0112af982f13 427 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 2.8E-37 T 10-10-2018 VF_1155 b4f81a95a01ba51d7a5c0112af982f13 427 PRINTS PR00173 Glutamate-aspartate symporter signature 196 215 2.8E-37 T 10-10-2018 VF_1155 b4f81a95a01ba51d7a5c0112af982f13 427 PRINTS PR00173 Glutamate-aspartate symporter signature 298 324 2.8E-37 T 10-10-2018 VF_1155 b4f81a95a01ba51d7a5c0112af982f13 427 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 2.8E-37 T 10-10-2018 VF_1155 b4f81a95a01ba51d7a5c0112af982f13 427 PRINTS PR00173 Glutamate-aspartate symporter signature 3 23 2.8E-37 T 10-10-2018 VF_1155 b4f81a95a01ba51d7a5c0112af982f13 427 PRINTS PR00173 Glutamate-aspartate symporter signature 333 352 2.8E-37 T 10-10-2018 VF_1155 b4f81a95a01ba51d7a5c0112af982f13 427 PRINTS PR00173 Glutamate-aspartate symporter signature 360 380 2.8E-37 T 10-10-2018 VF_1155 b4f81a95a01ba51d7a5c0112af982f13 427 PRINTS PR00173 Glutamate-aspartate symporter signature 149 171 2.8E-37 T 10-10-2018 VF_1155 b4f81a95a01ba51d7a5c0112af982f13 427 Pfam PF00375 Sodium:dicarboxylate symporter family 6 405 2.2E-115 T 10-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VF_1155 b4f81a95a01ba51d7a5c0112af982f13 427 Gene3D G3DSA:1.10.3860.10 1 421 1.2E-114 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VF_1571 687b18ab4d9698bbf903949c08dc5bd6 215 Hamap MF_01150 Chaperone protein TorD [torD]. 3 212 33.777 T 10-10-2018 IPR023069 Chaperone TorD VF_1571 687b18ab4d9698bbf903949c08dc5bd6 215 SUPERFAMILY SSF89155 7 212 5.62E-50 T 10-10-2018 IPR036411 TorD-like superfamily VF_1571 687b18ab4d9698bbf903949c08dc5bd6 215 Gene3D G3DSA:1.20.120.1820 3 125 6.8E-40 T 10-10-2018 VF_1571 687b18ab4d9698bbf903949c08dc5bd6 215 Gene3D G3DSA:1.20.1280.20 129 214 3.6E-20 T 10-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VF_1571 687b18ab4d9698bbf903949c08dc5bd6 215 Pfam PF02613 Nitrate reductase delta subunit 50 182 1.1E-37 T 10-10-2018 IPR020945 DMSO/Nitrate reductase chaperone VF_A0914 963646e802f2a379d156aecc29728409 414 Pfam PF01595 Domain of unknown function DUF21 1 179 6.9E-41 T 10-10-2018 IPR002550 CNNM, transmembrane domain VF_A0914 963646e802f2a379d156aecc29728409 414 SUPERFAMILY SSF56176 330 408 3.0E-16 T 10-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VF_A0914 963646e802f2a379d156aecc29728409 414 Gene3D G3DSA:3.10.580.10 175 329 7.9E-34 T 10-10-2018 VF_A0914 963646e802f2a379d156aecc29728409 414 SMART SM01091 328 410 1.7E-17 T 10-10-2018 IPR005170 Transporter-associated domain VF_A0914 963646e802f2a379d156aecc29728409 414 Pfam PF03471 Transporter associated domain 329 409 6.8E-19 T 10-10-2018 IPR005170 Transporter-associated domain VF_A0914 963646e802f2a379d156aecc29728409 414 Gene3D G3DSA:3.30.465.10 330 410 4.6E-21 T 10-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VF_A0914 963646e802f2a379d156aecc29728409 414 SUPERFAMILY SSF54631 182 317 1.26E-21 T 10-10-2018 VF_A1067 fad29ec42957fc60209cf4a53c4c204d 224 SUPERFAMILY SSF51182 4 126 1.39E-29 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_A1067 fad29ec42957fc60209cf4a53c4c204d 224 SUPERFAMILY SSF51182 118 217 2.63E-16 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_A1067 fad29ec42957fc60209cf4a53c4c204d 224 Pfam PF12973 ChrR Cupin-like domain 19 108 1.7E-38 T 10-10-2018 IPR025979 ChrR-like cupin domain VF_A1067 fad29ec42957fc60209cf4a53c4c204d 224 Pfam PF12973 ChrR Cupin-like domain 135 214 3.8E-10 T 10-10-2018 IPR025979 ChrR-like cupin domain VF_A1067 fad29ec42957fc60209cf4a53c4c204d 224 Gene3D G3DSA:2.60.120.10 1 223 5.0E-72 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_A1104 959e257f63028dae89a7fbd4fa97f10c 489 Pfam PF07690 Major Facilitator Superfamily 11 400 7.8E-50 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_A1104 959e257f63028dae89a7fbd4fa97f10c 489 SUPERFAMILY SSF103473 6 410 7.32E-60 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A1104 959e257f63028dae89a7fbd4fa97f10c 489 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 6 479 2.6E-99 T 10-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 VF_A1104 959e257f63028dae89a7fbd4fa97f10c 489 Gene3D G3DSA:1.20.1720.10 7 210 1.4E-46 T 10-10-2018 VF_A1104 959e257f63028dae89a7fbd4fa97f10c 489 Gene3D G3DSA:1.20.1250.20 251 443 1.8E-10 T 10-10-2018 VF_2161 33ad4945e6ba5ca64b57ed9464e62dd6 498 SUPERFAMILY SSF58104 251 492 2.01E-63 T 10-10-2018 VF_2161 33ad4945e6ba5ca64b57ed9464e62dd6 498 Gene3D G3DSA:3.30.450.20 34 182 7.9E-26 T 10-10-2018 VF_2161 33ad4945e6ba5ca64b57ed9464e62dd6 498 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 350 490 1.6E-39 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_2161 33ad4945e6ba5ca64b57ed9464e62dd6 498 SMART SM01049 30 124 2.7E-13 T 10-10-2018 IPR033480 Single Cache domain 2 VF_2161 33ad4945e6ba5ca64b57ed9464e62dd6 498 SMART SM00283 277 496 4.5E-43 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_2161 33ad4945e6ba5ca64b57ed9464e62dd6 498 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 3 28 2.3E-26 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_2161 33ad4945e6ba5ca64b57ed9464e62dd6 498 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 404 433 2.3E-26 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_2161 33ad4945e6ba5ca64b57ed9464e62dd6 498 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 184 204 2.3E-26 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_2161 33ad4945e6ba5ca64b57ed9464e62dd6 498 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 452 481 2.3E-26 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_2161 33ad4945e6ba5ca64b57ed9464e62dd6 498 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 375 402 2.3E-26 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_2161 33ad4945e6ba5ca64b57ed9464e62dd6 498 Gene3D G3DSA:1.10.287.950 245 497 1.6E-59 T 10-10-2018 VF_2161 33ad4945e6ba5ca64b57ed9464e62dd6 498 Pfam PF17200 Single Cache domain 2 37 185 3.1E-29 T 10-10-2018 IPR033480 Single Cache domain 2 VF_1294 7df2f9b0bcc2fa1789de6e9e96d56c81 148 Gene3D G3DSA:1.10.1220.10 98 148 2.7E-18 T 10-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 VF_1294 7df2f9b0bcc2fa1789de6e9e96d56c81 148 Pfam PF17414 MatP C-terminal ribbon-helix-helix domain 88 147 1.5E-26 T 10-10-2018 IPR035375 MatP, C-terminal ribbon-helix-helix domain VF_1294 7df2f9b0bcc2fa1789de6e9e96d56c81 148 Hamap MF_01073 Macrodomain Ter protein [matP]. 1 148 27.616 T 10-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 VF_1294 7df2f9b0bcc2fa1789de6e9e96d56c81 148 Pfam PF06303 MatP N-terminal domain 2 85 6.6E-42 T 10-10-2018 IPR035087 MatP, N-terminal VF_1294 7df2f9b0bcc2fa1789de6e9e96d56c81 148 ProDom PD033720 UPF0268 YCBG DEHYDROGENASE PM0482 PBPRA1775 PLU1774 YPO1433/Y2737/YP0877 VV1664 HI1323 HD0178 1 132 2.0E-73 T 10-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 VF_1294 7df2f9b0bcc2fa1789de6e9e96d56c81 148 Gene3D G3DSA:1.20.1270.380 1 89 4.1E-42 T 10-10-2018 IPR038339 MatP, N-terminal domain superfamily VF_1481 425209a4b8edf4f06c0640b6ede91399 636 Gene3D G3DSA:3.30.1390.30 86 161 3.5E-48 T 10-10-2018 VF_1481 425209a4b8edf4f06c0640b6ede91399 636 Gene3D G3DSA:3.90.1310.10 65 249 3.5E-48 T 10-10-2018 VF_1481 425209a4b8edf4f06c0640b6ede91399 636 Pfam PF00905 Penicillin binding protein transpeptidase domain 286 623 4.9E-72 T 10-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 VF_1481 425209a4b8edf4f06c0640b6ede91399 636 Pfam PF03717 Penicillin-binding Protein dimerisation domain 66 240 1.7E-45 T 10-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 VF_1481 425209a4b8edf4f06c0640b6ede91399 636 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 4 630 50.407 T 10-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_1481 425209a4b8edf4f06c0640b6ede91399 636 SUPERFAMILY SSF56601 255 626 3.42E-91 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VF_1481 425209a4b8edf4f06c0640b6ede91399 636 SUPERFAMILY SSF56519 57 253 5.36E-49 T 10-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 VF_1481 425209a4b8edf4f06c0640b6ede91399 636 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 626 3.4E-220 T 10-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_1481 425209a4b8edf4f06c0640b6ede91399 636 Gene3D G3DSA:3.40.710.10 250 631 3.5E-89 T 10-10-2018 VF_2435 0f61f0f86916ea9f20229a92c394bf89 615 Gene3D G3DSA:2.170.130.10 28 157 7.7E-36 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VF_2435 0f61f0f86916ea9f20229a92c394bf89 615 SUPERFAMILY SSF56935 33 615 4.93E-106 T 10-10-2018 VF_2435 0f61f0f86916ea9f20229a92c394bf89 615 Pfam PF07715 TonB-dependent Receptor Plug Domain 47 152 2.2E-27 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain VF_2435 0f61f0f86916ea9f20229a92c394bf89 615 Gene3D G3DSA:2.40.170.20 159 615 5.5E-102 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VF_2435 0f61f0f86916ea9f20229a92c394bf89 615 Pfam PF00593 TonB dependent receptor 169 614 8.8E-42 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VF_2435 0f61f0f86916ea9f20229a92c394bf89 615 Hamap MF_01531 Vitamin B12 transporter BtuB [btuB]. 2 615 33.798 T 10-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 VF_2435 0f61f0f86916ea9f20229a92c394bf89 615 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 40 - T 10-10-2018 IPR010916 TonB box, conserved site VF_0267 ad7570434a8c40fe5df037a3d47707f7 338 SUPERFAMILY SSF53850 32 333 1.6E-64 T 10-10-2018 VF_0267 ad7570434a8c40fe5df037a3d47707f7 338 Gene3D G3DSA:3.40.190.10 134 333 2.0E-118 T 10-10-2018 VF_0267 ad7570434a8c40fe5df037a3d47707f7 338 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 29 332 9.1E-146 T 10-10-2018 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter GO:0015888|GO:0030975 VF_0267 ad7570434a8c40fe5df037a3d47707f7 338 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 22 337 7.9E-150 T 10-10-2018 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria GO:0015888|GO:0030288|GO:0030975 VF_0267 ad7570434a8c40fe5df037a3d47707f7 338 Gene3D G3DSA:3.40.190.10 34 308 2.0E-118 T 10-10-2018 VF_0267 ad7570434a8c40fe5df037a3d47707f7 338 Pfam PF13343 Bacterial extracellular solute-binding protein 84 303 1.3E-22 T 10-10-2018 VF_A0827 cff7a85d25c7d015be15d20458bb182b 301 Gene3D G3DSA:3.40.50.1980 170 273 1.2E-86 T 10-10-2018 VF_A0827 cff7a85d25c7d015be15d20458bb182b 301 Pfam PF01497 Periplasmic binding protein 45 274 1.5E-18 T 10-10-2018 IPR002491 ABC transporter periplasmic binding domain VF_A0827 cff7a85d25c7d015be15d20458bb182b 301 SUPERFAMILY SSF53807 17 281 4.32E-57 T 10-10-2018 VF_A0827 cff7a85d25c7d015be15d20458bb182b 301 Gene3D G3DSA:3.40.50.1980 25 279 1.2E-86 T 10-10-2018 VF_A0892 47d147755361d3cd325b264d327d8efa 156 Gene3D G3DSA:2.60.120.370 3 155 1.9E-37 T 10-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily VF_A0892 47d147755361d3cd325b264d327d8efa 156 Pfam PF04074 Domain of unknown function (DUF386) 13 151 3.4E-37 T 10-10-2018 IPR004375 YhcH/YjgK/YiaL family VF_A0892 47d147755361d3cd325b264d327d8efa 156 SUPERFAMILY SSF51197 12 153 1.62E-37 T 10-10-2018 VF_A0892 47d147755361d3cd325b264d327d8efa 156 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 12 154 1.9E-35 T 10-10-2018 IPR004375 YhcH/YjgK/YiaL family VF_A1041 9dff30ce4f4017d4e14819988939f0cf 123 SUPERFAMILY SSF101756 21 121 9.15E-23 T 10-10-2018 IPR036700 Bacterial OB-fold superfamily VF_A1041 9dff30ce4f4017d4e14819988939f0cf 123 Pfam PF04076 Bacterial OB fold (BOF) protein 24 112 5.5E-18 T 10-10-2018 IPR005220 Bacterial OB-fold VF_A1041 9dff30ce4f4017d4e14819988939f0cf 123 Gene3D G3DSA:2.40.50.200 19 123 1.8E-22 T 10-10-2018 IPR036700 Bacterial OB-fold superfamily VF_0122 0ce144def17f0ac3075744fe74ad49ee 312 PIRSF PIRSF026649 4 308 1.3E-75 T 10-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VF_0122 0ce144def17f0ac3075744fe74ad49ee 312 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 7 299 2.2E-77 T 10-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VF_0122 0ce144def17f0ac3075744fe74ad49ee 312 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 6 311 45.508 T 10-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 VF_0122 0ce144def17f0ac3075744fe74ad49ee 312 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 7 305 5.0E-127 T 10-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 VF_2273 92878de70dafb08ae50d8473980eb4c6 72 Gene3D G3DSA:2.30.170.50 1 71 1.6E-32 T 10-10-2018 VF_2273 92878de70dafb08ae50d8473980eb4c6 72 SUPERFAMILY SSF143800 1 68 2.43E-26 T 10-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2273 92878de70dafb08ae50d8473980eb4c6 72 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 67 1.8E-34 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_2273 92878de70dafb08ae50d8473980eb4c6 72 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 69 30.87 T 10-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_2273 92878de70dafb08ae50d8473980eb4c6 72 Pfam PF01197 Ribosomal protein L31 1 66 8.2E-31 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_2273 92878de70dafb08ae50d8473980eb4c6 72 ProSitePatterns PS01143 Ribosomal protein L31 signature. 36 57 - T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_2273 92878de70dafb08ae50d8473980eb4c6 72 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.7E-22 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_2273 92878de70dafb08ae50d8473980eb4c6 72 PRINTS PR01249 Ribosomal protein L31 signature 32 47 2.7E-22 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_2273 92878de70dafb08ae50d8473980eb4c6 72 PRINTS PR01249 Ribosomal protein L31 signature 47 65 2.7E-22 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_A0486 6405ff82e19465f951ee4ebfffc76be1 78 Gene3D G3DSA:3.30.70.330 1 78 8.0E-24 T 10-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VF_A0486 6405ff82e19465f951ee4ebfffc76be1 78 SUPERFAMILY SSF54928 2 77 4.7E-25 T 10-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 VF_A0486 6405ff82e19465f951ee4ebfffc76be1 78 SMART SM00360 2 75 1.0E-23 T 10-10-2018 IPR000504 RNA recognition motif domain GO:0003676 VF_A0486 6405ff82e19465f951ee4ebfffc76be1 78 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 73 1.8E-20 T 10-10-2018 IPR000504 RNA recognition motif domain GO:0003676 VF_A0398 6d082bd6ab4a665634742f56eebec7e3 527 Gene3D G3DSA:1.25.40.10 34 320 2.9E-17 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0398 6d082bd6ab4a665634742f56eebec7e3 527 SMART SM00267 359 527 1.0E-34 T 10-10-2018 IPR000160 GGDEF domain VF_A0398 6d082bd6ab4a665634742f56eebec7e3 527 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 367 524 9.1E-38 T 10-10-2018 IPR000160 GGDEF domain VF_A0398 6d082bd6ab4a665634742f56eebec7e3 527 SUPERFAMILY SSF55073 375 526 1.57E-36 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0398 6d082bd6ab4a665634742f56eebec7e3 527 Gene3D G3DSA:3.30.70.270 356 527 8.2E-44 T 10-10-2018 VF_A0398 6d082bd6ab4a665634742f56eebec7e3 527 SUPERFAMILY SSF48452 38 191 4.17E-13 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0398 6d082bd6ab4a665634742f56eebec7e3 527 Pfam PF00990 Diguanylate cyclase, GGDEF domain 371 523 1.1E-36 T 10-10-2018 IPR000160 GGDEF domain VF_0557 3cda62939295c6225302749e18337fee 555 Gene3D G3DSA:3.40.50.300 286 555 3.6E-77 T 10-10-2018 VF_0557 3cda62939295c6225302749e18337fee 555 Pfam PF00005 ABC transporter 340 473 6.4E-25 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0557 3cda62939295c6225302749e18337fee 555 Pfam PF00005 ABC transporter 22 191 3.7E-28 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0557 3cda62939295c6225302749e18337fee 555 SUPERFAMILY SSF52540 9 242 2.57E-48 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0557 3cda62939295c6225302749e18337fee 555 SMART SM00382 348 522 6.6E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0557 3cda62939295c6225302749e18337fee 555 SMART SM00382 31 236 6.5E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0557 3cda62939295c6225302749e18337fee 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0557 3cda62939295c6225302749e18337fee 555 Gene3D G3DSA:3.40.50.300 1 285 3.9E-84 T 10-10-2018 VF_0557 3cda62939295c6225302749e18337fee 555 SUPERFAMILY SSF52540 304 526 2.48E-46 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0557 3cda62939295c6225302749e18337fee 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 3 553 9.1E-293 T 10-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 VF_0557 3cda62939295c6225302749e18337fee 555 Pfam PF12848 ABC transporter 230 306 1.3E-12 T 10-10-2018 IPR032781 ABC-transporter extension domain VF_1300 7d7ccc466bba86eebbc3647253b2e0b6 203 SUPERFAMILY SSF46626 19 199 2.91E-28 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_1300 7d7ccc466bba86eebbc3647253b2e0b6 203 Gene3D G3DSA:1.10.760.10 43 203 7.6E-72 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_1300 7d7ccc466bba86eebbc3647253b2e0b6 203 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 6 185 2.8E-80 T 10-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO VF_1300 7d7ccc466bba86eebbc3647253b2e0b6 203 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 6 183 2.1E-81 T 10-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO VF_A0662 5317d8c1f09b8bc3dc9402ede4d658cd 141 Pfam PF00583 Acetyltransferase (GNAT) family 36 119 3.3E-11 T 10-10-2018 IPR000182 GNAT domain VF_A0662 5317d8c1f09b8bc3dc9402ede4d658cd 141 SUPERFAMILY SSF55729 13 141 4.46E-25 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A0662 5317d8c1f09b8bc3dc9402ede4d658cd 141 Gene3D G3DSA:3.40.630.30 39 141 4.9E-25 T 10-10-2018 VF_1313 4abc44babdb345e52515d1aaf58c7d87 244 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 109 239 8.2E-16 T 10-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 VF_1313 4abc44babdb345e52515d1aaf58c7d87 244 Gene3D G3DSA:1.10.530.10 99 242 4.8E-14 T 10-10-2018 VF_1313 4abc44babdb345e52515d1aaf58c7d87 244 SMART SM00047 92 229 0.0064 T 10-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 VF_2087 58a898a3f54963d9fbe0898ba7e4805d 223 Gene3D G3DSA:3.30.160.20 153 223 3.6E-18 T 10-10-2018 VF_2087 58a898a3f54963d9fbe0898ba7e4805d 223 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 8 221 3.8E-74 T 10-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 VF_2087 58a898a3f54963d9fbe0898ba7e4805d 223 SMART SM00535 20 148 3.6E-54 T 10-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 VF_2087 58a898a3f54963d9fbe0898ba7e4805d 223 ProSitePatterns PS00517 Ribonuclease III family signature. 37 45 - T 10-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 VF_2087 58a898a3f54963d9fbe0898ba7e4805d 223 Pfam PF14622 Ribonuclease-III-like 18 140 2.2E-33 T 10-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 VF_2087 58a898a3f54963d9fbe0898ba7e4805d 223 SMART SM00358 155 223 4.5E-20 T 10-10-2018 IPR014720 Double-stranded RNA-binding domain VF_2087 58a898a3f54963d9fbe0898ba7e4805d 223 Hamap MF_00104 Ribonuclease 3 [rnc]. 8 219 29.781 T 10-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 VF_2087 58a898a3f54963d9fbe0898ba7e4805d 223 Gene3D G3DSA:1.10.1520.10 1 146 1.4E-44 T 10-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 VF_2087 58a898a3f54963d9fbe0898ba7e4805d 223 SUPERFAMILY SSF69065 3 158 2.96E-50 T 10-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 VF_2087 58a898a3f54963d9fbe0898ba7e4805d 223 Pfam PF00035 Double-stranded RNA binding motif 155 221 5.2E-14 T 10-10-2018 IPR014720 Double-stranded RNA-binding domain VF_2087 58a898a3f54963d9fbe0898ba7e4805d 223 SUPERFAMILY SSF54768 108 222 3.3E-27 T 10-10-2018 VF_1161 e6c5bf3fe2eda2531f58f2ebc94ce5b5 385 Gene3D G3DSA:2.40.30.170 218 265 4.5E-31 T 10-10-2018 VF_1161 e6c5bf3fe2eda2531f58f2ebc94ce5b5 385 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 45 374 1.5E-32 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VF_1161 e6c5bf3fe2eda2531f58f2ebc94ce5b5 385 SUPERFAMILY SSF111369 53 260 4.84E-13 T 10-10-2018 VF_1161 e6c5bf3fe2eda2531f58f2ebc94ce5b5 385 Gene3D G3DSA:2.40.50.100 61 217 4.5E-31 T 10-10-2018 VF_1161 e6c5bf3fe2eda2531f58f2ebc94ce5b5 385 Gene3D G3DSA:2.40.420.20 300 375 9.9E-17 T 10-10-2018 VF_1161 e6c5bf3fe2eda2531f58f2ebc94ce5b5 385 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 261 8.3E-12 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VF_1161 e6c5bf3fe2eda2531f58f2ebc94ce5b5 385 Gene3D G3DSA:1.10.287.470 99 167 4.5E-31 T 10-10-2018 VF_A0658 b6c08c18226c8010f35e6976a3833345 136 Pfam PF04266 ASCH domain 42 132 1.5E-21 T 10-10-2018 IPR007374 ASCH domain VF_A0658 b6c08c18226c8010f35e6976a3833345 136 Gene3D G3DSA:3.10.400.10 1 136 6.7E-52 T 10-10-2018 VF_A0658 b6c08c18226c8010f35e6976a3833345 136 PIRSF PIRSF021320 1 136 1.5E-38 T 10-10-2018 IPR009326 Protein of unknown function DUF984 VF_A0658 b6c08c18226c8010f35e6976a3833345 136 SUPERFAMILY SSF88697 4 135 1.29E-45 T 10-10-2018 IPR015947 PUA-like superfamily VF_A0658 b6c08c18226c8010f35e6976a3833345 136 SMART SM01022 30 136 5.2E-26 T 10-10-2018 IPR007374 ASCH domain VF_0653 18d44338d493b9aa45a949e9c20f5394 169 Gene3D G3DSA:3.40.1280.10 7 149 8.4E-20 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VF_0653 18d44338d493b9aa45a949e9c20f5394 169 Pfam PF00588 SpoU rRNA Methylase family 6 139 6.8E-20 T 10-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VF_0653 18d44338d493b9aa45a949e9c20f5394 169 SUPERFAMILY SSF75217 3 142 1.44E-26 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases VF_A0667 32c9bcec41604fc562c6ac07bccc9573 234 Pfam PF04286 Protein of unknown function (DUF445) 142 234 7.0E-10 T 10-10-2018 IPR007383 Protein of unknown function DUF445 VF_A0173 e87618476f4dd158892e5e8205a44794 293 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 8 21 - T 10-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 VF_A0173 e87618476f4dd158892e5e8205a44794 293 SUPERFAMILY SSF48179 167 291 1.47E-37 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VF_A0173 e87618476f4dd158892e5e8205a44794 293 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 163 6.9E-50 T 10-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 VF_A0173 e87618476f4dd158892e5e8205a44794 293 PIRSF PIRSF000103 1 293 4.3E-75 T 10-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 VF_A0173 e87618476f4dd158892e5e8205a44794 293 SUPERFAMILY SSF51735 4 166 3.38E-53 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0173 e87618476f4dd158892e5e8205a44794 293 Gene3D G3DSA:1.10.1040.10 167 293 7.9E-36 T 10-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VF_A0173 e87618476f4dd158892e5e8205a44794 293 Gene3D G3DSA:3.40.50.720 2 166 1.3E-53 T 10-10-2018 VF_A0173 e87618476f4dd158892e5e8205a44794 293 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 168 287 1.4E-30 T 10-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 VF_0118 d8ee405fe55d5d3533e89773b0b70cb6 257 Gene3D G3DSA:3.40.50.1820 2 255 2.0E-66 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_0118 d8ee405fe55d5d3533e89773b0b70cb6 257 Pfam PF00561 alpha/beta hydrolase fold 16 240 7.4E-21 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_0118 d8ee405fe55d5d3533e89773b0b70cb6 257 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 5 254 46.342 T 10-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 VF_0118 d8ee405fe55d5d3533e89773b0b70cb6 257 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 12 252 6.7E-99 T 10-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 VF_0118 d8ee405fe55d5d3533e89773b0b70cb6 257 SUPERFAMILY SSF53474 4 255 1.16E-48 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_0852 65387ae49c78cb1da78885286538ac49 511 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 142 158 - T 10-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 VF_0852 65387ae49c78cb1da78885286538ac49 511 Gene3D G3DSA:1.10.275.10 7 200 3.0E-56 T 10-10-2018 IPR024083 Fumarase/histidase, N-terminal VF_0852 65387ae49c78cb1da78885286538ac49 511 Gene3D G3DSA:1.20.200.10 201 508 2.4E-101 T 10-10-2018 VF_0852 65387ae49c78cb1da78885286538ac49 511 SUPERFAMILY SSF48557 3 509 3.14E-172 T 10-10-2018 IPR008948 L-Aspartase-like GO:0003824 VF_0852 65387ae49c78cb1da78885286538ac49 511 Pfam PF00221 Aromatic amino acid lyase 13 474 8.3E-162 T 10-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 VF_1979 413be832b412f2b02b5d67c3c0ababbb 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 1.9E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1979 413be832b412f2b02b5d67c3c0ababbb 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 1.9E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1979 413be832b412f2b02b5d67c3c0ababbb 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 1.9E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1979 413be832b412f2b02b5d67c3c0ababbb 309 Gene3D G3DSA:3.40.190.10 174 272 4.0E-24 T 10-10-2018 VF_1979 413be832b412f2b02b5d67c3c0ababbb 309 Pfam PF03466 LysR substrate binding domain 98 298 5.0E-11 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1979 413be832b412f2b02b5d67c3c0ababbb 309 SUPERFAMILY SSF53850 93 301 5.18E-22 T 10-10-2018 VF_1979 413be832b412f2b02b5d67c3c0ababbb 309 Gene3D G3DSA:3.40.190.10 93 294 4.0E-24 T 10-10-2018 VF_1979 413be832b412f2b02b5d67c3c0ababbb 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 70 3.9E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1979 413be832b412f2b02b5d67c3c0ababbb 309 SUPERFAMILY SSF46785 8 89 7.58E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1979 413be832b412f2b02b5d67c3c0ababbb 309 Gene3D G3DSA:1.10.10.10 1 91 1.1E-25 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0223 f801291b2fe5d02862821de4c2c8f86e 217 Gene3D G3DSA:2.40.10.330 71 121 2.4E-57 T 10-10-2018 VF_0223 f801291b2fe5d02862821de4c2c8f86e 217 Gene3D G3DSA:3.10.50.40 3 154 2.4E-57 T 10-10-2018 VF_0223 f801291b2fe5d02862821de4c2c8f86e 217 SUPERFAMILY SSF54534 2 139 2.36E-32 T 10-10-2018 VF_0223 f801291b2fe5d02862821de4c2c8f86e 217 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 3 136 2.9E-11 T 10-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VF_2544 832d80ea80a7c1f9879a968996e3de8f 315 Pfam PF02911 Formyl transferase, C-terminal domain 207 304 6.5E-28 T 10-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VF_2544 832d80ea80a7c1f9879a968996e3de8f 315 Pfam PF00551 Formyl transferase 6 182 2.3E-46 T 10-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VF_2544 832d80ea80a7c1f9879a968996e3de8f 315 SUPERFAMILY SSF53328 3 207 2.88E-67 T 10-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VF_2544 832d80ea80a7c1f9879a968996e3de8f 315 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 307 36.464 T 10-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 VF_2544 832d80ea80a7c1f9879a968996e3de8f 315 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 136 159 - T 10-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VF_2544 832d80ea80a7c1f9879a968996e3de8f 315 Gene3D G3DSA:3.10.25.10 210 314 1.2E-35 T 10-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VF_2544 832d80ea80a7c1f9879a968996e3de8f 315 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 312 2.7E-105 T 10-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 VF_2544 832d80ea80a7c1f9879a968996e3de8f 315 SUPERFAMILY SSF50486 208 310 2.04E-33 T 10-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 VF_2544 832d80ea80a7c1f9879a968996e3de8f 315 Gene3D G3DSA:3.40.50.170 1 209 3.5E-87 T 10-10-2018 VF_A0641 b8556e81971354b73d17f46e69504be5 102 Pfam PF13698 Domain of unknown function (DUF4156) 20 98 1.2E-10 T 10-10-2018 IPR025294 Protein of unknown function DUF4156 VF_2232 bdb8e98ad4aa5c87cc856b7a16faa8bb 212 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 17 200 4.8E-59 T 10-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 VF_2232 bdb8e98ad4aa5c87cc856b7a16faa8bb 212 ProSitePatterns PS00893 Nudix box signature. 98 119 - T 10-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VF_2232 bdb8e98ad4aa5c87cc856b7a16faa8bb 212 SUPERFAMILY SSF55811 15 208 3.38E-46 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VF_2232 bdb8e98ad4aa5c87cc856b7a16faa8bb 212 Pfam PF00293 NUDIX domain 59 177 2.9E-14 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VF_2232 bdb8e98ad4aa5c87cc856b7a16faa8bb 212 Gene3D G3DSA:3.90.79.10 5 210 2.4E-64 T 10-10-2018 VF_0896 e77229500876a58e0c188a9e1947418c 209 Pfam PF04994 TfoX C-terminal domain 129 208 5.5E-26 T 10-10-2018 IPR007077 TfoX, C-terminal VF_0896 e77229500876a58e0c188a9e1947418c 209 PIRSF PIRSF028788 15 209 9.6E-32 T 10-10-2018 IPR026256 Transcriptional regulator, TfoX/Sxy-type VF_0896 e77229500876a58e0c188a9e1947418c 209 Gene3D G3DSA:3.30.1460.30 17 119 7.7E-23 T 10-10-2018 VF_0896 e77229500876a58e0c188a9e1947418c 209 Gene3D G3DSA:1.10.150.20 128 209 3.2E-13 T 10-10-2018 VF_0896 e77229500876a58e0c188a9e1947418c 209 Pfam PF04993 TfoX N-terminal domain 27 115 4.8E-24 T 10-10-2018 IPR007076 TfoX, N-terminal VF_0896 e77229500876a58e0c188a9e1947418c 209 SUPERFAMILY SSF159894 19 116 4.18E-25 T 10-10-2018 VF_1989 6d9be2f35a2c0e94912b28c9963563f0 304 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 2 302 39.415 T 10-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 VF_1989 6d9be2f35a2c0e94912b28c9963563f0 304 Pfam PF04381 Putative exonuclease, RdgC 2 299 4.9E-127 T 10-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 VF_0875 cdf68f5c000ba5c08a83724bea350fb9 607 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 131 593 1.3E-122 T 10-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 VF_0875 cdf68f5c000ba5c08a83724bea350fb9 607 Pfam PF02355 Protein export membrane protein 425 594 6.2E-19 T 10-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VF_0875 cdf68f5c000ba5c08a83724bea350fb9 607 Gene3D G3DSA:3.30.70.3400 234 424 1.5E-45 T 10-10-2018 VF_0875 cdf68f5c000ba5c08a83724bea350fb9 607 Gene3D G3DSA:3.30.70.3400 131 209 2.3E-5 T 10-10-2018 VF_0875 cdf68f5c000ba5c08a83724bea350fb9 607 Gene3D G3DSA:1.20.1640.10 425 602 1.3E-9 T 10-10-2018 VF_0875 cdf68f5c000ba5c08a83724bea350fb9 607 Pfam PF13721 SecD export protein N-terminal TM region 10 101 3.5E-23 T 10-10-2018 IPR027398 SecD export protein N-terminal TM domain VF_0875 cdf68f5c000ba5c08a83724bea350fb9 607 Gene3D G3DSA:3.30.1360.200 286 423 1.5E-45 T 10-10-2018 VF_0875 cdf68f5c000ba5c08a83724bea350fb9 607 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 343 586 1.6E-71 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VF_0875 cdf68f5c000ba5c08a83724bea350fb9 607 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 11 607 44.737 T 10-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 VF_0875 cdf68f5c000ba5c08a83724bea350fb9 607 Gene3D G3DSA:3.30.70.260 38 108 5.7E-6 T 10-10-2018 VF_0875 cdf68f5c000ba5c08a83724bea350fb9 607 SUPERFAMILY SSF82866 402 599 1.02E-38 T 10-10-2018 VF_2236 c45711b6683cf2098ce365da13e99a7a 533 SUPERFAMILY SSF58104 224 533 9.55E-72 T 10-10-2018 VF_2236 c45711b6683cf2098ce365da13e99a7a 533 SMART SM00283 271 532 8.9E-64 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_2236 c45711b6683cf2098ce365da13e99a7a 533 Gene3D G3DSA:1.10.287.950 204 533 9.2E-68 T 10-10-2018 VF_2236 c45711b6683cf2098ce365da13e99a7a 533 SMART SM00304 204 256 1.2E-5 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_2236 c45711b6683cf2098ce365da13e99a7a 533 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 346 499 4.2E-41 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0488 f4f4de69e53138df8b68eb34a84bacc4 316 SUPERFAMILY SSF55120 9 248 7.77E-76 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0488 f4f4de69e53138df8b68eb34a84bacc4 316 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 32 175 3.2E-54 T 10-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 VF_0488 f4f4de69e53138df8b68eb34a84bacc4 316 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 186 248 6.8E-20 T 10-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 VF_0488 f4f4de69e53138df8b68eb34a84bacc4 316 SUPERFAMILY SSF88697 250 310 1.84E-14 T 10-10-2018 IPR015947 PUA-like superfamily VF_0488 f4f4de69e53138df8b68eb34a84bacc4 316 Gene3D G3DSA:2.30.130.10 249 312 2.3E-24 T 10-10-2018 IPR036974 PUA domain superfamily GO:0003723 VF_0488 f4f4de69e53138df8b68eb34a84bacc4 316 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 251 308 1.8E-19 T 10-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0488 f4f4de69e53138df8b68eb34a84bacc4 316 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 10 218 5.3E-76 T 10-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0488 f4f4de69e53138df8b68eb34a84bacc4 316 Gene3D G3DSA:3.30.2350.10 1 248 1.4E-84 T 10-10-2018 VF_0488 f4f4de69e53138df8b68eb34a84bacc4 316 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 10 308 18.116 T 10-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_A0959 3fe39c311fc847777faf0a715c70b6d2 656 SMART SM00267 487 656 2.2E-18 T 10-10-2018 IPR000160 GGDEF domain VF_A0959 3fe39c311fc847777faf0a715c70b6d2 656 Pfam PF00990 Diguanylate cyclase, GGDEF domain 499 652 1.3E-23 T 10-10-2018 IPR000160 GGDEF domain VF_A0959 3fe39c311fc847777faf0a715c70b6d2 656 SUPERFAMILY SSF55073 507 652 3.06E-25 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0959 3fe39c311fc847777faf0a715c70b6d2 656 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 496 652 5.0E-22 T 10-10-2018 IPR000160 GGDEF domain VF_A0959 3fe39c311fc847777faf0a715c70b6d2 656 Gene3D G3DSA:3.30.70.270 490 656 3.1E-28 T 10-10-2018 VF_A0714 4accf0ca0fe92dd33d8af551772be5bc 772 Gene3D G3DSA:3.10.20.310 351 428 1.9E-6 T 10-10-2018 VF_A0714 4accf0ca0fe92dd33d8af551772be5bc 772 SUPERFAMILY SSF52151 42 328 1.31E-52 T 10-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VF_A0714 4accf0ca0fe92dd33d8af551772be5bc 772 Gene3D G3DSA:3.40.1090.10 33 159 9.4E-28 T 10-10-2018 VF_A0714 4accf0ca0fe92dd33d8af551772be5bc 772 Pfam PF01734 Patatin-like phospholipase 47 238 1.7E-25 T 10-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 VF_1720 1f045d7073e691aad85fa7e4e6922530 340 SUPERFAMILY SSF47413 4 63 1.1E-16 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_1720 1f045d7073e691aad85fa7e4e6922530 340 Gene3D G3DSA:1.10.260.40 3 64 3.1E-20 T 10-10-2018 VF_1720 1f045d7073e691aad85fa7e4e6922530 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 10-10-2018 VF_1720 1f045d7073e691aad85fa7e4e6922530 340 Gene3D G3DSA:3.40.50.2300 165 337 6.6E-71 T 10-10-2018 VF_1720 1f045d7073e691aad85fa7e4e6922530 340 SUPERFAMILY SSF53822 65 339 3.26E-67 T 10-10-2018 IPR028082 Periplasmic binding protein-like I VF_1720 1f045d7073e691aad85fa7e4e6922530 340 SMART SM00354 5 75 1.4E-31 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_1720 1f045d7073e691aad85fa7e4e6922530 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 52 1.2E-16 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_1720 1f045d7073e691aad85fa7e4e6922530 340 Gene3D G3DSA:3.40.50.2300 66 332 6.6E-71 T 10-10-2018 VF_1720 1f045d7073e691aad85fa7e4e6922530 340 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 66 331 1.4E-47 T 10-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain VF_1443 8b8ee77b967a85dc79d22ba1c6cc366c 93 SUPERFAMILY SSF47413 35 78 1.18E-10 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_1443 8b8ee77b967a85dc79d22ba1c6cc366c 93 SMART SM00530 34 88 2.9E-6 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_1443 8b8ee77b967a85dc79d22ba1c6cc366c 93 Pfam PF01381 Helix-turn-helix 35 71 2.2E-9 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_1443 8b8ee77b967a85dc79d22ba1c6cc366c 93 Gene3D G3DSA:1.10.260.40 34 92 1.2E-17 T 10-10-2018 VF_0750 37b8db7db2d8fb03a10b5e10d9235e9c 107 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 10 106 2.1E-38 T 10-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS VF_0750 37b8db7db2d8fb03a10b5e10d9235e9c 107 Pfam PF02410 Ribosomal silencing factor during starvation 15 106 1.7E-27 T 10-10-2018 VF_0750 37b8db7db2d8fb03a10b5e10d9235e9c 107 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 107 24.837 T 10-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS VF_0750 37b8db7db2d8fb03a10b5e10d9235e9c 107 SUPERFAMILY SSF81301 5 107 1.19E-37 T 10-10-2018 VF_0750 37b8db7db2d8fb03a10b5e10d9235e9c 107 Gene3D G3DSA:3.30.460.10 3 107 2.4E-36 T 10-10-2018 VF_0254 e8d1e6176f739a0153ff151b2ededf4c 166 SUPERFAMILY SSF54211 79 158 4.55E-26 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_0254 e8d1e6176f739a0153ff151b2ededf4c 166 Gene3D G3DSA:3.30.230.10 74 166 9.6E-36 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_0254 e8d1e6176f739a0153ff151b2ededf4c 166 SUPERFAMILY SSF54768 9 75 5.44E-23 T 10-10-2018 VF_0254 e8d1e6176f739a0153ff151b2ededf4c 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 4.9E-29 T 10-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 VF_0254 e8d1e6176f739a0153ff151b2ededf4c 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 9 162 1.7E-67 T 10-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 VF_0254 e8d1e6176f739a0153ff151b2ededf4c 166 Gene3D G3DSA:3.30.160.20 1 72 8.9E-32 T 10-10-2018 VF_0254 e8d1e6176f739a0153ff151b2ededf4c 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 74 2.6E-28 T 10-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 VF_0254 e8d1e6176f739a0153ff151b2ededf4c 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 10-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site VF_0254 e8d1e6176f739a0153ff151b2ededf4c 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 34.256 T 10-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 VF_A0703 27440d97fe8534c9466a937a5d875b78 955 SUPERFAMILY SSF53383 474 948 3.75E-94 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_A0703 27440d97fe8534c9466a937a5d875b78 955 Pfam PF02347 Glycine cleavage system P-protein 16 438 1.3E-184 T 10-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 VF_A0703 27440d97fe8534c9466a937a5d875b78 955 Pfam PF02347 Glycine cleavage system P-protein 459 733 1.5E-9 T 10-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 VF_A0703 27440d97fe8534c9466a937a5d875b78 955 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 947 0.0 T 10-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 VF_A0703 27440d97fe8534c9466a937a5d875b78 955 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 953 25.48 T 10-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 VF_A0703 27440d97fe8534c9466a937a5d875b78 955 SUPERFAMILY SSF53383 17 436 3.84E-99 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_A0703 27440d97fe8534c9466a937a5d875b78 955 Gene3D G3DSA:3.40.640.10 524 748 5.0E-58 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_A0703 27440d97fe8534c9466a937a5d875b78 955 Gene3D G3DSA:3.40.640.10 95 353 3.1E-106 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_A0703 27440d97fe8534c9466a937a5d875b78 955 Gene3D G3DSA:3.90.1150.10 761 897 2.6E-41 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_0624 1f423277bb5c9ac41a24ace8630aeb0a 428 PRINTS PR00481 Cytosol aminopeptidase signature 272 292 2.5E-44 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VF_0624 1f423277bb5c9ac41a24ace8630aeb0a 428 PRINTS PR00481 Cytosol aminopeptidase signature 300 315 2.5E-44 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VF_0624 1f423277bb5c9ac41a24ace8630aeb0a 428 PRINTS PR00481 Cytosol aminopeptidase signature 213 234 2.5E-44 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VF_0624 1f423277bb5c9ac41a24ace8630aeb0a 428 PRINTS PR00481 Cytosol aminopeptidase signature 250 271 2.5E-44 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VF_0624 1f423277bb5c9ac41a24ace8630aeb0a 428 PRINTS PR00481 Cytosol aminopeptidase signature 191 208 2.5E-44 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VF_0624 1f423277bb5c9ac41a24ace8630aeb0a 428 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 108 422 5.5E-102 T 10-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VF_0624 1f423277bb5c9ac41a24ace8630aeb0a 428 Gene3D G3DSA:3.40.630.10 93 428 1.4E-104 T 10-10-2018 VF_0624 1f423277bb5c9ac41a24ace8630aeb0a 428 SUPERFAMILY SSF53187 107 427 4.71E-99 T 10-10-2018 VF_0624 1f423277bb5c9ac41a24ace8630aeb0a 428 PIRSF PIRSF036388 1 428 1.2E-213 T 10-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 VF_0624 1f423277bb5c9ac41a24ace8630aeb0a 428 Pfam PF12404 Peptidase 5 80 3.4E-29 T 10-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 VF_0624 1f423277bb5c9ac41a24ace8630aeb0a 428 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 276 283 - T 10-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VF_1570 652dd8fef6572669bb14bf91477a8d07 232 Pfam PF00072 Response regulator receiver domain 5 113 2.3E-26 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1570 652dd8fef6572669bb14bf91477a8d07 232 SMART SM00862 153 229 5.5E-19 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_1570 652dd8fef6572669bb14bf91477a8d07 232 SUPERFAMILY SSF52172 3 181 3.37E-36 T 10-10-2018 IPR011006 CheY-like superfamily VF_1570 652dd8fef6572669bb14bf91477a8d07 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 229 4.9E-20 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_1570 652dd8fef6572669bb14bf91477a8d07 232 SMART SM00448 3 113 2.1E-35 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1570 652dd8fef6572669bb14bf91477a8d07 232 Gene3D G3DSA:3.40.50.2300 1 125 3.3E-32 T 10-10-2018 VF_1570 652dd8fef6572669bb14bf91477a8d07 232 Gene3D G3DSA:1.10.10.10 128 232 2.3E-30 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0021 0194d83936122c7cf069d57c6379950c 313 SUPERFAMILY SSF53850 92 298 2.31E-38 T 10-10-2018 VF_0021 0194d83936122c7cf069d57c6379950c 313 Gene3D G3DSA:1.10.10.10 3 90 8.4E-27 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0021 0194d83936122c7cf069d57c6379950c 313 SUPERFAMILY SSF46785 8 87 5.72E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0021 0194d83936122c7cf069d57c6379950c 313 Gene3D G3DSA:3.40.190.10 94 295 5.6E-63 T 10-10-2018 VF_0021 0194d83936122c7cf069d57c6379950c 313 Pfam PF03466 LysR substrate binding domain 103 299 6.4E-21 T 10-10-2018 IPR005119 LysR, substrate-binding VF_0021 0194d83936122c7cf069d57c6379950c 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 4.6E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0021 0194d83936122c7cf069d57c6379950c 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 4.6E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0021 0194d83936122c7cf069d57c6379950c 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 4.6E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0021 0194d83936122c7cf069d57c6379950c 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 2.2E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0021 0194d83936122c7cf069d57c6379950c 313 Gene3D G3DSA:3.40.190.10 172 271 5.6E-63 T 10-10-2018 VF_A0756 c082294e00b823b119fcc4bc9a9cece6 315 Gene3D G3DSA:1.10.8.760 155 219 2.0E-26 T 10-10-2018 VF_A0756 c082294e00b823b119fcc4bc9a9cece6 315 PIRSF PIRSF020419 2 299 9.9E-69 T 10-10-2018 IPR016773 Ferric uptake regulator, CjrA, predicted VF_A0756 c082294e00b823b119fcc4bc9a9cece6 315 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 55 256 2.6E-57 T 10-10-2018 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN VF_A0756 c082294e00b823b119fcc4bc9a9cece6 315 Gene3D G3DSA:3.40.50.11550 48 269 2.0E-26 T 10-10-2018 VF_A0756 c082294e00b823b119fcc4bc9a9cece6 315 SUPERFAMILY SSF159501 33 281 9.59E-74 T 10-10-2018 VF_0345 f2de3799216576879d03dbfafab8ee98 401 SUPERFAMILY SSF53756 1 399 1.61E-69 T 10-10-2018 VF_0345 f2de3799216576879d03dbfafab8ee98 401 Pfam PF13439 Glycosyltransferase Family 4 14 219 8.0E-14 T 10-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 VF_0345 f2de3799216576879d03dbfafab8ee98 401 Pfam PF00534 Glycosyl transferases group 1 227 377 6.3E-30 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 VF_0345 f2de3799216576879d03dbfafab8ee98 401 Gene3D G3DSA:3.40.50.2000 225 382 4.0E-34 T 10-10-2018 VF_0322 5c98d8cda05db019e35eea00c435017f 575 Gene3D G3DSA:3.30.70.1450 290 364 3.9E-12 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_0322 5c98d8cda05db019e35eea00c435017f 575 Gene3D G3DSA:3.30.70.1450 207 286 2.6E-14 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_0322 5c98d8cda05db019e35eea00c435017f 575 Pfam PF02080 TrkA-C domain 294 350 3.6E-9 T 10-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VF_0322 5c98d8cda05db019e35eea00c435017f 575 Pfam PF02080 TrkA-C domain 210 277 1.3E-11 T 10-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VF_0322 5c98d8cda05db019e35eea00c435017f 575 Pfam PF03600 Citrate transporter 34 519 1.7E-22 T 10-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 VF_0322 5c98d8cda05db019e35eea00c435017f 575 SUPERFAMILY SSF116726 206 284 9.16E-18 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_0322 5c98d8cda05db019e35eea00c435017f 575 SUPERFAMILY SSF116726 291 353 4.84E-13 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_0631 879b3e3cba328fa545c8e374e2a43c96 203 PIRSF PIRSF006170 1 203 3.9E-59 T 10-10-2018 IPR026039 Uncharacterised protein family UPF0070 VF_0631 879b3e3cba328fa545c8e374e2a43c96 203 Pfam PF09976 Tetratricopeptide repeat-like domain 15 202 6.3E-59 T 10-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 VF_0631 879b3e3cba328fa545c8e374e2a43c96 203 Gene3D G3DSA:1.25.40.10 7 202 9.0E-10 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0631 879b3e3cba328fa545c8e374e2a43c96 203 SUPERFAMILY SSF48452 91 189 1.26E-6 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_2107 7765f1e4478cf0690fd24628e28985c3 230 Gene3D G3DSA:3.30.110.170 30 227 9.5E-50 T 10-10-2018 VF_2107 7765f1e4478cf0690fd24628e28985c3 230 Gene3D G3DSA:3.30.70.2970 40 147 9.5E-50 T 10-10-2018 VF_2107 7765f1e4478cf0690fd24628e28985c3 230 Pfam PF04402 Protein of unknown function (DUF541) 29 227 4.9E-41 T 10-10-2018 IPR007497 Protein of unknown function DUF541 VF_0647 09d095ef7862f8d3d9d187f011d092e2 425 Pfam PF00375 Sodium:dicarboxylate symporter family 11 409 1.7E-88 T 10-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VF_0647 09d095ef7862f8d3d9d187f011d092e2 425 PRINTS PR00173 Glutamate-aspartate symporter signature 234 253 4.6E-44 T 10-10-2018 VF_0647 09d095ef7862f8d3d9d187f011d092e2 425 PRINTS PR00173 Glutamate-aspartate symporter signature 82 107 4.6E-44 T 10-10-2018 VF_0647 09d095ef7862f8d3d9d187f011d092e2 425 PRINTS PR00173 Glutamate-aspartate symporter signature 52 72 4.6E-44 T 10-10-2018 VF_0647 09d095ef7862f8d3d9d187f011d092e2 425 PRINTS PR00173 Glutamate-aspartate symporter signature 152 174 4.6E-44 T 10-10-2018 VF_0647 09d095ef7862f8d3d9d187f011d092e2 425 PRINTS PR00173 Glutamate-aspartate symporter signature 363 383 4.6E-44 T 10-10-2018 VF_0647 09d095ef7862f8d3d9d187f011d092e2 425 PRINTS PR00173 Glutamate-aspartate symporter signature 336 355 4.6E-44 T 10-10-2018 VF_0647 09d095ef7862f8d3d9d187f011d092e2 425 PRINTS PR00173 Glutamate-aspartate symporter signature 301 327 4.6E-44 T 10-10-2018 VF_0647 09d095ef7862f8d3d9d187f011d092e2 425 Gene3D G3DSA:1.10.3860.10 2 423 9.3E-98 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VF_0647 09d095ef7862f8d3d9d187f011d092e2 425 SUPERFAMILY SSF118215 9 409 8.37E-87 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VF_1508 bc9af3e2f477db19304d14532d057cd1 486 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 53 439 1.2E-109 T 10-10-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 VF_1508 bc9af3e2f477db19304d14532d057cd1 486 Pfam PF03606 C4-dicarboxylate anaerobic carrier 5 447 7.0E-79 T 10-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 VF_A0841 e95fbd4b9097f776bfdad6727879d75b 419 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 112 132 1.1E-38 T 10-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VF_A0841 e95fbd4b9097f776bfdad6727879d75b 419 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 242 267 1.1E-38 T 10-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VF_A0841 e95fbd4b9097f776bfdad6727879d75b 419 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 201 219 1.1E-38 T 10-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VF_A0841 e95fbd4b9097f776bfdad6727879d75b 419 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 344 365 1.1E-38 T 10-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VF_A0841 e95fbd4b9097f776bfdad6727879d75b 419 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 81 102 1.1E-38 T 10-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VF_A0841 e95fbd4b9097f776bfdad6727879d75b 419 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 291 317 1.1E-38 T 10-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VF_A0841 e95fbd4b9097f776bfdad6727879d75b 419 Pfam PF00368 Hydroxymethylglutaryl-coenzyme A reductase 53 419 1.7E-112 T 10-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VF_A0841 e95fbd4b9097f776bfdad6727879d75b 419 Gene3D G3DSA:3.90.770.10 92 405 1.2E-109 T 10-10-2018 IPR023074 Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain superfamily GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VF_A0841 e95fbd4b9097f776bfdad6727879d75b 419 ProSitePatterns PS00318 Hydroxymethylglutaryl-coenzyme A reductases signature 2. 356 363 - T 10-10-2018 IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VF_A0841 e95fbd4b9097f776bfdad6727879d75b 419 SUPERFAMILY SSF55035 146 261 2.75E-35 T 10-10-2018 IPR009023 Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily GO:0050662 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VF_A0841 e95fbd4b9097f776bfdad6727879d75b 419 Gene3D G3DSA:3.30.70.420 146 261 1.2E-109 T 10-10-2018 IPR009023 Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily GO:0050662 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VF_A0841 e95fbd4b9097f776bfdad6727879d75b 419 SUPERFAMILY SSF56542 25 409 2.62E-79 T 10-10-2018 IPR009029 Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain superfamily GO:0015936|GO:0016616|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 Pfam PF03949 Malic enzyme, NAD binding domain 268 528 2.6E-104 T 10-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 SMART SM00919 268 528 1.0E-135 T 10-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 PRINTS PR00072 Malic enzyme signature 144 173 5.1E-73 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 PRINTS PR00072 Malic enzyme signature 405 421 5.1E-73 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 PRINTS PR00072 Malic enzyme signature 264 280 5.1E-73 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 PRINTS PR00072 Malic enzyme signature 84 108 5.1E-73 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 PRINTS PR00072 Malic enzyme signature 295 311 5.1E-73 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 PRINTS PR00072 Malic enzyme signature 239 257 5.1E-73 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 PRINTS PR00072 Malic enzyme signature 180 202 5.1E-73 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 SUPERFAMILY SSF53223 4 267 1.87E-109 T 10-10-2018 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 SUPERFAMILY SSF51735 268 559 4.63E-96 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 SMART SM01274 78 258 4.2E-106 T 10-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 Gene3D G3DSA:3.40.50.720 266 562 1.0E-109 T 10-10-2018 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 Gene3D G3DSA:3.40.50.10380 13 265 2.0E-114 T 10-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 ProSitePatterns PS00331 Malic enzymes signature. 264 280 - T 10-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 1 562 72.113 T 10-10-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38|MetaCyc: PWY-6339 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 Pfam PF00390 Malic enzyme, N-terminal domain 78 258 1.7E-78 T 10-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 VF_1558 c8b8da2f3877c6a423ac394c02e66b17 562 PIRSF PIRSF000106 2 560 1.3E-226 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VF_A0053 f1850819f37fe9356af2858843aeaa26 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 7.5E-21 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0053 f1850819f37fe9356af2858843aeaa26 300 SUPERFAMILY SSF46785 1 84 1.54E-23 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0053 f1850819f37fe9356af2858843aeaa26 300 Gene3D G3DSA:3.40.190.290 95 295 8.4E-62 T 10-10-2018 VF_A0053 f1850819f37fe9356af2858843aeaa26 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 5.6E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0053 f1850819f37fe9356af2858843aeaa26 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 5.6E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0053 f1850819f37fe9356af2858843aeaa26 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 5.6E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0053 f1850819f37fe9356af2858843aeaa26 300 SUPERFAMILY SSF53850 94 297 7.14E-40 T 10-10-2018 VF_A0053 f1850819f37fe9356af2858843aeaa26 300 Pfam PF03466 LysR substrate binding domain 94 293 1.2E-38 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0053 f1850819f37fe9356af2858843aeaa26 300 Gene3D G3DSA:1.10.10.10 6 94 1.8E-26 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0732 779261d714d32e155adc1baa596d5560 267 SMART SM00850 168 267 5.3E-23 T 10-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 VF_A0732 779261d714d32e155adc1baa596d5560 267 Gene3D G3DSA:3.40.50.2300 1 139 1.2E-32 T 10-10-2018 VF_A0732 779261d714d32e155adc1baa596d5560 267 Gene3D G3DSA:2.40.50.40 160 232 4.0E-11 T 10-10-2018 VF_A0732 779261d714d32e155adc1baa596d5560 267 SUPERFAMILY SSF52172 4 136 2.7E-32 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0732 779261d714d32e155adc1baa596d5560 267 Pfam PF00072 Response regulator receiver domain 8 115 9.2E-23 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0732 779261d714d32e155adc1baa596d5560 267 SMART SM00448 5 117 6.9E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0732 779261d714d32e155adc1baa596d5560 267 Pfam PF04397 LytTr DNA-binding domain 169 266 3.0E-24 T 10-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 VF_A0532 2ead229a5d505567e7e64debfa03a65f 47 Gene3D G3DSA:1.10.246.160 5 46 1.8E-5 T 10-10-2018 IPR038213 IFI6/IFI27-like domain superfamily VF_A0532 2ead229a5d505567e7e64debfa03a65f 47 Pfam PF04927 Seed maturation protein 6 45 7.9E-7 T 10-10-2018 IPR007011 Late embryogenesis abundant protein, SMP subgroup VF_0554 14687cd9533549845ac1900e94884c7c 377 Gene3D G3DSA:1.10.3660.10 248 373 1.7E-48 T 10-10-2018 VF_0554 14687cd9533549845ac1900e94884c7c 377 SUPERFAMILY SSF48600 4 88 4.4E-23 T 10-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VF_0554 14687cd9533549845ac1900e94884c7c 377 Gene3D G3DSA:3.40.50.720 81 247 3.0E-43 T 10-10-2018 VF_0554 14687cd9533549845ac1900e94884c7c 377 Pfam PF02153 Prephenate dehydrogenase 132 344 1.8E-34 T 10-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 VF_0554 14687cd9533549845ac1900e94884c7c 377 SUPERFAMILY SSF48179 241 366 2.95E-41 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VF_0554 14687cd9533549845ac1900e94884c7c 377 SMART SM00830 9 89 1.4E-28 T 10-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VF_0554 14687cd9533549845ac1900e94884c7c 377 SUPERFAMILY SSF51735 91 237 4.33E-38 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0554 14687cd9533549845ac1900e94884c7c 377 Pfam PF01817 Chorismate mutase type II 9 86 2.8E-20 T 10-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VF_0554 14687cd9533549845ac1900e94884c7c 377 PIRSF PIRSF001499 1 374 1.4E-173 T 10-10-2018 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 VF_0554 14687cd9533549845ac1900e94884c7c 377 Gene3D G3DSA:1.20.59.10 1 80 1.7E-17 T 10-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VF_0554 14687cd9533549845ac1900e94884c7c 377 TIGRFAM TIGR01799 CM_T: chorismate mutase 5 87 1.9E-39 T 10-10-2018 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 Gene3D G3DSA:1.20.120.1320 41 142 1.3E-84 T 10-10-2018 VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 Pfam PF01842 ACT domain 324 380 7.1E-9 T 10-10-2018 IPR002912 ACT domain VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 SUPERFAMILY SSF55347 614 797 1.83E-50 T 10-10-2018 VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 Gene3D G3DSA:3.30.360.10 625 795 1.3E-117 T 10-10-2018 VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 Gene3D G3DSA:3.30.2130.10 302 464 1.3E-44 T 10-10-2018 VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 SUPERFAMILY SSF51735 463 636 4.82E-38 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 SUPERFAMILY SSF53633 1 298 9.49E-76 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 460 6.3E-130 T 10-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 SUPERFAMILY SSF55021 303 381 2.96E-22 T 10-10-2018 VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 SUPERFAMILY SSF55021 383 476 1.02E-20 T 10-10-2018 VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 660 682 - T 10-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 10-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 472 606 5.4E-26 T 10-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 Gene3D G3DSA:3.40.50.720 467 811 1.3E-117 T 10-10-2018 VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 PIRSF PIRSF000727 1 817 0.0 T 10-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 Gene3D G3DSA:3.40.1160.10 3 295 1.3E-84 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 Pfam PF00742 Homoserine dehydrogenase 614 810 6.7E-47 T 10-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 VF_2118 f5d9bd738ddd8d8650a3c1d19149faaf 819 Pfam PF00696 Amino acid kinase family 2 284 1.6E-48 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VF_0402 65b487c1c1b024815d1f7a545bc2069c 253 SUPERFAMILY SSF69593 2 249 1.14E-59 T 10-10-2018 VF_0402 65b487c1c1b024815d1f7a545bc2069c 253 SMART SM00563 78 193 1.9E-39 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VF_0402 65b487c1c1b024815d1f7a545bc2069c 253 Pfam PF01553 Acyltransferase 65 191 1.2E-30 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VF_0402 65b487c1c1b024815d1f7a545bc2069c 253 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 61 191 6.5E-45 T 10-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 VF_0311 57d21715717c835a433147f335926309 576 PRINTS PR00397 Sirohaem Fe-binding site signature 483 501 4.7E-9 T 10-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0311 57d21715717c835a433147f335926309 576 PRINTS PR00397 Sirohaem Fe-binding site signature 434 452 4.7E-9 T 10-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0311 57d21715717c835a433147f335926309 576 SUPERFAMILY SSF56014 153 348 1.7E-58 T 10-10-2018 VF_0311 57d21715717c835a433147f335926309 576 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 14 576 57.821 T 10-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0311 57d21715717c835a433147f335926309 576 SUPERFAMILY SSF55124 350 426 3.05E-20 T 10-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0311 57d21715717c835a433147f335926309 576 Gene3D G3DSA:3.30.413.10 145 352 4.6E-84 T 10-10-2018 VF_0311 57d21715717c835a433147f335926309 576 Gene3D G3DSA:3.90.480.20 20 414 4.6E-84 T 10-10-2018 VF_0311 57d21715717c835a433147f335926309 576 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 83 142 1.3E-14 T 10-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0311 57d21715717c835a433147f335926309 576 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 357 421 3.7E-13 T 10-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0311 57d21715717c835a433147f335926309 576 SUPERFAMILY SSF55124 18 149 1.23E-27 T 10-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0311 57d21715717c835a433147f335926309 576 Gene3D G3DSA:3.30.413.10 430 573 2.2E-34 T 10-10-2018 VF_0311 57d21715717c835a433147f335926309 576 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 483 499 - T 10-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0311 57d21715717c835a433147f335926309 576 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 435 557 6.0E-5 T 10-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0311 57d21715717c835a433147f335926309 576 SUPERFAMILY SSF56014 433 571 4.19E-33 T 10-10-2018 VF_0311 57d21715717c835a433147f335926309 576 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 177 334 6.2E-44 T 10-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_0311 57d21715717c835a433147f335926309 576 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 23 564 3.3E-280 T 10-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VF_B0049 976c4aa8677e8e14acdf938bfb5d4786 147 Pfam PF05713 Bacterial mobilisation protein (MobC) 99 141 5.5E-5 T 10-10-2018 IPR008687 Bacterial mobilisation VF_A0101 70b1f29c7e20da22064b18aa9fc8d931 327 SMART SM00450 195 314 7.4E-18 T 10-10-2018 IPR001763 Rhodanese-like domain VF_A0101 70b1f29c7e20da22064b18aa9fc8d931 327 SMART SM00450 53 169 2.3 T 10-10-2018 IPR001763 Rhodanese-like domain VF_A0101 70b1f29c7e20da22064b18aa9fc8d931 327 Gene3D G3DSA:3.40.250.10 36 189 9.6E-22 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_A0101 70b1f29c7e20da22064b18aa9fc8d931 327 Gene3D G3DSA:3.40.250.10 193 321 5.0E-31 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_A0101 70b1f29c7e20da22064b18aa9fc8d931 327 SUPERFAMILY SSF52821 45 184 2.1E-21 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_A0101 70b1f29c7e20da22064b18aa9fc8d931 327 Pfam PF00581 Rhodanese-like domain 200 309 6.8E-13 T 10-10-2018 IPR001763 Rhodanese-like domain VF_A0101 70b1f29c7e20da22064b18aa9fc8d931 327 Pfam PF00581 Rhodanese-like domain 69 164 5.2E-8 T 10-10-2018 IPR001763 Rhodanese-like domain VF_A0101 70b1f29c7e20da22064b18aa9fc8d931 327 SUPERFAMILY SSF52821 193 313 4.32E-27 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_A0101 70b1f29c7e20da22064b18aa9fc8d931 327 ProSitePatterns PS00683 Rhodanese C-terminal signature. 298 308 - T 10-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 VF_A0350 5f56b8403d47397b34b0a962fd71bd67 619 SMART SM00116 228 276 2.5 T 10-10-2018 IPR000644 CBS domain VF_A0350 5f56b8403d47397b34b0a962fd71bd67 619 SMART SM00116 162 211 0.063 T 10-10-2018 IPR000644 CBS domain VF_A0350 5f56b8403d47397b34b0a962fd71bd67 619 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 475 617 8.1E-44 T 10-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding VF_A0350 5f56b8403d47397b34b0a962fd71bd67 619 Pfam PF03445 Putative nucleotidyltransferase DUF294 302 435 1.8E-42 T 10-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 VF_A0350 5f56b8403d47397b34b0a962fd71bd67 619 SUPERFAMILY SSF54631 157 272 1.26E-23 T 10-10-2018 VF_A0350 5f56b8403d47397b34b0a962fd71bd67 619 SUPERFAMILY SSF51206 6 134 1.57E-14 T 10-10-2018 IPR018490 Cyclic nucleotide-binding-like VF_A0350 5f56b8403d47397b34b0a962fd71bd67 619 Pfam PF00571 CBS domain 162 209 1.2E-6 T 10-10-2018 IPR000644 CBS domain VF_A0350 5f56b8403d47397b34b0a962fd71bd67 619 Pfam PF00571 CBS domain 222 273 6.2E-7 T 10-10-2018 IPR000644 CBS domain VF_A0350 5f56b8403d47397b34b0a962fd71bd67 619 Gene3D G3DSA:3.10.580.10 147 282 2.3E-24 T 10-10-2018 VF_A0350 5f56b8403d47397b34b0a962fd71bd67 619 Gene3D G3DSA:2.60.120.10 8 145 1.1E-11 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_2372 abd8ebfe0fe6aeab2ee60bdbde18937f 610 SUPERFAMILY SSF56235 2 234 2.83E-75 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_2372 abd8ebfe0fe6aeab2ee60bdbde18937f 610 SUPERFAMILY SSF53697 245 610 2.69E-113 T 10-10-2018 VF_2372 abd8ebfe0fe6aeab2ee60bdbde18937f 610 Gene3D G3DSA:3.60.20.10 2 241 1.3E-80 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_2372 abd8ebfe0fe6aeab2ee60bdbde18937f 610 Pfam PF01380 SIS domain 463 592 5.4E-24 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VF_2372 abd8ebfe0fe6aeab2ee60bdbde18937f 610 Pfam PF01380 SIS domain 290 419 2.4E-32 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VF_2372 abd8ebfe0fe6aeab2ee60bdbde18937f 610 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 610 1.2E-257 T 10-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 VF_2372 abd8ebfe0fe6aeab2ee60bdbde18937f 610 Pfam PF13522 Glutamine amidotransferase domain 63 175 8.3E-21 T 10-10-2018 VF_2372 abd8ebfe0fe6aeab2ee60bdbde18937f 610 Gene3D G3DSA:3.40.50.10490 249 609 3.6E-145 T 10-10-2018 VF_2372 abd8ebfe0fe6aeab2ee60bdbde18937f 610 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 610 40.136 T 10-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 VF_2372 abd8ebfe0fe6aeab2ee60bdbde18937f 610 Gene3D G3DSA:3.40.50.10490 448 595 3.6E-145 T 10-10-2018 VF_A0119 6c500a861d1957fc25b2ac73753058d5 123 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 107 2.4E-19 T 10-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VF_A0119 6c500a861d1957fc25b2ac73753058d5 123 SUPERFAMILY SSF54593 1 110 2.28E-28 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_A0119 6c500a861d1957fc25b2ac73753058d5 123 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 109 4.4E-47 T 10-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 VF_A0119 6c500a861d1957fc25b2ac73753058d5 123 Gene3D G3DSA:3.10.180.10 1 116 2.2E-35 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_A0119 6c500a861d1957fc25b2ac73753058d5 123 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 10-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 VF_1669 0decc2d7d24868bf3c667d72ef098184 293 Pfam PF00378 Enoyl-CoA hydratase/isomerase 40 287 2.6E-78 T 10-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 VF_1669 0decc2d7d24868bf3c667d72ef098184 293 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 131 151 - T 10-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 VF_1669 0decc2d7d24868bf3c667d72ef098184 293 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 23 292 55.791 T 10-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 VF_1669 0decc2d7d24868bf3c667d72ef098184 293 TIGRFAM TIGR01929 menB: naphthoate synthase 30 289 4.1E-145 T 10-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 VF_1669 0decc2d7d24868bf3c667d72ef098184 293 Gene3D G3DSA:1.10.12.10 231 281 6.5E-31 T 10-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal VF_1669 0decc2d7d24868bf3c667d72ef098184 293 SUPERFAMILY SSF52096 24 289 6.69E-79 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VF_1669 0decc2d7d24868bf3c667d72ef098184 293 Gene3D G3DSA:3.90.226.10 8 230 2.1E-85 T 10-10-2018 VF_A0102 a1db61be54c1e3204f249852efb821c0 565 Gene3D G3DSA:3.40.190.10 92 212 3.8E-16 T 10-10-2018 VF_A0102 a1db61be54c1e3204f249852efb821c0 565 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 454 563 7.8E-15 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0102 a1db61be54c1e3204f249852efb821c0 565 Gene3D G3DSA:3.40.190.10 20 239 3.8E-16 T 10-10-2018 VF_A0102 a1db61be54c1e3204f249852efb821c0 565 Gene3D G3DSA:1.10.287.130 348 408 1.2E-15 T 10-10-2018 VF_A0102 a1db61be54c1e3204f249852efb821c0 565 SUPERFAMILY SSF47384 335 406 9.02E-8 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_A0102 a1db61be54c1e3204f249852efb821c0 565 SUPERFAMILY SSF55874 397 562 8.91E-29 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0102 a1db61be54c1e3204f249852efb821c0 565 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 561 3.6E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0102 a1db61be54c1e3204f249852efb821c0 565 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 542 3.6E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0102 a1db61be54c1e3204f249852efb821c0 565 PRINTS PR00344 Bacterial sensor protein C-terminal signature 496 510 3.6E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0102 a1db61be54c1e3204f249852efb821c0 565 SMART SM00388 342 411 0.0093 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0102 a1db61be54c1e3204f249852efb821c0 565 SMART SM00387 453 564 1.1E-17 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0102 a1db61be54c1e3204f249852efb821c0 565 SUPERFAMILY SSF53850 43 245 1.34E-14 T 10-10-2018 VF_A0102 a1db61be54c1e3204f249852efb821c0 565 Gene3D G3DSA:3.30.565.10 410 565 1.3E-29 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0102 a1db61be54c1e3204f249852efb821c0 565 Pfam PF00512 His Kinase A (phospho-acceptor) domain 344 405 4.5E-8 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0102 a1db61be54c1e3204f249852efb821c0 565 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 20 240 6.3E-31 T 10-10-2018 VF_A0441 f04200bd3040ec749437c19990957fe7 345 Pfam PF01757 Acyltransferase family 12 315 9.3E-20 T 10-10-2018 IPR002656 Acyltransferase 3 GO:0016747 VF_0094 9dd66a66b5adb612b70b8dbc4ffc5397 852 Gene3D G3DSA:1.20.1480.50 333 429 5.2E-8 T 10-10-2018 VF_0094 9dd66a66b5adb612b70b8dbc4ffc5397 852 Gene3D G3DSA:3.30.450.20 121 221 1.5E-14 T 10-10-2018 VF_0094 9dd66a66b5adb612b70b8dbc4ffc5397 852 Gene3D G3DSA:3.20.20.450 604 851 2.1E-87 T 10-10-2018 IPR035919 EAL domain superfamily VF_0094 9dd66a66b5adb612b70b8dbc4ffc5397 852 SUPERFAMILY SSF141868 607 850 2.35E-82 T 10-10-2018 IPR035919 EAL domain superfamily VF_0094 9dd66a66b5adb612b70b8dbc4ffc5397 852 SUPERFAMILY SSF158472 374 423 7.85E-7 T 10-10-2018 VF_0094 9dd66a66b5adb612b70b8dbc4ffc5397 852 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 430 587 1.1E-19 T 10-10-2018 IPR000160 GGDEF domain VF_0094 9dd66a66b5adb612b70b8dbc4ffc5397 852 Pfam PF00563 EAL domain 607 843 9.6E-70 T 10-10-2018 IPR001633 EAL domain VF_0094 9dd66a66b5adb612b70b8dbc4ffc5397 852 Pfam PF02743 Cache domain 129 335 2.5E-19 T 10-10-2018 IPR033479 Double Cache domain 1 VF_0094 9dd66a66b5adb612b70b8dbc4ffc5397 852 SUPERFAMILY SSF55073 436 587 4.32E-26 T 10-10-2018 IPR029787 Nucleotide cyclase VF_0094 9dd66a66b5adb612b70b8dbc4ffc5397 852 SMART SM00267 420 591 2.1E-23 T 10-10-2018 IPR000160 GGDEF domain VF_0094 9dd66a66b5adb612b70b8dbc4ffc5397 852 Gene3D G3DSA:3.30.70.270 430 603 1.2E-29 T 10-10-2018 VF_0094 9dd66a66b5adb612b70b8dbc4ffc5397 852 Pfam PF00990 Diguanylate cyclase, GGDEF domain 433 585 4.6E-24 T 10-10-2018 IPR000160 GGDEF domain VF_0094 9dd66a66b5adb612b70b8dbc4ffc5397 852 SMART SM00052 600 848 8.0E-106 T 10-10-2018 IPR001633 EAL domain VF_1568 5c908212a3e687f8e8a92ccbc57bcad0 314 Pfam PF00849 RNA pseudouridylate synthase 69 194 4.4E-14 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1568 5c908212a3e687f8e8a92ccbc57bcad0 314 SMART SM00363 9 66 1.8E-8 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_1568 5c908212a3e687f8e8a92ccbc57bcad0 314 SUPERFAMILY SSF55174 10 62 3.87E-13 T 10-10-2018 VF_1568 5c908212a3e687f8e8a92ccbc57bcad0 314 SUPERFAMILY SSF55120 65 229 3.45E-39 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1568 5c908212a3e687f8e8a92ccbc57bcad0 314 Gene3D G3DSA:3.30.70.580 71 229 1.8E-54 T 10-10-2018 VF_1568 5c908212a3e687f8e8a92ccbc57bcad0 314 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 225 7.3E-46 T 10-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 VF_1568 5c908212a3e687f8e8a92ccbc57bcad0 314 Pfam PF01479 S4 domain 10 54 4.7E-9 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_1568 5c908212a3e687f8e8a92ccbc57bcad0 314 Gene3D G3DSA:3.30.70.1560 134 207 1.8E-54 T 10-10-2018 VF_1568 5c908212a3e687f8e8a92ccbc57bcad0 314 Gene3D G3DSA:3.10.290.10 8 70 2.3E-20 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VF_1568 5c908212a3e687f8e8a92ccbc57bcad0 314 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 104 118 - T 10-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 VF_A0858 fac8810590aa1eb6b1e9574d6e4dbc75 350 Pfam PF01758 Sodium Bile acid symporter family 50 246 8.3E-60 T 10-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 VF_A0858 fac8810590aa1eb6b1e9574d6e4dbc75 350 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 5 334 7.6E-136 T 10-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 VF_A0858 fac8810590aa1eb6b1e9574d6e4dbc75 350 Gene3D G3DSA:1.20.1530.20 2 334 3.5E-22 T 10-10-2018 IPR038770 Sodium/solute symporter superfamily VF_A0858 fac8810590aa1eb6b1e9574d6e4dbc75 350 PIRSF PIRSF005508 1 348 7.7E-136 T 10-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 VF_0749 d62be7137aa479dfe172d87abe4375eb 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 27.992 T 10-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 VF_0749 d62be7137aa479dfe172d87abe4375eb 156 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 156 4.6E-77 T 10-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 VF_0749 d62be7137aa479dfe172d87abe4375eb 156 Pfam PF02590 Predicted SPOUT methyltransferase 1 154 1.2E-49 T 10-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 VF_0749 d62be7137aa479dfe172d87abe4375eb 156 PIRSF PIRSF004505 1 155 1.5E-44 T 10-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 VF_0749 d62be7137aa479dfe172d87abe4375eb 156 SUPERFAMILY SSF75217 1 154 1.2E-50 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases VF_0749 d62be7137aa479dfe172d87abe4375eb 156 Gene3D G3DSA:3.40.1280.10 1 156 3.9E-53 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VF_1513 f46464a784f2e1b73432e92ad366a5eb 456 PRINTS PR00173 Glutamate-aspartate symporter signature 27 47 2.2E-27 T 10-10-2018 VF_1513 f46464a784f2e1b73432e92ad366a5eb 456 PRINTS PR00173 Glutamate-aspartate symporter signature 181 203 2.2E-27 T 10-10-2018 VF_1513 f46464a784f2e1b73432e92ad366a5eb 456 PRINTS PR00173 Glutamate-aspartate symporter signature 75 95 2.2E-27 T 10-10-2018 VF_1513 f46464a784f2e1b73432e92ad366a5eb 456 PRINTS PR00173 Glutamate-aspartate symporter signature 259 278 2.2E-27 T 10-10-2018 VF_1513 f46464a784f2e1b73432e92ad366a5eb 456 PRINTS PR00173 Glutamate-aspartate symporter signature 105 130 2.2E-27 T 10-10-2018 VF_1513 f46464a784f2e1b73432e92ad366a5eb 456 PRINTS PR00173 Glutamate-aspartate symporter signature 395 415 2.2E-27 T 10-10-2018 VF_1513 f46464a784f2e1b73432e92ad366a5eb 456 PRINTS PR00173 Glutamate-aspartate symporter signature 368 387 2.2E-27 T 10-10-2018 VF_1513 f46464a784f2e1b73432e92ad366a5eb 456 Gene3D G3DSA:1.10.3860.10 19 455 4.1E-98 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VF_1513 f46464a784f2e1b73432e92ad366a5eb 456 SUPERFAMILY SSF118215 29 440 1.31E-91 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VF_1513 f46464a784f2e1b73432e92ad366a5eb 456 Pfam PF00375 Sodium:dicarboxylate symporter family 32 440 3.3E-97 T 10-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VF_A0214 56db7591db023548f5da4481f3014600 302 Gene3D G3DSA:3.40.190.10 103 291 1.2E-15 T 10-10-2018 VF_A0214 56db7591db023548f5da4481f3014600 302 Pfam PF03466 LysR substrate binding domain 92 297 3.3E-12 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0214 56db7591db023548f5da4481f3014600 302 Gene3D G3DSA:3.40.190.10 170 266 1.2E-15 T 10-10-2018 VF_A0214 56db7591db023548f5da4481f3014600 302 Gene3D G3DSA:1.10.10.10 1 85 2.4E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0214 56db7591db023548f5da4481f3014600 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 4.7E-13 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0214 56db7591db023548f5da4481f3014600 302 SUPERFAMILY SSF46785 3 83 3.27E-16 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0214 56db7591db023548f5da4481f3014600 302 SUPERFAMILY SSF53850 92 297 2.17E-18 T 10-10-2018 VF_A0214 56db7591db023548f5da4481f3014600 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 9.7E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0214 56db7591db023548f5da4481f3014600 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 9.7E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0214 56db7591db023548f5da4481f3014600 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 9.7E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 Pfam PF00175 Oxidoreductase NAD-binding domain 264 370 7.8E-15 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 183 195 5.2E-8 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 356 364 5.2E-8 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 263 282 5.2E-8 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 247 256 5.2E-8 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 Gene3D G3DSA:3.40.50.80 256 394 8.2E-32 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 SUPERFAMILY SSF63380 149 254 5.42E-29 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 SUPERFAMILY SSF46458 1 142 1.33E-37 T 10-10-2018 IPR009050 Globin-like superfamily VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 SUPERFAMILY SSF52343 254 392 7.07E-36 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 Pfam PF00970 Oxidoreductase FAD-binding domain 155 252 1.2E-12 T 10-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 Gene3D G3DSA:1.10.490.10 1 142 8.5E-50 T 10-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 Hamap MF_01252 Flavohemoprotein [hmp]. 1 394 56.287 T 10-10-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 Pfam PF00042 Globin 8 102 4.8E-13 T 10-10-2018 IPR000971 Globin GO:0020037 VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 183 193 1.5E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 356 364 1.5E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 263 282 1.5E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 204 211 1.5E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VF_2316 4200d51dd2e198cff5d6b871edb9708c 394 Gene3D G3DSA:2.40.30.10 149 253 6.1E-33 T 10-10-2018 VF_2078 fbafe65c39f6b43dd2875a99d9dc392b 273 Gene3D G3DSA:1.10.287.1080 140 272 1.0E-44 T 10-10-2018 VF_2078 fbafe65c39f6b43dd2875a99d9dc392b 273 TIGRFAM TIGR00444 mazG: MazG family protein 13 268 1.7E-98 T 10-10-2018 IPR011551 NTP pyrophosphohydrolase MazG VF_2078 fbafe65c39f6b43dd2875a99d9dc392b 273 SUPERFAMILY SSF101386 147 247 5.79E-25 T 10-10-2018 VF_2078 fbafe65c39f6b43dd2875a99d9dc392b 273 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 30 103 6.7E-29 T 10-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core VF_2078 fbafe65c39f6b43dd2875a99d9dc392b 273 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 178 237 9.6E-9 T 10-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core VF_2078 fbafe65c39f6b43dd2875a99d9dc392b 273 SUPERFAMILY SSF101386 4 105 6.83E-27 T 10-10-2018 VF_2078 fbafe65c39f6b43dd2875a99d9dc392b 273 Gene3D G3DSA:1.10.287.1080 3 127 9.3E-49 T 10-10-2018 VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 SUPERFAMILY SSF50447 259 390 5.18E-28 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 Gene3D G3DSA:3.40.50.300 107 272 4.9E-113 T 10-10-2018 VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 3 526 1.7E-298 T 10-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 Gene3D G3DSA:3.40.50.300 69 376 4.9E-113 T 10-10-2018 VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 SUPERFAMILY SSF54980 390 465 4.32E-17 T 10-10-2018 IPR035647 EF-G domain III/V-like VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 PRINTS PR00315 GTP-binding elongation factor signature 62 70 3.3E-10 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 PRINTS PR00315 GTP-binding elongation factor signature 134 143 3.3E-10 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 PRINTS PR00315 GTP-binding elongation factor signature 12 25 3.3E-10 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 PRINTS PR00315 GTP-binding elongation factor signature 82 92 3.3E-10 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 1 524 51.711 T 10-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 Pfam PF03144 Elongation factor Tu domain 2 311 377 9.1E-9 T 10-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 Pfam PF00009 Elongation factor Tu GTP binding domain 10 274 2.5E-45 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 150 3.4E-19 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 Gene3D G3DSA:3.30.70.3280 387 526 6.2E-52 T 10-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 SUPERFAMILY SSF52540 7 274 1.37E-84 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 55 70 - T 10-10-2018 IPR031157 Tr-type G domain, conserved site VF_0500 e71ca0c3ee9f2e13c845c1eb423131e7 526 Pfam PF16658 Class II release factor RF3, C-terminal domain 384 511 7.6E-46 T 10-10-2018 IPR032090 Peptide chain release factor 3, C-terminal VF_1997 ed6414e3094b0f687827c98e72aace5f 297 SUPERFAMILY SSF111331 11 293 1.03E-92 T 10-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily VF_1997 ed6414e3094b0f687827c98e72aace5f 297 Gene3D G3DSA:2.60.200.30 132 269 5.0E-91 T 10-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 VF_1997 ed6414e3094b0f687827c98e72aace5f 297 Hamap MF_00361 NAD kinase [nadK]. 9 292 33.247 T 10-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 VF_1997 ed6414e3094b0f687827c98e72aace5f 297 Gene3D G3DSA:3.40.50.10330 28 292 5.0E-91 T 10-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 VF_1997 ed6414e3094b0f687827c98e72aace5f 297 Pfam PF01513 ATP-NAD kinase 11 276 5.2E-70 T 10-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 VF_A0912 29b2b7f149d889232c601b49012d6898 259 Pfam PF00005 ABC transporter 45 182 4.2E-25 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0912 29b2b7f149d889232c601b49012d6898 259 SUPERFAMILY SSF52540 14 242 6.33E-44 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0912 29b2b7f149d889232c601b49012d6898 259 Gene3D G3DSA:3.40.50.300 23 256 3.7E-44 T 10-10-2018 VF_A0912 29b2b7f149d889232c601b49012d6898 259 SMART SM00382 54 232 3.9E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0649 e05763ad941808e47401fddb4793f2b9 290 Gene3D G3DSA:1.10.10.10 3 90 3.7E-26 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0649 e05763ad941808e47401fddb4793f2b9 290 Gene3D G3DSA:3.40.190.10 91 285 1.1E-66 T 10-10-2018 VF_0649 e05763ad941808e47401fddb4793f2b9 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 63 5.5E-16 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0649 e05763ad941808e47401fddb4793f2b9 290 Gene3D G3DSA:3.40.190.10 163 259 1.1E-66 T 10-10-2018 VF_0649 e05763ad941808e47401fddb4793f2b9 290 Pfam PF03466 LysR substrate binding domain 89 288 2.0E-44 T 10-10-2018 IPR005119 LysR, substrate-binding VF_0649 e05763ad941808e47401fddb4793f2b9 290 SUPERFAMILY SSF53850 90 289 2.35E-47 T 10-10-2018 VF_0649 e05763ad941808e47401fddb4793f2b9 290 SUPERFAMILY SSF46785 3 87 1.5E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1182 adaa9ae437e2d499daa679bfaf0c9407 344 SUPERFAMILY SSF111369 50 265 1.96E-32 T 10-10-2018 VF_1182 adaa9ae437e2d499daa679bfaf0c9407 344 Gene3D G3DSA:2.40.30.170 43 268 1.9E-74 T 10-10-2018 VF_1182 adaa9ae437e2d499daa679bfaf0c9407 344 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 338 6.4E-79 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VF_1182 adaa9ae437e2d499daa679bfaf0c9407 344 Gene3D G3DSA:2.40.420.20 37 335 1.9E-74 T 10-10-2018 VF_1182 adaa9ae437e2d499daa679bfaf0c9407 344 Gene3D G3DSA:2.40.50.100 58 190 1.9E-74 T 10-10-2018 VF_1182 adaa9ae437e2d499daa679bfaf0c9407 344 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 251 9.0E-12 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VF_1182 adaa9ae437e2d499daa679bfaf0c9407 344 Gene3D G3DSA:1.10.287.470 92 151 1.9E-74 T 10-10-2018 VF_0996 732eaedd632d13d3acdc713dec9aaa6a 163 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 11 137 3.3E-37 T 10-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN VF_0996 732eaedd632d13d3acdc713dec9aaa6a 163 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 3 142 2.6E-45 T 10-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN VF_0996 732eaedd632d13d3acdc713dec9aaa6a 163 Gene3D G3DSA:2.60.40.4150 17 155 1.2E-37 T 10-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily VF_A1068 4cc2503d7d4e0c91688e0ec46aabb1a5 245 Gene3D G3DSA:3.40.50.880 1 237 2.5E-56 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_A1068 4cc2503d7d4e0c91688e0ec46aabb1a5 245 Pfam PF03575 Peptidase family S51 3 209 2.1E-51 T 10-10-2018 IPR005320 Peptidase S51 GO:0006508|GO:0008236 VF_A1068 4cc2503d7d4e0c91688e0ec46aabb1a5 245 SUPERFAMILY SSF52317 1 210 1.26E-37 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 Gene3D G3DSA:1.20.1640.10 9 511 0.0 T 10-10-2018 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 SUPERFAMILY SSF82866 299 498 1.7E-51 T 10-10-2018 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 SUPERFAMILY SSF82714 184 274 2.62E-23 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 SUPERFAMILY SSF82714 721 805 2.22E-22 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 Gene3D G3DSA:3.30.70.1320 134 334 0.0 T 10-10-2018 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 Pfam PF00873 AcrB/AcrD/AcrF family 3 1026 0.0 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 SUPERFAMILY SSF82693 39 133 8.11E-23 T 10-10-2018 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 Gene3D G3DSA:3.30.70.1440 668 865 0.0 T 10-10-2018 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 SUPERFAMILY SSF82693 137 332 1.44E-21 T 10-10-2018 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 Gene3D G3DSA:3.30.2090.10 720 808 0.0 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1031 0.0 T 10-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 1.8E-86 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 1.8E-86 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 1.8E-86 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 1.8E-86 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 1.8E-86 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 1.8E-86 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 1.8E-86 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 1.8E-86 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 1.8E-86 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 SUPERFAMILY SSF82866 830 1025 1.07E-45 T 10-10-2018 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 SUPERFAMILY SSF82693 564 670 6.8E-24 T 10-10-2018 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 Gene3D G3DSA:3.30.70.1430 39 816 0.0 T 10-10-2018 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 Gene3D G3DSA:1.20.1640.10 512 1023 0.0 T 10-10-2018 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 Gene3D G3DSA:3.30.70.1430 566 667 0.0 T 10-10-2018 VF_A0907 b6b913e2bc09cfec080ca012ab808eca 1037 SUPERFAMILY SSF82693 671 856 1.7E-24 T 10-10-2018 VF_1094 3d63a98a3814ed46f0c6e86439a6e529 233 Gene3D G3DSA:3.40.50.150 23 231 7.4E-42 T 10-10-2018 VF_1094 3d63a98a3814ed46f0c6e86439a6e529 233 Pfam PF08241 Methyltransferase domain 44 138 3.0E-17 T 10-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 VF_1094 3d63a98a3814ed46f0c6e86439a6e529 233 SUPERFAMILY SSF53335 4 231 2.92E-34 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_0997 67dd47ad41f73ba68d7f23ec73be85b4 436 Pfam PF00498 FHA domain 29 97 4.5E-14 T 10-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 VF_0997 67dd47ad41f73ba68d7f23ec73be85b4 436 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 3 427 2.3E-81 T 10-10-2018 IPR017735 Type VI secretion system, FHA domain-containing protein VF_0997 67dd47ad41f73ba68d7f23ec73be85b4 436 Gene3D G3DSA:2.60.200.20 7 108 7.0E-18 T 10-10-2018 VF_0997 67dd47ad41f73ba68d7f23ec73be85b4 436 SMART SM00240 27 78 3.2E-5 T 10-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 VF_0997 67dd47ad41f73ba68d7f23ec73be85b4 436 SUPERFAMILY SSF49879 18 116 1.8E-20 T 10-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 VF_2076 579959f31d0061654d11dbb03deb545d 546 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 1.6E-258 T 10-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 VF_2076 579959f31d0061654d11dbb03deb545d 546 Hamap MF_01227 CTP synthase [pyrG]. 3 540 50.837 T 10-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 VF_2076 579959f31d0061654d11dbb03deb545d 546 SUPERFAMILY SSF52317 289 537 1.58E-86 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_2076 579959f31d0061654d11dbb03deb545d 546 Pfam PF00117 Glutamine amidotransferase class-I 301 535 1.1E-63 T 10-10-2018 IPR017926 Glutamine amidotransferase VF_2076 579959f31d0061654d11dbb03deb545d 546 Pfam PF06418 CTP synthase N-terminus 5 265 1.6E-124 T 10-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 VF_2076 579959f31d0061654d11dbb03deb545d 546 Gene3D G3DSA:3.40.50.300 1 285 4.2E-133 T 10-10-2018 VF_2076 579959f31d0061654d11dbb03deb545d 546 Gene3D G3DSA:3.40.50.880 287 542 1.9E-104 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_2076 579959f31d0061654d11dbb03deb545d 546 SUPERFAMILY SSF52540 3 269 1.06E-120 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1738 9712574d3b0daa0340835ecd075390bb 414 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 247 7.8E-62 T 10-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal VF_1738 9712574d3b0daa0340835ecd075390bb 414 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 10-10-2018 IPR018201 Beta-ketoacyl synthase, active site VF_1738 9712574d3b0daa0340835ecd075390bb 414 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 412 7.7E-188 T 10-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 VF_1738 9712574d3b0daa0340835ecd075390bb 414 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 370 4.9E-37 T 10-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal VF_1738 9712574d3b0daa0340835ecd075390bb 414 PIRSF PIRSF000447 1 414 6.8E-198 T 10-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 VF_1738 9712574d3b0daa0340835ecd075390bb 414 SMART SM00825 Beta-ketoacyl synthase 6 414 1.3E-15 T 10-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain VF_1738 9712574d3b0daa0340835ecd075390bb 414 Gene3D G3DSA:3.40.47.10 1 255 1.5E-91 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_1738 9712574d3b0daa0340835ecd075390bb 414 Gene3D G3DSA:3.40.47.10 261 414 8.4E-53 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_1738 9712574d3b0daa0340835ecd075390bb 414 SUPERFAMILY SSF53901 215 413 1.08E-68 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_1738 9712574d3b0daa0340835ecd075390bb 414 SUPERFAMILY SSF53901 4 252 2.28E-78 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 SMART SM01086 651 740 4.0E-37 T 10-10-2018 IPR019489 Clp ATPase, C-terminal VF_1765 05e445252c91d27c69b4ca88f02887ba 750 SMART SM00382 485 652 1.1E-6 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1765 05e445252c91d27c69b4ca88f02887ba 750 SMART SM00382 204 349 7.7E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1765 05e445252c91d27c69b4ca88f02887ba 750 SUPERFAMILY SSF81923 1 141 2.22E-57 T 10-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 Gene3D G3DSA:3.40.50.300 437 650 1.4E-76 T 10-10-2018 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 Gene3D G3DSA:1.10.8.60 651 750 2.1E-31 T 10-10-2018 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 1.6E-10 T 10-10-2018 IPR004176 Clp, N-terminal VF_1765 05e445252c91d27c69b4ca88f02887ba 750 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 732 0.0 T 10-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 560 578 5.3E-36 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 489 507 5.3E-36 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 593 607 5.3E-36 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 531 549 5.3E-36 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 300 312 - T 10-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 651 731 2.3E-24 T 10-10-2018 IPR019489 Clp ATPase, C-terminal VF_1765 05e445252c91d27c69b4ca88f02887ba 750 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 209 322 6.5E-12 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 Gene3D G3DSA:1.10.8.60 349 436 6.4E-35 T 10-10-2018 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 Gene3D G3DSA:3.40.50.300 154 348 1.7E-60 T 10-10-2018 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 Pfam PF07724 AAA domain (Cdc48 subfamily) 484 645 1.0E-47 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 Gene3D G3DSA:1.10.1780.10 1 142 1.5E-40 T 10-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 516 534 - T 10-10-2018 IPR028299 ClpA/B, conserved site 2 VF_1765 05e445252c91d27c69b4ca88f02887ba 750 SUPERFAMILY SSF52540 166 424 1.6E-64 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1765 05e445252c91d27c69b4ca88f02887ba 750 SUPERFAMILY SSF52540 435 740 2.62E-76 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0621 5c8e745b01a8394979313342d540646e 616 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 616 44.933 T 10-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 VF_0621 5c8e745b01a8394979313342d540646e 616 SUPERFAMILY SSF100920 383 535 9.94E-51 T 10-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 VF_0621 5c8e745b01a8394979313342d540646e 616 SUPERFAMILY SSF100934 503 615 1.16E-34 T 10-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 VF_0621 5c8e745b01a8394979313342d540646e 616 SUPERFAMILY SSF53067 18 195 5.18E-51 T 10-10-2018 VF_0621 5c8e745b01a8394979313342d540646e 616 Gene3D G3DSA:3.90.640.10 237 310 3.4E-111 T 10-10-2018 VF_0621 5c8e745b01a8394979313342d540646e 616 SUPERFAMILY SSF53067 199 376 4.37E-47 T 10-10-2018 VF_0621 5c8e745b01a8394979313342d540646e 616 Gene3D G3DSA:1.20.1270.10 519 615 1.0E-25 T 10-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 VF_0621 5c8e745b01a8394979313342d540646e 616 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 23 30 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VF_0621 5c8e745b01a8394979313342d540646e 616 Gene3D G3DSA:2.60.34.10 378 518 2.3E-49 T 10-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 VF_0621 5c8e745b01a8394979313342d540646e 616 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 20 615 3.0E-269 T 10-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 VF_0621 5c8e745b01a8394979313342d540646e 616 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 204 217 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VF_0621 5c8e745b01a8394979313342d540646e 616 Gene3D G3DSA:3.30.420.40 193 360 3.4E-111 T 10-10-2018 VF_0621 5c8e745b01a8394979313342d540646e 616 Gene3D G3DSA:3.30.420.40 21 373 3.4E-111 T 10-10-2018 VF_0621 5c8e745b01a8394979313342d540646e 616 Pfam PF00012 Hsp70 protein 20 600 1.9E-187 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_0621 5c8e745b01a8394979313342d540646e 616 PRINTS PR00301 70kDa heat shock protein signature 328 344 7.5E-54 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_0621 5c8e745b01a8394979313342d540646e 616 PRINTS PR00301 70kDa heat shock protein signature 210 220 7.5E-54 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_0621 5c8e745b01a8394979313342d540646e 616 PRINTS PR00301 70kDa heat shock protein signature 465 481 7.5E-54 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_0621 5c8e745b01a8394979313342d540646e 616 PRINTS PR00301 70kDa heat shock protein signature 359 379 7.5E-54 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_0621 5c8e745b01a8394979313342d540646e 616 PRINTS PR00301 70kDa heat shock protein signature 151 171 7.5E-54 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_0621 5c8e745b01a8394979313342d540646e 616 PRINTS PR00301 70kDa heat shock protein signature 19 32 7.5E-54 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_0621 5c8e745b01a8394979313342d540646e 616 PRINTS PR00301 70kDa heat shock protein signature 384 403 7.5E-54 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_0621 5c8e745b01a8394979313342d540646e 616 PRINTS PR00301 70kDa heat shock protein signature 47 59 7.5E-54 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1753 c158cf00a933dc173e023a22ccfa82c5 355 ProSitePatterns PS01215 Mrp family signature. 199 215 - T 10-10-2018 IPR000808 Mrp, conserved site GO:0005524 VF_1753 c158cf00a933dc173e023a22ccfa82c5 355 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 92 335 7.5E-99 T 10-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 VF_1753 c158cf00a933dc173e023a22ccfa82c5 355 Gene3D G3DSA:3.40.50.300 79 334 2.1E-79 T 10-10-2018 VF_1753 c158cf00a933dc173e023a22ccfa82c5 355 SUPERFAMILY SSF52540 94 341 1.73E-58 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1753 c158cf00a933dc173e023a22ccfa82c5 355 Hamap MF_02040 Iron-sulfur cluster carrier protein. 87 336 36.633 T 10-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein VF_2329 ca2ea8016b570b1b83cbc75f5b4429e7 181 Pfam PF00929 Exonuclease 9 170 1.5E-36 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_2329 ca2ea8016b570b1b83cbc75f5b4429e7 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 43.485 T 10-10-2018 IPR022894 Oligoribonuclease GO:0000175 VF_2329 ca2ea8016b570b1b83cbc75f5b4429e7 181 SUPERFAMILY SSF53098 3 179 1.16E-49 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_2329 ca2ea8016b570b1b83cbc75f5b4429e7 181 SMART SM00479 7 180 1.4E-19 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_2329 ca2ea8016b570b1b83cbc75f5b4429e7 181 Gene3D G3DSA:3.30.420.10 1 181 1.1E-74 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_A0922 ed429d7fb8934fe92a9d10debfb070da 307 SUPERFAMILY SSF53474 12 305 2.04E-24 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_A0922 ed429d7fb8934fe92a9d10debfb070da 307 Hamap MF_00774 Acyl transferase [luxD]. 1 305 59.983 T 10-10-2018 IPR003157 Acyl transferase, LuxD GO:0006631|GO:0016746 VF_A0922 ed429d7fb8934fe92a9d10debfb070da 307 PIRSF PIRSF009416 1 307 7.5E-162 T 10-10-2018 IPR003157 Acyl transferase, LuxD GO:0006631|GO:0016746 VF_A0922 ed429d7fb8934fe92a9d10debfb070da 307 Pfam PF02273 Acyl transferase 9 301 3.1E-157 T 10-10-2018 IPR003157 Acyl transferase, LuxD GO:0006631|GO:0016746 VF_A0922 ed429d7fb8934fe92a9d10debfb070da 307 Gene3D G3DSA:3.40.50.1820 5 307 1.1E-66 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_0625 02b587d19b64e896ca3074bd4caa0c5c 144 Pfam PF00334 Nucleoside diphosphate kinase 4 138 5.4E-56 T 10-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VF_0625 02b587d19b64e896ca3074bd4caa0c5c 144 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 2.1E-36 T 10-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VF_0625 02b587d19b64e896ca3074bd4caa0c5c 144 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 2.1E-36 T 10-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VF_0625 02b587d19b64e896ca3074bd4caa0c5c 144 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 2.1E-36 T 10-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VF_0625 02b587d19b64e896ca3074bd4caa0c5c 144 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 2.1E-36 T 10-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VF_0625 02b587d19b64e896ca3074bd4caa0c5c 144 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 2.1E-36 T 10-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VF_0625 02b587d19b64e896ca3074bd4caa0c5c 144 SMART SM00562 3 140 6.3E-86 T 10-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VF_0625 02b587d19b64e896ca3074bd4caa0c5c 144 Gene3D G3DSA:3.30.70.141 1 143 1.3E-57 T 10-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VF_0625 02b587d19b64e896ca3074bd4caa0c5c 144 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 35.207 T 10-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VF_0625 02b587d19b64e896ca3074bd4caa0c5c 144 SUPERFAMILY SSF54919 1 140 2.75E-59 T 10-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VF_1623 63487d6814e86800bf6f8528ad14c17c 727 Pfam PF13515 Fusaric acid resistance protein-like 407 526 6.9E-22 T 10-10-2018 VF_1623 63487d6814e86800bf6f8528ad14c17c 727 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 9 711 0.0 T 10-10-2018 IPR010019 Integral membrane protein, YccS VF_1623 63487d6814e86800bf6f8528ad14c17c 727 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 9 712 7.4E-241 T 10-10-2018 IPR010020 Integral membrane protein, YccS/YhfK VF_1623 63487d6814e86800bf6f8528ad14c17c 727 Pfam PF12805 FUSC-like inner membrane protein yccS 68 347 3.5E-108 T 10-10-2018 IPR032692 Integral membrane protein YccS, N-terminal VF_0757 75e71da1aa51a075f73f96413dc75148 153 SUPERFAMILY SSF55486 3 150 4.64E-50 T 10-10-2018 VF_0757 75e71da1aa51a075f73f96413dc75148 153 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 39 143 8.7E-38 T 10-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 VF_0757 75e71da1aa51a075f73f96413dc75148 153 Pfam PF02130 Uncharacterized protein family UPF0054 21 141 1.2E-38 T 10-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 VF_0757 75e71da1aa51a075f73f96413dc75148 153 Gene3D G3DSA:3.40.390.30 1 153 1.5E-60 T 10-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 VF_0757 75e71da1aa51a075f73f96413dc75148 153 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 113 123 - T 10-10-2018 IPR020549 Endoribonuclease YbeY, conserved site VF_0757 75e71da1aa51a075f73f96413dc75148 153 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 4 147 24.733 T 10-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 VF_1082 66d401540a5f90e66a7fd154894a8fd1 230 SUPERFAMILY SSF52833 1 78 2.46E-21 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1082 66d401540a5f90e66a7fd154894a8fd1 230 SUPERFAMILY SSF47616 83 198 2.18E-34 T 10-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VF_1082 66d401540a5f90e66a7fd154894a8fd1 230 Gene3D G3DSA:1.20.1050.10 82 224 1.3E-45 T 10-10-2018 VF_1082 66d401540a5f90e66a7fd154894a8fd1 230 Pfam PF13410 Glutathione S-transferase, C-terminal domain 120 185 1.5E-12 T 10-10-2018 VF_1082 66d401540a5f90e66a7fd154894a8fd1 230 Pfam PF02798 Glutathione S-transferase, N-terminal domain 7 73 2.6E-13 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VF_1082 66d401540a5f90e66a7fd154894a8fd1 230 Gene3D G3DSA:3.40.30.10 1 81 1.2E-26 T 10-10-2018 VF_A0833 5c21ab5ec1b5fd8371c4396638c7a4b3 260 SUPERFAMILY SSF46689 207 254 2.58E-11 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0833 5c21ab5ec1b5fd8371c4396638c7a4b3 260 Pfam PF12833 Helix-turn-helix domain 176 254 1.2E-21 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0833 5c21ab5ec1b5fd8371c4396638c7a4b3 260 Gene3D G3DSA:2.60.120.10 14 76 3.6E-9 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_A0833 5c21ab5ec1b5fd8371c4396638c7a4b3 260 Pfam PF07883 Cupin domain 17 67 6.0E-7 T 10-10-2018 IPR013096 Cupin 2, conserved barrel VF_A0833 5c21ab5ec1b5fd8371c4396638c7a4b3 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 237 253 4.3E-6 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_A0833 5c21ab5ec1b5fd8371c4396638c7a4b3 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 222 237 4.3E-6 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_A0833 5c21ab5ec1b5fd8371c4396638c7a4b3 260 SUPERFAMILY SSF46689 161 203 6.27E-7 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0833 5c21ab5ec1b5fd8371c4396638c7a4b3 260 SMART SM00342 170 253 1.4E-26 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0833 5c21ab5ec1b5fd8371c4396638c7a4b3 260 Gene3D G3DSA:1.10.10.60 157 257 8.7E-28 T 10-10-2018 VF_A0833 5c21ab5ec1b5fd8371c4396638c7a4b3 260 SUPERFAMILY SSF51182 9 77 2.92E-9 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_1885 cfef51378d7761b66712c023444c3b06 378 Pfam PF16538 Flagellar assembly protein T, C-terminal domain 298 374 1.4E-26 T 10-10-2018 IPR032388 Flagellar assembly protein T, C-terminal VF_1885 cfef51378d7761b66712c023444c3b06 378 Gene3D G3DSA:3.40.50.10610 113 289 2.6E-50 T 10-10-2018 VF_1885 cfef51378d7761b66712c023444c3b06 378 Gene3D G3DSA:2.40.10.410 290 378 1.5E-33 T 10-10-2018 IPR038165 FlgT, C-terminal domain superfamily VF_1885 cfef51378d7761b66712c023444c3b06 378 Pfam PF16539 Flagellar assembly protein T, middle domain 113 255 1.0E-40 T 10-10-2018 IPR032386 Flagellar assembly protein T, middle domain VF_1885 cfef51378d7761b66712c023444c3b06 378 Pfam PF16548 Flagellar assembly protein T, N-terminal domain 23 109 5.1E-24 T 10-10-2018 IPR032370 Flagellar assembly protein T, N-terminal VF_1885 cfef51378d7761b66712c023444c3b06 378 Gene3D G3DSA:3.30.1660.40 23 112 1.2E-31 T 10-10-2018 IPR038180 FlgT, N-terminal domain superfamily VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 PRINTS PR00701 60kDa inner membrane protein signature 215 233 2.6E-100 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 PRINTS PR00701 60kDa inner membrane protein signature 460 482 2.6E-100 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 PRINTS PR00701 60kDa inner membrane protein signature 322 342 2.6E-100 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 PRINTS PR00701 60kDa inner membrane protein signature 413 436 2.6E-100 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 PRINTS PR00701 60kDa inner membrane protein signature 2 23 2.6E-100 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 PRINTS PR00701 60kDa inner membrane protein signature 497 520 2.6E-100 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 PRINTS PR00701 60kDa inner membrane protein signature 73 94 2.6E-100 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 PRINTS PR00701 60kDa inner membrane protein signature 162 182 2.6E-100 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 PRINTS PR00701 60kDa inner membrane protein signature 250 265 2.6E-100 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 Gene3D G3DSA:2.70.98.90 63 331 1.8E-88 T 10-10-2018 IPR038221 YidC, periplasmic domain superfamily VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 351 531 8.7E-73 T 10-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 533 25.467 T 10-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 349 5.5E-115 T 10-10-2018 IPR028053 Membrane insertase YidC, N-terminal VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 PRINTS PR01900 YidC translocation/secretion protein signature 337 353 5.5E-25 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 PRINTS PR01900 YidC translocation/secretion protein signature 466 481 5.5E-25 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 PRINTS PR01900 YidC translocation/secretion protein signature 486 510 5.5E-25 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 Pfam PF14849 YidC periplasmic domain 68 341 3.1E-85 T 10-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain VF_0003 d1201e0a27df0e5436873edcd2040fb5 541 Pfam PF02096 60Kd inner membrane protein 352 531 8.6E-63 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VF_A0446 aa916f0e9103095d7db6a7e3285ffb0e 168 SUPERFAMILY SSF49503 57 167 3.46E-21 T 10-10-2018 IPR008972 Cupredoxin VF_A0446 aa916f0e9103095d7db6a7e3285ffb0e 168 Gene3D G3DSA:2.60.40.420 50 168 8.2E-19 T 10-10-2018 IPR008972 Cupredoxin VF_2564 4f2e3e6d61fe37f19b9e38cd941fdae6 467 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 467 2.7E-249 T 10-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 VF_2564 4f2e3e6d61fe37f19b9e38cd941fdae6 467 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 130 349 4.1E-60 T 10-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_2564 4f2e3e6d61fe37f19b9e38cd941fdae6 467 Gene3D G3DSA:3.40.50.300 76 351 8.0E-111 T 10-10-2018 VF_2564 4f2e3e6d61fe37f19b9e38cd941fdae6 467 Gene3D G3DSA:2.40.10.170 2 75 2.1E-28 T 10-10-2018 VF_2564 4f2e3e6d61fe37f19b9e38cd941fdae6 467 SUPERFAMILY SSF52540 77 355 2.16E-85 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2564 4f2e3e6d61fe37f19b9e38cd941fdae6 467 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 467 55.587 T 10-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 VF_2564 4f2e3e6d61fe37f19b9e38cd941fdae6 467 SUPERFAMILY SSF47917 352 466 3.4E-50 T 10-10-2018 VF_2564 4f2e3e6d61fe37f19b9e38cd941fdae6 467 SUPERFAMILY SSF50615 1 75 1.65E-24 T 10-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_2564 4f2e3e6d61fe37f19b9e38cd941fdae6 467 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 73 4.6E-20 T 10-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_2564 4f2e3e6d61fe37f19b9e38cd941fdae6 467 Gene3D G3DSA:1.10.1140.10 352 467 3.7E-53 T 10-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_2564 4f2e3e6d61fe37f19b9e38cd941fdae6 467 SMART SM00382 142 334 6.3E-4 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2564 4f2e3e6d61fe37f19b9e38cd941fdae6 467 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 340 349 - T 10-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_1544 aa915e6bf296ffb99803c2e8c42edb4f 224 SUPERFAMILY SSF48317 22 210 9.81E-27 T 10-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily VF_1544 aa915e6bf296ffb99803c2e8c42edb4f 224 Gene3D G3DSA:1.20.144.10 1 223 1.0E-46 T 10-10-2018 VF_1544 aa915e6bf296ffb99803c2e8c42edb4f 224 Pfam PF01569 PAP2 superfamily 63 211 2.3E-21 T 10-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VF_1544 aa915e6bf296ffb99803c2e8c42edb4f 224 SMART SM00014 61 209 1.7E-11 T 10-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VF_0617 b5d3119344711b291f666396232e019a 419 Gene3D G3DSA:3.90.1150.10 20 391 3.5E-168 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_0617 b5d3119344711b291f666396232e019a 419 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 16 419 7.1E-230 T 10-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 VF_0617 b5d3119344711b291f666396232e019a 419 PIRSF PIRSF005572 17 399 6.5E-138 T 10-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 VF_0617 b5d3119344711b291f666396232e019a 419 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 16 410 53.582 T 10-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 VF_0617 b5d3119344711b291f666396232e019a 419 SUPERFAMILY SSF53383 20 406 1.06E-115 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_0617 b5d3119344711b291f666396232e019a 419 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 212 231 - T 10-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site VF_0617 b5d3119344711b291f666396232e019a 419 Gene3D G3DSA:3.40.640.10 31 277 3.5E-168 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_0617 b5d3119344711b291f666396232e019a 419 Pfam PF00266 Aminotransferase class-V 20 382 2.4E-90 T 10-10-2018 IPR000192 Aminotransferase class V domain VF_A0695 333cce8946a962c26deeae2a03bd69ab 347 Gene3D G3DSA:3.20.20.70 1 345 5.5E-116 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A0695 333cce8946a962c26deeae2a03bd69ab 347 SUPERFAMILY SSF51412 6 336 3.14E-98 T 10-10-2018 VF_A0695 333cce8946a962c26deeae2a03bd69ab 347 PIRSF PIRSF000235 1 347 4.5E-195 T 10-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 VF_A0695 333cce8946a962c26deeae2a03bd69ab 347 SMART SM01240 7 344 5.9E-136 T 10-10-2018 VF_A0695 333cce8946a962c26deeae2a03bd69ab 347 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 338 3.3E-79 T 10-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 VF_A0695 333cce8946a962c26deeae2a03bd69ab 347 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 176 188 - T 10-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 VF_A0695 333cce8946a962c26deeae2a03bd69ab 347 Hamap MF_00596 GMP reductase [guaC]. 1 345 49.781 T 10-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 VF_A0695 333cce8946a962c26deeae2a03bd69ab 347 TIGRFAM TIGR01305 GMP_reduct_1: guanosine monophosphate reductase 2 344 1.8E-183 T 10-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 VF_0464 9d7afd9fddc3bd922fd67186bbfaeea9 60 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 59 1.5E-19 T 10-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0464 9d7afd9fddc3bd922fd67186bbfaeea9 60 SUPERFAMILY SSF46992 1 60 1.44E-21 T 10-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0464 9d7afd9fddc3bd922fd67186bbfaeea9 60 Pfam PF01649 Ribosomal protein S20 1 58 3.1E-17 T 10-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0464 9d7afd9fddc3bd922fd67186bbfaeea9 60 Gene3D G3DSA:1.20.58.110 1 60 6.1E-19 T 10-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0464 9d7afd9fddc3bd922fd67186bbfaeea9 60 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 1 60 2.0E-16 T 10-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_A0295 aef646b46c93ff901970390249419c11 172 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 4 172 7.9E-63 T 10-10-2018 IPR018636 Protein of unknown function DUF2058 VF_A0239 386313354c17b027aec86ae66ccab423 515 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 391 489 1.3E-10 T 10-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VF_A0239 386313354c17b027aec86ae66ccab423 515 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 19 36 - T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VF_A0239 386313354c17b027aec86ae66ccab423 515 Gene3D G3DSA:3.30.9.10 92 330 4.1E-140 T 10-10-2018 VF_A0239 386313354c17b027aec86ae66ccab423 515 Pfam PF01266 FAD dependent oxidoreductase 15 333 1.5E-50 T 10-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VF_A0239 386313354c17b027aec86ae66ccab423 515 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 323 329 6.3E-30 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VF_A0239 386313354c17b027aec86ae66ccab423 515 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 43 55 6.3E-30 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VF_A0239 386313354c17b027aec86ae66ccab423 515 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 88 100 6.3E-30 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VF_A0239 386313354c17b027aec86ae66ccab423 515 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 14 26 6.3E-30 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VF_A0239 386313354c17b027aec86ae66ccab423 515 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 27 37 6.3E-30 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VF_A0239 386313354c17b027aec86ae66ccab423 515 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 357 369 6.3E-30 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VF_A0239 386313354c17b027aec86ae66ccab423 515 Gene3D G3DSA:1.10.8.870 403 471 5.6E-16 T 10-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VF_A0239 386313354c17b027aec86ae66ccab423 515 SUPERFAMILY SSF51905 15 332 4.63E-30 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0239 386313354c17b027aec86ae66ccab423 515 SUPERFAMILY SSF54373 236 329 3.73E-7 T 10-10-2018 VF_A0239 386313354c17b027aec86ae66ccab423 515 Gene3D G3DSA:3.50.50.60 15 376 4.1E-140 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0061 d46e0ac77e6ebf5e0cf40c2937a91b78 465 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 6 341 3.7E-148 T 10-10-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197 VF_A0061 d46e0ac77e6ebf5e0cf40c2937a91b78 465 Pfam PF02378 Phosphotransferase system, EIIC 17 274 2.4E-21 T 10-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VF_A0061 d46e0ac77e6ebf5e0cf40c2937a91b78 465 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 377 457 1.3E-10 T 10-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VF_A0061 d46e0ac77e6ebf5e0cf40c2937a91b78 465 SUPERFAMILY SSF52794 377 460 1.31E-19 T 10-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VF_A0061 d46e0ac77e6ebf5e0cf40c2937a91b78 465 Gene3D G3DSA:3.40.50.2300 363 465 1.7E-30 T 10-10-2018 VF_A0289 fba2adffd63f50e3bf754a814c396413 501 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 13 490 4.9E-152 T 10-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 VF_A0289 fba2adffd63f50e3bf754a814c396413 501 SUPERFAMILY SSF52317 199 405 1.78E-33 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_A0289 fba2adffd63f50e3bf754a814c396413 501 Gene3D G3DSA:3.40.50.300 11 250 1.2E-56 T 10-10-2018 VF_A0289 fba2adffd63f50e3bf754a814c396413 501 Gene3D G3DSA:3.40.50.880 262 441 4.2E-17 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_A0289 fba2adffd63f50e3bf754a814c396413 501 SUPERFAMILY SSF52540 13 245 2.26E-57 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0289 fba2adffd63f50e3bf754a814c396413 501 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 13 238 3.9E-23 T 10-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain VF_A0289 fba2adffd63f50e3bf754a814c396413 501 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 497 189.453 T 10-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 VF_A0289 fba2adffd63f50e3bf754a814c396413 501 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 258 447 1.3E-55 T 10-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 VF_0787 f5a0a192e4f79ef984d3c02af178d62a 395 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0787 f5a0a192e4f79ef984d3c02af178d62a 395 Gene3D G3DSA:3.40.50.300 34 299 2.1E-81 T 10-10-2018 VF_0787 f5a0a192e4f79ef984d3c02af178d62a 395 Pfam PF00571 CBS domain 348 393 5.6E-6 T 10-10-2018 IPR000644 CBS domain VF_0787 f5a0a192e4f79ef984d3c02af178d62a 395 SUPERFAMILY SSF54631 274 392 6.19E-14 T 10-10-2018 VF_0787 f5a0a192e4f79ef984d3c02af178d62a 395 SUPERFAMILY SSF52540 43 271 2.42E-76 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0787 f5a0a192e4f79ef984d3c02af178d62a 395 Pfam PF00005 ABC transporter 45 192 2.3E-34 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0787 f5a0a192e4f79ef984d3c02af178d62a 395 Gene3D G3DSA:3.10.580.10 300 392 3.1E-6 T 10-10-2018 VF_0787 f5a0a192e4f79ef984d3c02af178d62a 395 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 36 393 7.2E-152 T 10-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 VF_0787 f5a0a192e4f79ef984d3c02af178d62a 395 SMART SM00382 53 242 8.5E-18 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0526 aed98cf271c174a9b5d2f5e14e1cdc99 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 221 1.8E-18 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_0526 aed98cf271c174a9b5d2f5e14e1cdc99 226 Pfam PF00072 Response regulator receiver domain 3 113 1.8E-25 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_0526 aed98cf271c174a9b5d2f5e14e1cdc99 226 SUPERFAMILY SSF52172 1 132 7.97E-33 T 10-10-2018 IPR011006 CheY-like superfamily VF_0526 aed98cf271c174a9b5d2f5e14e1cdc99 226 SMART SM00862 146 221 4.4E-17 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_0526 aed98cf271c174a9b5d2f5e14e1cdc99 226 SMART SM00448 1 113 5.0E-36 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_0526 aed98cf271c174a9b5d2f5e14e1cdc99 226 Gene3D G3DSA:1.10.10.10 119 222 1.3E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0526 aed98cf271c174a9b5d2f5e14e1cdc99 226 Gene3D G3DSA:3.40.50.2300 1 118 6.9E-35 T 10-10-2018 VF_0526 aed98cf271c174a9b5d2f5e14e1cdc99 226 SUPERFAMILY SSF46894 120 222 1.28E-22 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_1199 bef1931a2a7e78a66b764c4a1a1dd9c8 92 SUPERFAMILY SSF54292 3 82 1.57E-20 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VF_1199 bef1931a2a7e78a66b764c4a1a1dd9c8 92 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 74 4.2E-10 T 10-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VF_1199 bef1931a2a7e78a66b764c4a1a1dd9c8 92 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 35 43 - T 10-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 VF_1199 bef1931a2a7e78a66b764c4a1a1dd9c8 92 Gene3D G3DSA:3.10.20.30 2 91 1.0E-16 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_0245 072f625df4d76bc4b1239b51706db3a4 84 Gene3D G3DSA:2.40.50.140 1 83 3.2E-40 T 10-10-2018 VF_0245 072f625df4d76bc4b1239b51706db3a4 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 76 2.0E-39 T 10-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0245 072f625df4d76bc4b1239b51706db3a4 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 8.7E-39 T 10-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0245 072f625df4d76bc4b1239b51706db3a4 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 5 80 25.211 T 10-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0245 072f625df4d76bc4b1239b51706db3a4 84 Pfam PF00366 Ribosomal protein S17 10 76 1.4E-34 T 10-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0245 072f625df4d76bc4b1239b51706db3a4 84 SUPERFAMILY SSF50249 5 83 5.57E-35 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_0245 072f625df4d76bc4b1239b51706db3a4 84 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 9.0E-15 T 10-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0245 072f625df4d76bc4b1239b51706db3a4 84 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 9.0E-15 T 10-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0245 072f625df4d76bc4b1239b51706db3a4 84 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 9.0E-15 T 10-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0245 072f625df4d76bc4b1239b51706db3a4 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 10-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_A0740 8b1a676e8cd9463510e23d2e07a4c86e 89 SUPERFAMILY SSF57716 39 74 2.71E-7 T 10-10-2018 VF_A0740 8b1a676e8cd9463510e23d2e07a4c86e 89 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 38 69 8.6E-13 T 10-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 VF_A0740 8b1a676e8cd9463510e23d2e07a4c86e 89 Gene3D G3DSA:1.20.120.910 1 75 3.1E-19 T 10-10-2018 VF_2438 68ab8bfde7a7ed43141df0080eb100de 225 ProSitePatterns PS01081 TetR-type HTH domain signature. 50 80 - T 10-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VF_2438 68ab8bfde7a7ed43141df0080eb100de 225 Gene3D G3DSA:1.10.10.60 23 74 1.5E-23 T 10-10-2018 VF_2438 68ab8bfde7a7ed43141df0080eb100de 225 Pfam PF00440 Bacterial regulatory proteins, tetR family 37 80 9.8E-10 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_2438 68ab8bfde7a7ed43141df0080eb100de 225 SUPERFAMILY SSF46689 25 99 2.67E-14 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_2438 68ab8bfde7a7ed43141df0080eb100de 225 Gene3D G3DSA:1.10.357.10 75 224 4.2E-36 T 10-10-2018 VF_1492 3cb5b192827c99d1131fcbd353a08901 252 PIRSF PIRSF020736 1 252 1.2E-91 T 10-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 VF_1492 3cb5b192827c99d1131fcbd353a08901 252 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 6 248 5.1E-113 T 10-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 VF_1492 3cb5b192827c99d1131fcbd353a08901 252 Gene3D G3DSA:1.20.1260.10 89 252 4.7E-53 T 10-10-2018 IPR012347 Ferritin-like VF_1492 3cb5b192827c99d1131fcbd353a08901 252 Gene3D G3DSA:1.20.1260.10 3 79 1.7E-16 T 10-10-2018 IPR012347 Ferritin-like VF_1492 3cb5b192827c99d1131fcbd353a08901 252 SUPERFAMILY SSF47240 7 252 1.05E-74 T 10-10-2018 IPR009078 Ferritin-like superfamily VF_1794 5b60f0552d5a8b783e1c95fc5a1b1097 166 PIRSF PIRSF006272 1 166 5.9E-76 T 10-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU VF_1794 5b60f0552d5a8b783e1c95fc5a1b1097 166 Pfam PF03887 YfbU domain 1 166 9.3E-70 T 10-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU VF_1794 5b60f0552d5a8b783e1c95fc5a1b1097 166 SUPERFAMILY SSF116960 1 166 6.8E-62 T 10-10-2018 VF_1794 5b60f0552d5a8b783e1c95fc5a1b1097 166 Gene3D G3DSA:1.10.287.680 1 53 2.6E-29 T 10-10-2018 IPR023145 YfbU, helix-hairpin domain superfamily VF_1794 5b60f0552d5a8b783e1c95fc5a1b1097 166 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 1 166 1.0E-96 T 10-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU VF_1794 5b60f0552d5a8b783e1c95fc5a1b1097 166 Gene3D G3DSA:1.10.3190.10 54 166 1.4E-34 T 10-10-2018 IPR023146 YfbU, alpha-helical bundle domain superfamily VF_1794 5b60f0552d5a8b783e1c95fc5a1b1097 166 Hamap MF_00762 UPF0304 protein YfbU [yfbU]. 1 166 37.139 T 10-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU VF_1282 5812719930d74de6139d27d57d50c676 867 SUPERFAMILY SSF55486 203 449 1.15E-72 T 10-10-2018 VF_1282 5812719930d74de6139d27d57d50c676 867 Gene3D G3DSA:1.25.50.10 545 867 1.7E-112 T 10-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily VF_1282 5812719930d74de6139d27d57d50c676 867 Gene3D G3DSA:1.10.1740.60 194 278 3.0E-39 T 10-10-2018 VF_1282 5812719930d74de6139d27d57d50c676 867 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 12 866 0.0 T 10-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 VF_1282 5812719930d74de6139d27d57d50c676 867 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 547 867 3.8E-112 T 10-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal VF_1282 5812719930d74de6139d27d57d50c676 867 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 293 308 2.7E-9 T 10-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VF_1282 5812719930d74de6139d27d57d50c676 867 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 175 190 2.7E-9 T 10-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VF_1282 5812719930d74de6139d27d57d50c676 867 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 257 267 2.7E-9 T 10-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VF_1282 5812719930d74de6139d27d57d50c676 867 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 125 140 2.7E-9 T 10-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VF_1282 5812719930d74de6139d27d57d50c676 867 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 312 324 2.7E-9 T 10-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VF_1282 5812719930d74de6139d27d57d50c676 867 Pfam PF01433 Peptidase family M1 domain 207 438 7.4E-58 T 10-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VF_1282 5812719930d74de6139d27d57d50c676 867 Gene3D G3DSA:2.60.40.1840 443 544 5.6E-35 T 10-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily VF_1282 5812719930d74de6139d27d57d50c676 867 Gene3D G3DSA:1.10.390.10 279 442 1.3E-64 T 10-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily VF_1282 5812719930d74de6139d27d57d50c676 867 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 443 543 1.1E-32 T 10-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold VF_1282 5812719930d74de6139d27d57d50c676 867 Gene3D G3DSA:2.60.40.1730 15 193 1.4E-69 T 10-10-2018 VF_1282 5812719930d74de6139d27d57d50c676 867 SUPERFAMILY SSF63737 2 192 8.76E-45 T 10-10-2018 VF_1032 f4a1949b6e04a6505a402b67aba0230e 200 SUPERFAMILY SSF52317 3 192 9.66E-48 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_1032 f4a1949b6e04a6505a402b67aba0230e 200 Gene3D G3DSA:3.40.50.880 1 193 2.4E-57 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_1032 f4a1949b6e04a6505a402b67aba0230e 200 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 9.2E-14 T 10-10-2018 VF_1032 f4a1949b6e04a6505a402b67aba0230e 200 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 9.2E-14 T 10-10-2018 VF_1032 f4a1949b6e04a6505a402b67aba0230e 200 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 9.2E-14 T 10-10-2018 VF_1032 f4a1949b6e04a6505a402b67aba0230e 200 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 3 188 8.8E-51 T 10-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VF_1032 f4a1949b6e04a6505a402b67aba0230e 200 Pfam PF00117 Glutamine amidotransferase class-I 5 186 1.8E-44 T 10-10-2018 IPR017926 Glutamine amidotransferase VF_1032 f4a1949b6e04a6505a402b67aba0230e 200 PRINTS PR00097 Anthranilate synthase component II signature 166 179 5.9E-35 T 10-10-2018 VF_1032 f4a1949b6e04a6505a402b67aba0230e 200 PRINTS PR00097 Anthranilate synthase component II signature 52 61 5.9E-35 T 10-10-2018 VF_1032 f4a1949b6e04a6505a402b67aba0230e 200 PRINTS PR00097 Anthranilate synthase component II signature 79 90 5.9E-35 T 10-10-2018 VF_1032 f4a1949b6e04a6505a402b67aba0230e 200 PRINTS PR00097 Anthranilate synthase component II signature 124 136 5.9E-35 T 10-10-2018 VF_1032 f4a1949b6e04a6505a402b67aba0230e 200 PRINTS PR00097 Anthranilate synthase component II signature 4 18 5.9E-35 T 10-10-2018 VF_1032 f4a1949b6e04a6505a402b67aba0230e 200 PRINTS PR00097 Anthranilate synthase component II signature 104 112 5.9E-35 T 10-10-2018 VF_0234 b48f808812847be30857ad9825af0ffa 103 SUPERFAMILY SSF54999 5 101 5.89E-37 T 10-10-2018 IPR036838 Ribosomal protein S10 domain superfamily VF_0234 b48f808812847be30857ad9825af0ffa 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 2.3E-46 T 10-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0234 b48f808812847be30857ad9825af0ffa 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 10-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0234 b48f808812847be30857ad9825af0ffa 103 SMART SM01403 7 101 8.4E-57 T 10-10-2018 IPR027486 Ribosomal protein S10 domain VF_0234 b48f808812847be30857ad9825af0ffa 103 Gene3D G3DSA:3.30.70.600 1 103 2.5E-38 T 10-10-2018 IPR036838 Ribosomal protein S10 domain superfamily VF_0234 b48f808812847be30857ad9825af0ffa 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.304 T 10-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0234 b48f808812847be30857ad9825af0ffa 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 1.4E-35 T 10-10-2018 IPR027486 Ribosomal protein S10 domain VF_0234 b48f808812847be30857ad9825af0ffa 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.4E-18 T 10-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0234 b48f808812847be30857ad9825af0ffa 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.4E-18 T 10-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0234 b48f808812847be30857ad9825af0ffa 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.4E-18 T 10-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0888 d2f9c68265d5ea07485b9dff2e198ad7 400 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 80 5.6E-36 T 10-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VF_0888 d2f9c68265d5ea07485b9dff2e198ad7 400 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 395 57.648 T 10-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VF_0888 d2f9c68265d5ea07485b9dff2e198ad7 400 Gene3D G3DSA:3.40.50.720 1 398 2.2E-180 T 10-10-2018 VF_0888 d2f9c68265d5ea07485b9dff2e198ad7 400 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 317 4.5E-113 T 10-10-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VF_0888 d2f9c68265d5ea07485b9dff2e198ad7 400 Pfam PF07055 Enoyl reductase FAD binding domain 326 389 3.1E-31 T 10-10-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VF_2563 8e752da0ff265efe172d22ea04aca0de 140 SUPERFAMILY SSF46604 89 137 8.11E-14 T 10-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2563 8e752da0ff265efe172d22ea04aca0de 140 Gene3D G3DSA:2.60.15.10 4 91 1.5E-31 T 10-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2563 8e752da0ff265efe172d22ea04aca0de 140 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 89 134 4.6E-10 T 10-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain VF_2563 8e752da0ff265efe172d22ea04aca0de 140 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 134 1.7E-43 T 10-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2563 8e752da0ff265efe172d22ea04aca0de 140 SUPERFAMILY SSF51344 4 87 1.31E-24 T 10-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2563 8e752da0ff265efe172d22ea04aca0de 140 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 4 132 20.726 T 10-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2563 8e752da0ff265efe172d22ea04aca0de 140 Gene3D G3DSA:1.20.5.440 92 135 6.3E-18 T 10-10-2018 VF_2563 8e752da0ff265efe172d22ea04aca0de 140 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 85 1.0E-28 T 10-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2563 8e752da0ff265efe172d22ea04aca0de 140 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 11 91 4.0E-40 T 10-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_A1148 f282119ae45efc48d2099dd28c9f614c 320 SUPERFAMILY SSF46785 5 86 1.19E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A1148 f282119ae45efc48d2099dd28c9f614c 320 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.9E-19 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1148 f282119ae45efc48d2099dd28c9f614c 320 Pfam PF03466 LysR substrate binding domain 89 296 1.2E-32 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A1148 f282119ae45efc48d2099dd28c9f614c 320 SUPERFAMILY SSF53850 90 300 3.1E-33 T 10-10-2018 VF_A1148 f282119ae45efc48d2099dd28c9f614c 320 Gene3D G3DSA:1.10.10.10 3 89 4.0E-25 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1148 f282119ae45efc48d2099dd28c9f614c 320 Gene3D G3DSA:3.40.190.290 91 297 3.3E-45 T 10-10-2018 VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 Gene3D G3DSA:3.30.300.20 386 468 2.2E-19 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 157 5.7E-23 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 209 374 1.8E-24 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 386 465 7.9E-25 T 10-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 SUPERFAMILY SSF52540 4 172 2.35E-46 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 Pfam PF01926 50S ribosome-binding GTPase 213 330 2.4E-24 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 Pfam PF01926 50S ribosome-binding GTPase 5 119 1.1E-28 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 PIRSF PIRSF006485 1 474 5.4E-179 T 10-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 1.7E-10 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.7E-10 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 Hamap MF_00195 GTPase Der [der]. 2 469 38.985 T 10-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 Gene3D G3DSA:3.40.50.300 204 381 1.4E-48 T 10-10-2018 VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 SUPERFAMILY SSF52540 141 473 3.73E-61 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 466 4.0E-179 T 10-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 VF_0633 b7dca86e312d3baaeee9c1cedeca3666 500 Gene3D G3DSA:3.40.50.300 2 159 2.7E-44 T 10-10-2018 VF_0725 9677f0597be7a529b1802097c7b8bf36 465 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 21 465 1.0E-195 T 10-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 VF_0725 9677f0597be7a529b1802097c7b8bf36 465 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 20 275 5.1E-111 T 10-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 VF_0725 9677f0597be7a529b1802097c7b8bf36 465 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 20 465 45.406 T 10-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 VF_0725 9677f0597be7a529b1802097c7b8bf36 465 Pfam PF11973 NQRA C-terminal domain 280 329 9.8E-21 T 10-10-2018 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 VF_1013 888152145e8d0af0af00f0b115fd7239 439 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 33 423 1.3E-165 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VF_1013 888152145e8d0af0af00f0b115fd7239 439 PIRSF PIRSF000099 1 427 6.2E-169 T 10-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VF_1013 888152145e8d0af0af00f0b115fd7239 439 Pfam PF00815 Histidinol dehydrogenase 26 423 2.8E-170 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VF_1013 888152145e8d0af0af00f0b115fd7239 439 Gene3D G3DSA:3.40.50.1980 30 229 9.1E-126 T 10-10-2018 VF_1013 888152145e8d0af0af00f0b115fd7239 439 PRINTS PR00083 Histidinol dehydrogenase signature 227 248 8.5E-102 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VF_1013 888152145e8d0af0af00f0b115fd7239 439 PRINTS PR00083 Histidinol dehydrogenase signature 358 376 8.5E-102 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VF_1013 888152145e8d0af0af00f0b115fd7239 439 PRINTS PR00083 Histidinol dehydrogenase signature 165 191 8.5E-102 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VF_1013 888152145e8d0af0af00f0b115fd7239 439 PRINTS PR00083 Histidinol dehydrogenase signature 249 268 8.5E-102 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VF_1013 888152145e8d0af0af00f0b115fd7239 439 PRINTS PR00083 Histidinol dehydrogenase signature 195 220 8.5E-102 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VF_1013 888152145e8d0af0af00f0b115fd7239 439 PRINTS PR00083 Histidinol dehydrogenase signature 317 342 8.5E-102 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VF_1013 888152145e8d0af0af00f0b115fd7239 439 PRINTS PR00083 Histidinol dehydrogenase signature 33 57 8.5E-102 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VF_1013 888152145e8d0af0af00f0b115fd7239 439 PRINTS PR00083 Histidinol dehydrogenase signature 134 160 8.5E-102 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VF_1013 888152145e8d0af0af00f0b115fd7239 439 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 227 259 - T 10-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 VF_1013 888152145e8d0af0af00f0b115fd7239 439 SUPERFAMILY SSF53720 3 424 1.96E-93 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VF_1013 888152145e8d0af0af00f0b115fd7239 439 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 4 424 41.717 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VF_1013 888152145e8d0af0af00f0b115fd7239 439 Gene3D G3DSA:3.40.50.1980 231 346 9.1E-126 T 10-10-2018 VF_0693 4abf09f7783ff99652996898b1ab48ee 109 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 32 100 1.2E-13 T 10-10-2018 IPR018660 C-type lysozyme inhibitor VF_0693 4abf09f7783ff99652996898b1ab48ee 109 SUPERFAMILY SSF141488 28 106 2.35E-14 T 10-10-2018 IPR036328 C-type lysozyme inhibitor superfamily VF_0693 4abf09f7783ff99652996898b1ab48ee 109 Gene3D G3DSA:2.40.128.200 26 109 1.9E-16 T 10-10-2018 IPR036328 C-type lysozyme inhibitor superfamily VF_A1048 261bb8e1f0f576f2d6611bdc2e9973e0 309 Gene3D G3DSA:1.10.10.10 3 88 1.8E-22 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1048 261bb8e1f0f576f2d6611bdc2e9973e0 309 Pfam PF03466 LysR substrate binding domain 89 301 2.4E-39 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A1048 261bb8e1f0f576f2d6611bdc2e9973e0 309 SUPERFAMILY SSF53850 89 304 1.23E-35 T 10-10-2018 VF_A1048 261bb8e1f0f576f2d6611bdc2e9973e0 309 Gene3D G3DSA:3.40.190.10 163 272 3.3E-61 T 10-10-2018 VF_A1048 261bb8e1f0f576f2d6611bdc2e9973e0 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 2.3E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1048 261bb8e1f0f576f2d6611bdc2e9973e0 309 SUPERFAMILY SSF46785 4 112 2.67E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A1048 261bb8e1f0f576f2d6611bdc2e9973e0 309 Gene3D G3DSA:3.40.190.10 91 298 3.3E-61 T 10-10-2018 VF_2556 0809b430e033106303b620133ba43304 568 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 21 566 3.0E-209 T 10-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 VF_2556 0809b430e033106303b620133ba43304 568 Gene3D G3DSA:3.40.50.970 371 568 1.9E-65 T 10-10-2018 VF_2556 0809b430e033106303b620133ba43304 568 Gene3D G3DSA:3.40.50.970 13 196 1.1E-68 T 10-10-2018 VF_2556 0809b430e033106303b620133ba43304 568 Gene3D G3DSA:3.40.50.1220 202 370 5.2E-50 T 10-10-2018 VF_2556 0809b430e033106303b620133ba43304 568 SUPERFAMILY SSF52518 20 196 5.38E-63 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_2556 0809b430e033106303b620133ba43304 568 SUPERFAMILY SSF52518 378 565 1.12E-63 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_2556 0809b430e033106303b620133ba43304 568 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 207 342 2.1E-37 T 10-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 VF_2556 0809b430e033106303b620133ba43304 568 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 395 543 6.2E-49 T 10-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 VF_2556 0809b430e033106303b620133ba43304 568 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 21 187 5.4E-56 T 10-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 VF_2556 0809b430e033106303b620133ba43304 568 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 432 451 - T 10-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 VF_2556 0809b430e033106303b620133ba43304 568 SUPERFAMILY SSF52467 205 363 3.27E-53 T 10-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VF_2477 b3884ac6b5ba05021c7b17df3d1a3baa 291 Hamap MF_00117 33 kDa chaperonin [hslO]. 3 283 32.072 T 10-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 VF_2477 b3884ac6b5ba05021c7b17df3d1a3baa 291 SUPERFAMILY SSF64397 3 231 2.88E-77 T 10-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 VF_2477 b3884ac6b5ba05021c7b17df3d1a3baa 291 PIRSF PIRSF005261 1 284 2.7E-72 T 10-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 VF_2477 b3884ac6b5ba05021c7b17df3d1a3baa 291 Gene3D G3DSA:3.90.1280.10 225 284 6.9E-20 T 10-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 VF_2477 b3884ac6b5ba05021c7b17df3d1a3baa 291 Gene3D G3DSA:1.10.287.480 178 224 9.3E-23 T 10-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily VF_2477 b3884ac6b5ba05021c7b17df3d1a3baa 291 SUPERFAMILY SSF118352 224 281 1.09E-17 T 10-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 VF_2477 b3884ac6b5ba05021c7b17df3d1a3baa 291 Pfam PF01430 Hsp33 protein 5 272 3.9E-83 T 10-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 VF_2477 b3884ac6b5ba05021c7b17df3d1a3baa 291 Gene3D G3DSA:3.55.30.10 1 175 6.0E-66 T 10-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 VF_0551 327e7f8ca1c279c570d5d1fc4adbf56b 249 SUPERFAMILY SSF75217 1 245 1.44E-101 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases VF_0551 327e7f8ca1c279c570d5d1fc4adbf56b 249 Gene3D G3DSA:1.10.1270.20 166 249 6.2E-33 T 10-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VF_0551 327e7f8ca1c279c570d5d1fc4adbf56b 249 PIRSF PIRSF000386 1 249 1.2E-99 T 10-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VF_0551 327e7f8ca1c279c570d5d1fc4adbf56b 249 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 9.3E-70 T 10-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VF_0551 327e7f8ca1c279c570d5d1fc4adbf56b 249 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 249 117.637 T 10-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VF_0551 327e7f8ca1c279c570d5d1fc4adbf56b 249 Gene3D G3DSA:3.40.1280.10 1 165 1.4E-67 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VF_0551 327e7f8ca1c279c570d5d1fc4adbf56b 249 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 233 2.0E-106 T 10-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VF_1828 dd27c49b69d0d14c313d81e9f1d34965 352 PIRSF PIRSF020479 5 352 3.4E-93 T 10-10-2018 IPR014506 Uncharacterised conserved protein UCP020479, signal transduction CheW-like VF_1828 dd27c49b69d0d14c313d81e9f1d34965 352 Pfam PF01584 CheW-like domain 209 341 2.2E-12 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VF_1828 dd27c49b69d0d14c313d81e9f1d34965 352 SMART SM00260 205 339 7.9E-6 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VF_1828 dd27c49b69d0d14c313d81e9f1d34965 352 SUPERFAMILY SSF50341 205 341 5.75E-13 T 10-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VF_A0548 5eddac9a6df303207cd4fd18638377de 399 SUPERFAMILY SSF56349 106 388 1.34E-53 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VF_A0548 5eddac9a6df303207cd4fd18638377de 399 Gene3D G3DSA:1.10.443.10 216 389 3.3E-18 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VF_A0548 5eddac9a6df303207cd4fd18638377de 399 Pfam PF13356 Arm DNA-binding domain 8 90 6.6E-17 T 10-10-2018 IPR025166 Integrase, DNA-binding domain VF_A0548 5eddac9a6df303207cd4fd18638377de 399 Pfam PF00589 Phage integrase family 214 379 7.3E-21 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VF_A0548 5eddac9a6df303207cd4fd18638377de 399 Gene3D G3DSA:1.10.150.130 96 212 3.1E-28 T 10-10-2018 IPR010998 Integrase/recombinase, N-terminal VF_A0548 5eddac9a6df303207cd4fd18638377de 399 Gene3D G3DSA:3.30.160.390 6 95 4.3E-26 T 10-10-2018 IPR038488 Integrase, DNA-binding domain superfamily VF_1906 87f18142c122e1d6a9c4bec8e8305f17 94 Gene3D G3DSA:3.30.70.920 3 79 5.0E-22 T 10-10-2018 VF_1906 87f18142c122e1d6a9c4bec8e8305f17 94 Hamap MF_02200 Chaperone NapD [napD]. 10 86 18.231 T 10-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly VF_1906 87f18142c122e1d6a9c4bec8e8305f17 94 Pfam PF03927 NapD protein 10 84 1.4E-27 T 10-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly VF_A0830 4dab9ca356dd51178f133ef2d6750b10 235 SUPERFAMILY SSF53720 16 184 8.13E-15 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VF_A0830 4dab9ca356dd51178f133ef2d6750b10 235 Gene3D G3DSA:3.40.605.10 10 225 1.8E-11 T 10-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VF_A0830 4dab9ca356dd51178f133ef2d6750b10 235 Pfam PF00171 Aldehyde dehydrogenase family 48 190 2.5E-7 T 10-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VF_A0963 be5c887ab1692e41c9df56fbb1ef8238 310 SUPERFAMILY SSF53850 92 302 4.65E-31 T 10-10-2018 VF_A0963 be5c887ab1692e41c9df56fbb1ef8238 310 Pfam PF03466 LysR substrate binding domain 97 304 4.6E-15 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0963 be5c887ab1692e41c9df56fbb1ef8238 310 SUPERFAMILY SSF46785 6 88 1.22E-14 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0963 be5c887ab1692e41c9df56fbb1ef8238 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 1.0E-10 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0963 be5c887ab1692e41c9df56fbb1ef8238 310 Gene3D G3DSA:3.40.190.10 92 298 2.9E-37 T 10-10-2018 VF_A0963 be5c887ab1692e41c9df56fbb1ef8238 310 Gene3D G3DSA:1.10.10.10 3 90 2.4E-18 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0963 be5c887ab1692e41c9df56fbb1ef8238 310 Gene3D G3DSA:3.40.190.10 177 275 2.9E-37 T 10-10-2018 VF_2262 6f65c6313cf5c05939040d0a42bc72d0 164 SUPERFAMILY SSF55021 1 75 3.23E-21 T 10-10-2018 VF_2262 6f65c6313cf5c05939040d0a42bc72d0 164 Pfam PF13710 ACT domain 12 73 2.5E-17 T 10-10-2018 VF_2262 6f65c6313cf5c05939040d0a42bc72d0 164 SUPERFAMILY SSF55021 79 162 8.18E-27 T 10-10-2018 VF_2262 6f65c6313cf5c05939040d0a42bc72d0 164 Gene3D G3DSA:3.30.70.1150 80 157 2.3E-27 T 10-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal VF_2262 6f65c6313cf5c05939040d0a42bc72d0 164 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 75 2.0E-37 T 10-10-2018 VF_2262 6f65c6313cf5c05939040d0a42bc72d0 164 Gene3D G3DSA:3.30.70.260 1 79 8.2E-33 T 10-10-2018 VF_2262 6f65c6313cf5c05939040d0a42bc72d0 164 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 159 2.6E-62 T 10-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 VF_2262 6f65c6313cf5c05939040d0a42bc72d0 164 Pfam PF10369 Small subunit of acetolactate synthase 84 158 3.3E-25 T 10-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 VF_A0390 0a03c51df4a0d00ec8cc63493dd8a799 286 Gene3D G3DSA:1.10.3720.10 52 286 1.3E-51 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0390 0a03c51df4a0d00ec8cc63493dd8a799 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 283 1.6E-24 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_A0390 0a03c51df4a0d00ec8cc63493dd8a799 286 SUPERFAMILY SSF161098 58 276 4.58E-41 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0390 0a03c51df4a0d00ec8cc63493dd8a799 286 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 57 125 4.7E-15 T 10-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VF_2323 a2fa91be319cd464f26f4a2bae411eae 88 SUPERFAMILY SSF50182 7 69 1.62E-24 T 10-10-2018 IPR010920 LSM domain superfamily VF_2323 a2fa91be319cd464f26f4a2bae411eae 88 Pfam PF17209 Hfq protein 7 68 4.3E-31 T 10-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 VF_2323 a2fa91be319cd464f26f4a2bae411eae 88 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.727 T 10-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 VF_2323 a2fa91be319cd464f26f4a2bae411eae 88 Gene3D G3DSA:2.30.30.100 1 72 1.2E-34 T 10-10-2018 VF_2323 a2fa91be319cd464f26f4a2bae411eae 88 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 7.0E-30 T 10-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 VF_0972 4d06ba51057c901db7c4a73748945c1d 181 Pfam PF08281 Sigma-70, region 4 97 147 4.3E-11 T 10-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_0972 4d06ba51057c901db7c4a73748945c1d 181 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 7 152 1.0E-22 T 10-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VF_0972 4d06ba51057c901db7c4a73748945c1d 181 SUPERFAMILY SSF88659 92 151 3.92E-11 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_0972 4d06ba51057c901db7c4a73748945c1d 181 TIGRFAM TIGR02959 SigZ: RNA polymerase sigma factor, SigZ family 5 174 3.0E-74 T 10-10-2018 IPR014304 RNA polymerase sigma-Z type VF_0972 4d06ba51057c901db7c4a73748945c1d 181 Pfam PF04542 Sigma-70 region 2 6 69 7.3E-12 T 10-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VF_0972 4d06ba51057c901db7c4a73748945c1d 181 Gene3D G3DSA:1.10.10.10 88 154 1.9E-12 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0972 4d06ba51057c901db7c4a73748945c1d 181 Gene3D G3DSA:1.10.1740.10 2 71 2.2E-15 T 10-10-2018 VF_0972 4d06ba51057c901db7c4a73748945c1d 181 SUPERFAMILY SSF88946 6 88 5.89E-18 T 10-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VF_1609 8d6ce5202679390cbcf2d2c7d8140fe9 249 TIGRFAM TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB 8 247 8.9E-127 T 10-10-2018 IPR012730 Molybdopterin synthase sulfurylase MoeB GO:0006777 MetaCyc: PWY-6823 VF_1609 8d6ce5202679390cbcf2d2c7d8140fe9 249 SUPERFAMILY SSF69572 3 248 1.31E-87 T 10-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 VF_1609 8d6ce5202679390cbcf2d2c7d8140fe9 249 Pfam PF00899 ThiF family 12 244 3.6E-65 T 10-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 VF_1609 8d6ce5202679390cbcf2d2c7d8140fe9 249 Gene3D G3DSA:3.40.50.720 4 249 5.3E-88 T 10-10-2018 VF_0179 df3a06268705120939e2808a70529a52 310 Gene3D G3DSA:3.40.50.10490 2 192 1.0E-63 T 10-10-2018 VF_0179 df3a06268705120939e2808a70529a52 310 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 42 308 5.3E-99 T 10-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 VF_0179 df3a06268705120939e2808a70529a52 310 Pfam PF01380 SIS domain 40 168 6.9E-31 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VF_0179 df3a06268705120939e2808a70529a52 310 SUPERFAMILY SSF54631 258 308 9.18E-6 T 10-10-2018 VF_0179 df3a06268705120939e2808a70529a52 310 PIRSF PIRSF004692 1 310 6.1E-125 T 10-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 VF_0179 df3a06268705120939e2808a70529a52 310 Pfam PF00571 CBS domain 265 308 4.1E-6 T 10-10-2018 IPR000644 CBS domain VF_0179 df3a06268705120939e2808a70529a52 310 SUPERFAMILY SSF53697 5 276 3.56E-59 T 10-10-2018 VF_0179 df3a06268705120939e2808a70529a52 310 Gene3D G3DSA:3.10.580.10 193 310 6.7E-28 T 10-10-2018 VF_2488 af57da9cf33ee3da92bb3b6a00e76dc4 279 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 266 41.431 T 10-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 VF_2488 af57da9cf33ee3da92bb3b6a00e76dc4 279 Gene3D G3DSA:3.40.50.150 1 279 1.3E-115 T 10-10-2018 VF_2488 af57da9cf33ee3da92bb3b6a00e76dc4 279 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 277 1.8E-116 T 10-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 VF_2488 af57da9cf33ee3da92bb3b6a00e76dc4 279 SUPERFAMILY SSF53335 9 275 8.68E-96 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_2488 af57da9cf33ee3da92bb3b6a00e76dc4 279 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 241 247 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VF_A1122 6a77d6b4778a5d7733678a0093895f84 185 SUPERFAMILY SSF55729 21 150 6.38E-20 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A1122 6a77d6b4778a5d7733678a0093895f84 185 PIRSF PIRSF037663 26 176 2.4E-13 T 10-10-2018 IPR017255 Acetyltransferase, GNAT, predicted VF_A1122 6a77d6b4778a5d7733678a0093895f84 185 Pfam PF00583 Acetyltransferase (GNAT) family 61 145 4.8E-16 T 10-10-2018 IPR000182 GNAT domain VF_A1122 6a77d6b4778a5d7733678a0093895f84 185 TIGRFAM TIGR02406 ectoine_EctA: diaminobutyrate acetyltransferase 27 180 3.3E-60 T 10-10-2018 IPR012772 L-2,4-diaminobutyric acid acetyltransferase GO:0019491|GO:0033816 KEGG: 00260+2.3.1.178 VF_A1122 6a77d6b4778a5d7733678a0093895f84 185 Gene3D G3DSA:3.40.630.30 24 183 3.6E-43 T 10-10-2018 VF_0827 1c21c82292b1f452fcb63ed02cbd0091 551 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 366 515 5.7E-38 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0827 1c21c82292b1f452fcb63ed02cbd0091 551 Pfam PF17200 Single Cache domain 2 53 197 4.2E-23 T 10-10-2018 IPR033480 Single Cache domain 2 VF_0827 1c21c82292b1f452fcb63ed02cbd0091 551 SMART SM00283 289 550 1.7E-62 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0827 1c21c82292b1f452fcb63ed02cbd0091 551 SMART SM01049 47 142 4.4E-14 T 10-10-2018 IPR033480 Single Cache domain 2 VF_0827 1c21c82292b1f452fcb63ed02cbd0091 551 Gene3D G3DSA:1.10.287.950 231 551 6.9E-63 T 10-10-2018 VF_0827 1c21c82292b1f452fcb63ed02cbd0091 551 Gene3D G3DSA:3.30.450.20 48 197 6.5E-18 T 10-10-2018 VF_0827 1c21c82292b1f452fcb63ed02cbd0091 551 SUPERFAMILY SSF58104 268 551 6.54E-64 T 10-10-2018 VF_2153 88a61e6f09e327ffbc4c0b85371499c2 112 Gene3D G3DSA:3.30.70.120 1 112 1.7E-47 T 10-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VF_2153 88a61e6f09e327ffbc4c0b85371499c2 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 3.7E-44 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VF_2153 88a61e6f09e327ffbc4c0b85371499c2 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 10-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 VF_2153 88a61e6f09e327ffbc4c0b85371499c2 112 PIRSF PIRSF039144 1 112 1.3E-55 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VF_2153 88a61e6f09e327ffbc4c0b85371499c2 112 SUPERFAMILY SSF54913 1 112 1.59E-45 T 10-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta VF_2153 88a61e6f09e327ffbc4c0b85371499c2 112 PRINTS PR00340 P-II protein signature 52 75 4.5E-41 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VF_2153 88a61e6f09e327ffbc4c0b85371499c2 112 PRINTS PR00340 P-II protein signature 23 41 4.5E-41 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VF_2153 88a61e6f09e327ffbc4c0b85371499c2 112 PRINTS PR00340 P-II protein signature 2 17 4.5E-41 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VF_2153 88a61e6f09e327ffbc4c0b85371499c2 112 PRINTS PR00340 P-II protein signature 83 103 4.5E-41 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VF_2153 88a61e6f09e327ffbc4c0b85371499c2 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 10-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 VF_2153 88a61e6f09e327ffbc4c0b85371499c2 112 SMART SM00938 4 105 1.4E-69 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VF_2401 afc52f16134054c0784e90fc9c83ca20 176 Gene3D G3DSA:1.10.3680.10 26 166 1.9E-16 T 10-10-2018 IPR029024 TerB-like VF_2401 afc52f16134054c0784e90fc9c83ca20 176 SUPERFAMILY SSF158682 29 172 1.44E-24 T 10-10-2018 IPR029024 TerB-like VF_2401 afc52f16134054c0784e90fc9c83ca20 176 Pfam PF05099 Tellurite resistance protein TerB 32 170 1.1E-35 T 10-10-2018 IPR007791 Co-chaperone DjlA, N-terminal VF_2310 95184989a0a02a7e5cdf9f74cf07141e 149 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 25.552 T 10-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_2310 95184989a0a02a7e5cdf9f74cf07141e 149 SUPERFAMILY SSF55653 60 147 4.19E-25 T 10-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily VF_2310 95184989a0a02a7e5cdf9f74cf07141e 149 Gene3D G3DSA:3.10.430.100 61 148 4.6E-30 T 10-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily VF_2310 95184989a0a02a7e5cdf9f74cf07141e 149 SUPERFAMILY SSF55658 1 56 7.32E-19 T 10-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal VF_2310 95184989a0a02a7e5cdf9f74cf07141e 149 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 9.6E-22 T 10-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2310 95184989a0a02a7e5cdf9f74cf07141e 149 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 147 5.2E-55 T 10-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_2310 95184989a0a02a7e5cdf9f74cf07141e 149 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 10-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2310 95184989a0a02a7e5cdf9f74cf07141e 149 Gene3D G3DSA:3.40.5.10 1 50 6.6E-24 T 10-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2310 95184989a0a02a7e5cdf9f74cf07141e 149 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 147 5.4E-26 T 10-10-2018 IPR020069 Ribosomal protein L9, C-terminal VF_A0286 323dba02942fb80a8a3fff2fa245133a 477 Gene3D G3DSA:3.40.190.10 132 236 1.2E-42 T 10-10-2018 VF_A0286 323dba02942fb80a8a3fff2fa245133a 477 SMART SM00062 43 280 6.4E-15 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_A0286 323dba02942fb80a8a3fff2fa245133a 477 Gene3D G3DSA:1.10.530.10 296 470 1.4E-39 T 10-10-2018 VF_A0286 323dba02942fb80a8a3fff2fa245133a 477 Gene3D G3DSA:3.40.190.10 37 272 1.2E-42 T 10-10-2018 VF_A0286 323dba02942fb80a8a3fff2fa245133a 477 SUPERFAMILY SSF53955 297 457 2.08E-38 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_A0286 323dba02942fb80a8a3fff2fa245133a 477 Pfam PF01464 Transglycosylase SLT domain 301 416 1.1E-23 T 10-10-2018 IPR008258 Transglycosylase SLT domain 1 VF_A0286 323dba02942fb80a8a3fff2fa245133a 477 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 58 278 2.0E-18 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_A0286 323dba02942fb80a8a3fff2fa245133a 477 SUPERFAMILY SSF53850 43 279 4.49E-33 T 10-10-2018 VF_2081 54361a682fda8d122d232e6850f1d240 449 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 381 411 - T 10-10-2018 IPR030390 RNA methyltransferase TrmA, active site VF_2081 54361a682fda8d122d232e6850f1d240 449 Gene3D G3DSA:3.40.1350.30 146 282 5.0E-114 T 10-10-2018 VF_2081 54361a682fda8d122d232e6850f1d240 449 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 432 442 - T 10-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site VF_2081 54361a682fda8d122d232e6850f1d240 449 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 30 449 65.886 T 10-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 VF_2081 54361a682fda8d122d232e6850f1d240 449 Gene3D G3DSA:3.40.50.150 100 444 5.0E-114 T 10-10-2018 VF_2081 54361a682fda8d122d232e6850f1d240 449 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 36 442 3.0E-128 T 10-10-2018 VF_2081 54361a682fda8d122d232e6850f1d240 449 Gene3D G3DSA:2.40.50.140 12 99 1.4E-26 T 10-10-2018 VF_2081 54361a682fda8d122d232e6850f1d240 449 Pfam PF01938 TRAM domain 28 78 1.3E-6 T 10-10-2018 IPR002792 TRAM domain VF_2081 54361a682fda8d122d232e6850f1d240 449 SUPERFAMILY SSF53335 88 449 1.59E-82 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_2081 54361a682fda8d122d232e6850f1d240 449 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 109 448 4.0E-30 T 10-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 VF_2081 54361a682fda8d122d232e6850f1d240 449 SUPERFAMILY SSF50249 29 85 8.0E-13 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_0849 9e497dd5e8c07135e8e25f2d235ce6ed 467 Gene3D G3DSA:3.30.300.30 357 460 6.8E-15 T 10-10-2018 VF_0849 9e497dd5e8c07135e8e25f2d235ce6ed 467 Pfam PF00501 AMP-binding enzyme 25 295 4.3E-12 T 10-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VF_0849 9e497dd5e8c07135e8e25f2d235ce6ed 467 Pfam PF13193 AMP-binding enzyme C-terminal domain 369 452 9.2E-6 T 10-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VF_0849 9e497dd5e8c07135e8e25f2d235ce6ed 467 Gene3D G3DSA:3.40.50.12780 14 356 1.9E-18 T 10-10-2018 VF_0849 9e497dd5e8c07135e8e25f2d235ce6ed 467 SUPERFAMILY SSF56801 30 464 7.72E-52 T 10-10-2018 VF_1270 5d998697991ccae6ff783100e8d35f0c 254 Gene3D G3DSA:3.40.190.10 118 209 1.1E-59 T 10-10-2018 VF_1270 5d998697991ccae6ff783100e8d35f0c 254 Gene3D G3DSA:3.40.190.10 24 241 1.1E-59 T 10-10-2018 VF_1270 5d998697991ccae6ff783100e8d35f0c 254 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 54 67 - T 10-10-2018 IPR018313 Solute-binding protein family 3, conserved site VF_1270 5d998697991ccae6ff783100e8d35f0c 254 SMART SM00062 32 250 1.5E-31 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_1270 5d998697991ccae6ff783100e8d35f0c 254 SUPERFAMILY SSF53850 1 250 3.2E-51 T 10-10-2018 VF_1270 5d998697991ccae6ff783100e8d35f0c 254 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 33 250 4.2E-43 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_0629 f69f1acc3de8821d522d3aab132f064b 372 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 7 358 34.671 T 10-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 VF_0629 f69f1acc3de8821d522d3aab132f064b 372 Pfam PF04551 GcpE protein 14 354 2.5E-131 T 10-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 VF_0629 f69f1acc3de8821d522d3aab132f064b 372 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9 352 3.3E-124 T 10-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 VF_0629 f69f1acc3de8821d522d3aab132f064b 372 SUPERFAMILY SSF51717 15 207 1.73E-10 T 10-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0629 f69f1acc3de8821d522d3aab132f064b 372 Gene3D G3DSA:3.20.20.20 1 261 5.2E-104 T 10-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0629 f69f1acc3de8821d522d3aab132f064b 372 Gene3D G3DSA:3.30.413.10 262 361 5.3E-25 T 10-10-2018 VF_0629 f69f1acc3de8821d522d3aab132f064b 372 SUPERFAMILY SSF56014 265 354 1.07E-10 T 10-10-2018 VF_0629 f69f1acc3de8821d522d3aab132f064b 372 PIRSF PIRSF004640 1 364 3.9E-147 T 10-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 VF_A0258 113f489f2448620af27393b7dbc98270 500 SMART SM00530 17 79 2.3E-9 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_A0258 113f489f2448620af27393b7dbc98270 500 Pfam PF01381 Helix-turn-helix 18 79 6.2E-6 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_A0258 113f489f2448620af27393b7dbc98270 500 SUPERFAMILY SSF47413 12 86 5.35E-11 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_A0258 113f489f2448620af27393b7dbc98270 500 Gene3D G3DSA:1.10.260.40 11 94 4.3E-12 T 10-10-2018 VF_A0258 113f489f2448620af27393b7dbc98270 500 Pfam PF12268 Protein of unknown function (DUF3612) 326 500 4.7E-106 T 10-10-2018 IPR022055 Protein of unknown function DUF3612 VF_1380 d202b00d59ec25b94024e4730fd02cab 385 SUPERFAMILY SSF56601 32 370 1.94E-61 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VF_1380 d202b00d59ec25b94024e4730fd02cab 385 Gene3D G3DSA:3.40.710.10 32 381 1.4E-63 T 10-10-2018 VF_1380 d202b00d59ec25b94024e4730fd02cab 385 Pfam PF00144 Beta-lactamase 35 369 3.6E-42 T 10-10-2018 IPR001466 Beta-lactamase-related VF_1796 5295d9c9f548f7b05f9c96541f93b073 269 Gene3D G3DSA:3.40.50.150 1 269 1.0E-81 T 10-10-2018 VF_1796 5295d9c9f548f7b05f9c96541f93b073 269 Pfam PF13847 Methyltransferase domain 86 198 7.5E-16 T 10-10-2018 IPR025714 Methyltransferase domain VF_1796 5295d9c9f548f7b05f9c96541f93b073 269 SUPERFAMILY SSF53335 4 252 1.51E-44 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_1796 5295d9c9f548f7b05f9c96541f93b073 269 PIRSF PIRSF018249 1 269 3.7E-84 T 10-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 VF_1667 a0673443e468b8cb51d8da3f087fab56 324 Gene3D G3DSA:3.30.390.10 4 301 3.4E-120 T 10-10-2018 IPR029017 Enolase-like, N-terminal VF_1667 a0673443e468b8cb51d8da3f087fab56 324 Pfam PF13378 Enolase C-terminal domain-like 125 281 4.4E-13 T 10-10-2018 IPR029065 Enolase C-terminal domain-like VF_1667 a0673443e468b8cb51d8da3f087fab56 324 SUPERFAMILY SSF51604 103 313 9.3E-49 T 10-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily VF_1667 a0673443e468b8cb51d8da3f087fab56 324 SMART SM00922 116 211 3.3E-8 T 10-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal VF_1667 a0673443e468b8cb51d8da3f087fab56 324 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 4 322 22.122 T 10-10-2018 IPR010196 o-Succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 VF_1667 a0673443e468b8cb51d8da3f087fab56 324 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 7 307 2.9E-111 T 10-10-2018 VF_1667 a0673443e468b8cb51d8da3f087fab56 324 Gene3D G3DSA:3.20.20.120 99 296 3.4E-120 T 10-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily VF_1667 a0673443e468b8cb51d8da3f087fab56 324 SUPERFAMILY SSF54826 1 100 6.48E-25 T 10-10-2018 VF_0456 a219e941e290fd70fae3875246bb5b20 170 PRINTS PR00502 NUDIX hydrolase family signature 33 47 3.9E-8 T 10-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VF_0456 a219e941e290fd70fae3875246bb5b20 170 PRINTS PR00502 NUDIX hydrolase family signature 47 62 3.9E-8 T 10-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VF_0456 a219e941e290fd70fae3875246bb5b20 170 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 10-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VF_0456 a219e941e290fd70fae3875246bb5b20 170 Pfam PF00293 NUDIX domain 7 145 1.9E-28 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VF_0456 a219e941e290fd70fae3875246bb5b20 170 SUPERFAMILY SSF55811 7 154 4.87E-32 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VF_0456 a219e941e290fd70fae3875246bb5b20 170 Gene3D G3DSA:3.90.79.10 1 158 1.5E-50 T 10-10-2018 VF_0456 a219e941e290fd70fae3875246bb5b20 170 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.736 T 10-10-2018 IPR022927 RNA pyrophosphohydrolase RppH VF_A0475 d9aa2c10b15a8e59472a862d91e16618 563 Gene3D G3DSA:3.30.70.270 422 563 1.7E-25 T 10-10-2018 VF_A0475 d9aa2c10b15a8e59472a862d91e16618 563 SMART SM00267 405 563 2.4E-6 T 10-10-2018 IPR000160 GGDEF domain VF_A0475 d9aa2c10b15a8e59472a862d91e16618 563 SMART SM00052 2 223 2.7E-10 T 10-10-2018 IPR001633 EAL domain VF_A0475 d9aa2c10b15a8e59472a862d91e16618 563 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 424 560 9.8E-24 T 10-10-2018 IPR000160 GGDEF domain VF_A0475 d9aa2c10b15a8e59472a862d91e16618 563 SUPERFAMILY SSF55073 424 560 8.63E-24 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0475 d9aa2c10b15a8e59472a862d91e16618 563 SUPERFAMILY SSF141868 3 225 3.79E-38 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0475 d9aa2c10b15a8e59472a862d91e16618 563 Pfam PF00990 Diguanylate cyclase, GGDEF domain 424 560 1.1E-21 T 10-10-2018 IPR000160 GGDEF domain VF_A0475 d9aa2c10b15a8e59472a862d91e16618 563 Pfam PF00563 EAL domain 4 218 5.3E-30 T 10-10-2018 IPR001633 EAL domain VF_A0475 d9aa2c10b15a8e59472a862d91e16618 563 Gene3D G3DSA:3.20.20.450 2 228 3.7E-38 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0852 26357d4b323a94524a28c9a6bbd5fd96 384 Pfam PF00155 Aminotransferase class I and II 26 375 1.6E-33 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VF_A0852 26357d4b323a94524a28c9a6bbd5fd96 384 SUPERFAMILY SSF53383 3 381 3.09E-88 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_A0852 26357d4b323a94524a28c9a6bbd5fd96 384 Gene3D G3DSA:3.40.640.10 60 273 9.0E-110 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_A0852 26357d4b323a94524a28c9a6bbd5fd96 384 Gene3D G3DSA:3.90.1150.10 15 378 9.0E-110 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_0794 2a7aadc04016ceddd2e34f85cea1440b 322 Gene3D G3DSA:3.40.50.1400 6 318 3.3E-95 T 10-10-2018 VF_0794 2a7aadc04016ceddd2e34f85cea1440b 322 SUPERFAMILY SSF53800 3 319 2.45E-102 T 10-10-2018 VF_0794 2a7aadc04016ceddd2e34f85cea1440b 322 ProSitePatterns PS00534 Ferrochelatase signature. 188 208 - T 10-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 VF_0794 2a7aadc04016ceddd2e34f85cea1440b 322 TIGRFAM TIGR00109 hemH: ferrochelatase 2 318 1.4E-103 T 10-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 VF_0794 2a7aadc04016ceddd2e34f85cea1440b 322 Hamap MF_00323 Ferrochelatase [hemH]. 4 319 37.689 T 10-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 VF_0794 2a7aadc04016ceddd2e34f85cea1440b 322 Gene3D G3DSA:3.40.50.1400 162 300 3.3E-95 T 10-10-2018 VF_0794 2a7aadc04016ceddd2e34f85cea1440b 322 Pfam PF00762 Ferrochelatase 5 317 1.8E-109 T 10-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 VF_1118 4a43c21db9fa0bad6749003d74a11f7e 190 SMART SM01322 13 185 2.8E-104 T 10-10-2018 IPR009822 YaeQ VF_1118 4a43c21db9fa0bad6749003d74a11f7e 190 Gene3D G3DSA:3.10.640.10 10 190 1.2E-68 T 10-10-2018 IPR038590 YaeQ superfamily VF_1118 4a43c21db9fa0bad6749003d74a11f7e 190 SUPERFAMILY SSF52980 13 187 6.43E-67 T 10-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VF_1118 4a43c21db9fa0bad6749003d74a11f7e 190 PIRSF PIRSF011484 12 190 3.4E-68 T 10-10-2018 IPR009822 YaeQ VF_1118 4a43c21db9fa0bad6749003d74a11f7e 190 Pfam PF07152 YaeQ protein 13 183 2.3E-70 T 10-10-2018 IPR009822 YaeQ VF_1717 a882d468ca207dc41f68e6834c7c432f 297 Pfam PF00892 EamA-like transporter family 3 135 1.9E-24 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_1717 a882d468ca207dc41f68e6834c7c432f 297 Pfam PF00892 EamA-like transporter family 151 280 8.9E-21 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_1717 a882d468ca207dc41f68e6834c7c432f 297 SUPERFAMILY SSF103481 35 137 2.48E-14 T 10-10-2018 VF_1717 a882d468ca207dc41f68e6834c7c432f 297 SUPERFAMILY SSF103481 187 282 3.01E-12 T 10-10-2018 VF_1285 9202fac9dc010c4aaa0608409e661009 336 SUPERFAMILY SSF51395 1 335 7.99E-106 T 10-10-2018 VF_1285 9202fac9dc010c4aaa0608409e661009 336 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 10-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 VF_1285 9202fac9dc010c4aaa0608409e661009 336 Gene3D G3DSA:3.20.20.70 2 336 5.3E-141 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1285 9202fac9dc010c4aaa0608409e661009 336 Pfam PF01180 Dihydroorotate dehydrogenase 47 335 2.1E-89 T 10-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 VF_1285 9202fac9dc010c4aaa0608409e661009 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 336 51.171 T 10-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 VF_1285 9202fac9dc010c4aaa0608409e661009 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 336 2.2E-149 T 10-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 VF_1285 9202fac9dc010c4aaa0608409e661009 336 PIRSF PIRSF000164 10 336 9.8E-103 T 10-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 VF_1285 9202fac9dc010c4aaa0608409e661009 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 10-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 VF_2099 387be3b2d5f745ac70d0fd01983edd26 67 Pfam PF06526 Protein of unknown function (DUF1107) 1 63 1.1E-27 T 10-10-2018 IPR009491 Protein of unknown function DUF1107 VF_2099 387be3b2d5f745ac70d0fd01983edd26 67 Gene3D G3DSA:3.30.1910.10 1 64 4.5E-24 T 10-10-2018 VF_2099 387be3b2d5f745ac70d0fd01983edd26 67 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 63 5.0E-31 T 10-10-2018 IPR009491 Protein of unknown function DUF1107 VF_1031 4746e79d0b7c2bc82d4a53a7b5f8148b 335 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 9 332 1.7E-122 T 10-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 VF_1031 4746e79d0b7c2bc82d4a53a7b5f8148b 335 Pfam PF02885 Glycosyl transferase family, helical bundle domain 7 66 5.3E-13 T 10-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_1031 4746e79d0b7c2bc82d4a53a7b5f8148b 335 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 6 334 38.606 T 10-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 VF_1031 4746e79d0b7c2bc82d4a53a7b5f8148b 335 Pfam PF00591 Glycosyl transferase family, a/b domain 75 324 4.3E-102 T 10-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_1031 4746e79d0b7c2bc82d4a53a7b5f8148b 335 Gene3D G3DSA:3.40.1030.10 70 324 3.9E-117 T 10-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_1031 4746e79d0b7c2bc82d4a53a7b5f8148b 335 SUPERFAMILY SSF52418 73 331 2.75E-91 T 10-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_1031 4746e79d0b7c2bc82d4a53a7b5f8148b 335 Gene3D G3DSA:1.20.970.10 15 186 3.9E-117 T 10-10-2018 VF_1031 4746e79d0b7c2bc82d4a53a7b5f8148b 335 SUPERFAMILY SSF47648 5 70 6.41E-15 T 10-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_0237 bccaaccd1dfe739d93ce1ebce0c9c05b 200 Pfam PF00573 Ribosomal protein L4/L1 family 12 197 3.2E-65 T 10-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 VF_0237 bccaaccd1dfe739d93ce1ebce0c9c05b 200 SUPERFAMILY SSF52166 9 199 1.3E-73 T 10-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 VF_0237 bccaaccd1dfe739d93ce1ebce0c9c05b 200 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 6 200 33.953 T 10-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0237 bccaaccd1dfe739d93ce1ebce0c9c05b 200 Gene3D G3DSA:3.40.1370.10 5 200 4.6E-70 T 10-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 VF_0237 bccaaccd1dfe739d93ce1ebce0c9c05b 200 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 12 197 7.8E-76 T 10-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0454 a76e69c1a72ca7c6b45d35462fe14305 445 Gene3D G3DSA:1.10.8.60 310 385 7.9E-25 T 10-10-2018 VF_0454 a76e69c1a72ca7c6b45d35462fe14305 445 SMART SM00382 166 302 5.4E-4 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0454 a76e69c1a72ca7c6b45d35462fe14305 445 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 418 438 2.5E-5 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_0454 a76e69c1a72ca7c6b45d35462fe14305 445 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 401 418 2.5E-5 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_0454 a76e69c1a72ca7c6b45d35462fe14305 445 SUPERFAMILY SSF52172 26 190 6.36E-6 T 10-10-2018 IPR011006 CheY-like superfamily VF_0454 a76e69c1a72ca7c6b45d35462fe14305 445 Pfam PF00158 Sigma-54 interaction domain 146 305 4.3E-44 T 10-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VF_0454 a76e69c1a72ca7c6b45d35462fe14305 445 SUPERFAMILY SSF52540 146 379 4.81E-56 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0454 a76e69c1a72ca7c6b45d35462fe14305 445 Gene3D G3DSA:3.40.50.300 137 309 3.4E-48 T 10-10-2018 VF_0454 a76e69c1a72ca7c6b45d35462fe14305 445 Pfam PF02954 Bacterial regulatory protein, Fis family 395 434 5.9E-9 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VF_0454 a76e69c1a72ca7c6b45d35462fe14305 445 Gene3D G3DSA:1.10.10.60 386 439 1.5E-12 T 10-10-2018 VF_0454 a76e69c1a72ca7c6b45d35462fe14305 445 SUPERFAMILY SSF46689 351 437 2.51E-11 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_0454 a76e69c1a72ca7c6b45d35462fe14305 445 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 351 360 - T 10-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VF_0454 a76e69c1a72ca7c6b45d35462fe14305 445 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 10-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VF_0945 4bfbeec7bd3e5ba594ed61d17a1d3fdf 502 Pfam PF14400 Inactive transglutaminase fused to 7 transmembrane helices 25 184 3.0E-57 T 10-10-2018 IPR025838 Inactive transglutaminase fused to 7 transmembrane helices VF_0945 4bfbeec7bd3e5ba594ed61d17a1d3fdf 502 Pfam PF14402 7 transmembrane helices usually fused to an inactive transglutaminase 256 499 2.7E-109 T 10-10-2018 IPR025840 7 transmembrane helices usually fused to an inactive transglutaminase VF_0788 0ef806c6fdeeb5fb12d67f98b1ad1615 301 Pfam PF08338 Domain of unknown function (DUF1731) 253 299 3.1E-16 T 10-10-2018 IPR013549 Domain of unknown function DUF1731 VF_0788 0ef806c6fdeeb5fb12d67f98b1ad1615 301 SUPERFAMILY SSF51735 1 300 9.87E-42 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0788 0ef806c6fdeeb5fb12d67f98b1ad1615 301 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 226 3.0E-18 T 10-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 VF_0788 0ef806c6fdeeb5fb12d67f98b1ad1615 301 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 296 1.4E-101 T 10-10-2018 IPR010099 Epimerase family protein SDR39U1 VF_0788 0ef806c6fdeeb5fb12d67f98b1ad1615 301 Gene3D G3DSA:3.40.50.720 2 301 5.7E-72 T 10-10-2018 VF_2559 d484fb67abc0f97807cbefdf38f69aa0 613 SUPERFAMILY SSF143975 4 420 2.75E-134 T 10-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VF_2559 d484fb67abc0f97807cbefdf38f69aa0 613 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 10-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VF_2559 d484fb67abc0f97807cbefdf38f69aa0 613 Pfam PF00920 Dehydratase family 34 604 2.9E-217 T 10-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VF_2559 d484fb67abc0f97807cbefdf38f69aa0 613 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 607 44.624 T 10-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VF_2559 d484fb67abc0f97807cbefdf38f69aa0 613 Gene3D G3DSA:3.50.30.80 421 573 1.0E-54 T 10-10-2018 VF_2559 d484fb67abc0f97807cbefdf38f69aa0 613 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 10-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VF_2559 d484fb67abc0f97807cbefdf38f69aa0 613 SUPERFAMILY SSF52016 421 608 7.14E-60 T 10-10-2018 VF_2559 d484fb67abc0f97807cbefdf38f69aa0 613 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 607 1.6E-261 T 10-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VF_1093 35d5597f6061f772ac30fa81d7233150 366 Gene3D G3DSA:3.40.190.10 224 326 1.9E-20 T 10-10-2018 VF_1093 35d5597f6061f772ac30fa81d7233150 366 Pfam PF00060 Ligand-gated ion channel 142 252 6.0E-9 T 10-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 VF_1093 35d5597f6061f772ac30fa81d7233150 366 SMART SM00062 34 366 2.7E-8 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_1093 35d5597f6061f772ac30fa81d7233150 366 SUPERFAMILY SSF53850 19 364 1.45E-42 T 10-10-2018 VF_1093 35d5597f6061f772ac30fa81d7233150 366 Gene3D G3DSA:3.40.190.10 217 363 1.9E-20 T 10-10-2018 VF_1093 35d5597f6061f772ac30fa81d7233150 366 Gene3D G3DSA:3.40.190.10 31 146 2.7E-23 T 10-10-2018 VF_1093 35d5597f6061f772ac30fa81d7233150 366 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 364 7.5E-42 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_0574 58cd6624b079897b81f98e768c0eafd6 330 Gene3D G3DSA:3.40.190.10 194 292 2.2E-44 T 10-10-2018 VF_0574 58cd6624b079897b81f98e768c0eafd6 330 Gene3D G3DSA:3.40.190.10 119 316 2.2E-44 T 10-10-2018 VF_0574 58cd6624b079897b81f98e768c0eafd6 330 SUPERFAMILY SSF46785 26 104 3.95E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0574 58cd6624b079897b81f98e768c0eafd6 330 Pfam PF03466 LysR substrate binding domain 117 319 5.3E-21 T 10-10-2018 IPR005119 LysR, substrate-binding VF_0574 58cd6624b079897b81f98e768c0eafd6 330 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 31 88 4.5E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0574 58cd6624b079897b81f98e768c0eafd6 330 SUPERFAMILY SSF53850 113 319 4.16E-32 T 10-10-2018 VF_0574 58cd6624b079897b81f98e768c0eafd6 330 Gene3D G3DSA:1.10.10.10 21 110 2.5E-27 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0073 b3ec3f44a13bbceeb2d72edbe648e825 223 Hamap MF_02088 Probable queuosine precursor transporter. 7 213 15.462 T 10-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 VF_0073 b3ec3f44a13bbceeb2d72edbe648e825 223 Pfam PF02592 Putative vitamin uptake transporter 43 199 3.6E-37 T 10-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 VF_0073 b3ec3f44a13bbceeb2d72edbe648e825 223 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 14 205 3.8E-61 T 10-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 VF_A0281 ee370e5c29a5a027aa2f7249bd2a2cf6 706 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 115 705 5.6E-197 T 10-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 VF_A0281 ee370e5c29a5a027aa2f7249bd2a2cf6 706 SUPERFAMILY SSF51998 121 687 4.39E-190 T 10-10-2018 VF_A0281 ee370e5c29a5a027aa2f7249bd2a2cf6 706 Pfam PF03477 ATP cone domain 3 89 2.5E-16 T 10-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 VF_A0281 ee370e5c29a5a027aa2f7249bd2a2cf6 706 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 116 705 9.6E-179 T 10-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 VF_A0281 ee370e5c29a5a027aa2f7249bd2a2cf6 706 ProSitePatterns PS00850 Glycine radical domain signature. 676 684 - T 10-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site VF_A0281 ee370e5c29a5a027aa2f7249bd2a2cf6 706 Gene3D G3DSA:3.20.70.20 121 687 4.5E-231 T 10-10-2018 VF_1863 58b2981138a4d49bd754718c1638191b 375 Pfam PF07196 Flagellin hook IN motif 195 248 2.0E-11 T 10-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VF_1863 58b2981138a4d49bd754718c1638191b 375 Pfam PF00700 Bacterial flagellin C-terminal helical region 290 374 1.3E-24 T 10-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VF_1863 58b2981138a4d49bd754718c1638191b 375 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 8.2E-43 T 10-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VF_1863 58b2981138a4d49bd754718c1638191b 375 Gene3D G3DSA:1.10.8.410 326 374 6.3E-19 T 10-10-2018 VF_1863 58b2981138a4d49bd754718c1638191b 375 PRINTS PR00207 Flagellin signature 37 54 6.7E-27 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1863 58b2981138a4d49bd754718c1638191b 375 PRINTS PR00207 Flagellin signature 111 134 6.7E-27 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1863 58b2981138a4d49bd754718c1638191b 375 PRINTS PR00207 Flagellin signature 76 95 6.7E-27 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1863 58b2981138a4d49bd754718c1638191b 375 SUPERFAMILY SSF64518 1 374 1.1E-97 T 10-10-2018 VF_1863 58b2981138a4d49bd754718c1638191b 375 Gene3D G3DSA:1.20.1330.10 44 325 1.8E-77 T 10-10-2018 VF_1863 58b2981138a4d49bd754718c1638191b 375 Gene3D G3DSA:3.30.70.2120 174 273 1.8E-77 T 10-10-2018 VF_1938 ab97402f55012ab7aa0f3ece2f5a7032 252 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 2 252 46.025 T 10-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VF_1938 ab97402f55012ab7aa0f3ece2f5a7032 252 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 252 8.8E-108 T 10-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VF_1938 ab97402f55012ab7aa0f3ece2f5a7032 252 Pfam PF00753 Metallo-beta-lactamase superfamily 14 166 1.8E-20 T 10-10-2018 IPR001279 Metallo-beta-lactamase VF_1938 ab97402f55012ab7aa0f3ece2f5a7032 252 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 167 252 6.5E-27 T 10-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VF_1938 ab97402f55012ab7aa0f3ece2f5a7032 252 SMART SM00849 12 166 3.8E-35 T 10-10-2018 IPR001279 Metallo-beta-lactamase VF_1938 ab97402f55012ab7aa0f3ece2f5a7032 252 Gene3D G3DSA:3.60.15.10 1 252 7.1E-95 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VF_1938 ab97402f55012ab7aa0f3ece2f5a7032 252 SUPERFAMILY SSF56281 4 252 4.72E-72 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VF_1938 ab97402f55012ab7aa0f3ece2f5a7032 252 PIRSF PIRSF005457 1 252 1.1E-100 T 10-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VF_A0158 e32f49f5eaf7a229f6706db4bf543409 271 SUPERFAMILY SSF52540 22 246 6.72E-59 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0158 e32f49f5eaf7a229f6706db4bf543409 271 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0158 e32f49f5eaf7a229f6706db4bf543409 271 Gene3D G3DSA:3.40.50.300 14 270 3.9E-66 T 10-10-2018 VF_A0158 e32f49f5eaf7a229f6706db4bf543409 271 SMART SM00382 42 230 5.2E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0158 e32f49f5eaf7a229f6706db4bf543409 271 Pfam PF00005 ABC transporter 38 182 5.8E-31 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0121 07f4c1add27444051fd1f796269f947d 157 SUPERFAMILY SSF54534 80 156 1.01E-19 T 10-10-2018 VF_0121 07f4c1add27444051fd1f796269f947d 157 SUPERFAMILY SSF46557 3 78 1.26E-27 T 10-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 VF_0121 07f4c1add27444051fd1f796269f947d 157 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 154 28.387 T 10-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 VF_0121 07f4c1add27444051fd1f796269f947d 157 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 156 53.073 T 10-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 VF_0121 07f4c1add27444051fd1f796269f947d 157 PIRSF PIRSF006092 1 157 1.4E-44 T 10-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 VF_0121 07f4c1add27444051fd1f796269f947d 157 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 119 135 - T 10-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 VF_0121 07f4c1add27444051fd1f796269f947d 157 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 10-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 VF_0121 07f4c1add27444051fd1f796269f947d 157 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 155 2.6E-21 T 10-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 VF_0121 07f4c1add27444051fd1f796269f947d 157 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 7.9E-26 T 10-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 VF_0121 07f4c1add27444051fd1f796269f947d 157 Gene3D G3DSA:3.10.50.30 77 157 1.4E-30 T 10-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 VF_0121 07f4c1add27444051fd1f796269f947d 157 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 2 155 4.3E-78 T 10-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 VF_0121 07f4c1add27444051fd1f796269f947d 157 Gene3D G3DSA:1.10.287.180 1 76 5.6E-32 T 10-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 Gene3D G3DSA:2.70.98.10 733 1004 1.0E-81 T 10-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 SUPERFAMILY SSF49785 2 206 2.55E-61 T 10-10-2018 IPR008979 Galactose-binding-like domain superfamily VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 Gene3D G3DSA:2.60.40.10 209 319 1.9E-25 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 Gene3D G3DSA:3.20.20.80 320 600 1.5E-101 T 10-10-2018 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 371 396 - T 10-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 SUPERFAMILY SSF74650 718 1000 1.73E-83 T 10-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 SMART SM01038 728 999 3.5E-120 T 10-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 321 605 1.7E-115 T 10-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 Pfam PF02929 Beta galactosidase small chain 731 998 7.7E-68 T 10-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 Gene3D G3DSA:2.60.120.260 1 208 3.9E-73 T 10-10-2018 IPR008979 Galactose-binding-like domain superfamily VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 SUPERFAMILY SSF49303 608 705 2.37E-19 T 10-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 44 204 1.6E-46 T 10-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 PRINTS PR00132 Glycosyl hydrolase family 2 signature 507 522 9.3E-32 T 10-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 PRINTS PR00132 Glycosyl hydrolase family 2 signature 330 344 9.3E-32 T 10-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 PRINTS PR00132 Glycosyl hydrolase family 2 signature 135 150 9.3E-32 T 10-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 PRINTS PR00132 Glycosyl hydrolase family 2 signature 436 451 9.3E-32 T 10-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 PRINTS PR00132 Glycosyl hydrolase family 2 signature 361 379 9.3E-32 T 10-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 Gene3D G3DSA:2.60.40.10 601 703 1.3E-15 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 Pfam PF00703 Glycosyl hydrolases family 2 209 319 1.3E-17 T 10-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 436 450 - T 10-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 SUPERFAMILY SSF51445 321 599 2.11E-84 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 SUPERFAMILY SSF49303 209 319 4.89E-24 T 10-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VF_A0347 15f25b0a834d29760a646bc70225f4ca 1033 Pfam PF16353 Domain of unknown function(DUF4981) 615 700 2.2E-12 T 10-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VF_0528 2fa12c601da351af466d34480493e76a 460 Gene3D G3DSA:3.40.50.300 68 281 4.8E-39 T 10-10-2018 VF_0528 2fa12c601da351af466d34480493e76a 460 Hamap MF_01498 DNA repair protein RadA [radA]. 21 458 42.93 T 10-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 VF_0528 2fa12c601da351af466d34480493e76a 460 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 454 1.9E-224 T 10-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 VF_0528 2fa12c601da351af466d34480493e76a 460 SUPERFAMILY SSF54211 258 457 4.17E-43 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_0528 2fa12c601da351af466d34480493e76a 460 Gene3D G3DSA:3.30.230.10 313 459 4.2E-22 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_0528 2fa12c601da351af466d34480493e76a 460 Pfam PF13541 Subunit ChlI of Mg-chelatase 348 433 1.9E-10 T 10-10-2018 VF_0528 2fa12c601da351af466d34480493e76a 460 Pfam PF13481 AAA domain 86 225 5.6E-14 T 10-10-2018 VF_0528 2fa12c601da351af466d34480493e76a 460 SMART SM00382 94 247 1.9E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0528 2fa12c601da351af466d34480493e76a 460 PRINTS PR01874 DNA repair protein radA signature 216 244 7.8E-94 T 10-10-2018 VF_0528 2fa12c601da351af466d34480493e76a 460 PRINTS PR01874 DNA repair protein radA signature 177 201 7.8E-94 T 10-10-2018 VF_0528 2fa12c601da351af466d34480493e76a 460 PRINTS PR01874 DNA repair protein radA signature 127 144 7.8E-94 T 10-10-2018 VF_0528 2fa12c601da351af466d34480493e76a 460 PRINTS PR01874 DNA repair protein radA signature 251 277 7.8E-94 T 10-10-2018 VF_0528 2fa12c601da351af466d34480493e76a 460 PRINTS PR01874 DNA repair protein radA signature 10 34 7.8E-94 T 10-10-2018 VF_0528 2fa12c601da351af466d34480493e76a 460 PRINTS PR01874 DNA repair protein radA signature 86 114 7.8E-94 T 10-10-2018 VF_0528 2fa12c601da351af466d34480493e76a 460 PRINTS PR01874 DNA repair protein radA signature 325 348 7.8E-94 T 10-10-2018 VF_0528 2fa12c601da351af466d34480493e76a 460 SUPERFAMILY SSF52540 71 295 1.75E-47 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0909 6d2f612389baf11ebf676467e875877a 144 Gene3D G3DSA:3.40.30.10 41 143 5.4E-31 T 10-10-2018 VF_0909 6d2f612389baf11ebf676467e875877a 144 PRINTS PR00421 Thioredoxin family signature 58 66 3.0E-7 T 10-10-2018 VF_0909 6d2f612389baf11ebf676467e875877a 144 PRINTS PR00421 Thioredoxin family signature 106 117 3.0E-7 T 10-10-2018 VF_0909 6d2f612389baf11ebf676467e875877a 144 PRINTS PR00421 Thioredoxin family signature 66 75 3.0E-7 T 10-10-2018 VF_0909 6d2f612389baf11ebf676467e875877a 144 Pfam PF00085 Thioredoxin 50 140 1.7E-25 T 10-10-2018 IPR013766 Thioredoxin domain GO:0045454 VF_0909 6d2f612389baf11ebf676467e875877a 144 Gene3D G3DSA:2.20.28.140 2 37 2.1E-14 T 10-10-2018 VF_0909 6d2f612389baf11ebf676467e875877a 144 SUPERFAMILY SSF52833 28 142 2.73E-36 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_0909 6d2f612389baf11ebf676467e875877a 144 PIRSF PIRSF000077 41 142 1.1E-31 T 10-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 VF_0909 6d2f612389baf11ebf676467e875877a 144 TIGRFAM TIGR01068 thioredoxin: thioredoxin 50 141 3.7E-35 T 10-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 VF_A1126 820d14ecb0ffc3ac13048c73b3a5aa64 296 SUPERFAMILY SSF46689 240 292 3.9E-8 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A1126 820d14ecb0ffc3ac13048c73b3a5aa64 296 Gene3D G3DSA:1.10.10.60 190 236 5.3E-12 T 10-10-2018 VF_A1126 820d14ecb0ffc3ac13048c73b3a5aa64 296 Gene3D G3DSA:1.10.10.60 237 292 6.6E-11 T 10-10-2018 VF_A1126 820d14ecb0ffc3ac13048c73b3a5aa64 296 SUPERFAMILY SSF46689 188 233 9.86E-6 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A1126 820d14ecb0ffc3ac13048c73b3a5aa64 296 Pfam PF12833 Helix-turn-helix domain 211 289 1.4E-18 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A1126 820d14ecb0ffc3ac13048c73b3a5aa64 296 SMART SM00342 204 288 1.2E-20 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_1931 b696aba70b5106979b94e9e2203c427f 193 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 2 191 37.559 T 10-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 VF_1931 b696aba70b5106979b94e9e2203c427f 193 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 36 188 3.6E-81 T 10-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 VF_1931 b696aba70b5106979b94e9e2203c427f 193 Pfam PF13580 SIS domain 25 147 5.2E-32 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VF_1931 b696aba70b5106979b94e9e2203c427f 193 Gene3D G3DSA:3.40.50.10490 2 192 5.8E-71 T 10-10-2018 VF_1931 b696aba70b5106979b94e9e2203c427f 193 SUPERFAMILY SSF53697 3 190 4.25E-51 T 10-10-2018 VF_0491 4c15882bff5dad25b3bcf00d290c477b 327 PIRSF PIRSF004654 2 297 4.7E-82 T 10-10-2018 IPR023605 Lipoprotein NlpI VF_0491 4c15882bff5dad25b3bcf00d290c477b 327 SUPERFAMILY SSF48452 32 284 2.61E-62 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0491 4c15882bff5dad25b3bcf00d290c477b 327 SMART SM00028 98 131 0.0018 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0491 4c15882bff5dad25b3bcf00d290c477b 327 SMART SM00028 236 269 190.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0491 4c15882bff5dad25b3bcf00d290c477b 327 SMART SM00028 64 97 0.071 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0491 4c15882bff5dad25b3bcf00d290c477b 327 Pfam PF13181 Tetratricopeptide repeat 64 96 0.033 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0491 4c15882bff5dad25b3bcf00d290c477b 327 Pfam PF13181 Tetratricopeptide repeat 100 131 0.083 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0491 4c15882bff5dad25b3bcf00d290c477b 327 Gene3D G3DSA:1.25.40.10 27 299 3.7E-72 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_2320 4c6c82c0b58f1486c529bf9f25927b55 294 SMART SM00244 18 188 3.2E-41 T 10-10-2018 IPR001107 Band 7 domain VF_2320 4c6c82c0b58f1486c529bf9f25927b55 294 TIGRFAM TIGR01932 hflC: HflC protein 1 150 8.4E-62 T 10-10-2018 IPR010200 HflC GO:0016021|GO:0052547 VF_2320 4c6c82c0b58f1486c529bf9f25927b55 294 TIGRFAM TIGR01932 hflC: HflC protein 144 288 6.6E-59 T 10-10-2018 IPR010200 HflC GO:0016021|GO:0052547 VF_2320 4c6c82c0b58f1486c529bf9f25927b55 294 Gene3D G3DSA:3.30.479.30 53 202 8.6E-20 T 10-10-2018 VF_2320 4c6c82c0b58f1486c529bf9f25927b55 294 SUPERFAMILY SSF117892 56 194 1.2E-28 T 10-10-2018 IPR036013 Band 7/SPFH domain superfamily VF_2320 4c6c82c0b58f1486c529bf9f25927b55 294 PIRSF PIRSF005651 1 293 1.9E-94 T 10-10-2018 IPR010200 HflC GO:0016021|GO:0052547 VF_2320 4c6c82c0b58f1486c529bf9f25927b55 294 Pfam PF01145 SPFH domain / Band 7 family 22 203 6.3E-34 T 10-10-2018 IPR001107 Band 7 domain VF_A0403 59584ddc02784b93b0f2e651272283a0 220 SUPERFAMILY SSF116726 135 215 4.58E-14 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_A0403 59584ddc02784b93b0f2e651272283a0 220 Pfam PF02254 TrkA-N domain 8 123 2.9E-28 T 10-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VF_A0403 59584ddc02784b93b0f2e651272283a0 220 Gene3D G3DSA:3.30.70.1450 141 216 2.5E-13 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_A0403 59584ddc02784b93b0f2e651272283a0 220 Gene3D G3DSA:3.40.50.720 1 140 5.5E-35 T 10-10-2018 VF_A0403 59584ddc02784b93b0f2e651272283a0 220 SUPERFAMILY SSF51735 6 136 3.5E-36 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A1017 84dab3e124d153f8895835c7e881924f 572 SMART SM00448 17 133 9.1E-7 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A1017 84dab3e124d153f8895835c7e881924f 572 Gene3D G3DSA:3.40.50.2300 10 145 1.6E-18 T 10-10-2018 VF_A1017 84dab3e124d153f8895835c7e881924f 572 Pfam PF00072 Response regulator receiver domain 19 133 2.1E-15 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A1017 84dab3e124d153f8895835c7e881924f 572 SUPERFAMILY SSF52172 16 187 3.7E-22 T 10-10-2018 IPR011006 CheY-like superfamily VF_0666 dba0aba511f9ddfe96a2f947ff78b77f 245 Gene3D G3DSA:3.20.20.70 8 237 4.1E-85 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0666 dba0aba511f9ddfe96a2f947ff78b77f 245 Hamap MF_01235 Putative N-acetylmannosamine-6-phosphate 2-epimerase [nanE]. 20 234 36.488 T 10-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 VF_0666 dba0aba511f9ddfe96a2f947ff78b77f 245 SUPERFAMILY SSF51366 22 231 9.42E-55 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VF_0666 dba0aba511f9ddfe96a2f947ff78b77f 245 Pfam PF04131 Putative N-acetylmannosamine-6-phosphate epimerase 44 233 2.9E-82 T 10-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 VF_A0955 c4799db8b3215220d1389fc52dc0da82 216 Gene3D G3DSA:3.40.50.150 2 164 3.7E-45 T 10-10-2018 VF_A0955 c4799db8b3215220d1389fc52dc0da82 216 PIRSF PIRSF028234 1 214 3.7E-75 T 10-10-2018 IPR016876 Uncharacterised conserved protein UCP028234 VF_A0955 c4799db8b3215220d1389fc52dc0da82 216 SUPERFAMILY SSF53335 17 143 1.57E-8 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_A0955 c4799db8b3215220d1389fc52dc0da82 216 Pfam PF12847 Methyltransferase domain 3 158 2.8E-27 T 10-10-2018 VF_A0256 fce286059f690c61a05bde9f6cdec8b3 124 Gene3D G3DSA:3.90.1150.30 5 124 1.5E-36 T 10-10-2018 IPR038056 YjbR-like superfamily VF_A0256 fce286059f690c61a05bde9f6cdec8b3 124 SUPERFAMILY SSF142906 10 122 2.09E-34 T 10-10-2018 IPR038056 YjbR-like superfamily VF_A0256 fce286059f690c61a05bde9f6cdec8b3 124 Pfam PF04237 YjbR 18 109 6.7E-22 T 10-10-2018 IPR007351 Uncharacterised protein YjbR VF_0506 33faeebb6007e21dee0546d2de10c927 410 SUPERFAMILY SSF53649 1 410 2.09E-70 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_0506 33faeebb6007e21dee0546d2de10c927 410 Gene3D G3DSA:3.30.70.1250 116 237 2.7E-148 T 10-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VF_0506 33faeebb6007e21dee0546d2de10c927 410 Pfam PF01676 Metalloenzyme superfamily 2 400 3.6E-40 T 10-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 VF_0506 33faeebb6007e21dee0546d2de10c927 410 Hamap MF_00740 Phosphopentomutase [deoB]. 1 410 53.851 T 10-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VF_0506 33faeebb6007e21dee0546d2de10c927 410 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 408 8.4E-176 T 10-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VF_0506 33faeebb6007e21dee0546d2de10c927 410 Gene3D G3DSA:3.40.720.10 3 410 2.7E-148 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VF_0506 33faeebb6007e21dee0546d2de10c927 410 PIRSF PIRSF001491 1 410 3.8E-158 T 10-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VF_0506 33faeebb6007e21dee0546d2de10c927 410 SUPERFAMILY SSF143856 118 234 2.48E-47 T 10-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VF_2428 68ba9a43d16ee7cc3daf12af19c38554 450 Gene3D G3DSA:3.30.870.10 16 446 1.3E-171 T 10-10-2018 VF_2428 68ba9a43d16ee7cc3daf12af19c38554 450 PIRSF PIRSF000850 1 450 1.3E-200 T 10-10-2018 VF_2428 68ba9a43d16ee7cc3daf12af19c38554 450 Pfam PF13091 PLD-like domain 38 150 2.0E-8 T 10-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VF_2428 68ba9a43d16ee7cc3daf12af19c38554 450 Pfam PF13091 PLD-like domain 256 393 6.2E-25 T 10-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VF_2428 68ba9a43d16ee7cc3daf12af19c38554 450 SUPERFAMILY SSF56024 252 393 2.88E-26 T 10-10-2018 VF_2428 68ba9a43d16ee7cc3daf12af19c38554 450 SMART SM00155 130 156 0.0029 T 10-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VF_2428 68ba9a43d16ee7cc3daf12af19c38554 450 SMART SM00155 351 378 7.5E-5 T 10-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VF_2428 68ba9a43d16ee7cc3daf12af19c38554 450 Gene3D G3DSA:3.30.870.10 22 229 1.3E-171 T 10-10-2018 VF_2428 68ba9a43d16ee7cc3daf12af19c38554 450 SUPERFAMILY SSF56024 16 183 1.63E-24 T 10-10-2018 VF_0105 b6db1da7ba9acc6922fbb04288d42000 90 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 15.805 T 10-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_0105 b6db1da7ba9acc6922fbb04288d42000 90 SUPERFAMILY SSF63562 1 77 8.72E-24 T 10-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 VF_0105 b6db1da7ba9acc6922fbb04288d42000 90 SMART SM01409 8 61 6.0E-15 T 10-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 VF_0105 b6db1da7ba9acc6922fbb04288d42000 90 Pfam PF01192 RNA polymerase Rpb6 10 60 3.8E-15 T 10-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 VF_0105 b6db1da7ba9acc6922fbb04288d42000 90 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 1.1E-27 T 10-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VF_0105 b6db1da7ba9acc6922fbb04288d42000 90 Gene3D G3DSA:3.90.940.10 1 90 6.8E-28 T 10-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 VF_1710 db7660f5884262fd04c5e53335279cc2 183 Pfam PF03843 Outer membrane lipoprotein Slp family 13 157 1.2E-46 T 10-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 VF_1710 db7660f5884262fd04c5e53335279cc2 183 PIRSF PIRSF004982 1 183 7.6E-66 T 10-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 VF_1710 db7660f5884262fd04c5e53335279cc2 183 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 5 153 1.7E-35 T 10-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 VF_A0188 d133bbfaec2e25adba9d00874cda59bc 817 SUPERFAMILY SSF53706 52 669 1.96E-162 T 10-10-2018 VF_A0188 d133bbfaec2e25adba9d00874cda59bc 817 Gene3D G3DSA:3.40.50.740 88 568 5.3E-214 T 10-10-2018 VF_A0188 d133bbfaec2e25adba9d00874cda59bc 817 SUPERFAMILY SSF50692 675 814 1.49E-39 T 10-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VF_A0188 d133bbfaec2e25adba9d00874cda59bc 817 TIGRFAM TIGR00509 bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxide reductases 45 815 0.0 T 10-10-2018 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase GO:0016491|GO:0055114 VF_A0188 d133bbfaec2e25adba9d00874cda59bc 817 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 4 28 4.5E-5 T 10-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VF_A0188 d133bbfaec2e25adba9d00874cda59bc 817 Pfam PF01568 Molydopterin dinucleotide binding domain 677 787 6.4E-25 T 10-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VF_A0188 d133bbfaec2e25adba9d00874cda59bc 817 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 500 517 - T 10-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 VF_A0188 d133bbfaec2e25adba9d00874cda59bc 817 Gene3D G3DSA:2.40.40.20 653 811 3.2E-44 T 10-10-2018 VF_A0188 d133bbfaec2e25adba9d00874cda59bc 817 Pfam PF00384 Molybdopterin oxidoreductase 88 557 1.0E-100 T 10-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A0188 d133bbfaec2e25adba9d00874cda59bc 817 Gene3D G3DSA:3.40.228.10 180 645 5.3E-214 T 10-10-2018 VF_A0188 d133bbfaec2e25adba9d00874cda59bc 817 Gene3D G3DSA:3.90.55.10 83 619 5.3E-214 T 10-10-2018 VF_2041 b1ebf3aebb89faf7a6704ecb62972f92 325 Pfam PF00589 Phage integrase family 248 306 8.0E-12 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VF_2041 b1ebf3aebb89faf7a6704ecb62972f92 325 Pfam PF00589 Phage integrase family 161 235 8.2E-7 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VF_2041 b1ebf3aebb89faf7a6704ecb62972f92 325 SUPERFAMILY SSF56349 58 314 3.83E-45 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VF_2041 b1ebf3aebb89faf7a6704ecb62972f92 325 Gene3D G3DSA:1.10.443.10 157 324 1.4E-47 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VF_A0940 02251e257b4813aa5b0fd0e1f8f033e9 577 SUPERFAMILY SSF52794 122 222 2.79E-36 T 10-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VF_A0940 02251e257b4813aa5b0fd0e1f8f033e9 577 Gene3D G3DSA:3.40.50.2300 113 223 2.0E-40 T 10-10-2018 VF_A0940 02251e257b4813aa5b0fd0e1f8f033e9 577 Gene3D G3DSA:3.40.50.2300 1 104 3.2E-24 T 10-10-2018 VF_A0940 02251e257b4813aa5b0fd0e1f8f033e9 577 Pfam PF02378 Phosphotransferase system, EIIC 247 510 7.4E-17 T 10-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VF_A0940 02251e257b4813aa5b0fd0e1f8f033e9 577 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 124 207 2.3E-36 T 10-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 VF_A0940 02251e257b4813aa5b0fd0e1f8f033e9 577 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 230 566 6.3E-138 T 10-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 VF_A0940 02251e257b4813aa5b0fd0e1f8f033e9 577 SUPERFAMILY SSF52794 3 102 2.27E-28 T 10-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VF_A0940 02251e257b4813aa5b0fd0e1f8f033e9 577 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 6 94 2.8E-14 T 10-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VF_A0940 02251e257b4813aa5b0fd0e1f8f033e9 577 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 125 212 2.2E-16 T 10-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VF_A0602 3d991ae10870060ad5e260a81d019f61 276 TIGRFAM TIGR00552 nadE: NAD+ synthetase 15 272 1.3E-65 T 10-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 VF_A0602 3d991ae10870060ad5e260a81d019f61 276 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 16 274 45.66 T 10-10-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 VF_A0602 3d991ae10870060ad5e260a81d019f61 276 SUPERFAMILY SSF52402 1 276 4.41E-80 T 10-10-2018 VF_A0602 3d991ae10870060ad5e260a81d019f61 276 Gene3D G3DSA:3.40.50.620 1 276 1.3E-80 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_A0602 3d991ae10870060ad5e260a81d019f61 276 Pfam PF02540 NAD synthase 21 270 1.4E-63 T 10-10-2018 IPR022310 NAD/GMP synthase VF_0706 920d1728ad74e04fc46be96c8e268e2d 167 PIRSF PIRSF006162 6 165 1.3E-53 T 10-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 VF_0706 920d1728ad74e04fc46be96c8e268e2d 167 SUPERFAMILY SSF101307 9 160 2.49E-48 T 10-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 VF_0706 920d1728ad74e04fc46be96c8e268e2d 167 Pfam PF04608 Phosphatidylglycerophosphatase A 15 159 2.8E-52 T 10-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 VF_0246 433b8d174a58672811ce63e6947601f0 123 Pfam PF00238 Ribosomal protein L14p/L23e 1 123 2.0E-54 T 10-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 VF_0246 433b8d174a58672811ce63e6947601f0 123 SMART SM01374 1 123 5.5E-85 T 10-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 VF_0246 433b8d174a58672811ce63e6947601f0 123 Gene3D G3DSA:2.40.150.20 1 123 1.4E-55 T 10-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 VF_0246 433b8d174a58672811ce63e6947601f0 123 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 123 1.1E-58 T 10-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 VF_0246 433b8d174a58672811ce63e6947601f0 123 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 10-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0246 433b8d174a58672811ce63e6947601f0 123 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 123 27.468 T 10-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 VF_0246 433b8d174a58672811ce63e6947601f0 123 SUPERFAMILY SSF50193 2 122 3.53E-51 T 10-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 VF_A0597 e177466a175560c5af0486e1dc11ed7f 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 5.9E-18 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0597 e177466a175560c5af0486e1dc11ed7f 311 Gene3D G3DSA:3.40.190.10 97 296 7.3E-63 T 10-10-2018 VF_A0597 e177466a175560c5af0486e1dc11ed7f 311 Pfam PF03466 LysR substrate binding domain 93 298 1.2E-45 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0597 e177466a175560c5af0486e1dc11ed7f 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 6.4E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0597 e177466a175560c5af0486e1dc11ed7f 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 6.4E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0597 e177466a175560c5af0486e1dc11ed7f 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 6.4E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0597 e177466a175560c5af0486e1dc11ed7f 311 Gene3D G3DSA:1.10.10.10 8 93 7.8E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0597 e177466a175560c5af0486e1dc11ed7f 311 SUPERFAMILY SSF46785 8 92 1.36E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0597 e177466a175560c5af0486e1dc11ed7f 311 SUPERFAMILY SSF53850 95 303 7.29E-46 T 10-10-2018 VF_A0597 e177466a175560c5af0486e1dc11ed7f 311 Gene3D G3DSA:3.40.190.10 168 270 7.3E-63 T 10-10-2018 VF_1229 a87d6da6440b6068619c8dc61b676769 685 SUPERFAMILY SSF69255 360 448 9.68E-34 T 10-10-2018 VF_1229 a87d6da6440b6068619c8dc61b676769 685 Gene3D G3DSA:2.40.50.230 353 453 4.0E-43 T 10-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily VF_1229 a87d6da6440b6068619c8dc61b676769 685 SUPERFAMILY SSF69349 438 620 1.8E-45 T 10-10-2018 VF_1229 a87d6da6440b6068619c8dc61b676769 685 Pfam PF05954 Phage late control gene D protein (GPD) 28 326 8.2E-65 T 10-10-2018 VF_1229 a87d6da6440b6068619c8dc61b676769 685 Gene3D G3DSA:2.30.110.50 21 327 2.4E-71 T 10-10-2018 VF_1229 a87d6da6440b6068619c8dc61b676769 685 SUPERFAMILY SSF69279 10 189 3.49E-50 T 10-10-2018 VF_1229 a87d6da6440b6068619c8dc61b676769 685 Gene3D G3DSA:3.30.1920.30 226 283 2.4E-71 T 10-10-2018 VF_1229 a87d6da6440b6068619c8dc61b676769 685 Gene3D G3DSA:3.55.50.10 101 194 2.4E-71 T 10-10-2018 VF_1229 a87d6da6440b6068619c8dc61b676769 685 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 21 499 7.2E-113 T 10-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein VF_1229 a87d6da6440b6068619c8dc61b676769 685 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 9 517 4.6E-177 T 10-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset VF_1229 a87d6da6440b6068619c8dc61b676769 685 SUPERFAMILY SSF69279 196 360 7.99E-28 T 10-10-2018 VF_0256 0c67cefac3993a113cebb6f348a063f5 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 10-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0256 0c67cefac3993a113cebb6f348a063f5 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 144 18.814 T 10-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 VF_0256 0c67cefac3993a113cebb6f348a063f5 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 1.1E-49 T 10-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0256 0c67cefac3993a113cebb6f348a063f5 144 SUPERFAMILY SSF52080 4 143 3.01E-46 T 10-10-2018 IPR036227 Ribosomal L18e/L15P superfamily VF_0256 0c67cefac3993a113cebb6f348a063f5 144 Gene3D G3DSA:3.100.10.10 70 144 1.8E-12 T 10-10-2018 VF_0256 0c67cefac3993a113cebb6f348a063f5 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 8.4E-30 T 10-10-2018 IPR021131 Ribosomal protein L18e/L15P VF_2287 dfd403d4f8e2f9659732ba00106e7cab 227 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 5 224 35.998 T 10-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 VF_2287 dfd403d4f8e2f9659732ba00106e7cab 227 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 8 223 1.5E-64 T 10-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 VF_2287 dfd403d4f8e2f9659732ba00106e7cab 227 Gene3D G3DSA:1.10.150.240 20 93 4.9E-65 T 10-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VF_2287 dfd403d4f8e2f9659732ba00106e7cab 227 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 86 192 1.9E-10 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_2287 dfd403d4f8e2f9659732ba00106e7cab 227 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 95 188 1.9E-10 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_2287 dfd403d4f8e2f9659732ba00106e7cab 227 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 193 3.7E-39 T 10-10-2018 VF_2287 dfd403d4f8e2f9659732ba00106e7cab 227 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 83 194 7.1E-15 T 10-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 VF_2287 dfd403d4f8e2f9659732ba00106e7cab 227 SUPERFAMILY SSF56784 2 223 1.97E-58 T 10-10-2018 IPR036412 HAD-like superfamily VF_2287 dfd403d4f8e2f9659732ba00106e7cab 227 Gene3D G3DSA:3.40.50.1000 8 216 4.9E-65 T 10-10-2018 IPR023214 HAD superfamily VF_2287 dfd403d4f8e2f9659732ba00106e7cab 227 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 1.3E-7 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_2287 dfd403d4f8e2f9659732ba00106e7cab 227 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 138 154 1.3E-7 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_2287 dfd403d4f8e2f9659732ba00106e7cab 227 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 107 120 1.3E-7 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_0908 b262abc0ee4ab702dfc0d197e37bcb5f 435 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 433 40.826 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VF_0908 b262abc0ee4ab702dfc0d197e37bcb5f 435 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 109 1.8E-30 T 10-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 VF_0908 b262abc0ee4ab702dfc0d197e37bcb5f 435 Gene3D G3DSA:3.30.930.10 107 435 2.3E-113 T 10-10-2018 VF_0908 b262abc0ee4ab702dfc0d197e37bcb5f 435 SUPERFAMILY SSF55681 118 431 6.08E-98 T 10-10-2018 VF_0908 b262abc0ee4ab702dfc0d197e37bcb5f 435 SUPERFAMILY SSF46589 1 114 1.05E-29 T 10-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 VF_0908 b262abc0ee4ab702dfc0d197e37bcb5f 435 Gene3D G3DSA:1.10.287.40 1 106 3.8E-21 T 10-10-2018 VF_0908 b262abc0ee4ab702dfc0d197e37bcb5f 435 PRINTS PR00981 Seryl-tRNA synthetase signature 327 340 2.1E-33 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VF_0908 b262abc0ee4ab702dfc0d197e37bcb5f 435 PRINTS PR00981 Seryl-tRNA synthetase signature 344 360 2.1E-33 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VF_0908 b262abc0ee4ab702dfc0d197e37bcb5f 435 PRINTS PR00981 Seryl-tRNA synthetase signature 275 287 2.1E-33 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VF_0908 b262abc0ee4ab702dfc0d197e37bcb5f 435 PRINTS PR00981 Seryl-tRNA synthetase signature 287 300 2.1E-33 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VF_0908 b262abc0ee4ab702dfc0d197e37bcb5f 435 PRINTS PR00981 Seryl-tRNA synthetase signature 362 378 2.1E-33 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VF_0908 b262abc0ee4ab702dfc0d197e37bcb5f 435 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 235 410 9.3E-32 T 10-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0908 b262abc0ee4ab702dfc0d197e37bcb5f 435 PIRSF PIRSF001529 1 435 4.9E-185 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VF_0908 b262abc0ee4ab702dfc0d197e37bcb5f 435 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 428 1.0E-175 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VF_0238 8cc043a22c35bb317760485d5bc09e59 100 Pfam PF00276 Ribosomal protein L23 9 95 1.8E-29 T 10-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 VF_0238 8cc043a22c35bb317760485d5bc09e59 100 SUPERFAMILY SSF54189 2 92 1.83E-31 T 10-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0238 8cc043a22c35bb317760485d5bc09e59 100 Gene3D G3DSA:3.30.70.330 1 100 2.5E-36 T 10-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VF_0238 8cc043a22c35bb317760485d5bc09e59 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 22.064 T 10-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 VF_0203 b9ade8078af7749586613278bdebc9b2 499 PIRSF PIRSF006603 41 498 1.6E-166 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_0203 b9ade8078af7749586613278bdebc9b2 499 TIGRFAM TIGR00797 matE: MATE efflux family protein 67 459 4.8E-67 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_0203 b9ade8078af7749586613278bdebc9b2 499 Pfam PF01554 MatE 290 451 1.2E-23 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_0203 b9ade8078af7749586613278bdebc9b2 499 Pfam PF01554 MatE 67 226 8.0E-29 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_1410 8f61d98ee2799f1ecabdd01ca29cc2bc 530 Pfam PF03806 AbgT putative transporter family 21 528 1.0E-227 T 10-10-2018 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 VF_1538 36389aca69920ea4361ce7fa7fed35b8 784 Gene3D G3DSA:3.40.50.300 455 598 1.8E-11 T 10-10-2018 VF_1538 36389aca69920ea4361ce7fa7fed35b8 784 Pfam PF13401 AAA domain 474 587 2.3E-7 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1538 36389aca69920ea4361ce7fa7fed35b8 784 SUPERFAMILY SSF52540 459 630 2.02E-11 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2562 aea05fe93674a5c277904ae0ab28dc98 452 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 314 348 5.0E-5 T 10-10-2018 IPR001451 Hexapeptide repeat VF_2562 aea05fe93674a5c277904ae0ab28dc98 452 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 392 426 6.1E-7 T 10-10-2018 IPR001451 Hexapeptide repeat VF_2562 aea05fe93674a5c277904ae0ab28dc98 452 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 270 296 2.7E-6 T 10-10-2018 IPR001451 Hexapeptide repeat VF_2562 aea05fe93674a5c277904ae0ab28dc98 452 SUPERFAMILY SSF53448 1 249 1.1E-63 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_2562 aea05fe93674a5c277904ae0ab28dc98 452 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 449 42.125 T 10-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 VF_2562 aea05fe93674a5c277904ae0ab28dc98 452 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 452 2.7E-203 T 10-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 VF_2562 aea05fe93674a5c277904ae0ab28dc98 452 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 400 428 - T 10-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VF_2562 aea05fe93674a5c277904ae0ab28dc98 452 Gene3D G3DSA:2.160.10.10 225 452 5.5E-72 T 10-10-2018 VF_2562 aea05fe93674a5c277904ae0ab28dc98 452 SUPERFAMILY SSF51161 252 435 4.21E-51 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_2562 aea05fe93674a5c277904ae0ab28dc98 452 Gene3D G3DSA:3.90.550.10 1 224 2.0E-67 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_2562 aea05fe93674a5c277904ae0ab28dc98 452 Pfam PF12804 MobA-like NTP transferase domain 5 128 8.4E-23 T 10-10-2018 IPR025877 MobA-like NTP transferase VF_2163 323a665ef00c93cd0418e78e5fc4022f 821 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 4 819 0.0 T 10-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 VF_2163 323a665ef00c93cd0418e78e5fc4022f 821 SMART SM00847 387 486 9.2E-6 T 10-10-2018 IPR007502 Helicase-associated domain GO:0004386 VF_2163 323a665ef00c93cd0418e78e5fc4022f 821 Pfam PF08482 ATP-dependent helicase C-terminal 675 807 1.7E-50 T 10-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal VF_2163 323a665ef00c93cd0418e78e5fc4022f 821 Pfam PF00270 DEAD/DEAH box helicase 14 166 7.1E-9 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_2163 323a665ef00c93cd0418e78e5fc4022f 821 Pfam PF04408 Helicase associated domain (HA2) 388 431 3.3E-6 T 10-10-2018 IPR007502 Helicase-associated domain GO:0004386 VF_2163 323a665ef00c93cd0418e78e5fc4022f 821 Pfam PF00271 Helicase conserved C-terminal domain 207 326 1.1E-11 T 10-10-2018 IPR001650 Helicase, C-terminal VF_2163 323a665ef00c93cd0418e78e5fc4022f 821 Gene3D G3DSA:3.40.50.300 1 179 9.3E-50 T 10-10-2018 VF_2163 323a665ef00c93cd0418e78e5fc4022f 821 SUPERFAMILY SSF52540 16 432 8.55E-49 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2163 323a665ef00c93cd0418e78e5fc4022f 821 Gene3D G3DSA:3.40.50.300 180 345 1.5E-50 T 10-10-2018 VF_2163 323a665ef00c93cd0418e78e5fc4022f 821 PIRSF PIRSF005496 1 821 2.4E-298 T 10-10-2018 VF_2163 323a665ef00c93cd0418e78e5fc4022f 821 SMART SM00490 226 327 2.0E-12 T 10-10-2018 IPR001650 Helicase, C-terminal VF_2163 323a665ef00c93cd0418e78e5fc4022f 821 Gene3D G3DSA:1.20.120.1080 372 466 2.7E-8 T 10-10-2018 VF_2163 323a665ef00c93cd0418e78e5fc4022f 821 SMART SM00487 2 186 3.3E-14 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_0932 d8b0251ed15461675f24460064097166 331 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 1 328 2.3E-132 T 10-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 VF_0932 d8b0251ed15461675f24460064097166 331 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 1 329 26.066 T 10-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 VF_0932 d8b0251ed15461675f24460064097166 331 Pfam PF03116 NQR2, RnfD, RnfE family 1 327 2.5E-99 T 10-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 VF_A0103 f6a57e9d8cd9397ef81518b52b56eb6a 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 187 1.7E-12 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0103 f6a57e9d8cd9397ef81518b52b56eb6a 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 175 1.7E-12 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0103 f6a57e9d8cd9397ef81518b52b56eb6a 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 145 159 1.7E-12 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0103 f6a57e9d8cd9397ef81518b52b56eb6a 205 Gene3D G3DSA:3.40.50.2300 8 136 5.7E-36 T 10-10-2018 VF_A0103 f6a57e9d8cd9397ef81518b52b56eb6a 205 SUPERFAMILY SSF52172 10 161 3.84E-31 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0103 f6a57e9d8cd9397ef81518b52b56eb6a 205 Pfam PF00196 Bacterial regulatory proteins, luxR family 144 197 3.3E-19 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_A0103 f6a57e9d8cd9397ef81518b52b56eb6a 205 SUPERFAMILY SSF46894 142 199 1.42E-16 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_A0103 f6a57e9d8cd9397ef81518b52b56eb6a 205 Pfam PF00072 Response regulator receiver domain 13 122 6.9E-24 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0103 f6a57e9d8cd9397ef81518b52b56eb6a 205 Gene3D G3DSA:1.10.10.10 137 201 1.9E-19 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0103 f6a57e9d8cd9397ef81518b52b56eb6a 205 SMART SM00448 11 122 6.5E-24 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0103 f6a57e9d8cd9397ef81518b52b56eb6a 205 SMART SM00421 142 199 1.0E-20 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_2234 bcfbe11d036e2cfa2522420200fbfa34 476 SUPERFAMILY SSF52374 340 471 2.82E-22 T 10-10-2018 VF_2234 bcfbe11d036e2cfa2522420200fbfa34 476 Gene3D G3DSA:3.40.1190.20 5 310 1.5E-110 T 10-10-2018 IPR029056 Ribokinase-like VF_2234 bcfbe11d036e2cfa2522420200fbfa34 476 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 6 312 6.8E-126 T 10-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 VF_2234 bcfbe11d036e2cfa2522420200fbfa34 476 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 332 472 5.8E-60 T 10-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 VF_2234 bcfbe11d036e2cfa2522420200fbfa34 476 SUPERFAMILY SSF53613 12 304 2.81E-59 T 10-10-2018 IPR029056 Ribokinase-like VF_2234 bcfbe11d036e2cfa2522420200fbfa34 476 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 474 42.917 T 10-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 VF_2234 bcfbe11d036e2cfa2522420200fbfa34 476 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 10-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VF_2234 bcfbe11d036e2cfa2522420200fbfa34 476 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 342 408 3.8E-17 T 10-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VF_2234 bcfbe11d036e2cfa2522420200fbfa34 476 Pfam PF00294 pfkB family carbohydrate kinase 12 302 6.4E-48 T 10-10-2018 IPR011611 Carbohydrate kinase PfkB VF_2234 bcfbe11d036e2cfa2522420200fbfa34 476 Gene3D G3DSA:3.40.50.620 324 475 1.4E-35 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_2234 bcfbe11d036e2cfa2522420200fbfa34 476 Pfam PF01467 Cytidylyltransferase-like 345 469 6.3E-14 T 10-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VF_1919 72b3cd8bfc4e6625be5c69ac475d6d2b 175 SUPERFAMILY SSF55021 87 173 1.26E-18 T 10-10-2018 VF_1919 72b3cd8bfc4e6625be5c69ac475d6d2b 175 Pfam PF13740 ACT domain 3 78 2.6E-25 T 10-10-2018 VF_1919 72b3cd8bfc4e6625be5c69ac475d6d2b 175 Gene3D G3DSA:3.30.70.260 88 175 2.3E-27 T 10-10-2018 VF_1919 72b3cd8bfc4e6625be5c69ac475d6d2b 175 Gene3D G3DSA:3.30.70.260 1 85 1.3E-24 T 10-10-2018 VF_1919 72b3cd8bfc4e6625be5c69ac475d6d2b 175 PIRSF PIRSF028103 1 175 1.6E-58 T 10-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 VF_1919 72b3cd8bfc4e6625be5c69ac475d6d2b 175 SUPERFAMILY SSF55021 1 83 7.53E-18 T 10-10-2018 VF_1680 d76932852be24c7eb19a34283bf96938 290 SUPERFAMILY SSF103481 188 288 4.05E-11 T 10-10-2018 VF_1680 d76932852be24c7eb19a34283bf96938 290 SUPERFAMILY SSF103481 46 143 1.96E-9 T 10-10-2018 VF_1680 d76932852be24c7eb19a34283bf96938 290 Pfam PF00892 EamA-like transporter family 152 283 1.9E-12 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_1680 d76932852be24c7eb19a34283bf96938 290 Pfam PF00892 EamA-like transporter family 9 143 2.4E-7 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 SUPERFAMILY SSF81593 822 950 1.02E-31 T 10-10-2018 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 Gene3D G3DSA:3.30.460.100 569 818 7.5E-89 T 10-10-2018 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 SUPERFAMILY SSF81301 532 821 5.23E-86 T 10-10-2018 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 30 951 19.015 T 10-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 Gene3D G3DSA:1.20.120.330 294 449 4.9E-55 T 10-10-2018 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 Pfam PF08335 GlnD PII-uridylyltransferase 834 916 4.9E-6 T 10-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 Pfam PF08335 GlnD PII-uridylyltransferase 306 445 5.9E-45 T 10-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 560 810 2.0E-95 T 10-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 33 285 4.2E-84 T 10-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 SUPERFAMILY SSF81593 296 445 1.88E-45 T 10-10-2018 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 Gene3D G3DSA:1.10.4050.10 4 112 2.0E-11 T 10-10-2018 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 Gene3D G3DSA:1.20.120.330 819 951 1.8E-41 T 10-10-2018 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 Gene3D G3DSA:3.30.460.10 121 293 5.7E-65 T 10-10-2018 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 Gene3D G3DSA:1.20.120.1510 456 568 2.2E-32 T 10-10-2018 VF_2235 49d92cc73442fe4894b99b6f63fa926c 951 SUPERFAMILY SSF81301 15 295 4.5E-82 T 10-10-2018 VF_1714 278c7ada12a1f456c12c367b04b7506b 231 Gene3D G3DSA:3.40.50.170 35 231 1.2E-66 T 10-10-2018 VF_1714 278c7ada12a1f456c12c367b04b7506b 231 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 1 231 4.4E-100 T 10-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VF_1714 278c7ada12a1f456c12c367b04b7506b 231 Pfam PF00551 Formyl transferase 36 213 4.1E-47 T 10-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VF_1714 278c7ada12a1f456c12c367b04b7506b 231 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 59 86 4.0E-44 T 10-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VF_1714 278c7ada12a1f456c12c367b04b7506b 231 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 37 59 4.0E-44 T 10-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VF_1714 278c7ada12a1f456c12c367b04b7506b 231 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 205 230 4.0E-44 T 10-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VF_1714 278c7ada12a1f456c12c367b04b7506b 231 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 183 205 4.0E-44 T 10-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VF_1714 278c7ada12a1f456c12c367b04b7506b 231 SUPERFAMILY SSF53328 36 230 5.1E-58 T 10-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VF_0184 6273b8b0f5b50ff9eda0d3ce1bfaa674 437 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 44 429 4.6E-115 T 10-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VF_0184 6273b8b0f5b50ff9eda0d3ce1bfaa674 437 PIRSF PIRSF000390 17 436 1.6E-125 T 10-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VF_0184 6273b8b0f5b50ff9eda0d3ce1bfaa674 437 SUPERFAMILY SSF53383 38 433 1.6E-105 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_0184 6273b8b0f5b50ff9eda0d3ce1bfaa674 437 Gene3D G3DSA:3.90.1150.10 306 437 6.4E-55 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_0184 6273b8b0f5b50ff9eda0d3ce1bfaa674 437 Gene3D G3DSA:3.40.640.10 1 305 2.4E-103 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_2336 59910757ffb75336eb539f6d5204b2a8 127 Hamap MF_00708 Fumarate reductase subunit C [frdC]. 1 127 26.697 T 10-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 VF_2336 59910757ffb75336eb539f6d5204b2a8 127 Gene3D G3DSA:1.20.1300.10 1 127 5.5E-47 T 10-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2336 59910757ffb75336eb539f6d5204b2a8 127 SUPERFAMILY SSF81343 1 127 2.18E-52 T 10-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2336 59910757ffb75336eb539f6d5204b2a8 127 PIRSF PIRSF000180 1 127 3.9E-54 T 10-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 VF_2336 59910757ffb75336eb539f6d5204b2a8 127 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 7 106 2.0E-54 T 10-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 VF_2336 59910757ffb75336eb539f6d5204b2a8 127 Pfam PF02300 Fumarate reductase subunit C 2 127 1.5E-48 T 10-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 VF_1216 2ca3c13ddbdd18800a089ece3e5b7707 156 SUPERFAMILY SSF54364 1 63 1.15E-20 T 10-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 VF_1216 2ca3c13ddbdd18800a089ece3e5b7707 156 SUPERFAMILY SSF55200 68 156 2.09E-34 T 10-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 VF_1216 2ca3c13ddbdd18800a089ece3e5b7707 156 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 1 156 3.5E-66 T 10-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 VF_1216 2ca3c13ddbdd18800a089ece3e5b7707 156 Gene3D G3DSA:3.10.20.80 1 60 9.7E-22 T 10-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 VF_1216 2ca3c13ddbdd18800a089ece3e5b7707 156 ProSitePatterns PS00938 Initiation factor 3 signature. 43 56 - T 10-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 VF_1216 2ca3c13ddbdd18800a089ece3e5b7707 156 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 156 24.691 T 10-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 VF_1216 2ca3c13ddbdd18800a089ece3e5b7707 156 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 1 61 9.8E-21 T 10-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 VF_1216 2ca3c13ddbdd18800a089ece3e5b7707 156 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 68 154 8.1E-37 T 10-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 VF_1216 2ca3c13ddbdd18800a089ece3e5b7707 156 Gene3D G3DSA:3.30.110.10 61 156 3.3E-39 T 10-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 VF_1698 d6377e4b2647e21211d79e5d62e499b5 337 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 319 6.7E-58 T 10-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VF_1698 d6377e4b2647e21211d79e5d62e499b5 337 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 4 333 36.237 T 10-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_1698 d6377e4b2647e21211d79e5d62e499b5 337 SUPERFAMILY SSF55347 131 320 7.4E-76 T 10-10-2018 VF_1698 d6377e4b2647e21211d79e5d62e499b5 337 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 232 246 - T 10-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_1698 d6377e4b2647e21211d79e5d62e499b5 337 SMART SM00859 6 121 2.6E-40 T 10-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VF_1698 d6377e4b2647e21211d79e5d62e499b5 337 SUPERFAMILY SSF51735 5 159 1.03E-51 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1698 d6377e4b2647e21211d79e5d62e499b5 337 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 7 334 3.4E-130 T 10-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_1698 d6377e4b2647e21211d79e5d62e499b5 337 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 7 119 8.6E-32 T 10-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VF_1698 d6377e4b2647e21211d79e5d62e499b5 337 PIRSF PIRSF000148 4 337 3.1E-129 T 10-10-2018 VF_1698 d6377e4b2647e21211d79e5d62e499b5 337 Gene3D G3DSA:3.40.50.720 7 330 2.8E-148 T 10-10-2018 VF_1698 d6377e4b2647e21211d79e5d62e499b5 337 Gene3D G3DSA:3.30.360.10 130 316 2.8E-148 T 10-10-2018 VF_1784 3b6bf36c18acbb2d88c9af8edbf6173a 374 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 7 371 39.751 T 10-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 VF_1784 3b6bf36c18acbb2d88c9af8edbf6173a 374 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 7 370 1.4E-148 T 10-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 VF_1784 3b6bf36c18acbb2d88c9af8edbf6173a 374 SUPERFAMILY SSF52402 5 252 8.82E-57 T 10-10-2018 VF_1784 3b6bf36c18acbb2d88c9af8edbf6173a 374 Pfam PF03054 tRNA methyl transferase 7 370 4.1E-138 T 10-10-2018 VF_1784 3b6bf36c18acbb2d88c9af8edbf6173a 374 Gene3D G3DSA:2.40.30.10 292 374 4.0E-32 T 10-10-2018 VF_1784 3b6bf36c18acbb2d88c9af8edbf6173a 374 Gene3D G3DSA:3.40.50.620 1 219 1.9E-93 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_1784 3b6bf36c18acbb2d88c9af8edbf6173a 374 Gene3D G3DSA:2.30.30.280 221 290 3.9E-25 T 10-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 VF_0360 f59a8093ed16c6f4c7310884cd4c7474 282 Gene3D G3DSA:3.40.50.300 27 184 5.4E-12 T 10-10-2018 VF_0360 f59a8093ed16c6f4c7310884cd4c7474 282 Pfam PF13401 AAA domain 42 169 3.0E-21 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0360 f59a8093ed16c6f4c7310884cd4c7474 282 SUPERFAMILY SSF52540 14 260 8.79E-29 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2472 8dbe1c351cd2c31d46e71022ac0344a9 404 Gene3D G3DSA:1.20.81.30 54 172 2.5E-35 T 10-10-2018 VF_2472 8dbe1c351cd2c31d46e71022ac0344a9 404 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 403 3.6E-157 T 10-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 VF_2472 8dbe1c351cd2c31d46e71022ac0344a9 404 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 165 193 - T 10-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 VF_2472 8dbe1c351cd2c31d46e71022ac0344a9 404 Pfam PF00482 Type II secretion system (T2SS), protein F 273 395 2.5E-25 T 10-10-2018 IPR018076 Type II secretion system F domain VF_2472 8dbe1c351cd2c31d46e71022ac0344a9 404 Pfam PF00482 Type II secretion system (T2SS), protein F 71 193 1.1E-33 T 10-10-2018 IPR018076 Type II secretion system F domain VF_2472 8dbe1c351cd2c31d46e71022ac0344a9 404 PRINTS PR00812 Bacterial general secretion pathway protein F signature 165 193 1.2E-39 T 10-10-2018 IPR003004 GspF/PilC family VF_2472 8dbe1c351cd2c31d46e71022ac0344a9 404 PRINTS PR00812 Bacterial general secretion pathway protein F signature 368 382 1.2E-39 T 10-10-2018 IPR003004 GspF/PilC family VF_2472 8dbe1c351cd2c31d46e71022ac0344a9 404 PRINTS PR00812 Bacterial general secretion pathway protein F signature 66 78 1.2E-39 T 10-10-2018 IPR003004 GspF/PilC family VF_2472 8dbe1c351cd2c31d46e71022ac0344a9 404 PRINTS PR00812 Bacterial general secretion pathway protein F signature 384 403 1.2E-39 T 10-10-2018 IPR003004 GspF/PilC family VF_2472 8dbe1c351cd2c31d46e71022ac0344a9 404 Gene3D G3DSA:1.20.81.30 256 366 2.3E-26 T 10-10-2018 VF_0053 9c2d5efcb0bc5a0a557506bb18ee3fbf 338 Pfam PF00490 Delta-aminolevulinic acid dehydratase 12 332 6.5E-142 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VF_0053 9c2d5efcb0bc5a0a557506bb18ee3fbf 338 SUPERFAMILY SSF51569 7 335 5.98E-146 T 10-10-2018 VF_0053 9c2d5efcb0bc5a0a557506bb18ee3fbf 338 PIRSF PIRSF001415 3 336 7.8E-153 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VF_0053 9c2d5efcb0bc5a0a557506bb18ee3fbf 338 SMART SM01004 9 333 1.7E-248 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VF_0053 9c2d5efcb0bc5a0a557506bb18ee3fbf 338 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 252 264 - T 10-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VF_0053 9c2d5efcb0bc5a0a557506bb18ee3fbf 338 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 198 217 1.0E-57 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VF_0053 9c2d5efcb0bc5a0a557506bb18ee3fbf 338 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 160 179 1.0E-57 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VF_0053 9c2d5efcb0bc5a0a557506bb18ee3fbf 338 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 252 268 1.0E-57 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VF_0053 9c2d5efcb0bc5a0a557506bb18ee3fbf 338 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 1.0E-57 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VF_0053 9c2d5efcb0bc5a0a557506bb18ee3fbf 338 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 129 143 1.0E-57 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VF_0053 9c2d5efcb0bc5a0a557506bb18ee3fbf 338 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 277 292 1.0E-57 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VF_0053 9c2d5efcb0bc5a0a557506bb18ee3fbf 338 Gene3D G3DSA:3.20.20.70 2 337 5.1E-149 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_2243 7547662b81e26ec2e43e60b1ccbad7ba 518 SUPERFAMILY SSF47090 434 511 2.83E-13 T 10-10-2018 IPR036365 PGBD-like superfamily VF_2243 7547662b81e26ec2e43e60b1ccbad7ba 518 Pfam PF01471 Putative peptidoglycan binding domain 468 502 2.2E-8 T 10-10-2018 IPR002477 Peptidoglycan binding-like VF_2243 7547662b81e26ec2e43e60b1ccbad7ba 518 Gene3D G3DSA:1.10.101.10 435 503 2.7E-47 T 10-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 VF_2243 7547662b81e26ec2e43e60b1ccbad7ba 518 Gene3D G3DSA:3.90.70.10 334 434 2.7E-47 T 10-10-2018 VF_2243 7547662b81e26ec2e43e60b1ccbad7ba 518 Gene3D G3DSA:3.40.50.300 25 185 9.2E-17 T 10-10-2018 VF_2243 7547662b81e26ec2e43e60b1ccbad7ba 518 Pfam PF13401 AAA domain 42 171 4.1E-22 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2243 7547662b81e26ec2e43e60b1ccbad7ba 518 SUPERFAMILY SSF52540 5 261 2.0E-36 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0368 8df8f95b94abdc2cfdd6a26909826e30 561 Gene3D G3DSA:3.30.70.270 408 559 5.0E-35 T 10-10-2018 VF_A0368 8df8f95b94abdc2cfdd6a26909826e30 561 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 407 555 1.4E-27 T 10-10-2018 IPR000160 GGDEF domain VF_A0368 8df8f95b94abdc2cfdd6a26909826e30 561 Pfam PF00990 Diguanylate cyclase, GGDEF domain 411 553 5.6E-27 T 10-10-2018 IPR000160 GGDEF domain VF_A0368 8df8f95b94abdc2cfdd6a26909826e30 561 SMART SM00267 399 557 4.6E-28 T 10-10-2018 IPR000160 GGDEF domain VF_A0368 8df8f95b94abdc2cfdd6a26909826e30 561 SUPERFAMILY SSF55073 415 555 4.45E-30 T 10-10-2018 IPR029787 Nucleotide cyclase VF_2256 d06db30e68e4adc3b040235478d6d4f7 514 Gene3D G3DSA:3.30.300.310 419 514 5.4E-30 T 10-10-2018 VF_2256 d06db30e68e4adc3b040235478d6d4f7 514 Pfam PF13193 AMP-binding enzyme C-terminal domain 432 507 7.1E-21 T 10-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VF_2256 d06db30e68e4adc3b040235478d6d4f7 514 SUPERFAMILY SSF56801 4 514 3.4E-154 T 10-10-2018 VF_2256 d06db30e68e4adc3b040235478d6d4f7 514 Pfam PF00501 AMP-binding enzyme 8 423 4.0E-113 T 10-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VF_2256 d06db30e68e4adc3b040235478d6d4f7 514 ProSitePatterns PS00455 Putative AMP-binding domain signature. 173 184 - T 10-10-2018 IPR020845 AMP-binding, conserved site VF_2256 d06db30e68e4adc3b040235478d6d4f7 514 Gene3D G3DSA:3.40.50.12780 1 416 6.8E-123 T 10-10-2018 VF_A0349 80f24bb1a833a085b2ad11ae8f83c58a 259 SUPERFAMILY SSF53098 60 246 3.22E-32 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_A0349 80f24bb1a833a085b2ad11ae8f83c58a 259 SMART SM00479 65 245 2.3E-13 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_A0349 80f24bb1a833a085b2ad11ae8f83c58a 259 Pfam PF00929 Exonuclease 68 236 5.2E-9 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_A0349 80f24bb1a833a085b2ad11ae8f83c58a 259 Gene3D G3DSA:3.30.420.10 59 247 9.2E-29 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_0444 49fe68ce5d05a9275b32ef9f2a6f329a 413 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 10-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VF_0444 49fe68ce5d05a9275b32ef9f2a6f329a 413 Gene3D G3DSA:3.40.50.300 216 413 2.4E-50 T 10-10-2018 VF_0444 49fe68ce5d05a9275b32ef9f2a6f329a 413 SUPERFAMILY SSF52540 76 359 1.01E-66 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0444 49fe68ce5d05a9275b32ef9f2a6f329a 413 Gene3D G3DSA:3.40.50.300 1 211 2.0E-67 T 10-10-2018 VF_0444 49fe68ce5d05a9275b32ef9f2a6f329a 413 Hamap MF_00967 ATP-dependent RNA helicase SrmB [srmB]. 3 413 48.599 T 10-10-2018 IPR028621 ATP-dependent RNA helicase SrmB GO:0000027|GO:0004004 VF_0444 49fe68ce5d05a9275b32ef9f2a6f329a 413 Pfam PF00270 DEAD/DEAH box helicase 27 195 4.1E-43 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_0444 49fe68ce5d05a9275b32ef9f2a6f329a 413 Pfam PF00271 Helicase conserved C-terminal domain 234 341 3.5E-32 T 10-10-2018 IPR001650 Helicase, C-terminal VF_0444 49fe68ce5d05a9275b32ef9f2a6f329a 413 SMART SM00487 22 224 2.8E-54 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_0444 49fe68ce5d05a9275b32ef9f2a6f329a 413 SMART SM00490 260 341 1.4E-30 T 10-10-2018 IPR001650 Helicase, C-terminal VF_2575 30d06b6d4943d540d023bd6e7347e022 629 Gene3D G3DSA:3.50.50.60 1 228 1.1E-89 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2575 30d06b6d4943d540d023bd6e7347e022 629 Gene3D G3DSA:3.50.50.60 296 458 2.0E-55 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2575 30d06b6d4943d540d023bd6e7347e022 629 Gene3D G3DSA:1.10.150.570 569 622 1.2E-22 T 10-10-2018 VF_2575 30d06b6d4943d540d023bd6e7347e022 629 Pfam PF01134 Glucose inhibited division protein A 8 399 3.9E-170 T 10-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 VF_2575 30d06b6d4943d540d023bd6e7347e022 629 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 10-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 VF_2575 30d06b6d4943d540d023bd6e7347e022 629 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 6.0E-292 T 10-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 VF_2575 30d06b6d4943d540d023bd6e7347e022 629 SMART SM01228 546 617 2.2E-42 T 10-10-2018 VF_2575 30d06b6d4943d540d023bd6e7347e022 629 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 10-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 VF_2575 30d06b6d4943d540d023bd6e7347e022 629 SUPERFAMILY SSF51905 6 261 1.24E-49 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2575 30d06b6d4943d540d023bd6e7347e022 629 Gene3D G3DSA:1.10.10.1800 459 550 4.5E-32 T 10-10-2018 VF_2575 30d06b6d4943d540d023bd6e7347e022 629 Pfam PF13932 GidA associated domain 403 616 7.1E-76 T 10-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 VF_2575 30d06b6d4943d540d023bd6e7347e022 629 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 42.623 T 10-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 VF_1499 ec4b7f2641b05fc6957f33d8adc24dad 157 SUPERFAMILY SSF56925 18 156 1.67E-18 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VF_1499 ec4b7f2641b05fc6957f33d8adc24dad 157 Pfam PF13505 Outer membrane protein beta-barrel domain 5 154 9.8E-12 T 10-10-2018 IPR027385 Outer membrane protein beta-barrel VF_1499 ec4b7f2641b05fc6957f33d8adc24dad 157 Gene3D G3DSA:2.40.160.20 18 157 8.2E-23 T 10-10-2018 VF_1108 0906b186e60901a5d8b27e6cc503646e 301 SUPERFAMILY SSF49493 210 294 9.03E-20 T 10-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 VF_1108 0906b186e60901a5d8b27e6cc503646e 301 Gene3D G3DSA:1.10.287.110 1 118 2.1E-37 T 10-10-2018 IPR036869 Chaperone J-domain superfamily VF_1108 0906b186e60901a5d8b27e6cc503646e 301 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 10-10-2018 IPR018253 DnaJ domain, conserved site VF_1108 0906b186e60901a5d8b27e6cc503646e 301 PRINTS PR00625 DnaJ domain signature 7 25 3.0E-32 T 10-10-2018 IPR001623 DnaJ domain VF_1108 0906b186e60901a5d8b27e6cc503646e 301 PRINTS PR00625 DnaJ domain signature 42 62 3.0E-32 T 10-10-2018 IPR001623 DnaJ domain VF_1108 0906b186e60901a5d8b27e6cc503646e 301 PRINTS PR00625 DnaJ domain signature 25 40 3.0E-32 T 10-10-2018 IPR001623 DnaJ domain VF_1108 0906b186e60901a5d8b27e6cc503646e 301 PRINTS PR00625 DnaJ domain signature 62 81 3.0E-32 T 10-10-2018 IPR001623 DnaJ domain VF_1108 0906b186e60901a5d8b27e6cc503646e 301 Gene3D G3DSA:2.60.260.20 131 203 1.0E-19 T 10-10-2018 VF_1108 0906b186e60901a5d8b27e6cc503646e 301 Gene3D G3DSA:2.60.260.20 205 301 1.2E-26 T 10-10-2018 VF_1108 0906b186e60901a5d8b27e6cc503646e 301 Pfam PF00226 DnaJ domain 5 67 5.4E-29 T 10-10-2018 IPR001623 DnaJ domain VF_1108 0906b186e60901a5d8b27e6cc503646e 301 SUPERFAMILY SSF49493 130 218 2.35E-18 T 10-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 VF_1108 0906b186e60901a5d8b27e6cc503646e 301 Pfam PF01556 DnaJ C terminal domain 138 283 6.7E-38 T 10-10-2018 IPR002939 Chaperone DnaJ, C-terminal VF_1108 0906b186e60901a5d8b27e6cc503646e 301 SUPERFAMILY SSF46565 1 106 2.09E-36 T 10-10-2018 IPR036869 Chaperone J-domain superfamily VF_1108 0906b186e60901a5d8b27e6cc503646e 301 SMART SM00271 4 62 4.3E-33 T 10-10-2018 IPR001623 DnaJ domain VF_0565 f320260d41a73f954eb11d021adb8a21 244 SUPERFAMILY SSF64438 3 244 4.4E-84 T 10-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic VF_0565 f320260d41a73f954eb11d021adb8a21 244 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 19 242 5.7E-73 T 10-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase VF_0565 f320260d41a73f954eb11d021adb8a21 244 Gene3D G3DSA:3.60.140.10 1 243 8.3E-88 T 10-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily VF_0565 f320260d41a73f954eb11d021adb8a21 244 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 24 243 2.2E-62 T 10-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase VF_2380 deef06701e99575a846f9ae9bd2e2091 421 PIRSF PIRSF004925 41 420 3.8E-104 T 10-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter VF_2380 deef06701e99575a846f9ae9bd2e2091 421 SUPERFAMILY SSF103473 48 414 5.62E-31 T 10-10-2018 IPR036259 MFS transporter superfamily VF_2380 deef06701e99575a846f9ae9bd2e2091 421 Gene3D G3DSA:1.20.1250.20 228 417 5.5E-31 T 10-10-2018 VF_2380 deef06701e99575a846f9ae9bd2e2091 421 Gene3D G3DSA:1.20.1250.20 40 226 1.1E-17 T 10-10-2018 VF_2380 deef06701e99575a846f9ae9bd2e2091 421 Pfam PF12832 MFS_1 like family 58 402 5.3E-44 T 10-10-2018 IPR024989 Major facilitator superfamily associated domain VF_2552 6b0ab9f748d749fe5aaca67a0d40c454 329 Gene3D G3DSA:3.30.200.70 15 110 2.2E-120 T 10-10-2018 VF_2552 6b0ab9f748d749fe5aaca67a0d40c454 329 Gene3D G3DSA:1.10.510.10 62 259 2.2E-120 T 10-10-2018 VF_2552 6b0ab9f748d749fe5aaca67a0d40c454 329 Gene3D G3DSA:1.20.1270.170 151 308 2.2E-120 T 10-10-2018 VF_2552 6b0ab9f748d749fe5aaca67a0d40c454 329 SUPERFAMILY SSF56112 8 329 6.71E-87 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily VF_2552 6b0ab9f748d749fe5aaca67a0d40c454 329 Pfam PF01636 Phosphotransferase enzyme family 38 254 9.5E-40 T 10-10-2018 IPR002575 Aminoglycoside phosphotransferase VF_2552 6b0ab9f748d749fe5aaca67a0d40c454 329 Hamap MF_01497 Stress response kinase A [srkA]. 6 319 45.775 T 10-10-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 VF_0510 c302633bfdb85c89d515c10214583b80 71 Pfam PF04964 Flp/Fap pilin component 16 61 1.8E-11 T 10-10-2018 IPR007047 Flp/Fap pilin component VF_2494 816207a9035a024df85bbf3a9a799334 698 Pfam PF13899 Thioredoxin-like 589 670 2.9E-9 T 10-10-2018 VF_2494 816207a9035a024df85bbf3a9a799334 698 Pfam PF11412 Disulphide bond corrector protein DsbC 59 164 8.4E-17 T 10-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain VF_2494 816207a9035a024df85bbf3a9a799334 698 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 309 514 1.6E-13 T 10-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 VF_2494 816207a9035a024df85bbf3a9a799334 698 SUPERFAMILY SSF52833 582 674 4.32E-12 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_2494 816207a9035a024df85bbf3a9a799334 698 Gene3D G3DSA:3.40.30.10 581 692 3.7E-9 T 10-10-2018 VF_2209 f891053b3d93aa26f24ef12479fa3f67 316 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 316 36.949 T 10-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 VF_2209 f891053b3d93aa26f24ef12479fa3f67 316 Gene3D G3DSA:3.40.50.150 10 315 9.4E-101 T 10-10-2018 VF_2209 f891053b3d93aa26f24ef12479fa3f67 316 SUPERFAMILY SSF53335 7 316 7.44E-43 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_2209 f891053b3d93aa26f24ef12479fa3f67 316 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 2 315 4.2E-120 T 10-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 VF_2209 f891053b3d93aa26f24ef12479fa3f67 316 Gene3D G3DSA:1.10.150.170 112 218 9.4E-101 T 10-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 VF_2209 f891053b3d93aa26f24ef12479fa3f67 316 Pfam PF01795 MraW methylase family 5 315 2.0E-111 T 10-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 VF_2209 f891053b3d93aa26f24ef12479fa3f67 316 PIRSF PIRSF004486 1 316 4.7E-100 T 10-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 VF_2209 f891053b3d93aa26f24ef12479fa3f67 316 SUPERFAMILY SSF81799 113 216 1.31E-29 T 10-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 VF_A0275 a57bb5e6fe7a263e3000cdc0403c63fc 78 Pfam PF11869 Protein of unknown function (DUF3389) 1 74 1.9E-32 T 10-10-2018 IPR021811 Protein of unknown function DUF3389 VF_A1038 7577046d3e6c679da03d2f2c6af9fc19 630 Gene3D G3DSA:3.30.450.40 1 168 1.9E-10 T 10-10-2018 IPR029016 GAF-like domain superfamily VF_A1038 7577046d3e6c679da03d2f2c6af9fc19 630 Pfam PF00990 Diguanylate cyclase, GGDEF domain 204 339 2.3E-9 T 10-10-2018 IPR000160 GGDEF domain VF_A1038 7577046d3e6c679da03d2f2c6af9fc19 630 Gene3D G3DSA:3.30.70.270 191 353 9.5E-12 T 10-10-2018 VF_A1038 7577046d3e6c679da03d2f2c6af9fc19 630 Pfam PF00563 EAL domain 374 606 1.2E-67 T 10-10-2018 IPR001633 EAL domain VF_A1038 7577046d3e6c679da03d2f2c6af9fc19 630 SUPERFAMILY SSF55781 19 165 3.92E-16 T 10-10-2018 VF_A1038 7577046d3e6c679da03d2f2c6af9fc19 630 Gene3D G3DSA:3.20.20.450 368 619 8.5E-85 T 10-10-2018 IPR035919 EAL domain superfamily VF_A1038 7577046d3e6c679da03d2f2c6af9fc19 630 SMART SM00052 366 611 4.4E-91 T 10-10-2018 IPR001633 EAL domain VF_A1038 7577046d3e6c679da03d2f2c6af9fc19 630 SUPERFAMILY SSF55073 209 350 1.73E-10 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A1038 7577046d3e6c679da03d2f2c6af9fc19 630 SMART SM00267 192 355 1.5E-4 T 10-10-2018 IPR000160 GGDEF domain VF_A1038 7577046d3e6c679da03d2f2c6af9fc19 630 SMART SM00065 14 165 0.0019 T 10-10-2018 IPR003018 GAF domain GO:0005515 VF_A1038 7577046d3e6c679da03d2f2c6af9fc19 630 SUPERFAMILY SSF141868 372 619 1.96E-82 T 10-10-2018 IPR035919 EAL domain superfamily VF_2415 0cfd93f37ac1862a08470a3cbe69b9b8 122 SUPERFAMILY SSF54736 51 122 1.74E-24 T 10-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like VF_2415 0cfd93f37ac1862a08470a3cbe69b9b8 122 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 49 5.8E-16 T 10-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2415 0cfd93f37ac1862a08470a3cbe69b9b8 122 SUPERFAMILY SSF48300 4 58 6.28E-15 T 10-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2415 0cfd93f37ac1862a08470a3cbe69b9b8 122 Gene3D G3DSA:1.20.5.710 2 51 6.6E-23 T 10-10-2018 VF_2415 0cfd93f37ac1862a08470a3cbe69b9b8 122 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 122 3.9E-47 T 10-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2415 0cfd93f37ac1862a08470a3cbe69b9b8 122 Gene3D G3DSA:3.30.1390.10 52 122 5.9E-31 T 10-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like VF_2415 0cfd93f37ac1862a08470a3cbe69b9b8 122 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 56 122 4.6E-31 T 10-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2415 0cfd93f37ac1862a08470a3cbe69b9b8 122 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 122 24.778 T 10-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2415 0cfd93f37ac1862a08470a3cbe69b9b8 122 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 57 122 6.0E-19 T 10-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_A0331 863831337a6edfebe72d243a18805a51 759 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 735 755 4.0E-5 T 10-10-2018 IPR020008 GlyGly-CTERM domain VF_A0331 863831337a6edfebe72d243a18805a51 759 Pfam PF01483 Proprotein convertase P-domain 630 713 4.5E-16 T 10-10-2018 IPR002884 P domain GO:0004252|GO:0006508 VF_A0331 863831337a6edfebe72d243a18805a51 759 SUPERFAMILY SSF49785 609 713 4.68E-17 T 10-10-2018 IPR008979 Galactose-binding-like domain superfamily VF_A0331 863831337a6edfebe72d243a18805a51 759 SUPERFAMILY SSF55486 171 484 2.52E-39 T 10-10-2018 VF_A0331 863831337a6edfebe72d243a18805a51 759 Gene3D G3DSA:2.60.120.260 598 743 7.9E-14 T 10-10-2018 IPR008979 Galactose-binding-like domain superfamily VF_2286 d11b5a7dfe538aaf378cb97e52063592 338 Pfam PF00579 tRNA synthetases class I (W and Y) 3 289 1.5E-77 T 10-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_2286 d11b5a7dfe538aaf378cb97e52063592 338 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 335 40.578 T 10-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 VF_2286 d11b5a7dfe538aaf378cb97e52063592 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 5.1E-26 T 10-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VF_2286 d11b5a7dfe538aaf378cb97e52063592 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 198 208 5.1E-26 T 10-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VF_2286 d11b5a7dfe538aaf378cb97e52063592 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 142 163 5.1E-26 T 10-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VF_2286 d11b5a7dfe538aaf378cb97e52063592 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 5.1E-26 T 10-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VF_2286 d11b5a7dfe538aaf378cb97e52063592 338 Gene3D G3DSA:3.40.50.620 5 333 1.1E-139 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_2286 d11b5a7dfe538aaf378cb97e52063592 338 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 334 1.4E-108 T 10-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VF_2286 d11b5a7dfe538aaf378cb97e52063592 338 Gene3D G3DSA:1.10.240.10 191 304 1.1E-139 T 10-10-2018 VF_2286 d11b5a7dfe538aaf378cb97e52063592 338 SUPERFAMILY SSF52374 5 334 1.46E-91 T 10-10-2018 VF_0620 e3022203a3d130943f127a572fbad6ee 171 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 13 169 4.0E-40 T 10-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VF_0620 e3022203a3d130943f127a572fbad6ee 171 SUPERFAMILY SSF46565 1 72 3.66E-16 T 10-10-2018 IPR036869 Chaperone J-domain superfamily VF_0620 e3022203a3d130943f127a572fbad6ee 171 Gene3D G3DSA:1.10.287.110 1 79 6.7E-22 T 10-10-2018 IPR036869 Chaperone J-domain superfamily VF_0620 e3022203a3d130943f127a572fbad6ee 171 Gene3D G3DSA:1.20.1280.20 80 171 1.2E-27 T 10-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VF_0620 e3022203a3d130943f127a572fbad6ee 171 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 170 25.209 T 10-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VF_0620 e3022203a3d130943f127a572fbad6ee 171 SUPERFAMILY SSF47144 78 170 3.79E-25 T 10-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VF_0620 e3022203a3d130943f127a572fbad6ee 171 SMART SM00271 1 66 1.5E-6 T 10-10-2018 IPR001623 DnaJ domain VF_0620 e3022203a3d130943f127a572fbad6ee 171 Pfam PF07743 HSCB C-terminal oligomerisation domain 87 163 5.1E-18 T 10-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VF_A0117 71301ff7966b0715703254e85ef98bb6 299 SUPERFAMILY SSF103481 216 293 1.11E-7 T 10-10-2018 VF_A0117 71301ff7966b0715703254e85ef98bb6 299 SUPERFAMILY SSF103481 53 153 8.76E-11 T 10-10-2018 VF_A0117 71301ff7966b0715703254e85ef98bb6 299 Pfam PF00892 EamA-like transporter family 162 291 3.1E-11 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_A0117 71301ff7966b0715703254e85ef98bb6 299 Pfam PF00892 EamA-like transporter family 17 149 8.7E-13 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_0550 07f0e66f23d18ceceb2a66b9c47bdf0e 175 Gene3D G3DSA:2.40.30.60 1 93 9.6E-30 T 10-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 VF_0550 07f0e66f23d18ceceb2a66b9c47bdf0e 175 Gene3D G3DSA:2.30.30.240 94 175 4.4E-31 T 10-10-2018 VF_0550 07f0e66f23d18ceceb2a66b9c47bdf0e 175 SUPERFAMILY SSF50346 99 175 3.73E-20 T 10-10-2018 IPR011033 PRC-barrel-like superfamily VF_0550 07f0e66f23d18ceceb2a66b9c47bdf0e 175 Pfam PF01782 RimM N-terminal domain 9 89 3.7E-23 T 10-10-2018 IPR002676 RimM, N-terminal GO:0006364 VF_0550 07f0e66f23d18ceceb2a66b9c47bdf0e 175 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 8 175 6.3E-57 T 10-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 VF_0550 07f0e66f23d18ceceb2a66b9c47bdf0e 175 SUPERFAMILY SSF50447 6 93 9.89E-23 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VF_0550 07f0e66f23d18ceceb2a66b9c47bdf0e 175 Pfam PF05239 PRC-barrel domain 96 170 1.2E-12 T 10-10-2018 IPR027275 PRC-barrel domain VF_0550 07f0e66f23d18ceceb2a66b9c47bdf0e 175 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 7 175 23.961 T 10-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 VF_1315 5abaf508150d35278cd5c0717dee6d4a 372 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 43 366 5.3E-154 T 10-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 VF_1315 5abaf508150d35278cd5c0717dee6d4a 372 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1315 5abaf508150d35278cd5c0717dee6d4a 372 SUPERFAMILY SSF52540 13 252 7.51E-88 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1315 5abaf508150d35278cd5c0717dee6d4a 372 Gene3D G3DSA:3.40.50.300 12 230 7.6E-69 T 10-10-2018 VF_1315 5abaf508150d35278cd5c0717dee6d4a 372 SUPERFAMILY SSF50331 246 366 1.13E-8 T 10-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VF_1315 5abaf508150d35278cd5c0717dee6d4a 372 Gene3D G3DSA:2.40.50.940 231 293 4.0E-11 T 10-10-2018 VF_1315 5abaf508150d35278cd5c0717dee6d4a 372 Gene3D G3DSA:2.40.50.140 294 304 4.0E-11 T 10-10-2018 VF_1315 5abaf508150d35278cd5c0717dee6d4a 372 SMART SM00382 37 220 2.7E-19 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1315 5abaf508150d35278cd5c0717dee6d4a 372 Pfam PF00005 ABC transporter 29 169 1.8E-35 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1315 5abaf508150d35278cd5c0717dee6d4a 372 Pfam PF08402 TOBE domain 287 366 3.8E-11 T 10-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 VF_0362 29d99846788ce8e002c862273da880ff 574 SMART SM00382 314 435 0.0029 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0362 29d99846788ce8e002c862273da880ff 574 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 42 148 9.1E-25 T 10-10-2018 IPR007831 General secretory system II, protein E, N-terminal VF_0362 29d99846788ce8e002c862273da880ff 574 Pfam PF00437 Type II/IV secretion system protein 191 453 7.1E-77 T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_0362 29d99846788ce8e002c862273da880ff 574 Gene3D G3DSA:3.40.50.300 289 566 1.9E-99 T 10-10-2018 VF_0362 29d99846788ce8e002c862273da880ff 574 Gene3D G3DSA:3.30.300.160 63 145 2.2E-7 T 10-10-2018 VF_0362 29d99846788ce8e002c862273da880ff 574 SUPERFAMILY SSF52540 180 558 1.84E-92 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0362 29d99846788ce8e002c862273da880ff 574 SUPERFAMILY SSF160246 4 145 2.62E-39 T 10-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily VF_0362 29d99846788ce8e002c862273da880ff 574 Gene3D G3DSA:3.30.450.90 147 286 5.0E-43 T 10-10-2018 VF_0362 29d99846788ce8e002c862273da880ff 574 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 381 395 - T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_A1012 cb109fbd9991ea841ffa81f3749b723e 299 Pfam PF00072 Response regulator receiver domain 7 116 2.9E-26 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A1012 cb109fbd9991ea841ffa81f3749b723e 299 Gene3D G3DSA:3.40.50.2300 4 139 5.4E-37 T 10-10-2018 VF_A1012 cb109fbd9991ea841ffa81f3749b723e 299 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 129 295 3.0E-45 T 10-10-2018 IPR000160 GGDEF domain VF_A1012 cb109fbd9991ea841ffa81f3749b723e 299 SUPERFAMILY SSF52172 4 127 1.21E-36 T 10-10-2018 IPR011006 CheY-like superfamily VF_A1012 cb109fbd9991ea841ffa81f3749b723e 299 Pfam PF00990 Diguanylate cyclase, GGDEF domain 133 292 3.0E-43 T 10-10-2018 IPR000160 GGDEF domain VF_A1012 cb109fbd9991ea841ffa81f3749b723e 299 SMART SM00267 122 297 5.8E-47 T 10-10-2018 IPR000160 GGDEF domain VF_A1012 cb109fbd9991ea841ffa81f3749b723e 299 SMART SM00448 5 116 4.5E-34 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A1012 cb109fbd9991ea841ffa81f3749b723e 299 SUPERFAMILY SSF55073 138 295 1.73E-42 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A1012 cb109fbd9991ea841ffa81f3749b723e 299 Gene3D G3DSA:3.30.70.270 140 298 1.2E-46 T 10-10-2018 VF_1754 4102404717f1934460f74efad780ca74 686 Pfam PF01588 Putative tRNA binding domain 591 683 2.8E-26 T 10-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 VF_1754 4102404717f1934460f74efad780ca74 686 Hamap MF_00098 Methionine--tRNA ligase [metG]. 6 545 41.546 T 10-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VF_1754 4102404717f1934460f74efad780ca74 686 Gene3D G3DSA:1.10.730.10 389 526 7.5E-35 T 10-10-2018 VF_1754 4102404717f1934460f74efad780ca74 686 SUPERFAMILY SSF52374 4 387 5.63E-102 T 10-10-2018 VF_1754 4102404717f1934460f74efad780ca74 686 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 1.5E-25 T 10-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VF_1754 4102404717f1934460f74efad780ca74 686 PRINTS PR01041 Methionyl-tRNA synthetase signature 291 306 1.5E-25 T 10-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VF_1754 4102404717f1934460f74efad780ca74 686 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 1.5E-25 T 10-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VF_1754 4102404717f1934460f74efad780ca74 686 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 1.5E-25 T 10-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VF_1754 4102404717f1934460f74efad780ca74 686 PRINTS PR01041 Methionyl-tRNA synthetase signature 251 262 1.5E-25 T 10-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VF_1754 4102404717f1934460f74efad780ca74 686 PRINTS PR01041 Methionyl-tRNA synthetase signature 384 395 1.5E-25 T 10-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VF_1754 4102404717f1934460f74efad780ca74 686 Gene3D G3DSA:3.40.50.620 8 384 6.5E-162 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_1754 4102404717f1934460f74efad780ca74 686 Gene3D G3DSA:2.20.28.20 142 176 6.5E-162 T 10-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VF_1754 4102404717f1934460f74efad780ca74 686 Gene3D G3DSA:2.40.50.140 575 686 1.2E-34 T 10-10-2018 VF_1754 4102404717f1934460f74efad780ca74 686 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_1754 4102404717f1934460f74efad780ca74 686 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 551 685 1.2E-46 T 10-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VF_1754 4102404717f1934460f74efad780ca74 686 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 8 535 4.5E-200 T 10-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VF_1754 4102404717f1934460f74efad780ca74 686 SUPERFAMILY SSF47323 389 547 3.05E-44 T 10-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_1754 4102404717f1934460f74efad780ca74 686 Pfam PF09334 tRNA synthetases class I (M) 8 396 2.2E-165 T 10-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_1754 4102404717f1934460f74efad780ca74 686 SUPERFAMILY SSF50249 585 685 4.41E-32 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1754 4102404717f1934460f74efad780ca74 686 SUPERFAMILY SSF57770 142 176 4.97E-13 T 10-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VF_1287 bc98900c7cce7493dc4fd81fa8018a03 718 Gene3D G3DSA:3.30.2130.30 19 268 4.1E-134 T 10-10-2018 VF_1287 bc98900c7cce7493dc4fd81fa8018a03 718 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 208 219 - T 10-10-2018 IPR000241 Putative RNA methylase domain VF_1287 bc98900c7cce7493dc4fd81fa8018a03 718 SUPERFAMILY SSF53335 162 384 1.61E-38 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_1287 bc98900c7cce7493dc4fd81fa8018a03 718 SMART SM00981 69 167 3.5E-17 T 10-10-2018 IPR004114 THUMP domain GO:0003723 VF_1287 bc98900c7cce7493dc4fd81fa8018a03 718 Pfam PF01170 Putative RNA methylase family UPF0020 175 387 1.8E-62 T 10-10-2018 IPR000241 Putative RNA methylase domain VF_1287 bc98900c7cce7493dc4fd81fa8018a03 718 Gene3D G3DSA:3.30.750.80 406 497 8.7E-34 T 10-10-2018 VF_1287 bc98900c7cce7493dc4fd81fa8018a03 718 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 453 672 5.3E-24 T 10-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 VF_1287 bc98900c7cce7493dc4fd81fa8018a03 718 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 17 716 31.646 T 10-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 VF_1287 bc98900c7cce7493dc4fd81fa8018a03 718 SUPERFAMILY SSF53335 409 717 1.21E-67 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_1287 bc98900c7cce7493dc4fd81fa8018a03 718 PIRSF PIRSF037618 12 717 1.9E-290 T 10-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 VF_1287 bc98900c7cce7493dc4fd81fa8018a03 718 Pfam PF02926 THUMP domain 43 164 4.1E-5 T 10-10-2018 IPR004114 THUMP domain GO:0003723 VF_1287 bc98900c7cce7493dc4fd81fa8018a03 718 Gene3D G3DSA:3.40.50.150 182 384 4.1E-134 T 10-10-2018 VF_1287 bc98900c7cce7493dc4fd81fa8018a03 718 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 318 324 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VF_1287 bc98900c7cce7493dc4fd81fa8018a03 718 Gene3D G3DSA:3.40.50.150 498 716 5.5E-73 T 10-10-2018 VF_2553 3e772ee2146d40aa79f49f25080e464e 200 Pfam PF01323 DSBA-like thioredoxin domain 41 178 1.6E-22 T 10-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 VF_2553 3e772ee2146d40aa79f49f25080e464e 200 PIRSF PIRSF001488 2 200 1.2E-64 T 10-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL VF_2553 3e772ee2146d40aa79f49f25080e464e 200 SUPERFAMILY SSF52833 21 199 5.81E-43 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_2553 3e772ee2146d40aa79f49f25080e464e 200 Gene3D G3DSA:3.40.30.10 18 200 6.7E-49 T 10-10-2018 VF_A1118 353aa9699cf58b2eb997e7a782f637dd 230 Pfam PF01592 NifU-like N terminal domain 51 101 4.7E-5 T 10-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 VF_A1118 353aa9699cf58b2eb997e7a782f637dd 230 SUPERFAMILY SSF82649 56 101 1.44E-7 T 10-10-2018 VF_A1118 353aa9699cf58b2eb997e7a782f637dd 230 Gene3D G3DSA:3.90.1010.10 30 116 9.6E-7 T 10-10-2018 VF_A0857 cdbc8e5c82c6f79a0437e018569deb5a 113 SUPERFAMILY SSF46785 23 104 2.41E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0857 cdbc8e5c82c6f79a0437e018569deb5a 113 Gene3D G3DSA:1.10.10.10 6 112 1.4E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0857 cdbc8e5c82c6f79a0437e018569deb5a 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 66 81 2.0E-7 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_A0857 cdbc8e5c82c6f79a0437e018569deb5a 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 30 45 2.0E-7 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_A0857 cdbc8e5c82c6f79a0437e018569deb5a 113 Pfam PF01022 Bacterial regulatory protein, arsR family 35 84 4.6E-13 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_A0857 cdbc8e5c82c6f79a0437e018569deb5a 113 SMART SM00418 28 106 2.8E-13 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_0700 0b39596b6716d3b49a76924af01052c5 372 Gene3D G3DSA:3.40.430.10 146 371 2.1E-64 T 10-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 VF_0700 0b39596b6716d3b49a76924af01052c5 372 PIRSF PIRSF006769 2 372 6.8E-120 T 10-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 VF_0700 0b39596b6716d3b49a76924af01052c5 372 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 11 366 1.2E-123 T 10-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 VF_0700 0b39596b6716d3b49a76924af01052c5 372 SUPERFAMILY SSF53927 7 148 6.36E-46 T 10-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VF_0700 0b39596b6716d3b49a76924af01052c5 372 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 54 92 - T 10-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 VF_0700 0b39596b6716d3b49a76924af01052c5 372 SUPERFAMILY SSF53597 148 367 7.16E-53 T 10-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 VF_0700 0b39596b6716d3b49a76924af01052c5 372 Gene3D G3DSA:3.40.140.10 2 145 3.1E-44 T 10-10-2018 VF_0700 0b39596b6716d3b49a76924af01052c5 372 Pfam PF01872 RibD C-terminal domain 151 364 8.7E-48 T 10-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 VF_0700 0b39596b6716d3b49a76924af01052c5 372 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 150 369 3.9E-58 T 10-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 VF_0700 0b39596b6716d3b49a76924af01052c5 372 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 6 103 1.9E-21 T 10-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain VF_0178 f5903d2b4abcbdd1cda727831d9ad544 250 Pfam PF02348 Cytidylyltransferase 5 219 2.9E-50 T 10-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 VF_0178 f5903d2b4abcbdd1cda727831d9ad544 250 Gene3D G3DSA:3.90.550.10 3 250 3.1E-77 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0178 f5903d2b4abcbdd1cda727831d9ad544 250 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 239 7.2E-63 T 10-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 VF_0178 f5903d2b4abcbdd1cda727831d9ad544 250 SUPERFAMILY SSF53448 1 248 1.04E-55 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0178 f5903d2b4abcbdd1cda727831d9ad544 250 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 246 36.746 T 10-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 VF_A0359 eb650d5a61ea3050805212878af18305 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 8.8E-9 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_A0359 eb650d5a61ea3050805212878af18305 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 8.8E-9 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_A0359 eb650d5a61ea3050805212878af18305 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 1.8E-14 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_A0359 eb650d5a61ea3050805212878af18305 203 SUPERFAMILY SSF48498 82 171 1.11E-7 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VF_A0359 eb650d5a61ea3050805212878af18305 203 Gene3D G3DSA:1.10.10.60 3 59 9.7E-18 T 10-10-2018 VF_A0359 eb650d5a61ea3050805212878af18305 203 SUPERFAMILY SSF46689 5 86 5.99E-16 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0359 eb650d5a61ea3050805212878af18305 203 Gene3D G3DSA:1.10.357.10 64 201 1.3E-27 T 10-10-2018 VF_A0111 2fa2c3d487376340a4485061c9576ca7 308 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0111 2fa2c3d487376340a4485061c9576ca7 308 Gene3D G3DSA:3.40.50.300 1 241 4.1E-70 T 10-10-2018 VF_A0111 2fa2c3d487376340a4485061c9576ca7 308 SMART SM00382 30 211 1.5E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0111 2fa2c3d487376340a4485061c9576ca7 308 Pfam PF00005 ABC transporter 22 165 1.4E-33 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0111 2fa2c3d487376340a4485061c9576ca7 308 SUPERFAMILY SSF52540 4 228 1.62E-66 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0044 42327ace5354aa608cd5c1477bfd328c 357 Pfam PF13533 Biotin-lipoyl like 68 113 3.8E-10 T 10-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VF_A0044 42327ace5354aa608cd5c1477bfd328c 357 Pfam PF13437 HlyD family secretion protein 163 264 5.2E-10 T 10-10-2018 VF_A0044 42327ace5354aa608cd5c1477bfd328c 357 Gene3D G3DSA:2.40.420.20 279 348 9.7E-69 T 10-10-2018 VF_A0044 42327ace5354aa608cd5c1477bfd328c 357 Gene3D G3DSA:2.40.50.100 65 197 9.7E-69 T 10-10-2018 VF_A0044 42327ace5354aa608cd5c1477bfd328c 357 SUPERFAMILY SSF111369 57 261 4.05E-30 T 10-10-2018 VF_A0044 42327ace5354aa608cd5c1477bfd328c 357 Gene3D G3DSA:1.10.287.470 99 158 9.7E-69 T 10-10-2018 VF_A0044 42327ace5354aa608cd5c1477bfd328c 357 Gene3D G3DSA:2.40.30.170 58 278 9.7E-69 T 10-10-2018 VF_A0044 42327ace5354aa608cd5c1477bfd328c 357 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 351 3.7E-69 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 SUPERFAMILY SSF82866 302 495 1.11E-34 T 10-10-2018 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 PRINTS PR00702 Acriflavin resistance protein family signature 42 60 2.1E-27 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 PRINTS PR00702 Acriflavin resistance protein family signature 468 491 2.1E-27 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 PRINTS PR00702 Acriflavin resistance protein family signature 443 466 2.1E-27 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 PRINTS PR00702 Acriflavin resistance protein family signature 390 414 2.1E-27 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 PRINTS PR00702 Acriflavin resistance protein family signature 547 564 2.1E-27 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 PRINTS PR00702 Acriflavin resistance protein family signature 14 38 2.1E-27 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.1E-27 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 SUPERFAMILY SSF82866 798 1021 1.44E-46 T 10-10-2018 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 SUPERFAMILY SSF82693 564 610 3.14E-5 T 10-10-2018 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 Pfam PF00873 AcrB/AcrD/AcrF family 8 1018 1.8E-175 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 SUPERFAMILY SSF82714 188 271 1.57E-9 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 SUPERFAMILY SSF82693 44 139 6.67E-23 T 10-10-2018 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 Gene3D G3DSA:3.30.2090.10 712 802 5.7E-258 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 Gene3D G3DSA:3.30.70.1320 140 332 5.7E-258 T 10-10-2018 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 Gene3D G3DSA:3.30.70.1430 44 810 5.7E-258 T 10-10-2018 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 Gene3D G3DSA:1.20.1640.10 14 510 5.7E-258 T 10-10-2018 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 Gene3D G3DSA:1.20.1640.10 511 1014 5.7E-258 T 10-10-2018 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 Gene3D G3DSA:3.30.70.1430 562 660 5.7E-258 T 10-10-2018 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 SUPERFAMILY SSF82693 140 327 4.24E-18 T 10-10-2018 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 Gene3D G3DSA:3.30.2090.10 183 275 5.7E-258 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 Gene3D G3DSA:3.30.70.1440 661 862 5.7E-258 T 10-10-2018 VF_1184 1bffa804cf6006e7bfc7801f1ce17d8e 1025 SUPERFAMILY SSF82714 718 794 7.32E-9 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_1260 ef680d7dc53cea7c12b4a81afbee8f3d 186 SUPERFAMILY SSF46689 3 72 1.3E-14 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1260 ef680d7dc53cea7c12b4a81afbee8f3d 186 Gene3D G3DSA:1.10.357.10 1 184 7.6E-29 T 10-10-2018 VF_1260 ef680d7dc53cea7c12b4a81afbee8f3d 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 7.1E-6 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_1260 ef680d7dc53cea7c12b4a81afbee8f3d 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 7.1E-6 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_1260 ef680d7dc53cea7c12b4a81afbee8f3d 186 ProSitePatterns PS01081 TetR-type HTH domain signature. 21 52 - T 10-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VF_1260 ef680d7dc53cea7c12b4a81afbee8f3d 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 53 1.2E-13 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_1260 ef680d7dc53cea7c12b4a81afbee8f3d 186 SUPERFAMILY SSF48498 81 182 2.76E-5 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VF_0115 41b5d5380687836603267175360c44ba 434 SMART SM00304 173 225 6.1E-8 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_0115 41b5d5380687836603267175360c44ba 434 Gene3D G3DSA:1.10.287.130 171 281 6.1E-24 T 10-10-2018 VF_0115 41b5d5380687836603267175360c44ba 434 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 327 433 8.2E-22 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0115 41b5d5380687836603267175360c44ba 434 Pfam PF00672 HAMP domain 176 221 1.2E-6 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_0115 41b5d5380687836603267175360c44ba 434 SMART SM00387 325 434 3.8E-31 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0115 41b5d5380687836603267175360c44ba 434 SMART SM00388 226 286 5.2E-9 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_0115 41b5d5380687836603267175360c44ba 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 362 376 6.7E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0115 41b5d5380687836603267175360c44ba 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 413 6.7E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0115 41b5d5380687836603267175360c44ba 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 390 6.7E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0115 41b5d5380687836603267175360c44ba 434 Pfam PF00512 His Kinase A (phospho-acceptor) domain 229 280 7.7E-9 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_0115 41b5d5380687836603267175360c44ba 434 SUPERFAMILY SSF55874 288 433 6.81E-34 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0115 41b5d5380687836603267175360c44ba 434 SUPERFAMILY SSF47384 219 281 1.1E-11 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_0115 41b5d5380687836603267175360c44ba 434 Gene3D G3DSA:3.30.565.10 288 434 2.0E-37 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0115 41b5d5380687836603267175360c44ba 434 SUPERFAMILY SSF158472 177 222 3.66E-5 T 10-10-2018 VF_1316 43d59d2d8a0f970cb16e5f78217e7c43 285 Gene3D G3DSA:1.10.3720.10 6 277 7.5E-56 T 10-10-2018 IPR035906 MetI-like superfamily VF_1316 43d59d2d8a0f970cb16e5f78217e7c43 285 SUPERFAMILY SSF161098 8 274 1.78E-55 T 10-10-2018 IPR035906 MetI-like superfamily VF_1316 43d59d2d8a0f970cb16e5f78217e7c43 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 281 4.2E-19 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_2026 30e3caab8614e3cc2e42a834ff2126be 314 Gene3D G3DSA:3.30.1920.10 188 247 3.8E-32 T 10-10-2018 IPR023399 Baseplate-like, two-layer sandwich fold VF_2026 30e3caab8614e3cc2e42a834ff2126be 314 Gene3D G3DSA:3.55.50.10 81 163 3.8E-32 T 10-10-2018 VF_2026 30e3caab8614e3cc2e42a834ff2126be 314 Gene3D G3DSA:2.30.300.10 18 299 3.8E-32 T 10-10-2018 VF_2026 30e3caab8614e3cc2e42a834ff2126be 314 SUPERFAMILY SSF69279 4 162 2.04E-25 T 10-10-2018 VF_2026 30e3caab8614e3cc2e42a834ff2126be 314 SUPERFAMILY SSF69279 172 307 7.94E-24 T 10-10-2018 VF_1633 9df2e2a23426089a733861ef4d2d247d 280 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 2.5E-20 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_1633 9df2e2a23426089a733861ef4d2d247d 280 Pfam PF07840 FadR C-terminal domain 72 275 1.3E-68 T 10-10-2018 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 VF_1633 9df2e2a23426089a733861ef4d2d247d 280 SUPERFAMILY SSF48008 79 271 2.22E-56 T 10-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VF_1633 9df2e2a23426089a733861ef4d2d247d 280 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 2 276 3.0E-113 T 10-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 VF_1633 9df2e2a23426089a733861ef4d2d247d 280 Gene3D G3DSA:1.20.120.530 156 279 1.3E-22 T 10-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VF_1633 9df2e2a23426089a733861ef4d2d247d 280 Gene3D G3DSA:1.20.120.530 80 152 2.4E-6 T 10-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VF_1633 9df2e2a23426089a733861ef4d2d247d 280 SMART SM00345 12 71 1.6E-22 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_1633 9df2e2a23426089a733861ef4d2d247d 280 SUPERFAMILY SSF46785 10 74 5.96E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1633 9df2e2a23426089a733861ef4d2d247d 280 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 3.5E-9 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_1633 9df2e2a23426089a733861ef4d2d247d 280 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 3.5E-9 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_1633 9df2e2a23426089a733861ef4d2d247d 280 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 280 133.287 T 10-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 VF_1633 9df2e2a23426089a733861ef4d2d247d 280 Gene3D G3DSA:1.10.10.10 1 79 3.0E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0546 64bf242cc03122f6e4864f82c2cadbfb 434 SMART SM01091 352 430 2.0E-22 T 10-10-2018 IPR005170 Transporter-associated domain VF_0546 64bf242cc03122f6e4864f82c2cadbfb 434 SUPERFAMILY SSF54631 202 339 3.41E-24 T 10-10-2018 VF_0546 64bf242cc03122f6e4864f82c2cadbfb 434 Pfam PF01595 Domain of unknown function DUF21 23 191 1.3E-50 T 10-10-2018 IPR002550 CNNM, transmembrane domain VF_0546 64bf242cc03122f6e4864f82c2cadbfb 434 SUPERFAMILY SSF56176 349 431 1.55E-19 T 10-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VF_0546 64bf242cc03122f6e4864f82c2cadbfb 434 Gene3D G3DSA:3.10.580.10 211 340 6.5E-43 T 10-10-2018 VF_0546 64bf242cc03122f6e4864f82c2cadbfb 434 Gene3D G3DSA:3.30.465.10 349 428 1.8E-26 T 10-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VF_0546 64bf242cc03122f6e4864f82c2cadbfb 434 Pfam PF03471 Transporter associated domain 354 426 7.6E-16 T 10-10-2018 IPR005170 Transporter-associated domain VF_0546 64bf242cc03122f6e4864f82c2cadbfb 434 Pfam PF00571 CBS domain 289 336 3.3E-4 T 10-10-2018 IPR000644 CBS domain VF_A0588 419d3858edfadd3a35d3da82ab6306b5 184 SUPERFAMILY SSF103088 61 177 4.05E-35 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A0588 419d3858edfadd3a35d3da82ab6306b5 184 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 119 136 3.7E-5 T 10-10-2018 VF_A0588 419d3858edfadd3a35d3da82ab6306b5 184 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 157 177 3.7E-5 T 10-10-2018 VF_A0588 419d3858edfadd3a35d3da82ab6306b5 184 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 137 156 3.7E-5 T 10-10-2018 VF_A0588 419d3858edfadd3a35d3da82ab6306b5 184 Gene3D G3DSA:3.30.1330.60 34 180 2.1E-41 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A0588 419d3858edfadd3a35d3da82ab6306b5 184 PRINTS PR01021 OMPA domain signature 104 119 8.6E-11 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A0588 419d3858edfadd3a35d3da82ab6306b5 184 PRINTS PR01021 OMPA domain signature 74 96 8.6E-11 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A0588 419d3858edfadd3a35d3da82ab6306b5 184 PRINTS PR01021 OMPA domain signature 119 135 8.6E-11 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A0588 419d3858edfadd3a35d3da82ab6306b5 184 Pfam PF00691 OmpA family 74 168 8.4E-24 T 10-10-2018 IPR006665 OmpA-like domain VF_2345 d6422c014394eb1422dece168c913bd6 159 PIRSF PIRSF029256 1 158 9.8E-64 T 10-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 VF_2345 d6422c014394eb1422dece168c913bd6 159 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 156 31.855 T 10-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 VF_2345 d6422c014394eb1422dece168c913bd6 159 Gene3D G3DSA:3.40.1280.10 1 159 4.1E-62 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VF_2345 d6422c014394eb1422dece168c913bd6 159 SUPERFAMILY SSF75217 2 157 1.83E-41 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases VF_2345 d6422c014394eb1422dece168c913bd6 159 Pfam PF00588 SpoU rRNA Methylase family 3 146 4.5E-30 T 10-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VF_0681 1bcb8d04de6d683e8501cff950ff78e6 556 Gene3D G3DSA:3.40.190.10 76 538 9.1E-138 T 10-10-2018 VF_0681 1bcb8d04de6d683e8501cff950ff78e6 556 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 104 452 1.7E-60 T 10-10-2018 IPR000914 Solute-binding protein family 5 domain VF_0681 1bcb8d04de6d683e8501cff950ff78e6 556 PIRSF PIRSF002741 23 529 8.7E-79 T 10-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VF_0681 1bcb8d04de6d683e8501cff950ff78e6 556 SUPERFAMILY SSF53850 62 528 2.9E-88 T 10-10-2018 VF_0681 1bcb8d04de6d683e8501cff950ff78e6 556 Gene3D G3DSA:3.10.105.10 289 526 9.1E-138 T 10-10-2018 VF_2358 90c1f72f974ba9207c8093a43ab01b0f 401 SUPERFAMILY SSF103473 10 398 2.35E-30 T 10-10-2018 IPR036259 MFS transporter superfamily VF_2358 90c1f72f974ba9207c8093a43ab01b0f 401 Gene3D G3DSA:1.20.1250.20 7 200 2.3E-12 T 10-10-2018 VF_2358 90c1f72f974ba9207c8093a43ab01b0f 401 Pfam PF07690 Major Facilitator Superfamily 17 300 1.4E-14 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_2358 90c1f72f974ba9207c8093a43ab01b0f 401 Gene3D G3DSA:1.20.1250.20 208 401 1.6E-11 T 10-10-2018 VF_0387 14bd79f2e800a3e0054a24f2c3c89362 489 Gene3D G3DSA:1.10.10.60 429 486 2.7E-23 T 10-10-2018 VF_0387 14bd79f2e800a3e0054a24f2c3c89362 489 PRINTS PR00045 Sigma-54 factor signature 198 215 1.0E-31 T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VF_0387 14bd79f2e800a3e0054a24f2c3c89362 489 PRINTS PR00045 Sigma-54 factor signature 388 400 1.0E-31 T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VF_0387 14bd79f2e800a3e0054a24f2c3c89362 489 PRINTS PR00045 Sigma-54 factor signature 404 415 1.0E-31 T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VF_0387 14bd79f2e800a3e0054a24f2c3c89362 489 PRINTS PR00045 Sigma-54 factor signature 462 480 1.0E-31 T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VF_0387 14bd79f2e800a3e0054a24f2c3c89362 489 Pfam PF04552 Sigma-54, DNA binding domain 329 487 8.4E-72 T 10-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding VF_0387 14bd79f2e800a3e0054a24f2c3c89362 489 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 486 1.1E-155 T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VF_0387 14bd79f2e800a3e0054a24f2c3c89362 489 Gene3D G3DSA:1.10.10.1330 128 246 2.8E-24 T 10-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily VF_0387 14bd79f2e800a3e0054a24f2c3c89362 489 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 467 474 - T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VF_0387 14bd79f2e800a3e0054a24f2c3c89362 489 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 376 395 - T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VF_0387 14bd79f2e800a3e0054a24f2c3c89362 489 PIRSF PIRSF000774 1 489 2.6E-154 T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VF_0387 14bd79f2e800a3e0054a24f2c3c89362 489 Pfam PF04963 Sigma-54 factor, core binding domain 126 315 3.2E-60 T 10-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 VF_0387 14bd79f2e800a3e0054a24f2c3c89362 489 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 4 49 6.3E-17 T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VF_A0262 e0c8497e7fe771c8ec72a8465a6a0232 109 Gene3D G3DSA:1.10.3730.20 1 109 5.7E-28 T 10-10-2018 VF_A0262 e0c8497e7fe771c8ec72a8465a6a0232 109 SUPERFAMILY SSF103481 4 105 4.97E-17 T 10-10-2018 VF_A0262 e0c8497e7fe771c8ec72a8465a6a0232 109 Pfam PF00893 Small Multidrug Resistance protein 1 93 4.5E-21 T 10-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 VF_0523 93c444aa01a990adcf6677d0f5464798 219 PRINTS PR01021 OMPA domain signature 158 174 8.6E-11 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_0523 93c444aa01a990adcf6677d0f5464798 219 PRINTS PR01021 OMPA domain signature 114 136 8.6E-11 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_0523 93c444aa01a990adcf6677d0f5464798 219 PRINTS PR01021 OMPA domain signature 143 158 8.6E-11 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_0523 93c444aa01a990adcf6677d0f5464798 219 SUPERFAMILY SSF103088 93 211 1.44E-28 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_0523 93c444aa01a990adcf6677d0f5464798 219 Pfam PF00691 OmpA family 113 207 1.8E-17 T 10-10-2018 IPR006665 OmpA-like domain VF_0523 93c444aa01a990adcf6677d0f5464798 219 Gene3D G3DSA:3.30.1330.60 74 219 2.4E-30 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_0436 8df574666e8bd9fd05e3b170fbd98aa1 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 2 242 1.2E-84 T 10-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 VF_0436 8df574666e8bd9fd05e3b170fbd98aa1 243 SUPERFAMILY SSF75217 75 242 3.98E-52 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases VF_0436 8df574666e8bd9fd05e3b170fbd98aa1 243 SUPERFAMILY SSF88697 2 70 7.95E-19 T 10-10-2018 IPR015947 PUA-like superfamily VF_0436 8df574666e8bd9fd05e3b170fbd98aa1 243 Gene3D G3DSA:2.40.240.20 1 70 5.9E-24 T 10-10-2018 VF_0436 8df574666e8bd9fd05e3b170fbd98aa1 243 Gene3D G3DSA:3.40.1280.10 74 243 5.4E-65 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VF_0436 8df574666e8bd9fd05e3b170fbd98aa1 243 Pfam PF04452 RNA methyltransferase 18 236 6.4E-76 T 10-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 VF_0436 8df574666e8bd9fd05e3b170fbd98aa1 243 PIRSF PIRSF015601 3 242 1.0E-55 T 10-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 VF_1785 9958ce103dec4f723db30fec0df0ea4b 205 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 203 36.104 T 10-10-2018 IPR007451 High frequency lysogenization protein HflD VF_1785 9958ce103dec4f723db30fec0df0ea4b 205 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 194 1.0E-107 T 10-10-2018 VF_1785 9958ce103dec4f723db30fec0df0ea4b 205 Gene3D G3DSA:1.10.3890.10 1 205 1.8E-76 T 10-10-2018 IPR035932 HflD-like superfamily VF_1785 9958ce103dec4f723db30fec0df0ea4b 205 Pfam PF04356 Protein of unknown function (DUF489) 7 195 7.1E-77 T 10-10-2018 IPR007451 High frequency lysogenization protein HflD VF_1785 9958ce103dec4f723db30fec0df0ea4b 205 SUPERFAMILY SSF101322 2 204 2.22E-81 T 10-10-2018 IPR035932 HflD-like superfamily VF_A1123 1c387ded7477da3f81b73177cce09f2a 421 TIGRFAM TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase 2 410 2.7E-202 T 10-10-2018 IPR012773 Ectoine biosynthetic protein GO:0019491|GO:0030170|GO:0047307 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 VF_A1123 1c387ded7477da3f81b73177cce09f2a 421 SUPERFAMILY SSF53383 7 410 5.36E-106 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_A1123 1c387ded7477da3f81b73177cce09f2a 421 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 230 266 - T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VF_A1123 1c387ded7477da3f81b73177cce09f2a 421 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 3 413 1.7E-146 T 10-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 VF_A1123 1c387ded7477da3f81b73177cce09f2a 421 Gene3D G3DSA:3.90.1150.10 5 405 4.0E-107 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_A1123 1c387ded7477da3f81b73177cce09f2a 421 Gene3D G3DSA:3.40.640.10 54 313 4.0E-107 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_A1123 1c387ded7477da3f81b73177cce09f2a 421 Pfam PF00202 Aminotransferase class-III 15 409 8.4E-82 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VF_A1123 1c387ded7477da3f81b73177cce09f2a 421 PIRSF PIRSF000521 2 126 5.0E-5 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VF_A1123 1c387ded7477da3f81b73177cce09f2a 421 PIRSF PIRSF000521 172 412 6.5E-32 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VF_A1123 1c387ded7477da3f81b73177cce09f2a 421 PIRSF PIRSF000521 120 154 3.1 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VF_2443 0bd7bd1ad840ac5436d2b3a301b934a9 807 Pfam PF01553 Acyltransferase 290 424 1.2E-23 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VF_2443 0bd7bd1ad840ac5436d2b3a301b934a9 807 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 13 807 31.053 T 10-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 VF_2443 0bd7bd1ad840ac5436d2b3a301b934a9 807 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 11 799 0.0 T 10-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 VF_2443 0bd7bd1ad840ac5436d2b3a301b934a9 807 SUPERFAMILY SSF69593 238 483 7.59E-27 T 10-10-2018 VF_2443 0bd7bd1ad840ac5436d2b3a301b934a9 807 SMART SM00563 300 427 3.5E-27 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VF_2443 0bd7bd1ad840ac5436d2b3a301b934a9 807 PIRSF PIRSF500064 2 807 0.0 T 10-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 VF_2443 0bd7bd1ad840ac5436d2b3a301b934a9 807 PIRSF PIRSF000437 19 807 1.6E-300 T 10-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 VF_0655 e457a757cd6ff0c84abb01fc208545c4 846 Gene3D G3DSA:2.10.10.20 25 78 1.1E-11 T 10-10-2018 VF_0655 e457a757cd6ff0c84abb01fc208545c4 846 Pfam PF00704 Glycosyl hydrolases family 18 525 825 2.5E-27 T 10-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 VF_0655 e457a757cd6ff0c84abb01fc208545c4 846 SMART SM00495 277 326 3.1E-4 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_0655 e457a757cd6ff0c84abb01fc208545c4 846 SMART SM00495 28 74 1.4E-10 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_0655 e457a757cd6ff0c84abb01fc208545c4 846 Gene3D G3DSA:2.60.40.10 430 520 6.6E-21 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_0655 e457a757cd6ff0c84abb01fc208545c4 846 SUPERFAMILY SSF51055 19 77 9.42E-15 T 10-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_0655 e457a757cd6ff0c84abb01fc208545c4 846 SMART SM00636 523 825 3.0E-4 T 10-10-2018 IPR011583 Chitinase II GO:0008061 VF_0655 e457a757cd6ff0c84abb01fc208545c4 846 Gene3D G3DSA:2.60.40.10 335 429 7.1E-24 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_0655 e457a757cd6ff0c84abb01fc208545c4 846 Gene3D G3DSA:2.60.40.10 178 270 2.6E-24 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_0655 e457a757cd6ff0c84abb01fc208545c4 846 Gene3D G3DSA:2.60.40.10 84 175 1.2E-18 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_0655 e457a757cd6ff0c84abb01fc208545c4 846 SUPERFAMILY SSF51445 521 833 3.44E-49 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_0655 e457a757cd6ff0c84abb01fc208545c4 846 ProSitePatterns PS01095 Chitinases family 18 active site. 637 645 - T 10-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VF_0655 e457a757cd6ff0c84abb01fc208545c4 846 Gene3D G3DSA:3.20.20.80 521 842 2.6E-77 T 10-10-2018 VF_0966 2ac3b44309858d20d1da9bb51b95419b 196 SUPERFAMILY SSF101327 4 184 1.44E-30 T 10-10-2018 IPR036255 YgfB-like superfamily VF_0966 2ac3b44309858d20d1da9bb51b95419b 196 Pfam PF03695 Uncharacterised protein family (UPF0149) 5 178 9.3E-31 T 10-10-2018 IPR011978 Uncharacterised protein family UPF0149 VF_0966 2ac3b44309858d20d1da9bb51b95419b 196 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 4 176 4.8E-37 T 10-10-2018 IPR011978 Uncharacterised protein family UPF0149 VF_1971 4015ada801d694f72abb10840ce5020e 147 Gene3D G3DSA:3.10.580.10 1 147 4.4E-48 T 10-10-2018 VF_1971 4015ada801d694f72abb10840ce5020e 147 SMART SM00116 11 59 4.6E-7 T 10-10-2018 IPR000644 CBS domain VF_1971 4015ada801d694f72abb10840ce5020e 147 SMART SM00116 84 131 1.6E-6 T 10-10-2018 IPR000644 CBS domain VF_1971 4015ada801d694f72abb10840ce5020e 147 Pfam PF00571 CBS domain 79 128 2.3E-11 T 10-10-2018 IPR000644 CBS domain VF_1971 4015ada801d694f72abb10840ce5020e 147 Pfam PF00571 CBS domain 4 58 2.2E-14 T 10-10-2018 IPR000644 CBS domain VF_1971 4015ada801d694f72abb10840ce5020e 147 SUPERFAMILY SSF54631 1 133 1.77E-32 T 10-10-2018 VF_2213 ceb667c8b4c29743d3b205051d517eda 196 Gene3D G3DSA:3.40.50.10490 1 195 1.2E-73 T 10-10-2018 VF_2213 ceb667c8b4c29743d3b205051d517eda 196 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 34.736 T 10-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 VF_2213 ceb667c8b4c29743d3b205051d517eda 196 SUPERFAMILY SSF53697 1 191 2.7E-57 T 10-10-2018 VF_2213 ceb667c8b4c29743d3b205051d517eda 196 Pfam PF13580 SIS domain 9 144 1.6E-32 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VF_0665 ab5e3c151338c932975525b9994c523a 386 Gene3D G3DSA:3.20.20.140 65 348 1.0E-112 T 10-10-2018 VF_0665 ab5e3c151338c932975525b9994c523a 386 SUPERFAMILY SSF51338 11 385 2.16E-9 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_0665 ab5e3c151338c932975525b9994c523a 386 SUPERFAMILY SSF51556 64 354 5.04E-88 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_0665 ab5e3c151338c932975525b9994c523a 386 PIRSF PIRSF038994 9 386 1.6E-105 T 10-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 VF_0665 ab5e3c151338c932975525b9994c523a 386 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 9 381 1.4E-105 T 10-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 VF_0665 ab5e3c151338c932975525b9994c523a 386 Gene3D G3DSA:2.30.40.10 15 380 1.0E-112 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_0665 ab5e3c151338c932975525b9994c523a 386 Pfam PF01979 Amidohydrolase family 61 383 2.2E-23 T 10-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VF_A0272 7c2ffc1535c3a122dcae3222564b6412 336 Pfam PF01757 Acyltransferase family 6 326 7.7E-35 T 10-10-2018 IPR002656 Acyltransferase 3 GO:0016747 VF_A0692 2f94e70cbb610c7bfea1f6335bd227a2 439 SUPERFAMILY SSF55073 295 437 3.45E-39 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0692 2f94e70cbb610c7bfea1f6335bd227a2 439 Gene3D G3DSA:3.30.70.270 282 438 1.5E-45 T 10-10-2018 VF_A0692 2f94e70cbb610c7bfea1f6335bd227a2 439 SMART SM00267 279 438 1.3E-52 T 10-10-2018 IPR000160 GGDEF domain VF_A0692 2f94e70cbb610c7bfea1f6335bd227a2 439 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 292 438 6.7E-39 T 10-10-2018 IPR000160 GGDEF domain VF_A0692 2f94e70cbb610c7bfea1f6335bd227a2 439 Pfam PF00990 Diguanylate cyclase, GGDEF domain 291 434 2.3E-37 T 10-10-2018 IPR000160 GGDEF domain VF_A1028 94f56d4ac99533e50a232fc431dfbf06 424 Pfam PF00534 Glycosyl transferases group 1 187 351 8.7E-37 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 VF_A1028 94f56d4ac99533e50a232fc431dfbf06 424 SUPERFAMILY SSF53756 9 372 3.0E-72 T 10-10-2018 VF_A1028 94f56d4ac99533e50a232fc431dfbf06 424 Pfam PF13439 Glycosyltransferase Family 4 20 177 2.3E-18 T 10-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 VF_A1028 94f56d4ac99533e50a232fc431dfbf06 424 Gene3D G3DSA:3.40.50.2000 71 370 5.1E-67 T 10-10-2018 VF_A1028 94f56d4ac99533e50a232fc431dfbf06 424 Gene3D G3DSA:3.40.50.2000 174 357 5.1E-67 T 10-10-2018 VF_0036 c2a17dcf8f0d9a6b67b542418c393806 371 Gene3D G3DSA:3.20.20.70 10 365 5.4E-107 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0036 c2a17dcf8f0d9a6b67b542418c393806 371 SMART SM00876 256 359 3.1E-35 T 10-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VF_0036 c2a17dcf8f0d9a6b67b542418c393806 371 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 256 357 1.3E-24 T 10-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VF_0036 c2a17dcf8f0d9a6b67b542418c393806 371 SUPERFAMILY SSF102114 37 329 2.88E-52 T 10-10-2018 VF_0036 c2a17dcf8f0d9a6b67b542418c393806 371 TIGRFAM TIGR02351 thiH: thiazole biosynthesis protein ThiH 2 366 1.1E-175 T 10-10-2018 IPR012726 Thiazole biosynthesis ThiH GO:0005506|GO:0009228|GO:0051539 KEGG: 00730+4.1.99.19|MetaCyc: PWY-6892 VF_0036 c2a17dcf8f0d9a6b67b542418c393806 371 Pfam PF04055 Radical SAM superfamily 81 222 3.2E-9 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_0386 b799d0f37dc79d7d263b3886e925905d 95 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 1.6E-33 T 10-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 VF_0386 b799d0f37dc79d7d263b3886e925905d 95 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 92 6.4E-29 T 10-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 VF_0386 b799d0f37dc79d7d263b3886e925905d 95 Gene3D G3DSA:3.30.160.100 1 95 7.9E-38 T 10-10-2018 IPR036567 Ribosome hibernation promotion factor-like VF_0386 b799d0f37dc79d7d263b3886e925905d 95 SUPERFAMILY SSF69754 1 95 4.05E-34 T 10-10-2018 IPR036567 Ribosome hibernation promotion factor-like VF_2203 cdcc6c24eba158aae849ef5f0cfc4a6a 404 Gene3D G3DSA:3.40.1190.10 61 263 4.2E-66 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VF_2203 cdcc6c24eba158aae849ef5f0cfc4a6a 404 SUPERFAMILY SSF53623 62 261 1.83E-53 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VF_2203 cdcc6c24eba158aae849ef5f0cfc4a6a 404 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 398 1.5E-123 T 10-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_2203 cdcc6c24eba158aae849ef5f0cfc4a6a 404 Pfam PF08245 Mur ligase middle domain 77 243 1.1E-29 T 10-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VF_2203 cdcc6c24eba158aae849ef5f0cfc4a6a 404 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 2 400 29.355 T 10-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_2203 cdcc6c24eba158aae849ef5f0cfc4a6a 404 Pfam PF02875 Mur ligase family, glutamate ligase domain 266 320 5.9E-7 T 10-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VF_2203 cdcc6c24eba158aae849ef5f0cfc4a6a 404 SUPERFAMILY SSF51984 1 61 2.49E-8 T 10-10-2018 VF_2203 cdcc6c24eba158aae849ef5f0cfc4a6a 404 Gene3D G3DSA:3.90.190.20 264 397 1.2E-39 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VF_2203 cdcc6c24eba158aae849ef5f0cfc4a6a 404 Gene3D G3DSA:3.40.50.720 1 60 4.1E-11 T 10-10-2018 VF_2203 cdcc6c24eba158aae849ef5f0cfc4a6a 404 SUPERFAMILY SSF53244 263 399 3.48E-44 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VF_1746 6043554266d15072246aba0b86ad9a78 193 Pfam PF02545 Maf-like protein 4 187 2.0E-45 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 VF_1746 6043554266d15072246aba0b86ad9a78 193 PIRSF PIRSF006305 1 193 1.6E-45 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 VF_1746 6043554266d15072246aba0b86ad9a78 193 SUPERFAMILY SSF52972 3 187 2.94E-55 T 10-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VF_1746 6043554266d15072246aba0b86ad9a78 193 Hamap MF_00528 Septum formation protein Maf [maf]. 4 192 28.353 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 VF_1746 6043554266d15072246aba0b86ad9a78 193 TIGRFAM TIGR00172 maf: septum formation protein Maf 1 185 1.9E-55 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 VF_1746 6043554266d15072246aba0b86ad9a78 193 Gene3D G3DSA:3.90.950.10 3 193 6.0E-60 T 10-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VF_1878 f2551bb5cf73316f36f10f872442339e 275 Pfam PF01739 CheR methyltransferase, SAM binding domain 76 269 1.0E-66 T 10-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal VF_1878 f2551bb5cf73316f36f10f872442339e 275 SMART SM00138 8 272 3.2E-126 T 10-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VF_1878 f2551bb5cf73316f36f10f872442339e 275 SUPERFAMILY SSF47757 3 75 9.68E-15 T 10-10-2018 VF_1878 f2551bb5cf73316f36f10f872442339e 275 Gene3D G3DSA:3.40.50.150 75 274 4.8E-60 T 10-10-2018 VF_1878 f2551bb5cf73316f36f10f872442339e 275 Pfam PF03705 CheR methyltransferase, all-alpha domain 9 59 2.5E-10 T 10-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal VF_1878 f2551bb5cf73316f36f10f872442339e 275 Gene3D G3DSA:1.10.155.10 1 74 3.1E-10 T 10-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily VF_1878 f2551bb5cf73316f36f10f872442339e 275 SUPERFAMILY SSF53335 76 269 1.28E-49 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_1878 f2551bb5cf73316f36f10f872442339e 275 PRINTS PR00996 Glutamate methyltransferase family signature 30 43 6.7E-42 T 10-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VF_1878 f2551bb5cf73316f36f10f872442339e 275 PRINTS PR00996 Glutamate methyltransferase family signature 212 226 6.7E-42 T 10-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VF_1878 f2551bb5cf73316f36f10f872442339e 275 PRINTS PR00996 Glutamate methyltransferase family signature 231 254 6.7E-42 T 10-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VF_1878 f2551bb5cf73316f36f10f872442339e 275 PRINTS PR00996 Glutamate methyltransferase family signature 106 126 6.7E-42 T 10-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VF_1878 f2551bb5cf73316f36f10f872442339e 275 PRINTS PR00996 Glutamate methyltransferase family signature 69 81 6.7E-42 T 10-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VF_1878 f2551bb5cf73316f36f10f872442339e 275 PRINTS PR00996 Glutamate methyltransferase family signature 143 159 6.7E-42 T 10-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VF_1428 fdd2cc8b96d0cafd5d659b7b81460254 516 Gene3D G3DSA:3.30.1120.10 396 454 5.4E-98 T 10-10-2018 VF_1428 fdd2cc8b96d0cafd5d659b7b81460254 516 SUPERFAMILY SSF53649 25 500 5.09E-120 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_1428 fdd2cc8b96d0cafd5d659b7b81460254 516 Pfam PF00884 Sulfatase 28 353 1.6E-55 T 10-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VF_1428 fdd2cc8b96d0cafd5d659b7b81460254 516 Gene3D G3DSA:3.40.720.10 28 395 5.4E-98 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VF_1428 fdd2cc8b96d0cafd5d659b7b81460254 516 Pfam PF14707 C-terminal region of aryl-sulfatase 393 453 3.7E-8 T 10-10-2018 VF_1955 2e716cc6bafa70ad81e19c59ffc0f2f8 452 Gene3D G3DSA:2.30.42.10 126 221 4.6E-28 T 10-10-2018 VF_1955 2e716cc6bafa70ad81e19c59ffc0f2f8 452 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 227 277 4.0E-7 T 10-10-2018 IPR001478 PDZ domain GO:0005515 VF_1955 2e716cc6bafa70ad81e19c59ffc0f2f8 452 SUPERFAMILY SSF50156 211 294 1.84E-15 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 VF_1955 2e716cc6bafa70ad81e19c59ffc0f2f8 452 SUPERFAMILY SSF50156 89 186 1.12E-9 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 VF_1955 2e716cc6bafa70ad81e19c59ffc0f2f8 452 Pfam PF02163 Peptidase family M50 11 440 4.7E-89 T 10-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 VF_1955 2e716cc6bafa70ad81e19c59ffc0f2f8 452 Gene3D G3DSA:2.30.42.10 226 312 2.9E-18 T 10-10-2018 VF_1955 2e716cc6bafa70ad81e19c59ffc0f2f8 452 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 3 452 4.5E-139 T 10-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 VF_1955 2e716cc6bafa70ad81e19c59ffc0f2f8 452 SMART SM00228 116 184 5.2 T 10-10-2018 IPR001478 PDZ domain GO:0005515 VF_1955 2e716cc6bafa70ad81e19c59ffc0f2f8 452 SMART SM00228 186 281 5.0E-8 T 10-10-2018 IPR001478 PDZ domain GO:0005515 VF_A0586 b0853f0e24566a07c00b54e745be59da 518 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 433 516 2.6E-36 T 10-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 VF_A0586 b0853f0e24566a07c00b54e745be59da 518 SUPERFAMILY SSF52283 1 174 2.72E-53 T 10-10-2018 VF_A0586 b0853f0e24566a07c00b54e745be59da 518 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 143 7.5E-47 T 10-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal VF_A0586 b0853f0e24566a07c00b54e745be59da 518 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 10-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 VF_A0586 b0853f0e24566a07c00b54e745be59da 518 Gene3D G3DSA:3.40.50.720 3 371 1.0E-157 T 10-10-2018 VF_A0586 b0853f0e24566a07c00b54e745be59da 518 Gene3D G3DSA:3.40.50.720 143 324 1.0E-157 T 10-10-2018 VF_A0586 b0853f0e24566a07c00b54e745be59da 518 SMART SM01002 152 317 9.3E-83 T 10-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain VF_A0586 b0853f0e24566a07c00b54e745be59da 518 SMART SM01003 4 143 6.3E-68 T 10-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal VF_A0586 b0853f0e24566a07c00b54e745be59da 518 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 2 516 6.1E-276 T 10-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 VF_A0586 b0853f0e24566a07c00b54e745be59da 518 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 147 374 1.2E-74 T 10-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain VF_A0586 b0853f0e24566a07c00b54e745be59da 518 SUPERFAMILY SSF51735 143 322 1.93E-36 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0586 b0853f0e24566a07c00b54e745be59da 518 PIRSF PIRSF000203 1 516 9.1E-273 T 10-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 VF_A0497 272bfed3005e27792bd4763d206de56e 334 Gene3D G3DSA:3.40.640.10 1 244 1.9E-93 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_A0497 272bfed3005e27792bd4763d206de56e 334 Pfam PF01212 Beta-eliminating lyase 3 284 1.1E-95 T 10-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 VF_A0497 272bfed3005e27792bd4763d206de56e 334 PIRSF PIRSF017617 1 334 7.7E-133 T 10-10-2018 IPR023603 Threonine aldolase VF_A0497 272bfed3005e27792bd4763d206de56e 334 Gene3D G3DSA:3.90.1150.10 245 334 3.3E-22 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_A0497 272bfed3005e27792bd4763d206de56e 334 SUPERFAMILY SSF53383 1 332 9.82E-115 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_1409 a5bec8adc7ecae8721f71bc20f574725 247 SMART SM01144 27 220 3.9E-72 T 10-10-2018 IPR005636 DTW VF_1409 a5bec8adc7ecae8721f71bc20f574725 247 Pfam PF03942 DTW domain 29 215 9.1E-42 T 10-10-2018 IPR005636 DTW VF_A0045 a05ee413c1d40d85c87c2ad7814f1ef6 353 Gene3D G3DSA:1.10.287.470 91 149 1.5E-63 T 10-10-2018 VF_A0045 a05ee413c1d40d85c87c2ad7814f1ef6 353 Pfam PF13533 Biotin-lipoyl like 57 104 1.3E-9 T 10-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VF_A0045 a05ee413c1d40d85c87c2ad7814f1ef6 353 Gene3D G3DSA:2.40.50.100 57 189 1.5E-63 T 10-10-2018 VF_A0045 a05ee413c1d40d85c87c2ad7814f1ef6 353 SUPERFAMILY SSF111369 48 266 1.83E-27 T 10-10-2018 VF_A0045 a05ee413c1d40d85c87c2ad7814f1ef6 353 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 36 347 8.5E-55 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VF_A0045 a05ee413c1d40d85c87c2ad7814f1ef6 353 Pfam PF13437 HlyD family secretion protein 155 259 7.4E-5 T 10-10-2018 VF_A0045 a05ee413c1d40d85c87c2ad7814f1ef6 353 Gene3D G3DSA:2.40.420.20 270 346 1.5E-63 T 10-10-2018 VF_A0045 a05ee413c1d40d85c87c2ad7814f1ef6 353 Gene3D G3DSA:2.40.30.170 43 269 1.5E-63 T 10-10-2018 VF_A0970 3eb22db1117219328a0f4f8220878b28 212 SUPERFAMILY SSF51206 5 129 3.67E-19 T 10-10-2018 IPR018490 Cyclic nucleotide-binding-like VF_A0970 3eb22db1117219328a0f4f8220878b28 212 Gene3D G3DSA:2.60.120.1460 8 204 4.6E-15 T 10-10-2018 VF_A0970 3eb22db1117219328a0f4f8220878b28 212 Pfam PF00027 Cyclic nucleotide-binding domain 16 104 1.0E-6 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain VF_1280 d9e861e9555d8562cef6ebbf2d8e004d 673 SMART SM00228 251 328 3.8E-9 T 10-10-2018 IPR001478 PDZ domain GO:0005515 VF_1280 d9e861e9555d8562cef6ebbf2d8e004d 673 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 535 667 1.8E-38 T 10-10-2018 IPR020992 Tail specific protease, C-terminal VF_1280 d9e861e9555d8562cef6ebbf2d8e004d 673 Pfam PF03572 Peptidase family S41 361 530 6.7E-50 T 10-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 VF_1280 d9e861e9555d8562cef6ebbf2d8e004d 673 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 205 552 5.6E-114 T 10-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 VF_1280 d9e861e9555d8562cef6ebbf2d8e004d 673 Gene3D G3DSA:2.30.42.10 241 325 1.3E-11 T 10-10-2018 VF_1280 d9e861e9555d8562cef6ebbf2d8e004d 673 Pfam PF08180 B melanoma antigen family 9 41 2.2E-14 T 10-10-2018 IPR012530 B melanoma antigen-like VF_1280 d9e861e9555d8562cef6ebbf2d8e004d 673 Gene3D G3DSA:3.90.226.10 329 550 9.0E-57 T 10-10-2018 VF_1280 d9e861e9555d8562cef6ebbf2d8e004d 673 SUPERFAMILY SSF50156 222 344 1.15E-14 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 VF_1280 d9e861e9555d8562cef6ebbf2d8e004d 673 SUPERFAMILY SSF52096 171 543 9.28E-71 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VF_1280 d9e861e9555d8562cef6ebbf2d8e004d 673 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 244 325 1.1E-13 T 10-10-2018 IPR001478 PDZ domain GO:0005515 VF_1280 d9e861e9555d8562cef6ebbf2d8e004d 673 SMART SM00245 331 532 8.1E-68 T 10-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 VF_0650 3afdff0c9bf7bee9e460c70312d5a3d6 171 Gene3D G3DSA:3.40.140.10 3 169 6.2E-63 T 10-10-2018 VF_0650 3afdff0c9bf7bee9e460c70312d5a3d6 171 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 14 155 46.596 T 10-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 VF_0650 3afdff0c9bf7bee9e460c70312d5a3d6 171 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 59 96 - T 10-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 VF_0650 3afdff0c9bf7bee9e460c70312d5a3d6 171 SUPERFAMILY SSF53927 10 159 9.7E-56 T 10-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VF_0650 3afdff0c9bf7bee9e460c70312d5a3d6 171 Pfam PF14437 MafB19-like deaminase 12 155 6.1E-34 T 10-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 VF_0714 2a0ed74f5177900024251d09cec8ef4a 254 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 182 199 - T 10-10-2018 IPR000540 Flagellar motor protein MotA, conserved site VF_0714 2a0ed74f5177900024251d09cec8ef4a 254 Pfam PF01618 MotA/TolQ/ExbB proton channel family 97 212 3.8E-23 T 10-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VF_0080 ab2f11c4f9cd5391916368e8fd684560 457 Gene3D G3DSA:3.80.30.20 1 363 2.9E-136 T 10-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VF_0080 ab2f11c4f9cd5391916368e8fd684560 457 Pfam PF06969 HemN C-terminal domain 363 431 8.3E-11 T 10-10-2018 IPR010723 HemN, C-terminal VF_0080 ab2f11c4f9cd5391916368e8fd684560 457 SUPERFAMILY SSF102114 6 444 1.96E-142 T 10-10-2018 VF_0080 ab2f11c4f9cd5391916368e8fd684560 457 SMART SM00729 52 272 7.6E-51 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VF_0080 ab2f11c4f9cd5391916368e8fd684560 457 PIRSF PIRSF000167 3 454 2.0E-169 T 10-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 VF_0080 ab2f11c4f9cd5391916368e8fd684560 457 Pfam PF04055 Radical SAM superfamily 57 228 5.8E-19 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_0080 ab2f11c4f9cd5391916368e8fd684560 457 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 8 457 9.3E-206 T 10-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 VF_0080 ab2f11c4f9cd5391916368e8fd684560 457 Gene3D G3DSA:1.10.10.920 364 457 4.1E-33 T 10-10-2018 VF_A0477 d3f6905c798ce8b9fac2a3a111c3eb32 450 Pfam PF00990 Diguanylate cyclase, GGDEF domain 331 411 5.1E-5 T 10-10-2018 IPR000160 GGDEF domain VF_A0477 d3f6905c798ce8b9fac2a3a111c3eb32 450 SUPERFAMILY SSF55073 313 409 5.81E-5 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0477 d3f6905c798ce8b9fac2a3a111c3eb32 450 Gene3D G3DSA:3.30.70.270 299 434 4.0E-5 T 10-10-2018 VF_0383 a28874d7fe98a3cabf83b0d895827cba 92 Pfam PF00381 PTS HPr component phosphorylation site 6 85 4.0E-22 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_0383 a28874d7fe98a3cabf83b0d895827cba 92 PRINTS PR00107 Phosphocarrier protein signature 56 73 5.4E-9 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_0383 a28874d7fe98a3cabf83b0d895827cba 92 PRINTS PR00107 Phosphocarrier protein signature 41 56 5.4E-9 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_0383 a28874d7fe98a3cabf83b0d895827cba 92 PRINTS PR00107 Phosphocarrier protein signature 15 31 5.4E-9 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_0383 a28874d7fe98a3cabf83b0d895827cba 92 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 5 85 1.9E-21 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_0383 a28874d7fe98a3cabf83b0d895827cba 92 SUPERFAMILY SSF55594 5 91 3.66E-25 T 10-10-2018 IPR035895 HPr-like superfamily VF_0383 a28874d7fe98a3cabf83b0d895827cba 92 Gene3D G3DSA:3.30.1340.10 4 86 2.3E-25 T 10-10-2018 IPR035895 HPr-like superfamily VF_1434 cdceb9a18391218fa1be94746d9b8483 65 Pfam PF04400 (Na+)-NQR maturation NqrM 22 61 4.2E-19 T 10-10-2018 IPR007495 (Na+)-NQR maturation factor NqrM VF_0847 0656cb0dd22a7dcb491099ecf0a21c07 85 SUPERFAMILY SSF47336 4 83 7.98E-19 T 10-10-2018 IPR036736 ACP-like superfamily VF_0847 0656cb0dd22a7dcb491099ecf0a21c07 85 Pfam PF00550 Phosphopantetheine attachment site 11 76 1.8E-12 T 10-10-2018 IPR009081 Phosphopantetheine binding ACP domain VF_0847 0656cb0dd22a7dcb491099ecf0a21c07 85 Gene3D G3DSA:1.10.1200.10 3 85 1.5E-17 T 10-10-2018 IPR036736 ACP-like superfamily VF_0847 0656cb0dd22a7dcb491099ecf0a21c07 85 Hamap MF_01217 Acyl carrier protein [acpP]. 8 82 14.05 T 10-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 VF_A1116 e362160c3746610aa2e08947da829968 213 Pfam PF01810 LysE type translocator 24 211 3.5E-33 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_A1116 e362160c3746610aa2e08947da829968 213 PIRSF PIRSF006324 8 213 3.9E-52 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 Gene3D G3DSA:3.20.20.10 67 351 1.6E-235 T 10-10-2018 IPR029066 PLP-binding barrel VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 PIRSF PIRSF001336 2 636 3.3E-251 T 10-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 Gene3D G3DSA:2.40.37.10 14 572 1.6E-235 T 10-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 77 346 5.1E-50 T 10-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 PRINTS PR01180 Arginine decarboxylase signature 467 488 2.7E-65 T 10-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 PRINTS PR01180 Arginine decarboxylase signature 545 566 2.7E-65 T 10-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 PRINTS PR01180 Arginine decarboxylase signature 326 343 2.7E-65 T 10-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 PRINTS PR01180 Arginine decarboxylase signature 199 221 2.7E-65 T 10-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 PRINTS PR01180 Arginine decarboxylase signature 90 104 2.7E-65 T 10-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 PRINTS PR01180 Arginine decarboxylase signature 175 196 2.7E-65 T 10-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 PRINTS PR01180 Arginine decarboxylase signature 492 517 2.7E-65 T 10-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 PRINTS PR01180 Arginine decarboxylase signature 66 81 2.7E-65 T 10-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 PRINTS PR01180 Arginine decarboxylase signature 149 164 2.7E-65 T 10-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 TIGRFAM TIGR01273 speA: arginine decarboxylase 8 634 1.9E-265 T 10-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 Gene3D G3DSA:1.20.58.930 368 463 1.6E-235 T 10-10-2018 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 SUPERFAMILY SSF51419 66 348 1.28E-63 T 10-10-2018 IPR029066 PLP-binding barrel VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 3 635 42.308 T 10-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 545 558 2.0E-12 T 10-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 98 116 2.0E-12 T 10-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 242 255 2.0E-12 T 10-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 336 355 2.0E-12 T 10-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VF_A0840 ec79433b3fcbb7c9457c4e86149b5d34 636 SUPERFAMILY SSF50621 463 570 2.67E-6 T 10-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VF_0357 e9ba226bde3780a53d0a8eb6fc8414fb 212 Pfam PF04612 Type II secretion system (T2SS), protein M 5 101 3.6E-6 T 10-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 VF_1053 cde4295855db2f2b30972297725422a7 446 SUPERFAMILY SSF55874 294 438 1.83E-28 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1053 cde4295855db2f2b30972297725422a7 446 Gene3D G3DSA:3.30.565.10 291 445 1.8E-31 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1053 cde4295855db2f2b30972297725422a7 446 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 333 440 3.3E-16 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1053 cde4295855db2f2b30972297725422a7 446 SUPERFAMILY SSF51206 19 132 8.25E-15 T 10-10-2018 IPR018490 Cyclic nucleotide-binding-like VF_1053 cde4295855db2f2b30972297725422a7 446 SMART SM00387 330 441 1.0E-22 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1053 cde4295855db2f2b30972297725422a7 446 Gene3D G3DSA:2.60.120.10 1 132 2.0E-13 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_1053 cde4295855db2f2b30972297725422a7 446 Gene3D G3DSA:1.10.287.130 133 285 4.5E-10 T 10-10-2018 VF_1053 cde4295855db2f2b30972297725422a7 446 Pfam PF00027 Cyclic nucleotide-binding domain 21 100 1.1E-10 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain VF_1053 cde4295855db2f2b30972297725422a7 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 402 420 3.1E-10 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1053 cde4295855db2f2b30972297725422a7 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 397 3.1E-10 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1053 cde4295855db2f2b30972297725422a7 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 383 3.1E-10 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1053 cde4295855db2f2b30972297725422a7 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 438 3.1E-10 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1053 cde4295855db2f2b30972297725422a7 446 SMART SM00100 2 122 1.2E-5 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain VF_0193 41ab51165d453a3ffd86fd686b650005 376 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 4 363 6.7E-68 T 10-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 VF_0193 41ab51165d453a3ffd86fd686b650005 376 Gene3D G3DSA:3.40.50.2000 6 187 5.3E-105 T 10-10-2018 VF_0193 41ab51165d453a3ffd86fd686b650005 376 Gene3D G3DSA:3.40.50.2000 188 328 5.3E-105 T 10-10-2018 VF_0193 41ab51165d453a3ffd86fd686b650005 376 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 27 361 1.1E-89 T 10-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VF_0193 41ab51165d453a3ffd86fd686b650005 376 SUPERFAMILY SSF53756 3 374 1.88E-112 T 10-10-2018 VF_A0019 8b95f0e75bc559640467fb8b761c9a38 174 SUPERFAMILY SSF53271 4 172 2.1E-35 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like VF_A0019 8b95f0e75bc559640467fb8b761c9a38 174 Pfam PF00156 Phosphoribosyl transferase domain 11 137 1.5E-16 T 10-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VF_A0019 8b95f0e75bc559640467fb8b761c9a38 174 Gene3D G3DSA:3.40.50.2020 1 174 3.9E-35 T 10-10-2018 VF_1664 654265a5210b4545a0827a628941aa68 199 Gene3D G3DSA:1.10.357.10 1 191 4.1E-35 T 10-10-2018 VF_1664 654265a5210b4545a0827a628941aa68 199 SUPERFAMILY SSF46689 2 75 2.67E-5 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1664 654265a5210b4545a0827a628941aa68 199 Pfam PF13305 WHG domain 90 171 1.0E-10 T 10-10-2018 IPR025996 WHG domain VF_1664 654265a5210b4545a0827a628941aa68 199 SUPERFAMILY SSF48498 83 194 2.45E-17 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VF_1677 295c096446103890e4dd932f16a6ab1a 294 SMART SM00342 210 293 2.2E-25 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_1677 295c096446103890e4dd932f16a6ab1a 294 Gene3D G3DSA:1.10.10.60 189 294 4.5E-27 T 10-10-2018 VF_1677 295c096446103890e4dd932f16a6ab1a 294 SUPERFAMILY SSF46689 193 244 5.82E-8 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1677 295c096446103890e4dd932f16a6ab1a 294 SUPERFAMILY SSF46689 246 290 3.58E-9 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1677 295c096446103890e4dd932f16a6ab1a 294 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 247 289 - T 10-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VF_1677 295c096446103890e4dd932f16a6ab1a 294 Pfam PF06719 AraC-type transcriptional regulator N-terminus 27 181 7.3E-36 T 10-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal VF_1677 295c096446103890e4dd932f16a6ab1a 294 Pfam PF12833 Helix-turn-helix domain 216 290 1.6E-18 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_2046 9f90d9063e9e85a196b94064d541fae0 378 Gene3D G3DSA:2.40.50.100 241 365 3.2E-11 T 10-10-2018 VF_2046 9f90d9063e9e85a196b94064d541fae0 378 SMART SM00382 30 213 2.2E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2046 9f90d9063e9e85a196b94064d541fae0 378 Pfam PF00005 ABC transporter 22 163 3.1E-32 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_2046 9f90d9063e9e85a196b94064d541fae0 378 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_2046 9f90d9063e9e85a196b94064d541fae0 378 Gene3D G3DSA:3.40.50.300 1 240 3.5E-74 T 10-10-2018 VF_2046 9f90d9063e9e85a196b94064d541fae0 378 SUPERFAMILY SSF52540 4 244 5.0E-80 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2046 9f90d9063e9e85a196b94064d541fae0 378 SUPERFAMILY SSF50331 239 367 7.94E-14 T 10-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VF_2046 9f90d9063e9e85a196b94064d541fae0 378 Gene3D G3DSA:2.40.50.140 285 352 3.2E-11 T 10-10-2018 VF_1006 14beca74e71abf6882f2a1f3691f990b 68 Pfam PF10689 Protein of unknown function (DUF2496) 26 68 1.3E-23 T 10-10-2018 IPR019630 Protein of unknown function DUF2496, YbaM-related VF_0056 3ef2152224d93e4eceaba003e0e16176 432 Pfam PF00270 DEAD/DEAH box helicase 33 207 7.4E-46 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_0056 3ef2152224d93e4eceaba003e0e16176 432 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 49.617 T 10-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 VF_0056 3ef2152224d93e4eceaba003e0e16176 432 Pfam PF00271 Helicase conserved C-terminal domain 245 351 1.8E-29 T 10-10-2018 IPR001650 Helicase, C-terminal VF_0056 3ef2152224d93e4eceaba003e0e16176 432 Gene3D G3DSA:3.40.50.300 2 222 1.4E-70 T 10-10-2018 VF_0056 3ef2152224d93e4eceaba003e0e16176 432 SUPERFAMILY SSF52540 85 363 1.09E-67 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0056 3ef2152224d93e4eceaba003e0e16176 432 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 10-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VF_0056 3ef2152224d93e4eceaba003e0e16176 432 SMART SM00487 28 234 1.4E-52 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_0056 3ef2152224d93e4eceaba003e0e16176 432 SMART SM00490 270 351 1.6E-30 T 10-10-2018 IPR001650 Helicase, C-terminal VF_0056 3ef2152224d93e4eceaba003e0e16176 432 Gene3D G3DSA:3.40.50.300 229 413 2.9E-45 T 10-10-2018 VF_A0181 433d6b2658742760ede1bc17bf71aca1 221 SMART SM00448 2 112 3.2E-41 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0181 433d6b2658742760ede1bc17bf71aca1 221 Pfam PF00072 Response regulator receiver domain 4 112 3.6E-29 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0181 433d6b2658742760ede1bc17bf71aca1 221 Gene3D G3DSA:1.10.10.10 135 221 1.2E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0181 433d6b2658742760ede1bc17bf71aca1 221 SMART SM00862 137 215 1.5E-14 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0181 433d6b2658742760ede1bc17bf71aca1 221 Gene3D G3DSA:3.40.50.2300 2 134 1.2E-37 T 10-10-2018 VF_A0181 433d6b2658742760ede1bc17bf71aca1 221 SUPERFAMILY SSF46894 141 216 7.09E-18 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_A0181 433d6b2658742760ede1bc17bf71aca1 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 142 215 2.6E-17 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0181 433d6b2658742760ede1bc17bf71aca1 221 SUPERFAMILY SSF52172 3 133 1.57E-40 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0495 380c0caaaa2e9e64ae86fe666a8829b6 226 Pfam PF04055 Radical SAM superfamily 31 127 8.8E-11 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_A0495 380c0caaaa2e9e64ae86fe666a8829b6 226 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 6 226 34.868 T 10-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 VF_A0495 380c0caaaa2e9e64ae86fe666a8829b6 226 PIRSF PIRSF000370 4 226 8.7E-67 T 10-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 VF_A0495 380c0caaaa2e9e64ae86fe666a8829b6 226 TIGRFAM TIGR04322 rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 12 225 4.2E-114 T 10-10-2018 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 VF_A0495 380c0caaaa2e9e64ae86fe666a8829b6 226 Pfam PF13394 4Fe-4S single cluster domain 27 129 2.5E-13 T 10-10-2018 VF_A0495 380c0caaaa2e9e64ae86fe666a8829b6 226 SUPERFAMILY SSF102114 26 126 1.29E-6 T 10-10-2018 VF_A0495 380c0caaaa2e9e64ae86fe666a8829b6 226 Gene3D G3DSA:3.20.20.70 5 226 2.9E-54 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_2498 40cd273ce8025e4e6041bff70364bb58 188 TIGRFAM TIGR02999 Sig-70_X6: RNA polymerase sigma factor, TIGR02999 family 5 187 1.7E-55 T 10-10-2018 IPR011517 RNA polymerase sigma-70 ECF-like VF_2498 40cd273ce8025e4e6041bff70364bb58 188 Gene3D G3DSA:1.10.10.10 125 188 8.3E-6 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2498 40cd273ce8025e4e6041bff70364bb58 188 Pfam PF07638 ECF sigma factor 5 187 2.3E-30 T 10-10-2018 IPR011517 RNA polymerase sigma-70 ECF-like VF_2498 40cd273ce8025e4e6041bff70364bb58 188 SUPERFAMILY SSF88659 124 186 2.24E-5 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_2498 40cd273ce8025e4e6041bff70364bb58 188 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 187 8.9E-19 T 10-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VF_1734 c10b83b03e4bcbf64029d75753806e9e 268 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 158 261 2.0E-24 T 10-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1734 c10b83b03e4bcbf64029d75753806e9e 268 Gene3D G3DSA:1.20.272.10 148 267 1.0E-11 T 10-10-2018 VF_1734 c10b83b03e4bcbf64029d75753806e9e 268 SUPERFAMILY SSF48019 148 267 8.33E-26 T 10-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 VF_1734 c10b83b03e4bcbf64029d75753806e9e 268 Gene3D G3DSA:3.40.50.300 5 106 4.9E-35 T 10-10-2018 VF_1734 c10b83b03e4bcbf64029d75753806e9e 268 SUPERFAMILY SSF52540 13 129 1.49E-29 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1734 c10b83b03e4bcbf64029d75753806e9e 268 Pfam PF13177 DNA polymerase III, delta subunit 7 105 3.1E-32 T 10-10-2018 VF_A0585 fd93184d05c566787a9c55fd0a9ac57a 458 PIRSF PIRSF000204 1 458 5.9E-232 T 10-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 VF_A0585 fd93184d05c566787a9c55fd0a9ac57a 458 Gene3D G3DSA:3.40.50.1220 282 458 1.3E-88 T 10-10-2018 VF_A0585 fd93184d05c566787a9c55fd0a9ac57a 458 SUPERFAMILY SSF52467 285 456 2.09E-78 T 10-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VF_A0585 fd93184d05c566787a9c55fd0a9ac57a 458 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 456 1.5E-201 T 10-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 VF_0916 5904663e250371c24731f3c6add15085 95 Pfam PF07023 Protein of unknown function (DUF1315) 6 85 1.0E-26 T 10-10-2018 IPR009749 Protein of unknown function DUF1315 VF_A0870 78b93f1d86deb51ad3302e0e045195fe 259 ProDom PD124960 PILUS BIOSYNTHESIS TOXIN D TCPD TRANSMEMBRANE TOXIN-COREGULATED MEMBRANE TCP COREGULATED 6 257 5.0E-129 T 10-10-2018 VF_0701 1670e7dab87dd00eaa9bea88d254e744 218 SUPERFAMILY SSF63380 1 89 1.7E-24 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VF_0701 1670e7dab87dd00eaa9bea88d254e744 218 Gene3D G3DSA:2.40.30.20 102 205 1.9E-35 T 10-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_0701 1670e7dab87dd00eaa9bea88d254e744 218 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 201 2.0E-67 T 10-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_0701 1670e7dab87dd00eaa9bea88d254e744 218 SUPERFAMILY SSF63380 93 194 4.85E-32 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VF_0701 1670e7dab87dd00eaa9bea88d254e744 218 PIRSF PIRSF000498 1 211 2.5E-78 T 10-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_0701 1670e7dab87dd00eaa9bea88d254e744 218 Pfam PF00677 Lumazine binding domain 3 87 1.0E-20 T 10-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_0701 1670e7dab87dd00eaa9bea88d254e744 218 Pfam PF00677 Lumazine binding domain 100 184 2.4E-24 T 10-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_0701 1670e7dab87dd00eaa9bea88d254e744 218 Gene3D G3DSA:2.40.30.20 1 89 5.3E-27 T 10-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_2445 03d39b1d34e55e318a713bc693258b3c 180 Gene3D G3DSA:3.40.1410.10 8 174 8.7E-40 T 10-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VF_2445 03d39b1d34e55e318a713bc693258b3c 180 Pfam PF04345 Chorismate lyase 12 178 1.8E-47 T 10-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 VF_2445 03d39b1d34e55e318a713bc693258b3c 180 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 15 174 23.457 T 10-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 VF_2445 03d39b1d34e55e318a713bc693258b3c 180 SUPERFAMILY SSF64288 7 174 1.33E-45 T 10-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VF_0438 64cfdfdc6ef77637900b9e5bee4cdfbd 166 SMART SM00731 10 159 1.4E-49 T 10-10-2018 IPR006640 SprT-like VF_0438 64cfdfdc6ef77637900b9e5bee4cdfbd 166 Pfam PF10263 SprT-like family 13 113 3.3E-19 T 10-10-2018 IPR006640 SprT-like VF_0438 64cfdfdc6ef77637900b9e5bee4cdfbd 166 Pfam PF17283 SprT-like zinc ribbon domain 119 159 2.9E-9 T 10-10-2018 IPR035240 SprT-like, zinc ribbon domain VF_0438 64cfdfdc6ef77637900b9e5bee4cdfbd 166 Hamap MF_00746 Protein SprT [sprT]. 6 159 38.935 T 10-10-2018 IPR023483 Uncharacterised protein family SprT VF_2513 dd23b454e9ca926e05801d81da30c29f 626 Pfam PF00571 CBS domain 225 277 1.1E-10 T 10-10-2018 IPR000644 CBS domain VF_2513 dd23b454e9ca926e05801d81da30c29f 626 Pfam PF00571 CBS domain 153 214 5.2E-8 T 10-10-2018 IPR000644 CBS domain VF_2513 dd23b454e9ca926e05801d81da30c29f 626 Pfam PF03445 Putative nucleotidyltransferase DUF294 304 441 2.6E-48 T 10-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 VF_2513 dd23b454e9ca926e05801d81da30c29f 626 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 478 621 3.7E-45 T 10-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding VF_2513 dd23b454e9ca926e05801d81da30c29f 626 SMART SM00116 160 215 0.003 T 10-10-2018 IPR000644 CBS domain VF_2513 dd23b454e9ca926e05801d81da30c29f 626 SMART SM00116 232 279 7.9E-6 T 10-10-2018 IPR000644 CBS domain VF_2513 dd23b454e9ca926e05801d81da30c29f 626 SMART SM00100 17 134 3.0E-6 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain VF_2513 dd23b454e9ca926e05801d81da30c29f 626 Gene3D G3DSA:2.60.120.10 1 147 1.1E-21 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_2513 dd23b454e9ca926e05801d81da30c29f 626 SUPERFAMILY SSF54631 147 278 3.28E-29 T 10-10-2018 VF_2513 dd23b454e9ca926e05801d81da30c29f 626 Gene3D G3DSA:3.10.580.10 148 281 2.2E-33 T 10-10-2018 VF_2513 dd23b454e9ca926e05801d81da30c29f 626 Pfam PF00027 Cyclic nucleotide-binding domain 37 119 3.5E-13 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain VF_2513 dd23b454e9ca926e05801d81da30c29f 626 SUPERFAMILY SSF51206 4 127 2.36E-25 T 10-10-2018 IPR018490 Cyclic nucleotide-binding-like VF_1476 73df9c0bc6c7cbd01feedf0c6226849a 561 Gene3D G3DSA:2.30.40.10 28 532 3.0E-126 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_1476 73df9c0bc6c7cbd01feedf0c6226849a 561 SUPERFAMILY SSF51338 21 556 7.2E-24 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_1476 73df9c0bc6c7cbd01feedf0c6226849a 561 SUPERFAMILY SSF51556 80 516 1.67E-21 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_1476 73df9c0bc6c7cbd01feedf0c6226849a 561 Gene3D G3DSA:3.20.20.140 81 515 3.0E-126 T 10-10-2018 VF_1476 73df9c0bc6c7cbd01feedf0c6226849a 561 Gene3D G3DSA:3.10.310.70 99 225 3.0E-126 T 10-10-2018 VF_1476 73df9c0bc6c7cbd01feedf0c6226849a 561 Pfam PF07969 Amidohydrolase family 69 556 7.7E-90 T 10-10-2018 IPR013108 Amidohydrolase 3 VF_0242 a8c1ae57be2a152d9f563a3826163934 232 Gene3D G3DSA:3.30.1140.32 108 208 4.1E-45 T 10-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0242 a8c1ae57be2a152d9f563a3826163934 232 SUPERFAMILY SSF54821 108 206 1.57E-40 T 10-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0242 a8c1ae57be2a152d9f563a3826163934 232 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 5.2E-98 T 10-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 VF_0242 a8c1ae57be2a152d9f563a3826163934 232 SUPERFAMILY SSF54814 2 106 8.63E-36 T 10-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 VF_0242 a8c1ae57be2a152d9f563a3826163934 232 SMART SM00322 60 125 1.3E-6 T 10-10-2018 IPR004087 K Homology domain GO:0003676 VF_0242 a8c1ae57be2a152d9f563a3826163934 232 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 38.732 T 10-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 VF_0242 a8c1ae57be2a152d9f563a3826163934 232 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 10-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0242 a8c1ae57be2a152d9f563a3826163934 232 Pfam PF07650 KH domain 38 111 1.5E-18 T 10-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0242 a8c1ae57be2a152d9f563a3826163934 232 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 8.4E-42 T 10-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0242 a8c1ae57be2a152d9f563a3826163934 232 Gene3D G3DSA:3.30.300.20 17 107 2.4E-28 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta VF_A0185 a20bdf1ee6d108aaba22c9d997a83ceb 579 Pfam PF14841 FliG middle domain 365 435 3.9E-11 T 10-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain VF_A0185 a20bdf1ee6d108aaba22c9d997a83ceb 579 Gene3D G3DSA:1.10.220.30 444 577 9.8E-17 T 10-10-2018 VF_A0185 a20bdf1ee6d108aaba22c9d997a83ceb 579 Pfam PF01706 FliG C-terminal domain 466 567 1.5E-14 T 10-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal VF_A0185 a20bdf1ee6d108aaba22c9d997a83ceb 579 SUPERFAMILY SSF48029 364 572 4.71E-37 T 10-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical VF_A0185 a20bdf1ee6d108aaba22c9d997a83ceb 579 PRINTS PR00954 Flagellar motor switch protein FliG signature 474 494 2.6E-5 T 10-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VF_A0185 a20bdf1ee6d108aaba22c9d997a83ceb 579 PRINTS PR00954 Flagellar motor switch protein FliG signature 265 281 2.6E-5 T 10-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VF_A0185 a20bdf1ee6d108aaba22c9d997a83ceb 579 PRINTS PR00954 Flagellar motor switch protein FliG signature 443 468 2.6E-5 T 10-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VF_A0185 a20bdf1ee6d108aaba22c9d997a83ceb 579 PRINTS PR00954 Flagellar motor switch protein FliG signature 496 516 2.6E-5 T 10-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VF_A0185 a20bdf1ee6d108aaba22c9d997a83ceb 579 Gene3D G3DSA:1.10.220.30 351 440 3.9E-11 T 10-10-2018 VF_1815 88e0751e5a47ffe5844abfe5391e770a 260 Pfam PF04333 MlaA lipoprotein 44 235 1.2E-63 T 10-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VF_1815 88e0751e5a47ffe5844abfe5391e770a 260 PRINTS PR01805 VacJ lipoprotein signature 45 58 1.4E-30 T 10-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VF_1815 88e0751e5a47ffe5844abfe5391e770a 260 PRINTS PR01805 VacJ lipoprotein signature 151 168 1.4E-30 T 10-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VF_1815 88e0751e5a47ffe5844abfe5391e770a 260 PRINTS PR01805 VacJ lipoprotein signature 114 131 1.4E-30 T 10-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VF_1815 88e0751e5a47ffe5844abfe5391e770a 260 PRINTS PR01805 VacJ lipoprotein signature 63 79 1.4E-30 T 10-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VF_1367 c60097f588b4a6c10a3725fd0c020604 697 Gene3D G3DSA:1.10.3210.10 502 697 5.8E-63 T 10-10-2018 VF_1367 c60097f588b4a6c10a3725fd0c020604 697 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 258 447 2.3E-14 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_1367 c60097f588b4a6c10a3725fd0c020604 697 Gene3D G3DSA:3.40.190.10 17 233 4.3E-21 T 10-10-2018 VF_1367 c60097f588b4a6c10a3725fd0c020604 697 Gene3D G3DSA:3.40.190.10 333 426 2.6E-20 T 10-10-2018 VF_1367 c60097f588b4a6c10a3725fd0c020604 697 Gene3D G3DSA:3.40.190.10 110 199 4.3E-21 T 10-10-2018 VF_1367 c60097f588b4a6c10a3725fd0c020604 697 SUPERFAMILY SSF53850 36 236 7.61E-21 T 10-10-2018 VF_1367 c60097f588b4a6c10a3725fd0c020604 697 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 41 186 1.3E-14 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_1367 c60097f588b4a6c10a3725fd0c020604 697 SMART SM00471 522 656 6.2E-7 T 10-10-2018 IPR003607 HD/PDEase domain VF_1367 c60097f588b4a6c10a3725fd0c020604 697 SUPERFAMILY SSF109604 519 687 1.1E-36 T 10-10-2018 VF_1367 c60097f588b4a6c10a3725fd0c020604 697 Pfam PF01966 HD domain 542 646 1.9E-18 T 10-10-2018 IPR006674 HD domain VF_1367 c60097f588b4a6c10a3725fd0c020604 697 SUPERFAMILY SSF53850 257 448 6.92E-22 T 10-10-2018 VF_1367 c60097f588b4a6c10a3725fd0c020604 697 Gene3D G3DSA:3.40.190.10 256 450 2.6E-20 T 10-10-2018 VF_0480 3a03d237ce3907a19fda29bb3f5fa346 278 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 17 271 3.9E-102 T 10-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 VF_0480 3a03d237ce3907a19fda29bb3f5fa346 278 Gene3D G3DSA:3.20.20.20 1 277 1.6E-109 T 10-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0480 3a03d237ce3907a19fda29bb3f5fa346 278 Pfam PF00809 Pterin binding enzyme 18 257 9.7E-89 T 10-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0480 3a03d237ce3907a19fda29bb3f5fa346 278 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 10-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0480 3a03d237ce3907a19fda29bb3f5fa346 278 SUPERFAMILY SSF51717 4 274 2.22E-103 T 10-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VF_0107 fd1514649d347a9be4f225d795391f96 141 Pfam PF06146 Phosphate-starvation-inducible E 51 117 5.4E-14 T 10-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like VF_0107 fd1514649d347a9be4f225d795391f96 141 PIRSF PIRSF029598 3 135 3.8E-37 T 10-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 VF_A0971 76f93542d8bd9ee0acc70f3aebbc4f1b 259 SMART SM00382 29 216 6.9E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0971 76f93542d8bd9ee0acc70f3aebbc4f1b 259 Pfam PF00005 ABC transporter 20 169 1.4E-31 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0971 76f93542d8bd9ee0acc70f3aebbc4f1b 259 SUPERFAMILY SSF52540 3 235 2.22E-60 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0971 76f93542d8bd9ee0acc70f3aebbc4f1b 259 Gene3D G3DSA:3.40.50.300 1 255 5.1E-67 T 10-10-2018 VF_A0980 d95e43a85daac5648c36baa463d57cc3 127 SUPERFAMILY SSF46689 21 125 5.55E-14 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0980 d95e43a85daac5648c36baa463d57cc3 127 Pfam PF08765 Mor transcription activator family 63 125 2.0E-7 T 10-10-2018 IPR014875 Mor transcription activator VF_2376 0d93f18354b6bceff02215758cec2c27 88 Pfam PF13937 Domain of unknown function (DUF4212) 9 85 1.2E-34 T 10-10-2018 IPR019886 Sodium symporter small subunit, predicted VF_2376 0d93f18354b6bceff02215758cec2c27 88 TIGRFAM TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit 11 87 2.6E-35 T 10-10-2018 IPR019886 Sodium symporter small subunit, predicted VF_0332 9a448fc4f73b0585ef9e992ff13031ce 573 Gene3D G3DSA:2.40.160.50 265 573 2.7E-101 T 10-10-2018 VF_0332 9a448fc4f73b0585ef9e992ff13031ce 573 Pfam PF01103 Surface antigen 283 570 1.5E-33 T 10-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 VF_0332 9a448fc4f73b0585ef9e992ff13031ce 573 Gene3D G3DSA:3.10.20.310 188 264 1.6E-19 T 10-10-2018 VF_0332 9a448fc4f73b0585ef9e992ff13031ce 573 Pfam PF17243 POTRA domain TamA domain 1 25 97 1.8E-17 T 10-10-2018 IPR035243 TamA, POTRA domain 1 VF_0332 9a448fc4f73b0585ef9e992ff13031ce 573 Gene3D G3DSA:3.10.20.310 100 187 6.3E-30 T 10-10-2018 VF_0332 9a448fc4f73b0585ef9e992ff13031ce 573 Gene3D G3DSA:3.10.20.310 21 99 2.6E-21 T 10-10-2018 VF_0332 9a448fc4f73b0585ef9e992ff13031ce 573 Pfam PF07244 Surface antigen variable number repeat 104 184 3.4E-6 T 10-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VF_1131 7a06344572eeecd42625b01003178161 159 Gene3D G3DSA:3.40.50.1010 3 159 6.8E-53 T 10-10-2018 VF_1131 7a06344572eeecd42625b01003178161 159 Pfam PF01936 NYN domain 6 153 5.5E-40 T 10-10-2018 IPR021139 NYN domain, limkain-b1-type VF_2471 13be970f9717862e55c2fed8c890354a 150 Pfam PF08334 Type II secretion system (T2SS), protein G 35 144 4.6E-42 T 10-10-2018 IPR013545 Type II secretion system protein G VF_2471 13be970f9717862e55c2fed8c890354a 150 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 32 1.1E-9 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2471 13be970f9717862e55c2fed8c890354a 150 SUPERFAMILY SSF54523 38 145 1.52E-39 T 10-10-2018 VF_2471 13be970f9717862e55c2fed8c890354a 150 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 32 2.6E-8 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2471 13be970f9717862e55c2fed8c890354a 150 PRINTS PR00813 Bacterial general secretion pathway protein G signature 48 66 1.1E-21 T 10-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 VF_2471 13be970f9717862e55c2fed8c890354a 150 PRINTS PR00813 Bacterial general secretion pathway protein G signature 12 37 1.1E-21 T 10-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 VF_2471 13be970f9717862e55c2fed8c890354a 150 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2471 13be970f9717862e55c2fed8c890354a 150 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 12 145 2.3E-59 T 10-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 VF_2471 13be970f9717862e55c2fed8c890354a 150 Gene3D G3DSA:3.30.700.10 35 144 3.3E-42 T 10-10-2018 VF_1467 cd55e8ba74071c745af747de8c77be49 632 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 SUPERFAMILY SSF100920 383 539 4.71E-59 T 10-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 Pfam PF00012 Hsp70 protein 4 601 3.6E-257 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 SUPERFAMILY SSF100934 534 607 1.92E-5 T 10-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 SUPERFAMILY SSF53067 1 182 4.67E-64 T 10-10-2018 VF_1467 cd55e8ba74071c745af747de8c77be49 632 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 336 350 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 Gene3D G3DSA:1.20.1270.10 523 602 2.3E-26 T 10-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 Gene3D G3DSA:3.30.420.40 5 378 1.5E-163 T 10-10-2018 VF_1467 cd55e8ba74071c745af747de8c77be49 632 Gene3D G3DSA:2.60.34.10 382 522 1.6E-64 T 10-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 Gene3D G3DSA:3.30.420.40 179 365 1.5E-163 T 10-10-2018 VF_1467 cd55e8ba74071c745af747de8c77be49 632 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 2.8E-278 T 10-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 VF_1467 cd55e8ba74071c745af747de8c77be49 632 Gene3D G3DSA:3.90.640.10 228 315 1.5E-163 T 10-10-2018 VF_1467 cd55e8ba74071c745af747de8c77be49 632 PRINTS PR00301 70kDa heat shock protein signature 468 484 6.4E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 PRINTS PR00301 70kDa heat shock protein signature 31 43 6.4E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 PRINTS PR00301 70kDa heat shock protein signature 53 61 6.4E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 PRINTS PR00301 70kDa heat shock protein signature 3 16 6.4E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 PRINTS PR00301 70kDa heat shock protein signature 137 157 6.4E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 PRINTS PR00301 70kDa heat shock protein signature 387 406 6.4E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 PRINTS PR00301 70kDa heat shock protein signature 197 207 6.4E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 PRINTS PR00301 70kDa heat shock protein signature 364 384 6.4E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 PRINTS PR00301 70kDa heat shock protein signature 333 349 6.4E-78 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1467 cd55e8ba74071c745af747de8c77be49 632 SUPERFAMILY SSF53067 186 381 2.78E-64 T 10-10-2018 VF_1467 cd55e8ba74071c745af747de8c77be49 632 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 631 35.526 T 10-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 VF_0738 b3f02159abf32e856ca416d18f19cdf2 152 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 1 152 37.395 T 10-10-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 VF_0738 b3f02159abf32e856ca416d18f19cdf2 152 Gene3D G3DSA:3.40.50.2020 1 152 4.1E-40 T 10-10-2018 VF_0738 b3f02159abf32e856ca416d18f19cdf2 152 SUPERFAMILY SSF53271 4 143 6.32E-29 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like VF_0738 b3f02159abf32e856ca416d18f19cdf2 152 Pfam PF00156 Phosphoribosyl transferase domain 18 144 5.2E-14 T 10-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VF_1686 388f4a82a937e8aab8b5311dc3807a91 111 Pfam PF02575 YbaB/EbfC DNA-binding family 12 102 9.1E-37 T 10-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family VF_1686 388f4a82a937e8aab8b5311dc3807a91 111 SUPERFAMILY SSF82607 12 105 3.27E-36 T 10-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily VF_1686 388f4a82a937e8aab8b5311dc3807a91 111 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 6 100 23.958 T 10-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family VF_1686 388f4a82a937e8aab8b5311dc3807a91 111 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 2 107 1.4E-38 T 10-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family VF_1686 388f4a82a937e8aab8b5311dc3807a91 111 Gene3D G3DSA:3.30.1310.10 1 111 1.1E-47 T 10-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily VF_1686 388f4a82a937e8aab8b5311dc3807a91 111 PIRSF PIRSF004555 4 111 1.3E-40 T 10-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family VF_A0279 4d13127bc90fd9ba16ece04cfc2d96b8 389 SMART SM00671 67 97 80.0 T 10-10-2018 IPR006597 Sel1-like repeat VF_A0279 4d13127bc90fd9ba16ece04cfc2d96b8 389 SMART SM00671 207 242 4.4E-7 T 10-10-2018 IPR006597 Sel1-like repeat VF_A0279 4d13127bc90fd9ba16ece04cfc2d96b8 389 SMART SM00671 171 206 44.0 T 10-10-2018 IPR006597 Sel1-like repeat VF_A0279 4d13127bc90fd9ba16ece04cfc2d96b8 389 SMART SM00671 243 276 130.0 T 10-10-2018 IPR006597 Sel1-like repeat VF_A0279 4d13127bc90fd9ba16ece04cfc2d96b8 389 SMART SM00671 135 170 0.11 T 10-10-2018 IPR006597 Sel1-like repeat VF_A0279 4d13127bc90fd9ba16ece04cfc2d96b8 389 Gene3D G3DSA:1.25.40.10 19 330 6.9E-34 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0279 4d13127bc90fd9ba16ece04cfc2d96b8 389 SUPERFAMILY SSF81901 65 282 7.59E-29 T 10-10-2018 VF_A0279 4d13127bc90fd9ba16ece04cfc2d96b8 389 Pfam PF08238 Sel1 repeat 189 206 250.0 T 10-10-2018 IPR006597 Sel1-like repeat VF_A0279 4d13127bc90fd9ba16ece04cfc2d96b8 389 Pfam PF08238 Sel1 repeat 81 97 0.042 T 10-10-2018 IPR006597 Sel1-like repeat VF_A0279 4d13127bc90fd9ba16ece04cfc2d96b8 389 Pfam PF08238 Sel1 repeat 208 242 3.0E-4 T 10-10-2018 IPR006597 Sel1-like repeat VF_A0279 4d13127bc90fd9ba16ece04cfc2d96b8 389 Pfam PF08238 Sel1 repeat 140 170 0.061 T 10-10-2018 IPR006597 Sel1-like repeat VF_2125 a678bf8880357b04fa1e5b217959e246 490 SUPERFAMILY SSF51971 143 407 3.53E-64 T 10-10-2018 VF_2125 a678bf8880357b04fa1e5b217959e246 490 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 478 2.4E-196 T 10-10-2018 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 VF_2125 a678bf8880357b04fa1e5b217959e246 490 Gene3D G3DSA:3.40.50.720 145 251 2.0E-14 T 10-10-2018 VF_2125 a678bf8880357b04fa1e5b217959e246 490 PRINTS PR00419 Adrenodoxin reductase family signature 169 182 7.1E-24 T 10-10-2018 VF_2125 a678bf8880357b04fa1e5b217959e246 490 PRINTS PR00419 Adrenodoxin reductase family signature 211 221 7.1E-24 T 10-10-2018 VF_2125 a678bf8880357b04fa1e5b217959e246 490 PRINTS PR00419 Adrenodoxin reductase family signature 146 168 7.1E-24 T 10-10-2018 VF_2125 a678bf8880357b04fa1e5b217959e246 490 PRINTS PR00419 Adrenodoxin reductase family signature 286 300 7.1E-24 T 10-10-2018 VF_2125 a678bf8880357b04fa1e5b217959e246 490 Gene3D G3DSA:3.50.50.60 252 406 1.2E-36 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2125 a678bf8880357b04fa1e5b217959e246 490 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 38 131 2.5E-24 T 10-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 VF_2125 a678bf8880357b04fa1e5b217959e246 490 Gene3D G3DSA:1.10.1060.10 12 144 9.3E-25 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_2125 a678bf8880357b04fa1e5b217959e246 490 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 146 459 1.6E-23 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VF_2125 a678bf8880357b04fa1e5b217959e246 490 SUPERFAMILY SSF46548 2 155 4.39E-36 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_2125 a678bf8880357b04fa1e5b217959e246 490 SUPERFAMILY SSF51971 389 474 2.24E-8 T 10-10-2018 VF_1511 c53a890d4f40013d910c958a3a5ffd38 634 Pfam PF00149 Calcineurin-like phosphoesterase 29 247 4.4E-14 T 10-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VF_1511 c53a890d4f40013d910c958a3a5ffd38 634 Gene3D G3DSA:3.90.780.10 330 540 1.8E-29 T 10-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_1511 c53a890d4f40013d910c958a3a5ffd38 634 Gene3D G3DSA:3.60.21.10 20 324 2.8E-77 T 10-10-2018 IPR029052 Metallo-dependent phosphatase-like VF_1511 c53a890d4f40013d910c958a3a5ffd38 634 ProSitePatterns PS00786 5'-nucleotidase signature 2. 107 118 - T 10-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_1511 c53a890d4f40013d910c958a3a5ffd38 634 Pfam PF02872 5'-nucleotidase, C-terminal domain 342 492 7.8E-19 T 10-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_1511 c53a890d4f40013d910c958a3a5ffd38 634 PRINTS PR01607 Apyrase family signature 26 44 4.0E-14 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_1511 c53a890d4f40013d910c958a3a5ffd38 634 PRINTS PR01607 Apyrase family signature 230 253 4.0E-14 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_1511 c53a890d4f40013d910c958a3a5ffd38 634 PRINTS PR01607 Apyrase family signature 257 277 4.0E-14 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_1511 c53a890d4f40013d910c958a3a5ffd38 634 PRINTS PR01607 Apyrase family signature 203 220 4.0E-14 T 10-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_1511 c53a890d4f40013d910c958a3a5ffd38 634 SUPERFAMILY SSF55816 341 551 3.14E-23 T 10-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VF_1511 c53a890d4f40013d910c958a3a5ffd38 634 SUPERFAMILY SSF56300 19 326 1.21E-77 T 10-10-2018 VF_1378 1c3edd49c7f00af0b79c976708cd8565 297 Gene3D G3DSA:3.40.190.290 92 277 1.2E-22 T 10-10-2018 VF_1378 1c3edd49c7f00af0b79c976708cd8565 297 Pfam PF03466 LysR substrate binding domain 87 270 7.0E-33 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1378 1c3edd49c7f00af0b79c976708cd8565 297 SUPERFAMILY SSF53850 89 270 2.33E-32 T 10-10-2018 VF_1378 1c3edd49c7f00af0b79c976708cd8565 297 SUPERFAMILY SSF46785 1 110 1.63E-23 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1378 1c3edd49c7f00af0b79c976708cd8565 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.2E-19 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1378 1c3edd49c7f00af0b79c976708cd8565 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 5.7E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1378 1c3edd49c7f00af0b79c976708cd8565 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 5.7E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1378 1c3edd49c7f00af0b79c976708cd8565 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 5.7E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1378 1c3edd49c7f00af0b79c976708cd8565 297 Gene3D G3DSA:1.10.10.10 2 91 7.5E-24 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0973 f65bed13e66b7e193c8c466f429fcf64 532 Gene3D G3DSA:3.30.590.20 23 525 8.2E-164 T 10-10-2018 VF_0973 f65bed13e66b7e193c8c466f429fcf64 532 Pfam PF04262 Glutamate-cysteine ligase 14 380 1.6E-138 T 10-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VF_0973 f65bed13e66b7e193c8c466f429fcf64 532 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 532 166.255 T 10-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VF_0973 f65bed13e66b7e193c8c466f429fcf64 532 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 21 518 2.6E-143 T 10-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VF_0973 f65bed13e66b7e193c8c466f429fcf64 532 SUPERFAMILY SSF55931 12 515 1.5E-160 T 10-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 VF_A0156 ec42cb753749f29c9e23e8981b0587f2 243 TIGRFAM TIGR03950 sidero_Fe_reduc: siderophore ferric iron reductase, AHA_1954 family 10 237 3.9E-92 T 10-10-2018 IPR023998 Siderophore ferric iron reductase, AHA1954 family VF_A0156 ec42cb753749f29c9e23e8981b0587f2 243 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 217 237 2.9E-4 T 10-10-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 VF_2467 983be05b867c7593b2f69c6e61620145 344 SUPERFAMILY SSF54523 44 333 6.91E-33 T 10-10-2018 VF_2467 983be05b867c7593b2f69c6e61620145 344 Pfam PF03934 Type II secretion system (T2SS), protein K 38 325 8.1E-85 T 10-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 VF_2467 983be05b867c7593b2f69c6e61620145 344 SUPERFAMILY SSF158544 223 292 9.94E-19 T 10-10-2018 IPR038072 GspK, central domain superfamily VF_2467 983be05b867c7593b2f69c6e61620145 344 PIRSF PIRSF002786 8 336 1.8E-66 T 10-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 VF_2467 983be05b867c7593b2f69c6e61620145 344 SUPERFAMILY SSF158544 109 221 1.1E-31 T 10-10-2018 IPR038072 GspK, central domain superfamily VF_2467 983be05b867c7593b2f69c6e61620145 344 Gene3D G3DSA:3.30.1300.30 50 317 8.2E-87 T 10-10-2018 VF_2467 983be05b867c7593b2f69c6e61620145 344 Gene3D G3DSA:1.10.40.60 107 223 8.2E-87 T 10-10-2018 IPR038072 GspK, central domain superfamily VF_2467 983be05b867c7593b2f69c6e61620145 344 Gene3D G3DSA:1.10.40.60 224 293 8.2E-87 T 10-10-2018 IPR038072 GspK, central domain superfamily VF_2387 6abbc592f81f966dc67693a14c4d2bdc 447 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 5.7E-43 T 10-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VF_2387 6abbc592f81f966dc67693a14c4d2bdc 447 SUPERFAMILY SSF51246 331 444 3.51E-41 T 10-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 VF_2387 6abbc592f81f966dc67693a14c4d2bdc 447 Gene3D G3DSA:3.30.1490.20 131 203 1.1E-154 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VF_2387 6abbc592f81f966dc67693a14c4d2bdc 447 Gene3D G3DSA:3.40.50.20 1 85 2.1E-33 T 10-10-2018 VF_2387 6abbc592f81f966dc67693a14c4d2bdc 447 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 445 2.4E-240 T 10-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 VF_2387 6abbc592f81f966dc67693a14c4d2bdc 447 SUPERFAMILY SSF56059 83 348 1.08E-70 T 10-10-2018 VF_2387 6abbc592f81f966dc67693a14c4d2bdc 447 SUPERFAMILY SSF52440 1 113 1.73E-45 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VF_2387 6abbc592f81f966dc67693a14c4d2bdc 447 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VF_2387 6abbc592f81f966dc67693a14c4d2bdc 447 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 5.3E-84 T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VF_2387 6abbc592f81f966dc67693a14c4d2bdc 447 Gene3D G3DSA:3.30.470.20 86 433 1.1E-154 T 10-10-2018 VF_2387 6abbc592f81f966dc67693a14c4d2bdc 447 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VF_2387 6abbc592f81f966dc67693a14c4d2bdc 447 SMART SM00878 336 441 1.2E-62 T 10-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VF_2387 6abbc592f81f966dc67693a14c4d2bdc 447 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 7.4E-36 T 10-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VF_1027 e237662b44514779c9fedfc123502159 268 Gene3D G3DSA:3.20.20.70 1 268 4.9E-95 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1027 e237662b44514779c9fedfc123502159 268 Pfam PF00290 Tryptophan synthase alpha chain 8 266 8.8E-94 T 10-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VF_1027 e237662b44514779c9fedfc123502159 268 SUPERFAMILY SSF51366 1 266 4.99E-91 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VF_1027 e237662b44514779c9fedfc123502159 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 2.8E-99 T 10-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VF_1027 e237662b44514779c9fedfc123502159 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 37.386 T 10-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VF_1027 e237662b44514779c9fedfc123502159 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 10-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VF_0806 bc7ac27c6e9a5ea53015eba59d21c48e 404 SUPERFAMILY SSF53067 85 392 4.65E-54 T 10-10-2018 VF_0806 bc7ac27c6e9a5ea53015eba59d21c48e 404 Gene3D G3DSA:3.30.420.40 90 383 5.6E-89 T 10-10-2018 VF_0806 bc7ac27c6e9a5ea53015eba59d21c48e 404 Gene3D G3DSA:3.30.420.40 207 376 5.6E-89 T 10-10-2018 VF_0806 bc7ac27c6e9a5ea53015eba59d21c48e 404 ProSitePatterns PS01125 ROK family signature. 217 244 - T 10-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VF_0806 bc7ac27c6e9a5ea53015eba59d21c48e 404 Pfam PF01047 MarR family 22 60 2.2E-6 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VF_0806 bc7ac27c6e9a5ea53015eba59d21c48e 404 SUPERFAMILY SSF46785 11 75 1.94E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0806 bc7ac27c6e9a5ea53015eba59d21c48e 404 Gene3D G3DSA:1.10.10.10 2 79 1.8E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0806 bc7ac27c6e9a5ea53015eba59d21c48e 404 Pfam PF00480 ROK family 86 390 1.1E-73 T 10-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VF_2274 10873cef36ee2bad825db6f9cab2708c 737 Hamap MF_00983 Probable primosomal protein N' [priA]. 12 736 25.215 T 10-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 VF_2274 10873cef36ee2bad825db6f9cab2708c 737 SMART SM00490 496 593 4.3E-10 T 10-10-2018 IPR001650 Helicase, C-terminal VF_2274 10873cef36ee2bad825db6f9cab2708c 737 TIGRFAM TIGR00595 priA: primosomal protein N' 225 733 2.4E-190 T 10-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 VF_2274 10873cef36ee2bad825db6f9cab2708c 737 Pfam PF00271 Helicase conserved C-terminal domain 517 592 7.8E-7 T 10-10-2018 IPR001650 Helicase, C-terminal VF_2274 10873cef36ee2bad825db6f9cab2708c 737 SUPERFAMILY SSF52540 78 382 6.68E-42 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2274 10873cef36ee2bad825db6f9cab2708c 737 SMART SM00487 200 398 2.1E-18 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_2274 10873cef36ee2bad825db6f9cab2708c 737 Gene3D G3DSA:3.40.50.300 189 383 1.3E-76 T 10-10-2018 VF_2274 10873cef36ee2bad825db6f9cab2708c 737 Gene3D G3DSA:1.10.8.630 8 117 7.4E-34 T 10-10-2018 VF_2274 10873cef36ee2bad825db6f9cab2708c 737 SUPERFAMILY SSF52540 465 618 9.1E-26 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2274 10873cef36ee2bad825db6f9cab2708c 737 Pfam PF00270 DEAD/DEAH box helicase 222 368 1.7E-14 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_0603 cfa4afded7f323164573ff507e002013 451 Pfam PF02378 Phosphotransferase system, EIIC 37 367 6.0E-61 T 10-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VF_0603 cfa4afded7f323164573ff507e002013 451 PIRSF PIRSF006351 9 449 3.1E-126 T 10-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 VF_0603 cfa4afded7f323164573ff507e002013 451 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 21 439 1.1E-113 T 10-10-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 VF_1068 cabef2822804fefce395145a5275f1c1 288 PIRSF PIRSF006232 7 288 5.3E-93 T 10-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 VF_1068 cabef2822804fefce395145a5275f1c1 288 Gene3D G3DSA:2.60.120.10 148 257 2.8E-96 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_1068 cabef2822804fefce395145a5275f1c1 288 Pfam PF05726 Pirin C-terminal cupin domain 182 287 3.1E-30 T 10-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 VF_1068 cabef2822804fefce395145a5275f1c1 288 Pfam PF02678 Pirin 26 126 5.1E-36 T 10-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 VF_1068 cabef2822804fefce395145a5275f1c1 288 SUPERFAMILY SSF51182 9 287 9.53E-85 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_1068 cabef2822804fefce395145a5275f1c1 288 Gene3D G3DSA:2.60.120.10 22 283 2.8E-96 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_0728 f99200990bd867fe20e75e6ede6661cc 210 PIRSF PIRSF006102 3 210 3.2E-72 T 10-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VF_0728 f99200990bd867fe20e75e6ede6661cc 210 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 2 207 36.666 T 10-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 VF_0728 f99200990bd867fe20e75e6ede6661cc 210 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 3 207 6.2E-107 T 10-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 VF_0728 f99200990bd867fe20e75e6ede6661cc 210 Pfam PF02508 Rnf-Nqr subunit, membrane protein 9 195 6.4E-62 T 10-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VF_2394 3b5ef2e6436f34502ea710f5b2a3ee9a 530 PIRSF PIRSF000414 1 530 7.3E-230 T 10-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VF_2394 3b5ef2e6436f34502ea710f5b2a3ee9a 530 Gene3D G3DSA:3.40.140.20 394 530 5.0E-60 T 10-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VF_2394 3b5ef2e6436f34502ea710f5b2a3ee9a 530 Gene3D G3DSA:3.40.140.20 219 375 5.9E-59 T 10-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VF_2394 3b5ef2e6436f34502ea710f5b2a3ee9a 530 Pfam PF02142 MGS-like domain 19 132 3.0E-31 T 10-10-2018 IPR011607 Methylglyoxal synthase-like domain VF_2394 3b5ef2e6436f34502ea710f5b2a3ee9a 530 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 530 4.6E-261 T 10-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VF_2394 3b5ef2e6436f34502ea710f5b2a3ee9a 530 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 461 2.0E-120 T 10-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VF_2394 3b5ef2e6436f34502ea710f5b2a3ee9a 530 SUPERFAMILY SSF52335 7 197 3.79E-72 T 10-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VF_2394 3b5ef2e6436f34502ea710f5b2a3ee9a 530 Gene3D G3DSA:3.40.50.1380 1 200 6.1E-88 T 10-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VF_2394 3b5ef2e6436f34502ea710f5b2a3ee9a 530 SMART SM00798 137 462 7.0E-219 T 10-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VF_2394 3b5ef2e6436f34502ea710f5b2a3ee9a 530 SUPERFAMILY SSF53927 222 530 5.72E-131 T 10-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VF_2394 3b5ef2e6436f34502ea710f5b2a3ee9a 530 SMART SM00851 19 132 2.3E-61 T 10-10-2018 IPR011607 Methylglyoxal synthase-like domain VF_2394 3b5ef2e6436f34502ea710f5b2a3ee9a 530 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 530 45.91 T 10-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VF_1523 dd87321b4c5f673899838b3625834399 138 Gene3D G3DSA:3.10.580.10 1 129 8.0E-29 T 10-10-2018 VF_1523 dd87321b4c5f673899838b3625834399 138 Pfam PF00571 CBS domain 6 61 6.2E-8 T 10-10-2018 IPR000644 CBS domain VF_1523 dd87321b4c5f673899838b3625834399 138 Pfam PF00571 CBS domain 73 127 9.0E-14 T 10-10-2018 IPR000644 CBS domain VF_1523 dd87321b4c5f673899838b3625834399 138 SUPERFAMILY SSF54631 1 126 3.28E-31 T 10-10-2018 VF_1523 dd87321b4c5f673899838b3625834399 138 SMART SM00116 13 61 5.9E-4 T 10-10-2018 IPR000644 CBS domain VF_1523 dd87321b4c5f673899838b3625834399 138 SMART SM00116 80 127 2.9E-7 T 10-10-2018 IPR000644 CBS domain VF_0281 29980cea2526b5cc2e198efbb7e784b0 256 Pfam PF06738 Putative threonine/serine exporter 10 247 6.1E-67 T 10-10-2018 IPR010619 Putative threonine/serine exporter VF_0553 be899bede9b5cc83906dd5ca8ef9f1f4 357 PIRSF PIRSF001361 1 354 2.9E-162 T 10-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VF_0553 be899bede9b5cc83906dd5ca8ef9f1f4 357 Gene3D G3DSA:3.20.20.70 3 349 1.9E-155 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0553 be899bede9b5cc83906dd5ca8ef9f1f4 357 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 9 347 1.4E-160 T 10-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VF_0553 be899bede9b5cc83906dd5ca8ef9f1f4 357 Pfam PF00793 DAHP synthetase I family 41 340 3.2E-102 T 10-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VF_0553 be899bede9b5cc83906dd5ca8ef9f1f4 357 SUPERFAMILY SSF51569 8 345 1.56E-137 T 10-10-2018 VF_2324 5e64c670110c0c575e1d8ab302cb0dcd 310 SUPERFAMILY SSF52540 9 152 5.4E-19 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2324 5e64c670110c0c575e1d8ab302cb0dcd 310 Gene3D G3DSA:3.40.50.300 12 292 2.9E-106 T 10-10-2018 VF_2324 5e64c670110c0c575e1d8ab302cb0dcd 310 Pfam PF01715 IPP transferase 42 287 8.3E-85 T 10-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 VF_2324 5e64c670110c0c575e1d8ab302cb0dcd 310 Gene3D G3DSA:1.10.20.140 115 186 2.9E-106 T 10-10-2018 VF_2324 5e64c670110c0c575e1d8ab302cb0dcd 310 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 8 308 29.613 T 10-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 VF_2324 5e64c670110c0c575e1d8ab302cb0dcd 310 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 8 295 6.4E-116 T 10-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 VF_0842 a27fd938c601a71742b31f012429d1f5 355 Gene3D G3DSA:3.40.50.150 166 350 1.2E-112 T 10-10-2018 VF_0842 a27fd938c601a71742b31f012429d1f5 355 Gene3D G3DSA:1.20.58.1390 101 315 1.2E-112 T 10-10-2018 VF_0842 a27fd938c601a71742b31f012429d1f5 355 PIRSF PIRSF005739 2 352 1.6E-9 T 10-10-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 VF_0842 a27fd938c601a71742b31f012429d1f5 355 Gene3D G3DSA:1.10.10.10 1 98 2.0E-32 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0842 a27fd938c601a71742b31f012429d1f5 355 SUPERFAMILY SSF46785 19 99 7.26E-9 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0842 a27fd938c601a71742b31f012429d1f5 355 SUPERFAMILY SSF53335 99 339 7.31E-36 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_0842 a27fd938c601a71742b31f012429d1f5 355 Pfam PF00891 O-methyltransferase 172 336 3.5E-15 T 10-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 PRINTS PR00958 Homoserine kinase signature 103 118 1.3E-30 T 10-10-2018 VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 PRINTS PR00958 Homoserine kinase signature 143 156 1.3E-30 T 10-10-2018 VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 PRINTS PR00958 Homoserine kinase signature 181 198 1.3E-30 T 10-10-2018 VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 PRINTS PR00958 Homoserine kinase signature 10 25 1.3E-30 T 10-10-2018 VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 PRINTS PR00958 Homoserine kinase signature 260 275 1.3E-30 T 10-10-2018 VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 SUPERFAMILY SSF55060 178 295 1.9E-31 T 10-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 PIRSF PIRSF000676 1 316 7.8E-77 T 10-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 Gene3D G3DSA:3.30.70.890 174 282 7.8E-87 T 10-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 TIGRFAM TIGR00191 thrB: homoserine kinase 3 314 1.8E-107 T 10-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 96 107 - T 10-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 Pfam PF00288 GHMP kinases N terminal domain 90 156 2.2E-13 T 10-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 Gene3D G3DSA:3.30.230.10 5 173 7.8E-87 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 SUPERFAMILY SSF54211 3 191 4.25E-33 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 Pfam PF08544 GHMP kinases C terminal 219 294 2.3E-9 T 10-10-2018 IPR013750 GHMP kinase, C-terminal domain VF_2117 4862c45e9524a078d85f08951b8a8fb3 318 Hamap MF_00384 Homoserine kinase [thrB]. 5 314 28.534 T 10-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 VF_1894 8c3eebf1b635e5185aaf7d3b40b9f12e 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 10-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site VF_1894 8c3eebf1b635e5185aaf7d3b40b9f12e 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 4.9E-28 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_1894 8c3eebf1b635e5185aaf7d3b40b9f12e 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 5.5E-18 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_1894 8c3eebf1b635e5185aaf7d3b40b9f12e 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 5.5E-18 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_1894 8c3eebf1b635e5185aaf7d3b40b9f12e 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 5.5E-18 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_1894 8c3eebf1b635e5185aaf7d3b40b9f12e 85 SUPERFAMILY SSF55594 1 82 9.81E-26 T 10-10-2018 IPR035895 HPr-like superfamily VF_1894 8c3eebf1b635e5185aaf7d3b40b9f12e 85 Gene3D G3DSA:3.30.1340.10 1 85 2.8E-31 T 10-10-2018 IPR035895 HPr-like superfamily VF_1894 8c3eebf1b635e5185aaf7d3b40b9f12e 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 3.5E-27 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_0271 3c0c403ceaad1e60bd83a0c7a6e722dd 245 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 60 74 - T 10-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0271 3c0c403ceaad1e60bd83a0c7a6e722dd 245 SUPERFAMILY SSF55120 7 216 4.32E-65 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0271 3c0c403ceaad1e60bd83a0c7a6e722dd 245 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 8 207 4.2E-58 T 10-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0271 3c0c403ceaad1e60bd83a0c7a6e722dd 245 Pfam PF00849 RNA pseudouridylate synthase 23 168 1.5E-27 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0271 3c0c403ceaad1e60bd83a0c7a6e722dd 245 Gene3D G3DSA:3.30.2350.10 4 217 1.5E-68 T 10-10-2018 VF_2265 6900f29b0640ba08b1af0e15036bf091 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 59 70 8.1E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2265 6900f29b0640ba08b1af0e15036bf091 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 8.1E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2265 6900f29b0640ba08b1af0e15036bf091 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 59 8.1E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2265 6900f29b0640ba08b1af0e15036bf091 323 Gene3D G3DSA:1.10.10.10 12 102 3.1E-31 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2265 6900f29b0640ba08b1af0e15036bf091 323 Gene3D G3DSA:3.40.190.10 185 281 1.7E-38 T 10-10-2018 VF_2265 6900f29b0640ba08b1af0e15036bf091 323 SUPERFAMILY SSF53850 104 307 1.1E-37 T 10-10-2018 VF_2265 6900f29b0640ba08b1af0e15036bf091 323 Pfam PF03466 LysR substrate binding domain 115 292 8.9E-19 T 10-10-2018 IPR005119 LysR, substrate-binding VF_2265 6900f29b0640ba08b1af0e15036bf091 323 SUPERFAMILY SSF46785 19 97 1.72E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_2265 6900f29b0640ba08b1af0e15036bf091 323 Gene3D G3DSA:3.40.190.10 104 305 1.7E-38 T 10-10-2018 VF_2265 6900f29b0640ba08b1af0e15036bf091 323 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 23 82 1.2E-19 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0606 efae7cfe54c2bfb02547aedb5536ba82 311 Pfam PF00480 ROK family 4 301 5.8E-53 T 10-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VF_0606 efae7cfe54c2bfb02547aedb5536ba82 311 Gene3D G3DSA:3.30.420.40 5 299 1.4E-75 T 10-10-2018 VF_0606 efae7cfe54c2bfb02547aedb5536ba82 311 Gene3D G3DSA:3.30.420.40 122 289 1.4E-75 T 10-10-2018 VF_0606 efae7cfe54c2bfb02547aedb5536ba82 311 SUPERFAMILY SSF53067 1 305 1.57E-55 T 10-10-2018 VF_0409 42dab550925801a83a6969591440a135 138 SUPERFAMILY SSF89946 8 128 1.01E-36 T 10-10-2018 IPR036701 RraB-like superfamily VF_0409 42dab550925801a83a6969591440a135 138 Pfam PF06877 Regulator of ribonuclease activity B 19 120 1.5E-31 T 10-10-2018 IPR009671 Regulator of ribonuclease activity B domain VF_0409 42dab550925801a83a6969591440a135 138 PIRSF PIRSF018193 8 138 1.8E-56 T 10-10-2018 IPR016716 Regulator of ribonuclease activity B VF_0409 42dab550925801a83a6969591440a135 138 Gene3D G3DSA:3.30.70.970 1 131 3.7E-54 T 10-10-2018 IPR036701 RraB-like superfamily VF_0409 42dab550925801a83a6969591440a135 138 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 11 124 29.845 T 10-10-2018 IPR016716 Regulator of ribonuclease activity B VF_1690 96e2bac6610bc2110eeb5177bed345d4 291 SUPERFAMILY SSF53850 88 290 6.05E-37 T 10-10-2018 VF_1690 96e2bac6610bc2110eeb5177bed345d4 291 SUPERFAMILY SSF46785 1 81 2.16E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1690 96e2bac6610bc2110eeb5177bed345d4 291 Gene3D G3DSA:1.10.10.10 1 89 2.1E-28 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1690 96e2bac6610bc2110eeb5177bed345d4 291 Pfam PF03466 LysR substrate binding domain 88 288 8.4E-39 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1690 96e2bac6610bc2110eeb5177bed345d4 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 7.3E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1690 96e2bac6610bc2110eeb5177bed345d4 291 Gene3D G3DSA:3.40.190.290 90 289 9.0E-70 T 10-10-2018 VF_2309 47900ffdb55ec7ce04b2affad472c67d 295 Gene3D G3DSA:3.20.20.220 1 295 4.2E-113 T 10-10-2018 VF_2309 47900ffdb55ec7ce04b2affad472c67d 295 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 25 290 1.2E-102 T 10-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 VF_2309 47900ffdb55ec7ce04b2affad472c67d 295 SUPERFAMILY SSF51730 22 294 9.02E-95 T 10-10-2018 IPR029041 FAD-linked oxidoreductase-like VF_2309 47900ffdb55ec7ce04b2affad472c67d 295 Pfam PF02219 Methylenetetrahydrofolate reductase 17 291 7.4E-103 T 10-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 VF_1774 be247f019158251aa73623661315e925 505 Pfam PF04293 SpoVR like protein 12 442 3.7E-178 T 10-10-2018 IPR007390 Sporulation stage V, protein R VF_2306 ddffee1a412640e1d86d07cf6b0006ba 334 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 334 37.851 T 10-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VF_2306 ddffee1a412640e1d86d07cf6b0006ba 334 SUPERFAMILY SSF51735 2 181 3.08E-42 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_2306 ddffee1a412640e1d86d07cf6b0006ba 334 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 149 165 - T 10-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VF_2306 ddffee1a412640e1d86d07cf6b0006ba 334 Gene3D G3DSA:3.30.360.10 153 312 3.2E-121 T 10-10-2018 VF_2306 ddffee1a412640e1d86d07cf6b0006ba 334 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 163 311 9.9E-14 T 10-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VF_2306 ddffee1a412640e1d86d07cf6b0006ba 334 SMART SM00859 3 146 3.4E-47 T 10-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VF_2306 ddffee1a412640e1d86d07cf6b0006ba 334 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 333 2.1E-120 T 10-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VF_2306 ddffee1a412640e1d86d07cf6b0006ba 334 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 146 7.7E-31 T 10-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VF_2306 ddffee1a412640e1d86d07cf6b0006ba 334 Gene3D G3DSA:3.40.50.720 6 328 3.2E-121 T 10-10-2018 VF_2306 ddffee1a412640e1d86d07cf6b0006ba 334 SUPERFAMILY SSF55347 154 308 7.72E-50 T 10-10-2018 VF_1207 926c98357cffe01fa51c2fdd1f7953d8 450 Pfam PF00012 Hsp70 protein 129 229 2.6E-8 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1207 926c98357cffe01fa51c2fdd1f7953d8 450 Gene3D G3DSA:3.30.420.40 379 433 3.5E-11 T 10-10-2018 VF_1207 926c98357cffe01fa51c2fdd1f7953d8 450 Gene3D G3DSA:3.90.640.10 330 378 3.5E-11 T 10-10-2018 VF_1207 926c98357cffe01fa51c2fdd1f7953d8 450 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 213 226 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VF_1207 926c98357cffe01fa51c2fdd1f7953d8 450 SUPERFAMILY SSF53067 207 446 6.48E-32 T 10-10-2018 VF_1207 926c98357cffe01fa51c2fdd1f7953d8 450 SUPERFAMILY SSF53067 1 205 7.02E-25 T 10-10-2018 VF_1545 4172fc57b677874e830e46ef89253cd4 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.4E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1545 4172fc57b677874e830e46ef89253cd4 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.4E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1545 4172fc57b677874e830e46ef89253cd4 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.4E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1545 4172fc57b677874e830e46ef89253cd4 293 Gene3D G3DSA:3.40.190.10 263 280 1.2E-5 T 10-10-2018 VF_1545 4172fc57b677874e830e46ef89253cd4 293 Gene3D G3DSA:3.40.190.10 209 262 1.2E-5 T 10-10-2018 VF_1545 4172fc57b677874e830e46ef89253cd4 293 Gene3D G3DSA:1.10.10.10 1 87 8.8E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1545 4172fc57b677874e830e46ef89253cd4 293 SUPERFAMILY SSF46785 5 88 8.68E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1545 4172fc57b677874e830e46ef89253cd4 293 Pfam PF03466 LysR substrate binding domain 93 284 3.1E-17 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1545 4172fc57b677874e830e46ef89253cd4 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 9.9E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1545 4172fc57b677874e830e46ef89253cd4 293 SUPERFAMILY SSF53850 91 288 3.44E-15 T 10-10-2018 VF_2337 113a538a9c9a50fc0716accc49c080d5 140 ProDom PD015693 FUMARATE MEMBRANE REDUCTASE D SUBUNIT INNER TRANSMEMBRANE HYDROPHOBIC REDUCTASE POLYPEPTIDE 24 140 3.0E-40 T 10-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 VF_2337 113a538a9c9a50fc0716accc49c080d5 140 PIRSF PIRSF000179 21 140 4.5E-57 T 10-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 VF_2337 113a538a9c9a50fc0716accc49c080d5 140 Gene3D G3DSA:1.20.1300.10 21 140 1.2E-43 T 10-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2337 113a538a9c9a50fc0716accc49c080d5 140 Hamap MF_00709 Fumarate reductase subunit D [frdD]. 22 140 23.922 T 10-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 VF_2337 113a538a9c9a50fc0716accc49c080d5 140 Pfam PF02313 Fumarate reductase subunit D 26 138 8.5E-45 T 10-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 VF_2337 113a538a9c9a50fc0716accc49c080d5 140 SUPERFAMILY SSF81343 22 140 5.89E-50 T 10-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_A1006 6a8d1dffeaa954ebb8f2e799fc5d975a 258 SMART SM00420 7 59 1.1E-14 T 10-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VF_A1006 6a8d1dffeaa954ebb8f2e799fc5d975a 258 Pfam PF08220 DeoR-like helix-turn-helix domain 7 58 8.1E-15 T 10-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VF_A1006 6a8d1dffeaa954ebb8f2e799fc5d975a 258 Pfam PF00455 DeoR C terminal sensor domain 76 234 3.8E-52 T 10-10-2018 IPR014036 DeoR C-terminal sensor domain VF_A1006 6a8d1dffeaa954ebb8f2e799fc5d975a 258 Gene3D G3DSA:1.10.10.10 1 58 1.9E-6 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1006 6a8d1dffeaa954ebb8f2e799fc5d975a 258 SUPERFAMILY SSF46785 6 59 7.1E-13 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A1006 6a8d1dffeaa954ebb8f2e799fc5d975a 258 SUPERFAMILY SSF100950 76 237 7.64E-31 T 10-10-2018 IPR037171 NagB/RpiA transferase-like VF_A1006 6a8d1dffeaa954ebb8f2e799fc5d975a 258 SMART SM01134 74 235 4.6E-66 T 10-10-2018 VF_A0165 5b6a756827ccadffe51c3d190ac561b4 724 SUPERFAMILY SSF56935 39 723 3.52E-86 T 10-10-2018 VF_A0165 5b6a756827ccadffe51c3d190ac561b4 724 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 155 1.6E-17 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain VF_A0165 5b6a756827ccadffe51c3d190ac561b4 724 Gene3D G3DSA:2.40.170.20 166 724 7.7E-45 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VF_A0165 5b6a756827ccadffe51c3d190ac561b4 724 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 54 722 2.4E-79 T 10-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 VF_A0165 5b6a756827ccadffe51c3d190ac561b4 724 Gene3D G3DSA:2.170.130.10 34 160 1.4E-22 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VF_A0165 5b6a756827ccadffe51c3d190ac561b4 724 Pfam PF00593 TonB dependent receptor 246 723 6.3E-24 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VF_2135 37d850e47a4950800cd5e0b021510f17 431 Gene3D G3DSA:3.90.1150.10 7 418 4.7E-176 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_2135 37d850e47a4950800cd5e0b021510f17 431 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VF_2135 37d850e47a4950800cd5e0b021510f17 431 Pfam PF00202 Aminotransferase class-III 33 395 1.8E-76 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VF_2135 37d850e47a4950800cd5e0b021510f17 431 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 104.009 T 10-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 VF_2135 37d850e47a4950800cd5e0b021510f17 431 Gene3D G3DSA:3.40.640.10 69 317 4.7E-176 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_2135 37d850e47a4950800cd5e0b021510f17 431 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 3 424 2.0E-193 T 10-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 VF_2135 37d850e47a4950800cd5e0b021510f17 431 SUPERFAMILY SSF53383 1 423 1.55E-132 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_A0813 4f542e26286d4d2694ec76763083dd99 282 Gene3D G3DSA:1.20.1080.10 1 265 1.3E-92 T 10-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VF_A0813 4f542e26286d4d2694ec76763083dd99 282 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 80 89 - T 10-10-2018 IPR024002 Formate/nitrite transporter, conserved site VF_A0813 4f542e26286d4d2694ec76763083dd99 282 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 23 277 1.0E-78 T 10-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 VF_A0813 4f542e26286d4d2694ec76763083dd99 282 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 11 276 1.8E-116 T 10-10-2018 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 VF_A0813 4f542e26286d4d2694ec76763083dd99 282 Pfam PF01226 Formate/nitrite transporter 11 273 9.5E-75 T 10-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 VF_A0008 4c7732efde98ee2061872464ce7c68b7 290 SUPERFAMILY SSF52151 3 213 6.02E-28 T 10-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VF_A0008 4c7732efde98ee2061872464ce7c68b7 290 Gene3D G3DSA:3.40.1090.10 99 194 1.4E-6 T 10-10-2018 VF_A0008 4c7732efde98ee2061872464ce7c68b7 290 Gene3D G3DSA:3.40.1090.10 1 98 5.0E-7 T 10-10-2018 VF_A0008 4c7732efde98ee2061872464ce7c68b7 290 Pfam PF01734 Patatin-like phospholipase 6 94 2.0E-6 T 10-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 VF_A0918 e1c34927e04d51f1e45ce12b767f90c5 236 SUPERFAMILY SSF63380 15 100 6.63E-14 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VF_A0918 e1c34927e04d51f1e45ce12b767f90c5 236 SUPERFAMILY SSF52343 103 234 1.57E-32 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_A0918 e1c34927e04d51f1e45ce12b767f90c5 236 Gene3D G3DSA:2.40.30.10 4 101 8.0E-17 T 10-10-2018 VF_A0918 e1c34927e04d51f1e45ce12b767f90c5 236 Gene3D G3DSA:3.40.50.80 102 236 5.3E-28 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_A0918 e1c34927e04d51f1e45ce12b767f90c5 236 Pfam PF00175 Oxidoreductase NAD-binding domain 111 214 9.7E-20 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VF_A0918 e1c34927e04d51f1e45ce12b767f90c5 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 135 144 2.8E-14 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_A0918 e1c34927e04d51f1e45ce12b767f90c5 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 47 54 2.8E-14 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_A0918 e1c34927e04d51f1e45ce12b767f90c5 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 94 103 2.8E-14 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_A0918 e1c34927e04d51f1e45ce12b767f90c5 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 200 208 2.8E-14 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_A0918 e1c34927e04d51f1e45ce12b767f90c5 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 110 129 2.8E-14 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_A0918 e1c34927e04d51f1e45ce12b767f90c5 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 32 44 2.8E-14 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_A0711 2eba435f990e0b7e36cb9bd2fc4f8108 261 PIRSF PIRSF029195 4 261 3.0E-88 T 10-10-2018 IPR016910 Uncharacterised conserved protein UCP029195, PTS-EIIA 2 VF_A0711 2eba435f990e0b7e36cb9bd2fc4f8108 261 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 128 254 2.1E-22 T 10-10-2018 IPR002178 PTS EIIA type-2 domain VF_A0711 2eba435f990e0b7e36cb9bd2fc4f8108 261 Gene3D G3DSA:3.40.930.10 123 254 6.1E-21 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0711 2eba435f990e0b7e36cb9bd2fc4f8108 261 SUPERFAMILY SSF55594 12 93 1.31E-13 T 10-10-2018 IPR035895 HPr-like superfamily VF_A0711 2eba435f990e0b7e36cb9bd2fc4f8108 261 Pfam PF00381 PTS HPr component phosphorylation site 16 88 9.6E-7 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like VF_A0711 2eba435f990e0b7e36cb9bd2fc4f8108 261 SUPERFAMILY SSF55804 128 253 2.09E-21 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0711 2eba435f990e0b7e36cb9bd2fc4f8108 261 Gene3D G3DSA:3.30.1340.10 9 93 5.1E-8 T 10-10-2018 IPR035895 HPr-like superfamily VF_1099 1186a1b23f1ae223e4b60a3d5d026b45 283 Gene3D G3DSA:3.40.710.10 20 282 6.6E-61 T 10-10-2018 VF_1099 1186a1b23f1ae223e4b60a3d5d026b45 283 Pfam PF13354 Beta-lactamase enzyme family 45 252 1.9E-29 T 10-10-2018 VF_1099 1186a1b23f1ae223e4b60a3d5d026b45 283 ProSitePatterns PS00146 Beta-lactamase class-A active site. 58 73 - T 10-10-2018 IPR023650 Beta-lactamase, class-A active site KEGG: 00311+3.5.2.6 VF_1099 1186a1b23f1ae223e4b60a3d5d026b45 283 SUPERFAMILY SSF56601 21 281 1.15E-66 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VF_1099 1186a1b23f1ae223e4b60a3d5d026b45 283 PRINTS PR00118 Beta-lactamase class A signature 56 73 6.9E-56 T 10-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 VF_1099 1186a1b23f1ae223e4b60a3d5d026b45 283 PRINTS PR00118 Beta-lactamase class A signature 134 158 6.9E-56 T 10-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 VF_1099 1186a1b23f1ae223e4b60a3d5d026b45 283 PRINTS PR00118 Beta-lactamase class A signature 25 49 6.9E-56 T 10-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 VF_1099 1186a1b23f1ae223e4b60a3d5d026b45 283 PRINTS PR00118 Beta-lactamase class A signature 160 185 6.9E-56 T 10-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 VF_1099 1186a1b23f1ae223e4b60a3d5d026b45 283 PRINTS PR00118 Beta-lactamase class A signature 98 123 6.9E-56 T 10-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 VF_1099 1186a1b23f1ae223e4b60a3d5d026b45 283 PRINTS PR00118 Beta-lactamase class A signature 196 211 6.9E-56 T 10-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 VF_1099 1186a1b23f1ae223e4b60a3d5d026b45 283 PRINTS PR00118 Beta-lactamase class A signature 213 228 6.9E-56 T 10-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 VF_1603 b9c0ab2e2641206680afa1a7056dcd99 400 Gene3D G3DSA:1.10.3210.10 195 362 1.0E-21 T 10-10-2018 VF_1603 b9c0ab2e2641206680afa1a7056dcd99 400 SMART SM00052 1 194 1.3E-4 T 10-10-2018 IPR001633 EAL domain VF_1603 b9c0ab2e2641206680afa1a7056dcd99 400 SUPERFAMILY SSF141868 4 195 2.22E-31 T 10-10-2018 IPR035919 EAL domain superfamily VF_1603 b9c0ab2e2641206680afa1a7056dcd99 400 PIRSF PIRSF003180 1 400 7.0E-158 T 10-10-2018 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing VF_1603 b9c0ab2e2641206680afa1a7056dcd99 400 SUPERFAMILY SSF109604 180 398 1.1E-41 T 10-10-2018 VF_1603 b9c0ab2e2641206680afa1a7056dcd99 400 Pfam PF08668 HDOD domain 204 317 1.4E-15 T 10-10-2018 IPR013976 Metal-dependent hydrolase HDOD VF_1603 b9c0ab2e2641206680afa1a7056dcd99 400 Gene3D G3DSA:3.20.20.450 3 194 1.0E-21 T 10-10-2018 IPR035919 EAL domain superfamily VF_1603 b9c0ab2e2641206680afa1a7056dcd99 400 Pfam PF00563 EAL domain 57 189 1.4E-16 T 10-10-2018 IPR001633 EAL domain VF_A0301 2749a056f125794f27e642003b1439df 579 Pfam PF02065 Melibiase 184 352 6.9E-18 T 10-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VF_A0301 2749a056f125794f27e642003b1439df 579 SUPERFAMILY SSF51445 193 532 7.79E-80 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_A0301 2749a056f125794f27e642003b1439df 579 Gene3D G3DSA:3.20.20.70 189 495 3.2E-93 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0825 dc2be6b28915c2b812ebc5dd61939f9d 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 281 - T 10-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VF_0825 dc2be6b28915c2b812ebc5dd61939f9d 388 Gene3D G3DSA:3.30.470.20 1 234 3.8E-92 T 10-10-2018 VF_0825 dc2be6b28915c2b812ebc5dd61939f9d 388 Pfam PF08442 ATP-grasp domain 2 203 1.9E-79 T 10-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VF_0825 dc2be6b28915c2b812ebc5dd61939f9d 388 Pfam PF00549 CoA-ligase 262 382 2.4E-24 T 10-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VF_0825 dc2be6b28915c2b812ebc5dd61939f9d 388 SUPERFAMILY SSF56059 1 238 1.02E-78 T 10-10-2018 VF_0825 dc2be6b28915c2b812ebc5dd61939f9d 388 PIRSF PIRSF001554 1 388 1.7E-152 T 10-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VF_0825 dc2be6b28915c2b812ebc5dd61939f9d 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 5.0E-171 T 10-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VF_0825 dc2be6b28915c2b812ebc5dd61939f9d 388 Gene3D G3DSA:3.30.1490.20 21 104 3.8E-92 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VF_0825 dc2be6b28915c2b812ebc5dd61939f9d 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 42.569 T 10-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VF_0825 dc2be6b28915c2b812ebc5dd61939f9d 388 SUPERFAMILY SSF52210 239 385 6.54E-52 T 10-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VF_0825 dc2be6b28915c2b812ebc5dd61939f9d 388 Gene3D G3DSA:3.40.50.261 240 388 7.7E-55 T 10-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VF_A0417 c0bb82c6abe605def700ffebe448ae1c 343 Gene3D G3DSA:3.90.180.10 22 330 4.1E-116 T 10-10-2018 VF_A0417 c0bb82c6abe605def700ffebe448ae1c 343 Pfam PF00107 Zinc-binding dehydrogenase 176 303 2.4E-27 T 10-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 VF_A0417 c0bb82c6abe605def700ffebe448ae1c 343 SUPERFAMILY SSF50129 3 175 4.41E-52 T 10-10-2018 IPR011032 GroES-like superfamily VF_A0417 c0bb82c6abe605def700ffebe448ae1c 343 SMART SM00829 14 340 8.1E-4 T 10-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VF_A0417 c0bb82c6abe605def700ffebe448ae1c 343 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 10-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 VF_A0417 c0bb82c6abe605def700ffebe448ae1c 343 Gene3D G3DSA:3.40.50.720 155 288 4.1E-116 T 10-10-2018 VF_A0417 c0bb82c6abe605def700ffebe448ae1c 343 SUPERFAMILY SSF51735 143 307 2.18E-36 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0417 c0bb82c6abe605def700ffebe448ae1c 343 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 5 342 6.7E-178 T 10-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 VF_A0417 c0bb82c6abe605def700ffebe448ae1c 343 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 136 2.3E-31 T 10-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VF_A0417 c0bb82c6abe605def700ffebe448ae1c 343 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 3 342 60.144 T 10-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 VF_2119 44d1895d04facd26948f6f9eac3d92ae 158 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 153 3.7E-64 T 10-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 VF_2119 44d1895d04facd26948f6f9eac3d92ae 158 SUPERFAMILY SSF89562 5 154 2.09E-45 T 10-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily VF_2119 44d1895d04facd26948f6f9eac3d92ae 158 Gene3D G3DSA:3.50.30.40 1 158 5.3E-58 T 10-10-2018 VF_2119 44d1895d04facd26948f6f9eac3d92ae 158 Pfam PF03737 Aldolase/RraA 5 151 5.4E-41 T 10-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 8.1E-61 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 8.1E-61 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 8.1E-61 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 8.1E-61 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 8.1E-61 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 632 645 8.1E-61 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 8.1E-61 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 Pfam PF01578 Cytochrome C assembly protein 89 297 5.6E-54 T 10-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 4.2E-95 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 4.2E-95 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 4.2E-95 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 4.2E-95 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 4.2E-95 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 4.2E-95 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 4.2E-95 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 4.2E-95 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 642 1.2E-257 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1819 4f80b7a22662164ae93a685048d018c9 652 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 639 5.0E-127 T 10-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal VF_A0418 bc6b7cfffd623673f49504a2f7c0ea6e 398 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 2 395 53.277 T 10-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 VF_A0418 bc6b7cfffd623673f49504a2f7c0ea6e 398 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 5 397 2.0E-207 T 10-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 VF_A0418 bc6b7cfffd623673f49504a2f7c0ea6e 398 Gene3D G3DSA:3.90.1150.10 39 387 5.1E-134 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_A0418 bc6b7cfffd623673f49504a2f7c0ea6e 398 Gene3D G3DSA:3.40.640.10 58 296 5.1E-134 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_A0418 bc6b7cfffd623673f49504a2f7c0ea6e 398 Pfam PF00155 Aminotransferase class I and II 43 387 1.1E-71 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VF_A0418 bc6b7cfffd623673f49504a2f7c0ea6e 398 SUPERFAMILY SSF53383 5 396 2.29E-119 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_A0418 bc6b7cfffd623673f49504a2f7c0ea6e 398 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 10-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 VF_A0660 90a9adb604aed832102617d421d1c3e8 132 Gene3D G3DSA:3.10.180.10 2 130 2.1E-41 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_A0660 90a9adb604aed832102617d421d1c3e8 132 SUPERFAMILY SSF54593 9 127 3.26E-14 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_2144 de9a2e96e96e384a960d472166782d3e 572 SUPERFAMILY SSF48208 81 566 1.25E-86 T 10-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 VF_2144 de9a2e96e96e384a960d472166782d3e 572 Pfam PF00759 Glycosyl hydrolase family 9 100 504 9.0E-23 T 10-10-2018 IPR001701 Glycoside hydrolase family 9 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VF_2144 de9a2e96e96e384a960d472166782d3e 572 Pfam PF02927 Cellulase N-terminal ig-like domain 5 83 1.9E-8 T 10-10-2018 IPR004197 Cellulase, Ig-like domain GO:0005975|GO:0008810 VF_2144 de9a2e96e96e384a960d472166782d3e 572 SUPERFAMILY SSF81296 2 90 5.81E-9 T 10-10-2018 IPR014756 Immunoglobulin E-set VF_2144 de9a2e96e96e384a960d472166782d3e 572 Gene3D G3DSA:1.50.10.10 94 571 4.0E-223 T 10-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 VF_2144 de9a2e96e96e384a960d472166782d3e 572 Gene3D G3DSA:2.60.40.10 1 92 1.7E-19 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_0614 16b29bcb2896b81a793091dd85bd985e 267 Gene3D G3DSA:3.30.540.10 1 140 1.9E-47 T 10-10-2018 VF_0614 16b29bcb2896b81a793091dd85bd985e 267 Gene3D G3DSA:3.40.190.80 143 267 2.1E-32 T 10-10-2018 VF_0614 16b29bcb2896b81a793091dd85bd985e 267 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 10-10-2018 IPR020583 Inositol monophosphatase, metal-binding site VF_0614 16b29bcb2896b81a793091dd85bd985e 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 9.7E-47 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VF_0614 16b29bcb2896b81a793091dd85bd985e 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 9.7E-47 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VF_0614 16b29bcb2896b81a793091dd85bd985e 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 9.7E-47 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VF_0614 16b29bcb2896b81a793091dd85bd985e 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 9.7E-47 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VF_0614 16b29bcb2896b81a793091dd85bd985e 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 9.7E-47 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VF_0614 16b29bcb2896b81a793091dd85bd985e 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 9.7E-47 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VF_0614 16b29bcb2896b81a793091dd85bd985e 267 Pfam PF00459 Inositol monophosphatase family 2 258 1.5E-59 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VF_0614 16b29bcb2896b81a793091dd85bd985e 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 6.8E-29 T 10-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 VF_0614 16b29bcb2896b81a793091dd85bd985e 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 6.8E-29 T 10-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 VF_0614 16b29bcb2896b81a793091dd85bd985e 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 6.8E-29 T 10-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 VF_0614 16b29bcb2896b81a793091dd85bd985e 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 6.8E-29 T 10-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 VF_0614 16b29bcb2896b81a793091dd85bd985e 267 SUPERFAMILY SSF56655 1 259 2.09E-76 T 10-10-2018 VF_0609 efdce14af28b11ac263760b91bcf15d6 425 Gene3D G3DSA:2.40.170.10 49 425 2.6E-70 T 10-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 VF_0609 efdce14af28b11ac263760b91bcf15d6 425 Pfam PF02264 LamB porin 51 425 9.9E-79 T 10-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VF_0609 efdce14af28b11ac263760b91bcf15d6 425 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 81 401 4.0E-50 T 10-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VF_0609 efdce14af28b11ac263760b91bcf15d6 425 SUPERFAMILY SSF56935 50 425 7.33E-95 T 10-10-2018 VF_A0973 f3fd654faf11d06d4b6b5062c137c816 305 Gene3D G3DSA:3.40.50.1980 20 304 1.7E-39 T 10-10-2018 VF_A0973 f3fd654faf11d06d4b6b5062c137c816 305 Pfam PF01497 Periplasmic binding protein 96 280 1.8E-23 T 10-10-2018 IPR002491 ABC transporter periplasmic binding domain VF_A0973 f3fd654faf11d06d4b6b5062c137c816 305 SUPERFAMILY SSF53807 30 296 2.08E-36 T 10-10-2018 VF_1138 1333f4f84529b9639fb0062690c6392c 620 Gene3D G3DSA:3.30.450.20 82 175 1.2E-7 T 10-10-2018 VF_1138 1333f4f84529b9639fb0062690c6392c 620 SUPERFAMILY SSF58104 319 619 5.76E-64 T 10-10-2018 VF_1138 1333f4f84529b9639fb0062690c6392c 620 SMART SM00283 357 618 3.1E-65 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1138 1333f4f84529b9639fb0062690c6392c 620 Gene3D G3DSA:1.10.287.950 291 620 1.0E-58 T 10-10-2018 VF_1138 1333f4f84529b9639fb0062690c6392c 620 Pfam PF02743 Cache domain 51 224 2.0E-15 T 10-10-2018 IPR033479 Double Cache domain 1 VF_1138 1333f4f84529b9639fb0062690c6392c 620 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 423 585 1.3E-38 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0385 8c02fef83cf3e255184e0591ae421115 178 SUPERFAMILY SSF55729 6 168 8.51E-39 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A0385 8c02fef83cf3e255184e0591ae421115 178 Pfam PF13302 Acetyltransferase (GNAT) domain 9 144 5.5E-19 T 10-10-2018 IPR000182 GNAT domain VF_A0385 8c02fef83cf3e255184e0591ae421115 178 Gene3D G3DSA:3.40.630.30 8 176 7.6E-49 T 10-10-2018 VF_A0610 240c6507424ed5f5c9425c1f92f586bc 183 Pfam PF11810 Domain of unknown function (DUF3332) 6 178 1.5E-44 T 10-10-2018 IPR021768 Protein of unknown function DUF3332 VF_A0708 7176df273b7d6288b6944bd6ad3b913f 285 Gene3D G3DSA:1.10.10.60 231 284 1.7E-17 T 10-10-2018 VF_A0708 7176df273b7d6288b6944bd6ad3b913f 285 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 234 276 - T 10-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VF_A0708 7176df273b7d6288b6944bd6ad3b913f 285 SUPERFAMILY SSF51182 41 223 4.73E-5 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_A0708 7176df273b7d6288b6944bd6ad3b913f 285 Gene3D G3DSA:1.10.10.60 179 230 5.1E-13 T 10-10-2018 VF_A0708 7176df273b7d6288b6944bd6ad3b913f 285 SUPERFAMILY SSF46689 183 230 4.48E-7 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0708 7176df273b7d6288b6944bd6ad3b913f 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 264 280 7.7E-6 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_A0708 7176df273b7d6288b6944bd6ad3b913f 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 249 264 7.7E-6 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_A0708 7176df273b7d6288b6944bd6ad3b913f 285 SUPERFAMILY SSF46689 233 281 1.56E-12 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0708 7176df273b7d6288b6944bd6ad3b913f 285 Pfam PF12833 Helix-turn-helix domain 203 281 5.5E-21 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0708 7176df273b7d6288b6944bd6ad3b913f 285 SMART SM00342 197 280 7.2E-30 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0993 6de78a52de9d5f0e95734742d1b75644 410 Pfam PF04055 Radical SAM superfamily 20 188 2.6E-12 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_A0993 6de78a52de9d5f0e95734742d1b75644 410 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 11 389 2.1E-159 T 10-10-2018 VF_A0993 6de78a52de9d5f0e95734742d1b75644 410 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 281 370 5.0E-19 T 10-10-2018 IPR023885 4Fe4S-binding SPASM domain VF_A0993 6de78a52de9d5f0e95734742d1b75644 410 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 173 409 7.0E-17 T 10-10-2018 VF_A0993 6de78a52de9d5f0e95734742d1b75644 410 Pfam PF13186 Iron-sulfur cluster-binding domain 282 342 1.4E-8 T 10-10-2018 IPR023885 4Fe4S-binding SPASM domain VF_A0993 6de78a52de9d5f0e95734742d1b75644 410 Gene3D G3DSA:3.20.20.70 8 392 2.5E-110 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A0993 6de78a52de9d5f0e95734742d1b75644 410 SUPERFAMILY SSF102114 17 351 1.57E-36 T 10-10-2018 VF_A0728 4f49d0e5d23923744074b271dd881def 92 Gene3D G3DSA:3.40.630.30 1 92 2.4E-21 T 10-10-2018 VF_A0728 4f49d0e5d23923744074b271dd881def 92 Pfam PF14542 GCN5-related N-acetyl-transferase 15 89 1.3E-20 T 10-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase VF_A0728 4f49d0e5d23923744074b271dd881def 92 SUPERFAMILY SSF55729 1 91 2.57E-23 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_0822 1ee890a03c811197ab78cd7bd484e14b 237 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 110 7.8E-31 T 10-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0822 1ee890a03c811197ab78cd7bd484e14b 237 SUPERFAMILY SSF54292 1 105 2.34E-30 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VF_0822 1ee890a03c811197ab78cd7bd484e14b 237 SUPERFAMILY SSF46548 107 234 1.92E-39 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_0822 1ee890a03c811197ab78cd7bd484e14b 237 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 148 159 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_0822 1ee890a03c811197ab78cd7bd484e14b 237 Gene3D G3DSA:3.10.20.30 1 105 6.8E-34 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_0822 1ee890a03c811197ab78cd7bd484e14b 237 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 229 7.0E-88 T 10-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0822 1ee890a03c811197ab78cd7bd484e14b 237 Pfam PF13534 4Fe-4S dicluster domain 147 220 1.6E-10 T 10-10-2018 VF_0822 1ee890a03c811197ab78cd7bd484e14b 237 Gene3D G3DSA:1.10.1060.10 106 237 2.3E-57 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_1812 7971f7e90661b241e36bed82c3c27119 408 Gene3D G3DSA:2.40.160.60 26 408 3.0E-112 T 10-10-2018 VF_1812 7971f7e90661b241e36bed82c3c27119 408 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 17 408 1.0E-108 T 10-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VF_1812 7971f7e90661b241e36bed82c3c27119 408 SUPERFAMILY SSF56935 26 408 6.41E-93 T 10-10-2018 VF_A0910 85c3d5b797b4a67eb33503cb14f4a02e 185 Pfam PF02525 Flavodoxin-like fold 2 156 2.5E-37 T 10-10-2018 IPR003680 Flavodoxin-like fold VF_A0910 85c3d5b797b4a67eb33503cb14f4a02e 185 Gene3D G3DSA:3.40.50.360 1 177 3.4E-47 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_A0910 85c3d5b797b4a67eb33503cb14f4a02e 185 SUPERFAMILY SSF52218 1 161 2.19E-39 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_A0248 9d6ee92e679559e3c458897c0393d10f 423 Gene3D G3DSA:1.10.1060.10 23 110 2.5E-7 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_A0248 9d6ee92e679559e3c458897c0393d10f 423 Pfam PF13183 4Fe-4S dicluster domain 30 94 1.2E-7 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_A0248 9d6ee92e679559e3c458897c0393d10f 423 SUPERFAMILY SSF46548 28 107 3.14E-16 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VF_A0248 9d6ee92e679559e3c458897c0393d10f 423 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 80 91 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_A0248 9d6ee92e679559e3c458897c0393d10f 423 Pfam PF02754 Cysteine-rich domain 321 403 3.2E-11 T 10-10-2018 IPR004017 Cysteine-rich domain VF_A0248 9d6ee92e679559e3c458897c0393d10f 423 Pfam PF02754 Cysteine-rich domain 190 276 2.2E-14 T 10-10-2018 IPR004017 Cysteine-rich domain VF_A0248 9d6ee92e679559e3c458897c0393d10f 423 TIGRFAM TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit 27 422 2.6E-218 T 10-10-2018 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit GO:0009061|GO:0016020 VF_A1087 f9db0418c1f1a98a4d3371975ffab37f 350 Pfam PF13343 Bacterial extracellular solute-binding protein 87 306 1.8E-34 T 10-10-2018 VF_A1087 f9db0418c1f1a98a4d3371975ffab37f 350 Gene3D G3DSA:3.40.190.10 60 313 2.6E-37 T 10-10-2018 VF_A1087 f9db0418c1f1a98a4d3371975ffab37f 350 SUPERFAMILY SSF53850 35 343 7.41E-46 T 10-10-2018 VF_A1087 f9db0418c1f1a98a4d3371975ffab37f 350 Gene3D G3DSA:3.40.190.10 136 314 2.6E-37 T 10-10-2018 VF_1351 8a829a05eeabe2972641c0f4e8119a81 147 Pfam PF06249 Ethanolamine utilisation protein EutQ 16 135 1.0E-4 T 10-10-2018 IPR010424 Ethanolamine utilisation EutQ VF_1351 8a829a05eeabe2972641c0f4e8119a81 147 Gene3D G3DSA:2.60.120.10 11 138 3.7E-18 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_1351 8a829a05eeabe2972641c0f4e8119a81 147 SUPERFAMILY SSF51182 19 134 3.14E-13 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_2247 4432c9b31f783b9170a5ee4c660c13e5 117 Pfam PF02152 Dihydroneopterin aldolase 4 113 8.4E-33 T 10-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 VF_2247 4432c9b31f783b9170a5ee4c660c13e5 117 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 4 114 3.7E-30 T 10-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 VF_2247 4432c9b31f783b9170a5ee4c660c13e5 117 SMART SM00905 4 114 1.6E-48 T 10-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 VF_2247 4432c9b31f783b9170a5ee4c660c13e5 117 TIGRFAM TIGR00526 folB_dom: FolB domain 1 116 4.3E-38 T 10-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 VF_2247 4432c9b31f783b9170a5ee4c660c13e5 117 Gene3D G3DSA:3.30.1130.10 1 116 2.4E-43 T 10-10-2018 VF_2247 4432c9b31f783b9170a5ee4c660c13e5 117 SUPERFAMILY SSF55620 1 114 1.06E-37 T 10-10-2018 VF_A0143 cb6059ef33f350ca8a2aad95a427a6e5 492 Gene3D G3DSA:2.70.50.50 24 205 5.4E-77 T 10-10-2018 VF_A0143 cb6059ef33f350ca8a2aad95a427a6e5 492 Hamap MF_01905 GlcNAc-binding protein A [gbpA]. 3 491 60.559 T 10-10-2018 IPR020879 N-acetylglucosamine-binding protein A GO:0008061 VF_A0143 cb6059ef33f350ca8a2aad95a427a6e5 492 Gene3D G3DSA:3.30.70.2150 213 321 1.0E-38 T 10-10-2018 VF_A0143 cb6059ef33f350ca8a2aad95a427a6e5 492 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 24 202 6.8E-34 T 10-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal VF_A0143 cb6059ef33f350ca8a2aad95a427a6e5 492 SUPERFAMILY SSF81296 24 206 5.32E-53 T 10-10-2018 IPR014756 Immunoglobulin E-set VF_A0143 cb6059ef33f350ca8a2aad95a427a6e5 492 Gene3D G3DSA:2.60.40.2550 322 419 3.1E-36 T 10-10-2018 VF_2444 821ba5a7a47bc61737e81dfebcc210af 285 Gene3D G3DSA:1.20.120.1780 168 285 4.4E-11 T 10-10-2018 VF_2444 821ba5a7a47bc61737e81dfebcc210af 285 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 8 283 3.0E-105 T 10-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 VF_2444 821ba5a7a47bc61737e81dfebcc210af 285 Pfam PF01040 UbiA prenyltransferase family 24 266 3.4E-67 T 10-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 VF_2444 821ba5a7a47bc61737e81dfebcc210af 285 Gene3D G3DSA:1.10.357.140 19 167 6.1E-43 T 10-10-2018 VF_2444 821ba5a7a47bc61737e81dfebcc210af 285 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 1 284 29.688 T 10-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 VF_1823 1b1fd8a804b40b477c0ee9fec1f08a61 222 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 8 218 4.6E-92 T 10-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria VF_1823 1b1fd8a804b40b477c0ee9fec1f08a61 222 Pfam PF03379 CcmB protein 5 219 1.3E-90 T 10-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1823 1b1fd8a804b40b477c0ee9fec1f08a61 222 PIRSF PIRSF002764 1 222 2.3E-83 T 10-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria VF_1823 1b1fd8a804b40b477c0ee9fec1f08a61 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 103 121 1.9E-70 T 10-10-2018 VF_1823 1b1fd8a804b40b477c0ee9fec1f08a61 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 29 50 1.9E-70 T 10-10-2018 VF_1823 1b1fd8a804b40b477c0ee9fec1f08a61 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 55 72 1.9E-70 T 10-10-2018 VF_1823 1b1fd8a804b40b477c0ee9fec1f08a61 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 195 218 1.9E-70 T 10-10-2018 VF_1823 1b1fd8a804b40b477c0ee9fec1f08a61 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 158 177 1.9E-70 T 10-10-2018 VF_1823 1b1fd8a804b40b477c0ee9fec1f08a61 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 78 101 1.9E-70 T 10-10-2018 VF_2307 e5101a17f8f8ca3b4a3949ce18b8632b 378 Gene3D G3DSA:3.30.70.360 177 292 4.3E-79 T 10-10-2018 VF_2307 e5101a17f8f8ca3b4a3949ce18b8632b 378 Pfam PF07687 Peptidase dimerisation domain 174 285 6.0E-25 T 10-10-2018 IPR011650 Peptidase M20, dimerisation domain VF_2307 e5101a17f8f8ca3b4a3949ce18b8632b 378 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 9 372 5.6E-126 T 10-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 VF_2307 e5101a17f8f8ca3b4a3949ce18b8632b 378 SUPERFAMILY SSF55031 180 293 1.64E-22 T 10-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VF_2307 e5101a17f8f8ca3b4a3949ce18b8632b 378 SUPERFAMILY SSF53187 3 376 1.14E-55 T 10-10-2018 VF_2307 e5101a17f8f8ca3b4a3949ce18b8632b 378 Gene3D G3DSA:3.40.630.10 22 360 4.3E-79 T 10-10-2018 VF_2307 e5101a17f8f8ca3b4a3949ce18b8632b 378 Pfam PF01546 Peptidase family M20/M25/M40 72 374 2.3E-32 T 10-10-2018 IPR002933 Peptidase M20 GO:0016787 VF_2307 e5101a17f8f8ca3b4a3949ce18b8632b 378 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 71 80 - T 10-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VF_2307 e5101a17f8f8ca3b4a3949ce18b8632b 378 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 106 143 - T 10-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VF_2307 e5101a17f8f8ca3b4a3949ce18b8632b 378 Hamap MF_01108 Acetylornithine deacetylase [argE]. 1 378 61.379 T 10-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 VF_A0361 ccba6678e77ca76d4b9bdaac89abfb03 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 4.3E-7 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_A0361 ccba6678e77ca76d4b9bdaac89abfb03 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 4.3E-7 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_A0361 ccba6678e77ca76d4b9bdaac89abfb03 332 Pfam PF13377 Periplasmic binding protein-like domain 168 329 1.9E-35 T 10-10-2018 VF_A0361 ccba6678e77ca76d4b9bdaac89abfb03 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 10-10-2018 VF_A0361 ccba6678e77ca76d4b9bdaac89abfb03 332 SUPERFAMILY SSF47413 1 60 4.31E-16 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_A0361 ccba6678e77ca76d4b9bdaac89abfb03 332 Gene3D G3DSA:1.10.260.40 1 59 4.9E-21 T 10-10-2018 VF_A0361 ccba6678e77ca76d4b9bdaac89abfb03 332 SUPERFAMILY SSF53822 61 330 1.85E-79 T 10-10-2018 IPR028082 Periplasmic binding protein-like I VF_A0361 ccba6678e77ca76d4b9bdaac89abfb03 332 Gene3D G3DSA:3.40.50.2300 159 289 7.8E-71 T 10-10-2018 VF_A0361 ccba6678e77ca76d4b9bdaac89abfb03 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 6.5E-17 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_A0361 ccba6678e77ca76d4b9bdaac89abfb03 332 SMART SM00354 1 71 9.0E-33 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_A0361 ccba6678e77ca76d4b9bdaac89abfb03 332 Gene3D G3DSA:3.40.50.2300 62 300 7.8E-71 T 10-10-2018 VF_0069 3e1a0eb06cc2cf69ede5829c1cacbaad 371 SUPERFAMILY SSF103481 283 359 1.16E-5 T 10-10-2018 VF_0069 3e1a0eb06cc2cf69ede5829c1cacbaad 371 TIGRFAM TIGR00688 rarD: protein RarD 83 335 3.6E-90 T 10-10-2018 IPR004626 RarD protein GO:0005887 VF_0069 3e1a0eb06cc2cf69ede5829c1cacbaad 371 SUPERFAMILY SSF103481 117 218 7.19E-12 T 10-10-2018 VF_0069 3e1a0eb06cc2cf69ede5829c1cacbaad 371 Pfam PF00892 EamA-like transporter family 84 217 6.1E-14 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_2487 5d05418aa6302d61c7aba383cc0c1d54 680 Pfam PF01432 Peptidase family M3 222 677 1.3E-163 T 10-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 VF_2487 5d05418aa6302d61c7aba383cc0c1d54 680 SUPERFAMILY SSF55486 1 677 2.32E-210 T 10-10-2018 VF_2487 5d05418aa6302d61c7aba383cc0c1d54 680 Gene3D G3DSA:1.10.1370.40 13 675 2.8E-267 T 10-10-2018 VF_2487 5d05418aa6302d61c7aba383cc0c1d54 680 Gene3D G3DSA:1.10.1370.10 140 610 2.8E-267 T 10-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 VF_A0820 85bd736cda7539905c76084135b6c149 181 Pfam PF04542 Sigma-70 region 2 8 74 2.4E-14 T 10-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VF_A0820 85bd736cda7539905c76084135b6c149 181 TIGRFAM TIGR02959 SigZ: RNA polymerase sigma factor, SigZ family 7 174 6.4E-63 T 10-10-2018 IPR014304 RNA polymerase sigma-Z type VF_A0820 85bd736cda7539905c76084135b6c149 181 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 151 7.7E-21 T 10-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VF_A0820 85bd736cda7539905c76084135b6c149 181 SUPERFAMILY SSF88659 91 154 9.38E-8 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_A0820 85bd736cda7539905c76084135b6c149 181 Pfam PF08281 Sigma-70, region 4 100 150 2.2E-7 T 10-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VF_A0820 85bd736cda7539905c76084135b6c149 181 SUPERFAMILY SSF88946 4 87 1.77E-17 T 10-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VF_A0820 85bd736cda7539905c76084135b6c149 181 Gene3D G3DSA:1.10.1740.10 2 94 1.7E-16 T 10-10-2018 VF_A0820 85bd736cda7539905c76084135b6c149 181 Gene3D G3DSA:1.10.10.10 95 156 2.4E-6 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0465 6aeb48b70fe7b7258146e236fd479886 449 SUPERFAMILY SSF55073 311 415 8.63E-5 T 10-10-2018 IPR029787 Nucleotide cyclase VF_2278 4e087ad07f642fe2f199a16df8765855 444 SMART SM00382 49 333 1.1E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2278 4e087ad07f642fe2f199a16df8765855 444 SUPERFAMILY SSF52540 3 442 3.33E-92 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2278 4e087ad07f642fe2f199a16df8765855 444 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 444 42.505 T 10-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 VF_2278 4e087ad07f642fe2f199a16df8765855 444 SMART SM01086 336 435 3.5E-24 T 10-10-2018 IPR019489 Clp ATPase, C-terminal VF_2278 4e087ad07f642fe2f199a16df8765855 444 Pfam PF07724 AAA domain (Cdc48 subfamily) 172 330 3.8E-40 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VF_2278 4e087ad07f642fe2f199a16df8765855 444 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 100 8.7E-7 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VF_2278 4e087ad07f642fe2f199a16df8765855 444 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 444 3.7E-215 T 10-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 VF_2278 4e087ad07f642fe2f199a16df8765855 444 Gene3D G3DSA:1.10.8.60 336 441 3.7E-40 T 10-10-2018 VF_2278 4e087ad07f642fe2f199a16df8765855 444 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 336 406 1.1E-5 T 10-10-2018 IPR019489 Clp ATPase, C-terminal VF_B0018 3733ef61464c8448a78ab19443e463e3 203 SUPERFAMILY SSF47413 2 68 6.7E-17 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_B0018 3733ef61464c8448a78ab19443e463e3 203 Pfam PF00717 Peptidase S24-like 120 183 1.3E-5 T 10-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C VF_B0018 3733ef61464c8448a78ab19443e463e3 203 SMART SM00530 7 62 4.7E-16 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_B0018 3733ef61464c8448a78ab19443e463e3 203 Gene3D G3DSA:2.10.109.10 82 200 1.9E-12 T 10-10-2018 VF_B0018 3733ef61464c8448a78ab19443e463e3 203 SUPERFAMILY SSF51306 72 198 5.76E-24 T 10-10-2018 IPR036286 LexA/Signal peptidase-like superfamily VF_B0018 3733ef61464c8448a78ab19443e463e3 203 Gene3D G3DSA:1.10.260.40 1 66 1.2E-21 T 10-10-2018 VF_B0018 3733ef61464c8448a78ab19443e463e3 203 Pfam PF01381 Helix-turn-helix 8 62 1.1E-16 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_A0605 c026ffa61bb9c05108d2e61324c77b0c 139 Pfam PF04519 Polymer-forming cytoskeletal 14 108 3.1E-20 T 10-10-2018 IPR007607 Bactofilin A/B VF_2183 c92deb99cc35a7867232d8c9a4a31c11 183 SUPERFAMILY SSF55846 6 181 8.77E-62 T 10-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 VF_2183 c92deb99cc35a7867232d8c9a4a31c11 183 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 30 170 3.7E-26 T 10-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 VF_2183 c92deb99cc35a7867232d8c9a4a31c11 183 Gene3D G3DSA:3.40.80.10 5 183 4.7E-54 T 10-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 VF_2183 c92deb99cc35a7867232d8c9a4a31c11 183 SMART SM00644 19 170 6.4E-48 T 10-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 VF_0517 f09aa55c8446d1f7f2e3073cfdf9731d 305 Pfam PF00482 Type II secretion system (T2SS), protein F 138 262 6.5E-17 T 10-10-2018 IPR018076 Type II secretion system F domain VF_A0094 f7f81cc454c5226018552ab6c35a2a41 202 Gene3D G3DSA:1.20.120.1760 4 199 2.4E-19 T 10-10-2018 VF_A0094 f7f81cc454c5226018552ab6c35a2a41 202 Pfam PF01066 CDP-alcohol phosphatidyltransferase 27 89 4.9E-10 T 10-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 VF_A0094 f7f81cc454c5226018552ab6c35a2a41 202 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 68 89 - T 10-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 VF_A0620 4e18461182b12df07c4423d957d8c4fc 75 Gene3D G3DSA:1.20.1280.100 1 71 3.2E-30 T 10-10-2018 VF_A0620 4e18461182b12df07c4423d957d8c4fc 75 Pfam PF09016 Pas factor saposin fold 3 75 5.5E-39 T 10-10-2018 IPR015106 Pas factor saposin domain VF_1028 4ced6dc3bd176cd9fa2156366d1673d1 396 Gene3D G3DSA:3.40.50.1100 9 204 1.5E-183 T 10-10-2018 VF_1028 4ced6dc3bd176cd9fa2156366d1673d1 396 SUPERFAMILY SSF53686 5 389 1.44E-142 T 10-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VF_1028 4ced6dc3bd176cd9fa2156366d1673d1 396 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 390 49.838 T 10-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VF_1028 4ced6dc3bd176cd9fa2156366d1673d1 396 PIRSF PIRSF001413 1 396 2.2E-170 T 10-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VF_1028 4ced6dc3bd176cd9fa2156366d1673d1 396 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 79 93 - T 10-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VF_1028 4ced6dc3bd176cd9fa2156366d1673d1 396 Gene3D G3DSA:3.40.50.1100 53 383 1.5E-183 T 10-10-2018 VF_1028 4ced6dc3bd176cd9fa2156366d1673d1 396 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 6 388 2.6E-194 T 10-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VF_1028 4ced6dc3bd176cd9fa2156366d1673d1 396 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 51 377 1.2E-49 T 10-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VF_0389 776c5dd8a9496ca07eb947f6b39faab9 165 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 20 160 5.5E-49 T 10-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 VF_0389 776c5dd8a9496ca07eb947f6b39faab9 165 Pfam PF03968 OstA-like protein 30 142 3.8E-32 T 10-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal VF_0389 776c5dd8a9496ca07eb947f6b39faab9 165 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 1 160 25.172 T 10-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 VF_0389 776c5dd8a9496ca07eb947f6b39faab9 165 Gene3D G3DSA:2.60.450.10 20 157 2.0E-45 T 10-10-2018 VF_A0051 e0c3dc9c398b0f175e02a83c09b624e5 138 Gene3D G3DSA:1.10.720.30 20 79 1.4E-26 T 10-10-2018 IPR036361 SAP domain superfamily VF_A0051 e0c3dc9c398b0f175e02a83c09b624e5 138 Pfam PF09905 DNA-binding protein VF530 12 74 1.2E-31 T 10-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 VF_1150 be5585d7b3830e727b39b12b2191067c 195 Pfam PF01184 GPR1/FUN34/yaaH family 2 183 1.3E-38 T 10-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 VF_1150 be5585d7b3830e727b39b12b2191067c 195 ProSitePatterns PS01114 GPR1/FUN34/yaaH family signature. 7 16 - T 10-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 VF_0032 fb0ccfa7ca968553c71682eb54f26805 644 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 144 597 99.15 T 10-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VF_0032 fb0ccfa7ca968553c71682eb54f26805 644 Pfam PF13667 ThiC-associated domain 23 105 2.4E-35 T 10-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VF_0032 fb0ccfa7ca968553c71682eb54f26805 644 Pfam PF01964 Radical SAM ThiC family 145 593 5.3E-198 T 10-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VF_0032 fb0ccfa7ca968553c71682eb54f26805 644 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 144 595 1.1E-218 T 10-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VF_0032 fb0ccfa7ca968553c71682eb54f26805 644 Gene3D G3DSA:3.20.20.540 215 528 3.0E-153 T 10-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VF_2321 a22f3ccd0d294011f4a89d30e884b06d 401 Pfam PF01145 SPFH domain / Band 7 family 93 264 1.2E-30 T 10-10-2018 IPR001107 Band 7 domain VF_2321 a22f3ccd0d294011f4a89d30e884b06d 401 SUPERFAMILY SSF117892 122 254 4.32E-23 T 10-10-2018 IPR036013 Band 7/SPFH domain superfamily VF_2321 a22f3ccd0d294011f4a89d30e884b06d 401 Gene3D G3DSA:3.30.479.30 118 251 6.1E-22 T 10-10-2018 VF_2321 a22f3ccd0d294011f4a89d30e884b06d 401 TIGRFAM TIGR01933 hflK: HflK protein 91 351 4.9E-120 T 10-10-2018 IPR010201 HflK GO:0016021 VF_2321 a22f3ccd0d294011f4a89d30e884b06d 401 SMART SM00244 89 249 4.4E-45 T 10-10-2018 IPR001107 Band 7 domain VF_2321 a22f3ccd0d294011f4a89d30e884b06d 401 PRINTS PR00721 Stomatin signature 143 164 2.3E-6 T 10-10-2018 IPR001972 Stomatin family GO:0016020 VF_2321 a22f3ccd0d294011f4a89d30e884b06d 401 PRINTS PR00721 Stomatin signature 178 195 2.3E-6 T 10-10-2018 IPR001972 Stomatin family GO:0016020 VF_2321 a22f3ccd0d294011f4a89d30e884b06d 401 PRINTS PR00721 Stomatin signature 96 118 2.3E-6 T 10-10-2018 IPR001972 Stomatin family GO:0016020 VF_2321 a22f3ccd0d294011f4a89d30e884b06d 401 Pfam PF12221 Bacterial membrane protein N terminal 1 52 2.0E-15 T 10-10-2018 IPR020980 Menbrane protein HflK, N-terminal VF_0859 d37814c1e0983b9e4945738ee0c7de3a 241 Gene3D G3DSA:3.40.50.720 3 241 6.0E-73 T 10-10-2018 VF_0859 d37814c1e0983b9e4945738ee0c7de3a 241 SUPERFAMILY SSF51735 3 240 7.78E-73 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0859 d37814c1e0983b9e4945738ee0c7de3a 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 2.0E-9 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0859 d37814c1e0983b9e4945738ee0c7de3a 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.0E-9 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0859 d37814c1e0983b9e4945738ee0c7de3a 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 2.0E-9 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0859 d37814c1e0983b9e4945738ee0c7de3a 241 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 194 0.0025 T 10-10-2018 VF_0859 d37814c1e0983b9e4945738ee0c7de3a 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.7E-42 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0859 d37814c1e0983b9e4945738ee0c7de3a 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.7E-42 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0859 d37814c1e0983b9e4945738ee0c7de3a 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.7E-42 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0859 d37814c1e0983b9e4945738ee0c7de3a 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 204 224 1.7E-42 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0859 d37814c1e0983b9e4945738ee0c7de3a 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.7E-42 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0859 d37814c1e0983b9e4945738ee0c7de3a 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.7E-42 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0859 d37814c1e0983b9e4945738ee0c7de3a 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 240 1.1E-57 T 10-10-2018 VF_0859 d37814c1e0983b9e4945738ee0c7de3a 241 TIGRFAM TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase 5 241 3.1E-127 T 10-10-2018 IPR011285 3-oxoacyl-(acyl-carrier-protein) reductase, putative KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VF_0273 2eab8d21fb13d9098ad6767f85d04027 859 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 135 667 5.0E-77 T 10-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit VF_0273 2eab8d21fb13d9098ad6767f85d04027 859 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 32 723 1.6E-215 T 10-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ VF_0273 2eab8d21fb13d9098ad6767f85d04027 859 Pfam PF11874 Domain of unknown function (DUF3394) 674 853 8.3E-69 T 10-10-2018 IPR021814 Protein of unknown function DUF3394 VF_0211 bed8553398d5da59ad2498643510238e 165 Gene3D G3DSA:3.50.30.40 1 160 5.4E-60 T 10-10-2018 VF_0211 bed8553398d5da59ad2498643510238e 165 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 159 4.0E-78 T 10-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 VF_0211 bed8553398d5da59ad2498643510238e 165 SUPERFAMILY SSF89562 2 158 3.92E-45 T 10-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily VF_0211 bed8553398d5da59ad2498643510238e 165 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 8.8E-66 T 10-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 VF_0211 bed8553398d5da59ad2498643510238e 165 Pfam PF03737 Aldolase/RraA 6 153 4.4E-37 T 10-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein VF_0211 bed8553398d5da59ad2498643510238e 165 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 44.388 T 10-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 VF_0844 be74f517127a9aa9e71e6415836c49ad 242 Pfam PF13723 Beta-ketoacyl synthase, N-terminal domain 27 240 2.9E-76 T 10-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal VF_0844 be74f517127a9aa9e71e6415836c49ad 242 SUPERFAMILY SSF53901 38 167 3.46E-6 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0240 d1ab8698654cad4ef5a6614fce3a364f 92 SUPERFAMILY SSF54570 3 84 2.88E-35 T 10-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0240 d1ab8698654cad4ef5a6614fce3a364f 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 9.8E-46 T 10-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 VF_0240 d1ab8698654cad4ef5a6614fce3a364f 92 Pfam PF00203 Ribosomal protein S19 3 83 1.7E-35 T 10-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0240 d1ab8698654cad4ef5a6614fce3a364f 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.013 T 10-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0240 d1ab8698654cad4ef5a6614fce3a364f 92 Gene3D G3DSA:3.30.860.10 1 92 1.0E-42 T 10-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0240 d1ab8698654cad4ef5a6614fce3a364f 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 2.2E-23 T 10-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0240 d1ab8698654cad4ef5a6614fce3a364f 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 2.2E-23 T 10-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0240 d1ab8698654cad4ef5a6614fce3a364f 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 2.2E-23 T 10-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0240 d1ab8698654cad4ef5a6614fce3a364f 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 10-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0240 d1ab8698654cad4ef5a6614fce3a364f 92 PIRSF PIRSF002144 1 92 8.2E-31 T 10-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_A0099 730267d77c8fbe4e8d1a902cc0e95f59 257 Pfam PF02754 Cysteine-rich domain 8 85 2.2E-5 T 10-10-2018 IPR004017 Cysteine-rich domain VF_A0099 730267d77c8fbe4e8d1a902cc0e95f59 257 Pfam PF02754 Cysteine-rich domain 121 203 1.6E-7 T 10-10-2018 IPR004017 Cysteine-rich domain VF_0286 5ab8f51a887427f0c2fcd9b435ad2deb 272 Gene3D G3DSA:3.40.50.150 3 200 1.6E-64 T 10-10-2018 VF_0286 5ab8f51a887427f0c2fcd9b435ad2deb 272 SUPERFAMILY SSF53335 10 266 6.65E-80 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_0286 5ab8f51a887427f0c2fcd9b435ad2deb 272 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 12 265 4.0E-88 T 10-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 VF_0286 5ab8f51a887427f0c2fcd9b435ad2deb 272 Pfam PF00398 Ribosomal RNA adenine dimethylase 11 266 1.1E-78 T 10-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm VF_0286 5ab8f51a887427f0c2fcd9b435ad2deb 272 Gene3D G3DSA:1.10.8.100 202 268 2.5E-25 T 10-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 VF_0286 5ab8f51a887427f0c2fcd9b435ad2deb 272 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 11 266 55.709 T 10-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 VF_0286 5ab8f51a887427f0c2fcd9b435ad2deb 272 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 43 70 - T 10-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 VF_0286 5ab8f51a887427f0c2fcd9b435ad2deb 272 SMART SM00650 27 199 4.0E-87 T 10-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 VF_0380 61c2e5832436c23516bec8c631394cdb 179 Pfam PF04751 Protein of unknown function (DUF615) 21 171 1.9E-57 T 10-10-2018 IPR006839 Ribosome-associated, YjgA VF_0380 61c2e5832436c23516bec8c631394cdb 179 SUPERFAMILY SSF158710 31 174 1.83E-53 T 10-10-2018 IPR023153 PSPTO4464-like domain superfamily VF_0380 61c2e5832436c23516bec8c631394cdb 179 PIRSF PIRSF016183 4 179 6.4E-73 T 10-10-2018 IPR006839 Ribosome-associated, YjgA VF_0380 61c2e5832436c23516bec8c631394cdb 179 Gene3D G3DSA:1.10.60.30 107 177 8.9E-27 T 10-10-2018 VF_0380 61c2e5832436c23516bec8c631394cdb 179 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 11 175 23.428 T 10-10-2018 IPR006839 Ribosome-associated, YjgA VF_0380 61c2e5832436c23516bec8c631394cdb 179 Gene3D G3DSA:1.10.60.30 31 105 1.9E-27 T 10-10-2018 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 SUPERFAMILY SSF52935 323 469 6.8E-34 T 10-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 10-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 SUPERFAMILY SSF50800 70 167 4.71E-29 T 10-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 Gene3D G3DSA:3.40.1380.20 336 467 4.6E-41 T 10-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 341 1.5E-154 T 10-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 9.8E-28 T 10-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 Gene3D G3DSA:3.20.20.60 4 332 2.1E-147 T 10-10-2018 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 3.2E-78 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 3.2E-78 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 3.2E-78 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 3.2E-78 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 3.2E-78 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 3.2E-78 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 3.2E-78 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 Gene3D G3DSA:2.40.33.10 71 167 2.1E-147 T 10-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 9.8E-188 T 10-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VF_2258 23f83fb0de77d4f830e996f8392e76f0 470 SUPERFAMILY SSF51621 1 339 8.37E-102 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VF_2354 742c672eb498c94e72a61f57c42be01d 433 PIRSF PIRSF004539 1 433 2.2E-177 T 10-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VF_2354 742c672eb498c94e72a61f57c42be01d 433 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 433 1.9E-185 T 10-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VF_2354 742c672eb498c94e72a61f57c42be01d 433 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 365 1.9E-151 T 10-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VF_A0653 346075b35d01ff18c53b51c0f7ceb38d 150 Gene3D G3DSA:3.40.630.30 5 149 1.4E-40 T 10-10-2018 VF_A0653 346075b35d01ff18c53b51c0f7ceb38d 150 Pfam PF13673 Acetyltransferase (GNAT) domain 25 117 1.8E-13 T 10-10-2018 IPR000182 GNAT domain VF_A0653 346075b35d01ff18c53b51c0f7ceb38d 150 SUPERFAMILY SSF55729 14 147 1.27E-25 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_B0026 3f2389a407ac3af83abebaa5874e7c32 479 Pfam PF00263 Bacterial type II and III secretion system protein 317 476 2.4E-8 T 10-10-2018 IPR004846 Type II/III secretion system GO:0009306 VF_B0026 3f2389a407ac3af83abebaa5874e7c32 479 Gene3D G3DSA:3.55.50.30 61 145 8.4E-6 T 10-10-2018 VF_A0105 9d3366d7c026d92f197e909777f0e34c 311 SUPERFAMILY SSF46785 3 80 1.2E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0105 9d3366d7c026d92f197e909777f0e34c 311 Gene3D G3DSA:1.10.10.10 1 83 9.4E-29 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0105 9d3366d7c026d92f197e909777f0e34c 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 2.3E-17 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0105 9d3366d7c026d92f197e909777f0e34c 311 SUPERFAMILY SSF53850 87 302 1.12E-40 T 10-10-2018 VF_A0105 9d3366d7c026d92f197e909777f0e34c 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.1E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0105 9d3366d7c026d92f197e909777f0e34c 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.1E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0105 9d3366d7c026d92f197e909777f0e34c 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.1E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0105 9d3366d7c026d92f197e909777f0e34c 311 Pfam PF03466 LysR substrate binding domain 94 303 4.2E-17 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0105 9d3366d7c026d92f197e909777f0e34c 311 Gene3D G3DSA:3.40.190.10 89 299 2.4E-49 T 10-10-2018 VF_A0105 9d3366d7c026d92f197e909777f0e34c 311 Gene3D G3DSA:3.40.190.10 177 275 2.4E-49 T 10-10-2018 VF_0807 9481cc56431cb91e67d6eeef0eae9539 378 Gene3D G3DSA:3.20.20.140 55 341 2.7E-142 T 10-10-2018 VF_0807 9481cc56431cb91e67d6eeef0eae9539 378 SUPERFAMILY SSF51338 1 53 1.64E-17 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_0807 9481cc56431cb91e67d6eeef0eae9539 378 Gene3D G3DSA:2.30.40.10 6 373 2.7E-142 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_0807 9481cc56431cb91e67d6eeef0eae9539 378 Pfam PF01979 Amidohydrolase family 50 374 1.5E-36 T 10-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VF_0807 9481cc56431cb91e67d6eeef0eae9539 378 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 374 3.9E-152 T 10-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 VF_0807 9481cc56431cb91e67d6eeef0eae9539 378 SUPERFAMILY SSF51556 54 347 1.73E-101 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_0807 9481cc56431cb91e67d6eeef0eae9539 378 PIRSF PIRSF038994 1 378 6.2E-122 T 10-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 VF_1240 48ae780f9713f76d8ff6f2c83dcbcc55 160 Gene3D G3DSA:3.30.70.860 95 160 1.6E-29 T 10-10-2018 IPR035571 UPF0234-like, C-terminal VF_1240 48ae780f9713f76d8ff6f2c83dcbcc55 160 Gene3D G3DSA:3.30.70.990 9 94 1.2E-28 T 10-10-2018 IPR035570 UPF0234, N-terminal VF_1240 48ae780f9713f76d8ff6f2c83dcbcc55 160 SUPERFAMILY SSF89963 88 160 6.93E-28 T 10-10-2018 IPR036183 YajQ-like superfamily VF_1240 48ae780f9713f76d8ff6f2c83dcbcc55 160 SUPERFAMILY SSF89963 2 86 4.19E-31 T 10-10-2018 IPR036183 YajQ-like superfamily VF_1240 48ae780f9713f76d8ff6f2c83dcbcc55 160 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 160 29.258 T 10-10-2018 IPR007551 Protein of unknown function DUF520 VF_1240 48ae780f9713f76d8ff6f2c83dcbcc55 160 Pfam PF04461 Protein of unknown function (DUF520) 2 159 1.2E-62 T 10-10-2018 IPR007551 Protein of unknown function DUF520 VF_1400 8ccab35ace83284a4f2378c7b562e358 680 Gene3D G3DSA:3.30.565.10 522 678 4.6E-39 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1400 8ccab35ace83284a4f2378c7b562e358 680 SUPERFAMILY SSF55874 506 669 4.85E-37 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1400 8ccab35ace83284a4f2378c7b562e358 680 SUPERFAMILY SSF103190 168 311 9.68E-13 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_1400 8ccab35ace83284a4f2378c7b562e358 680 Pfam PF00512 His Kinase A (phospho-acceptor) domain 449 514 1.5E-13 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_1400 8ccab35ace83284a4f2378c7b562e358 680 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 563 669 8.5E-17 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1400 8ccab35ace83284a4f2378c7b562e358 680 SUPERFAMILY SSF47384 444 513 1.96E-11 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_1400 8ccab35ace83284a4f2378c7b562e358 680 SMART SM00388 449 516 3.0E-11 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_1400 8ccab35ace83284a4f2378c7b562e358 680 Gene3D G3DSA:1.10.287.130 441 514 2.3E-23 T 10-10-2018 VF_1400 8ccab35ace83284a4f2378c7b562e358 680 SMART SM00387 559 670 4.9E-27 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1400 8ccab35ace83284a4f2378c7b562e358 680 Pfam PF17202 Single cache domain 3 200 319 2.7E-27 T 10-10-2018 IPR033463 Single cache domain 3 VF_1400 8ccab35ace83284a4f2378c7b562e358 680 PRINTS PR00344 Bacterial sensor protein C-terminal signature 601 615 4.4E-18 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1400 8ccab35ace83284a4f2378c7b562e358 680 PRINTS PR00344 Bacterial sensor protein C-terminal signature 630 648 4.4E-18 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1400 8ccab35ace83284a4f2378c7b562e358 680 PRINTS PR00344 Bacterial sensor protein C-terminal signature 654 667 4.4E-18 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1400 8ccab35ace83284a4f2378c7b562e358 680 PRINTS PR00344 Bacterial sensor protein C-terminal signature 619 629 4.4E-18 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 10-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 Pfam PF00549 CoA-ligase 151 270 4.9E-22 T 10-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 PIRSF PIRSF001553 1 289 4.0E-133 T 10-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 SMART SM00881 4 100 2.7E-36 T 10-10-2018 IPR003781 CoA-binding GO:0048037 VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 Pfam PF02629 CoA binding domain 6 99 2.2E-31 T 10-10-2018 IPR003781 CoA-binding GO:0048037 VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 287 3.6E-144 T 10-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 SUPERFAMILY SSF51735 1 122 1.83E-41 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 Gene3D G3DSA:3.40.50.720 1 123 1.7E-49 T 10-10-2018 VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 2.1E-40 T 10-10-2018 VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 2.1E-40 T 10-10-2018 VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 2.1E-40 T 10-10-2018 VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 2.1E-40 T 10-10-2018 VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 10-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 Gene3D G3DSA:3.40.50.261 124 288 1.1E-76 T 10-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.184 T 10-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VF_0826 514b4f4d793ee3c4f0e635a4b6441958 290 SUPERFAMILY SSF52210 123 286 4.58E-57 T 10-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VF_A0539 64360a96fa8788c6bc4ad91d1dba0f17 997 Gene3D G3DSA:3.40.50.300 471 707 1.5E-41 T 10-10-2018 VF_A0539 64360a96fa8788c6bc4ad91d1dba0f17 997 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 40 692 1.1E-165 T 10-10-2018 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 VF_A0539 64360a96fa8788c6bc4ad91d1dba0f17 997 Pfam PF04851 Type III restriction enzyme, res subunit 292 446 1.0E-17 T 10-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 VF_A0539 64360a96fa8788c6bc4ad91d1dba0f17 997 Gene3D G3DSA:3.40.50.300 289 464 8.3E-49 T 10-10-2018 VF_A0539 64360a96fa8788c6bc4ad91d1dba0f17 997 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 40 220 1.7E-24 T 10-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 VF_A0539 64360a96fa8788c6bc4ad91d1dba0f17 997 SUPERFAMILY SSF52540 405 781 1.02E-9 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0539 64360a96fa8788c6bc4ad91d1dba0f17 997 Gene3D G3DSA:3.90.1570.50 118 283 5.2E-11 T 10-10-2018 VF_A0539 64360a96fa8788c6bc4ad91d1dba0f17 997 SUPERFAMILY SSF52540 251 506 3.93E-31 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0539 64360a96fa8788c6bc4ad91d1dba0f17 997 SMART SM00487 286 474 6.1E-14 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 ProSitePatterns PS00756 Protein secY signature 2. 171 188 - T 10-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 ProSitePatterns PS00755 Protein secY signature 1. 76 95 - T 10-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 SUPERFAMILY SSF103491 15 424 6.54E-132 T 10-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 20 429 3.8E-135 T 10-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 Hamap MF_01465 Protein translocase subunit SecY [secY]. 11 433 29.212 T 10-10-2018 IPR026593 Protein translocase subunit SecY VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 116 139 7.1E-95 T 10-10-2018 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 370 388 7.1E-95 T 10-10-2018 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 23 41 7.1E-95 T 10-10-2018 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 402 420 7.1E-95 T 10-10-2018 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 178 201 7.1E-95 T 10-10-2018 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 75 95 7.1E-95 T 10-10-2018 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 152 177 7.1E-95 T 10-10-2018 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 315 337 7.1E-95 T 10-10-2018 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 270 289 7.1E-95 T 10-10-2018 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 Pfam PF00344 SecY translocase 76 417 6.6E-118 T 10-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 Gene3D G3DSA:1.10.3370.10 11 429 7.0E-160 T 10-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VF_0257 30755a959408c51cbc4ec90c32ad07f1 443 PIRSF PIRSF004557 8 441 5.2E-121 T 10-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VF_0764 7b32b459d9817ec734c4a0b7e342fc87 332 Gene3D G3DSA:3.40.50.2020 165 307 5.1E-135 T 10-10-2018 VF_0764 7b32b459d9817ec734c4a0b7e342fc87 332 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 21 331 6.9E-126 T 10-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 VF_0764 7b32b459d9817ec734c4a0b7e342fc87 332 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 21 331 49.641 T 10-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 VF_0764 7b32b459d9817ec734c4a0b7e342fc87 332 Gene3D G3DSA:3.40.50.2020 24 319 5.1E-135 T 10-10-2018 VF_0764 7b32b459d9817ec734c4a0b7e342fc87 332 SMART SM01400 21 138 2.7E-78 T 10-10-2018 VF_0764 7b32b459d9817ec734c4a0b7e342fc87 332 Pfam PF14572 Phosphoribosyl synthetase-associated domain 221 330 8.5E-31 T 10-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 VF_0764 7b32b459d9817ec734c4a0b7e342fc87 332 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 21 138 6.9E-51 T 10-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 VF_0764 7b32b459d9817ec734c4a0b7e342fc87 332 SUPERFAMILY SSF53271 86 323 3.49E-66 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like VF_0764 7b32b459d9817ec734c4a0b7e342fc87 332 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 146 161 - T 10-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 VF_2433 631896a82d33f7e80f0d5bbf84e70dd6 262 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 210 9.8E-25 T 10-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_2433 631896a82d33f7e80f0d5bbf84e70dd6 262 SUPERFAMILY SSF53681 107 255 2.49E-34 T 10-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_2433 631896a82d33f7e80f0d5bbf84e70dd6 262 SUPERFAMILY SSF53681 4 105 2.35E-31 T 10-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_2433 631896a82d33f7e80f0d5bbf84e70dd6 262 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 70 78 - T 10-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_2433 631896a82d33f7e80f0d5bbf84e70dd6 262 Hamap MF_00258 Glutamate racemase [murI]. 3 250 33.625 T 10-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_2433 631896a82d33f7e80f0d5bbf84e70dd6 262 TIGRFAM TIGR00067 glut_race: glutamate racemase 5 219 4.4E-71 T 10-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_2433 631896a82d33f7e80f0d5bbf84e70dd6 262 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 176 186 - T 10-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_2433 631896a82d33f7e80f0d5bbf84e70dd6 262 Gene3D G3DSA:3.40.50.1860 7 233 2.5E-83 T 10-10-2018 VF_2433 631896a82d33f7e80f0d5bbf84e70dd6 262 Gene3D G3DSA:3.40.50.1860 95 203 2.5E-83 T 10-10-2018 VF_1810 139af4b26fd7b66a80dfa7e9e2747eef 699 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 505 598 1.3E-25 T 10-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VF_1810 139af4b26fd7b66a80dfa7e9e2747eef 699 TIGRFAM TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ 18 697 0.0 T 10-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VF_1810 139af4b26fd7b66a80dfa7e9e2747eef 699 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 324 502 4.1E-53 T 10-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VF_1810 139af4b26fd7b66a80dfa7e9e2747eef 699 Pfam PF00378 Enoyl-CoA hydratase/isomerase 26 213 1.1E-37 T 10-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 VF_1810 139af4b26fd7b66a80dfa7e9e2747eef 699 Gene3D G3DSA:3.40.50.720 315 507 1.9E-56 T 10-10-2018 VF_1810 139af4b26fd7b66a80dfa7e9e2747eef 699 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 118 138 - T 10-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 VF_1810 139af4b26fd7b66a80dfa7e9e2747eef 699 Gene3D G3DSA:3.90.226.10 13 314 8.6E-96 T 10-10-2018 VF_1810 139af4b26fd7b66a80dfa7e9e2747eef 699 Gene3D G3DSA:1.10.1040.50 508 699 7.6E-64 T 10-10-2018 VF_1810 139af4b26fd7b66a80dfa7e9e2747eef 699 SUPERFAMILY SSF51735 321 503 4.83E-47 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1810 139af4b26fd7b66a80dfa7e9e2747eef 699 Hamap MF_01617 Fatty acid oxidation complex subunit alpha [fadJ]. 13 699 51.506 T 10-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VF_1810 139af4b26fd7b66a80dfa7e9e2747eef 699 SUPERFAMILY SSF52096 15 313 9.79E-65 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VF_1810 139af4b26fd7b66a80dfa7e9e2747eef 699 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 502 527 - T 10-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VF_1810 139af4b26fd7b66a80dfa7e9e2747eef 699 SUPERFAMILY SSF48179 505 604 1.36E-27 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VF_1810 139af4b26fd7b66a80dfa7e9e2747eef 699 SUPERFAMILY SSF48179 622 697 3.32E-18 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VF_2465 efed061b87cf36053eded0c7de21187c 163 PIRSF PIRSF006291 1 161 8.9E-38 T 10-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 VF_2465 efed061b87cf36053eded0c7de21187c 163 SUPERFAMILY SSF103054 84 160 1.44E-23 T 10-10-2018 IPR023229 Type II secretion system protein M, periplasmic domain superfamily VF_2465 efed061b87cf36053eded0c7de21187c 163 Pfam PF04612 Type II secretion system (T2SS), protein M 2 160 7.6E-53 T 10-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 VF_2465 efed061b87cf36053eded0c7de21187c 163 Gene3D G3DSA:3.30.1360.100 83 163 2.1E-30 T 10-10-2018 VF_0255 311c943cd00f9400280ca28575592937 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 59 8.6E-23 T 10-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0255 311c943cd00f9400280ca28575592937 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 20.934 T 10-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0255 311c943cd00f9400280ca28575592937 59 PIRSF PIRSF002211 1 59 2.0E-27 T 10-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0255 311c943cd00f9400280ca28575592937 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 55 1.3E-19 T 10-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain VF_0255 311c943cd00f9400280ca28575592937 59 Gene3D G3DSA:3.30.1390.20 1 59 8.6E-27 T 10-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily VF_0255 311c943cd00f9400280ca28575592937 59 SUPERFAMILY SSF55129 3 59 1.44E-21 T 10-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily VF_A0555 b9fd9c2366337d0732f8f08f7e5b6d32 270 Gene3D G3DSA:3.40.190.10 27 263 2.2E-66 T 10-10-2018 VF_A0555 b9fd9c2366337d0732f8f08f7e5b6d32 270 SUPERFAMILY SSF53850 27 269 1.89E-57 T 10-10-2018 VF_A0555 b9fd9c2366337d0732f8f08f7e5b6d32 270 Pfam PF12849 PBP superfamily domain 23 258 5.7E-37 T 10-10-2018 IPR024370 PBP domain VF_A0555 b9fd9c2366337d0732f8f08f7e5b6d32 270 Gene3D G3DSA:3.40.190.10 97 232 2.2E-66 T 10-10-2018 VF_0710 c12571810243126162ff22a2b80f9806 116 Pfam PF03992 Antibiotic biosynthesis monooxygenase 6 85 1.5E-9 T 10-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain VF_0710 c12571810243126162ff22a2b80f9806 116 Gene3D G3DSA:3.30.70.100 5 108 7.7E-21 T 10-10-2018 VF_0710 c12571810243126162ff22a2b80f9806 116 SUPERFAMILY SSF54909 5 86 2.64E-18 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel VF_1384 80d8809981b7b1eeccfb10f300bdfaeb 214 Pfam PF13410 Glutathione S-transferase, C-terminal domain 127 185 5.3E-9 T 10-10-2018 VF_1384 80d8809981b7b1eeccfb10f300bdfaeb 214 SUPERFAMILY SSF52833 5 104 2.21E-18 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1384 80d8809981b7b1eeccfb10f300bdfaeb 214 Gene3D G3DSA:1.20.1050.10 107 208 4.3E-11 T 10-10-2018 VF_1384 80d8809981b7b1eeccfb10f300bdfaeb 214 Gene3D G3DSA:3.40.30.10 2 96 1.1E-14 T 10-10-2018 VF_1384 80d8809981b7b1eeccfb10f300bdfaeb 214 SUPERFAMILY SSF47616 112 206 1.19E-18 T 10-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VF_1384 80d8809981b7b1eeccfb10f300bdfaeb 214 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 75 1.5E-14 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VF_1719 9333d4a93f1c84aa997e19c78646b7b3 525 SUPERFAMILY SSF55604 450 521 1.31E-20 T 10-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VF_1719 9333d4a93f1c84aa997e19c78646b7b3 525 Pfam PF00367 phosphotransferase system, EIIB 451 482 1.3E-14 T 10-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VF_1719 9333d4a93f1c84aa997e19c78646b7b3 525 Gene3D G3DSA:3.30.1360.60 443 523 6.1E-26 T 10-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VF_1719 9333d4a93f1c84aa997e19c78646b7b3 525 TIGRFAM TIGR02004 PTS-IIBC-malX: PTS system, maltose and glucose-specific IIBC component 7 521 1.7E-270 T 10-10-2018 IPR011301 PTS system, maltose/glucose-specific IIBC component GO:0008982|GO:0009401 KEGG: 00500+2.7.1.208 VF_1719 9333d4a93f1c84aa997e19c78646b7b3 525 Pfam PF02378 Phosphotransferase system, EIIC 18 358 3.8E-84 T 10-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VF_1719 9333d4a93f1c84aa997e19c78646b7b3 525 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 460 477 - T 10-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VF_1719 9333d4a93f1c84aa997e19c78646b7b3 525 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 418 507 3.4E-21 T 10-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 VF_A0386 9bf75358c587c0254cb3ddd770d17d42 487 Gene3D G3DSA:3.10.580.10 418 485 2.2E-5 T 10-10-2018 VF_A0386 9bf75358c587c0254cb3ddd770d17d42 487 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 171 181 - T 10-10-2018 IPR024002 Formate/nitrite transporter, conserved site VF_A0386 9bf75358c587c0254cb3ddd770d17d42 487 Gene3D G3DSA:1.20.1080.10 6 270 1.5E-86 T 10-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VF_A0386 9bf75358c587c0254cb3ddd770d17d42 487 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 17 281 3.7E-109 T 10-10-2018 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 VF_A0386 9bf75358c587c0254cb3ddd770d17d42 487 SUPERFAMILY SSF54631 309 466 1.11E-19 T 10-10-2018 VF_A0386 9bf75358c587c0254cb3ddd770d17d42 487 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 30 281 4.5E-72 T 10-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 VF_A0386 9bf75358c587c0254cb3ddd770d17d42 487 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 86 95 - T 10-10-2018 IPR024002 Formate/nitrite transporter, conserved site VF_A0386 9bf75358c587c0254cb3ddd770d17d42 487 Pfam PF01226 Formate/nitrite transporter 17 278 1.6E-71 T 10-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 VF_A0386 9bf75358c587c0254cb3ddd770d17d42 487 Gene3D G3DSA:3.10.580.10 310 417 9.1E-13 T 10-10-2018 VF_A0386 9bf75358c587c0254cb3ddd770d17d42 487 Pfam PF00571 CBS domain 317 369 3.5E-4 T 10-10-2018 IPR000644 CBS domain VF_A0386 9bf75358c587c0254cb3ddd770d17d42 487 Pfam PF00571 CBS domain 382 465 6.1E-5 T 10-10-2018 IPR000644 CBS domain VF_A0386 9bf75358c587c0254cb3ddd770d17d42 487 SMART SM00116 420 467 0.42 T 10-10-2018 IPR000644 CBS domain VF_A0386 9bf75358c587c0254cb3ddd770d17d42 487 SMART SM00116 322 370 2.0E-5 T 10-10-2018 IPR000644 CBS domain VF_1556 4a4c5cf0b03ff7b05d66414b6a5ab6a4 257 Pfam PF02253 Phospholipase A1 20 253 7.8E-63 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VF_1556 4a4c5cf0b03ff7b05d66414b6a5ab6a4 257 PRINTS PR01486 Bacterial phospholipase A1 protein signature 226 246 7.3E-26 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VF_1556 4a4c5cf0b03ff7b05d66414b6a5ab6a4 257 PRINTS PR01486 Bacterial phospholipase A1 protein signature 55 72 7.3E-26 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VF_1556 4a4c5cf0b03ff7b05d66414b6a5ab6a4 257 PRINTS PR01486 Bacterial phospholipase A1 protein signature 204 221 7.3E-26 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VF_1556 4a4c5cf0b03ff7b05d66414b6a5ab6a4 257 PRINTS PR01486 Bacterial phospholipase A1 protein signature 171 189 7.3E-26 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VF_1556 4a4c5cf0b03ff7b05d66414b6a5ab6a4 257 PRINTS PR01486 Bacterial phospholipase A1 protein signature 139 157 7.3E-26 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VF_1556 4a4c5cf0b03ff7b05d66414b6a5ab6a4 257 PRINTS PR01486 Bacterial phospholipase A1 protein signature 124 138 7.3E-26 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VF_1556 4a4c5cf0b03ff7b05d66414b6a5ab6a4 257 SUPERFAMILY SSF56931 15 255 1.83E-73 T 10-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VF_1556 4a4c5cf0b03ff7b05d66414b6a5ab6a4 257 Gene3D G3DSA:2.40.230.10 12 255 1.9E-70 T 10-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 SUPERFAMILY SSF53850 6 220 7.49E-85 T 10-10-2018 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 232 248 - T 10-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 Gene3D G3DSA:3.30.160.40 222 307 1.5E-28 T 10-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 PIRSF PIRSF001438 1 311 2.0E-121 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 PRINTS PR00151 Porphobilinogen deaminase signature 144 161 1.0E-48 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 PRINTS PR00151 Porphobilinogen deaminase signature 46 66 1.0E-48 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 PRINTS PR00151 Porphobilinogen deaminase signature 77 96 1.0E-48 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 PRINTS PR00151 Porphobilinogen deaminase signature 125 142 1.0E-48 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 PRINTS PR00151 Porphobilinogen deaminase signature 231 248 1.0E-48 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 7 298 1.6E-114 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 7 213 1.8E-78 T 10-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 6 298 39.83 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 Gene3D G3DSA:3.40.190.10 104 203 5.2E-84 T 10-10-2018 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 228 297 2.2E-21 T 10-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 Gene3D G3DSA:3.40.190.10 7 211 5.2E-84 T 10-10-2018 VF_0066 ec2d31687cb0c7cfaf02f6bf8c959ad8 311 SUPERFAMILY SSF54782 221 310 7.06E-29 T 10-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_2223 2f28a800cfe49ebbfcd274e953c9a3d0 381 Hamap MF_01919 Cell division protein ZapE [zapE]. 14 381 55.897 T 10-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 VF_2223 2f28a800cfe49ebbfcd274e953c9a3d0 381 Gene3D G3DSA:3.40.50.300 8 207 3.9E-21 T 10-10-2018 VF_2223 2f28a800cfe49ebbfcd274e953c9a3d0 381 SUPERFAMILY SSF52540 57 214 1.31E-14 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2223 2f28a800cfe49ebbfcd274e953c9a3d0 381 Pfam PF03969 AFG1-like ATPase 14 378 1.9E-158 T 10-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 VF_A0314 a159e32dd1186115fa104570c8644d26 465 PIRSF PIRSF019381 1 465 2.0E-218 T 10-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein VF_A0314 a159e32dd1186115fa104570c8644d26 465 Pfam PF04317 YcjX-like family, DUF463 20 464 9.6E-186 T 10-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein VF_1575 fee5a483c9622bd296907b64554cafbb 100 SUPERFAMILY SSF46767 2 84 1.96E-24 T 10-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 VF_1575 fee5a483c9622bd296907b64554cafbb 100 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 3 75 1.8E-13 T 10-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 VF_1575 fee5a483c9622bd296907b64554cafbb 100 Gene3D G3DSA:1.10.10.10 1 100 6.4E-32 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1575 fee5a483c9622bd296907b64554cafbb 100 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 3 83 4.8E-24 T 10-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 VF_A0336 e47fb248f27834c3bd507f0403328579 131 Pfam PF07681 DoxX 5 86 4.7E-11 T 10-10-2018 IPR032808 DoxX family VF_1117 a6836889cc90df698ae9e3afc4e3d7ae 604 Gene3D G3DSA:1.10.287.950 273 602 1.5E-62 T 10-10-2018 VF_1117 a6836889cc90df698ae9e3afc4e3d7ae 604 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 387 563 1.2E-38 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1117 a6836889cc90df698ae9e3afc4e3d7ae 604 Gene3D G3DSA:3.30.450.20 55 149 2.3E-8 T 10-10-2018 VF_1117 a6836889cc90df698ae9e3afc4e3d7ae 604 Pfam PF02743 Cache domain 16 223 5.4E-20 T 10-10-2018 IPR033479 Double Cache domain 1 VF_1117 a6836889cc90df698ae9e3afc4e3d7ae 604 SUPERFAMILY SSF58104 313 601 1.14E-62 T 10-10-2018 VF_1117 a6836889cc90df698ae9e3afc4e3d7ae 604 SMART SM00283 339 600 2.9E-57 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1137 e7c5438501e470830a45bace9e1b7f4d 196 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 3 187 3.9E-74 T 10-10-2018 IPR014094 Penicillin-binding protein activator LpoB VF_1137 e7c5438501e470830a45bace9e1b7f4d 196 Pfam PF13036 Peptidoglycan-synthase activator LpoB 41 185 4.9E-56 T 10-10-2018 IPR014094 Penicillin-binding protein activator LpoB VF_1137 e7c5438501e470830a45bace9e1b7f4d 196 Gene3D G3DSA:3.40.50.10610 39 188 2.4E-42 T 10-10-2018 VF_0427 02e1d19b20d00e5a89de416fca34fd05 95 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 3 89 2.8E-27 T 10-10-2018 IPR005228 Conserved hypothetical protein CHP00251 VF_0427 02e1d19b20d00e5a89de416fca34fd05 95 SMART SM01152 6 82 1.6E-39 T 10-10-2018 IPR003746 Protein of unknown function DUF167 VF_0427 02e1d19b20d00e5a89de416fca34fd05 95 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 10 80 1.8E-26 T 10-10-2018 IPR003746 Protein of unknown function DUF167 VF_0427 02e1d19b20d00e5a89de416fca34fd05 95 Gene3D G3DSA:3.30.1200.10 1 95 1.9E-34 T 10-10-2018 IPR036591 YggU-like superfamily VF_0427 02e1d19b20d00e5a89de416fca34fd05 95 SUPERFAMILY SSF69786 2 94 4.84E-33 T 10-10-2018 IPR036591 YggU-like superfamily VF_0427 02e1d19b20d00e5a89de416fca34fd05 95 Hamap MF_00634 UPF0235 protein YggU [yggU]. 6 92 20.265 T 10-10-2018 IPR003746 Protein of unknown function DUF167 VF_1805 13f6bdcb02c84406aae8459f21532735 361 Gene3D G3DSA:3.60.150.10 1 360 7.1E-160 T 10-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VF_1805 13f6bdcb02c84406aae8459f21532735 361 SUPERFAMILY SSF103263 4 355 1.96E-149 T 10-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VF_1805 13f6bdcb02c84406aae8459f21532735 361 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 10-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VF_1805 13f6bdcb02c84406aae8459f21532735 361 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 10-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VF_1805 13f6bdcb02c84406aae8459f21532735 361 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 2.5E-142 T 10-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VF_1805 13f6bdcb02c84406aae8459f21532735 361 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 10-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VF_1805 13f6bdcb02c84406aae8459f21532735 361 Pfam PF01264 Chorismate synthase 10 344 1.7E-144 T 10-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VF_1805 13f6bdcb02c84406aae8459f21532735 361 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 37.593 T 10-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VF_1805 13f6bdcb02c84406aae8459f21532735 361 PIRSF PIRSF001456 3 360 4.5E-142 T 10-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VF_1206 6e272d924507c3254e7da066c4baa45a 182 SUPERFAMILY SSF48317 32 154 9.42E-28 T 10-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily VF_1206 6e272d924507c3254e7da066c4baa45a 182 SMART SM00014 54 154 1.9E-9 T 10-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VF_1206 6e272d924507c3254e7da066c4baa45a 182 Gene3D G3DSA:1.20.144.10 83 162 1.1E-15 T 10-10-2018 VF_1206 6e272d924507c3254e7da066c4baa45a 182 Pfam PF01569 PAP2 superfamily 84 154 3.7E-12 T 10-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VF_A1156 29d5ebd4b076629e88647fe5ebc99270 638 Pfam PF16124 RecQ zinc-binding 508 555 4.4E-9 T 10-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain VF_A1156 29d5ebd4b076629e88647fe5ebc99270 638 SMART SM00490 241 322 6.0E-26 T 10-10-2018 IPR001650 Helicase, C-terminal VF_A1156 29d5ebd4b076629e88647fe5ebc99270 638 Gene3D G3DSA:3.40.50.300 1 197 4.5E-71 T 10-10-2018 VF_A1156 29d5ebd4b076629e88647fe5ebc99270 638 SMART SM00487 11 207 3.2E-29 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_A1156 29d5ebd4b076629e88647fe5ebc99270 638 Gene3D G3DSA:1.10.10.10 492 637 5.8E-11 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1156 29d5ebd4b076629e88647fe5ebc99270 638 SUPERFAMILY SSF52540 56 337 2.41E-58 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A1156 29d5ebd4b076629e88647fe5ebc99270 638 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 5 347 6.9E-113 T 10-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 VF_A1156 29d5ebd4b076629e88647fe5ebc99270 638 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 130 139 - T 10-10-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site VF_A1156 29d5ebd4b076629e88647fe5ebc99270 638 Gene3D G3DSA:3.40.50.300 199 387 1.1E-44 T 10-10-2018 VF_A1156 29d5ebd4b076629e88647fe5ebc99270 638 Pfam PF00271 Helicase conserved C-terminal domain 214 321 3.2E-18 T 10-10-2018 IPR001650 Helicase, C-terminal VF_A1156 29d5ebd4b076629e88647fe5ebc99270 638 Pfam PF00270 DEAD/DEAH box helicase 19 177 1.4E-17 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_0460 493d35eb8c1c6840630a1fad56673363 285 SUPERFAMILY SSF55831 4 285 4.19E-92 T 10-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VF_0460 493d35eb8c1c6840630a1fad56673363 285 Hamap MF_00008 Thymidylate synthase [thyA]. 3 285 32.508 T 10-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VF_0460 493d35eb8c1c6840630a1fad56673363 285 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 4 285 2.0E-44 T 10-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VF_0460 493d35eb8c1c6840630a1fad56673363 285 ProSitePatterns PS00091 Thymidylate synthase active site. 142 170 - T 10-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VF_0460 493d35eb8c1c6840630a1fad56673363 285 PRINTS PR00108 Thymidylate synthase family signature 213 230 5.7E-14 T 10-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VF_0460 493d35eb8c1c6840630a1fad56673363 285 PRINTS PR00108 Thymidylate synthase family signature 175 201 5.7E-14 T 10-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VF_0460 493d35eb8c1c6840630a1fad56673363 285 PRINTS PR00108 Thymidylate synthase family signature 46 67 5.7E-14 T 10-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VF_0460 493d35eb8c1c6840630a1fad56673363 285 PRINTS PR00108 Thymidylate synthase family signature 131 150 5.7E-14 T 10-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VF_0460 493d35eb8c1c6840630a1fad56673363 285 Pfam PF00303 Thymidylate synthase 4 285 3.0E-75 T 10-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VF_0460 493d35eb8c1c6840630a1fad56673363 285 Gene3D G3DSA:3.30.572.10 1 285 4.0E-82 T 10-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VF_0696 bb9997c13a70ec7882bb63185397a0be 1569 Pfam PF17291 N-terminal domain of M60-like peptidases 1078 1190 1.4E-22 T 10-10-2018 IPR035423 M60-like domain, N-terminal VF_0696 bb9997c13a70ec7882bb63185397a0be 1569 SMART SM01276 1109 1410 2.5E-73 T 10-10-2018 IPR031161 Peptidase family M60 domain VF_0696 bb9997c13a70ec7882bb63185397a0be 1569 Pfam PF13322 Domain of unknown function (DUF4092) 429 518 2.5E-6 T 10-10-2018 IPR025385 Domain of unknown function DUF4092 VF_0696 bb9997c13a70ec7882bb63185397a0be 1569 Pfam PF13322 Domain of unknown function (DUF4092) 529 582 5.0E-15 T 10-10-2018 IPR025385 Domain of unknown function DUF4092 VF_0696 bb9997c13a70ec7882bb63185397a0be 1569 Pfam PF13402 Peptidase M60, enhancin and enhancin-like 1197 1507 2.8E-93 T 10-10-2018 IPR031161 Peptidase family M60 domain VF_0696 bb9997c13a70ec7882bb63185397a0be 1569 Gene3D G3DSA:1.10.390.30 1340 1535 4.5E-7 T 10-10-2018 VF_1226 e65fce1f4dc635883e2e36975df73506 458 SUPERFAMILY SSF102114 60 440 1.44E-86 T 10-10-2018 VF_1226 e65fce1f4dc635883e2e36975df73506 458 TIGRFAM TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW 25 444 6.6E-182 T 10-10-2018 IPR026332 Putative heme utilization radical SAM enzyme HutW VF_1226 e65fce1f4dc635883e2e36975df73506 458 Pfam PF04055 Radical SAM superfamily 69 238 1.0E-14 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_1226 e65fce1f4dc635883e2e36975df73506 458 Gene3D G3DSA:3.80.30.20 39 366 2.4E-80 T 10-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VF_1226 e65fce1f4dc635883e2e36975df73506 458 SMART SM00729 64 287 1.3E-38 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VF_2381 d45d17190967c13cb586967dcec322f4 610 SMART SM00100 11 128 5.9E-5 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain VF_2381 d45d17190967c13cb586967dcec322f4 610 Gene3D G3DSA:3.10.580.10 138 287 6.9E-20 T 10-10-2018 VF_2381 d45d17190967c13cb586967dcec322f4 610 SMART SM00116 155 213 3.6 T 10-10-2018 IPR000644 CBS domain VF_2381 d45d17190967c13cb586967dcec322f4 610 SMART SM00116 230 277 0.36 T 10-10-2018 IPR000644 CBS domain VF_2381 d45d17190967c13cb586967dcec322f4 610 Pfam PF03445 Putative nucleotidyltransferase DUF294 303 432 2.1E-40 T 10-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 VF_2381 d45d17190967c13cb586967dcec322f4 610 Pfam PF00571 CBS domain 155 213 0.0016 T 10-10-2018 IPR000644 CBS domain VF_2381 d45d17190967c13cb586967dcec322f4 610 Pfam PF00571 CBS domain 223 275 0.0026 T 10-10-2018 IPR000644 CBS domain VF_2381 d45d17190967c13cb586967dcec322f4 610 Gene3D G3DSA:2.60.120.10 11 137 4.0E-15 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_2381 d45d17190967c13cb586967dcec322f4 610 Pfam PF00027 Cyclic nucleotide-binding domain 31 113 2.0E-9 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain VF_2381 d45d17190967c13cb586967dcec322f4 610 SUPERFAMILY SSF51206 9 132 3.67E-19 T 10-10-2018 IPR018490 Cyclic nucleotide-binding-like VF_2381 d45d17190967c13cb586967dcec322f4 610 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 471 606 1.6E-42 T 10-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding VF_2381 d45d17190967c13cb586967dcec322f4 610 SUPERFAMILY SSF54631 144 276 2.15E-19 T 10-10-2018 VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 Gene3D G3DSA:2.40.128.20 15 176 5.6E-51 T 10-10-2018 IPR012674 Calycin VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 ProSitePatterns PS00213 Lipocalin signature. 33 46 - T 10-10-2018 IPR022272 Lipocalin family conserved site VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 PRINTS PR00179 Lipocalin signature 37 49 3.8E-5 T 10-10-2018 VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 PRINTS PR00179 Lipocalin signature 118 130 3.8E-5 T 10-10-2018 VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 PRINTS PR00179 Lipocalin signature 141 156 3.8E-5 T 10-10-2018 VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 PIRSF PIRSF036893 4 176 1.3E-40 T 10-10-2018 IPR022271 Lipocalin, ApoD type VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 SUPERFAMILY SSF50814 15 175 4.05E-50 T 10-10-2018 IPR012674 Calycin VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 Pfam PF08212 Lipocalin-like domain 35 175 7.6E-40 T 10-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 PRINTS PR01171 Bacterial lipocalin signature 51 67 2.1E-33 T 10-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 PRINTS PR01171 Bacterial lipocalin signature 70 79 2.1E-33 T 10-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 PRINTS PR01171 Bacterial lipocalin signature 137 148 2.1E-33 T 10-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 PRINTS PR01171 Bacterial lipocalin signature 34 48 2.1E-33 T 10-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 PRINTS PR01171 Bacterial lipocalin signature 121 129 2.1E-33 T 10-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 PRINTS PR01171 Bacterial lipocalin signature 164 174 2.1E-33 T 10-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VF_A0842 c1a3584760edbc8321e3d6a8df044acd 176 PRINTS PR01171 Bacterial lipocalin signature 104 118 2.1E-33 T 10-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VF_A0765 befcaa1b59e49ab0e00964571cf23d9b 227 SUPERFAMILY SSF51182 112 204 1.93E-17 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_A0765 befcaa1b59e49ab0e00964571cf23d9b 227 TIGRFAM TIGR02451 anti_sig_ChrR: anti-sigma factor, putative, ChrR family 6 224 2.5E-60 T 10-10-2018 IPR012807 Anti-sigma factor ChrR, putative VF_A0765 befcaa1b59e49ab0e00964571cf23d9b 227 Pfam PF12973 ChrR Cupin-like domain 128 202 7.2E-17 T 10-10-2018 IPR025979 ChrR-like cupin domain VF_A0765 befcaa1b59e49ab0e00964571cf23d9b 227 Gene3D G3DSA:1.10.10.1320 2 117 1.6E-14 T 10-10-2018 VF_A0765 befcaa1b59e49ab0e00964571cf23d9b 227 Gene3D G3DSA:2.60.120.10 118 207 2.0E-25 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_2332 a1d54f5b58cfd3c91ba5b80ba73bd076 296 SUPERFAMILY SSF103481 37 141 8.63E-12 T 10-10-2018 VF_2332 a1d54f5b58cfd3c91ba5b80ba73bd076 296 Pfam PF00892 EamA-like transporter family 157 295 7.5E-16 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_2332 a1d54f5b58cfd3c91ba5b80ba73bd076 296 Pfam PF00892 EamA-like transporter family 5 136 1.9E-15 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_2332 a1d54f5b58cfd3c91ba5b80ba73bd076 296 SUPERFAMILY SSF103481 213 295 9.68E-10 T 10-10-2018 VF_A0273 3a8afa6d1aa729e39d2eb7a401c47966 319 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 294 315 0.0022 T 10-10-2018 IPR020008 GlyGly-CTERM domain VF_A0273 3a8afa6d1aa729e39d2eb7a401c47966 319 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 222 233 - T 10-10-2018 IPR033116 Serine proteases, trypsin family, serine active site VF_A0273 3a8afa6d1aa729e39d2eb7a401c47966 319 Pfam PF00089 Trypsin 30 274 4.0E-39 T 10-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 VF_A0273 3a8afa6d1aa729e39d2eb7a401c47966 319 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 63 78 6.8E-14 T 10-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VF_A0273 3a8afa6d1aa729e39d2eb7a401c47966 319 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 221 233 6.8E-14 T 10-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VF_A0273 3a8afa6d1aa729e39d2eb7a401c47966 319 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 123 137 6.8E-14 T 10-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VF_A0273 3a8afa6d1aa729e39d2eb7a401c47966 319 Gene3D G3DSA:2.40.10.10 22 279 6.0E-50 T 10-10-2018 VF_A0273 3a8afa6d1aa729e39d2eb7a401c47966 319 SUPERFAMILY SSF50494 12 277 1.33E-53 T 10-10-2018 IPR009003 Peptidase S1, PA clan VF_A0273 3a8afa6d1aa729e39d2eb7a401c47966 319 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 73 78 - T 10-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 VF_A0273 3a8afa6d1aa729e39d2eb7a401c47966 319 SMART SM00020 29 274 9.6E-37 T 10-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 VF_2245 68980ce610769d06249ae60ec1e4281a 267 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 6 257 2.2E-72 T 10-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 VF_2245 68980ce610769d06249ae60ec1e4281a 267 Pfam PF02673 Bacitracin resistance protein BacA 6 257 1.4E-81 T 10-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 VF_2245 68980ce610769d06249ae60ec1e4281a 267 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 264 17.291 T 10-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 VF_A0377 97da2c993cc14bcf57e6897b4ae40b8f 350 Pfam PF13265 Protein of unknown function (DUF4056) 23 283 1.3E-117 T 10-10-2018 IPR025130 Protein of unknown function DUF4056 VF_1617 5ac5a30959ea65060dcbdc709ac13887 131 SUPERFAMILY SSF54523 8 98 1.26E-11 T 10-10-2018 VF_1617 5ac5a30959ea65060dcbdc709ac13887 131 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 28 1.6E-4 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_1617 5ac5a30959ea65060dcbdc709ac13887 131 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 27 2.0E-5 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_1617 5ac5a30959ea65060dcbdc709ac13887 131 Gene3D G3DSA:3.30.700.10 8 120 1.0E-11 T 10-10-2018 VF_0374 03e9b8c5014df145b109dcf4f5d2bdb6 163 Pfam PF04093 rod shape-determining protein MreD 9 155 5.4E-33 T 10-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 VF_0374 03e9b8c5014df145b109dcf4f5d2bdb6 163 PIRSF PIRSF018472 1 163 4.3E-45 T 10-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type VF_0374 03e9b8c5014df145b109dcf4f5d2bdb6 163 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 10 155 7.9E-35 T 10-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 VF_0071 042fbf592514b6964815408862c32f2e 96 Pfam PF12305 Protein of unknown function (DUF3630) 4 95 5.9E-36 T 10-10-2018 IPR022080 Protein of unknown function DUF3630 VF_A0853 cd9a589363e8466012abe9f06972eb70 374 Gene3D G3DSA:3.40.630.10 113 374 2.2E-69 T 10-10-2018 VF_A0853 cd9a589363e8466012abe9f06972eb70 374 Gene3D G3DSA:2.60.40.3120 1 112 8.8E-43 T 10-10-2018 VF_A0853 cd9a589363e8466012abe9f06972eb70 374 SUPERFAMILY SSF53187 106 371 5.62E-61 T 10-10-2018 VF_A0853 cd9a589363e8466012abe9f06972eb70 374 Pfam PF00246 Zinc carboxypeptidase 129 341 1.7E-22 T 10-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 VF_A0853 cd9a589363e8466012abe9f06972eb70 374 SMART SM00631 112 347 1.1E-4 T 10-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 VF_1866 1c7f787741408c6440759cae799b0c35 379 Gene3D G3DSA:1.20.1330.10 44 329 4.6E-79 T 10-10-2018 VF_1866 1c7f787741408c6440759cae799b0c35 379 Pfam PF07196 Flagellin hook IN motif 198 246 9.0E-10 T 10-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VF_1866 1c7f787741408c6440759cae799b0c35 379 SUPERFAMILY SSF64518 1 379 1.83E-97 T 10-10-2018 VF_1866 1c7f787741408c6440759cae799b0c35 379 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 1.6E-44 T 10-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VF_1866 1c7f787741408c6440759cae799b0c35 379 PRINTS PR00207 Flagellin signature 76 95 3.7E-27 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1866 1c7f787741408c6440759cae799b0c35 379 PRINTS PR00207 Flagellin signature 111 134 3.7E-27 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1866 1c7f787741408c6440759cae799b0c35 379 PRINTS PR00207 Flagellin signature 37 54 3.7E-27 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1866 1c7f787741408c6440759cae799b0c35 379 Gene3D G3DSA:3.30.70.2120 174 277 4.6E-79 T 10-10-2018 VF_1866 1c7f787741408c6440759cae799b0c35 379 Pfam PF00700 Bacterial flagellin C-terminal helical region 294 378 1.0E-25 T 10-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VF_1866 1c7f787741408c6440759cae799b0c35 379 Gene3D G3DSA:1.10.8.410 330 379 4.7E-21 T 10-10-2018 VF_A0365 c789e6d166c21d115cf2ecdb6b2587d7 115 SUPERFAMILY SSF55298 3 114 6.13E-24 T 10-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VF_A0365 c789e6d166c21d115cf2ecdb6b2587d7 115 Gene3D G3DSA:3.30.1330.40 1 115 6.5E-29 T 10-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VF_A0365 c789e6d166c21d115cf2ecdb6b2587d7 115 Pfam PF01042 Endoribonuclease L-PSP 32 113 3.9E-17 T 10-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 VF_A0163 3832387eb1a6fcd7d5ecfe4d98df6882 586 Pfam PF06276 Ferric iron reductase FhuF-like transporter 403 553 1.1E-27 T 10-10-2018 IPR022770 Ferric iron reductase FhuF domain VF_A0163 3832387eb1a6fcd7d5ecfe4d98df6882 586 Pfam PF04183 IucA / IucC family 137 381 6.7E-67 T 10-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 VF_A0163 3832387eb1a6fcd7d5ecfe4d98df6882 586 Gene3D G3DSA:1.10.510.40 371 575 3.6E-52 T 10-10-2018 VF_A0163 3832387eb1a6fcd7d5ecfe4d98df6882 586 Gene3D G3DSA:1.10.274.90 3 122 1.7E-19 T 10-10-2018 VF_1731 44fa60f095385d5c7cdd8e179730bb56 209 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 73 5.9E-15 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VF_1731 44fa60f095385d5c7cdd8e179730bb56 209 Gene3D G3DSA:1.20.1050.10 85 202 1.9E-8 T 10-10-2018 VF_1731 44fa60f095385d5c7cdd8e179730bb56 209 Pfam PF13410 Glutathione S-transferase, C-terminal domain 124 177 1.5E-7 T 10-10-2018 VF_1731 44fa60f095385d5c7cdd8e179730bb56 209 Gene3D G3DSA:3.40.30.10 1 76 2.9E-16 T 10-10-2018 VF_1731 44fa60f095385d5c7cdd8e179730bb56 209 SUPERFAMILY SSF52833 1 73 1.92E-16 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1731 44fa60f095385d5c7cdd8e179730bb56 209 SUPERFAMILY SSF47616 91 200 2.09E-17 T 10-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VF_2176 ad4538385573e5fbfe4c598abb626a68 176 Gene3D G3DSA:3.40.50.2020 1 176 4.4E-66 T 10-10-2018 VF_2176 ad4538385573e5fbfe4c598abb626a68 176 Pfam PF00156 Phosphoribosyl transferase domain 12 159 4.1E-27 T 10-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VF_2176 ad4538385573e5fbfe4c598abb626a68 176 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 172 1.0E-73 T 10-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 VF_2176 ad4538385573e5fbfe4c598abb626a68 176 SUPERFAMILY SSF53271 3 175 6.03E-56 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like VF_1600 6c50134312cc9f69d8aca8ab5e098ed6 461 Gene3D G3DSA:1.20.120.640 308 461 4.3E-51 T 10-10-2018 VF_1600 6c50134312cc9f69d8aca8ab5e098ed6 461 SUPERFAMILY SSF47323 318 460 4.58E-40 T 10-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_1600 6c50134312cc9f69d8aca8ab5e098ed6 461 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 460 2.8E-189 T 10-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 VF_1600 6c50134312cc9f69d8aca8ab5e098ed6 461 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 461 38.742 T 10-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 VF_1600 6c50134312cc9f69d8aca8ab5e098ed6 461 Gene3D G3DSA:3.40.50.620 1 307 2.7E-137 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_1600 6c50134312cc9f69d8aca8ab5e098ed6 461 SUPERFAMILY SSF52374 1 315 4.83E-100 T 10-10-2018 VF_1600 6c50134312cc9f69d8aca8ab5e098ed6 461 SMART SM00840 343 404 1.2E-27 T 10-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 VF_1600 6c50134312cc9f69d8aca8ab5e098ed6 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 1.5E-29 T 10-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 VF_1600 6c50134312cc9f69d8aca8ab5e098ed6 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 224 245 1.5E-29 T 10-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 VF_1600 6c50134312cc9f69d8aca8ab5e098ed6 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 1.5E-29 T 10-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 VF_1600 6c50134312cc9f69d8aca8ab5e098ed6 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 193 211 1.5E-29 T 10-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 VF_1600 6c50134312cc9f69d8aca8ab5e098ed6 461 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 315 1.1E-139 T 10-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 VF_1600 6c50134312cc9f69d8aca8ab5e098ed6 461 Pfam PF09190 DALR domain 343 404 6.6E-25 T 10-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 VF_0524 93ef7ad96d7eb8d89481f724bdf76a4e 320 Gene3D G3DSA:3.30.565.10 177 320 6.9E-27 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0524 93ef7ad96d7eb8d89481f724bdf76a4e 320 SMART SM00387 214 320 9.5E-19 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0524 93ef7ad96d7eb8d89481f724bdf76a4e 320 PRINTS PR00344 Bacterial sensor protein C-terminal signature 306 319 1.6E-8 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0524 93ef7ad96d7eb8d89481f724bdf76a4e 320 PRINTS PR00344 Bacterial sensor protein C-terminal signature 280 298 1.6E-8 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0524 93ef7ad96d7eb8d89481f724bdf76a4e 320 PRINTS PR00344 Bacterial sensor protein C-terminal signature 249 263 1.6E-8 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0524 93ef7ad96d7eb8d89481f724bdf76a4e 320 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 217 308 1.7E-13 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0524 93ef7ad96d7eb8d89481f724bdf76a4e 320 SUPERFAMILY SSF55874 181 319 1.01E-25 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0564 b26ead13627b5e20ed6097a62c3f2dc6 324 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 10-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0564 b26ead13627b5e20ed6097a62c3f2dc6 324 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 14 313 1.0E-103 T 10-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0564 b26ead13627b5e20ed6097a62c3f2dc6 324 Pfam PF01479 S4 domain 18 65 6.7E-6 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0564 b26ead13627b5e20ed6097a62c3f2dc6 324 Gene3D G3DSA:3.10.290.10 2 76 1.7E-23 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VF_0564 b26ead13627b5e20ed6097a62c3f2dc6 324 SUPERFAMILY SSF55174 17 69 2.35E-9 T 10-10-2018 VF_0564 b26ead13627b5e20ed6097a62c3f2dc6 324 SMART SM00363 18 83 8.1E-6 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0564 b26ead13627b5e20ed6097a62c3f2dc6 324 SUPERFAMILY SSF55120 76 315 6.58E-80 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0564 b26ead13627b5e20ed6097a62c3f2dc6 324 Gene3D G3DSA:3.30.2350.10 85 316 1.1E-72 T 10-10-2018 VF_0564 b26ead13627b5e20ed6097a62c3f2dc6 324 Pfam PF00849 RNA pseudouridylate synthase 92 241 3.4E-31 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_A0366 d31e5d3f9d9f1b903ecc2f334c83812f 438 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 10 415 2.8E-102 T 10-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 VF_A0366 d31e5d3f9d9f1b903ecc2f334c83812f 438 Pfam PF05525 Branched-chain amino acid transport protein 4 427 2.8E-114 T 10-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 VF_1450 aa913fd4d18b65dcf55175707e0c3d91 285 Gene3D G3DSA:3.30.1490.70 36 195 1.4E-52 T 10-10-2018 VF_1450 aa913fd4d18b65dcf55175707e0c3d91 285 Gene3D G3DSA:2.40.50.140 203 285 1.0E-6 T 10-10-2018 VF_1450 aa913fd4d18b65dcf55175707e0c3d91 285 Pfam PF14743 DNA ligase OB-like domain 218 282 6.5E-27 T 10-10-2018 IPR029319 DNA ligase, OB-like domain VF_1450 aa913fd4d18b65dcf55175707e0c3d91 285 SUPERFAMILY SSF56091 38 203 1.66E-37 T 10-10-2018 VF_1450 aa913fd4d18b65dcf55175707e0c3d91 285 Gene3D G3DSA:3.30.470.30 56 156 1.4E-52 T 10-10-2018 VF_1450 aa913fd4d18b65dcf55175707e0c3d91 285 SUPERFAMILY SSF50249 177 282 1.31E-29 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1450 aa913fd4d18b65dcf55175707e0c3d91 285 Pfam PF01068 ATP dependent DNA ligase domain 100 203 1.9E-7 T 10-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 VF_0050 14cd241e81987a812b5f8570d557a1bb 126 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 5.9E-28 T 10-10-2018 VF_0050 14cd241e81987a812b5f8570d557a1bb 126 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 5.9E-28 T 10-10-2018 VF_0050 14cd241e81987a812b5f8570d557a1bb 126 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 5.9E-28 T 10-10-2018 VF_0050 14cd241e81987a812b5f8570d557a1bb 126 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 126 18.386 T 10-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 VF_0050 14cd241e81987a812b5f8570d557a1bb 126 Pfam PF02416 mttA/Hcf106 family 4 49 2.9E-5 T 10-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 VF_0050 14cd241e81987a812b5f8570d557a1bb 126 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 81 4.3E-33 T 10-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 VF_2374 439fbf991c32374c49b5fe1096d48014 209 SUPERFAMILY SSF52172 4 132 4.55E-25 T 10-10-2018 IPR011006 CheY-like superfamily VF_2374 439fbf991c32374c49b5fe1096d48014 209 Gene3D G3DSA:3.40.50.2300 4 132 4.2E-26 T 10-10-2018 VF_2374 439fbf991c32374c49b5fe1096d48014 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 203 2.8E-19 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_2374 439fbf991c32374c49b5fe1096d48014 209 Gene3D G3DSA:1.10.10.10 148 209 3.3E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2374 439fbf991c32374c49b5fe1096d48014 209 SUPERFAMILY SSF46894 142 206 4.42E-19 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_2374 439fbf991c32374c49b5fe1096d48014 209 Pfam PF00072 Response regulator receiver domain 7 119 4.3E-22 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_2374 439fbf991c32374c49b5fe1096d48014 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 1.4E-10 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_2374 439fbf991c32374c49b5fe1096d48014 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 1.4E-10 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_2374 439fbf991c32374c49b5fe1096d48014 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 1.4E-10 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_2374 439fbf991c32374c49b5fe1096d48014 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_2374 439fbf991c32374c49b5fe1096d48014 209 SMART SM00448 5 119 1.5E-19 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_2374 439fbf991c32374c49b5fe1096d48014 209 SMART SM00421 147 204 5.7E-22 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_0076 0dd2e456d68fb52084f337b2d2e5de5b 205 Gene3D G3DSA:1.10.760.10 109 205 8.3E-26 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_0076 0dd2e456d68fb52084f337b2d2e5de5b 205 SUPERFAMILY SSF46626 5 105 2.47E-20 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_0076 0dd2e456d68fb52084f337b2d2e5de5b 205 PIRSF PIRSF000005 1 205 1.4E-64 T 10-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 VF_0076 0dd2e456d68fb52084f337b2d2e5de5b 205 Pfam PF00034 Cytochrome c 23 104 1.2E-9 T 10-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_0076 0dd2e456d68fb52084f337b2d2e5de5b 205 Pfam PF00034 Cytochrome c 118 201 3.6E-8 T 10-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_0076 0dd2e456d68fb52084f337b2d2e5de5b 205 SUPERFAMILY SSF46626 116 203 1.18E-19 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_0076 0dd2e456d68fb52084f337b2d2e5de5b 205 Gene3D G3DSA:1.10.760.10 19 108 3.2E-24 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_1359 c010258a1d5338bef9c5b2bd2f1c15c5 202 Gene3D G3DSA:3.30.70.20 5 181 3.3E-32 T 10-10-2018 VF_1359 c010258a1d5338bef9c5b2bd2f1c15c5 202 Gene3D G3DSA:3.30.70.20 63 120 3.3E-32 T 10-10-2018 VF_1359 c010258a1d5338bef9c5b2bd2f1c15c5 202 Pfam PF12838 4Fe-4S dicluster domain 89 162 1.7E-8 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_1359 c010258a1d5338bef9c5b2bd2f1c15c5 202 SUPERFAMILY SSF54862 1 183 2.83E-47 T 10-10-2018 VF_1359 c010258a1d5338bef9c5b2bd2f1c15c5 202 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_2355 dad32c0b24e77afdb0a100fd78bf9188 141 Pfam PF00582 Universal stress protein family 3 138 4.2E-17 T 10-10-2018 IPR006016 UspA VF_2355 dad32c0b24e77afdb0a100fd78bf9188 141 PIRSF PIRSF006276 1 141 5.1E-47 T 10-10-2018 IPR006015 Universal stress protein A VF_2355 dad32c0b24e77afdb0a100fd78bf9188 141 Gene3D G3DSA:3.40.50.620 2 141 2.6E-35 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_2355 dad32c0b24e77afdb0a100fd78bf9188 141 SUPERFAMILY SSF52402 3 139 6.53E-26 T 10-10-2018 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 Gene3D G3DSA:3.30.70.870 410 485 1.2E-31 T 10-10-2018 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 Gene3D G3DSA:3.30.70.240 609 680 1.0E-88 T 10-10-2018 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 Pfam PF14492 Elongation Factor G, domain II 409 483 4.4E-33 T 10-10-2018 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 Pfam PF00009 Elongation factor Tu GTP binding domain 9 287 2.8E-67 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 697 0.0 T 10-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 PRINTS PR00315 GTP-binding elongation factor signature 101 112 2.8E-17 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 PRINTS PR00315 GTP-binding elongation factor signature 12 25 2.8E-17 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 PRINTS PR00315 GTP-binding elongation factor signature 85 95 2.8E-17 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.8E-17 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 PRINTS PR00315 GTP-binding elongation factor signature 137 146 2.8E-17 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 Gene3D G3DSA:3.40.50.300 1 298 1.1E-116 T 10-10-2018 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 Pfam PF03144 Elongation factor Tu domain 2 329 396 5.4E-16 T 10-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 Hamap MF_00054_B Elongation factor G [fusA]. 6 697 112.403 T 10-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 SUPERFAMILY SSF54211 484 604 2.23E-45 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 SMART SM00889 485 603 6.5E-73 T 10-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 SUPERFAMILY SSF50447 271 409 3.31E-34 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 5.5E-35 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 SUPERFAMILY SSF54980 608 695 1.39E-29 T 10-10-2018 IPR035647 EF-G domain III/V-like VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 10-10-2018 IPR031157 Tr-type G domain, conserved site VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 Pfam PF03764 Elongation factor G, domain IV 484 603 1.1E-46 T 10-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 Gene3D G3DSA:2.40.30.10 299 405 1.8E-46 T 10-10-2018 VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 Pfam PF00679 Elongation factor G C-terminus 605 692 2.9E-30 T 10-10-2018 IPR000640 Elongation factor EFG, domain V-like VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 Gene3D G3DSA:3.30.230.10 489 693 1.0E-88 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 SMART SM00838 605 693 3.4E-55 T 10-10-2018 IPR000640 Elongation factor EFG, domain V-like VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 SUPERFAMILY SSF52540 6 287 6.47E-107 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0232 8d25f19bacc71bb505f4aa09f6cb7efb 698 SUPERFAMILY SSF54980 407 485 2.23E-24 T 10-10-2018 IPR035647 EF-G domain III/V-like VF_A0883 6a9c8f6c6429175581ef4e7f93e54456 764 Pfam PF03170 Bacterial cellulose synthase subunit 51 664 7.4E-214 T 10-10-2018 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 VF_A0883 6a9c8f6c6429175581ef4e7f93e54456 764 Gene3D G3DSA:2.60.120.260 55 181 2.2E-23 T 10-10-2018 IPR008979 Galactose-binding-like domain superfamily VF_A0883 6a9c8f6c6429175581ef4e7f93e54456 764 Gene3D G3DSA:2.60.120.260 340 500 8.2E-27 T 10-10-2018 IPR008979 Galactose-binding-like domain superfamily VF_A0883 6a9c8f6c6429175581ef4e7f93e54456 764 PRINTS PR01440 Cellulose synthase subunit B signature 545 565 2.0E-37 T 10-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VF_A0883 6a9c8f6c6429175581ef4e7f93e54456 764 PRINTS PR01440 Cellulose synthase subunit B signature 374 395 2.0E-37 T 10-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VF_A0883 6a9c8f6c6429175581ef4e7f93e54456 764 PRINTS PR01440 Cellulose synthase subunit B signature 291 312 2.0E-37 T 10-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VF_A0883 6a9c8f6c6429175581ef4e7f93e54456 764 PRINTS PR01440 Cellulose synthase subunit B signature 127 150 2.0E-37 T 10-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VF_A0883 6a9c8f6c6429175581ef4e7f93e54456 764 PRINTS PR01440 Cellulose synthase subunit B signature 210 233 2.0E-37 T 10-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VF_A0883 6a9c8f6c6429175581ef4e7f93e54456 764 PRINTS PR01440 Cellulose synthase subunit B signature 168 189 2.0E-37 T 10-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VF_A0883 6a9c8f6c6429175581ef4e7f93e54456 764 PRINTS PR01440 Cellulose synthase subunit B signature 508 527 2.0E-37 T 10-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VF_A0883 6a9c8f6c6429175581ef4e7f93e54456 764 PRINTS PR01440 Cellulose synthase subunit B signature 78 99 2.0E-37 T 10-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 VF_0604 47c6b175cf9ac51e12d0131bf0c5cfc4 101 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 94 7.1E-25 T 10-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VF_0604 47c6b175cf9ac51e12d0131bf0c5cfc4 101 Gene3D G3DSA:3.40.50.2300 1 101 5.0E-39 T 10-10-2018 VF_0604 47c6b175cf9ac51e12d0131bf0c5cfc4 101 SUPERFAMILY SSF52794 1 100 3.01E-36 T 10-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VF_1415 cf32da80e0718716028ff2b0c8079283 460 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 421 8.3E-118 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_1415 cf32da80e0718716028ff2b0c8079283 460 PIRSF PIRSF006603 4 455 5.3E-59 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_1415 cf32da80e0718716028ff2b0c8079283 460 Pfam PF01554 MatE 17 176 4.9E-35 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_1415 cf32da80e0718716028ff2b0c8079283 460 Pfam PF01554 MatE 243 404 3.2E-37 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_0855 dc178e953ac67fc3d7c01921021ecb28 631 Gene3D G3DSA:1.20.1640.10 431 611 3.5E-6 T 10-10-2018 VF_0855 dc178e953ac67fc3d7c01921021ecb28 631 Pfam PF03176 MMPL family 72 262 2.1E-9 T 10-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 VF_0855 dc178e953ac67fc3d7c01921021ecb28 631 Pfam PF03176 MMPL family 518 608 2.3E-5 T 10-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 VF_0855 dc178e953ac67fc3d7c01921021ecb28 631 SUPERFAMILY SSF82866 34 246 2.49E-18 T 10-10-2018 VF_0855 dc178e953ac67fc3d7c01921021ecb28 631 SUPERFAMILY SSF82866 432 608 2.35E-23 T 10-10-2018 VF_A0300 2c1962da952d2b636f8f5f5fcd243985 661 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 466 626 5.0E-42 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0300 2c1962da952d2b636f8f5f5fcd243985 661 SMART SM00283 399 660 1.0E-59 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0300 2c1962da952d2b636f8f5f5fcd243985 661 SUPERFAMILY SSF58104 359 660 4.84E-64 T 10-10-2018 VF_A0300 2c1962da952d2b636f8f5f5fcd243985 661 Gene3D G3DSA:1.10.287.950 332 661 2.1E-65 T 10-10-2018 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 Gene3D G3DSA:1.10.287.990 37 107 1.8E-94 T 10-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 Gene3D G3DSA:3.50.50.60 147 273 1.8E-94 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PIRSF PIRSF000350 1 471 2.7E-59 T 10-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 SUPERFAMILY SSF55424 354 471 2.75E-24 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 Gene3D G3DSA:3.50.50.60 7 334 1.8E-94 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 355 463 9.0E-17 T 10-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 7.0E-19 T 10-10-2018 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 174 192 7.0E-19 T 10-10-2018 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 282 7.0E-19 T 10-10-2018 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 296 318 7.0E-19 T 10-10-2018 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 135 153 7.0E-19 T 10-10-2018 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 SUPERFAMILY SSF51905 1 370 8.82E-41 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 331 8.3E-40 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 Gene3D G3DSA:3.30.390.30 351 474 1.8E-41 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 416 431 5.2E-40 T 10-10-2018 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 348 369 5.2E-40 T 10-10-2018 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 138 147 5.2E-40 T 10-10-2018 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 267 281 5.2E-40 T 10-10-2018 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 311 318 5.2E-40 T 10-10-2018 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 174 199 5.2E-40 T 10-10-2018 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 5.2E-40 T 10-10-2018 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 5.2E-40 T 10-10-2018 VF_2301 cf8ec3f084f1c117bfd3e9178221d9e0 488 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 438 458 5.2E-40 T 10-10-2018 VF_A0379 d2f50a0fc4722d6724b2bb0291c7f1e4 376 SUPERFAMILY SSF111369 63 182 2.22E-9 T 10-10-2018 VF_A0379 d2f50a0fc4722d6724b2bb0291c7f1e4 376 Gene3D G3DSA:2.40.50.100 63 256 2.2E-35 T 10-10-2018 VF_A0379 d2f50a0fc4722d6724b2bb0291c7f1e4 376 SUPERFAMILY SSF111369 173 276 6.41E-6 T 10-10-2018 VF_A0379 d2f50a0fc4722d6724b2bb0291c7f1e4 376 Gene3D G3DSA:2.40.30.170 257 301 2.2E-35 T 10-10-2018 VF_A0379 d2f50a0fc4722d6724b2bb0291c7f1e4 376 Gene3D G3DSA:1.10.287.470 96 219 2.2E-35 T 10-10-2018 VF_A0379 d2f50a0fc4722d6724b2bb0291c7f1e4 376 Pfam PF13533 Biotin-lipoyl like 64 108 2.8E-9 T 10-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VF_A0850 a3a6fd4ffc8373820f08d968a4a1b32f 283 SUPERFAMILY SSF103481 38 135 1.96E-8 T 10-10-2018 VF_A0850 a3a6fd4ffc8373820f08d968a4a1b32f 283 Pfam PF00892 EamA-like transporter family 3 134 4.9E-9 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_A0850 a3a6fd4ffc8373820f08d968a4a1b32f 283 SUPERFAMILY SSF103481 180 272 1.57E-9 T 10-10-2018 VF_2362 c8f12fd99c334c95c90c21041cf1fa54 331 SMART SM00267 162 330 1.0E-30 T 10-10-2018 IPR000160 GGDEF domain VF_2362 c8f12fd99c334c95c90c21041cf1fa54 331 Gene3D G3DSA:3.30.70.270 170 331 4.1E-38 T 10-10-2018 VF_2362 c8f12fd99c334c95c90c21041cf1fa54 331 Pfam PF00990 Diguanylate cyclase, GGDEF domain 174 328 2.0E-35 T 10-10-2018 IPR000160 GGDEF domain VF_2362 c8f12fd99c334c95c90c21041cf1fa54 331 Pfam PF13185 GAF domain 30 157 4.6E-10 T 10-10-2018 IPR003018 GAF domain GO:0005515 VF_2362 c8f12fd99c334c95c90c21041cf1fa54 331 Gene3D G3DSA:3.30.450.40 26 169 6.2E-14 T 10-10-2018 IPR029016 GAF-like domain superfamily VF_2362 c8f12fd99c334c95c90c21041cf1fa54 331 SUPERFAMILY SSF55781 28 171 1.61E-19 T 10-10-2018 VF_2362 c8f12fd99c334c95c90c21041cf1fa54 331 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 173 328 3.2E-37 T 10-10-2018 IPR000160 GGDEF domain VF_2362 c8f12fd99c334c95c90c21041cf1fa54 331 SMART SM00065 24 171 4.1E-9 T 10-10-2018 IPR003018 GAF domain GO:0005515 VF_2362 c8f12fd99c334c95c90c21041cf1fa54 331 SUPERFAMILY SSF55073 180 327 5.49E-33 T 10-10-2018 IPR029787 Nucleotide cyclase VF_1471 14fa37b10ab312458e58f7a8353863bc 523 Gene3D G3DSA:1.25.40.80 135 332 9.7E-94 T 10-10-2018 VF_1471 14fa37b10ab312458e58f7a8353863bc 523 Gene3D G3DSA:3.40.50.620 10 233 9.7E-94 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_1471 14fa37b10ab312458e58f7a8353863bc 523 SUPERFAMILY SSF48173 232 507 2.09E-58 T 10-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 VF_1471 14fa37b10ab312458e58f7a8353863bc 523 Gene3D G3DSA:1.10.10.1710 457 522 6.1E-24 T 10-10-2018 VF_1471 14fa37b10ab312458e58f7a8353863bc 523 Pfam PF04244 Deoxyribodipyrimidine photo-lyase-related protein 9 227 4.7E-67 T 10-10-2018 IPR007357 Deoxyribodipyrimidine photolyase-related protein VF_1471 14fa37b10ab312458e58f7a8353863bc 523 Gene3D G3DSA:1.10.579.10 336 456 3.3E-54 T 10-10-2018 VF_2298 8abe2c18c9f7cf8796e13830d1160c31 832 Pfam PF00905 Penicillin binding protein transpeptidase domain 438 718 7.7E-28 T 10-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 VF_2298 8abe2c18c9f7cf8796e13830d1160c31 832 Gene3D G3DSA:1.10.3810.10 48 245 2.9E-77 T 10-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2298 8abe2c18c9f7cf8796e13830d1160c31 832 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 726 1.7E-166 T 10-10-2018 VF_2298 8abe2c18c9f7cf8796e13830d1160c31 832 SUPERFAMILY SSF53955 43 254 2.22E-77 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_2298 8abe2c18c9f7cf8796e13830d1160c31 832 Gene3D G3DSA:2.40.50.140 316 418 7.5E-29 T 10-10-2018 VF_2298 8abe2c18c9f7cf8796e13830d1160c31 832 Pfam PF17092 Penicillin-binding protein OB-like domain 317 435 1.2E-30 T 10-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2298 8abe2c18c9f7cf8796e13830d1160c31 832 Gene3D G3DSA:3.40.710.10 419 799 7.1E-94 T 10-10-2018 VF_2298 8abe2c18c9f7cf8796e13830d1160c31 832 Pfam PF00912 Transglycosylase 55 229 7.0E-63 T 10-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2298 8abe2c18c9f7cf8796e13830d1160c31 832 SUPERFAMILY SSF56601 211 811 1.21E-113 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VF_2251 464e3bc33abf81bdd306aaaab4981c0f 147 Pfam PF09424 Yqey-like protein 5 146 1.6E-56 T 10-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 VF_2251 464e3bc33abf81bdd306aaaab4981c0f 147 Gene3D G3DSA:1.10.1510.10 1 90 5.1E-29 T 10-10-2018 VF_2251 464e3bc33abf81bdd306aaaab4981c0f 147 SUPERFAMILY SSF89095 1 146 1.88E-45 T 10-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 VF_2251 464e3bc33abf81bdd306aaaab4981c0f 147 Gene3D G3DSA:1.10.10.410 91 147 2.1E-20 T 10-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal VF_A0578 2d28646e49d27c3c1a199a6ac2d1e6ca 401 ProDom PD137744 ORFU VC1460 291 384 8.0E-49 T 10-10-2018 VF_A0187 ad111f2fc8a275c45f671f2fcadbebeb 213 Gene3D G3DSA:3.30.1330.60 55 213 1.2E-36 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A0187 ad111f2fc8a275c45f671f2fcadbebeb 213 SUPERFAMILY SSF103088 89 210 3.66E-26 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A0187 ad111f2fc8a275c45f671f2fcadbebeb 213 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 12 49 1.5E-13 T 10-10-2018 IPR025713 Motility protein B, N-terminal domain VF_A0187 ad111f2fc8a275c45f671f2fcadbebeb 213 Pfam PF00691 OmpA family 102 199 5.3E-19 T 10-10-2018 IPR006665 OmpA-like domain VF_A0863 57074c9be2415e75a37e5929ee06bc6c 553 Gene3D G3DSA:3.40.50.2030 237 382 2.0E-63 T 10-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 VF_A0863 57074c9be2415e75a37e5929ee06bc6c 553 Pfam PF03063 Prismane/CO dehydrogenase family 1 548 5.8E-163 T 10-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 VF_A0863 57074c9be2415e75a37e5929ee06bc6c 553 PIRSF PIRSF000076 1 553 3.4E-241 T 10-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 VF_A0863 57074c9be2415e75a37e5929ee06bc6c 553 Gene3D G3DSA:1.20.1270.20 153 235 1.3E-27 T 10-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 VF_A0863 57074c9be2415e75a37e5929ee06bc6c 553 Gene3D G3DSA:3.40.50.2030 383 551 6.2E-59 T 10-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 VF_A0863 57074c9be2415e75a37e5929ee06bc6c 553 Gene3D G3DSA:1.20.1270.20 1 142 8.8E-37 T 10-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 VF_A0863 57074c9be2415e75a37e5929ee06bc6c 553 SUPERFAMILY SSF56821 1 551 2.75E-193 T 10-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 VF_A0863 57074c9be2415e75a37e5929ee06bc6c 553 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 551 1.9E-226 T 10-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 VF_A0863 57074c9be2415e75a37e5929ee06bc6c 553 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 552 20.224 T 10-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 VF_A1014 597c02671f34a5704ded3c81d42a74b2 526 Pfam PF00563 EAL domain 270 503 4.2E-69 T 10-10-2018 IPR001633 EAL domain VF_A1014 597c02671f34a5704ded3c81d42a74b2 526 Gene3D G3DSA:3.30.70.270 99 266 5.7E-8 T 10-10-2018 VF_A1014 597c02671f34a5704ded3c81d42a74b2 526 Pfam PF00990 Diguanylate cyclase, GGDEF domain 126 247 5.0E-6 T 10-10-2018 IPR000160 GGDEF domain VF_A1014 597c02671f34a5704ded3c81d42a74b2 526 SUPERFAMILY SSF141868 269 515 5.1E-82 T 10-10-2018 IPR035919 EAL domain superfamily VF_A1014 597c02671f34a5704ded3c81d42a74b2 526 SMART SM00052 263 508 4.9E-84 T 10-10-2018 IPR001633 EAL domain VF_A1014 597c02671f34a5704ded3c81d42a74b2 526 SUPERFAMILY SSF55073 118 247 7.85E-8 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A1014 597c02671f34a5704ded3c81d42a74b2 526 Gene3D G3DSA:3.20.20.450 267 522 1.7E-83 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0752 247e44a641405d091448c8315ac9e216 314 Pfam PF08349 Protein of unknown function (DUF1722) 189 305 3.7E-42 T 10-10-2018 IPR013560 Domain of unknown function DUF1722 VF_A0752 247e44a641405d091448c8315ac9e216 314 Pfam PF04463 Protein of unknown function (DUF523) 5 146 5.6E-36 T 10-10-2018 IPR007553 Domain of unknown function DUF523 VF_A0752 247e44a641405d091448c8315ac9e216 314 PIRSF PIRSF037004 1 314 5.0E-128 T 10-10-2018 IPR017087 Uncharacterised conserved protein UCP037004 VF_0382 8c3b6805bef3dc2f2e0e1f7ff48af018 451 Pfam PF01769 Divalent cation transporter 323 444 5.5E-23 T 10-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 VF_0382 8c3b6805bef3dc2f2e0e1f7ff48af018 451 Gene3D G3DSA:1.25.60.10 8 134 8.1E-19 T 10-10-2018 IPR038076 MgtE, N-terminal domain superfamily VF_0382 8c3b6805bef3dc2f2e0e1f7ff48af018 451 Pfam PF03448 MgtE intracellular N domain 36 137 7.2E-26 T 10-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain VF_0382 8c3b6805bef3dc2f2e0e1f7ff48af018 451 Gene3D G3DSA:1.10.357.20 277 451 2.1E-43 T 10-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain VF_0382 8c3b6805bef3dc2f2e0e1f7ff48af018 451 SUPERFAMILY SSF54631 138 278 9.98E-29 T 10-10-2018 VF_0382 8c3b6805bef3dc2f2e0e1f7ff48af018 451 SMART SM00924 36 139 5.3E-37 T 10-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain VF_0382 8c3b6805bef3dc2f2e0e1f7ff48af018 451 Gene3D G3DSA:3.10.580.10 135 262 6.5E-37 T 10-10-2018 VF_0382 8c3b6805bef3dc2f2e0e1f7ff48af018 451 SUPERFAMILY SSF161093 280 450 1.96E-42 T 10-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 VF_0382 8c3b6805bef3dc2f2e0e1f7ff48af018 451 SUPERFAMILY SSF158791 11 136 9.68E-30 T 10-10-2018 VF_0382 8c3b6805bef3dc2f2e0e1f7ff48af018 451 Pfam PF00571 CBS domain 140 198 1.5E-4 T 10-10-2018 IPR000644 CBS domain VF_0382 8c3b6805bef3dc2f2e0e1f7ff48af018 451 Pfam PF00571 CBS domain 203 257 5.2E-4 T 10-10-2018 IPR000644 CBS domain VF_0382 8c3b6805bef3dc2f2e0e1f7ff48af018 451 TIGRFAM TIGR00400 mgtE: magnesium transporter 20 450 6.3E-88 T 10-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 VF_0935 7c9fa6fc2a0f0915c299da534f3ad0cf 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 9.3E-90 T 10-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 VF_0935 7c9fa6fc2a0f0915c299da534f3ad0cf 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 7.4E-62 T 10-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VF_0935 7c9fa6fc2a0f0915c299da534f3ad0cf 193 PIRSF PIRSF006102 1 193 4.1E-63 T 10-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VF_0935 7c9fa6fc2a0f0915c299da534f3ad0cf 193 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 2 191 26.297 T 10-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 VF_A1109 44c40c7c7d2855a38107fd0a492828bc 300 Gene3D G3DSA:3.40.190.10 168 269 7.8E-60 T 10-10-2018 VF_A1109 44c40c7c7d2855a38107fd0a492828bc 300 Gene3D G3DSA:3.40.190.10 95 295 7.8E-60 T 10-10-2018 VF_A1109 44c40c7c7d2855a38107fd0a492828bc 300 Gene3D G3DSA:1.10.10.10 8 93 5.4E-25 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1109 44c40c7c7d2855a38107fd0a492828bc 300 Pfam PF03466 LysR substrate binding domain 92 298 8.3E-39 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A1109 44c40c7c7d2855a38107fd0a492828bc 300 SUPERFAMILY SSF46785 9 91 5.12E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A1109 44c40c7c7d2855a38107fd0a492828bc 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 4.2E-16 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1109 44c40c7c7d2855a38107fd0a492828bc 300 SUPERFAMILY SSF53850 93 299 6.15E-44 T 10-10-2018 VF_A1192 648683573728f9343f21c206524623d7 350 Gene3D G3DSA:3.40.50.410 100 299 6.5E-51 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_A1192 648683573728f9343f21c206524623d7 350 Pfam PF00092 von Willebrand factor type A domain 102 289 3.5E-25 T 10-10-2018 IPR002035 von Willebrand factor, type A VF_A1192 648683573728f9343f21c206524623d7 350 SUPERFAMILY SSF53300 98 295 6.68E-34 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_A1192 648683573728f9343f21c206524623d7 350 SMART SM00327 100 299 2.8E-22 T 10-10-2018 IPR002035 von Willebrand factor, type A VF_1716 de2c9b47066ec60de0e39570bc0948fe 271 SUPERFAMILY SSF51182 20 97 1.11E-11 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_1716 de2c9b47066ec60de0e39570bc0948fe 271 SUPERFAMILY SSF46689 220 267 2.55E-11 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1716 de2c9b47066ec60de0e39570bc0948fe 271 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 249 265 3.8E-7 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_1716 de2c9b47066ec60de0e39570bc0948fe 271 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 234 249 3.8E-7 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_1716 de2c9b47066ec60de0e39570bc0948fe 271 SMART SM00342 183 265 3.0E-24 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_1716 de2c9b47066ec60de0e39570bc0948fe 271 Gene3D G3DSA:2.60.120.10 6 103 8.1E-8 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_1716 de2c9b47066ec60de0e39570bc0948fe 271 Gene3D G3DSA:1.10.10.60 164 271 9.1E-25 T 10-10-2018 VF_1716 de2c9b47066ec60de0e39570bc0948fe 271 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 218 261 - T 10-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VF_1716 de2c9b47066ec60de0e39570bc0948fe 271 SUPERFAMILY SSF46689 166 217 2.11E-5 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1716 de2c9b47066ec60de0e39570bc0948fe 271 Pfam PF12833 Helix-turn-helix domain 189 266 2.3E-21 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0557 1f6c3d5f7c3a4d3cb01858fca8ff43a8 570 SUPERFAMILY SSF53850 120 566 1.99E-55 T 10-10-2018 VF_A0557 1f6c3d5f7c3a4d3cb01858fca8ff43a8 570 Gene3D G3DSA:3.40.190.10 129 314 1.3E-33 T 10-10-2018 VF_A0557 1f6c3d5f7c3a4d3cb01858fca8ff43a8 570 Pfam PF12793 Sugar transport-related sRNA regulator N-term 5 118 4.5E-35 T 10-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain VF_A0557 1f6c3d5f7c3a4d3cb01858fca8ff43a8 570 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 164 306 8.7E-23 T 10-10-2018 IPR000914 Solute-binding protein family 5 domain VF_A0531 535b7f4ca39406b029bff909cfb1e59a 227 Gene3D G3DSA:2.60.120.10 14 144 1.7E-14 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_A0531 535b7f4ca39406b029bff909cfb1e59a 227 SUPERFAMILY SSF51206 14 143 4.45E-19 T 10-10-2018 IPR018490 Cyclic nucleotide-binding-like VF_A0531 535b7f4ca39406b029bff909cfb1e59a 227 Pfam PF00027 Cyclic nucleotide-binding domain 39 107 3.5E-10 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain VF_0586 95e50af56a98ace2d047a74f2638e832 127 Pfam PF11012 Protein of unknown function (DUF2850) 48 126 3.4E-31 T 10-10-2018 IPR021271 Protein of unknown function DUF2850 VF_A0917 8ad6425fc86b9f24e246c335eba8f77b 147 PIRSF PIRSF006019 1 147 2.3E-45 T 10-10-2018 IPR016473 Deoxycytidylate deaminase GO:0004132|GO:0006220|GO:0008270 KEGG: 00240+3.5.4.12|MetaCyc: PWY-7210|Reactome: R-HSA-499943 VF_A0917 8ad6425fc86b9f24e246c335eba8f77b 147 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 4 109 4.0E-26 T 10-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain VF_A0917 8ad6425fc86b9f24e246c335eba8f77b 147 Gene3D G3DSA:3.40.140.10 2 144 6.4E-41 T 10-10-2018 VF_A0917 8ad6425fc86b9f24e246c335eba8f77b 147 SUPERFAMILY SSF53927 8 141 1.12E-31 T 10-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VF_A0917 8ad6425fc86b9f24e246c335eba8f77b 147 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 67 99 - T 10-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 VF_1416 5655c594e14b800a40be5cd6018c7d3f 334 SMART SM00028 158 191 110.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1416 5655c594e14b800a40be5cd6018c7d3f 334 SMART SM00028 192 225 55.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1416 5655c594e14b800a40be5cd6018c7d3f 334 SMART SM00028 226 259 11.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1416 5655c594e14b800a40be5cd6018c7d3f 334 SUPERFAMILY SSF48452 160 324 6.75E-17 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1416 5655c594e14b800a40be5cd6018c7d3f 334 Gene3D G3DSA:1.25.40.10 130 291 1.1E-17 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1416 5655c594e14b800a40be5cd6018c7d3f 334 SUPERFAMILY SSF48371 47 128 2.04E-5 T 10-10-2018 IPR016024 Armadillo-type fold VF_0618 93eab4a6d67e3a69f922b816abce5d56 127 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 2.9E-68 T 10-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 VF_0618 93eab4a6d67e3a69f922b816abce5d56 127 Gene3D G3DSA:3.90.1010.10 1 127 3.8E-58 T 10-10-2018 VF_0618 93eab4a6d67e3a69f922b816abce5d56 127 Pfam PF01592 NifU-like N terminal domain 2 125 7.1E-56 T 10-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 VF_0618 93eab4a6d67e3a69f922b816abce5d56 127 SUPERFAMILY SSF82649 1 125 1.07E-48 T 10-10-2018 VF_1739 05e321eb1959a80ebe1d174639083eb8 77 Pfam PF00550 Phosphopantetheine attachment site 6 73 2.2E-16 T 10-10-2018 IPR009081 Phosphopantetheine binding ACP domain VF_1739 05e321eb1959a80ebe1d174639083eb8 77 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.728 T 10-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 VF_1739 05e321eb1959a80ebe1d174639083eb8 77 SUPERFAMILY SSF47336 2 76 2.22E-23 T 10-10-2018 IPR036736 ACP-like superfamily VF_1739 05e321eb1959a80ebe1d174639083eb8 77 Gene3D G3DSA:1.10.1200.10 1 76 1.2E-29 T 10-10-2018 IPR036736 ACP-like superfamily VF_1739 05e321eb1959a80ebe1d174639083eb8 77 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 10-10-2018 IPR006162 Phosphopantetheine attachment site VF_1739 05e321eb1959a80ebe1d174639083eb8 77 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 76 2.4E-36 T 10-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 VF_0144 8f69ee0e59e6b45d84d670a2f855bb88 214 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 172 200 - T 10-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VF_0144 8f69ee0e59e6b45d84d670a2f855bb88 214 Gene3D G3DSA:3.40.50.20 1 92 1.2E-12 T 10-10-2018 VF_0144 8f69ee0e59e6b45d84d670a2f855bb88 214 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 127 160 8.4E-5 T 10-10-2018 IPR001451 Hexapeptide repeat VF_0144 8f69ee0e59e6b45d84d670a2f855bb88 214 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 164 198 2.8E-5 T 10-10-2018 IPR001451 Hexapeptide repeat VF_0144 8f69ee0e59e6b45d84d670a2f855bb88 214 SUPERFAMILY SSF51161 6 208 6.65E-39 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_0144 8f69ee0e59e6b45d84d670a2f855bb88 214 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 9 207 1.6E-61 T 10-10-2018 IPR020019 Sialic acid O-acyltransferase NeuD-like VF_0144 8f69ee0e59e6b45d84d670a2f855bb88 214 Gene3D G3DSA:2.160.10.10 93 213 1.3E-26 T 10-10-2018 VF_0136 36ea71c55fb067050f6d866791bbd299 234 Gene3D G3DSA:1.10.510.10 137 233 9.3E-14 T 10-10-2018 VF_0136 36ea71c55fb067050f6d866791bbd299 234 SUPERFAMILY SSF56112 45 194 7.69E-18 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily VF_0136 36ea71c55fb067050f6d866791bbd299 234 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 29 229 8.0E-66 T 10-10-2018 VF_0136 36ea71c55fb067050f6d866791bbd299 234 Hamap MF_00521 3-deoxy-D-manno-octulosonic acid kinase [kdkA]. 1 233 41.976 T 10-10-2018 IPR022826 3-deoxy-D-manno-octulosonic acid kinase GO:0016773 KEGG: 00540+2.7.1.166|MetaCyc: PWY-7675|MetaCyc: PWY-7676 VF_1616 78ea81c6f9abb6c26edc8358f012b05b 209 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 24 204 1.5E-52 T 10-10-2018 IPR018635 Uncharacterised protein family UPF0319 VF_1616 78ea81c6f9abb6c26edc8358f012b05b 209 Hamap MF_00789 UPF0319 protein YccT [yccT]. 5 208 23.851 T 10-10-2018 IPR018635 Uncharacterised protein family UPF0319 VF_A1027 057d5f0afcffcc11d30e673e5da88f93 338 Gene3D G3DSA:3.40.50.2000 176 323 2.5E-29 T 10-10-2018 VF_A1027 057d5f0afcffcc11d30e673e5da88f93 338 Gene3D G3DSA:3.40.50.2000 8 175 3.1E-12 T 10-10-2018 VF_A1027 057d5f0afcffcc11d30e673e5da88f93 338 Pfam PF00534 Glycosyl transferases group 1 168 317 1.2E-23 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 VF_A1027 057d5f0afcffcc11d30e673e5da88f93 338 Pfam PF13579 Glycosyl transferase 4-like domain 18 155 3.1E-7 T 10-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 VF_A1027 057d5f0afcffcc11d30e673e5da88f93 338 SUPERFAMILY SSF53756 14 337 1.1E-53 T 10-10-2018 VF_A0621 bd67441ad10dff1d6f722af78d8a3fdd 176 Gene3D G3DSA:2.60.20.10 87 174 2.4E-17 T 10-10-2018 VF_A0621 bd67441ad10dff1d6f722af78d8a3fdd 176 SMART SM00247 95 173 1.1E-4 T 10-10-2018 IPR001064 Beta/gamma crystallin VF_A0621 bd67441ad10dff1d6f722af78d8a3fdd 176 SUPERFAMILY SSF49695 93 173 5.4E-15 T 10-10-2018 IPR011024 Gamma-crystallin-like VF_A0621 bd67441ad10dff1d6f722af78d8a3fdd 176 Pfam PF00030 Beta/Gamma crystallin 96 171 7.1E-7 T 10-10-2018 IPR001064 Beta/gamma crystallin VF_1665 6c8cb3877261e70bc3785ada22624c43 622 Pfam PF01553 Acyltransferase 442 565 5.6E-21 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VF_1665 6c8cb3877261e70bc3785ada22624c43 622 Pfam PF07690 Major Facilitator Superfamily 17 382 3.2E-20 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_1665 6c8cb3877261e70bc3785ada22624c43 622 SUPERFAMILY SSF103473 10 422 1.31E-26 T 10-10-2018 IPR036259 MFS transporter superfamily VF_1665 6c8cb3877261e70bc3785ada22624c43 622 Gene3D G3DSA:1.20.1250.20 9 420 3.7E-27 T 10-10-2018 VF_1665 6c8cb3877261e70bc3785ada22624c43 622 SMART SM00563 454 568 9.1E-33 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VF_1665 6c8cb3877261e70bc3785ada22624c43 622 SUPERFAMILY SSF69593 363 607 3.4E-32 T 10-10-2018 VF_A0731 d74ed31d3ecf6237b98892c3bebda3fd 543 Gene3D G3DSA:3.90.400.10 105 175 5.9E-195 T 10-10-2018 VF_A0731 d74ed31d3ecf6237b98892c3bebda3fd 543 Gene3D G3DSA:3.20.20.80 5 458 5.9E-195 T 10-10-2018 VF_A0731 d74ed31d3ecf6237b98892c3bebda3fd 543 Pfam PF00128 Alpha amylase, catalytic domain 28 363 1.3E-119 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_A0731 d74ed31d3ecf6237b98892c3bebda3fd 543 Gene3D G3DSA:2.60.40.1180 468 543 2.2E-17 T 10-10-2018 IPR013780 Glycosyl hydrolase, all-beta VF_A0731 d74ed31d3ecf6237b98892c3bebda3fd 543 SUPERFAMILY SSF51011 466 542 1.27E-16 T 10-10-2018 VF_A0731 d74ed31d3ecf6237b98892c3bebda3fd 543 SUPERFAMILY SSF51445 3 463 4.03E-156 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_A0731 d74ed31d3ecf6237b98892c3bebda3fd 543 Pfam PF16657 Maltogenic Amylase, C-terminal domain 466 537 1.1E-8 T 10-10-2018 IPR032091 Maltogenic Amylase, C-terminal VF_A0731 d74ed31d3ecf6237b98892c3bebda3fd 543 SMART SM00642 13 405 1.6E-154 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_A0374 931c86c1c282da9c64ee8745767718b0 434 SMART SM00490 276 357 4.3E-32 T 10-10-2018 IPR001650 Helicase, C-terminal VF_A0374 931c86c1c282da9c64ee8745767718b0 434 Gene3D G3DSA:3.40.50.300 231 432 2.9E-47 T 10-10-2018 VF_A0374 931c86c1c282da9c64ee8745767718b0 434 Pfam PF00271 Helicase conserved C-terminal domain 252 357 6.8E-28 T 10-10-2018 IPR001650 Helicase, C-terminal VF_A0374 931c86c1c282da9c64ee8745767718b0 434 SUPERFAMILY SSF52540 94 377 1.5E-74 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0374 931c86c1c282da9c64ee8745767718b0 434 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 171 179 - T 10-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VF_A0374 931c86c1c282da9c64ee8745767718b0 434 SMART SM00487 36 240 5.0E-61 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_A0374 931c86c1c282da9c64ee8745767718b0 434 Gene3D G3DSA:3.40.50.300 6 229 1.5E-77 T 10-10-2018 VF_A0374 931c86c1c282da9c64ee8745767718b0 434 Pfam PF00270 DEAD/DEAH box helicase 41 213 2.2E-51 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_0027 8082bd2c5b79e892e97523cb46d0eea7 485 Pfam PF02386 Cation transport protein 39 479 5.5E-90 T 10-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 VF_0027 8082bd2c5b79e892e97523cb46d0eea7 485 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 84 468 1.0E-116 T 10-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 VF_0027 8082bd2c5b79e892e97523cb46d0eea7 485 PIRSF PIRSF006247 1 485 2.0E-177 T 10-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 VF_2567 c0b452cb29665ecd57d2f261f2d8ae0d 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 18.787 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2567 c0b452cb29665ecd57d2f261f2d8ae0d 177 SUPERFAMILY SSF47928 3 105 1.14E-28 T 10-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2567 c0b452cb29665ecd57d2f261f2d8ae0d 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 7.6E-60 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2567 c0b452cb29665ecd57d2f261f2d8ae0d 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 175 8.0E-52 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2567 c0b452cb29665ecd57d2f261f2d8ae0d 177 Gene3D G3DSA:1.10.520.20 2 106 5.5E-38 T 10-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2567 c0b452cb29665ecd57d2f261f2d8ae0d 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 3.3E-27 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2567 c0b452cb29665ecd57d2f261f2d8ae0d 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 3.3E-27 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2567 c0b452cb29665ecd57d2f261f2d8ae0d 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 3.3E-27 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2567 c0b452cb29665ecd57d2f261f2d8ae0d 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 3.3E-27 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2567 c0b452cb29665ecd57d2f261f2d8ae0d 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 3.3E-27 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2567 c0b452cb29665ecd57d2f261f2d8ae0d 177 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 10-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2402 dc0ad0a936de0eb157e231b10001f636 355 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 10-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VF_2402 dc0ad0a936de0eb157e231b10001f636 355 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 350 50.391 T 10-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VF_2402 dc0ad0a936de0eb157e231b10001f636 355 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 10-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VF_2402 dc0ad0a936de0eb157e231b10001f636 355 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 348 6.2E-141 T 10-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VF_2402 dc0ad0a936de0eb157e231b10001f636 355 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 347 1.4E-138 T 10-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VF_2402 dc0ad0a936de0eb157e231b10001f636 355 SUPERFAMILY SSF51726 1 354 2.79E-122 T 10-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VF_2402 dc0ad0a936de0eb157e231b10001f636 355 Gene3D G3DSA:3.20.20.210 1 355 3.7E-159 T 10-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VF_A0838 76eb28df9a7bf887f89ba499c8297f6e 301 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 127 213 3.4E-18 T 10-10-2018 IPR039561 Peptidase M15C GO:0008233 VF_A0838 76eb28df9a7bf887f89ba499c8297f6e 301 Gene3D G3DSA:3.30.1380.10 63 213 8.3E-16 T 10-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VF_A0838 76eb28df9a7bf887f89ba499c8297f6e 301 SUPERFAMILY SSF55166 52 214 1.7E-28 T 10-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VF_A1113 835d276d99e5a97d02214e35704490b3 147 SMART SM00344 1 110 1.5E-37 T 10-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VF_A1113 835d276d99e5a97d02214e35704490b3 147 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 47 3.1E-16 T 10-10-2018 VF_A1113 835d276d99e5a97d02214e35704490b3 147 SUPERFAMILY SSF54909 63 146 2.68E-17 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel VF_A1113 835d276d99e5a97d02214e35704490b3 147 Gene3D G3DSA:1.10.10.10 1 54 5.2E-22 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1113 835d276d99e5a97d02214e35704490b3 147 Gene3D G3DSA:3.30.70.920 55 138 2.0E-20 T 10-10-2018 VF_A1113 835d276d99e5a97d02214e35704490b3 147 SUPERFAMILY SSF46785 1 60 2.7E-15 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A1113 835d276d99e5a97d02214e35704490b3 147 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 10-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VF_A1113 835d276d99e5a97d02214e35704490b3 147 Pfam PF01037 Lrp/AsnC ligand binding domain 67 141 5.9E-17 T 10-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VF_A1113 835d276d99e5a97d02214e35704490b3 147 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 1.8E-15 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VF_A1113 835d276d99e5a97d02214e35704490b3 147 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 1.8E-15 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VF_A1113 835d276d99e5a97d02214e35704490b3 147 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 1.8E-15 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VF_A0113 64785d46674d2e3092121c62a5b4734c 219 SUPERFAMILY SSF55469 7 217 1.3E-52 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VF_A0113 64785d46674d2e3092121c62a5b4734c 219 Pfam PF00881 Nitroreductase family 10 194 2.0E-16 T 10-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 VF_A0113 64785d46674d2e3092121c62a5b4734c 219 Gene3D G3DSA:3.40.109.10 1 218 1.9E-47 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VF_A0317 2485ea44df3db5a862b2c70eb6473705 248 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0317 2485ea44df3db5a862b2c70eb6473705 248 Pfam PF00005 ABC transporter 26 163 1.7E-26 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0317 2485ea44df3db5a862b2c70eb6473705 248 SMART SM00382 33 211 2.9E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0317 2485ea44df3db5a862b2c70eb6473705 248 SUPERFAMILY SSF52540 9 209 1.69E-52 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0317 2485ea44df3db5a862b2c70eb6473705 248 Gene3D G3DSA:3.40.50.300 9 228 1.0E-55 T 10-10-2018 VF_0261 3c4e1e90ff350f646c3e47a1143e10c9 206 Gene3D G3DSA:3.10.290.10 103 191 7.6E-36 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VF_0261 3c4e1e90ff350f646c3e47a1143e10c9 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 4.7E-84 T 10-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 VF_0261 3c4e1e90ff350f646c3e47a1143e10c9 206 SMART SM00363 96 160 5.2E-19 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0261 3c4e1e90ff350f646c3e47a1143e10c9 206 Pfam PF01479 S4 domain 97 143 1.2E-16 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0261 3c4e1e90ff350f646c3e47a1143e10c9 206 Gene3D G3DSA:1.10.1050.10 1 102 1.3E-44 T 10-10-2018 VF_0261 3c4e1e90ff350f646c3e47a1143e10c9 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 10-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0261 3c4e1e90ff350f646c3e47a1143e10c9 206 SUPERFAMILY SSF55174 3 206 1.83E-71 T 10-10-2018 VF_0261 3c4e1e90ff350f646c3e47a1143e10c9 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.14 T 10-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 VF_0261 3c4e1e90ff350f646c3e47a1143e10c9 206 SMART SM01390 3 95 1.3E-49 T 10-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 VF_0261 3c4e1e90ff350f646c3e47a1143e10c9 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 3.9E-32 T 10-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 VF_1189 851c398853155de7c96ebfb9337def35 199 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 3 197 35.603 T 10-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VF_1189 851c398853155de7c96ebfb9337def35 199 Pfam PF00925 GTP cyclohydrolase II 21 171 2.3E-58 T 10-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VF_1189 851c398853155de7c96ebfb9337def35 199 SUPERFAMILY SSF142695 19 173 3.27E-53 T 10-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VF_1189 851c398853155de7c96ebfb9337def35 199 Gene3D G3DSA:3.40.50.10990 6 174 3.6E-63 T 10-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VF_2158 0ed3f7278d6fee75d7888c58065eaaa6 846 SUPERFAMILY SSF53732 361 841 4.58E-145 T 10-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 VF_2158 0ed3f7278d6fee75d7888c58065eaaa6 846 SUPERFAMILY SSF74778 1 143 7.19E-59 T 10-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VF_2158 0ed3f7278d6fee75d7888c58065eaaa6 846 PIRSF PIRSF036687 1 840 0.0 T 10-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VF_2158 0ed3f7278d6fee75d7888c58065eaaa6 846 Pfam PF00330 Aconitase family (aconitate hydratase) 453 799 6.0E-42 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VF_2158 0ed3f7278d6fee75d7888c58065eaaa6 846 Gene3D G3DSA:3.30.499.10 383 510 2.8E-146 T 10-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 VF_2158 0ed3f7278d6fee75d7888c58065eaaa6 846 Pfam PF11791 Aconitate B N-terminal domain 1 140 5.2E-59 T 10-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VF_2158 0ed3f7278d6fee75d7888c58065eaaa6 846 Gene3D G3DSA:3.40.1060.10 366 662 2.8E-146 T 10-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 VF_2158 0ed3f7278d6fee75d7888c58065eaaa6 846 Pfam PF06434 Aconitate hydratase 2 N-terminus 152 363 8.1E-95 T 10-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VF_2158 0ed3f7278d6fee75d7888c58065eaaa6 846 ProSitePatterns PS01244 Aconitase family signature 2. 742 755 - T 10-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 VF_2158 0ed3f7278d6fee75d7888c58065eaaa6 846 SUPERFAMILY SSF52016 146 353 2.94E-66 T 10-10-2018 VF_2158 0ed3f7278d6fee75d7888c58065eaaa6 846 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 2 834 0.0 T 10-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VF_2158 0ed3f7278d6fee75d7888c58065eaaa6 846 Gene3D G3DSA:3.30.499.10 664 846 9.1E-71 T 10-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 VF_2158 0ed3f7278d6fee75d7888c58065eaaa6 846 Gene3D G3DSA:3.20.19.10 146 342 3.2E-75 T 10-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 VF_2158 0ed3f7278d6fee75d7888c58065eaaa6 846 Gene3D G3DSA:1.25.40.310 1 144 1.7E-62 T 10-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VF_A0085 71828f4d2b16619cc54efe741ecfccb6 364 Gene3D G3DSA:1.25.40.10 31 232 3.2E-7 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0085 71828f4d2b16619cc54efe741ecfccb6 364 SUPERFAMILY SSF48452 85 202 2.09E-7 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0085 71828f4d2b16619cc54efe741ecfccb6 364 Pfam PF02698 DUF218 domain 193 311 1.9E-19 T 10-10-2018 IPR003848 Domain of unknown function DUF218 VF_0204 6f7a6fab5f410b5ab3f5774aa2c0f67e 96 SMART SM00883 2 95 1.5E-50 T 10-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VF_0204 6f7a6fab5f410b5ab3f5774aa2c0f67e 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 10-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 VF_0204 6f7a6fab5f410b5ab3f5774aa2c0f67e 96 Gene3D G3DSA:2.30.33.40 1 96 1.2E-36 T 10-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 VF_0204 6f7a6fab5f410b5ab3f5774aa2c0f67e 96 PRINTS PR00297 10kDa chaperonin signature 82 95 2.4E-27 T 10-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VF_0204 6f7a6fab5f410b5ab3f5774aa2c0f67e 96 PRINTS PR00297 10kDa chaperonin signature 3 18 2.4E-27 T 10-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VF_0204 6f7a6fab5f410b5ab3f5774aa2c0f67e 96 PRINTS PR00297 10kDa chaperonin signature 60 72 2.4E-27 T 10-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VF_0204 6f7a6fab5f410b5ab3f5774aa2c0f67e 96 PRINTS PR00297 10kDa chaperonin signature 25 46 2.4E-27 T 10-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VF_0204 6f7a6fab5f410b5ab3f5774aa2c0f67e 96 Pfam PF00166 Chaperonin 10 Kd subunit 2 95 4.0E-31 T 10-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VF_0204 6f7a6fab5f410b5ab3f5774aa2c0f67e 96 SUPERFAMILY SSF50129 1 96 3.65E-31 T 10-10-2018 IPR011032 GroES-like superfamily VF_0204 6f7a6fab5f410b5ab3f5774aa2c0f67e 96 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 24.35 T 10-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VF_A0632 3ba7d97f362c782852e45b5949a2e9c0 192 Pfam PF08867 FRG domain 35 117 3.6E-20 T 10-10-2018 IPR014966 FRG domain VF_A0632 3ba7d97f362c782852e45b5949a2e9c0 192 SMART SM00901 31 126 1.5E-27 T 10-10-2018 IPR014966 FRG domain VF_0239 c49b5cbd089b36ac088feb7de3aca6db 274 PIRSF PIRSF002158 13 274 2.0E-102 T 10-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0239 c49b5cbd089b36ac088feb7de3aca6db 274 SUPERFAMILY SSF50104 127 272 8.42E-62 T 10-10-2018 IPR008991 Translation protein SH3-like domain superfamily VF_0239 c49b5cbd089b36ac088feb7de3aca6db 274 Gene3D G3DSA:4.10.950.10 196 274 9.8E-37 T 10-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0239 c49b5cbd089b36ac088feb7de3aca6db 274 Gene3D G3DSA:2.30.30.30 115 195 2.1E-32 T 10-10-2018 IPR014722 Ribosomal protein L2, domain 2 VF_0239 c49b5cbd089b36ac088feb7de3aca6db 274 SMART SM01382 124 252 5.9E-93 T 10-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 VF_0239 c49b5cbd089b36ac088feb7de3aca6db 274 Gene3D G3DSA:2.40.50.140 1 114 1.3E-49 T 10-10-2018 VF_0239 c49b5cbd089b36ac088feb7de3aca6db 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 47.287 T 10-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 VF_0239 c49b5cbd089b36ac088feb7de3aca6db 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 273 5.8E-130 T 10-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 VF_0239 c49b5cbd089b36ac088feb7de3aca6db 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 2.7E-33 T 10-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0239 c49b5cbd089b36ac088feb7de3aca6db 274 SMART SM01383 42 118 6.0E-46 T 10-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0239 c49b5cbd089b36ac088feb7de3aca6db 274 SUPERFAMILY SSF50249 2 125 3.29E-49 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_0239 c49b5cbd089b36ac088feb7de3aca6db 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 250 3.1E-57 T 10-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 VF_0239 c49b5cbd089b36ac088feb7de3aca6db 274 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 10-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_1779 5600a1e2e5c60a97c1c86cc2ab57c853 111 PIRSF PIRSF020632 3 111 7.3E-60 T 10-10-2018 IPR014510 Tellurite resistance predicted, YeaR VF_1779 5600a1e2e5c60a97c1c86cc2ab57c853 111 Gene3D G3DSA:2.60.120.10 1 111 2.8E-50 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_1779 5600a1e2e5c60a97c1c86cc2ab57c853 111 Pfam PF09313 Domain of unknown function (DUF1971) 14 94 6.9E-25 T 10-10-2018 IPR015392 Domain of unknown function DUF1971 VF_1779 5600a1e2e5c60a97c1c86cc2ab57c853 111 SUPERFAMILY SSF51197 6 99 4.76E-31 T 10-10-2018 VF_1535 688dccc0c08911a9db7e6f69d9b6ffc8 249 Pfam PF00005 ABC transporter 24 172 2.2E-39 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1535 688dccc0c08911a9db7e6f69d9b6ffc8 249 Gene3D G3DSA:3.40.50.300 6 247 9.4E-79 T 10-10-2018 VF_1535 688dccc0c08911a9db7e6f69d9b6ffc8 249 SMART SM00382 33 220 1.1E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1535 688dccc0c08911a9db7e6f69d9b6ffc8 249 PIRSF PIRSF039085 5 248 6.1E-110 T 10-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VF_1535 688dccc0c08911a9db7e6f69d9b6ffc8 249 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1535 688dccc0c08911a9db7e6f69d9b6ffc8 249 SUPERFAMILY SSF52540 8 242 2.54E-81 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2295 f09aa646d41f62a74b74f41211145a60 192 Gene3D G3DSA:3.30.70.60 91 192 7.7E-27 T 10-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 VF_2295 f09aa646d41f62a74b74f41211145a60 192 Pfam PF04350 Pilus assembly protein, PilO 46 188 9.7E-46 T 10-10-2018 IPR007445 Pilus assembly protein, PilO VF_2295 f09aa646d41f62a74b74f41211145a60 192 PIRSF PIRSF016482 1 192 7.6E-63 T 10-10-2018 IPR007445 Pilus assembly protein, PilO VF_A0413 586b90f9ce3f1ef898c538ef91e3bc08 65 Pfam PF03889 Domain of unknown function 20 53 3.8E-20 T 10-10-2018 IPR005589 Alternative ribosome-rescue factor A GO:0072344 VF_A1066 34aee757721f65a573c48b76088f66a4 299 Pfam PF03466 LysR substrate binding domain 96 297 1.3E-30 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A1066 34aee757721f65a573c48b76088f66a4 299 SUPERFAMILY SSF53850 95 298 3.8E-33 T 10-10-2018 VF_A1066 34aee757721f65a573c48b76088f66a4 299 SUPERFAMILY SSF46785 3 87 7.07E-15 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A1066 34aee757721f65a573c48b76088f66a4 299 Gene3D G3DSA:3.40.190.10 104 294 4.1E-52 T 10-10-2018 VF_A1066 34aee757721f65a573c48b76088f66a4 299 Gene3D G3DSA:1.10.10.10 3 94 1.8E-15 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1066 34aee757721f65a573c48b76088f66a4 299 Gene3D G3DSA:3.40.190.10 164 267 4.1E-52 T 10-10-2018 VF_A1066 34aee757721f65a573c48b76088f66a4 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.8E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1066 34aee757721f65a573c48b76088f66a4 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.8E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1066 34aee757721f65a573c48b76088f66a4 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.8E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1066 34aee757721f65a573c48b76088f66a4 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 67 2.2E-16 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0545 32ace8135b24a0b90c5f233dd7192e07 172 Gene3D G3DSA:3.30.1360.80 1 172 4.7E-72 T 10-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VF_0545 32ace8135b24a0b90c5f233dd7192e07 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 1.2E-51 T 10-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VF_0545 32ace8135b24a0b90c5f233dd7192e07 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 1.2E-51 T 10-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VF_0545 32ace8135b24a0b90c5f233dd7192e07 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 1.2E-51 T 10-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VF_0545 32ace8135b24a0b90c5f233dd7192e07 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 1.2E-51 T 10-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VF_0545 32ace8135b24a0b90c5f233dd7192e07 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 1.2E-51 T 10-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VF_0545 32ace8135b24a0b90c5f233dd7192e07 172 PIRSF PIRSF006160 1 162 3.8E-66 T 10-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VF_0545 32ace8135b24a0b90c5f233dd7192e07 172 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 154 6.0E-84 T 10-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VF_0545 32ace8135b24a0b90c5f233dd7192e07 172 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 35.624 T 10-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VF_0545 32ace8135b24a0b90c5f233dd7192e07 172 SUPERFAMILY SSF63411 4 161 5.95E-66 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VF_0545 32ace8135b24a0b90c5f233dd7192e07 172 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 154 2.8E-61 T 10-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VF_0098 f4281bde25bb0c3b35859d7692d841a4 469 Gene3D G3DSA:3.10.20.70 2 104 2.9E-40 T 10-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VF_0098 f4281bde25bb0c3b35859d7692d841a4 469 SMART SM01230 102 379 1.6E-150 T 10-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VF_0098 f4281bde25bb0c3b35859d7692d841a4 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 3.6E-136 T 10-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VF_0098 f4281bde25bb0c3b35859d7692d841a4 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 10-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 VF_0098 f4281bde25bb0c3b35859d7692d841a4 469 SUPERFAMILY SSF55931 102 468 1.28E-136 T 10-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 VF_0098 f4281bde25bb0c3b35859d7692d841a4 469 SUPERFAMILY SSF54368 3 99 4.19E-35 T 10-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VF_0098 f4281bde25bb0c3b35859d7692d841a4 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 10-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 VF_0098 f4281bde25bb0c3b35859d7692d841a4 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 10-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VF_0098 f4281bde25bb0c3b35859d7692d841a4 469 Gene3D G3DSA:3.30.590.10 105 457 3.8E-146 T 10-10-2018 VF_0098 f4281bde25bb0c3b35859d7692d841a4 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 5.8E-208 T 10-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VF_0098 f4281bde25bb0c3b35859d7692d841a4 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 7.7E-31 T 10-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 VF_A0358 d5997473293cc3c805a7e1457f035932 370 SUPERFAMILY SSF111369 60 216 2.09E-24 T 10-10-2018 VF_A0358 d5997473293cc3c805a7e1457f035932 370 Gene3D G3DSA:2.40.30.170 56 281 3.4E-78 T 10-10-2018 VF_A0358 d5997473293cc3c805a7e1457f035932 370 Gene3D G3DSA:2.40.50.100 70 203 3.4E-78 T 10-10-2018 VF_A0358 d5997473293cc3c805a7e1457f035932 370 Gene3D G3DSA:1.10.287.470 104 163 3.4E-78 T 10-10-2018 VF_A0358 d5997473293cc3c805a7e1457f035932 370 Gene3D G3DSA:2.40.420.20 52 357 3.4E-78 T 10-10-2018 VF_A0358 d5997473293cc3c805a7e1457f035932 370 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 263 1.8E-13 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VF_A0358 d5997473293cc3c805a7e1457f035932 370 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 51 359 2.9E-65 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VF_1908 cd49891692131edec62538f8b09a40dd 563 Gene3D G3DSA:3.30.565.10 430 563 1.3E-27 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1908 cd49891692131edec62538f8b09a40dd 563 SUPERFAMILY SSF158472 176 222 1.7E-9 T 10-10-2018 VF_1908 cd49891692131edec62538f8b09a40dd 563 SMART SM00304 176 228 1.0E-10 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_1908 cd49891692131edec62538f8b09a40dd 563 Pfam PF07730 Histidine kinase 365 429 6.0E-15 T 10-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 VF_1908 cd49891692131edec62538f8b09a40dd 563 SUPERFAMILY SSF55874 436 561 4.32E-19 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1908 cd49891692131edec62538f8b09a40dd 563 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 34 127 1.8E-20 T 10-10-2018 IPR029095 NarX-like, N-terminal VF_1908 cd49891692131edec62538f8b09a40dd 563 PIRSF PIRSF003167 1 563 1.1E-185 T 10-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 VF_1908 cd49891692131edec62538f8b09a40dd 563 Gene3D G3DSA:1.20.120.960 40 148 8.6E-13 T 10-10-2018 VF_1908 cd49891692131edec62538f8b09a40dd 563 Gene3D G3DSA:1.10.287.130 173 286 6.3E-9 T 10-10-2018 VF_1908 cd49891692131edec62538f8b09a40dd 563 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 473 562 5.4E-8 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1908 cd49891692131edec62538f8b09a40dd 563 Pfam PF00672 HAMP domain 176 222 4.0E-10 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_1908 cd49891692131edec62538f8b09a40dd 563 SMART SM00387 470 563 1.3E-8 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0183 7ecc079a84d8f945f40bbfd0d205a1fe 360 Pfam PF16363 GDP-mannose 4,6 dehydratase 12 326 1.8E-28 T 10-10-2018 IPR016040 NAD(P)-binding domain VF_0183 7ecc079a84d8f945f40bbfd0d205a1fe 360 TIGRFAM TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase 5 353 1.2E-158 T 10-10-2018 IPR013445 CDP-glucose 4,6-dehydratase KEGG: 00520+4.2.1.45|MetaCyc: PWY-5833 VF_0183 7ecc079a84d8f945f40bbfd0d205a1fe 360 Gene3D G3DSA:3.40.50.720 1 192 1.1E-50 T 10-10-2018 VF_0183 7ecc079a84d8f945f40bbfd0d205a1fe 360 SUPERFAMILY SSF51735 2 344 3.1E-64 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0183 7ecc079a84d8f945f40bbfd0d205a1fe 360 Gene3D G3DSA:3.90.25.10 193 358 6.8E-67 T 10-10-2018 VF_A0962 6988af66c716e0dd9f37bc96f1c4ea44 303 Pfam PF04055 Radical SAM superfamily 37 235 3.9E-15 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_A0962 6988af66c716e0dd9f37bc96f1c4ea44 303 TIGRFAM TIGR04041 activase_YjjW: glycine radical enzyme activase, YjjW family 18 298 1.6E-123 T 10-10-2018 IPR023912 Putative glycyl-radical enzyme activating enzyme YjjW VF_A0962 6988af66c716e0dd9f37bc96f1c4ea44 303 Gene3D G3DSA:3.20.20.70 89 297 4.7E-33 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A0962 6988af66c716e0dd9f37bc96f1c4ea44 303 Gene3D G3DSA:3.20.20.70 16 68 9.3E-11 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A0962 6988af66c716e0dd9f37bc96f1c4ea44 303 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 91 102 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_A0962 6988af66c716e0dd9f37bc96f1c4ea44 303 PIRSF PIRSF000371 9 303 5.6E-86 T 10-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 VF_A0962 6988af66c716e0dd9f37bc96f1c4ea44 303 ProSitePatterns PS01087 Radical activating enzymes signature. 31 52 - T 10-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 VF_A0962 6988af66c716e0dd9f37bc96f1c4ea44 303 SUPERFAMILY SSF102114 108 259 4.32E-10 T 10-10-2018 VF_A0962 6988af66c716e0dd9f37bc96f1c4ea44 303 Pfam PF13353 4Fe-4S single cluster domain 29 192 2.4E-9 T 10-10-2018 VF_A0962 6988af66c716e0dd9f37bc96f1c4ea44 303 SUPERFAMILY SSF54862 57 150 5.48E-17 T 10-10-2018 VF_A0997 1c60879bba1da2212e5574f805c2d22a 251 SUPERFAMILY SSF51735 4 250 3.38E-76 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0997 1c60879bba1da2212e5574f805c2d22a 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.6E-15 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0997 1c60879bba1da2212e5574f805c2d22a 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.6E-15 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0997 1c60879bba1da2212e5574f805c2d22a 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.6E-15 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0997 1c60879bba1da2212e5574f805c2d22a 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.3E-40 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0997 1c60879bba1da2212e5574f805c2d22a 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.3E-40 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0997 1c60879bba1da2212e5574f805c2d22a 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.3E-40 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0997 1c60879bba1da2212e5574f805c2d22a 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.3E-40 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0997 1c60879bba1da2212e5574f805c2d22a 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.3E-40 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0997 1c60879bba1da2212e5574f805c2d22a 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.3E-40 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0997 1c60879bba1da2212e5574f805c2d22a 251 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 4 251 3.6E-129 T 10-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 VF_A0997 1c60879bba1da2212e5574f805c2d22a 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VF_A0997 1c60879bba1da2212e5574f805c2d22a 251 Pfam PF00106 short chain dehydrogenase 9 201 6.2E-56 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0997 1c60879bba1da2212e5574f805c2d22a 251 Gene3D G3DSA:3.40.50.720 1 251 3.5E-79 T 10-10-2018 VF_2313 987e1fcbd4f9fce332dfbf494d066c5e 248 Gene3D G3DSA:3.40.1280.10 78 245 4.8E-55 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VF_2313 987e1fcbd4f9fce332dfbf494d066c5e 248 SUPERFAMILY SSF75217 69 246 3.4E-39 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases VF_2313 987e1fcbd4f9fce332dfbf494d066c5e 248 Gene3D G3DSA:3.30.1330.30 1 77 3.7E-25 T 10-10-2018 IPR029064 50S ribosomal protein L30e-like VF_2313 987e1fcbd4f9fce332dfbf494d066c5e 248 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 3 245 39.19 T 10-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB VF_2313 987e1fcbd4f9fce332dfbf494d066c5e 248 SMART SM00967 5 81 1.6E-20 T 10-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 VF_2313 987e1fcbd4f9fce332dfbf494d066c5e 248 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 4 244 7.7E-76 T 10-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 VF_2313 987e1fcbd4f9fce332dfbf494d066c5e 248 Pfam PF00588 SpoU rRNA Methylase family 97 238 4.8E-31 T 10-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VF_2313 987e1fcbd4f9fce332dfbf494d066c5e 248 SUPERFAMILY SSF55315 3 77 1.77E-19 T 10-10-2018 IPR029064 50S ribosomal protein L30e-like VF_2313 987e1fcbd4f9fce332dfbf494d066c5e 248 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 5 79 2.5E-18 T 10-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 VF_1644 05b1f64f4adfcfad494bfc95a9a4ebab 337 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 4 336 8.1E-122 T 10-10-2018 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 VF_1644 05b1f64f4adfcfad494bfc95a9a4ebab 337 PRINTS PR00139 Asparaginase/glutaminase family signature 84 102 1.3E-17 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VF_1644 05b1f64f4adfcfad494bfc95a9a4ebab 337 PRINTS PR00139 Asparaginase/glutaminase family signature 6 17 1.3E-17 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VF_1644 05b1f64f4adfcfad494bfc95a9a4ebab 337 PRINTS PR00139 Asparaginase/glutaminase family signature 261 279 1.3E-17 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VF_1644 05b1f64f4adfcfad494bfc95a9a4ebab 337 PIRSF PIRSF001220 1 335 5.1E-97 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VF_1644 05b1f64f4adfcfad494bfc95a9a4ebab 337 Pfam PF00710 Asparaginase, N-terminal 5 193 1.0E-67 T 10-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 VF_1644 05b1f64f4adfcfad494bfc95a9a4ebab 337 Gene3D G3DSA:3.40.50.40 210 337 2.9E-47 T 10-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 VF_1644 05b1f64f4adfcfad494bfc95a9a4ebab 337 PIRSF PIRSF500176 2 333 7.8E-111 T 10-10-2018 VF_1644 05b1f64f4adfcfad494bfc95a9a4ebab 337 SUPERFAMILY SSF53774 3 336 2.22E-113 T 10-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 VF_1644 05b1f64f4adfcfad494bfc95a9a4ebab 337 SMART SM00870 5 324 7.2E-144 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VF_1644 05b1f64f4adfcfad494bfc95a9a4ebab 337 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 8 16 - T 10-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 VF_1644 05b1f64f4adfcfad494bfc95a9a4ebab 337 Gene3D G3DSA:3.40.50.1170 1 209 8.8E-91 T 10-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 VF_1644 05b1f64f4adfcfad494bfc95a9a4ebab 337 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 85 95 - T 10-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 VF_A0802 bba6fcc7623735e53dd77ae1ab1f3cc9 313 Gene3D G3DSA:2.40.50.180 41 107 6.1E-29 T 10-10-2018 VF_A0802 bba6fcc7623735e53dd77ae1ab1f3cc9 313 PIRSF PIRSF002867 1 312 1.6E-104 T 10-10-2018 IPR024181 Chemotaxis response regulator CheV VF_A0802 bba6fcc7623735e53dd77ae1ab1f3cc9 313 Gene3D G3DSA:3.40.50.2300 180 309 3.0E-20 T 10-10-2018 VF_A0802 bba6fcc7623735e53dd77ae1ab1f3cc9 313 SUPERFAMILY SSF52172 180 308 1.71E-21 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0802 bba6fcc7623735e53dd77ae1ab1f3cc9 313 Pfam PF01584 CheW-like domain 21 160 2.9E-34 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VF_A0802 bba6fcc7623735e53dd77ae1ab1f3cc9 313 SUPERFAMILY SSF50341 16 161 4.84E-34 T 10-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VF_A0802 bba6fcc7623735e53dd77ae1ab1f3cc9 313 Pfam PF00072 Response regulator receiver domain 186 297 2.5E-14 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0802 bba6fcc7623735e53dd77ae1ab1f3cc9 313 Gene3D G3DSA:2.30.30.40 24 140 6.1E-29 T 10-10-2018 VF_A0802 bba6fcc7623735e53dd77ae1ab1f3cc9 313 SMART SM00448 184 305 2.3E-11 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0802 bba6fcc7623735e53dd77ae1ab1f3cc9 313 SMART SM00260 17 158 8.7E-25 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VF_A0929 599bb4d73c346b2e25d85be258f6c605 155 Pfam PF07670 Nucleoside recognition 31 124 5.4E-7 T 10-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VF_0983 b531b0e2d4b3f80b894714a88baeacd6 120 Pfam PF03891 Domain of unknown function (DUF333) 80 117 3.5E-7 T 10-10-2018 IPR005590 Protein of unknown function DUF333 VF_0983 b531b0e2d4b3f80b894714a88baeacd6 120 Pfam PF03891 Domain of unknown function (DUF333) 32 69 3.7E-6 T 10-10-2018 IPR005590 Protein of unknown function DUF333 VF_A0107 6fec56c8e8527403a7197ec4ced7c8ee 606 Pfam PF02743 Cache domain 44 237 2.7E-17 T 10-10-2018 IPR033479 Double Cache domain 1 VF_A0107 6fec56c8e8527403a7197ec4ced7c8ee 606 Gene3D G3DSA:3.30.450.20 45 149 1.4E-45 T 10-10-2018 VF_A0107 6fec56c8e8527403a7197ec4ced7c8ee 606 Gene3D G3DSA:3.30.450.20 36 248 1.4E-45 T 10-10-2018 VF_A0107 6fec56c8e8527403a7197ec4ced7c8ee 606 SUPERFAMILY SSF103190 71 154 1.18E-7 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_A0107 6fec56c8e8527403a7197ec4ced7c8ee 606 SMART SM00283 344 605 1.2E-68 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0107 6fec56c8e8527403a7197ec4ced7c8ee 606 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 416 572 7.1E-42 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0107 6fec56c8e8527403a7197ec4ced7c8ee 606 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 372 401 3.2E-5 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0107 6fec56c8e8527403a7197ec4ced7c8ee 606 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 471 500 3.2E-5 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0107 6fec56c8e8527403a7197ec4ced7c8ee 606 SUPERFAMILY SSF58104 297 606 1.96E-78 T 10-10-2018 VF_A0107 6fec56c8e8527403a7197ec4ced7c8ee 606 Gene3D G3DSA:1.10.287.950 275 606 5.6E-73 T 10-10-2018 VF_A0107 6fec56c8e8527403a7197ec4ced7c8ee 606 SMART SM00304 332 382 120.0 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0107 6fec56c8e8527403a7197ec4ced7c8ee 606 SMART SM00304 275 329 2.1E-12 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0107 6fec56c8e8527403a7197ec4ced7c8ee 606 Pfam PF00672 HAMP domain 277 325 4.9E-9 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0178 7625ce1c9d4d0b9b0b991c45747a5b23 446 SUPERFAMILY SSF55874 282 446 2.36E-33 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0178 7625ce1c9d4d0b9b0b991c45747a5b23 446 SMART SM00388 227 293 1.1E-14 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0178 7625ce1c9d4d0b9b0b991c45747a5b23 446 Pfam PF00512 His Kinase A (phospho-acceptor) domain 228 292 1.7E-12 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0178 7625ce1c9d4d0b9b0b991c45747a5b23 446 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 6 445 5.8E-117 T 10-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 VF_A0178 7625ce1c9d4d0b9b0b991c45747a5b23 446 SMART SM00387 336 446 4.7E-27 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0178 7625ce1c9d4d0b9b0b991c45747a5b23 446 SUPERFAMILY SSF47384 210 292 2.16E-15 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_A0178 7625ce1c9d4d0b9b0b991c45747a5b23 446 Gene3D G3DSA:3.30.565.10 298 446 2.9E-34 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0178 7625ce1c9d4d0b9b0b991c45747a5b23 446 Gene3D G3DSA:1.10.287.130 177 293 4.1E-18 T 10-10-2018 VF_A0178 7625ce1c9d4d0b9b0b991c45747a5b23 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 401 1.8E-11 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0178 7625ce1c9d4d0b9b0b991c45747a5b23 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 387 1.8E-11 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0178 7625ce1c9d4d0b9b0b991c45747a5b23 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 432 445 1.8E-11 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0178 7625ce1c9d4d0b9b0b991c45747a5b23 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 427 1.8E-11 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0178 7625ce1c9d4d0b9b0b991c45747a5b23 446 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 336 446 3.3E-21 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_2084 da0e8a2f6f8fdb171d99d4811e9f2979 243 Gene3D G3DSA:3.20.20.70 1 243 5.4E-107 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_2084 da0e8a2f6f8fdb171d99d4811e9f2979 243 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 238 8.6E-104 T 10-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 VF_2084 da0e8a2f6f8fdb171d99d4811e9f2979 243 SUPERFAMILY SSF63892 4 241 3.53E-100 T 10-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 VF_2084 da0e8a2f6f8fdb171d99d4811e9f2979 243 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 243 131.001 T 10-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 VF_2084 da0e8a2f6f8fdb171d99d4811e9f2979 243 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 238 7.5E-99 T 10-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 VF_A0746 a46c43c67ea6efdc16ed704b55f84b6d 273 Pfam PF08241 Methyltransferase domain 61 152 3.3E-22 T 10-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 VF_A0746 a46c43c67ea6efdc16ed704b55f84b6d 273 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 17 272 31.125 T 10-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 VF_A0746 a46c43c67ea6efdc16ed704b55f84b6d 273 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 25 271 9.1E-63 T 10-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 VF_A0746 a46c43c67ea6efdc16ed704b55f84b6d 273 SUPERFAMILY SSF53335 19 216 4.11E-40 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_A0746 a46c43c67ea6efdc16ed704b55f84b6d 273 Gene3D G3DSA:3.40.50.150 11 213 2.5E-37 T 10-10-2018 VF_2568 539d760217c0ad7f9dd026c55d5c9a80 154 Gene3D G3DSA:1.20.5.620 60 120 1.7E-22 T 10-10-2018 VF_2568 539d760217c0ad7f9dd026c55d5c9a80 154 Pfam PF00430 ATP synthase B/B' CF(0) 4 135 1.8E-35 T 10-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 VF_2568 539d760217c0ad7f9dd026c55d5c9a80 154 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 136 12.856 T 10-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 VF_2568 539d760217c0ad7f9dd026c55d5c9a80 154 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 8 154 8.1E-58 T 10-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 VF_2568 539d760217c0ad7f9dd026c55d5c9a80 154 SUPERFAMILY SSF81573 61 119 1.15E-14 T 10-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily VF_1967 eb672674bd8917de7e796c5195e43bf3 618 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 618 48.062 T 10-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 VF_1967 eb672674bd8917de7e796c5195e43bf3 618 Gene3D G3DSA:3.30.70.3400 222 440 3.0E-49 T 10-10-2018 VF_1967 eb672674bd8917de7e796c5195e43bf3 618 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 348 597 5.3E-80 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VF_1967 eb672674bd8917de7e796c5195e43bf3 618 Pfam PF07549 SecD/SecF GG Motif 115 141 2.3E-7 T 10-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site VF_1967 eb672674bd8917de7e796c5195e43bf3 618 SUPERFAMILY SSF82866 413 609 1.44E-43 T 10-10-2018 VF_1967 eb672674bd8917de7e796c5195e43bf3 618 Gene3D G3DSA:3.30.1360.200 281 434 3.0E-49 T 10-10-2018 VF_1967 eb672674bd8917de7e796c5195e43bf3 618 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 123 603 3.9E-148 T 10-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 VF_1967 eb672674bd8917de7e796c5195e43bf3 618 Pfam PF13721 SecD export protein N-terminal TM region 2 103 2.1E-38 T 10-10-2018 IPR027398 SecD export protein N-terminal TM domain VF_1967 eb672674bd8917de7e796c5195e43bf3 618 Gene3D G3DSA:1.20.1640.10 451 600 1.6E-6 T 10-10-2018 VF_1967 eb672674bd8917de7e796c5195e43bf3 618 Pfam PF02355 Protein export membrane protein 436 597 3.5E-18 T 10-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VF_0903 a2b85ae9a41304d185a555f85db000fb 372 Gene3D G3DSA:3.40.50.720 3 353 1.3E-134 T 10-10-2018 VF_0903 a2b85ae9a41304d185a555f85db000fb 372 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 370 1.3E-153 T 10-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 VF_0903 a2b85ae9a41304d185a555f85db000fb 372 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 1.3E-45 T 10-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal VF_0903 a2b85ae9a41304d185a555f85db000fb 372 PIRSF PIRSF000183 1 371 3.5E-154 T 10-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 VF_0903 a2b85ae9a41304d185a555f85db000fb 372 SUPERFAMILY SSF51735 137 303 4.5E-49 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0903 a2b85ae9a41304d185a555f85db000fb 372 SMART SM01003 4 137 8.5E-78 T 10-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal VF_0903 a2b85ae9a41304d185a555f85db000fb 372 SMART SM01002 149 297 5.8E-87 T 10-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain VF_0903 a2b85ae9a41304d185a555f85db000fb 372 SUPERFAMILY SSF52283 1 360 2.47E-66 T 10-10-2018 VF_0903 a2b85ae9a41304d185a555f85db000fb 372 Gene3D G3DSA:3.40.50.720 130 305 1.3E-134 T 10-10-2018 VF_0903 a2b85ae9a41304d185a555f85db000fb 372 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 352 3.4E-82 T 10-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain VF_1246 78c91071a81df2dd36be5732f809f806 303 PIRSF PIRSF001522 1 303 5.6E-118 T 10-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 VF_1246 78c91071a81df2dd36be5732f809f806 303 Pfam PF01278 Omptin family 23 303 3.7E-109 T 10-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 VF_1246 78c91071a81df2dd36be5732f809f806 303 PRINTS PR00482 Omptin serine protease signature 75 100 4.4E-32 T 10-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 VF_1246 78c91071a81df2dd36be5732f809f806 303 PRINTS PR00482 Omptin serine protease signature 107 134 4.4E-32 T 10-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 VF_1246 78c91071a81df2dd36be5732f809f806 303 PRINTS PR00482 Omptin serine protease signature 30 44 4.4E-32 T 10-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 VF_1246 78c91071a81df2dd36be5732f809f806 303 PRINTS PR00482 Omptin serine protease signature 247 267 4.4E-32 T 10-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 VF_1246 78c91071a81df2dd36be5732f809f806 303 PRINTS PR00482 Omptin serine protease signature 199 220 4.4E-32 T 10-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 VF_1246 78c91071a81df2dd36be5732f809f806 303 PRINTS PR00482 Omptin serine protease signature 135 162 4.4E-32 T 10-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 VF_1246 78c91071a81df2dd36be5732f809f806 303 PRINTS PR00482 Omptin serine protease signature 177 198 4.4E-32 T 10-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 VF_1246 78c91071a81df2dd36be5732f809f806 303 Gene3D G3DSA:2.40.128.90 15 303 9.2E-92 T 10-10-2018 VF_1246 78c91071a81df2dd36be5732f809f806 303 SUPERFAMILY SSF69917 17 303 6.02E-89 T 10-10-2018 IPR020080 Outer membrane adhesin/peptidase omptin GO:0004190 VF_2189 c9585e3a91f10bc88cb2cb56cab5ab32 182 SUPERFAMILY SSF52540 1 179 3.52E-39 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2189 c9585e3a91f10bc88cb2cb56cab5ab32 182 Gene3D G3DSA:3.40.50.300 1 181 3.2E-61 T 10-10-2018 VF_2189 c9585e3a91f10bc88cb2cb56cab5ab32 182 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 180 23.733 T 10-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 VF_2189 c9585e3a91f10bc88cb2cb56cab5ab32 182 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 180 1.0E-65 T 10-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 VF_2189 c9585e3a91f10bc88cb2cb56cab5ab32 182 Pfam PF01121 Dephospho-CoA kinase 3 180 1.0E-70 T 10-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 VF_A0785 256c1f326899318a4a1c01dd25e81e24 299 SMART SM00342 28 111 2.1E-24 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0785 256c1f326899318a4a1c01dd25e81e24 299 Gene3D G3DSA:1.10.10.60 65 122 1.1E-12 T 10-10-2018 VF_A0785 256c1f326899318a4a1c01dd25e81e24 299 SUPERFAMILY SSF46689 65 115 1.75E-9 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0785 256c1f326899318a4a1c01dd25e81e24 299 SMART SM00871 138 297 1.2E-16 T 10-10-2018 IPR010499 Bacterial transcription activator, effector binding VF_A0785 256c1f326899318a4a1c01dd25e81e24 299 Gene3D G3DSA:3.20.80.10 140 299 3.0E-29 T 10-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VF_A0785 256c1f326899318a4a1c01dd25e81e24 299 SUPERFAMILY SSF55136 140 297 4.19E-22 T 10-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VF_A0785 256c1f326899318a4a1c01dd25e81e24 299 Pfam PF14526 Integron-associated effector binding protein 141 296 1.2E-16 T 10-10-2018 IPR029441 Integron-associated effector binding protein VF_A0785 256c1f326899318a4a1c01dd25e81e24 299 Gene3D G3DSA:1.10.10.60 6 64 2.7E-19 T 10-10-2018 VF_A0785 256c1f326899318a4a1c01dd25e81e24 299 Pfam PF12833 Helix-turn-helix domain 34 113 1.3E-19 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0785 256c1f326899318a4a1c01dd25e81e24 299 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 80 95 5.7E-5 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_A0785 256c1f326899318a4a1c01dd25e81e24 299 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 95 111 5.7E-5 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_A0785 256c1f326899318a4a1c01dd25e81e24 299 SUPERFAMILY SSF46689 12 62 4.93E-9 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A1092 69e806d3e30b7a1ca666ebefa4934e7f 221 Pfam PF12710 haloacid dehalogenase-like hydrolase 7 188 5.2E-27 T 10-10-2018 VF_A1092 69e806d3e30b7a1ca666ebefa4934e7f 221 Gene3D G3DSA:3.40.50.1000 6 216 1.5E-53 T 10-10-2018 IPR023214 HAD superfamily VF_A1092 69e806d3e30b7a1ca666ebefa4934e7f 221 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 5 203 3.2E-53 T 10-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like VF_A1092 69e806d3e30b7a1ca666ebefa4934e7f 221 SUPERFAMILY SSF56784 4 201 8.68E-29 T 10-10-2018 IPR036412 HAD-like superfamily VF_A1092 69e806d3e30b7a1ca666ebefa4934e7f 221 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 5 190 1.2E-24 T 10-10-2018 VF_A1092 69e806d3e30b7a1ca666ebefa4934e7f 221 Gene3D G3DSA:1.20.1440.100 17 90 1.5E-53 T 10-10-2018 VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 SUPERFAMILY SSF50447 205 301 2.36E-29 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 393 4.5E-229 T 10-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 1.1E-16 T 10-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 Gene3D G3DSA:2.40.30.10 338 393 2.0E-29 T 10-10-2018 VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 3.2E-58 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 SUPERFAMILY SSF50465 302 394 1.99E-35 T 10-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.9E-33 T 10-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 Gene3D G3DSA:3.40.50.300 1 203 2.4E-70 T 10-10-2018 VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 59.267 T 10-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 4.5E-14 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 10-10-2018 IPR031157 Tr-type G domain, conserved site VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 SUPERFAMILY SSF52540 6 219 1.29E-60 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 7.0E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 7.0E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 7.0E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 7.0E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 7.0E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VF_0233 bf4f9562f2d43952ce5c9d253cecd3e5 394 Gene3D G3DSA:2.40.30.10 206 334 1.8E-51 T 10-10-2018 VF_1973 dc991160dce8750aef52457ab7f288a3 534 Gene3D G3DSA:1.20.1220.12 414 534 2.2E-49 T 10-10-2018 VF_1973 dc991160dce8750aef52457ab7f288a3 534 Pfam PF01274 Malate synthase 14 534 4.1E-201 T 10-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 VF_1973 dc991160dce8750aef52457ab7f288a3 534 PIRSF PIRSF001363 3 534 1.4E-245 T 10-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 VF_1973 dc991160dce8750aef52457ab7f288a3 534 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 25 534 5.4E-251 T 10-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 VF_1973 dc991160dce8750aef52457ab7f288a3 534 SUPERFAMILY SSF51645 9 534 6.15E-186 T 10-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 VF_1973 dc991160dce8750aef52457ab7f288a3 534 Gene3D G3DSA:3.20.20.360 4 413 1.7E-187 T 10-10-2018 VF_1973 dc991160dce8750aef52457ab7f288a3 534 ProSitePatterns PS00510 Malate synthase signature. 268 283 - T 10-10-2018 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 VF_2057 abaa5ffa4bc7da1718df86807172611e 712 SUPERFAMILY SSF55904 568 708 3.4E-42 T 10-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 VF_2057 abaa5ffa4bc7da1718df86807172611e 712 SUPERFAMILY SSF53383 130 561 7.46E-109 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_2057 abaa5ffa4bc7da1718df86807172611e 712 Gene3D G3DSA:3.90.100.10 595 712 1.9E-44 T 10-10-2018 VF_2057 abaa5ffa4bc7da1718df86807172611e 712 Gene3D G3DSA:3.40.640.10 130 424 3.9E-92 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_2057 abaa5ffa4bc7da1718df86807172611e 712 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 362 376 - T 10-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 VF_2057 abaa5ffa4bc7da1718df86807172611e 712 PIRSF PIRSF009393 1 712 7.6E-288 T 10-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 VF_2057 abaa5ffa4bc7da1718df86807172611e 712 Gene3D G3DSA:3.90.1150.10 425 594 5.0E-71 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_2057 abaa5ffa4bc7da1718df86807172611e 712 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 130 545 7.6E-190 T 10-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 VF_2057 abaa5ffa4bc7da1718df86807172611e 712 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 14 124 6.0E-30 T 10-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 VF_2057 abaa5ffa4bc7da1718df86807172611e 712 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 570 700 1.4E-44 T 10-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 VF_2057 abaa5ffa4bc7da1718df86807172611e 712 Gene3D G3DSA:3.40.50.2300 1 129 6.5E-52 T 10-10-2018 VF_2557 91aa0e16faaa9702228a85adbab7643f 81 Gene3D G3DSA:3.30.70.260 1 80 8.6E-12 T 10-10-2018 VF_2557 91aa0e16faaa9702228a85adbab7643f 81 SUPERFAMILY SSF55021 3 74 4.12E-11 T 10-10-2018 VF_2557 91aa0e16faaa9702228a85adbab7643f 81 Pfam PF13710 ACT domain 12 73 6.4E-22 T 10-10-2018 VF_A1000 085424f4fa867ace7aedd2a62d22a74c 145 Gene3D G3DSA:3.40.50.510 1 140 1.6E-36 T 10-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 VF_A1000 085424f4fa867ace7aedd2a62d22a74c 145 Pfam PF03610 PTS system fructose IIA component 3 115 3.2E-29 T 10-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 VF_A1000 085424f4fa867ace7aedd2a62d22a74c 145 SUPERFAMILY SSF53062 1 125 2.62E-35 T 10-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 VF_0453 c5809e677e4fe9724dd65d2907aef3d6 501 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 15 500 43.151 T 10-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VF_0453 c5809e677e4fe9724dd65d2907aef3d6 501 SUPERFAMILY SSF50249 7 145 1.64E-32 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_0453 c5809e677e4fe9724dd65d2907aef3d6 501 Pfam PF00152 tRNA synthetases class II (D, K and N) 152 497 1.5E-81 T 10-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0453 c5809e677e4fe9724dd65d2907aef3d6 501 Gene3D G3DSA:3.30.930.10 148 501 2.1E-131 T 10-10-2018 VF_0453 c5809e677e4fe9724dd65d2907aef3d6 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 205 221 5.7E-39 T 10-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VF_0453 c5809e677e4fe9724dd65d2907aef3d6 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 382 398 5.7E-39 T 10-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VF_0453 c5809e677e4fe9724dd65d2907aef3d6 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 252 269 5.7E-39 T 10-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VF_0453 c5809e677e4fe9724dd65d2907aef3d6 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 189 199 5.7E-39 T 10-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VF_0453 c5809e677e4fe9724dd65d2907aef3d6 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 234 247 5.7E-39 T 10-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VF_0453 c5809e677e4fe9724dd65d2907aef3d6 501 Gene3D G3DSA:2.40.50.140 2 147 3.9E-27 T 10-10-2018 VF_0453 c5809e677e4fe9724dd65d2907aef3d6 501 SUPERFAMILY SSF55681 152 498 8.48E-120 T 10-10-2018 VF_0453 c5809e677e4fe9724dd65d2907aef3d6 501 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 10 500 1.2E-200 T 10-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 Gene3D G3DSA:3.50.50.60 149 270 1.7E-122 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 Gene3D G3DSA:3.30.390.30 345 466 5.3E-44 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 42 52 - T 10-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 8 459 5.2E-150 T 10-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 327 1.6E-63 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 SUPERFAMILY SSF51905 6 367 1.02E-58 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 454 1.6E-34 T 10-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 Gene3D G3DSA:3.50.50.60 9 331 1.7E-122 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 3.0E-68 T 10-10-2018 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 3.0E-68 T 10-10-2018 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 140 149 3.0E-68 T 10-10-2018 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 429 449 3.0E-68 T 10-10-2018 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 176 201 3.0E-68 T 10-10-2018 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 3.0E-68 T 10-10-2018 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 278 3.0E-68 T 10-10-2018 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 307 314 3.0E-68 T 10-10-2018 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 3.0E-68 T 10-10-2018 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 SUPERFAMILY SSF55424 342 465 3.26E-38 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PIRSF PIRSF000350 1 467 2.0E-84 T 10-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 176 194 4.4E-39 T 10-10-2018 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 292 314 4.4E-39 T 10-10-2018 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 263 279 4.4E-39 T 10-10-2018 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 137 155 4.4E-39 T 10-10-2018 VF_2178 42c11b1a1ef75d0a8d0e4c7b5419fda0 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 4.4E-39 T 10-10-2018 VF_0917 acd66f4ce22c6679c117e4d64de461ac 286 PRINTS PR00169 Potassium channel signature 87 107 1.2E-35 T 10-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VF_0917 acd66f4ce22c6679c117e4d64de461ac 286 PRINTS PR00169 Potassium channel signature 181 203 1.2E-35 T 10-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VF_0917 acd66f4ce22c6679c117e4d64de461ac 286 PRINTS PR00169 Potassium channel signature 61 84 1.2E-35 T 10-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VF_0917 acd66f4ce22c6679c117e4d64de461ac 286 PRINTS PR00169 Potassium channel signature 19 47 1.2E-35 T 10-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VF_0917 acd66f4ce22c6679c117e4d64de461ac 286 PRINTS PR00169 Potassium channel signature 152 175 1.2E-35 T 10-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VF_0917 acd66f4ce22c6679c117e4d64de461ac 286 PRINTS PR00169 Potassium channel signature 123 149 1.2E-35 T 10-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VF_0917 acd66f4ce22c6679c117e4d64de461ac 286 PRINTS PR00169 Potassium channel signature 210 236 1.2E-35 T 10-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VF_0917 acd66f4ce22c6679c117e4d64de461ac 286 Gene3D G3DSA:1.10.287.70 26 239 1.4E-57 T 10-10-2018 VF_0917 acd66f4ce22c6679c117e4d64de461ac 286 Pfam PF00520 Ion transport protein 28 238 1.0E-30 T 10-10-2018 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 VF_0917 acd66f4ce22c6679c117e4d64de461ac 286 SUPERFAMILY SSF81324 26 238 8.64E-52 T 10-10-2018 VF_A0595 cf1dab36a86848dbd328f4e505e66e9b 68 Pfam PF00313 'Cold-shock' DNA-binding domain 5 67 3.2E-30 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_A0595 cf1dab36a86848dbd328f4e505e66e9b 68 SUPERFAMILY SSF50249 4 67 3.05E-24 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_A0595 cf1dab36a86848dbd328f4e505e66e9b 68 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 35 - T 10-10-2018 IPR019844 Cold-shock conserved site VF_A0595 cf1dab36a86848dbd328f4e505e66e9b 68 PIRSF PIRSF002599 1 68 1.0E-24 T 10-10-2018 IPR012156 Cold shock, CspA GO:0003676 VF_A0595 cf1dab36a86848dbd328f4e505e66e9b 68 PRINTS PR00050 Cold shock protein signature 26 35 1.8E-17 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_A0595 cf1dab36a86848dbd328f4e505e66e9b 68 PRINTS PR00050 Cold shock protein signature 6 21 1.8E-17 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_A0595 cf1dab36a86848dbd328f4e505e66e9b 68 PRINTS PR00050 Cold shock protein signature 41 59 1.8E-17 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_A0595 cf1dab36a86848dbd328f4e505e66e9b 68 SMART SM00357 5 68 6.4E-32 T 10-10-2018 IPR011129 Cold shock domain GO:0003676 VF_A0595 cf1dab36a86848dbd328f4e505e66e9b 68 Gene3D G3DSA:2.40.50.140 4 66 4.2E-30 T 10-10-2018 VF_A0502 f6f02a74e45f89390835f8b81072b48e 208 PRINTS PR01021 OMPA domain signature 133 148 7.7E-8 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A0502 f6f02a74e45f89390835f8b81072b48e 208 PRINTS PR01021 OMPA domain signature 103 125 7.7E-8 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A0502 f6f02a74e45f89390835f8b81072b48e 208 PRINTS PR01021 OMPA domain signature 148 164 7.7E-8 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A0502 f6f02a74e45f89390835f8b81072b48e 208 Gene3D G3DSA:3.30.1330.60 63 207 6.6E-35 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A0502 f6f02a74e45f89390835f8b81072b48e 208 Pfam PF00691 OmpA family 103 197 6.3E-16 T 10-10-2018 IPR006665 OmpA-like domain VF_A0502 f6f02a74e45f89390835f8b81072b48e 208 SUPERFAMILY SSF103088 76 203 2.88E-31 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_0763 d55d808ca53d0ffe6616d4239c35759e 156 SUPERFAMILY SSF53178 4 154 1.24E-49 T 10-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 VF_0763 d55d808ca53d0ffe6616d4239c35759e 156 Pfam PF01195 Peptidyl-tRNA hydrolase 19 150 1.6E-39 T 10-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 VF_0763 d55d808ca53d0ffe6616d4239c35759e 156 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 2 151 3.1E-49 T 10-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 VF_0763 d55d808ca53d0ffe6616d4239c35759e 156 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 72 82 - T 10-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 VF_0763 d55d808ca53d0ffe6616d4239c35759e 156 Gene3D G3DSA:3.40.50.1470 1 156 1.5E-54 T 10-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 VF_1868 8d6362903656c265df94374f6e14ad71 626 SUPERFAMILY SSF64518 167 625 4.84E-28 T 10-10-2018 VF_1868 8d6362903656c265df94374f6e14ad71 626 Pfam PF00460 Flagella basal body rod protein 15 35 9.5E-5 T 10-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VF_1868 8d6362903656c265df94374f6e14ad71 626 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 5 328 1.5E-56 T 10-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VF_1868 8d6362903656c265df94374f6e14ad71 626 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 578 625 1.5E-10 T 10-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VF_1868 8d6362903656c265df94374f6e14ad71 626 PRINTS PR01005 Flagellar hook-associated protein signature 158 182 1.8E-12 T 10-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VF_1868 8d6362903656c265df94374f6e14ad71 626 PRINTS PR01005 Flagellar hook-associated protein signature 360 382 1.8E-12 T 10-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VF_1868 8d6362903656c265df94374f6e14ad71 626 PRINTS PR01005 Flagellar hook-associated protein signature 12 35 1.8E-12 T 10-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VF_1868 8d6362903656c265df94374f6e14ad71 626 PRINTS PR01005 Flagellar hook-associated protein signature 50 72 1.8E-12 T 10-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VF_1876 a96ec2d0328aafcacf9f6a97cbc70deb 138 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 10-10-2018 IPR019776 Flagellar basal body rod protein, conserved site VF_1876 a96ec2d0328aafcacf9f6a97cbc70deb 138 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 138 4.9E-50 T 10-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 VF_1876 a96ec2d0328aafcacf9f6a97cbc70deb 138 Pfam PF00460 Flagella basal body rod protein 7 32 5.4E-6 T 10-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VF_1876 a96ec2d0328aafcacf9f6a97cbc70deb 138 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 92 136 1.9E-12 T 10-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VF_2197 5befa84dd974103b328985c0884262b4 420 PIRSF PIRSF003101 1 420 4.6E-146 T 10-10-2018 IPR020823 Cell division protein FtsA VF_2197 5befa84dd974103b328985c0884262b4 420 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 3.1E-149 T 10-10-2018 IPR020823 Cell division protein FtsA VF_2197 5befa84dd974103b328985c0884262b4 420 SMART SM00842 10 196 2.6E-94 T 10-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 VF_2197 5befa84dd974103b328985c0884262b4 420 SUPERFAMILY SSF53067 9 221 2.94E-59 T 10-10-2018 VF_2197 5befa84dd974103b328985c0884262b4 420 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 420 29.254 T 10-10-2018 IPR020823 Cell division protein FtsA VF_2197 5befa84dd974103b328985c0884262b4 420 SUPERFAMILY SSF53067 198 384 3.46E-47 T 10-10-2018 VF_2197 5befa84dd974103b328985c0884262b4 420 Pfam PF14450 Cell division protein FtsA 207 381 7.8E-26 T 10-10-2018 VF_2197 5befa84dd974103b328985c0884262b4 420 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 4.7E-27 T 10-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 VF_2197 5befa84dd974103b328985c0884262b4 420 Gene3D G3DSA:3.90.640.10 235 300 2.1E-112 T 10-10-2018 VF_2197 5befa84dd974103b328985c0884262b4 420 Gene3D G3DSA:3.30.420.40 13 378 2.1E-112 T 10-10-2018 VF_2197 5befa84dd974103b328985c0884262b4 420 Gene3D G3DSA:3.30.420.40 197 359 2.1E-112 T 10-10-2018 VF_2197 5befa84dd974103b328985c0884262b4 420 Gene3D G3DSA:3.30.1490.110 87 169 2.1E-112 T 10-10-2018 VF_1279 38ddf5f51ed6517b5c04edc8abc19e7d 208 Gene3D G3DSA:1.10.1710.10 1 119 4.1E-23 T 10-10-2018 IPR036442 ProQ/FinO domain superfamily VF_1279 38ddf5f51ed6517b5c04edc8abc19e7d 208 Pfam PF04352 ProQ/FINO family 8 115 4.2E-42 T 10-10-2018 IPR016103 ProQ/FinO domain VF_1279 38ddf5f51ed6517b5c04edc8abc19e7d 208 Hamap MF_00749 RNA chaperone ProQ [proQ]. 3 208 29.342 T 10-10-2018 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 VF_1279 38ddf5f51ed6517b5c04edc8abc19e7d 208 Pfam PF17516 ProQ C-terminal domain 159 207 3.2E-21 T 10-10-2018 IPR035236 RNA chaperone ProQ, C-terminal VF_1279 38ddf5f51ed6517b5c04edc8abc19e7d 208 SUPERFAMILY SSF48657 6 118 2.62E-38 T 10-10-2018 IPR036442 ProQ/FinO domain superfamily VF_1279 38ddf5f51ed6517b5c04edc8abc19e7d 208 SMART SM00945 5 119 2.9E-61 T 10-10-2018 IPR016103 ProQ/FinO domain VF_A1160 de0ffd4bd31aefafb509022ddec53763 302 SUPERFAMILY SSF46785 3 87 1.04E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A1160 de0ffd4bd31aefafb509022ddec53763 302 Gene3D G3DSA:3.40.190.10 167 267 2.3E-12 T 10-10-2018 VF_A1160 de0ffd4bd31aefafb509022ddec53763 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 2.0E-14 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1160 de0ffd4bd31aefafb509022ddec53763 302 Gene3D G3DSA:3.40.190.10 108 276 2.3E-12 T 10-10-2018 VF_A1160 de0ffd4bd31aefafb509022ddec53763 302 Gene3D G3DSA:1.10.10.10 1 89 1.3E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1160 de0ffd4bd31aefafb509022ddec53763 302 Pfam PF03466 LysR substrate binding domain 89 290 2.0E-24 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A1160 de0ffd4bd31aefafb509022ddec53763 302 SUPERFAMILY SSF53850 89 290 4.81E-28 T 10-10-2018 VF_1063 7ae1fe81d254bf0c26b175920183ddb2 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 5.2E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1063 7ae1fe81d254bf0c26b175920183ddb2 298 SUPERFAMILY SSF53850 91 293 9.31E-26 T 10-10-2018 VF_1063 7ae1fe81d254bf0c26b175920183ddb2 298 Gene3D G3DSA:1.10.10.10 1 84 4.2E-18 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1063 7ae1fe81d254bf0c26b175920183ddb2 298 SUPERFAMILY SSF46785 3 108 1.68E-16 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1063 7ae1fe81d254bf0c26b175920183ddb2 298 Gene3D G3DSA:3.40.190.290 91 296 1.8E-23 T 10-10-2018 VF_1063 7ae1fe81d254bf0c26b175920183ddb2 298 Pfam PF03466 LysR substrate binding domain 90 291 1.0E-25 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0431 58c3a175bb68487e7d0f3b380df631d5 245 Hamap MF_01802 Chromosome partition protein MukE [mukE]. 10 240 47.316 T 10-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 VF_A0431 58c3a175bb68487e7d0f3b380df631d5 245 Pfam PF04288 MukE-like family 10 235 2.0E-114 T 10-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 VF_A0431 58c3a175bb68487e7d0f3b380df631d5 245 Gene3D G3DSA:1.10.10.2260 88 194 1.7E-46 T 10-10-2018 VF_A0431 58c3a175bb68487e7d0f3b380df631d5 245 Gene3D G3DSA:1.10.10.2250 1 78 1.1E-34 T 10-10-2018 VF_2017 7eb871d76d9d0305009203c45d78d72f 129 Gene3D G3DSA:3.30.1380.10 3 128 2.9E-12 T 10-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VF_2017 7eb871d76d9d0305009203c45d78d72f 129 SUPERFAMILY SSF55166 5 128 1.33E-11 T 10-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VF_0516 fb2d45980f7d55bb603b5bbdbd8b0b46 429 Gene3D G3DSA:3.30.450.380 1 166 3.5E-39 T 10-10-2018 VF_0516 fb2d45980f7d55bb603b5bbdbd8b0b46 429 Gene3D G3DSA:3.40.50.300 168 420 5.0E-74 T 10-10-2018 VF_0516 fb2d45980f7d55bb603b5bbdbd8b0b46 429 SUPERFAMILY SSF52540 52 362 1.81E-61 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0516 fb2d45980f7d55bb603b5bbdbd8b0b46 429 SMART SM00382 195 349 0.0056 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0516 fb2d45980f7d55bb603b5bbdbd8b0b46 429 Pfam PF00437 Type II/IV secretion system protein 71 347 3.5E-81 T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_0253 1008cf66ed777ea0215d95d753e01861 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 25.001 T 10-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0253 1008cf66ed777ea0215d95d753e01861 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 1.7E-42 T 10-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0253 1008cf66ed777ea0215d95d753e01861 117 Gene3D G3DSA:3.30.420.100 1 117 1.9E-43 T 10-10-2018 VF_0253 1008cf66ed777ea0215d95d753e01861 117 SUPERFAMILY SSF53137 3 115 1.61E-52 T 10-10-2018 VF_0253 1008cf66ed777ea0215d95d753e01861 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 5.7E-43 T 10-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_B0052 69ba9f7ba3cec85cf7694ef0f1c33010 232 SUPERFAMILY SSF52540 1 179 3.04E-8 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_B0052 69ba9f7ba3cec85cf7694ef0f1c33010 232 Gene3D G3DSA:3.40.50.300 3 205 3.5E-8 T 10-10-2018 VF_A0875 c932d95b82cd0ddeb1767967af815858 208 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 1.6E-6 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_A0875 c932d95b82cd0ddeb1767967af815858 208 Gene3D G3DSA:3.30.1690.10 37 206 5.7E-54 T 10-10-2018 VF_A0875 c932d95b82cd0ddeb1767967af815858 208 SUPERFAMILY SSF54523 37 207 3.14E-59 T 10-10-2018 VF_A0875 c932d95b82cd0ddeb1767967af815858 208 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_A0875 c932d95b82cd0ddeb1767967af815858 208 Pfam PF05946 Toxin-coregulated pilus subunit TcpA 81 206 1.0E-71 T 10-10-2018 IPR010271 Toxin-coregulated pilus subunit TcpA GO:0009289|GO:0009405|GO:0043230 VF_A0875 c932d95b82cd0ddeb1767967af815858 208 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 28 1.4E-7 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_A0876 040db9b4e4747d2fcf058e73ddce58a7 257 Pfam PF12833 Helix-turn-helix domain 177 255 3.9E-11 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0876 040db9b4e4747d2fcf058e73ddce58a7 257 SMART SM00342 171 254 2.2E-8 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0876 040db9b4e4747d2fcf058e73ddce58a7 257 Gene3D G3DSA:1.10.10.60 152 257 3.9E-16 T 10-10-2018 VF_0790 14908fca94f10b3ec72c0472b598d2fb 181 ProDom PD016359 TRANSMEMBRANE TOXS REGULATORY MEMBRANE PERIPLASMIC 26 179 6.0E-86 T 10-10-2018 IPR035288 Trans-membrane regulatory protein ToxS GO:0016021 VF_0790 14908fca94f10b3ec72c0472b598d2fb 181 Pfam PF17323 Trans-membrane regulatory protein ToxS 31 179 2.0E-64 T 10-10-2018 IPR035288 Trans-membrane regulatory protein ToxS GO:0016021 VF_1504 1bf43a7cb36751d174e3b3ee5bdf4161 653 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 449 617 5.0E-39 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1504 1bf43a7cb36751d174e3b3ee5bdf4161 653 SMART SM00283 390 651 1.6E-61 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1504 1bf43a7cb36751d174e3b3ee5bdf4161 653 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 404 433 9.1E-8 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_1504 1bf43a7cb36751d174e3b3ee5bdf4161 653 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 517 546 9.1E-8 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_1504 1bf43a7cb36751d174e3b3ee5bdf4161 653 SUPERFAMILY SSF58104 346 652 3.49E-64 T 10-10-2018 VF_1504 1bf43a7cb36751d174e3b3ee5bdf4161 653 Gene3D G3DSA:1.10.287.950 322 653 3.4E-62 T 10-10-2018 VF_A0904 aacf820e64c9f017d78823c649576338 591 Gene3D G3DSA:3.40.50.410 102 293 5.9E-24 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_A0904 aacf820e64c9f017d78823c649576338 591 SUPERFAMILY SSF48452 372 506 2.61E-7 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0904 aacf820e64c9f017d78823c649576338 591 SUPERFAMILY SSF53300 104 282 1.39E-18 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_A0904 aacf820e64c9f017d78823c649576338 591 Gene3D G3DSA:1.25.40.10 346 575 6.3E-7 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0904 aacf820e64c9f017d78823c649576338 591 Pfam PF13519 von Willebrand factor type A domain 107 218 2.4E-13 T 10-10-2018 IPR002035 von Willebrand factor, type A VF_A1181 bc7aeff5ee7b9b7bd96618f65912d794 50 Gene3D G3DSA:2.20.25.10 1 42 6.6E-6 T 10-10-2018 VF_A1181 bc7aeff5ee7b9b7bd96618f65912d794 50 SUPERFAMILY SSF57783 2 38 1.25E-7 T 10-10-2018 VF_1059 bd892b63633c304768543e21841500db 555 SUPERFAMILY SSF51055 7 71 8.63E-11 T 10-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1059 bd892b63633c304768543e21841500db 555 SMART SM00495 21 70 3.0E-5 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1059 bd892b63633c304768543e21841500db 555 SMART SM00495 97 148 2.7E-4 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1059 bd892b63633c304768543e21841500db 555 Gene3D G3DSA:2.10.10.20 5 74 8.0E-10 T 10-10-2018 VF_1059 bd892b63633c304768543e21841500db 555 SUPERFAMILY SSF53955 231 491 2.05E-64 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_1059 bd892b63633c304768543e21841500db 555 Gene3D G3DSA:1.10.530.10 242 488 6.8E-84 T 10-10-2018 VF_1059 bd892b63633c304768543e21841500db 555 Gene3D G3DSA:3.30.20.10 320 395 6.8E-84 T 10-10-2018 VF_1059 bd892b63633c304768543e21841500db 555 Pfam PF00182 Chitinase class I 251 478 1.8E-38 T 10-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VF_A0590 ce90d861c578b656a704d7b2f3a5a7ea 374 Pfam PF12698 ABC-2 family transporter protein 19 370 3.6E-37 T 10-10-2018 VF_0678 44843d949fc8dbc27e6fa603eed56862 250 Gene3D G3DSA:3.40.50.300 6 249 4.3E-46 T 10-10-2018 VF_0678 44843d949fc8dbc27e6fa603eed56862 250 Pfam PF00005 ABC transporter 27 164 9.6E-22 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0678 44843d949fc8dbc27e6fa603eed56862 250 SUPERFAMILY SSF52540 8 214 1.38E-38 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0678 44843d949fc8dbc27e6fa603eed56862 250 SMART SM00382 35 214 2.3E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0001 085aa61569dbd1e7c2d458aa76959592 144 Pfam PF00258 Flavodoxin 6 138 3.7E-24 T 10-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 VF_0001 085aa61569dbd1e7c2d458aa76959592 144 Gene3D G3DSA:3.40.50.360 1 144 2.4E-42 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_0001 085aa61569dbd1e7c2d458aa76959592 144 SUPERFAMILY SSF52218 1 141 1.35E-38 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_2484 5c168a5ed2cc3424d365ce23f4230152 276 Gene3D G3DSA:3.10.310.10 5 272 6.1E-105 T 10-10-2018 VF_2484 5c168a5ed2cc3424d365ce23f4230152 276 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 275 8.9E-99 T 10-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VF_2484 5c168a5ed2cc3424d365ce23f4230152 276 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 10-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VF_2484 5c168a5ed2cc3424d365ce23f4230152 276 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 276 38.899 T 10-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VF_2484 5c168a5ed2cc3424d365ce23f4230152 276 Gene3D G3DSA:3.10.310.10 117 263 6.1E-105 T 10-10-2018 VF_2484 5c168a5ed2cc3424d365ce23f4230152 276 Pfam PF01678 Diaminopimelate epimerase 154 269 9.0E-29 T 10-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VF_2484 5c168a5ed2cc3424d365ce23f4230152 276 Pfam PF01678 Diaminopimelate epimerase 5 125 2.7E-34 T 10-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VF_2484 5c168a5ed2cc3424d365ce23f4230152 276 SUPERFAMILY SSF54506 2 275 2.49E-53 T 10-10-2018 VF_A0400 d09826024f70ccbe8ebaf5ccb287714e 326 Gene3D G3DSA:3.40.50.1360 60 326 1.9E-90 T 10-10-2018 VF_A0400 d09826024f70ccbe8ebaf5ccb287714e 326 SUPERFAMILY SSF100950 69 320 7.67E-64 T 10-10-2018 IPR037171 NagB/RpiA transferase-like VF_A0400 d09826024f70ccbe8ebaf5ccb287714e 326 Pfam PF13412 Winged helix-turn-helix DNA-binding 21 58 2.2E-5 T 10-10-2018 VF_A0400 d09826024f70ccbe8ebaf5ccb287714e 326 Gene3D G3DSA:1.10.10.60 7 59 1.3E-20 T 10-10-2018 VF_A0400 d09826024f70ccbe8ebaf5ccb287714e 326 Pfam PF04198 Putative sugar-binding domain 68 320 3.0E-69 T 10-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 VF_0429 fec282e128c52e9343b3b58d77b9768e 272 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 268 1.7E-73 T 10-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VF_0429 fec282e128c52e9343b3b58d77b9768e 272 PIRSF PIRSF000193 3 270 1.8E-73 T 10-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VF_0429 fec282e128c52e9343b3b58d77b9768e 272 SUPERFAMILY SSF51735 4 160 3.3E-39 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0429 fec282e128c52e9343b3b58d77b9768e 272 SUPERFAMILY SSF48179 163 270 9.52E-30 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VF_0429 fec282e128c52e9343b3b58d77b9768e 272 Gene3D G3DSA:1.10.3730.10 165 272 2.4E-34 T 10-10-2018 VF_0429 fec282e128c52e9343b3b58d77b9768e 272 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 163 268 1.9E-30 T 10-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VF_0429 fec282e128c52e9343b3b58d77b9768e 272 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 268 25.74 T 10-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VF_0429 fec282e128c52e9343b3b58d77b9768e 272 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 224 246 - T 10-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VF_0429 fec282e128c52e9343b3b58d77b9768e 272 Gene3D G3DSA:3.40.50.720 2 164 2.0E-50 T 10-10-2018 VF_0429 fec282e128c52e9343b3b58d77b9768e 272 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 6 99 8.7E-24 T 10-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal VF_A0095 879c338e346912f8935c4f03e173f528 215 Pfam PF00005 ABC transporter 21 163 5.1E-32 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0095 879c338e346912f8935c4f03e173f528 215 SMART SM00382 28 212 2.6E-7 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0095 879c338e346912f8935c4f03e173f528 215 SUPERFAMILY SSF52540 6 200 1.2E-52 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0095 879c338e346912f8935c4f03e173f528 215 Gene3D G3DSA:3.40.50.300 1 207 3.9E-51 T 10-10-2018 VF_A0162 60a42c42d706612d488cb542cb54397f 303 SUPERFAMILY SSF55729 103 296 2.83E-63 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A0162 60a42c42d706612d488cb542cb54397f 303 Pfam PF13523 Acetyltransferase (GNAT) domain 138 282 8.4E-53 T 10-10-2018 VF_A0162 60a42c42d706612d488cb542cb54397f 303 SMART SM01006 135 182 3.9E-16 T 10-10-2018 IPR019432 Siderophore biosynthesis protein, conserved domain VF_A0162 60a42c42d706612d488cb542cb54397f 303 Gene3D G3DSA:3.40.630.30 99 298 2.8E-66 T 10-10-2018 VF_1666 ea6839fb35062218fd9dc24a87b9d709 466 Pfam PF00501 AMP-binding enzyme 24 367 3.8E-55 T 10-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VF_1666 ea6839fb35062218fd9dc24a87b9d709 466 Gene3D G3DSA:3.40.50.12780 15 364 2.2E-69 T 10-10-2018 VF_1666 ea6839fb35062218fd9dc24a87b9d709 466 Gene3D G3DSA:3.30.300.310 365 462 1.6E-16 T 10-10-2018 VF_1666 ea6839fb35062218fd9dc24a87b9d709 466 SUPERFAMILY SSF56801 22 461 2.35E-93 T 10-10-2018 VF_1666 ea6839fb35062218fd9dc24a87b9d709 466 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 35 454 1.1E-122 T 10-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 VF_1666 ea6839fb35062218fd9dc24a87b9d709 466 ProSitePatterns PS00455 Putative AMP-binding domain signature. 147 158 - T 10-10-2018 IPR020845 AMP-binding, conserved site VF_1666 ea6839fb35062218fd9dc24a87b9d709 466 Pfam PF13193 AMP-binding enzyme C-terminal domain 376 439 1.2E-8 T 10-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VF_0835 77a03cbddf2a7b0a5b61608db38426e7 80 Pfam PF09012 FeoC like transcriptional regulator 2 67 1.3E-21 T 10-10-2018 IPR015102 Transcriptional regulator HTH-type, FeoC VF_0835 77a03cbddf2a7b0a5b61608db38426e7 80 SUPERFAMILY SSF46785 1 71 3.63E-16 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1952 fb605d92362b230add693eb2bbbbe8fc 339 Gene3D G3DSA:3.40.1390.10 1 99 5.0E-32 T 10-10-2018 VF_1952 fb605d92362b230add693eb2bbbbe8fc 339 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 329 1.4E-114 T 10-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 VF_1952 fb605d92362b230add693eb2bbbbe8fc 339 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 23 88 5.0E-21 T 10-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 VF_1952 fb605d92362b230add693eb2bbbbe8fc 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 144 7.9E-7 T 10-10-2018 IPR001451 Hexapeptide repeat VF_1952 fb605d92362b230add693eb2bbbbe8fc 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 258 285 0.0014 T 10-10-2018 IPR001451 Hexapeptide repeat VF_1952 fb605d92362b230add693eb2bbbbe8fc 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 199 216 0.0027 T 10-10-2018 IPR001451 Hexapeptide repeat VF_1952 fb605d92362b230add693eb2bbbbe8fc 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 222 257 2.5E-5 T 10-10-2018 IPR001451 Hexapeptide repeat VF_1952 fb605d92362b230add693eb2bbbbe8fc 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 146 179 3.5E-7 T 10-10-2018 IPR001451 Hexapeptide repeat VF_1952 fb605d92362b230add693eb2bbbbe8fc 339 Gene3D G3DSA:2.160.10.10 100 308 2.4E-63 T 10-10-2018 VF_1952 fb605d92362b230add693eb2bbbbe8fc 339 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 5 326 35.125 T 10-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 VF_1952 fb605d92362b230add693eb2bbbbe8fc 339 SUPERFAMILY SSF51161 32 316 2.84E-86 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_1470 1e601f1c8179ecf736bc0de8975e6d8f 439 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 4 103 8.9E-28 T 10-10-2018 IPR017508 HipA, N-terminal subdomain 1 VF_1470 1e601f1c8179ecf736bc0de8975e6d8f 439 Pfam PF07804 HipA-like C-terminal domain 149 402 1.2E-54 T 10-10-2018 IPR012893 HipA-like, C-terminal VF_1470 1e601f1c8179ecf736bc0de8975e6d8f 439 Pfam PF13657 HipA N-terminal domain 6 103 2.4E-20 T 10-10-2018 IPR017508 HipA, N-terminal subdomain 1 VF_A0291 832436e85125681794ccf31109d9a4fd 229 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 12 220 2.5E-73 T 10-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 VF_A0291 832436e85125681794ccf31109d9a4fd 229 SUPERFAMILY SSF161098 8 217 2.75E-52 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0291 832436e85125681794ccf31109d9a4fd 229 Gene3D G3DSA:1.10.3720.10 2 226 6.1E-63 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0291 832436e85125681794ccf31109d9a4fd 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 27 216 1.1E-24 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_2504 c3b77baf9440bd3593dff3c4179f7fa8 98 TIGRFAM TIGR03578 EF_0831: conserved hypothetical protein EF_0831/AHA_3912 2 96 2.8E-45 T 10-10-2018 IPR020037 Protein of unknown function DUF4312 VF_2504 c3b77baf9440bd3593dff3c4179f7fa8 98 Pfam PF14189 Domain of unknown function (DUF4312) 6 88 8.5E-37 T 10-10-2018 IPR020037 Protein of unknown function DUF4312 VF_A0456 cc85b2e372f5ba2e25181a8ff6e6a440 157 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 66 154 4.3E-26 T 10-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VF_A0456 cc85b2e372f5ba2e25181a8ff6e6a440 157 SUPERFAMILY SSF54534 19 157 6.48E-50 T 10-10-2018 VF_A0456 cc85b2e372f5ba2e25181a8ff6e6a440 157 Gene3D G3DSA:3.10.50.40 21 157 1.5E-52 T 10-10-2018 VF_A0456 cc85b2e372f5ba2e25181a8ff6e6a440 157 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 25 59 1.4E-10 T 10-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 VF_1144 cde81483faec486de26d11e2e05eb9b1 431 Pfam PF00270 DEAD/DEAH box helicase 25 195 2.4E-50 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_1144 cde81483faec486de26d11e2e05eb9b1 431 SMART SM00490 258 339 1.8E-31 T 10-10-2018 IPR001650 Helicase, C-terminal VF_1144 cde81483faec486de26d11e2e05eb9b1 431 Gene3D G3DSA:3.40.50.300 1 210 3.7E-74 T 10-10-2018 VF_1144 cde81483faec486de26d11e2e05eb9b1 431 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 10-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VF_1144 cde81483faec486de26d11e2e05eb9b1 431 SUPERFAMILY SSF52540 75 355 6.09E-73 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1144 cde81483faec486de26d11e2e05eb9b1 431 Pfam PF00271 Helicase conserved C-terminal domain 231 339 3.8E-29 T 10-10-2018 IPR001650 Helicase, C-terminal VF_1144 cde81483faec486de26d11e2e05eb9b1 431 SMART SM00487 20 222 6.7E-52 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_1144 cde81483faec486de26d11e2e05eb9b1 431 Gene3D G3DSA:3.40.50.300 212 380 3.6E-49 T 10-10-2018 VF_A0278 cb528642c799d2c6759875063d1943c5 318 Pfam PF03741 Integral membrane protein TerC family 75 278 2.4E-52 T 10-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 VF_A0278 cb528642c799d2c6759875063d1943c5 318 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 2 310 1.1E-109 T 10-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 VF_0083 a099751985ebbc77630a0f5b81f33c3d 141 SUPERFAMILY SSF52402 3 139 4.94E-32 T 10-10-2018 VF_0083 a099751985ebbc77630a0f5b81f33c3d 141 Pfam PF00582 Universal stress protein family 3 138 3.8E-21 T 10-10-2018 IPR006016 UspA VF_0083 a099751985ebbc77630a0f5b81f33c3d 141 PIRSF PIRSF006276 1 141 1.8E-51 T 10-10-2018 IPR006015 Universal stress protein A VF_0083 a099751985ebbc77630a0f5b81f33c3d 141 Gene3D G3DSA:3.40.50.620 2 141 1.5E-47 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_A0086 285fa5da18ff0cb95a518e9426269569 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 487 504 2.3E-66 T 10-10-2018 VF_A0086 285fa5da18ff0cb95a518e9426269569 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 427 445 2.3E-66 T 10-10-2018 VF_A0086 285fa5da18ff0cb95a518e9426269569 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 463 478 2.3E-66 T 10-10-2018 VF_A0086 285fa5da18ff0cb95a518e9426269569 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 405 423 2.3E-66 T 10-10-2018 VF_A0086 285fa5da18ff0cb95a518e9426269569 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 146 164 2.3E-66 T 10-10-2018 VF_A0086 285fa5da18ff0cb95a518e9426269569 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 266 282 2.3E-66 T 10-10-2018 VF_A0086 285fa5da18ff0cb95a518e9426269569 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 296 315 2.3E-66 T 10-10-2018 VF_A0086 285fa5da18ff0cb95a518e9426269569 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 164 183 2.3E-66 T 10-10-2018 VF_A0086 285fa5da18ff0cb95a518e9426269569 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 71 96 2.3E-66 T 10-10-2018 VF_A0086 285fa5da18ff0cb95a518e9426269569 584 Gene3D G3DSA:1.10.246.130 282 406 2.6E-36 T 10-10-2018 VF_A0086 285fa5da18ff0cb95a518e9426269569 584 Gene3D G3DSA:3.60.20.40 407 583 5.3E-59 T 10-10-2018 VF_A0086 285fa5da18ff0cb95a518e9426269569 584 SUPERFAMILY SSF56235 42 582 2.12E-171 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_A0086 285fa5da18ff0cb95a518e9426269569 584 Pfam PF01019 Gamma-glutamyltranspeptidase 64 579 4.1E-158 T 10-10-2018 VF_A0086 285fa5da18ff0cb95a518e9426269569 584 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 50 576 2.3E-132 T 10-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 VF_A0534 7063b9a69bd0f71abd478e7fc1b981b3 56 Pfam PF12728 Helix-turn-helix domain 6 53 4.7E-18 T 10-10-2018 VF_A0534 7063b9a69bd0f71abd478e7fc1b981b3 56 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 6 52 3.1E-14 T 10-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 VF_A0534 7063b9a69bd0f71abd478e7fc1b981b3 56 SUPERFAMILY SSF46955 5 53 9.34E-7 T 10-10-2018 IPR009061 Putative DNA-binding domain superfamily VF_A0534 7063b9a69bd0f71abd478e7fc1b981b3 56 Gene3D G3DSA:1.10.1660.10 2 54 3.6E-7 T 10-10-2018 VF_A0493 37f7d1d52f174af9dc7a935ca95c0c59 331 Gene3D G3DSA:3.20.20.300 1 331 1.3E-123 T 10-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 VF_A0493 37f7d1d52f174af9dc7a935ca95c0c59 331 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 229 246 - T 10-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 VF_A0493 37f7d1d52f174af9dc7a935ca95c0c59 331 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 3 327 44.598 T 10-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VF_A0493 37f7d1d52f174af9dc7a935ca95c0c59 331 SUPERFAMILY SSF51445 2 299 8.42E-87 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_A0493 37f7d1d52f174af9dc7a935ca95c0c59 331 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 9 287 1.5E-83 T 10-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 VF_A0682 0da6955c74e0934ecbc4a636b3b493a4 635 SMART SM00028 395 428 0.0091 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0682 0da6955c74e0934ecbc4a636b3b493a4 635 SUPERFAMILY SSF53300 89 279 2.91E-18 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_A0682 0da6955c74e0934ecbc4a636b3b493a4 635 Pfam PF13519 von Willebrand factor type A domain 89 197 7.2E-15 T 10-10-2018 IPR002035 von Willebrand factor, type A VF_A0682 0da6955c74e0934ecbc4a636b3b493a4 635 SUPERFAMILY SSF48452 350 449 8.68E-9 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0682 0da6955c74e0934ecbc4a636b3b493a4 635 Gene3D G3DSA:1.25.40.10 395 459 7.8E-6 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0682 0da6955c74e0934ecbc4a636b3b493a4 635 Gene3D G3DSA:3.40.50.410 88 285 4.8E-31 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_2339 22f7fedbb7aab9ab4a2b620f99daa852 340 Pfam PF04055 Radical SAM superfamily 118 214 7.0E-9 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_2339 22f7fedbb7aab9ab4a2b620f99daa852 340 Pfam PF13353 4Fe-4S single cluster domain 111 183 3.8E-8 T 10-10-2018 VF_2339 22f7fedbb7aab9ab4a2b620f99daa852 340 PIRSF PIRSF004911 2 340 2.3E-116 T 10-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase VF_2339 22f7fedbb7aab9ab4a2b620f99daa852 340 Gene3D G3DSA:3.20.20.70 51 334 4.4E-91 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_2339 22f7fedbb7aab9ab4a2b620f99daa852 340 SUPERFAMILY SSF102114 103 324 7.59E-26 T 10-10-2018 VF_2339 22f7fedbb7aab9ab4a2b620f99daa852 340 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 16 335 3.3E-158 T 10-10-2018 IPR022462 Lysine-2,3-aminomutase-like VF_2339 22f7fedbb7aab9ab4a2b620f99daa852 340 TIGRFAM TIGR00238 TIGR00238: KamA family protein 7 328 1.4E-129 T 10-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase VF_A0389 8887f22e96d8dd92c17b30f425e0a868 621 Gene3D G3DSA:3.30.450.20 62 171 1.6E-70 T 10-10-2018 VF_A0389 8887f22e96d8dd92c17b30f425e0a868 621 Gene3D G3DSA:1.10.287.950 290 621 6.0E-67 T 10-10-2018 VF_A0389 8887f22e96d8dd92c17b30f425e0a868 621 SMART SM00283 359 620 8.1E-65 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0389 8887f22e96d8dd92c17b30f425e0a868 621 Gene3D G3DSA:3.30.450.20 49 264 1.6E-70 T 10-10-2018 VF_A0389 8887f22e96d8dd92c17b30f425e0a868 621 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 373 402 3.6E-6 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0389 8887f22e96d8dd92c17b30f425e0a868 621 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 486 515 3.6E-6 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0389 8887f22e96d8dd92c17b30f425e0a868 621 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 420 586 4.4E-45 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0389 8887f22e96d8dd92c17b30f425e0a868 621 SUPERFAMILY SSF58104 312 621 1.96E-73 T 10-10-2018 VF_A0389 8887f22e96d8dd92c17b30f425e0a868 621 SMART SM00304 372 446 76.0 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0389 8887f22e96d8dd92c17b30f425e0a868 621 SMART SM00304 290 344 1.1E-8 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0389 8887f22e96d8dd92c17b30f425e0a868 621 Pfam PF02743 Cache domain 28 253 4.8E-28 T 10-10-2018 IPR033479 Double Cache domain 1 VF_A0389 8887f22e96d8dd92c17b30f425e0a868 621 SUPERFAMILY SSF103190 61 182 3.66E-13 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_1917 a806086403dc72d8d8a49bd68e7dbdfe 350 Hamap MF_00924 Outer membrane protein assembly factor BamC [bamC]. 4 337 36.32 T 10-10-2018 IPR014524 Outer membrane protein assembly factor BamC VF_1917 a806086403dc72d8d8a49bd68e7dbdfe 350 Pfam PF06804 NlpB/DapX lipoprotein 35 335 2.2E-102 T 10-10-2018 IPR010653 NlpB/DapX lipoprotein VF_1917 a806086403dc72d8d8a49bd68e7dbdfe 350 Gene3D G3DSA:3.30.310.170 220 345 4.2E-41 T 10-10-2018 VF_1917 a806086403dc72d8d8a49bd68e7dbdfe 350 Gene3D G3DSA:3.30.530.50 96 205 1.5E-15 T 10-10-2018 VF_1917 a806086403dc72d8d8a49bd68e7dbdfe 350 PIRSF PIRSF026343 4 339 2.0E-115 T 10-10-2018 IPR014524 Outer membrane protein assembly factor BamC VF_0493 97e9ee5bbebc187b4999bb4144ef4b7f 333 Pfam PF01136 Peptidase family U32 76 332 7.2E-68 T 10-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VF_0493 97e9ee5bbebc187b4999bb4144ef4b7f 333 ProSitePatterns PS01276 Peptidase family U32 signature. 163 181 - T 10-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VF_0467 195357b629766ebecddb39af83ff290e 952 Gene3D G3DSA:1.10.730.20 655 944 7.7E-87 T 10-10-2018 VF_0467 195357b629766ebecddb39af83ff290e 952 SUPERFAMILY SSF50677 204 411 2.2E-53 T 10-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VF_0467 195357b629766ebecddb39af83ff290e 952 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0467 195357b629766ebecddb39af83ff290e 952 SUPERFAMILY SSF47323 667 943 6.71E-77 T 10-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0467 195357b629766ebecddb39af83ff290e 952 Pfam PF06827 Zinc finger found in FPG and IleRS 914 940 6.5E-6 T 10-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 VF_0467 195357b629766ebecddb39af83ff290e 952 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 943 21.537 T 10-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 VF_0467 195357b629766ebecddb39af83ff290e 952 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 858 2.0E-294 T 10-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VF_0467 195357b629766ebecddb39af83ff290e 952 Gene3D G3DSA:3.90.740.10 195 416 3.9E-241 T 10-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VF_0467 195357b629766ebecddb39af83ff290e 952 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 241 264 8.2E-33 T 10-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VF_0467 195357b629766ebecddb39af83ff290e 952 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 409 424 8.2E-33 T 10-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VF_0467 195357b629766ebecddb39af83ff290e 952 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 535 548 8.2E-33 T 10-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VF_0467 195357b629766ebecddb39af83ff290e 952 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 576 585 8.2E-33 T 10-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VF_0467 195357b629766ebecddb39af83ff290e 952 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 8.2E-33 T 10-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VF_0467 195357b629766ebecddb39af83ff290e 952 SUPERFAMILY SSF52374 3 662 3.03E-140 T 10-10-2018 VF_0467 195357b629766ebecddb39af83ff290e 952 Gene3D G3DSA:3.40.50.620 25 644 3.9E-241 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0467 195357b629766ebecddb39af83ff290e 952 Pfam PF08264 Anticodon-binding domain of tRNA 700 856 7.0E-28 T 10-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 VF_0467 195357b629766ebecddb39af83ff290e 952 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 655 1.1E-218 T 10-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0393 0e8cac9c0fb9312ed53da7eb3ed362e6 323 Gene3D G3DSA:1.20.58.1130 11 209 4.2E-86 T 10-10-2018 VF_0393 0e8cac9c0fb9312ed53da7eb3ed362e6 323 Pfam PF01699 Sodium/calcium exchanger protein 8 146 2.2E-26 T 10-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 VF_0393 0e8cac9c0fb9312ed53da7eb3ed362e6 323 Pfam PF01699 Sodium/calcium exchanger protein 178 317 4.7E-29 T 10-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 VF_0393 0e8cac9c0fb9312ed53da7eb3ed362e6 323 Gene3D G3DSA:1.20.1420.30 38 311 4.2E-86 T 10-10-2018 VF_0393 0e8cac9c0fb9312ed53da7eb3ed362e6 323 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 7 314 5.5E-80 T 10-10-2018 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 VF_A0316 5d0de793236370e7fb828320aee4bc32 292 SUPERFAMILY SSF53613 21 283 1.17E-81 T 10-10-2018 IPR029056 Ribokinase-like VF_A0316 5d0de793236370e7fb828320aee4bc32 292 Pfam PF08543 Phosphomethylpyrimidine kinase 31 279 4.1E-95 T 10-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 VF_A0316 5d0de793236370e7fb828320aee4bc32 292 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 24 281 4.1E-102 T 10-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_A0316 5d0de793236370e7fb828320aee4bc32 292 Gene3D G3DSA:3.40.1190.20 3 291 8.3E-105 T 10-10-2018 IPR029056 Ribokinase-like VF_1912 7e770910b9b229358197f4b5e1a2205b 94 Pfam PF05488 PAAR motif 18 85 1.9E-19 T 10-10-2018 IPR008727 PAAR motif VF_1912 7e770910b9b229358197f4b5e1a2205b 94 Gene3D G3DSA:2.60.200.60 2 94 1.3E-40 T 10-10-2018 VF_A0935 3d00f0243bbdfcb693e5c7d3dd3c2e07 293 Gene3D G3DSA:3.40.190.290 94 265 3.5E-33 T 10-10-2018 VF_A0935 3d00f0243bbdfcb693e5c7d3dd3c2e07 293 SUPERFAMILY SSF53850 95 291 5.07E-20 T 10-10-2018 VF_A0935 3d00f0243bbdfcb693e5c7d3dd3c2e07 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 4.2E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0935 3d00f0243bbdfcb693e5c7d3dd3c2e07 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 4.2E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0935 3d00f0243bbdfcb693e5c7d3dd3c2e07 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 4.2E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0935 3d00f0243bbdfcb693e5c7d3dd3c2e07 293 Pfam PF03466 LysR substrate binding domain 95 288 2.2E-15 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0935 3d00f0243bbdfcb693e5c7d3dd3c2e07 293 SUPERFAMILY SSF46785 4 86 3.65E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0935 3d00f0243bbdfcb693e5c7d3dd3c2e07 293 Gene3D G3DSA:1.10.10.10 1 87 5.0E-22 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0935 3d00f0243bbdfcb693e5c7d3dd3c2e07 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.4E-16 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1928 433dcbce5f05269f0ff36d794e46fa55 346 SUPERFAMILY SSF56042 172 342 3.29E-61 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VF_1928 433dcbce5f05269f0ff36d794e46fa55 346 SUPERFAMILY SSF55326 8 171 1.29E-53 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VF_1928 433dcbce5f05269f0ff36d794e46fa55 346 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 8 334 2.1E-149 T 10-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VF_1928 433dcbce5f05269f0ff36d794e46fa55 346 Gene3D G3DSA:3.90.650.10 172 346 3.4E-71 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VF_1928 433dcbce5f05269f0ff36d794e46fa55 346 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 8 345 47.208 T 10-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VF_1928 433dcbce5f05269f0ff36d794e46fa55 346 Pfam PF00586 AIR synthase related protein, N-terminal domain 64 165 2.4E-15 T 10-10-2018 IPR016188 PurM-like, N-terminal domain VF_1928 433dcbce5f05269f0ff36d794e46fa55 346 Pfam PF02769 AIR synthase related protein, C-terminal domain 178 341 1.4E-38 T 10-10-2018 IPR010918 PurM-like, C-terminal domain VF_1928 433dcbce5f05269f0ff36d794e46fa55 346 Gene3D G3DSA:3.30.1330.10 7 171 6.0E-69 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VF_1864 aaa4fb6cfe5cea44ff2c4d7ad51c6c6d 377 Gene3D G3DSA:1.10.8.410 328 377 3.0E-21 T 10-10-2018 VF_1864 aaa4fb6cfe5cea44ff2c4d7ad51c6c6d 377 Gene3D G3DSA:3.30.70.2120 174 275 4.2E-77 T 10-10-2018 VF_1864 aaa4fb6cfe5cea44ff2c4d7ad51c6c6d 377 Pfam PF07196 Flagellin hook IN motif 195 248 5.6E-8 T 10-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VF_1864 aaa4fb6cfe5cea44ff2c4d7ad51c6c6d 377 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 2.1E-42 T 10-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VF_1864 aaa4fb6cfe5cea44ff2c4d7ad51c6c6d 377 Gene3D G3DSA:1.20.1330.10 44 327 4.2E-77 T 10-10-2018 VF_1864 aaa4fb6cfe5cea44ff2c4d7ad51c6c6d 377 PRINTS PR00207 Flagellin signature 111 134 1.4E-26 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1864 aaa4fb6cfe5cea44ff2c4d7ad51c6c6d 377 PRINTS PR00207 Flagellin signature 37 54 1.4E-26 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1864 aaa4fb6cfe5cea44ff2c4d7ad51c6c6d 377 PRINTS PR00207 Flagellin signature 76 95 1.4E-26 T 10-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VF_1864 aaa4fb6cfe5cea44ff2c4d7ad51c6c6d 377 Pfam PF00700 Bacterial flagellin C-terminal helical region 292 376 1.7E-25 T 10-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VF_1864 aaa4fb6cfe5cea44ff2c4d7ad51c6c6d 377 SUPERFAMILY SSF64518 1 377 4.18E-99 T 10-10-2018 VF_A0646 a45b6f241bec1a96338f284d1f82a91f 152 Gene3D G3DSA:3.40.630.30 1 143 3.4E-26 T 10-10-2018 VF_A0646 a45b6f241bec1a96338f284d1f82a91f 152 Pfam PF13673 Acetyltransferase (GNAT) domain 39 140 7.4E-12 T 10-10-2018 IPR000182 GNAT domain VF_A0646 a45b6f241bec1a96338f284d1f82a91f 152 SUPERFAMILY SSF55729 3 142 6.42E-24 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A0900 90456edd297525e19cf63ba46a7e3e98 431 Gene3D G3DSA:3.20.20.70 28 421 4.3E-112 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A0900 90456edd297525e19cf63ba46a7e3e98 431 Pfam PF04055 Radical SAM superfamily 40 208 1.5E-12 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_A0900 90456edd297525e19cf63ba46a7e3e98 431 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 31 419 9.5E-157 T 10-10-2018 VF_A0900 90456edd297525e19cf63ba46a7e3e98 431 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 313 402 3.3E-17 T 10-10-2018 IPR023885 4Fe4S-binding SPASM domain VF_A0900 90456edd297525e19cf63ba46a7e3e98 431 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 191 316 5.0E-7 T 10-10-2018 VF_A0900 90456edd297525e19cf63ba46a7e3e98 431 Pfam PF13186 Iron-sulfur cluster-binding domain 315 374 6.6E-6 T 10-10-2018 IPR023885 4Fe4S-binding SPASM domain VF_A0900 90456edd297525e19cf63ba46a7e3e98 431 SUPERFAMILY SSF102114 39 383 1.11E-36 T 10-10-2018 VF_0743 25d94aec2a7cd40ae5383c49eb58f86f 225 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 25 210 1.3E-71 T 10-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VF_0743 25d94aec2a7cd40ae5383c49eb58f86f 225 Gene3D G3DSA:3.30.930.10 2 201 5.1E-64 T 10-10-2018 VF_0743 25d94aec2a7cd40ae5383c49eb58f86f 225 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 74 127 1.0E-24 T 10-10-2018 VF_0743 25d94aec2a7cd40ae5383c49eb58f86f 225 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 70 85 - T 10-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 VF_0743 25d94aec2a7cd40ae5383c49eb58f86f 225 SUPERFAMILY SSF55681 4 197 1.91E-68 T 10-10-2018 VF_0743 25d94aec2a7cd40ae5383c49eb58f86f 225 Hamap MF_00013 Octanoyltransferase [lipB]. 4 213 38.239 T 10-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VF_0743 25d94aec2a7cd40ae5383c49eb58f86f 225 PIRSF PIRSF016262 1 214 1.6E-60 T 10-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VF_0743 25d94aec2a7cd40ae5383c49eb58f86f 225 Pfam PF03099 Biotin/lipoate A/B protein ligase family 60 158 2.4E-6 T 10-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 VF_1861 8962877f2ccbe579d9f2ed26253a70fd 139 SUPERFAMILY SSF160214 44 138 4.84E-22 T 10-10-2018 IPR035924 FlaG-like superfamily VF_1861 8962877f2ccbe579d9f2ed26253a70fd 139 Gene3D G3DSA:3.30.160.170 42 135 5.6E-13 T 10-10-2018 IPR035924 FlaG-like superfamily VF_1861 8962877f2ccbe579d9f2ed26253a70fd 139 Pfam PF03646 FlaG protein 51 136 1.1E-20 T 10-10-2018 IPR005186 FlaG protein VF_1993 104a32538294cb799764b3c6045544d2 379 PRINTS PR00625 DnaJ domain signature 7 25 7.2E-32 T 10-10-2018 IPR001623 DnaJ domain VF_1993 104a32538294cb799764b3c6045544d2 379 PRINTS PR00625 DnaJ domain signature 42 62 7.2E-32 T 10-10-2018 IPR001623 DnaJ domain VF_1993 104a32538294cb799764b3c6045544d2 379 PRINTS PR00625 DnaJ domain signature 62 81 7.2E-32 T 10-10-2018 IPR001623 DnaJ domain VF_1993 104a32538294cb799764b3c6045544d2 379 PRINTS PR00625 DnaJ domain signature 25 40 7.2E-32 T 10-10-2018 IPR001623 DnaJ domain VF_1993 104a32538294cb799764b3c6045544d2 379 Gene3D G3DSA:2.10.230.10 147 207 1.7E-37 T 10-10-2018 VF_1993 104a32538294cb799764b3c6045544d2 379 Gene3D G3DSA:2.60.260.20 254 364 7.0E-29 T 10-10-2018 VF_1993 104a32538294cb799764b3c6045544d2 379 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 350 2.7E-139 T 10-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 VF_1993 104a32538294cb799764b3c6045544d2 379 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 373 42.187 T 10-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 VF_1993 104a32538294cb799764b3c6045544d2 379 Pfam PF00684 DnaJ central domain 147 207 4.3E-15 T 10-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 VF_1993 104a32538294cb799764b3c6045544d2 379 SUPERFAMILY SSF46565 1 107 5.1E-35 T 10-10-2018 IPR036869 Chaperone J-domain superfamily VF_1993 104a32538294cb799764b3c6045544d2 379 SUPERFAMILY SSF49493 114 260 9.42E-19 T 10-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 VF_1993 104a32538294cb799764b3c6045544d2 379 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 10-10-2018 IPR018253 DnaJ domain, conserved site VF_1993 104a32538294cb799764b3c6045544d2 379 SUPERFAMILY SSF57938 134 211 1.57E-22 T 10-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily VF_1993 104a32538294cb799764b3c6045544d2 379 Gene3D G3DSA:1.10.287.110 1 116 1.2E-35 T 10-10-2018 IPR036869 Chaperone J-domain superfamily VF_1993 104a32538294cb799764b3c6045544d2 379 SUPERFAMILY SSF49493 259 344 2.22E-21 T 10-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 VF_1993 104a32538294cb799764b3c6045544d2 379 Gene3D G3DSA:2.60.260.20 117 249 1.7E-37 T 10-10-2018 VF_1993 104a32538294cb799764b3c6045544d2 379 Pfam PF00226 DnaJ domain 5 67 9.5E-27 T 10-10-2018 IPR001623 DnaJ domain VF_1993 104a32538294cb799764b3c6045544d2 379 Pfam PF01556 DnaJ C terminal domain 121 333 1.2E-44 T 10-10-2018 IPR002939 Chaperone DnaJ, C-terminal VF_1993 104a32538294cb799764b3c6045544d2 379 SMART SM00271 4 62 2.8E-29 T 10-10-2018 IPR001623 DnaJ domain VF_2328 baf30d406315105add98b410d56c27e0 371 Pfam PF08331 Domain of unknown function (DUF1730) 60 138 9.1E-23 T 10-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 VF_2328 baf30d406315105add98b410d56c27e0 371 SUPERFAMILY SSF54862 167 276 7.95E-19 T 10-10-2018 VF_2328 baf30d406315105add98b410d56c27e0 371 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 191 202 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_2328 baf30d406315105add98b410d56c27e0 371 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 12 346 2.5E-149 T 10-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 VF_2328 baf30d406315105add98b410d56c27e0 371 Pfam PF13484 4Fe-4S double cluster binding domain 190 254 2.9E-21 T 10-10-2018 VF_2328 baf30d406315105add98b410d56c27e0 371 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 5 313 50.868 T 10-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 VF_A0775 486010c38728ae089a3f06b6f15eeea6 390 SUPERFAMILY SSF48452 105 365 4.68E-9 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0775 486010c38728ae089a3f06b6f15eeea6 390 Gene3D G3DSA:1.25.40.10 180 386 2.8E-13 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0775 486010c38728ae089a3f06b6f15eeea6 390 Gene3D G3DSA:1.25.40.10 27 176 7.8E-11 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0775 486010c38728ae089a3f06b6f15eeea6 390 SUPERFAMILY SSF48452 95 229 1.09E-11 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0862 47c13777e920732d53da72ca39f954c0 92 SUPERFAMILY SSF50715 1 92 5.06E-28 T 10-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VF_0862 47c13777e920732d53da72ca39f954c0 92 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 1 92 7.0E-48 T 10-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 VF_0862 47c13777e920732d53da72ca39f954c0 92 Gene3D G3DSA:2.40.240.10 1 92 3.1E-34 T 10-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VF_0862 47c13777e920732d53da72ca39f954c0 92 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 1 92 26.335 T 10-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 VF_0862 47c13777e920732d53da72ca39f954c0 92 Pfam PF01386 Ribosomal L25p family 4 89 1.4E-23 T 10-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 VF_A0542 4d09b577344a5c62177fe5e5501877a8 1354 Pfam PF01751 Toprim domain 1026 1141 2.3E-15 T 10-10-2018 IPR006171 TOPRIM domain VF_A0542 4d09b577344a5c62177fe5e5501877a8 1354 SUPERFAMILY SSF56712 1021 1351 2.75E-30 T 10-10-2018 IPR023405 DNA topoisomerase, type IA, core domain VF_A0542 4d09b577344a5c62177fe5e5501877a8 1354 Gene3D G3DSA:3.40.50.300 786 996 3.1E-23 T 10-10-2018 VF_A0542 4d09b577344a5c62177fe5e5501877a8 1354 Pfam PF13086 AAA domain 678 719 2.4E-6 T 10-10-2018 VF_A0542 4d09b577344a5c62177fe5e5501877a8 1354 Pfam PF13087 AAA domain 776 979 2.6E-16 T 10-10-2018 VF_A0542 4d09b577344a5c62177fe5e5501877a8 1354 SUPERFAMILY SSF52540 309 981 6.42E-29 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0542 4d09b577344a5c62177fe5e5501877a8 1354 Gene3D G3DSA:3.40.50.140 1023 1175 5.2E-23 T 10-10-2018 VF_A0542 4d09b577344a5c62177fe5e5501877a8 1354 SMART SM00493 1024 1140 1.6E-12 T 10-10-2018 IPR006171 TOPRIM domain VF_A0649 5ed596aae37af645cea897ecd7b81769 104 Gene3D G3DSA:3.30.2310.20 1 96 2.4E-18 T 10-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily VF_A0649 5ed596aae37af645cea897ecd7b81769 104 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 4 85 5.8E-8 T 10-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family VF_A0649 5ed596aae37af645cea897ecd7b81769 104 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 91 5.2E-18 T 10-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family VF_1706 88e8380a62c11f1884132c72b2b69fba 87 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 84 19.074 T 10-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 VF_1706 88e8380a62c11f1884132c72b2b69fba 87 Gene3D G3DSA:3.30.1070.10 20 80 3.4E-26 T 10-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 VF_1706 88e8380a62c11f1884132c72b2b69fba 87 Pfam PF03776 Septum formation topological specificity factor MinE 14 82 9.1E-25 T 10-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 VF_1706 88e8380a62c11f1884132c72b2b69fba 87 SUPERFAMILY SSF55229 33 85 1.7E-17 T 10-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 VF_1706 88e8380a62c11f1884132c72b2b69fba 87 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 1.1E-32 T 10-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 VF_A1091 929a0b0c897a5d966b56cba15118edf9 339 Gene3D G3DSA:3.40.50.300 1 237 1.0E-83 T 10-10-2018 VF_A1091 929a0b0c897a5d966b56cba15118edf9 339 SUPERFAMILY SSF52540 4 240 9.58E-89 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A1091 929a0b0c897a5d966b56cba15118edf9 339 SUPERFAMILY SSF50331 250 334 1.25E-6 T 10-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VF_A1091 929a0b0c897a5d966b56cba15118edf9 339 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A1091 929a0b0c897a5d966b56cba15118edf9 339 SMART SM00382 28 211 1.8E-18 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A1091 929a0b0c897a5d966b56cba15118edf9 339 Pfam PF00005 ABC transporter 20 161 3.0E-37 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A1091 929a0b0c897a5d966b56cba15118edf9 339 Pfam PF08402 TOBE domain 257 330 5.1E-5 T 10-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 VF_A0328 ec0f20442b031716568b1d7d0235cd37 222 Pfam PF13488 Glycine zipper 38 86 1.2E-9 T 10-10-2018 IPR039567 Glycine zipper domain VF_A0328 ec0f20442b031716568b1d7d0235cd37 222 PRINTS PR01021 OMPA domain signature 148 163 5.5E-9 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A0328 ec0f20442b031716568b1d7d0235cd37 222 PRINTS PR01021 OMPA domain signature 118 140 5.5E-9 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A0328 ec0f20442b031716568b1d7d0235cd37 222 PRINTS PR01021 OMPA domain signature 163 179 5.5E-9 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A0328 ec0f20442b031716568b1d7d0235cd37 222 SUPERFAMILY SSF103088 107 221 9.94E-36 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A0328 ec0f20442b031716568b1d7d0235cd37 222 Pfam PF00691 OmpA family 118 212 4.6E-22 T 10-10-2018 IPR006665 OmpA-like domain VF_A0328 ec0f20442b031716568b1d7d0235cd37 222 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 201 221 6.8E-8 T 10-10-2018 VF_A0328 ec0f20442b031716568b1d7d0235cd37 222 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 181 200 6.8E-8 T 10-10-2018 VF_A0328 ec0f20442b031716568b1d7d0235cd37 222 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 163 180 6.8E-8 T 10-10-2018 VF_A0328 ec0f20442b031716568b1d7d0235cd37 222 Gene3D G3DSA:3.30.1330.60 80 222 2.4E-44 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_1715 8e1859581ff21aae47b0bb3e402c0f5e 265 Pfam PF00561 alpha/beta hydrolase fold 18 126 3.1E-21 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_1715 8e1859581ff21aae47b0bb3e402c0f5e 265 Gene3D G3DSA:3.40.50.1820 6 264 7.8E-45 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_1715 8e1859581ff21aae47b0bb3e402c0f5e 265 SUPERFAMILY SSF53474 10 262 1.27E-45 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_1715 8e1859581ff21aae47b0bb3e402c0f5e 265 PRINTS PR00412 Epoxide hydrolase signature 239 261 4.6E-5 T 10-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VF_1715 8e1859581ff21aae47b0bb3e402c0f5e 265 PRINTS PR00412 Epoxide hydrolase signature 24 42 4.6E-5 T 10-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VF_1715 8e1859581ff21aae47b0bb3e402c0f5e 265 PRINTS PR00412 Epoxide hydrolase signature 207 223 4.6E-5 T 10-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VF_0082 679b494fca79a4e33ba87bfc9230aa94 259 Gene3D G3DSA:3.40.50.150 57 259 1.5E-74 T 10-10-2018 VF_0082 679b494fca79a4e33ba87bfc9230aa94 259 Pfam PF04445 Putative SAM-dependent methyltransferase 19 254 5.3E-107 T 10-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 VF_0082 679b494fca79a4e33ba87bfc9230aa94 259 Gene3D G3DSA:3.40.1630.10 1 56 2.6E-23 T 10-10-2018 VF_0082 679b494fca79a4e33ba87bfc9230aa94 259 SUPERFAMILY SSF53335 5 254 5.21E-74 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_0082 679b494fca79a4e33ba87bfc9230aa94 259 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 3 256 39.348 T 10-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 VF_0685 856bd6d2a672f7e8974a3e7c3c8eac35 225 Gene3D G3DSA:1.10.3720.10 11 225 7.0E-51 T 10-10-2018 IPR035906 MetI-like superfamily VF_0685 856bd6d2a672f7e8974a3e7c3c8eac35 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 223 6.3E-23 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_0685 856bd6d2a672f7e8974a3e7c3c8eac35 225 SUPERFAMILY SSF161098 15 210 3.14E-46 T 10-10-2018 IPR035906 MetI-like superfamily VF_1495 0827e648cb951f2a71266f6c19f297cc 560 Pfam PF03961 Flagellar Assembly Protein A 82 545 3.5E-132 T 10-10-2018 IPR005646 Flagellar assembly protein A VF_A0969 0f4e0ac35f96af9dadd924b5fe8ba46d 448 Gene3D G3DSA:2.30.40.10 8 445 1.1E-149 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_A0969 0f4e0ac35f96af9dadd924b5fe8ba46d 448 Gene3D G3DSA:3.20.20.140 72 392 1.1E-149 T 10-10-2018 VF_A0969 0f4e0ac35f96af9dadd924b5fe8ba46d 448 SUPERFAMILY SSF51556 71 390 6.49E-81 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_A0969 0f4e0ac35f96af9dadd924b5fe8ba46d 448 SUPERFAMILY SSF51338 363 448 1.9E-10 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_A0969 0f4e0ac35f96af9dadd924b5fe8ba46d 448 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 21 444 3.3E-117 T 10-10-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 VF_A0969 0f4e0ac35f96af9dadd924b5fe8ba46d 448 Pfam PF01979 Amidohydrolase family 68 447 1.4E-53 T 10-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VF_1530 cfd01e4156cbd6ad1c1ba23c8fd11ee7 231 Gene3D G3DSA:3.40.1410.10 66 216 1.7E-16 T 10-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VF_1530 cfd01e4156cbd6ad1c1ba23c8fd11ee7 231 SMART SM00866 86 224 5.2E-9 T 10-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 VF_1530 cfd01e4156cbd6ad1c1ba23c8fd11ee7 231 SUPERFAMILY SSF46785 3 75 3.54E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1530 cfd01e4156cbd6ad1c1ba23c8fd11ee7 231 SUPERFAMILY SSF64288 53 227 4.4E-21 T 10-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VF_1530 cfd01e4156cbd6ad1c1ba23c8fd11ee7 231 Pfam PF07702 UTRA domain 87 222 1.6E-13 T 10-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 VF_1530 cfd01e4156cbd6ad1c1ba23c8fd11ee7 231 SMART SM00345 6 65 8.4E-14 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_1530 cfd01e4156cbd6ad1c1ba23c8fd11ee7 231 Gene3D G3DSA:1.10.10.10 2 65 1.0E-18 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1530 cfd01e4156cbd6ad1c1ba23c8fd11ee7 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 65 3.0E-17 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_1530 cfd01e4156cbd6ad1c1ba23c8fd11ee7 231 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 25 39 1.9E-7 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_1530 cfd01e4156cbd6ad1c1ba23c8fd11ee7 231 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 55 1.9E-7 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_0134 8af25f0db603791d8fa16c39583f7a75 261 Gene3D G3DSA:3.90.550.10 1 229 3.7E-22 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0134 8af25f0db603791d8fa16c39583f7a75 261 Pfam PF00535 Glycosyl transferase family 2 11 151 1.1E-16 T 10-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VF_0134 8af25f0db603791d8fa16c39583f7a75 261 SUPERFAMILY SSF53448 3 183 4.45E-26 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0145 939cbb6e0259fd875ffa94be007ce5c3 352 SUPERFAMILY SSF54631 8 56 3.32E-7 T 10-10-2018 VF_0145 939cbb6e0259fd875ffa94be007ce5c3 352 SUPERFAMILY SSF53448 48 346 3.05E-71 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0145 939cbb6e0259fd875ffa94be007ce5c3 352 Pfam PF00571 CBS domain 65 114 6.9E-4 T 10-10-2018 IPR000644 CBS domain VF_0145 939cbb6e0259fd875ffa94be007ce5c3 352 Pfam PF00571 CBS domain 9 54 3.8E-7 T 10-10-2018 IPR000644 CBS domain VF_0145 939cbb6e0259fd875ffa94be007ce5c3 352 Pfam PF00483 Nucleotidyl transferase 124 346 3.9E-38 T 10-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VF_0145 939cbb6e0259fd875ffa94be007ce5c3 352 Gene3D G3DSA:3.90.550.10 121 348 4.9E-62 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0145 939cbb6e0259fd875ffa94be007ce5c3 352 Gene3D G3DSA:3.10.580.10 1 114 9.6E-24 T 10-10-2018 VF_2051 f8a501930c33b49443f1d5e0fda96ded 311 Gene3D G3DSA:3.40.190.10 92 280 1.9E-11 T 10-10-2018 VF_2051 f8a501930c33b49443f1d5e0fda96ded 311 Gene3D G3DSA:1.10.10.10 2 91 9.3E-22 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2051 f8a501930c33b49443f1d5e0fda96ded 311 SUPERFAMILY SSF46785 3 81 7.18E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_2051 f8a501930c33b49443f1d5e0fda96ded 311 Gene3D G3DSA:3.40.190.10 166 273 1.9E-11 T 10-10-2018 VF_2051 f8a501930c33b49443f1d5e0fda96ded 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 2.8E-16 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2051 f8a501930c33b49443f1d5e0fda96ded 311 Pfam PF03466 LysR substrate binding domain 89 299 3.2E-11 T 10-10-2018 IPR005119 LysR, substrate-binding VF_2051 f8a501930c33b49443f1d5e0fda96ded 311 SUPERFAMILY SSF53850 88 300 2.17E-19 T 10-10-2018 VF_2051 f8a501930c33b49443f1d5e0fda96ded 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 17 28 1.5E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2051 f8a501930c33b49443f1d5e0fda96ded 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 38 1.5E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2051 f8a501930c33b49443f1d5e0fda96ded 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 1.5E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1430 4de8043a8a7cc270764ddfe030a9a544 523 Gene3D G3DSA:3.40.720.10 24 428 6.8E-99 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VF_1430 4de8043a8a7cc270764ddfe030a9a544 523 Pfam PF00884 Sulfatase 27 353 1.9E-67 T 10-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VF_1430 4de8043a8a7cc270764ddfe030a9a544 523 SUPERFAMILY SSF53649 24 477 1.89E-121 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_A0560 d54e6d6bf299a13a4726471ee3c0d414 481 SUPERFAMILY SSF47384 271 339 2.94E-6 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_A0560 d54e6d6bf299a13a4726471ee3c0d414 481 SMART SM00388 274 341 0.0022 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0560 d54e6d6bf299a13a4726471ee3c0d414 481 Pfam PF11884 Domain of unknown function (DUF3404) 15 273 1.4E-98 T 10-10-2018 IPR021821 Protein of unknown function DUF3404 VF_A0560 d54e6d6bf299a13a4726471ee3c0d414 481 Gene3D G3DSA:1.10.287.130 281 338 3.6E-16 T 10-10-2018 VF_A0560 d54e6d6bf299a13a4726471ee3c0d414 481 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 384 474 1.3E-9 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0560 d54e6d6bf299a13a4726471ee3c0d414 481 Gene3D G3DSA:3.30.565.10 339 473 3.6E-16 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0560 d54e6d6bf299a13a4726471ee3c0d414 481 SMART SM00387 378 476 8.2E-12 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0560 d54e6d6bf299a13a4726471ee3c0d414 481 SUPERFAMILY SSF55874 351 476 4.58E-17 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2534 85736e9100336734c9aaf8e2f45b83d7 87 SUPERFAMILY SSF160272 1 86 6.02E-26 T 10-10-2018 IPR036692 Shew3726-like superfamily VF_2534 85736e9100336734c9aaf8e2f45b83d7 87 Gene3D G3DSA:3.30.160.140 1 87 6.1E-31 T 10-10-2018 IPR036692 Shew3726-like superfamily VF_2534 85736e9100336734c9aaf8e2f45b83d7 87 Pfam PF07369 Protein of unknown function (DUF1488) 5 85 1.3E-20 T 10-10-2018 IPR009962 Protein of unknown function DUF1488 VF_0005 852b5dced61e83e6bc31867af0a2bb91 44 Pfam PF00468 Ribosomal protein L34 1 43 1.4E-24 T 10-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0005 852b5dced61e83e6bc31867af0a2bb91 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.225 T 10-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0005 852b5dced61e83e6bc31867af0a2bb91 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 10-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0005 852b5dced61e83e6bc31867af0a2bb91 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 43 3.5E-26 T 10-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0005 852b5dced61e83e6bc31867af0a2bb91 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 40 2.0E-15 T 10-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1703 22ae1c4e48d7edb754b68a60030cd45e 86 Gene3D G3DSA:3.10.510.20 1 73 4.8E-29 T 10-10-2018 IPR038068 YcgL-like superfamily VF_1703 22ae1c4e48d7edb754b68a60030cd45e 86 Pfam PF05166 YcgL domain 3 74 5.8E-31 T 10-10-2018 IPR027354 YcgL domain VF_1703 22ae1c4e48d7edb754b68a60030cd45e 86 Hamap MF_01866 Protein YcgL [ycgL]. 1 86 26.251 T 10-10-2018 IPR027354 YcgL domain VF_1703 22ae1c4e48d7edb754b68a60030cd45e 86 SUPERFAMILY SSF160191 1 85 3.27E-35 T 10-10-2018 IPR038068 YcgL-like superfamily VF_1703 22ae1c4e48d7edb754b68a60030cd45e 86 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 69 2.0E-34 T 10-10-2018 IPR027354 YcgL domain VF_A0266 f451eba1bf5757fbbf816fd9cc3ff626 221 SMART SM00862 146 220 5.7E-13 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0266 f451eba1bf5757fbbf816fd9cc3ff626 221 Gene3D G3DSA:3.40.50.2300 1 125 6.5E-35 T 10-10-2018 VF_A0266 f451eba1bf5757fbbf816fd9cc3ff626 221 Gene3D G3DSA:1.10.10.10 126 221 9.6E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0266 f451eba1bf5757fbbf816fd9cc3ff626 221 SMART SM00448 1 113 1.1E-40 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0266 f451eba1bf5757fbbf816fd9cc3ff626 221 Pfam PF00072 Response regulator receiver domain 3 112 2.8E-28 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0266 f451eba1bf5757fbbf816fd9cc3ff626 221 SUPERFAMILY SSF52172 1 174 6.69E-38 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0266 f451eba1bf5757fbbf816fd9cc3ff626 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 220 9.4E-16 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_1618 db31c530d282d21c5141c1b8de861b76 546 Gene3D G3DSA:1.10.287.950 215 546 1.7E-74 T 10-10-2018 VF_1618 db31c530d282d21c5141c1b8de861b76 546 SMART SM00304 215 269 4.5E-15 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_1618 db31c530d282d21c5141c1b8de861b76 546 SMART SM00283 284 545 4.0E-71 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1618 db31c530d282d21c5141c1b8de861b76 546 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 354 511 1.9E-41 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1618 db31c530d282d21c5141c1b8de861b76 546 SUPERFAMILY SSF58104 237 546 1.31E-74 T 10-10-2018 VF_1618 db31c530d282d21c5141c1b8de861b76 546 Pfam PF00672 HAMP domain 216 265 2.0E-12 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_1748 0f362f862e955fe091eb24f6b0fa3790 994 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 424 3.9E-172 T 10-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 VF_1748 0f362f862e955fe091eb24f6b0fa3790 994 Hamap MF_00970 Ribonuclease E [rne]. 1 981 38.77 T 10-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 VF_1748 0f362f862e955fe091eb24f6b0fa3790 994 Pfam PF00575 S1 RNA binding domain 37 118 3.4E-15 T 10-10-2018 IPR003029 S1 domain GO:0003676 VF_1748 0f362f862e955fe091eb24f6b0fa3790 994 SUPERFAMILY SSF50249 40 124 9.03E-21 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1748 0f362f862e955fe091eb24f6b0fa3790 994 Gene3D G3DSA:3.40.1260.20 400 508 4.2E-39 T 10-10-2018 VF_1748 0f362f862e955fe091eb24f6b0fa3790 994 Pfam PF10150 Ribonuclease E/G family 121 390 1.6E-95 T 10-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 VF_1748 0f362f862e955fe091eb24f6b0fa3790 994 Gene3D G3DSA:2.40.50.140 32 125 5.1E-33 T 10-10-2018 VF_1748 0f362f862e955fe091eb24f6b0fa3790 994 SMART SM00316 37 119 1.7E-12 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_A0923 ccddb0c216c7640bff0bce70a4940a29 479 Gene3D G3DSA:3.40.309.10 258 314 1.9E-13 T 10-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VF_A0923 ccddb0c216c7640bff0bce70a4940a29 479 PIRSF PIRSF009414 1 479 6.1E-233 T 10-10-2018 IPR008670 Long-chain-fatty-acyl-CoA reductase, LuxC GO:0003995|GO:0008218|GO:0055114 KEGG: 00073+1.2.1.50|MetaCyc: PWY-7723 VF_A0923 ccddb0c216c7640bff0bce70a4940a29 479 Gene3D G3DSA:3.40.605.10 134 257 1.9E-13 T 10-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VF_A0923 ccddb0c216c7640bff0bce70a4940a29 479 Pfam PF05893 Acyl-CoA reductase (LuxC) 53 444 3.2E-113 T 10-10-2018 IPR008670 Long-chain-fatty-acyl-CoA reductase, LuxC GO:0003995|GO:0008218|GO:0055114 KEGG: 00073+1.2.1.50|MetaCyc: PWY-7723 VF_A0923 ccddb0c216c7640bff0bce70a4940a29 479 SUPERFAMILY SSF53720 56 432 3.14E-26 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VF_0593 c7ee8b896572df551afd9ce640403b53 359 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 353 86.341 T 10-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 VF_0593 c7ee8b896572df551afd9ce640403b53 359 Pfam PF01728 FtsJ-like methyltransferase 184 263 3.0E-5 T 10-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 VF_0593 c7ee8b896572df551afd9ce640403b53 359 Gene3D G3DSA:3.30.70.2810 1 75 8.9E-31 T 10-10-2018 VF_0593 c7ee8b896572df551afd9ce640403b53 359 Gene3D G3DSA:3.30.2300.20 76 173 4.4E-38 T 10-10-2018 VF_0593 c7ee8b896572df551afd9ce640403b53 359 PIRSF PIRSF028774 1 358 5.3E-187 T 10-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 VF_0593 c7ee8b896572df551afd9ce640403b53 359 Gene3D G3DSA:3.40.50.150 174 354 3.4E-53 T 10-10-2018 VF_0593 c7ee8b896572df551afd9ce640403b53 359 SUPERFAMILY SSF53335 182 300 7.14E-12 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_0399 9f36fda5eba1b580a35d6be8d7243a89 106 Gene3D G3DSA:3.30.750.24 8 102 6.2E-13 T 10-10-2018 IPR036513 STAS domain superfamily VF_0399 9f36fda5eba1b580a35d6be8d7243a89 106 Pfam PF13466 STAS domain 15 92 3.3E-17 T 10-10-2018 IPR002645 STAS domain VF_0399 9f36fda5eba1b580a35d6be8d7243a89 106 SUPERFAMILY SSF52091 12 97 3.73E-17 T 10-10-2018 IPR036513 STAS domain superfamily VF_A0905 8b10a9556077c5ed4c337c04acd01064 413 Pfam PF13584 Oxygen tolerance 53 301 5.1E-20 T 10-10-2018 IPR025738 Aerotolerance-related protein BatD VF_A1086 220d2ba5de696fe719ba7f20e7a98e20 296 Gene3D G3DSA:3.40.190.10 95 287 3.2E-17 T 10-10-2018 VF_A1086 220d2ba5de696fe719ba7f20e7a98e20 296 Gene3D G3DSA:3.40.190.10 160 265 3.2E-17 T 10-10-2018 VF_A1086 220d2ba5de696fe719ba7f20e7a98e20 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 6.9E-17 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1086 220d2ba5de696fe719ba7f20e7a98e20 296 SUPERFAMILY SSF53850 89 293 2.9E-30 T 10-10-2018 VF_A1086 220d2ba5de696fe719ba7f20e7a98e20 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.0E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1086 220d2ba5de696fe719ba7f20e7a98e20 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.0E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1086 220d2ba5de696fe719ba7f20e7a98e20 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.0E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1086 220d2ba5de696fe719ba7f20e7a98e20 296 Pfam PF03466 LysR substrate binding domain 89 293 2.5E-28 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A1086 220d2ba5de696fe719ba7f20e7a98e20 296 SUPERFAMILY SSF46785 6 82 3.92E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A1086 220d2ba5de696fe719ba7f20e7a98e20 296 Gene3D G3DSA:1.10.10.10 5 70 1.1E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1003 9dd09cab5091073ec5c77058b0a6f712 166 Pfam PF03830 PTS system sorbose subfamily IIB component 6 154 5.9E-47 T 10-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 VF_A1003 9dd09cab5091073ec5c77058b0a6f712 166 Gene3D G3DSA:3.40.35.10 1 165 6.2E-48 T 10-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 VF_A1003 9dd09cab5091073ec5c77058b0a6f712 166 SUPERFAMILY SSF52728 5 162 2.09E-46 T 10-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 VF_A1003 9dd09cab5091073ec5c77058b0a6f712 166 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 5 153 2.4E-51 T 10-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 VF_2299 92412cedf2016235229d7726e126a2f6 299 Gene3D G3DSA:3.40.190.10 91 281 5.0E-69 T 10-10-2018 VF_2299 92412cedf2016235229d7726e126a2f6 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.6E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2299 92412cedf2016235229d7726e126a2f6 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.6E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2299 92412cedf2016235229d7726e126a2f6 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.6E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2299 92412cedf2016235229d7726e126a2f6 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.4E-19 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_2299 92412cedf2016235229d7726e126a2f6 299 Pfam PF03466 LysR substrate binding domain 88 290 2.9E-47 T 10-10-2018 IPR005119 LysR, substrate-binding VF_2299 92412cedf2016235229d7726e126a2f6 299 SUPERFAMILY SSF53850 88 296 3.4E-42 T 10-10-2018 VF_2299 92412cedf2016235229d7726e126a2f6 299 Gene3D G3DSA:3.40.190.10 164 267 5.0E-69 T 10-10-2018 VF_2299 92412cedf2016235229d7726e126a2f6 299 Gene3D G3DSA:1.10.10.10 1 85 8.6E-28 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2299 92412cedf2016235229d7726e126a2f6 299 SUPERFAMILY SSF46785 1 86 1.4E-21 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1003 d0611a95a4103b17835fea37b4af1b68 491 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 17 489 1.6E-218 T 10-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath VF_1003 d0611a95a4103b17835fea37b4af1b68 491 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 65 489 1.3E-185 T 10-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath VF_0934 6dd1444f6f7adcd7cb4b67753d4a13e2 194 Pfam PF04060 Putative Fe-S cluster 44 75 1.0E-13 T 10-10-2018 IPR007202 4Fe-4S domain GO:0051536 VF_0934 6dd1444f6f7adcd7cb4b67753d4a13e2 194 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 144 155 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_0934 6dd1444f6f7adcd7cb4b67753d4a13e2 194 SUPERFAMILY SSF54862 37 173 3.91E-31 T 10-10-2018 VF_0934 6dd1444f6f7adcd7cb4b67753d4a13e2 194 PIRSF PIRSF005784 3 188 8.8E-86 T 10-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 VF_0934 6dd1444f6f7adcd7cb4b67753d4a13e2 194 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 4 166 26.008 T 10-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 VF_0934 6dd1444f6f7adcd7cb4b67753d4a13e2 194 Gene3D G3DSA:1.10.15.40 38 81 2.3E-7 T 10-10-2018 VF_0934 6dd1444f6f7adcd7cb4b67753d4a13e2 194 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 1 186 1.2E-86 T 10-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 VF_0934 6dd1444f6f7adcd7cb4b67753d4a13e2 194 Gene3D G3DSA:3.30.70.20 82 180 2.0E-21 T 10-10-2018 VF_0934 6dd1444f6f7adcd7cb4b67753d4a13e2 194 Pfam PF14697 4Fe-4S dicluster domain 107 161 1.0E-17 T 10-10-2018 VF_A0240 70629ebc4c11406c5f49ff27f847d723 373 Pfam PF00486 Transcriptional regulatory protein, C terminal 25 97 6.6E-14 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0240 70629ebc4c11406c5f49ff27f847d723 373 SMART SM00862 24 98 3.8E-9 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0240 70629ebc4c11406c5f49ff27f847d723 373 SUPERFAMILY SSF46894 9 97 4.25E-15 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_A0240 70629ebc4c11406c5f49ff27f847d723 373 Gene3D G3DSA:1.10.10.10 1 108 9.0E-18 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1402 7a4921555f08ab58b5b6527687302c46 273 SUPERFAMILY SSF53850 33 260 1.43E-32 T 10-10-2018 VF_1402 7a4921555f08ab58b5b6527687302c46 273 Gene3D G3DSA:3.40.190.10 109 221 7.4E-99 T 10-10-2018 VF_1402 7a4921555f08ab58b5b6527687302c46 273 Gene3D G3DSA:3.40.190.10 34 258 7.4E-99 T 10-10-2018 VF_1402 7a4921555f08ab58b5b6527687302c46 273 Pfam PF12849 PBP superfamily domain 33 252 1.5E-28 T 10-10-2018 IPR024370 PBP domain VF_0235 409ad37df1f7a4b35a658144e3655517 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 10-10-2018 IPR019926 Ribosomal protein L3, conserved site VF_0235 409ad37df1f7a4b35a658144e3655517 209 Pfam PF00297 Ribosomal protein L3 83 182 3.5E-16 T 10-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0235 409ad37df1f7a4b35a658144e3655517 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 204 7.4E-95 T 10-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0235 409ad37df1f7a4b35a658144e3655517 209 Gene3D G3DSA:2.40.30.10 130 209 7.0E-20 T 10-10-2018 VF_0235 409ad37df1f7a4b35a658144e3655517 209 Gene3D G3DSA:2.40.50.620 32 96 4.5E-16 T 10-10-2018 VF_0235 409ad37df1f7a4b35a658144e3655517 209 SUPERFAMILY SSF50447 1 208 3.8E-84 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VF_0235 409ad37df1f7a4b35a658144e3655517 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 207 41.386 T 10-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1663 60dd3252845fa3054b611618e2766072 297 SMART SM00978 166 297 2.5E-37 T 10-10-2018 IPR007379 Tim44-like domain VF_1663 60dd3252845fa3054b611618e2766072 297 Gene3D G3DSA:3.10.450.240 173 296 2.5E-6 T 10-10-2018 VF_1663 60dd3252845fa3054b611618e2766072 297 SUPERFAMILY SSF54427 175 296 8.76E-16 T 10-10-2018 IPR032710 NTF2-like domain superfamily VF_1663 60dd3252845fa3054b611618e2766072 297 Pfam PF04280 Tim44-like domain 175 297 2.5E-13 T 10-10-2018 IPR007379 Tim44-like domain VF_2200 0376ad7b318001b64acf566882236f6c 487 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 25 473 1.6E-185 T 10-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_2200 0376ad7b318001b64acf566882236f6c 487 Pfam PF01225 Mur ligase family, catalytic domain 25 122 5.0E-30 T 10-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 VF_2200 0376ad7b318001b64acf566882236f6c 487 Gene3D G3DSA:3.40.1190.10 111 323 1.8E-83 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VF_2200 0376ad7b318001b64acf566882236f6c 487 Pfam PF02875 Mur ligase family, glutamate ligase domain 329 417 1.9E-20 T 10-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VF_2200 0376ad7b318001b64acf566882236f6c 487 SUPERFAMILY SSF51984 25 109 9.55E-28 T 10-10-2018 VF_2200 0376ad7b318001b64acf566882236f6c 487 Gene3D G3DSA:3.90.190.20 324 485 3.1E-50 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VF_2200 0376ad7b318001b64acf566882236f6c 487 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 22 479 43.322 T 10-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_2200 0376ad7b318001b64acf566882236f6c 487 SUPERFAMILY SSF53244 326 473 1.83E-47 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VF_2200 0376ad7b318001b64acf566882236f6c 487 Gene3D G3DSA:3.40.50.720 24 110 1.6E-32 T 10-10-2018 VF_2200 0376ad7b318001b64acf566882236f6c 487 Pfam PF08245 Mur ligase middle domain 127 307 2.4E-26 T 10-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VF_2200 0376ad7b318001b64acf566882236f6c 487 SUPERFAMILY SSF53623 108 325 1.16E-74 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VF_2561 1ff18be92236db748e926d572f00df9b 69 PIRSF PIRSF002599 1 69 3.0E-25 T 10-10-2018 IPR012156 Cold shock, CspA GO:0003676 VF_2561 1ff18be92236db748e926d572f00df9b 69 SUPERFAMILY SSF50249 4 68 1.37E-25 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_2561 1ff18be92236db748e926d572f00df9b 69 PRINTS PR00050 Cold shock protein signature 6 21 9.2E-17 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_2561 1ff18be92236db748e926d572f00df9b 69 PRINTS PR00050 Cold shock protein signature 42 60 9.2E-17 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_2561 1ff18be92236db748e926d572f00df9b 69 PRINTS PR00050 Cold shock protein signature 27 36 9.2E-17 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_2561 1ff18be92236db748e926d572f00df9b 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 5.6E-31 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_2561 1ff18be92236db748e926d572f00df9b 69 SMART SM00357 5 69 1.2E-30 T 10-10-2018 IPR011129 Cold shock domain GO:0003676 VF_2561 1ff18be92236db748e926d572f00df9b 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 10-10-2018 IPR019844 Cold-shock conserved site VF_2561 1ff18be92236db748e926d572f00df9b 69 Gene3D G3DSA:2.40.50.140 1 67 4.2E-30 T 10-10-2018 VF_1455 f57f7ab1e23968f7c109c43288f809b8 561 Pfam PF00924 Mechanosensitive ion channel 329 521 4.5E-55 T 10-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VF_1455 f57f7ab1e23968f7c109c43288f809b8 561 Gene3D G3DSA:3.30.70.100 433 525 2.7E-27 T 10-10-2018 VF_1455 f57f7ab1e23968f7c109c43288f809b8 561 SUPERFAMILY SSF50182 366 432 1.14E-17 T 10-10-2018 IPR010920 LSM domain superfamily VF_1455 f57f7ab1e23968f7c109c43288f809b8 561 SUPERFAMILY SSF82861 279 365 1.31E-13 T 10-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 VF_1455 f57f7ab1e23968f7c109c43288f809b8 561 Gene3D G3DSA:2.30.30.60 382 430 2.3E-17 T 10-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VF_1455 f57f7ab1e23968f7c109c43288f809b8 561 SUPERFAMILY SSF82689 435 531 4.45E-32 T 10-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 VF_A0124 1db4bda2b83d25e5d4085bdcb0f5c903 494 Gene3D G3DSA:1.20.1250.20 3 481 6.3E-107 T 10-10-2018 VF_A0124 1db4bda2b83d25e5d4085bdcb0f5c903 494 SUPERFAMILY SSF103473 4 201 1.44E-21 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0124 1db4bda2b83d25e5d4085bdcb0f5c903 494 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 147 159 - T 10-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 VF_A0124 1db4bda2b83d25e5d4085bdcb0f5c903 494 SUPERFAMILY SSF103473 216 485 1.96E-11 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0124 1db4bda2b83d25e5d4085bdcb0f5c903 494 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 67 91 - T 10-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 VF_A0124 1db4bda2b83d25e5d4085bdcb0f5c903 494 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 6 480 1.9E-137 T 10-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 VF_A0124 1db4bda2b83d25e5d4085bdcb0f5c903 494 Pfam PF00854 POT family 79 440 1.6E-77 T 10-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 VF_A0530 15f78e540cbbf854a59393a331dee409 244 Pfam PF01048 Phosphorylase superfamily 17 200 3.2E-32 T 10-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VF_A0530 15f78e540cbbf854a59393a331dee409 244 SUPERFAMILY SSF53167 4 221 5.11E-67 T 10-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VF_A0530 15f78e540cbbf854a59393a331dee409 244 Gene3D G3DSA:3.40.50.1580 1 244 1.5E-76 T 10-10-2018 VF_2538 e5cf97fd2e21dfcf27dd8c07a686e160 370 Gene3D G3DSA:3.40.50.20 1 96 3.8E-18 T 10-10-2018 VF_2538 e5cf97fd2e21dfcf27dd8c07a686e160 370 Pfam PF02222 ATP-grasp domain 101 274 1.2E-51 T 10-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type VF_2538 e5cf97fd2e21dfcf27dd8c07a686e160 370 SUPERFAMILY SSF52440 2 88 5.18E-16 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VF_2538 e5cf97fd2e21dfcf27dd8c07a686e160 370 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 3 351 2.4E-105 T 10-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 VF_2538 e5cf97fd2e21dfcf27dd8c07a686e160 370 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 2 347 35.507 T 10-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 VF_2538 e5cf97fd2e21dfcf27dd8c07a686e160 370 SUPERFAMILY SSF56059 92 293 3.71E-55 T 10-10-2018 VF_2538 e5cf97fd2e21dfcf27dd8c07a686e160 370 Gene3D G3DSA:3.30.470.20 178 370 4.3E-68 T 10-10-2018 VF_2538 e5cf97fd2e21dfcf27dd8c07a686e160 370 SUPERFAMILY SSF51246 299 366 8.63E-20 T 10-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 VF_2538 e5cf97fd2e21dfcf27dd8c07a686e160 370 Gene3D G3DSA:3.30.1490.20 97 177 3.8E-19 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VF_1542 2d531a96a0bf206cb77099e91eb3479f 158 Gene3D G3DSA:3.40.630.30 1 136 1.5E-34 T 10-10-2018 VF_1542 2d531a96a0bf206cb77099e91eb3479f 158 SUPERFAMILY SSF55729 3 145 7.86E-24 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_1542 2d531a96a0bf206cb77099e91eb3479f 158 Pfam PF00583 Acetyltransferase (GNAT) family 32 144 3.5E-16 T 10-10-2018 IPR000182 GNAT domain VF_1590 a03918f4845911fae31469bd8bc4c731 758 Gene3D G3DSA:3.20.70.20 1 758 0.0 T 10-10-2018 VF_1590 a03918f4845911fae31469bd8bc4c731 758 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 8 758 0.0 T 10-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 VF_1590 a03918f4845911fae31469bd8bc4c731 758 Pfam PF01228 Glycine radical 628 739 2.7E-43 T 10-10-2018 IPR001150 Glycine radical domain GO:0003824 VF_1590 a03918f4845911fae31469bd8bc4c731 758 SUPERFAMILY SSF51998 4 757 7.78E-289 T 10-10-2018 VF_1590 a03918f4845911fae31469bd8bc4c731 758 Pfam PF02901 Pyruvate formate lyase-like 21 612 8.8E-202 T 10-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 VF_1590 a03918f4845911fae31469bd8bc4c731 758 ProSitePatterns PS00850 Glycine radical domain signature. 728 736 - T 10-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site VF_1590 a03918f4845911fae31469bd8bc4c731 758 PIRSF PIRSF000379 5 758 0.0 T 10-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 VF_A1001 3c1a77b9dd4a2eed3dabc5f9098b97cc 305 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 45 305 1.4E-80 T 10-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 VF_0385 2de548c3870e0956390786db5a07980b 147 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 10-10-2018 IPR002178 PTS EIIA type-2 domain VF_0385 2de548c3870e0956390786db5a07980b 147 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 2 146 1.2E-49 T 10-10-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 VF_0385 2de548c3870e0956390786db5a07980b 147 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 9 146 9.4E-38 T 10-10-2018 IPR002178 PTS EIIA type-2 domain VF_0385 2de548c3870e0956390786db5a07980b 147 Gene3D G3DSA:3.40.930.10 1 147 1.1E-53 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_0385 2de548c3870e0956390786db5a07980b 147 SUPERFAMILY SSF55804 1 146 1.7E-39 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0223 2bf3a7a5f6eaeb266e29e50a8e463919 428 Gene3D G3DSA:3.30.450.380 1 166 1.1E-37 T 10-10-2018 VF_A0223 2bf3a7a5f6eaeb266e29e50a8e463919 428 SMART SM00382 195 349 0.0016 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0223 2bf3a7a5f6eaeb266e29e50a8e463919 428 Gene3D G3DSA:3.40.50.300 168 416 8.5E-72 T 10-10-2018 VF_A0223 2bf3a7a5f6eaeb266e29e50a8e463919 428 SUPERFAMILY SSF52540 58 354 8.99E-60 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0223 2bf3a7a5f6eaeb266e29e50a8e463919 428 Pfam PF00437 Type II/IV secretion system protein 71 347 2.0E-80 T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_A0580 f8cb7a273550bfbcd271e6cdafb0ec65 108 PIRSF PIRSF029091 1 108 7.6E-59 T 10-10-2018 IPR010008 Vibrio phage CTX, RstB VF_A0580 f8cb7a273550bfbcd271e6cdafb0ec65 108 Pfam PF07459 CTX phage RstB protein 2 107 1.2E-27 T 10-10-2018 IPR010008 Vibrio phage CTX, RstB VF_0302 fff2df3caeb49401231cb7c929698195 360 SUPERFAMILY SSF51419 11 237 1.57E-67 T 10-10-2018 IPR029066 PLP-binding barrel VF_0302 fff2df3caeb49401231cb7c929698195 360 SUPERFAMILY SSF50621 230 359 5.58E-46 T 10-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VF_0302 fff2df3caeb49401231cb7c929698195 360 Hamap MF_01201 Alanine racemase. 4 360 35.27 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0302 fff2df3caeb49401231cb7c929698195 360 Gene3D G3DSA:3.20.20.10 13 220 6.8E-130 T 10-10-2018 IPR029066 PLP-binding barrel VF_0302 fff2df3caeb49401231cb7c929698195 360 Pfam PF01168 Alanine racemase, N-terminal domain 11 222 1.1E-68 T 10-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0302 fff2df3caeb49401231cb7c929698195 360 PRINTS PR00992 Alanine racemase signature 63 81 2.8E-72 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0302 fff2df3caeb49401231cb7c929698195 360 PRINTS PR00992 Alanine racemase signature 158 169 2.8E-72 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0302 fff2df3caeb49401231cb7c929698195 360 PRINTS PR00992 Alanine racemase signature 195 222 2.8E-72 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0302 fff2df3caeb49401231cb7c929698195 360 PRINTS PR00992 Alanine racemase signature 123 135 2.8E-72 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0302 fff2df3caeb49401231cb7c929698195 360 PRINTS PR00992 Alanine racemase signature 342 355 2.8E-72 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0302 fff2df3caeb49401231cb7c929698195 360 PRINTS PR00992 Alanine racemase signature 269 284 2.8E-72 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0302 fff2df3caeb49401231cb7c929698195 360 PRINTS PR00992 Alanine racemase signature 252 267 2.8E-72 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0302 fff2df3caeb49401231cb7c929698195 360 PRINTS PR00992 Alanine racemase signature 290 307 2.8E-72 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0302 fff2df3caeb49401231cb7c929698195 360 PRINTS PR00992 Alanine racemase signature 29 45 2.8E-72 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0302 fff2df3caeb49401231cb7c929698195 360 SMART SM01005 236 360 7.3E-69 T 10-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0302 fff2df3caeb49401231cb7c929698195 360 Gene3D G3DSA:2.40.37.10 11 355 6.8E-130 T 10-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VF_0302 fff2df3caeb49401231cb7c929698195 360 TIGRFAM TIGR00492 alr: alanine racemase 6 359 1.1E-126 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0302 fff2df3caeb49401231cb7c929698195 360 Pfam PF00842 Alanine racemase, C-terminal domain 237 359 5.9E-42 T 10-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0302 fff2df3caeb49401231cb7c929698195 360 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 34 44 - T 10-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_A0772 7da6c22037bad91974029d419ab8d0bc 206 Pfam PF01810 LysE type translocator 15 204 3.3E-23 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_A0772 7da6c22037bad91974029d419ab8d0bc 206 PIRSF PIRSF006324 1 206 9.9E-43 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_0366 31a4e796ccf2ea5677b59fb390c4806f 154 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 2.0E-9 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0366 31a4e796ccf2ea5677b59fb390c4806f 154 Gene3D G3DSA:3.30.700.10 7 154 3.7E-14 T 10-10-2018 VF_0366 31a4e796ccf2ea5677b59fb390c4806f 154 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0366 31a4e796ccf2ea5677b59fb390c4806f 154 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 26 7.2E-8 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0366 31a4e796ccf2ea5677b59fb390c4806f 154 SUPERFAMILY SSF54523 7 84 1.02E-13 T 10-10-2018 VF_0248 527817a062b95cf288c016787e30625c 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 10-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0248 527817a062b95cf288c016787e30625c 104 SMART SM00739 4 31 8.6E-4 T 10-10-2018 IPR005824 KOW VF_0248 527817a062b95cf288c016787e30625c 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 2.5E-39 T 10-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0248 527817a062b95cf288c016787e30625c 104 SUPERFAMILY SSF50104 4 101 1.07E-32 T 10-10-2018 IPR008991 Translation protein SH3-like domain superfamily VF_0248 527817a062b95cf288c016787e30625c 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 19.878 T 10-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0248 527817a062b95cf288c016787e30625c 104 Gene3D G3DSA:2.30.30.30 2 104 2.4E-39 T 10-10-2018 IPR014722 Ribosomal protein L2, domain 2 VF_0248 527817a062b95cf288c016787e30625c 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 103 1.3E-23 T 10-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0219 c724462677eea2d6971625fdf2221e17 180 Hamap MF_01415 Glutathione-regulated potassium-efflux system ancillary protein KefG [kefG]. 1 179 48.481 T 10-10-2018 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 VF_0219 c724462677eea2d6971625fdf2221e17 180 Pfam PF02525 Flavodoxin-like fold 6 172 3.7E-42 T 10-10-2018 IPR003680 Flavodoxin-like fold VF_0219 c724462677eea2d6971625fdf2221e17 180 SUPERFAMILY SSF52218 5 175 1.57E-47 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_0219 c724462677eea2d6971625fdf2221e17 180 Gene3D G3DSA:3.40.50.360 5 177 2.6E-54 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_1610 b87e3e9f86f3c3057fdc25ff6b0d6e1f 273 Gene3D G3DSA:3.40.190.10 99 233 1.0E-81 T 10-10-2018 VF_1610 b87e3e9f86f3c3057fdc25ff6b0d6e1f 273 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 6 271 3.4E-76 T 10-10-2018 IPR011862 Phosphate binding protein GO:0042301 VF_1610 b87e3e9f86f3c3057fdc25ff6b0d6e1f 273 Gene3D G3DSA:3.40.190.10 30 270 1.0E-81 T 10-10-2018 VF_1610 b87e3e9f86f3c3057fdc25ff6b0d6e1f 273 Pfam PF12849 PBP superfamily domain 22 258 5.6E-41 T 10-10-2018 IPR024370 PBP domain VF_1610 b87e3e9f86f3c3057fdc25ff6b0d6e1f 273 SUPERFAMILY SSF53850 17 273 5.83E-71 T 10-10-2018 VF_2091 73384d2367d38c78ae6a383fbd6985f1 308 Pfam PF17188 MucB/RseB C-terminal domain 202 296 3.9E-29 T 10-10-2018 IPR033436 MucB/RseB, C-terminal VF_2091 73384d2367d38c78ae6a383fbd6985f1 308 PIRSF PIRSF005427 1 303 1.1E-83 T 10-10-2018 IPR005588 MucB/RseB VF_2091 73384d2367d38c78ae6a383fbd6985f1 308 Gene3D G3DSA:2.50.20.10 7 193 2.0E-48 T 10-10-2018 VF_2091 73384d2367d38c78ae6a383fbd6985f1 308 Pfam PF03888 MucB/RseB N-terminal domain 9 179 2.0E-55 T 10-10-2018 IPR033434 MucB/RseB, N-terminal VF_2091 73384d2367d38c78ae6a383fbd6985f1 308 Gene3D G3DSA:3.30.200.100 202 302 1.0E-29 T 10-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily VF_A0763 373cfcd82f28bce52c03abc045511512 246 Gene3D G3DSA:3.40.50.720 1 245 2.8E-46 T 10-10-2018 VF_A0763 373cfcd82f28bce52c03abc045511512 246 SUPERFAMILY SSF51735 3 243 1.26E-48 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0763 373cfcd82f28bce52c03abc045511512 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VF_A0763 373cfcd82f28bce52c03abc045511512 246 Pfam PF00106 short chain dehydrogenase 3 186 6.3E-36 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0763 373cfcd82f28bce52c03abc045511512 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 2.8E-18 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0763 373cfcd82f28bce52c03abc045511512 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 2.8E-18 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0763 373cfcd82f28bce52c03abc045511512 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 2.8E-18 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0763 373cfcd82f28bce52c03abc045511512 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 2.8E-18 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0763 373cfcd82f28bce52c03abc045511512 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 2.8E-18 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1066 85b937268cdf83020d9e0dc99264208f 300 SUPERFAMILY SSF53850 88 296 9.95E-45 T 10-10-2018 VF_1066 85b937268cdf83020d9e0dc99264208f 300 SUPERFAMILY SSF46785 4 112 1.91E-22 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1066 85b937268cdf83020d9e0dc99264208f 300 Pfam PF03466 LysR substrate binding domain 89 291 8.2E-40 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1066 85b937268cdf83020d9e0dc99264208f 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.4E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1066 85b937268cdf83020d9e0dc99264208f 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.4E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1066 85b937268cdf83020d9e0dc99264208f 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.4E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1066 85b937268cdf83020d9e0dc99264208f 300 Gene3D G3DSA:1.10.10.10 3 89 1.3E-28 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1066 85b937268cdf83020d9e0dc99264208f 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 7.1E-22 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1066 85b937268cdf83020d9e0dc99264208f 300 Gene3D G3DSA:3.40.190.290 91 292 1.2E-60 T 10-10-2018 VF_A0804 814dcb380cdfbe38291e270e38d040b8 220 Pfam PF06912 Protein of unknown function (DUF1275) 14 208 1.3E-29 T 10-10-2018 IPR010699 Protein of unknown function DUF1275 VF_1579 b0d13824116bd5c0f593bc6c1caa29c4 354 Gene3D G3DSA:3.40.50.1100 51 157 1.9E-66 T 10-10-2018 VF_1579 b0d13824116bd5c0f593bc6c1caa29c4 354 Gene3D G3DSA:3.40.50.1100 24 324 1.9E-66 T 10-10-2018 VF_1579 b0d13824116bd5c0f593bc6c1caa29c4 354 SUPERFAMILY SSF53686 23 335 6.02E-70 T 10-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VF_1579 b0d13824116bd5c0f593bc6c1caa29c4 354 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 35 316 1.2E-40 T 10-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VF_1091 7ef17f27142274f190648b814b3650ab 524 SUPERFAMILY SSF58104 268 524 4.8E-62 T 10-10-2018 VF_1091 7ef17f27142274f190648b814b3650ab 524 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 310 485 5.2E-37 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1091 7ef17f27142274f190648b814b3650ab 524 SMART SM00283 262 523 1.0E-59 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1091 7ef17f27142274f190648b814b3650ab 524 Gene3D G3DSA:1.10.287.950 204 524 5.6E-60 T 10-10-2018 VF_1803 77d890da92363bc8ce19b09e4c4d0332 177 Pfam PF02308 MgtC family 24 144 2.3E-27 T 10-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VF_1803 77d890da92363bc8ce19b09e4c4d0332 177 PRINTS PR01837 MgtC/SapB protein signature 71 93 6.1E-29 T 10-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VF_1803 77d890da92363bc8ce19b09e4c4d0332 177 PRINTS PR01837 MgtC/SapB protein signature 98 122 6.1E-29 T 10-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VF_1803 77d890da92363bc8ce19b09e4c4d0332 177 PRINTS PR01837 MgtC/SapB protein signature 44 62 6.1E-29 T 10-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VF_1803 77d890da92363bc8ce19b09e4c4d0332 177 PRINTS PR01837 MgtC/SapB protein signature 25 44 6.1E-29 T 10-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VF_2181 6fe791de5c43a12096dfaf401b1df6f8 887 Gene3D G3DSA:3.40.50.920 707 887 1.3E-70 T 10-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VF_2181 6fe791de5c43a12096dfaf401b1df6f8 887 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 4 886 0.0 T 10-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 VF_2181 6fe791de5c43a12096dfaf401b1df6f8 887 Gene3D G3DSA:3.40.50.970 472 706 1.1E-110 T 10-10-2018 VF_2181 6fe791de5c43a12096dfaf401b1df6f8 887 SUPERFAMILY SSF52922 702 886 1.92E-57 T 10-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VF_2181 6fe791de5c43a12096dfaf401b1df6f8 887 SUPERFAMILY SSF52518 474 701 1.41E-96 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_2181 6fe791de5c43a12096dfaf401b1df6f8 887 PIRSF PIRSF000156 1 887 0.0 T 10-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 VF_2181 6fe791de5c43a12096dfaf401b1df6f8 887 SUPERFAMILY SSF52518 56 469 7.52E-141 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold VF_2181 6fe791de5c43a12096dfaf401b1df6f8 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 360 427 9.1E-6 T 10-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VF_2181 6fe791de5c43a12096dfaf401b1df6f8 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 103 299 3.5E-10 T 10-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VF_2181 6fe791de5c43a12096dfaf401b1df6f8 887 Gene3D G3DSA:3.40.50.970 55 471 1.6E-133 T 10-10-2018 VF_1211 7f73929d915f5dacb422dd8ca09883a0 96 Gene3D G3DSA:3.30.70.100 1 95 2.5E-26 T 10-10-2018 VF_1211 7f73929d915f5dacb422dd8ca09883a0 96 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 73 5.8E-14 T 10-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain VF_1211 7f73929d915f5dacb422dd8ca09883a0 96 SUPERFAMILY SSF54909 1 95 4.54E-27 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel VF_0532 274be12a3e3559848db5cf23ed7133ca 413 Gene3D G3DSA:1.10.4160.10 4 412 1.4E-47 T 10-10-2018 IPR038271 Purine-cytosine permease superfamily VF_0532 274be12a3e3559848db5cf23ed7133ca 413 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 11 397 1.8E-63 T 10-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 VF_0106 121caf9ee27e9a2634c7182058d5c435 207 SMART SM00072 3 187 1.0E-71 T 10-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit VF_0106 121caf9ee27e9a2634c7182058d5c435 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 4 184 6.4E-75 T 10-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 VF_0106 121caf9ee27e9a2634c7182058d5c435 207 Pfam PF00625 Guanylate kinase 5 185 5.9E-60 T 10-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit VF_0106 121caf9ee27e9a2634c7182058d5c435 207 Gene3D G3DSA:3.40.50.300 8 183 6.7E-73 T 10-10-2018 VF_0106 121caf9ee27e9a2634c7182058d5c435 207 SUPERFAMILY SSF52540 3 189 7.72E-70 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0106 121caf9ee27e9a2634c7182058d5c435 207 Gene3D G3DSA:3.30.63.10 37 96 6.7E-73 T 10-10-2018 VF_0106 121caf9ee27e9a2634c7182058d5c435 207 Hamap MF_00328 Guanylate kinase [gmk]. 2 187 37.765 T 10-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 VF_0106 121caf9ee27e9a2634c7182058d5c435 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 10-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 VF_1025 8463b0eafe204b1f58700927eda57d19 181 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 177 8.6E-66 T 10-10-2018 IPR006008 Intracellular septation protein A GO:0016021 VF_1025 8463b0eafe204b1f58700927eda57d19 181 Pfam PF04279 Intracellular septation protein A 1 174 6.3E-69 T 10-10-2018 IPR006008 Intracellular septation protein A GO:0016021 VF_1025 8463b0eafe204b1f58700927eda57d19 181 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 175 18.605 T 10-10-2018 IPR006008 Intracellular septation protein A GO:0016021 VF_2246 5d01b2e41c4e5201a6c632f636b0e748 162 Gene3D G3DSA:3.30.70.560 1 156 7.1E-34 T 10-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VF_2246 5d01b2e41c4e5201a6c632f636b0e748 162 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 129 2.5E-24 T 10-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VF_2246 5d01b2e41c4e5201a6c632f636b0e748 162 SUPERFAMILY SSF55083 1 151 4.32E-38 T 10-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VF_2246 5d01b2e41c4e5201a6c632f636b0e748 162 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 129 2.4E-28 T 10-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VF_2297 4f949bae4ca1e47e7d686e1c3e2c4674 333 Gene3D G3DSA:3.30.420.40 8 326 7.3E-43 T 10-10-2018 VF_2297 4f949bae4ca1e47e7d686e1c3e2c4674 333 Gene3D G3DSA:3.30.420.40 181 293 7.3E-43 T 10-10-2018 VF_2297 4f949bae4ca1e47e7d686e1c3e2c4674 333 Pfam PF11104 Type IV pilus assembly protein PilM; 8 327 1.7E-47 T 10-10-2018 IPR005883 Type IV pilus assembly protein PilM VF_2297 4f949bae4ca1e47e7d686e1c3e2c4674 333 SUPERFAMILY SSF53067 6 161 1.66E-6 T 10-10-2018 VF_2297 4f949bae4ca1e47e7d686e1c3e2c4674 333 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 6 328 1.5E-53 T 10-10-2018 IPR005883 Type IV pilus assembly protein PilM VF_2297 4f949bae4ca1e47e7d686e1c3e2c4674 333 SUPERFAMILY SSF53067 183 327 2.92E-5 T 10-10-2018 VF_2297 4f949bae4ca1e47e7d686e1c3e2c4674 333 PIRSF PIRSF019169 1 329 1.0E-83 T 10-10-2018 IPR005883 Type IV pilus assembly protein PilM VF_2297 4f949bae4ca1e47e7d686e1c3e2c4674 333 Gene3D G3DSA:3.30.1490.300 82 142 7.3E-43 T 10-10-2018 VF_A0323 c57cce4863b41fd18aa2a280fbc36148 270 SMART SM00267 117 264 5.9E-8 T 10-10-2018 IPR000160 GGDEF domain VF_A0323 c57cce4863b41fd18aa2a280fbc36148 270 Gene3D G3DSA:3.30.70.270 116 263 4.0E-22 T 10-10-2018 VF_A0323 c57cce4863b41fd18aa2a280fbc36148 270 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 124 260 1.3E-17 T 10-10-2018 IPR000160 GGDEF domain VF_A0323 c57cce4863b41fd18aa2a280fbc36148 270 SUPERFAMILY SSF55073 133 259 4.39E-21 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0323 c57cce4863b41fd18aa2a280fbc36148 270 Pfam PF00990 Diguanylate cyclase, GGDEF domain 130 260 5.0E-16 T 10-10-2018 IPR000160 GGDEF domain VF_2288 592ebd60e85bff37ff7a0c2fdf4c99cb 225 PIRSF PIRSF001461 1 225 7.4E-107 T 10-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VF_2288 592ebd60e85bff37ff7a0c2fdf4c99cb 225 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 10-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VF_2288 592ebd60e85bff37ff7a0c2fdf4c99cb 225 SUPERFAMILY SSF51366 4 218 7.85E-79 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VF_2288 592ebd60e85bff37ff7a0c2fdf4c99cb 225 Gene3D G3DSA:3.20.20.70 5 222 1.5E-88 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_2288 592ebd60e85bff37ff7a0c2fdf4c99cb 225 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 5 216 2.7E-101 T 10-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VF_2288 592ebd60e85bff37ff7a0c2fdf4c99cb 225 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 10-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VF_2288 592ebd60e85bff37ff7a0c2fdf4c99cb 225 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 1.3E-92 T 10-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VF_A0427 c32f35e138050bee069cdd2c5f9c9822 249 Pfam PF02348 Cytidylyltransferase 5 221 1.6E-66 T 10-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 VF_A0427 c32f35e138050bee069cdd2c5f9c9822 249 SUPERFAMILY SSF53448 3 247 8.11E-66 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_A0427 c32f35e138050bee069cdd2c5f9c9822 249 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 241 2.3E-116 T 10-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 VF_A0427 c32f35e138050bee069cdd2c5f9c9822 249 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 248 47.048 T 10-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 VF_A0427 c32f35e138050bee069cdd2c5f9c9822 249 Gene3D G3DSA:3.90.550.10 1 249 2.9E-98 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_1588 0582e99b50df646d6b5a02eaf9e18b84 256 PIRSF PIRSF039085 3 256 6.7E-120 T 10-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VF_1588 0582e99b50df646d6b5a02eaf9e18b84 256 SUPERFAMILY SSF52540 7 251 3.51E-76 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1588 0582e99b50df646d6b5a02eaf9e18b84 256 SMART SM00382 31 229 6.0E-16 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1588 0582e99b50df646d6b5a02eaf9e18b84 256 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1588 0582e99b50df646d6b5a02eaf9e18b84 256 Pfam PF00005 ABC transporter 22 181 4.0E-32 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1588 0582e99b50df646d6b5a02eaf9e18b84 256 Gene3D G3DSA:3.40.50.300 3 255 5.3E-75 T 10-10-2018 VF_1143 bbbe096318ad3fdbcb2095da619fba4f 429 SUPERFAMILY SSF51905 2 346 1.17E-27 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_1143 bbbe096318ad3fdbcb2095da619fba4f 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 6.1E-7 T 10-10-2018 VF_1143 bbbe096318ad3fdbcb2095da619fba4f 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 167 192 6.1E-7 T 10-10-2018 VF_1143 bbbe096318ad3fdbcb2095da619fba4f 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 6.1E-7 T 10-10-2018 VF_1143 bbbe096318ad3fdbcb2095da619fba4f 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 5.5E-13 T 10-10-2018 VF_1143 bbbe096318ad3fdbcb2095da619fba4f 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 5.5E-13 T 10-10-2018 VF_1143 bbbe096318ad3fdbcb2095da619fba4f 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 5.5E-13 T 10-10-2018 VF_1143 bbbe096318ad3fdbcb2095da619fba4f 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 167 185 5.5E-13 T 10-10-2018 VF_1143 bbbe096318ad3fdbcb2095da619fba4f 429 Gene3D G3DSA:3.50.50.100 1 406 2.6E-114 T 10-10-2018 VF_1143 bbbe096318ad3fdbcb2095da619fba4f 429 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 333 3.9E-62 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VF_0040 edcde0fea446b162e0e48aca67222425 321 Gene3D G3DSA:1.10.10.10 2 91 1.1E-28 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0040 edcde0fea446b162e0e48aca67222425 321 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 5.0E-17 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0040 edcde0fea446b162e0e48aca67222425 321 Pfam PF03466 LysR substrate binding domain 98 309 2.5E-24 T 10-10-2018 IPR005119 LysR, substrate-binding VF_0040 edcde0fea446b162e0e48aca67222425 321 SUPERFAMILY SSF46785 8 88 7.48E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0040 edcde0fea446b162e0e48aca67222425 321 Gene3D G3DSA:3.40.190.10 182 280 2.4E-56 T 10-10-2018 VF_0040 edcde0fea446b162e0e48aca67222425 321 Gene3D G3DSA:3.40.190.10 94 304 2.4E-56 T 10-10-2018 VF_0040 edcde0fea446b162e0e48aca67222425 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 3.7E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0040 edcde0fea446b162e0e48aca67222425 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 3.7E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0040 edcde0fea446b162e0e48aca67222425 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 3.7E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0040 edcde0fea446b162e0e48aca67222425 321 SUPERFAMILY SSF53850 92 308 1.27E-44 T 10-10-2018 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 2 626 46.713 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 171 1.7E-16 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 SMART SM00387 27 173 5.4E-19 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 556 618 1.2E-27 T 10-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 3 623 0.0 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 Gene3D G3DSA:3.40.50.670 390 621 1.2E-92 T 10-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 Gene3D G3DSA:3.30.565.10 2 215 3.8E-74 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 SUPERFAMILY SSF55874 5 215 6.6E-65 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 Gene3D G3DSA:3.30.230.10 216 389 2.7E-55 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR01098 Topoisomerase IV subunit B signature 311 326 3.4E-130 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 3.4E-130 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 3.4E-130 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 3.4E-130 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR01098 Topoisomerase IV subunit B signature 26 39 3.4E-130 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR01098 Topoisomerase IV subunit B signature 135 149 3.4E-130 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 3.4E-130 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 3.4E-130 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR01098 Topoisomerase IV subunit B signature 294 310 3.4E-130 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 3.4E-130 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR01098 Topoisomerase IV subunit B signature 149 164 3.4E-130 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR01098 Topoisomerase IV subunit B signature 338 361 3.4E-130 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR01098 Topoisomerase IV subunit B signature 362 387 3.4E-130 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 3.4E-130 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 Pfam PF01751 Toprim domain 413 522 1.2E-12 T 10-10-2018 IPR006171 TOPRIM domain VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 SMART SM00433 34 622 2.6E-215 T 10-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 ProSitePatterns PS00177 DNA topoisomerase II signature. 416 424 - T 10-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 SUPERFAMILY SSF54211 217 382 1.42E-45 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR00418 DNA topoisomerase II family signature 109 123 7.8E-58 T 10-10-2018 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR00418 DNA topoisomerase II family signature 560 576 7.8E-58 T 10-10-2018 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR00418 DNA topoisomerase II family signature 31 46 7.8E-58 T 10-10-2018 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR00418 DNA topoisomerase II family signature 497 514 7.8E-58 T 10-10-2018 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR00418 DNA topoisomerase II family signature 517 529 7.8E-58 T 10-10-2018 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR00418 DNA topoisomerase II family signature 266 279 7.8E-58 T 10-10-2018 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR00418 DNA topoisomerase II family signature 414 428 7.8E-58 T 10-10-2018 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR00418 DNA topoisomerase II family signature 66 79 7.8E-58 T 10-10-2018 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 PRINTS PR00418 DNA topoisomerase II family signature 479 495 7.8E-58 T 10-10-2018 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 Pfam PF00204 DNA gyrase B 218 384 1.1E-39 T 10-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VF_2228 83aa7671ee31cc918bb31a2ba2ea0308 626 SUPERFAMILY SSF56719 388 619 5.75E-79 T 10-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VF_2002 25332df2a2b421d1436887e12a747a37 161 Pfam PF01668 SmpB protein 15 157 1.1E-55 T 10-10-2018 IPR000037 SsrA-binding protein GO:0003723 VF_2002 25332df2a2b421d1436887e12a747a37 161 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 15 139 4.0E-61 T 10-10-2018 IPR000037 SsrA-binding protein GO:0003723 VF_2002 25332df2a2b421d1436887e12a747a37 161 ProSitePatterns PS01317 SsrA-binding protein. 33 45 - T 10-10-2018 IPR020081 SsrA-binding protein, conserved site VF_2002 25332df2a2b421d1436887e12a747a37 161 Hamap MF_00023 SsrA-binding protein [smpB]. 1 161 67.577 T 10-10-2018 IPR000037 SsrA-binding protein GO:0003723 VF_2002 25332df2a2b421d1436887e12a747a37 161 SUPERFAMILY SSF74982 8 139 4.45E-48 T 10-10-2018 IPR023620 Small protein B VF_2002 25332df2a2b421d1436887e12a747a37 161 TIGRFAM TIGR00086 smpB: SsrA-binding protein 15 157 5.1E-51 T 10-10-2018 IPR000037 SsrA-binding protein GO:0003723 VF_2002 25332df2a2b421d1436887e12a747a37 161 Gene3D G3DSA:2.40.280.10 7 136 1.4E-44 T 10-10-2018 IPR023620 Small protein B VF_2566 3ba8c8ba29736451813d1f4f27260bf1 513 SUPERFAMILY SSF52540 96 381 1.16E-93 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2566 3ba8c8ba29736451813d1f4f27260bf1 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 1.8E-43 T 10-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2566 3ba8c8ba29736451813d1f4f27260bf1 513 Gene3D G3DSA:1.20.150.20 383 513 6.4E-47 T 10-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2566 3ba8c8ba29736451813d1f4f27260bf1 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 92 7.6E-13 T 10-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_2566 3ba8c8ba29736451813d1f4f27260bf1 513 SUPERFAMILY SSF50615 10 94 2.94E-25 T 10-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_2566 3ba8c8ba29736451813d1f4f27260bf1 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 6.3E-71 T 10-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_2566 3ba8c8ba29736451813d1f4f27260bf1 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 49.167 T 10-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2566 3ba8c8ba29736451813d1f4f27260bf1 513 Gene3D G3DSA:2.40.30.20 1 93 9.8E-29 T 10-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_2566 3ba8c8ba29736451813d1f4f27260bf1 513 SUPERFAMILY SSF47917 383 511 7.59E-45 T 10-10-2018 VF_2566 3ba8c8ba29736451813d1f4f27260bf1 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 10-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_2566 3ba8c8ba29736451813d1f4f27260bf1 513 Gene3D G3DSA:3.40.50.300 94 382 2.2E-128 T 10-10-2018 VF_2566 3ba8c8ba29736451813d1f4f27260bf1 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 512 1.6E-248 T 10-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_0833 7478c266103a066a9974534e08a2e2e9 75 Gene3D G3DSA:2.30.30.90 1 75 4.6E-21 T 10-10-2018 IPR038157 Ferrous iron transporter, core domain VF_0833 7478c266103a066a9974534e08a2e2e9 75 SUPERFAMILY SSF50037 5 74 6.64E-18 T 10-10-2018 IPR008988 Transcriptional repressor, C-terminal VF_0833 7478c266103a066a9974534e08a2e2e9 75 Pfam PF04023 FeoA domain 1 73 5.7E-16 T 10-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 VF_0833 7478c266103a066a9974534e08a2e2e9 75 SMART SM00899 1 74 5.7E-20 T 10-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 VF_2096 049a0b5a82e7dd7fcce21cef3a6be1fc 86 SUPERFAMILY SSF109910 3 79 1.19E-26 T 10-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily VF_2096 049a0b5a82e7dd7fcce21cef3a6be1fc 86 Pfam PF03937 Flavinator of succinate dehydrogenase 7 77 2.7E-25 T 10-10-2018 IPR005631 Flavinator of succinate dehydrogenase VF_2096 049a0b5a82e7dd7fcce21cef3a6be1fc 86 Gene3D G3DSA:1.10.150.250 1 86 4.9E-36 T 10-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily VF_A0211 b1410e8edaa8b3746491325a839a0a60 228 Gene3D G3DSA:1.10.10.10 123 227 2.0E-17 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0211 b1410e8edaa8b3746491325a839a0a60 228 SUPERFAMILY SSF52172 1 175 1.85E-36 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0211 b1410e8edaa8b3746491325a839a0a60 228 Gene3D G3DSA:3.40.50.2300 1 121 8.9E-34 T 10-10-2018 VF_A0211 b1410e8edaa8b3746491325a839a0a60 228 SMART SM00862 146 221 3.1E-7 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0211 b1410e8edaa8b3746491325a839a0a60 228 SMART SM00448 1 112 3.8E-41 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0211 b1410e8edaa8b3746491325a839a0a60 228 Pfam PF00072 Response regulator receiver domain 3 112 5.5E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0211 b1410e8edaa8b3746491325a839a0a60 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 220 1.5E-12 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 444 47.103 T 10-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 Gene3D G3DSA:3.40.120.10 257 339 1.8E-65 T 10-10-2018 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 SUPERFAMILY SSF53738 156 255 3.85E-31 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 Gene3D G3DSA:3.40.120.10 174 362 1.8E-65 T 10-10-2018 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 366 4.6E-31 T 10-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 135 6.1E-45 T 10-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 441 1.7E-16 T 10-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 SUPERFAMILY SSF55957 357 443 7.33E-25 T 10-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 Gene3D G3DSA:3.40.120.10 3 154 1.5E-47 T 10-10-2018 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 443 2.3E-198 T 10-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 Gene3D G3DSA:3.30.310.50 370 445 7.4E-27 T 10-10-2018 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 10-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 SUPERFAMILY SSF53738 258 365 2.08E-30 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 252 1.6E-20 T 10-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 1.3E-14 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 1.3E-14 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 1.3E-14 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_0481 a0099765fa3e0ccc3ee9e518f4d22149 445 SUPERFAMILY SSF53738 2 181 2.94E-48 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VF_1925 64226aacda503a7ebb89e48da544c828 391 Pfam PF09839 Uncharacterized protein conserved in bacteria (DUF2066) 18 250 1.3E-63 T 10-10-2018 IPR018642 Protein of unknown function DUF2066 VF_2399 6f18fc589a113773bd8465acf319621b 197 Pfam PF04222 Protein of unknown function (DUF416) 5 194 1.8E-77 T 10-10-2018 IPR007338 Protein of unknown function DUF416 VF_2399 6f18fc589a113773bd8465acf319621b 197 Gene3D G3DSA:1.20.1590.10 3 195 9.9E-66 T 10-10-2018 IPR023381 YP001051499.1-like domain superfamily VF_2456 3c845df0a0a7a2f3c890176192afb9bd 197 Pfam PF01914 MarC family integral membrane protein 5 193 8.6E-54 T 10-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 VF_A0043 e71f82eeb93073b9b3e5f458721cd393 247 Gene3D G3DSA:1.10.357.10 3 164 2.6E-21 T 10-10-2018 VF_A0043 e71f82eeb93073b9b3e5f458721cd393 247 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 5.1E-6 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_A0043 e71f82eeb93073b9b3e5f458721cd393 247 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 5.1E-6 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_A0043 e71f82eeb93073b9b3e5f458721cd393 247 SUPERFAMILY SSF46689 9 87 1.03E-15 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0043 e71f82eeb93073b9b3e5f458721cd393 247 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 65 1.4E-10 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_1086 9cab31e1f3d383a33747fd69fdec9f79 285 Gene3D G3DSA:1.10.10.10 1 102 3.5E-19 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1086 9cab31e1f3d383a33747fd69fdec9f79 285 SMART SM00862 23 98 3.1E-10 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_1086 9cab31e1f3d383a33747fd69fdec9f79 285 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 98 1.0E-12 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_1086 9cab31e1f3d383a33747fd69fdec9f79 285 SUPERFAMILY SSF46894 4 98 2.44E-15 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_1954 7d414a4c1352e11730bfcbebbe0bf28a 809 Gene3D G3DSA:3.10.20.310 17 91 2.7E-18 T 10-10-2018 VF_1954 7d414a4c1352e11730bfcbebbe0bf28a 809 Gene3D G3DSA:2.40.160.50 426 809 9.5E-118 T 10-10-2018 VF_1954 7d414a4c1352e11730bfcbebbe0bf28a 809 Gene3D G3DSA:3.10.20.310 264 346 2.3E-15 T 10-10-2018 VF_1954 7d414a4c1352e11730bfcbebbe0bf28a 809 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 24 809 2.5E-274 T 10-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 VF_1954 7d414a4c1352e11730bfcbebbe0bf28a 809 Pfam PF07244 Surface antigen variable number repeat 348 420 2.4E-16 T 10-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VF_1954 7d414a4c1352e11730bfcbebbe0bf28a 809 Pfam PF07244 Surface antigen variable number repeat 92 172 7.6E-11 T 10-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VF_1954 7d414a4c1352e11730bfcbebbe0bf28a 809 Pfam PF07244 Surface antigen variable number repeat 266 344 1.2E-10 T 10-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VF_1954 7d414a4c1352e11730bfcbebbe0bf28a 809 Pfam PF07244 Surface antigen variable number repeat 176 263 2.3E-15 T 10-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VF_1954 7d414a4c1352e11730bfcbebbe0bf28a 809 Gene3D G3DSA:3.10.20.310 347 425 2.7E-25 T 10-10-2018 VF_1954 7d414a4c1352e11730bfcbebbe0bf28a 809 Pfam PF01103 Surface antigen 448 809 1.5E-85 T 10-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 VF_1954 7d414a4c1352e11730bfcbebbe0bf28a 809 Gene3D G3DSA:3.10.20.310 175 263 4.0E-23 T 10-10-2018 VF_1954 7d414a4c1352e11730bfcbebbe0bf28a 809 PIRSF PIRSF006076 1 809 6.9E-241 T 10-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 VF_1954 7d414a4c1352e11730bfcbebbe0bf28a 809 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 2 809 25.851 T 10-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 VF_1954 7d414a4c1352e11730bfcbebbe0bf28a 809 Gene3D G3DSA:3.10.20.310 92 174 2.7E-16 T 10-10-2018 VF_0954 f949488d4a4802ef8ed3b595ce823bfe 378 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 378 1.3E-172 T 10-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 VF_0954 f949488d4a4802ef8ed3b595ce823bfe 378 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 360 1.9E-109 T 10-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 VF_0954 f949488d4a4802ef8ed3b595ce823bfe 378 PIRSF PIRSF000267 2 377 8.0E-126 T 10-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 VF_A1022 0127adbb71a81432b0b4cd5de20be966 703 Gene3D G3DSA:3.10.560.10 100 180 9.0E-17 T 10-10-2018 VF_A1022 0127adbb71a81432b0b4cd5de20be966 703 Pfam PF10531 SLBB domain 498 541 9.7E-4 T 10-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A1022 0127adbb71a81432b0b4cd5de20be966 703 Pfam PF10531 SLBB domain 210 253 2.3E-6 T 10-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A1022 0127adbb71a81432b0b4cd5de20be966 703 Pfam PF10531 SLBB domain 297 349 3.1E-13 T 10-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A1022 0127adbb71a81432b0b4cd5de20be966 703 Pfam PF10531 SLBB domain 103 149 4.4E-5 T 10-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A1022 0127adbb71a81432b0b4cd5de20be966 703 Pfam PF10531 SLBB domain 394 436 2.8E-7 T 10-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A1022 0127adbb71a81432b0b4cd5de20be966 703 Pfam PF10531 SLBB domain 593 635 1.1E-8 T 10-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_A1022 0127adbb71a81432b0b4cd5de20be966 703 Gene3D G3DSA:3.30.1950.10 44 99 9.0E-17 T 10-10-2018 VF_A1022 0127adbb71a81432b0b4cd5de20be966 703 Gene3D G3DSA:3.10.560.10 584 674 1.1E-17 T 10-10-2018 VF_A1022 0127adbb71a81432b0b4cd5de20be966 703 Gene3D G3DSA:3.10.560.10 485 579 4.8E-16 T 10-10-2018 VF_A1022 0127adbb71a81432b0b4cd5de20be966 703 Gene3D G3DSA:3.10.560.10 287 376 3.5E-16 T 10-10-2018 VF_A1022 0127adbb71a81432b0b4cd5de20be966 703 Gene3D G3DSA:3.10.560.10 386 477 2.3E-11 T 10-10-2018 VF_A1022 0127adbb71a81432b0b4cd5de20be966 703 Gene3D G3DSA:3.10.560.10 199 286 1.1E-15 T 10-10-2018 VF_A1022 0127adbb71a81432b0b4cd5de20be966 703 Pfam PF02563 Polysaccharide biosynthesis/export protein 22 91 1.0E-7 T 10-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 VF_A0249 e00bf6f57feccc9616ad62742200f78c 455 Gene3D G3DSA:3.50.50.60 2 86 5.7E-9 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0249 e00bf6f57feccc9616ad62742200f78c 455 PIRSF PIRSF000141 1 441 1.1E-188 T 10-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 VF_A0249 e00bf6f57feccc9616ad62742200f78c 455 SUPERFAMILY SSF51905 1 439 5.53E-20 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0249 e00bf6f57feccc9616ad62742200f78c 455 TIGRFAM TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit 3 435 5.1E-192 T 10-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 VF_A0249 e00bf6f57feccc9616ad62742200f78c 455 Pfam PF00890 FAD binding domain 4 422 2.7E-55 T 10-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_A0249 e00bf6f57feccc9616ad62742200f78c 455 Hamap MF_00753 Anaerobic glycerol-3-phosphate dehydrogenase subunit B [glpB]. 1 438 43.108 T 10-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 277 287 1.0E-18 T 10-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 209 221 1.0E-18 T 10-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 88 97 1.0E-18 T 10-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 188 200 1.0E-18 T 10-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 160 174 1.0E-18 T 10-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 148 160 1.0E-18 T 10-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 216 231 - T 10-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 264 276 - T 10-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 109 129 3.5E-65 T 10-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 261 286 3.5E-65 T 10-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 237 258 3.5E-65 T 10-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 216 236 3.5E-65 T 10-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 90 109 3.5E-65 T 10-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 129 148 3.5E-65 T 10-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 92 287 4.8E-82 T 10-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VF_1842 5b1cf190b5e1f757ed127b3049e2580b 289 Pfam PF00813 FliP family 92 283 1.2E-78 T 10-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VF_0484 f68667fbc0cd837725f68d5ba3169696 151 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 151 24.053 T 10-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 VF_0484 f68667fbc0cd837725f68d5ba3169696 151 Pfam PF17384 RimP C-terminal SH3 domain 86 151 5.4E-20 T 10-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal VF_0484 f68667fbc0cd837725f68d5ba3169696 151 Pfam PF02576 RimP N-terminal domain 12 83 1.5E-27 T 10-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal VF_0484 f68667fbc0cd837725f68d5ba3169696 151 SUPERFAMILY SSF75420 2 83 3.27E-25 T 10-10-2018 IPR035956 RimP, N-terminal domain superfamily VF_0484 f68667fbc0cd837725f68d5ba3169696 151 Gene3D G3DSA:3.30.300.70 1 80 1.5E-24 T 10-10-2018 IPR035956 RimP, N-terminal domain superfamily VF_0484 f68667fbc0cd837725f68d5ba3169696 151 SUPERFAMILY SSF74942 84 151 5.1E-17 T 10-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily VF_1152 d2b42b3c0daf178132b4a1479f652a25 291 Pfam PF01435 Peptidase family M48 78 291 3.4E-37 T 10-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 VF_1152 d2b42b3c0daf178132b4a1479f652a25 291 Hamap MF_00188 Protease HtpX [htpX]. 1 291 25.771 T 10-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 VF_1152 d2b42b3c0daf178132b4a1479f652a25 291 Gene3D G3DSA:3.30.2010.10 68 161 2.4E-37 T 10-10-2018 VF_2660 18f9c262de2007bda4eae9e96bc1fa54 39 Pfam PF13627 Prokaryotic lipoprotein-attachment site 7 28 2.5E-10 T 10-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site VF_0446 3e6ea21e4d0790ccc7aebdba9f04f33c 437 Pfam PF05525 Branched-chain amino acid transport protein 8 427 2.1E-150 T 10-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 VF_0446 3e6ea21e4d0790ccc7aebdba9f04f33c 437 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 414 3.1E-134 T 10-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 VF_A1143 772c3080fa9d6f3c941352fb687cd534 156 Pfam PF05232 Chlorhexidine efflux transporter 71 133 4.8E-22 T 10-10-2018 IPR007896 Chlorhexidine efflux transporter VF_A1143 772c3080fa9d6f3c941352fb687cd534 156 Pfam PF05232 Chlorhexidine efflux transporter 4 65 5.6E-20 T 10-10-2018 IPR007896 Chlorhexidine efflux transporter VF_2250 894881ae7e252cda94411d7eb71a10e3 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.588 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2250 894881ae7e252cda94411d7eb71a10e3 71 Gene3D G3DSA:1.20.5.1150 16 54 1.4E-21 T 10-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2250 894881ae7e252cda94411d7eb71a10e3 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 44 2.0E-10 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2250 894881ae7e252cda94411d7eb71a10e3 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 7.2E-25 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2250 894881ae7e252cda94411d7eb71a10e3 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.6E-16 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2250 894881ae7e252cda94411d7eb71a10e3 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.6E-16 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2250 894881ae7e252cda94411d7eb71a10e3 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.6E-16 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2250 894881ae7e252cda94411d7eb71a10e3 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.6E-16 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2250 894881ae7e252cda94411d7eb71a10e3 71 Pfam PF01165 Ribosomal protein S21 4 56 4.4E-23 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2250 894881ae7e252cda94411d7eb71a10e3 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 10-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_A0159 6e75e879fc95609544c1d67a2efbae71 297 Gene3D G3DSA:3.40.50.1980 32 121 1.4E-27 T 10-10-2018 VF_A0159 6e75e879fc95609544c1d67a2efbae71 297 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 55 73 1.1E-16 T 10-10-2018 VF_A0159 6e75e879fc95609544c1d67a2efbae71 297 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 276 289 1.1E-16 T 10-10-2018 VF_A0159 6e75e879fc95609544c1d67a2efbae71 297 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 86 101 1.1E-16 T 10-10-2018 VF_A0159 6e75e879fc95609544c1d67a2efbae71 297 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 211 229 1.1E-16 T 10-10-2018 VF_A0159 6e75e879fc95609544c1d67a2efbae71 297 SUPERFAMILY SSF53807 33 295 3.26E-57 T 10-10-2018 VF_A0159 6e75e879fc95609544c1d67a2efbae71 297 Gene3D G3DSA:3.40.50.1980 124 297 1.7E-53 T 10-10-2018 VF_A0159 6e75e879fc95609544c1d67a2efbae71 297 Pfam PF01497 Periplasmic binding protein 38 274 8.4E-25 T 10-10-2018 IPR002491 ABC transporter periplasmic binding domain VF_0430 b338d6056ab624eaced967a17d075abf 236 Gene3D G3DSA:3.20.20.10 1 236 1.7E-85 T 10-10-2018 IPR029066 PLP-binding barrel VF_0430 b338d6056ab624eaced967a17d075abf 236 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 230 6.3E-89 T 10-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 VF_0430 b338d6056ab624eaced967a17d075abf 236 SUPERFAMILY SSF51419 1 228 3.14E-82 T 10-10-2018 IPR029066 PLP-binding barrel VF_0430 b338d6056ab624eaced967a17d075abf 236 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 80 94 - T 10-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 VF_0430 b338d6056ab624eaced967a17d075abf 236 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 229 34.61 T 10-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 VF_0430 b338d6056ab624eaced967a17d075abf 236 PIRSF PIRSF004848 1 236 8.6E-79 T 10-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 VF_0430 b338d6056ab624eaced967a17d075abf 236 Pfam PF01168 Alanine racemase, N-terminal domain 9 230 3.0E-32 T 10-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_2000 85da39df0016db4504a48d2e0412b261 103 Gene3D G3DSA:3.10.20.280 2 92 8.4E-33 T 10-10-2018 IPR037021 RnfH superfamily VF_2000 85da39df0016db4504a48d2e0412b261 103 Pfam PF03658 RnfH family Ubiquitin 8 90 9.8E-34 T 10-10-2018 IPR005346 RnfH protein VF_2000 85da39df0016db4504a48d2e0412b261 103 Hamap MF_00460 Protein RnfH [rnfH]. 8 98 24.8 T 10-10-2018 IPR005346 RnfH protein VF_2000 85da39df0016db4504a48d2e0412b261 103 SUPERFAMILY SSF54285 6 82 3.01E-25 T 10-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp VF_1847 2f6c7b069705030ef602239145404aec 416 Gene3D G3DSA:3.30.750.140 271 385 1.5E-32 T 10-10-2018 IPR038610 FliK-like, C-terminal domain superfamily VF_1847 2f6c7b069705030ef602239145404aec 416 PRINTS PR01007 Flagellar hook-length control protein signature 307 325 1.7E-9 T 10-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 VF_1847 2f6c7b069705030ef602239145404aec 416 PRINTS PR01007 Flagellar hook-length control protein signature 325 340 1.7E-9 T 10-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 VF_1847 2f6c7b069705030ef602239145404aec 416 PRINTS PR01007 Flagellar hook-length control protein signature 155 178 1.7E-9 T 10-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 VF_1847 2f6c7b069705030ef602239145404aec 416 PRINTS PR01007 Flagellar hook-length control protein signature 340 363 1.7E-9 T 10-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 VF_1847 2f6c7b069705030ef602239145404aec 416 Pfam PF02120 Flagellar hook-length control protein FliK 292 373 1.7E-24 T 10-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal VF_A0893 301f8bf0672fd122e511848bdf8ce86c 336 SUPERFAMILY SSF46689 293 335 4.21E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0893 301f8bf0672fd122e511848bdf8ce86c 336 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 45 205 2.2E-19 T 10-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal VF_A0893 301f8bf0672fd122e511848bdf8ce86c 336 SMART SM00342 251 332 4.6E-17 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0893 301f8bf0672fd122e511848bdf8ce86c 336 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 301 316 1.2E-6 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_A0893 301f8bf0672fd122e511848bdf8ce86c 336 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 316 332 1.2E-6 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_A0893 301f8bf0672fd122e511848bdf8ce86c 336 Pfam PF12833 Helix-turn-helix domain 258 333 1.4E-14 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0893 301f8bf0672fd122e511848bdf8ce86c 336 Gene3D G3DSA:1.10.10.60 244 335 5.3E-19 T 10-10-2018 VF_0008 579ea9110ec98f5e71006c65b2c663d3 250 Gene3D G3DSA:3.40.190.10 93 206 4.0E-30 T 10-10-2018 VF_0008 579ea9110ec98f5e71006c65b2c663d3 250 SUPERFAMILY SSF53850 1 248 1.09E-57 T 10-10-2018 VF_0008 579ea9110ec98f5e71006c65b2c663d3 250 SMART SM00062 26 247 1.6E-74 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_0008 579ea9110ec98f5e71006c65b2c663d3 250 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 245 9.6E-58 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_0008 579ea9110ec98f5e71006c65b2c663d3 250 SMART SM00079 26 246 0.0037 T 10-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 Gene3D G3DSA:3.20.20.120 128 432 2.0E-131 T 10-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 SMART SM01193 4 134 2.1E-91 T 10-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 PIRSF PIRSF001400 1 431 1.3E-190 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 Pfam PF00113 Enolase, C-terminal TIM barrel domain 145 430 5.6E-136 T 10-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 ProSitePatterns PS00164 Enolase signature. 340 353 - T 10-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 SUPERFAMILY SSF51604 144 428 2.55E-125 T 10-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 Pfam PF03952 Enolase, N-terminal domain 4 134 1.2E-57 T 10-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 SUPERFAMILY SSF54826 3 138 1.55E-55 T 10-10-2018 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 Gene3D G3DSA:3.30.390.10 1 127 1.7E-54 T 10-10-2018 IPR029017 Enolase-like, N-terminal VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 PRINTS PR00148 Enolase signature 317 328 3.9E-44 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 PRINTS PR00148 Enolase signature 37 51 3.9E-44 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 PRINTS PR00148 Enolase signature 165 178 3.9E-44 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 PRINTS PR00148 Enolase signature 107 123 3.9E-44 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 PRINTS PR00148 Enolase signature 340 354 3.9E-44 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 PRINTS PR00148 Enolase signature 369 386 3.9E-44 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 429 2.6E-205 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 Hamap MF_00318 Enolase [eno]. 2 417 43.951 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_2075 0b7ad5a96cd9505842aae6f2df0b11e5 432 SMART SM01192 143 431 1.6E-211 T 10-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 39 453 4.4E-163 T 10-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 374 444 3.1E-9 T 10-10-2018 IPR001478 PDZ domain GO:0005515 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 PRINTS PR00834 HtrA/DegQ protease family signature 307 319 8.9E-57 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 PRINTS PR00834 HtrA/DegQ protease family signature 102 114 8.9E-57 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 PRINTS PR00834 HtrA/DegQ protease family signature 199 216 8.9E-57 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 PRINTS PR00834 HtrA/DegQ protease family signature 164 188 8.9E-57 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 PRINTS PR00834 HtrA/DegQ protease family signature 221 238 8.9E-57 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 PRINTS PR00834 HtrA/DegQ protease family signature 123 143 8.9E-57 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 SMART SM00228 374 447 1.5E-8 T 10-10-2018 IPR001478 PDZ domain GO:0005515 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 SMART SM00228 267 349 1.2E-15 T 10-10-2018 IPR001478 PDZ domain GO:0005515 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 Pfam PF13180 PDZ domain 269 358 6.3E-16 T 10-10-2018 IPR001478 PDZ domain GO:0005515 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 Pfam PF13365 Trypsin-like peptidase domain 92 228 4.6E-30 T 10-10-2018 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 SUPERFAMILY SSF50156 233 350 1.46E-23 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 Gene3D G3DSA:2.30.42.10 265 361 4.1E-27 T 10-10-2018 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 Gene3D G3DSA:2.30.42.10 362 455 4.7E-28 T 10-10-2018 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 SUPERFAMILY SSF50156 380 454 2.89E-14 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 Gene3D G3DSA:2.40.10.120 37 261 6.2E-84 T 10-10-2018 VF_2225 6c91ad052eacc5efd44ebd3f00f3b12a 455 SUPERFAMILY SSF50494 10 275 4.22E-64 T 10-10-2018 IPR009003 Peptidase S1, PA clan VF_0469 87a1ff4dd6e2ac5684186167ab4e5294 142 Gene3D G3DSA:2.40.10.330 71 127 9.9E-41 T 10-10-2018 VF_0469 87a1ff4dd6e2ac5684186167ab4e5294 142 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 3 138 2.6E-11 T 10-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VF_0469 87a1ff4dd6e2ac5684186167ab4e5294 142 SUPERFAMILY SSF54534 2 141 2.75E-34 T 10-10-2018 VF_0469 87a1ff4dd6e2ac5684186167ab4e5294 142 Gene3D G3DSA:3.10.50.40 12 139 9.9E-41 T 10-10-2018 VF_A0941 24a8141e62ccc0b1d848605a6002bc4a 326 PIRSF PIRSF000535 6 320 3.1E-93 T 10-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 VF_A0941 24a8141e62ccc0b1d848605a6002bc4a 326 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 9 318 1.1E-101 T 10-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 VF_A0941 24a8141e62ccc0b1d848605a6002bc4a 326 Pfam PF00294 pfkB family carbohydrate kinase 31 304 2.4E-49 T 10-10-2018 IPR011611 Carbohydrate kinase PfkB VF_A0941 24a8141e62ccc0b1d848605a6002bc4a 326 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 43 67 - T 10-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VF_A0941 24a8141e62ccc0b1d848605a6002bc4a 326 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 9 318 4.5E-100 T 10-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 VF_A0941 24a8141e62ccc0b1d848605a6002bc4a 326 Gene3D G3DSA:3.40.1190.20 6 320 1.3E-91 T 10-10-2018 IPR029056 Ribokinase-like VF_A0941 24a8141e62ccc0b1d848605a6002bc4a 326 SUPERFAMILY SSF53613 10 304 4.37E-68 T 10-10-2018 IPR029056 Ribokinase-like VF_A0984 7f13753ce3cd7339a0ad8a3fa01f94d4 485 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 90 292 4.1E-27 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_A0984 7f13753ce3cd7339a0ad8a3fa01f94d4 485 Gene3D G3DSA:1.10.530.10 302 484 2.2E-36 T 10-10-2018 VF_A0984 7f13753ce3cd7339a0ad8a3fa01f94d4 485 Pfam PF01464 Transglycosylase SLT domain 311 413 2.9E-20 T 10-10-2018 IPR008258 Transglycosylase SLT domain 1 VF_A0984 7f13753ce3cd7339a0ad8a3fa01f94d4 485 Gene3D G3DSA:3.40.190.10 71 292 2.1E-52 T 10-10-2018 VF_A0984 7f13753ce3cd7339a0ad8a3fa01f94d4 485 Gene3D G3DSA:3.40.190.10 162 258 2.1E-52 T 10-10-2018 VF_A0984 7f13753ce3cd7339a0ad8a3fa01f94d4 485 SUPERFAMILY SSF53955 308 472 2.71E-34 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_A0984 7f13753ce3cd7339a0ad8a3fa01f94d4 485 SMART SM00062 77 306 2.6E-13 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_A0984 7f13753ce3cd7339a0ad8a3fa01f94d4 485 SUPERFAMILY SSF53850 73 292 2.75E-34 T 10-10-2018 VF_0950 2e8b565a74e175fedb07d773eba8cc1e 173 SUPERFAMILY SSF53098 3 156 6.83E-55 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_0950 2e8b565a74e175fedb07d773eba8cc1e 173 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 155 9.6E-73 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VF_0950 2e8b565a74e175fedb07d773eba8cc1e 173 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 46.617 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VF_0950 2e8b565a74e175fedb07d773eba8cc1e 173 Gene3D G3DSA:3.30.420.10 2 159 6.1E-52 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_0950 2e8b565a74e175fedb07d773eba8cc1e 173 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 10-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 VF_0950 2e8b565a74e175fedb07d773eba8cc1e 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 7.3E-42 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VF_0950 2e8b565a74e175fedb07d773eba8cc1e 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 7.3E-42 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VF_0950 2e8b565a74e175fedb07d773eba8cc1e 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 7.3E-42 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VF_0950 2e8b565a74e175fedb07d773eba8cc1e 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 7.3E-42 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VF_0950 2e8b565a74e175fedb07d773eba8cc1e 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 7.3E-42 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VF_0950 2e8b565a74e175fedb07d773eba8cc1e 173 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 4.7E-61 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VF_A0083 6c3b2096b9b48ff5d66fcf8fb3e26880 194 Pfam PF02613 Nitrate reductase delta subunit 41 149 7.4E-21 T 10-10-2018 IPR020945 DMSO/Nitrate reductase chaperone VF_A0083 6c3b2096b9b48ff5d66fcf8fb3e26880 194 SUPERFAMILY SSF89155 2 193 3.01E-53 T 10-10-2018 IPR036411 TorD-like superfamily VF_A0083 6c3b2096b9b48ff5d66fcf8fb3e26880 194 Gene3D G3DSA:1.10.3480.10 1 194 5.5E-47 T 10-10-2018 VF_A0083 6c3b2096b9b48ff5d66fcf8fb3e26880 194 PIRSF PIRSF004690 1 194 7.8E-44 T 10-10-2018 IPR026269 Tat proofreading chaperone DmsD-type VF_0470 04e39b0fc5f8a88185aea39d1122114b 314 Gene3D G3DSA:3.40.1010.20 6 280 5.3E-112 T 10-10-2018 VF_0470 04e39b0fc5f8a88185aea39d1122114b 314 Pfam PF02401 LytB protein 3 282 1.1E-93 T 10-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 VF_0470 04e39b0fc5f8a88185aea39d1122114b 314 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 284 3.4E-100 T 10-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 VF_0470 04e39b0fc5f8a88185aea39d1122114b 314 Gene3D G3DSA:3.40.50.11270 12 96 5.3E-112 T 10-10-2018 VF_0470 04e39b0fc5f8a88185aea39d1122114b 314 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 286 37.876 T 10-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 VF_0470 04e39b0fc5f8a88185aea39d1122114b 314 Gene3D G3DSA:3.40.1010.20 97 196 5.3E-112 T 10-10-2018 VF_A0735 5247c4fdfdea5012e33bc2d328708813 265 Gene3D G3DSA:2.50.20.10 33 260 4.9E-38 T 10-10-2018 VF_A0735 5247c4fdfdea5012e33bc2d328708813 265 Pfam PF17131 Outer membrane lipoprotein-sorting protein 82 259 1.5E-34 T 10-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein VF_A0735 5247c4fdfdea5012e33bc2d328708813 265 PIRSF PIRSF028205 1 262 7.0E-92 T 10-10-2018 IPR011220 Uncharacterised conserved protein UCP028205 VF_A0736 3a59feee3e84c0debdf925e06dc2e793 422 Pfam PF12704 MacB-like periplasmic core domain 26 251 2.2E-12 T 10-10-2018 IPR025857 MacB-like periplasmic core domain VF_A0736 3a59feee3e84c0debdf925e06dc2e793 422 Pfam PF02687 FtsX-like permease family 315 413 3.0E-9 T 10-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VF_B0015 18eda69db7f748eb3612dd5f42a569ec 215 SMART SM00857 12 166 8.3E-38 T 10-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 VF_B0015 18eda69db7f748eb3612dd5f42a569ec 215 SUPERFAMILY SSF53041 11 166 3.92E-31 T 10-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 VF_B0015 18eda69db7f748eb3612dd5f42a569ec 215 ProSitePatterns PS00397 Site-specific recombinases active site. 15 23 - T 10-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 VF_B0015 18eda69db7f748eb3612dd5f42a569ec 215 ProSitePatterns PS00398 Site-specific recombinases signature 2. 71 83 - T 10-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 VF_B0015 18eda69db7f748eb3612dd5f42a569ec 215 Pfam PF00239 Resolvase, N terminal domain 12 166 3.0E-28 T 10-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 VF_B0015 18eda69db7f748eb3612dd5f42a569ec 215 Gene3D G3DSA:3.40.50.1390 7 174 3.9E-31 T 10-10-2018 VF_A0378 9fb2b0a5380c6d134d0a17f592a1c078 533 ProSitePatterns PS01303 BCCT family of transporters signature. 335 344 - T 10-10-2018 IPR018093 BCCT transporter, conserved site VF_A0378 9fb2b0a5380c6d134d0a17f592a1c078 533 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 32 519 9.9E-172 T 10-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VF_A0378 9fb2b0a5380c6d134d0a17f592a1c078 533 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 74 519 2.6E-135 T 10-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VF_A1055 b4ba1e02bc8e4601558dd5187e1f2701 291 Pfam PF00892 EamA-like transporter family 147 279 6.5E-20 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_A1055 b4ba1e02bc8e4601558dd5187e1f2701 291 Pfam PF00892 EamA-like transporter family 4 134 4.9E-15 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_A1055 b4ba1e02bc8e4601558dd5187e1f2701 291 SUPERFAMILY SSF103481 37 136 6.54E-14 T 10-10-2018 VF_A1055 b4ba1e02bc8e4601558dd5187e1f2701 291 SUPERFAMILY SSF103481 186 279 1.22E-15 T 10-10-2018 VF_2055 9502981400a6405915b819426473d054 461 SUPERFAMILY SSF46626 317 455 2.51E-39 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_2055 9502981400a6405915b819426473d054 461 Pfam PF00034 Cytochrome c 337 451 2.0E-8 T 10-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_2055 9502981400a6405915b819426473d054 461 SMART SM01235 12 153 1.0E-55 T 10-10-2018 IPR025992 Haem-binding domain VF_2055 9502981400a6405915b819426473d054 461 Pfam PF14376 Haem-binding domain 16 151 1.5E-33 T 10-10-2018 IPR025992 Haem-binding domain VF_2055 9502981400a6405915b819426473d054 461 Pfam PF03150 Di-haem cytochrome c peroxidase 181 327 7.2E-48 T 10-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 VF_2055 9502981400a6405915b819426473d054 461 Gene3D G3DSA:1.10.760.10 178 455 4.1E-106 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_2055 9502981400a6405915b819426473d054 461 Gene3D G3DSA:1.10.760.10 181 328 4.1E-106 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_2055 9502981400a6405915b819426473d054 461 SUPERFAMILY SSF46626 166 316 1.05E-43 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_0258 f413669e6d07b9786e9757ee822eb7c8 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 17.034 T 10-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0258 f413669e6d07b9786e9757ee822eb7c8 37 SUPERFAMILY SSF57840 1 37 2.09E-16 T 10-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0258 f413669e6d07b9786e9757ee822eb7c8 37 Pfam PF00444 Ribosomal protein L36 1 37 4.5E-18 T 10-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0258 f413669e6d07b9786e9757ee822eb7c8 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 10-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0258 f413669e6d07b9786e9757ee822eb7c8 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 37 5.0E-9 T 10-10-2018 VF_0258 f413669e6d07b9786e9757ee822eb7c8 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 1.3E-22 T 10-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0912 47f4481a79b12d0619372ae08e94349f 291 Gene3D G3DSA:2.70.98.10 1 291 2.0E-90 T 10-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 VF_0912 47f4481a79b12d0619372ae08e94349f 291 Pfam PF01263 Aldose 1-epimerase 26 289 1.2E-46 T 10-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 VF_0912 47f4481a79b12d0619372ae08e94349f 291 PIRSF PIRSF016020 7 291 3.6E-67 T 10-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 VF_0912 47f4481a79b12d0619372ae08e94349f 291 SUPERFAMILY SSF74650 5 289 3.89E-74 T 10-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VF_2352 94c273e72306715369948c864f0aab62 170 Pfam PF04186 FxsA cytoplasmic membrane protein 1 106 3.9E-35 T 10-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 VF_1975 e0a901e2469f828fad47a318ddc817c6 202 Gene3D G3DSA:3.40.30.10 1 197 6.8E-71 T 10-10-2018 VF_1975 e0a901e2469f828fad47a318ddc817c6 202 SUPERFAMILY SSF52833 1 194 2.2E-65 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1975 e0a901e2469f828fad47a318ddc817c6 202 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 194 5.3E-8 T 10-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VF_1975 e0a901e2469f828fad47a318ddc817c6 202 PIRSF PIRSF000239 1 201 9.7E-59 T 10-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VF_1975 e0a901e2469f828fad47a318ddc817c6 202 Pfam PF00578 AhpC/TSA family 4 139 1.8E-33 T 10-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VF_1685 7b869fd0cbd29043c6972633aaaf5916 200 SMART SM00493 81 166 2.7E-16 T 10-10-2018 IPR006171 TOPRIM domain VF_1685 7b869fd0cbd29043c6972633aaaf5916 200 Pfam PF02132 RecR protein 41 77 1.1E-15 T 10-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger VF_1685 7b869fd0cbd29043c6972633aaaf5916 200 Gene3D G3DSA:1.10.8.420 1 53 2.8E-19 T 10-10-2018 VF_1685 7b869fd0cbd29043c6972633aaaf5916 200 Gene3D G3DSA:3.40.1360.10 78 199 7.3E-38 T 10-10-2018 VF_1685 7b869fd0cbd29043c6972633aaaf5916 200 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 10-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 VF_1685 7b869fd0cbd29043c6972633aaaf5916 200 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 101.501 T 10-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 VF_1685 7b869fd0cbd29043c6972633aaaf5916 200 Pfam PF13662 Toprim domain 82 172 1.4E-22 T 10-10-2018 IPR006171 TOPRIM domain VF_1685 7b869fd0cbd29043c6972633aaaf5916 200 TIGRFAM TIGR00615 recR: recombination protein RecR 4 197 7.7E-77 T 10-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 VF_1685 7b869fd0cbd29043c6972633aaaf5916 200 SUPERFAMILY SSF111304 3 199 1.96E-71 T 10-10-2018 IPR023627 Recombination protein RecR VF_0724 a5b78b96f963a8b962a7e8153e40c8e5 104 Gene3D G3DSA:3.30.300.90 1 89 1.2E-35 T 10-10-2018 VF_0724 a5b78b96f963a8b962a7e8153e40c8e5 104 PIRSF PIRSF003113 1 100 1.3E-36 T 10-10-2018 IPR002634 BolA protein VF_0724 a5b78b96f963a8b962a7e8153e40c8e5 104 SUPERFAMILY SSF82657 1 87 4.84E-32 T 10-10-2018 IPR036065 BolA-like superfamily VF_0724 a5b78b96f963a8b962a7e8153e40c8e5 104 Pfam PF01722 BolA-like protein 10 83 6.4E-31 T 10-10-2018 IPR002634 BolA protein VF_2591 3ae9da7393e273d8d150b93cf49bfc30 165 SUPERFAMILY SSF142433 4 162 1.83E-51 T 10-10-2018 IPR036653 CinA-like, C-terminal VF_2591 3ae9da7393e273d8d150b93cf49bfc30 165 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 14 161 2.1E-45 T 10-10-2018 IPR008136 CinA, C-terminal VF_2591 3ae9da7393e273d8d150b93cf49bfc30 165 Gene3D G3DSA:3.90.950.20 1 161 1.3E-52 T 10-10-2018 IPR036653 CinA-like, C-terminal VF_2591 3ae9da7393e273d8d150b93cf49bfc30 165 Pfam PF02464 Competence-damaged protein 8 159 2.6E-52 T 10-10-2018 IPR008136 CinA, C-terminal VF_0991 0bf32aa795b2e43041b52f2fb5884dab 223 SMART SM00331 11 221 8.1E-8 T 10-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VF_0991 0bf32aa795b2e43041b52f2fb5884dab 223 Pfam PF13672 Protein phosphatase 2C 17 183 1.0E-12 T 10-10-2018 VF_0991 0bf32aa795b2e43041b52f2fb5884dab 223 SMART SM00332 2 219 2.4E-19 T 10-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VF_0991 0bf32aa795b2e43041b52f2fb5884dab 223 Gene3D G3DSA:3.60.40.10 1 222 2.7E-44 T 10-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VF_0991 0bf32aa795b2e43041b52f2fb5884dab 223 SUPERFAMILY SSF81606 5 220 3.79E-46 T 10-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VF_1744 de751f98ef62e538ff079308e27b07c0 56 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 1.1E-18 T 10-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1744 de751f98ef62e538ff079308e27b07c0 56 Pfam PF01783 Ribosomal L32p protein family 2 56 5.4E-19 T 10-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1744 de751f98ef62e538ff079308e27b07c0 56 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.012 T 10-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1744 de751f98ef62e538ff079308e27b07c0 56 SUPERFAMILY SSF57829 2 55 3.97E-17 T 10-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 VF_A0311 861c20befd8e6ec523c0f898671eebac 221 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 219 4.6E-95 T 10-10-2018 IPR014319 Phage shock protein, PspA VF_A0311 861c20befd8e6ec523c0f898671eebac 221 Pfam PF04012 PspA/IM30 family 2 217 1.5E-49 T 10-10-2018 IPR007157 PspA/IM30 VF_1557 14ab0fe55495dad40c830832861f55fd 780 Gene3D G3DSA:3.40.50.300 1 167 3.6E-40 T 10-10-2018 VF_1557 14ab0fe55495dad40c830832861f55fd 780 Gene3D G3DSA:1.20.120.1080 360 452 2.4E-8 T 10-10-2018 VF_1557 14ab0fe55495dad40c830832861f55fd 780 SMART SM00487 1 174 6.7E-12 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_1557 14ab0fe55495dad40c830832861f55fd 780 Gene3D G3DSA:3.40.50.300 168 333 7.7E-40 T 10-10-2018 VF_1557 14ab0fe55495dad40c830832861f55fd 780 Pfam PF00270 DEAD/DEAH box helicase 16 150 1.6E-7 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_1557 14ab0fe55495dad40c830832861f55fd 780 SMART SM00490 220 317 4.9E-11 T 10-10-2018 IPR001650 Helicase, C-terminal VF_1557 14ab0fe55495dad40c830832861f55fd 780 Pfam PF04408 Helicase associated domain (HA2) 375 456 1.9E-9 T 10-10-2018 IPR007502 Helicase-associated domain GO:0004386 VF_1557 14ab0fe55495dad40c830832861f55fd 780 Pfam PF00271 Helicase conserved C-terminal domain 195 316 1.8E-13 T 10-10-2018 IPR001650 Helicase, C-terminal VF_1557 14ab0fe55495dad40c830832861f55fd 780 SMART SM00847 374 463 2.9E-8 T 10-10-2018 IPR007502 Helicase-associated domain GO:0004386 VF_1557 14ab0fe55495dad40c830832861f55fd 780 SUPERFAMILY SSF52540 17 326 2.23E-43 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0132 4de2fc26a9184261e5031b47a90ed33d 162 Gene3D G3DSA:3.40.50.620 1 161 2.3E-56 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0132 4de2fc26a9184261e5031b47a90ed33d 162 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 159 35.972 T 10-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VF_0132 4de2fc26a9184261e5031b47a90ed33d 162 Pfam PF01467 Cytidylyltransferase-like 6 134 6.2E-21 T 10-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VF_0132 4de2fc26a9184261e5031b47a90ed33d 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 2.0E-51 T 10-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VF_0132 4de2fc26a9184261e5031b47a90ed33d 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 2.0E-51 T 10-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VF_0132 4de2fc26a9184261e5031b47a90ed33d 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 2.0E-51 T 10-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VF_0132 4de2fc26a9184261e5031b47a90ed33d 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 2.0E-51 T 10-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VF_0132 4de2fc26a9184261e5031b47a90ed33d 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 2.0E-51 T 10-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VF_0132 4de2fc26a9184261e5031b47a90ed33d 162 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 6 64 4.3E-18 T 10-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VF_0132 4de2fc26a9184261e5031b47a90ed33d 162 SUPERFAMILY SSF52374 4 157 6.44E-45 T 10-10-2018 VF_0132 4de2fc26a9184261e5031b47a90ed33d 162 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 157 3.2E-61 T 10-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VF_0132 4de2fc26a9184261e5031b47a90ed33d 162 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 12 67 0.003 T 10-10-2018 VF_A0348 36bc208f2be7bb132f41860d9dd14ae1 331 SUPERFAMILY SSF53822 80 323 4.12E-45 T 10-10-2018 IPR028082 Periplasmic binding protein-like I VF_A0348 36bc208f2be7bb132f41860d9dd14ae1 331 Gene3D G3DSA:1.10.260.40 1 47 1.1E-15 T 10-10-2018 VF_A0348 36bc208f2be7bb132f41860d9dd14ae1 331 SUPERFAMILY SSF47413 1 51 6.28E-11 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_A0348 36bc208f2be7bb132f41860d9dd14ae1 331 SMART SM00354 1 64 1.4E-11 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_A0348 36bc208f2be7bb132f41860d9dd14ae1 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 10-10-2018 VF_A0348 36bc208f2be7bb132f41860d9dd14ae1 331 Pfam PF13377 Periplasmic binding protein-like domain 171 329 2.2E-34 T 10-10-2018 VF_A0348 36bc208f2be7bb132f41860d9dd14ae1 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 49 3.7E-15 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_A0348 36bc208f2be7bb132f41860d9dd14ae1 331 Gene3D G3DSA:3.40.50.2300 83 321 7.1E-52 T 10-10-2018 VF_A0348 36bc208f2be7bb132f41860d9dd14ae1 331 Gene3D G3DSA:3.40.50.2300 162 323 7.1E-52 T 10-10-2018 VF_A0931 5fb61684b9a5f0c6c3f3e57a88ffacd0 261 Gene3D G3DSA:1.10.10.60 154 260 2.2E-22 T 10-10-2018 VF_A0931 5fb61684b9a5f0c6c3f3e57a88ffacd0 261 Pfam PF12833 Helix-turn-helix domain 182 257 2.2E-15 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0931 5fb61684b9a5f0c6c3f3e57a88ffacd0 261 SMART SM00342 174 256 6.6E-20 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0931 5fb61684b9a5f0c6c3f3e57a88ffacd0 261 SUPERFAMILY SSF46689 209 258 3.36E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_0468 ad3abeafd81b36441a6c85cad6506a39 171 ProSitePatterns PS00855 Signal peptidases II signature. 112 124 - T 10-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VF_0468 ad3abeafd81b36441a6c85cad6506a39 171 TIGRFAM TIGR00077 lspA: signal peptidase II 13 170 3.2E-51 T 10-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VF_0468 ad3abeafd81b36441a6c85cad6506a39 171 Pfam PF01252 Signal peptidase (SPase) II 22 164 7.0E-38 T 10-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VF_0468 ad3abeafd81b36441a6c85cad6506a39 171 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 13 170 16.871 T 10-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VF_0468 ad3abeafd81b36441a6c85cad6506a39 171 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 61 69 8.8E-19 T 10-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VF_0468 ad3abeafd81b36441a6c85cad6506a39 171 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 145 161 8.8E-19 T 10-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VF_0468 ad3abeafd81b36441a6c85cad6506a39 171 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 109 124 8.8E-19 T 10-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VF_0664 cc4a5c9cb56e1f52f463f003cb01bea6 292 SUPERFAMILY SSF53697 110 287 1.7E-40 T 10-10-2018 VF_0664 cc4a5c9cb56e1f52f463f003cb01bea6 292 Gene3D G3DSA:3.40.50.10490 107 288 1.3E-45 T 10-10-2018 VF_0664 cc4a5c9cb56e1f52f463f003cb01bea6 292 Pfam PF01380 SIS domain 139 238 2.1E-18 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VF_0664 cc4a5c9cb56e1f52f463f003cb01bea6 292 Gene3D G3DSA:1.10.10.10 7 89 2.2E-25 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0664 cc4a5c9cb56e1f52f463f003cb01bea6 292 Pfam PF01418 Helix-turn-helix domain, rpiR family 12 86 1.8E-22 T 10-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 VF_0664 cc4a5c9cb56e1f52f463f003cb01bea6 292 SUPERFAMILY SSF46689 11 85 1.79E-20 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1637 7e17f7faf8eeb6cd943a4973c4c9c0ff 185 SUPERFAMILY SSF54523 7 143 1.49E-15 T 10-10-2018 VF_1637 7e17f7faf8eeb6cd943a4973c4c9c0ff 185 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 26 2.5E-9 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_1637 7e17f7faf8eeb6cd943a4973c4c9c0ff 185 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_1637 7e17f7faf8eeb6cd943a4973c4c9c0ff 185 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 3.3E-10 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_1637 7e17f7faf8eeb6cd943a4973c4c9c0ff 185 Gene3D G3DSA:3.30.700.10 7 185 3.1E-13 T 10-10-2018 VF_0034 0ecabe4e181f5efdd2bf5bc6a0351dde 277 Gene3D G3DSA:3.40.50.720 9 263 7.7E-84 T 10-10-2018 VF_0034 0ecabe4e181f5efdd2bf5bc6a0351dde 277 SUPERFAMILY SSF69572 7 259 4.97E-78 T 10-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 VF_0034 0ecabe4e181f5efdd2bf5bc6a0351dde 277 Pfam PF00899 ThiF family 17 253 1.3E-60 T 10-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 VF_A0451 a9c260a2295a69e60b6aa68174425977 564 Pfam PF17392 Urocanase C-terminal domain 356 550 5.8E-93 T 10-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VF_A0451 a9c260a2295a69e60b6aa68174425977 564 SUPERFAMILY SSF111326 10 559 3.66E-258 T 10-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VF_A0451 a9c260a2295a69e60b6aa68174425977 564 Pfam PF01175 Urocanase Rossmann-like domain 145 353 5.8E-84 T 10-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VF_A0451 a9c260a2295a69e60b6aa68174425977 564 Gene3D G3DSA:3.40.1770.10 23 546 4.7E-257 T 10-10-2018 VF_A0451 a9c260a2295a69e60b6aa68174425977 564 Pfam PF17391 Urocanase N-terminal domain 18 142 2.7E-59 T 10-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VF_A0451 a9c260a2295a69e60b6aa68174425977 564 TIGRFAM TIGR01228 hutU: urocanate hydratase 15 558 1.2E-291 T 10-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VF_A0451 a9c260a2295a69e60b6aa68174425977 564 PIRSF PIRSF001423 1 564 3.3E-292 T 10-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VF_A0451 a9c260a2295a69e60b6aa68174425977 564 Gene3D G3DSA:3.40.50.10730 146 353 4.7E-257 T 10-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VF_A0451 a9c260a2295a69e60b6aa68174425977 564 Hamap MF_00577 Urocanate hydratase [hutU]. 4 560 49.272 T 10-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VF_A0451 a9c260a2295a69e60b6aa68174425977 564 ProSitePatterns PS01233 Urocanase signature. 446 461 - T 10-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VF_1457 02213cf725bf328dd620b939605b9924 494 SUPERFAMILY SSF55486 1 493 2.93E-113 T 10-10-2018 VF_1457 02213cf725bf328dd620b939605b9924 494 Gene3D G3DSA:1.10.1370.30 1 494 1.7E-194 T 10-10-2018 VF_1457 02213cf725bf328dd620b939605b9924 494 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 400 421 9.1E-46 T 10-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VF_1457 02213cf725bf328dd620b939605b9924 494 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 241 260 9.1E-46 T 10-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VF_1457 02213cf725bf328dd620b939605b9924 494 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 145 165 9.1E-46 T 10-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VF_1457 02213cf725bf328dd620b939605b9924 494 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 261 280 9.1E-46 T 10-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VF_1457 02213cf725bf328dd620b939605b9924 494 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 288 304 9.1E-46 T 10-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VF_1457 02213cf725bf328dd620b939605b9924 494 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 444 462 9.1E-46 T 10-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VF_1457 02213cf725bf328dd620b939605b9924 494 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 330 349 9.1E-46 T 10-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VF_1457 02213cf725bf328dd620b939605b9924 494 PIRSF PIRSF006615 1 494 8.3E-192 T 10-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VF_1457 02213cf725bf328dd620b939605b9924 494 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 12 492 6.8E-95 T 10-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VF_B0047 56f24360dc95ab5556928b6f30c336ea 182 Pfam PF00691 OmpA family 95 170 8.2E-5 T 10-10-2018 IPR006665 OmpA-like domain VF_B0047 56f24360dc95ab5556928b6f30c336ea 182 SUPERFAMILY SSF103088 80 178 2.62E-14 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_B0047 56f24360dc95ab5556928b6f30c336ea 182 Gene3D G3DSA:3.30.1330.60 77 181 2.3E-11 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_1514 2221cd85cf2998a7cfb084fc86e63305 176 Gene3D G3DSA:3.30.420.10 1 176 2.0E-38 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_1514 2221cd85cf2998a7cfb084fc86e63305 176 SMART SM00479 5 176 7.5E-6 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_1514 2221cd85cf2998a7cfb084fc86e63305 176 SUPERFAMILY SSF53098 3 175 3.37E-30 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_1514 2221cd85cf2998a7cfb084fc86e63305 176 Pfam PF00929 Exonuclease 7 171 7.3E-13 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_2065 5ceb4d2298a854bbc3415c3f8f5c5fae 404 Pfam PF07670 Nucleoside recognition 90 185 1.1E-6 T 10-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VF_2065 5ceb4d2298a854bbc3415c3f8f5c5fae 404 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 4 399 1.4E-138 T 10-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 VF_2065 5ceb4d2298a854bbc3415c3f8f5c5fae 404 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 192 399 1.0E-70 T 10-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 VF_2065 5ceb4d2298a854bbc3415c3f8f5c5fae 404 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 3.8E-25 T 10-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 VF_1900 8f488da428f012b81f074175861eaea9 149 Pfam PF11143 Protein of unknown function (DUF2919) 3 147 6.7E-51 T 10-10-2018 IPR021318 Protein of unknown function DUF2919 VF_2551 07f50f7666a5ae5f7cd6d0fd033d6cf5 472 Pfam PF13746 4Fe-4S dicluster domain 222 326 1.8E-40 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_2551 07f50f7666a5ae5f7cd6d0fd033d6cf5 472 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 356 469 4.4E-31 T 10-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain VF_2551 07f50f7666a5ae5f7cd6d0fd033d6cf5 472 Pfam PF12801 4Fe-4S binding domain 97 136 2.2E-8 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_2551 07f50f7666a5ae5f7cd6d0fd033d6cf5 472 Gene3D G3DSA:2.60.40.10 357 472 5.9E-41 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_2551 07f50f7666a5ae5f7cd6d0fd033d6cf5 472 SUPERFAMILY SSF54862 107 355 6.38E-31 T 10-10-2018 VF_2551 07f50f7666a5ae5f7cd6d0fd033d6cf5 472 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 43 469 5.5E-171 T 10-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 VF_2551 07f50f7666a5ae5f7cd6d0fd033d6cf5 472 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 274 285 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_1642 f5c6b657a0f04ba334113f37ee1477a6 667 Gene3D G3DSA:3.40.50.720 375 661 6.1E-104 T 10-10-2018 VF_1642 f5c6b657a0f04ba334113f37ee1477a6 667 Gene3D G3DSA:3.50.50.60 469 620 6.1E-104 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_1642 f5c6b657a0f04ba334113f37ee1477a6 667 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 376 634 3.8E-23 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VF_1642 f5c6b657a0f04ba334113f37ee1477a6 667 SUPERFAMILY SSF51395 1 362 1.69E-109 T 10-10-2018 VF_1642 f5c6b657a0f04ba334113f37ee1477a6 667 SUPERFAMILY SSF51905 335 648 4.66E-38 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_1642 f5c6b657a0f04ba334113f37ee1477a6 667 Gene3D G3DSA:3.20.20.70 2 368 3.7E-121 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1642 f5c6b657a0f04ba334113f37ee1477a6 667 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 497 515 3.2E-7 T 10-10-2018 VF_1642 f5c6b657a0f04ba334113f37ee1477a6 667 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 377 396 3.2E-7 T 10-10-2018 VF_1642 f5c6b657a0f04ba334113f37ee1477a6 667 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 328 4.4E-83 T 10-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 VF_A0511 811e1126307432041f555d852f321fbc 314 TIGRFAM TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 6 275 1.1E-105 T 10-10-2018 IPR019991 GTP-binding protein, ribosome biogenesis VF_A0511 811e1126307432041f555d852f321fbc 314 PIRSF PIRSF006230 2 280 5.3E-104 T 10-10-2018 IPR016478 GTPase, MTG1 VF_A0511 811e1126307432041f555d852f321fbc 314 PIRSF PIRSF006230 284 313 1700.0 T 10-10-2018 IPR016478 GTPase, MTG1 VF_A0511 811e1126307432041f555d852f321fbc 314 Gene3D G3DSA:1.10.1580.10 177 268 9.2E-29 T 10-10-2018 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily VF_A0511 811e1126307432041f555d852f321fbc 314 Gene3D G3DSA:3.40.50.300 6 174 1.4E-42 T 10-10-2018 VF_A0511 811e1126307432041f555d852f321fbc 314 Pfam PF01926 50S ribosome-binding GTPase 120 184 6.0E-14 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_A0511 811e1126307432041f555d852f321fbc 314 SUPERFAMILY SSF52540 12 248 1.21E-40 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_B0020 08c356fdf6d272c0f08a1309bbe39fdc 59 Pfam PF05509 TraY domain 10 57 2.8E-19 T 10-10-2018 IPR008876 Relaxosome protein TraY GO:0000746|GO:0003677 VF_A0680 7f239319e23775bf349c800f3d665b83 177 Pfam PF14316 Domain of unknown function (DUF4381) 19 160 3.2E-31 T 10-10-2018 IPR025489 Protein of unknown function (DUF4381 VF_0063 c4dc6687abc0be8c74002fbbf8ae9381 394 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 2 386 2.5E-97 T 10-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 VF_0063 c4dc6687abc0be8c74002fbbf8ae9381 394 Gene3D G3DSA:1.25.40.10 76 393 1.7E-10 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0063 c4dc6687abc0be8c74002fbbf8ae9381 394 SUPERFAMILY SSF48452 84 204 4.22E-7 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0063 c4dc6687abc0be8c74002fbbf8ae9381 394 Pfam PF07219 HemY protein N-terminus 26 131 4.8E-29 T 10-10-2018 IPR010817 HemY, N-terminal VF_0063 c4dc6687abc0be8c74002fbbf8ae9381 394 SUPERFAMILY SSF48452 316 389 3.57E-8 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0065 6b53fc06a22344ae2f5f2956ea44d4c1 248 Hamap MF_01561 Probable phosphatase YcdX [ycdX]. 2 245 53.953 T 10-10-2018 IPR023710 Probable phosphatase YcdX GO:0008270 VF_A0065 6b53fc06a22344ae2f5f2956ea44d4c1 248 SUPERFAMILY SSF89550 5 244 1.44E-60 T 10-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 VF_A0065 6b53fc06a22344ae2f5f2956ea44d4c1 248 Gene3D G3DSA:3.20.20.140 3 247 8.5E-65 T 10-10-2018 VF_A0065 6b53fc06a22344ae2f5f2956ea44d4c1 248 SMART SM00481 5 79 1.9E-6 T 10-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal VF_2190 7b9c48897da846cc6d59bec06308be4b 248 SUPERFAMILY SSF160950 6 248 3.53E-88 T 10-10-2018 IPR036268 ZapD domain superfamily VF_2190 7b9c48897da846cc6d59bec06308be4b 248 Gene3D G3DSA:1.10.3900.10 15 181 3.5E-81 T 10-10-2018 VF_2190 7b9c48897da846cc6d59bec06308be4b 248 Pfam PF07072 Cell division protein 21 227 3.4E-72 T 10-10-2018 IPR009777 Cell division protein ZapD VF_2190 7b9c48897da846cc6d59bec06308be4b 248 Hamap MF_01092 Cell division protein ZapD [zapD]. 6 248 32.732 T 10-10-2018 IPR009777 Cell division protein ZapD VF_2190 7b9c48897da846cc6d59bec06308be4b 248 Gene3D G3DSA:2.60.440.10 9 248 3.5E-81 T 10-10-2018 IPR027462 Z ring-associated protein D, C-terminal VF_1693 77cde6a9a92a0ff78b6ea1357c833cc1 185 Gene3D G3DSA:3.30.70.1070 106 178 7.5E-8 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VF_1693 77cde6a9a92a0ff78b6ea1357c833cc1 185 SUPERFAMILY SSF110997 104 181 1.44E-16 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VF_1693 77cde6a9a92a0ff78b6ea1357c833cc1 185 Pfam PF05036 Sporulation related domain 104 178 3.0E-13 T 10-10-2018 IPR007730 Sporulation-like domain GO:0042834 VF_2157 e00c9e0f05f6ac67649706dd4d0cf397 376 PIRSF PIRSF006078 1 376 8.7E-142 T 10-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 VF_2157 e00c9e0f05f6ac67649706dd4d0cf397 376 Gene3D G3DSA:3.90.1510.10 42 276 9.3E-142 T 10-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 VF_2157 e00c9e0f05f6ac67649706dd4d0cf397 376 SUPERFAMILY SSF110738 1 375 1.44E-144 T 10-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 VF_2157 e00c9e0f05f6ac67649706dd4d0cf397 376 Gene3D G3DSA:3.40.50.10350 2 359 9.3E-142 T 10-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold VF_2157 e00c9e0f05f6ac67649706dd4d0cf397 376 Pfam PF02595 Glycerate kinase family 3 372 1.3E-149 T 10-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 VF_2157 e00c9e0f05f6ac67649706dd4d0cf397 376 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 2.6E-164 T 10-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 VF_A1115 f63540704cd2f21a542d3d3d3624adbd 294 Pfam PF03466 LysR substrate binding domain 88 253 3.5E-15 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A1115 f63540704cd2f21a542d3d3d3624adbd 294 Gene3D G3DSA:1.10.10.10 1 88 2.8E-17 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1115 f63540704cd2f21a542d3d3d3624adbd 294 SUPERFAMILY SSF53850 88 289 9.05E-20 T 10-10-2018 VF_A1115 f63540704cd2f21a542d3d3d3624adbd 294 Gene3D G3DSA:3.40.190.290 92 272 1.4E-32 T 10-10-2018 VF_A1115 f63540704cd2f21a542d3d3d3624adbd 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 4.8E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1115 f63540704cd2f21a542d3d3d3624adbd 294 SUPERFAMILY SSF46785 1 86 3.22E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0527 1bc2c9c417ad6d1edf5d5d87a8d64215 781 Pfam PF07238 PilZ domain 146 231 1.7E-6 T 10-10-2018 IPR009875 PilZ domain GO:0035438 VF_0527 1bc2c9c417ad6d1edf5d5d87a8d64215 781 Pfam PF07238 PilZ domain 470 557 8.6E-9 T 10-10-2018 IPR009875 PilZ domain GO:0035438 VF_0527 1bc2c9c417ad6d1edf5d5d87a8d64215 781 Gene3D G3DSA:2.40.10.220 466 589 2.6E-6 T 10-10-2018 VF_A0694 397ec707fe3e3e2560e0831c0556b179 236 SUPERFAMILY SSF51161 29 200 9.29E-37 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_A0694 397ec707fe3e3e2560e0831c0556b179 236 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 10-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VF_A0694 397ec707fe3e3e2560e0831c0556b179 236 Gene3D G3DSA:2.160.10.10 27 223 3.4E-53 T 10-10-2018 VF_A0694 397ec707fe3e3e2560e0831c0556b179 236 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 126 160 2.7E-9 T 10-10-2018 IPR001451 Hexapeptide repeat VF_1585 b309e5767e9381c6f8bb3ea6e4b40e10 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 218 4.1E-18 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_1585 b309e5767e9381c6f8bb3ea6e4b40e10 225 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 112 6.0E-24 T 10-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VF_1585 b309e5767e9381c6f8bb3ea6e4b40e10 225 SUPERFAMILY SSF161098 11 203 1.31E-41 T 10-10-2018 IPR035906 MetI-like superfamily VF_1585 b309e5767e9381c6f8bb3ea6e4b40e10 225 Gene3D G3DSA:1.10.3720.10 1 219 1.3E-50 T 10-10-2018 IPR035906 MetI-like superfamily VF_1605 04ad5f44cbe69d50105d57c00f2d71a9 474 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 45 64 9.7E-13 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1605 04ad5f44cbe69d50105d57c00f2d71a9 474 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 16 37 9.7E-13 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1605 04ad5f44cbe69d50105d57c00f2d71a9 474 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 89 115 9.7E-13 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1605 04ad5f44cbe69d50105d57c00f2d71a9 474 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 313 333 9.7E-13 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1605 04ad5f44cbe69d50105d57c00f2d71a9 474 SUPERFAMILY SSF161070 8 449 6.8E-132 T 10-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 VF_1605 04ad5f44cbe69d50105d57c00f2d71a9 474 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 32 46 - T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1605 04ad5f44cbe69d50105d57c00f2d71a9 474 Pfam PF00209 Sodium:neurotransmitter symporter family 8 119 3.9E-25 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1605 04ad5f44cbe69d50105d57c00f2d71a9 474 Pfam PF00209 Sodium:neurotransmitter symporter family 148 445 1.6E-32 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_A0779 792ec1ecf76898d56c7594c891d0be12 450 Pfam PF01618 MotA/TolQ/ExbB proton channel family 309 426 2.9E-30 T 10-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VF_A0779 792ec1ecf76898d56c7594c891d0be12 450 PIRSF PIRSF037714 1 449 2.9E-146 T 10-10-2018 IPR017270 Putative MotA/TolQ/ExbB family protein VF_0285 5a0cf2492b2ee62d993306dedc187a29 271 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 269 3.0E-118 T 10-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 VF_0285 5a0cf2492b2ee62d993306dedc187a29 271 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 271 47.57 T 10-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 VF_0285 5a0cf2492b2ee62d993306dedc187a29 271 Pfam PF00149 Calcineurin-like phosphoesterase 3 186 3.3E-14 T 10-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VF_0285 5a0cf2492b2ee62d993306dedc187a29 271 PIRSF PIRSF000903 1 271 7.4E-119 T 10-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 VF_0285 5a0cf2492b2ee62d993306dedc187a29 271 Gene3D G3DSA:3.60.21.10 1 271 7.1E-73 T 10-10-2018 IPR029052 Metallo-dependent phosphatase-like VF_0285 5a0cf2492b2ee62d993306dedc187a29 271 SUPERFAMILY SSF56300 1 248 7.6E-54 T 10-10-2018 VF_A0268 a84ece59bbe87f712b431948d6ee2685 302 Pfam PF05661 Protein of unknown function (DUF808) 5 291 8.5E-117 T 10-10-2018 IPR008526 Inner membrane protein YedI VF_A0268 a84ece59bbe87f712b431948d6ee2685 302 PIRSF PIRSF016660 1 302 6.7E-122 T 10-10-2018 IPR008526 Inner membrane protein YedI VF_1929 cea1bf963b293c565383c2cdcac63712 213 SUPERFAMILY SSF53328 3 200 1.57E-65 T 10-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VF_1929 cea1bf963b293c565383c2cdcac63712 213 Pfam PF00551 Formyl transferase 3 182 3.0E-61 T 10-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VF_1929 cea1bf963b293c565383c2cdcac63712 213 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 3 193 1.4E-76 T 10-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 VF_1929 cea1bf963b293c565383c2cdcac63712 213 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 4 189 30.558 T 10-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 VF_1929 cea1bf963b293c565383c2cdcac63712 213 Gene3D G3DSA:3.40.50.170 3 212 4.1E-81 T 10-10-2018 VF_A0425 4f5f6347843312a8b379beb1a98088fd 328 SUPERFAMILY SSF52540 52 169 5.04E-11 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0425 4f5f6347843312a8b379beb1a98088fd 328 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 328 39.531 T 10-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 VF_A0425 4f5f6347843312a8b379beb1a98088fd 328 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 18 322 5.2E-112 T 10-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 VF_A0425 4f5f6347843312a8b379beb1a98088fd 328 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 23 325 6.5E-96 T 10-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 VF_1160 f83c23e315bd7fb1d8fae10c61be8f4f 120 SUPERFAMILY SSF55620 2 119 6.12E-40 T 10-10-2018 VF_1160 f83c23e315bd7fb1d8fae10c61be8f4f 120 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 4 96 5.7E-32 T 10-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 VF_1160 f83c23e315bd7fb1d8fae10c61be8f4f 120 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 5 120 2.7E-34 T 10-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 VF_1160 f83c23e315bd7fb1d8fae10c61be8f4f 120 PIRSF PIRSF006113 1 120 3.7E-52 T 10-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 VF_1160 f83c23e315bd7fb1d8fae10c61be8f4f 120 Gene3D G3DSA:3.30.479.10 1 120 1.6E-48 T 10-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 VF_0596 bdb0d0741e2aed43a016605a7d1a293b 520 Pfam PF00990 Diguanylate cyclase, GGDEF domain 362 514 3.2E-36 T 10-10-2018 IPR000160 GGDEF domain VF_0596 bdb0d0741e2aed43a016605a7d1a293b 520 SUPERFAMILY SSF55073 365 514 7.14E-35 T 10-10-2018 IPR029787 Nucleotide cyclase VF_0596 bdb0d0741e2aed43a016605a7d1a293b 520 Gene3D G3DSA:3.30.70.270 355 519 3.2E-42 T 10-10-2018 VF_0596 bdb0d0741e2aed43a016605a7d1a293b 520 SMART SM00267 350 520 3.7E-40 T 10-10-2018 IPR000160 GGDEF domain VF_0596 bdb0d0741e2aed43a016605a7d1a293b 520 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 359 516 4.8E-36 T 10-10-2018 IPR000160 GGDEF domain VF_1358 bf678d8e0634cb5342efb5df2cd735e6 340 Gene3D G3DSA:1.20.950.20 120 338 1.8E-64 T 10-10-2018 VF_1358 bf678d8e0634cb5342efb5df2cd735e6 340 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 124 327 3.1E-80 T 10-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 VF_1358 bf678d8e0634cb5342efb5df2cd735e6 340 SUPERFAMILY SSF81342 121 328 2.9E-43 T 10-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 VF_1358 bf678d8e0634cb5342efb5df2cd735e6 340 Pfam PF01292 Prokaryotic cytochrome b561 127 308 4.3E-25 T 10-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 VF_1459 6506b4bd4040fd96fd1a8742c16a26a6 125 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 1 123 1.2E-35 T 10-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 VF_1459 6506b4bd4040fd96fd1a8742c16a26a6 125 Gene3D G3DSA:3.30.1330.40 1 125 5.3E-42 T 10-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VF_1459 6506b4bd4040fd96fd1a8742c16a26a6 125 Pfam PF01042 Endoribonuclease L-PSP 7 123 3.2E-35 T 10-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 VF_1459 6506b4bd4040fd96fd1a8742c16a26a6 125 SUPERFAMILY SSF55298 2 124 1.13E-38 T 10-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VF_1596 db874ffd8bb1f38ff6a1934b22e3ce9a 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 1.1E-40 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_1596 db874ffd8bb1f38ff6a1934b22e3ce9a 306 SUPERFAMILY SSF161098 92 291 1.42E-21 T 10-10-2018 IPR035906 MetI-like superfamily VF_1596 db874ffd8bb1f38ff6a1934b22e3ce9a 306 Gene3D G3DSA:1.10.3720.10 85 300 3.0E-23 T 10-10-2018 IPR035906 MetI-like superfamily VF_1799 8ecc3571e9102cbc86e7d8841aa2e77f 313 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 4 310 51.767 T 10-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 VF_1799 8ecc3571e9102cbc86e7d8841aa2e77f 313 PIRSF PIRSF026649 9 312 1.4E-88 T 10-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VF_1799 8ecc3571e9102cbc86e7d8841aa2e77f 313 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 10 312 9.1E-123 T 10-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 VF_1799 8ecc3571e9102cbc86e7d8841aa2e77f 313 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 12 304 3.4E-77 T 10-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VF_A0594 cd6efff01252fdbaa8733819c9ed3bf3 98 Gene3D G3DSA:3.30.70.860 1 98 1.9E-36 T 10-10-2018 IPR035571 UPF0234-like, C-terminal VF_A0594 cd6efff01252fdbaa8733819c9ed3bf3 98 Pfam PF04175 Protein of unknown function (DUF406) 7 94 3.1E-28 T 10-10-2018 IPR005272 Conserved hypothetical protein CHP00743 VF_1052 efca605e800edf1dd61b76a87d90e9f5 486 PIRSF PIRSF002457 8 486 7.1E-116 T 10-10-2018 IPR030676 Citrate carrier CitT-related VF_1052 efca605e800edf1dd61b76a87d90e9f5 486 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 49 476 1.3E-79 T 10-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 VF_1052 efca605e800edf1dd61b76a87d90e9f5 486 Pfam PF00939 Sodium:sulfate symporter transmembrane region 17 476 5.2E-51 T 10-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 TIGRFAM TIGR02062 RNase_B: exoribonuclease II 1 650 0.0 T 10-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 SUPERFAMILY SSF50249 567 650 4.64E-19 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 Pfam PF08206 Ribonuclease B OB domain 24 81 1.7E-19 T 10-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 Gene3D G3DSA:2.40.50.140 1 83 1.9E-28 T 10-10-2018 VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 SUPERFAMILY SSF50249 184 563 1.86E-108 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 Pfam PF00773 RNB domain 193 522 1.5E-84 T 10-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 Pfam PF00575 S1 RNA binding domain 566 647 1.9E-9 T 10-10-2018 IPR003029 S1 domain GO:0003676 VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 Gene3D G3DSA:2.40.50.640 84 157 5.2E-30 T 10-10-2018 VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 SUPERFAMILY SSF50249 84 173 2.74E-29 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 SMART SM00357 23 80 2.0E-13 T 10-10-2018 IPR011129 Cold shock domain GO:0003676 VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 Gene3D G3DSA:2.40.50.140 566 652 5.3E-32 T 10-10-2018 VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 6 650 7.6E-191 T 10-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 SMART SM00316 567 651 0.0081 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 Hamap MF_01036 Exoribonuclease 2 [rnb]. 1 651 40.904 T 10-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 SUPERFAMILY SSF50249 8 81 5.85E-16 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 ProSitePatterns PS01175 Ribonuclease II family signature. 491 515 - T 10-10-2018 IPR022966 Ribonuclease II/R, conserved site VF_A0383 52dc5207e2fcb2818635fd39ac341266 680 SMART SM00955 193 524 4.7E-113 T 10-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 VF_A0315 c433b15da8a80359838c09f70733f8b0 341 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 72 333 2.3E-76 T 10-10-2018 IPR006507 Uncharacterised protein family UPF0283 VF_A0315 c433b15da8a80359838c09f70733f8b0 341 Pfam PF05128 Domain of unknown function (DUF697) 176 334 2.9E-54 T 10-10-2018 IPR021147 Protein of unknown function DUF697 VF_0810 d7e64d36bb802794734d9d99ec663f7c 147 Pfam PF01475 Ferric uptake regulator family 10 130 8.5E-47 T 10-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 VF_0810 d7e64d36bb802794734d9d99ec663f7c 147 SUPERFAMILY SSF46785 5 133 1.4E-43 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0810 d7e64d36bb802794734d9d99ec663f7c 147 Gene3D G3DSA:3.30.1490.190 85 142 1.9E-23 T 10-10-2018 VF_0810 d7e64d36bb802794734d9d99ec663f7c 147 Gene3D G3DSA:1.10.10.10 1 84 3.9E-35 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0513 f2e923dbb76798f149878b651cb0d5b0 436 Pfam PF13629 Pilus formation protein N terminal region 27 93 9.4E-14 T 10-10-2018 IPR032789 Pilus formation protein, N-terminal VF_0513 f2e923dbb76798f149878b651cb0d5b0 436 PRINTS PR00811 Bacterial general secretion pathway protein D signature 353 371 4.9E-6 T 10-10-2018 IPR001775 GspD/PilQ family VF_0513 f2e923dbb76798f149878b651cb0d5b0 436 PRINTS PR00811 Bacterial general secretion pathway protein D signature 182 192 4.9E-6 T 10-10-2018 IPR001775 GspD/PilQ family VF_0513 f2e923dbb76798f149878b651cb0d5b0 436 Pfam PF00263 Bacterial type II and III secretion system protein 233 388 1.2E-39 T 10-10-2018 IPR004846 Type II/III secretion system GO:0009306 VF_2478 ed49b8b5803daf4e7ac0e3dc661f7bb4 540 SUPERFAMILY SSF53795 229 540 5.26E-127 T 10-10-2018 VF_2478 ed49b8b5803daf4e7ac0e3dc661f7bb4 540 PIRSF PIRSF006294 4 540 2.4E-226 T 10-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VF_2478 ed49b8b5803daf4e7ac0e3dc661f7bb4 540 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 13 540 2.5E-274 T 10-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VF_2478 ed49b8b5803daf4e7ac0e3dc661f7bb4 540 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 18 538 54.815 T 10-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VF_2478 ed49b8b5803daf4e7ac0e3dc661f7bb4 540 SUPERFAMILY SSF68923 12 227 1.01E-88 T 10-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 VF_2478 ed49b8b5803daf4e7ac0e3dc661f7bb4 540 Gene3D G3DSA:2.170.8.10 49 350 5.1E-235 T 10-10-2018 VF_2478 ed49b8b5803daf4e7ac0e3dc661f7bb4 540 Pfam PF01293 Phosphoenolpyruvate carboxykinase 24 491 5.5E-211 T 10-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VF_2478 ed49b8b5803daf4e7ac0e3dc661f7bb4 540 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 265 280 - T 10-10-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VF_2478 ed49b8b5803daf4e7ac0e3dc661f7bb4 540 Gene3D G3DSA:3.90.228.20 235 525 5.1E-235 T 10-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 VF_2478 ed49b8b5803daf4e7ac0e3dc661f7bb4 540 Gene3D G3DSA:3.40.449.10 26 234 5.1E-235 T 10-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 VF_2385 30b26d6a9eb5d588c4a2457f1c0776a8 165 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 37 159 5.0E-67 T 10-10-2018 VF_2385 30b26d6a9eb5d588c4a2457f1c0776a8 165 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 22 160 4.0E-63 T 10-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VF_2385 30b26d6a9eb5d588c4a2457f1c0776a8 165 ProSitePatterns PS01029 Dehydroquinase class II signature. 26 43 - T 10-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VF_2385 30b26d6a9eb5d588c4a2457f1c0776a8 165 Gene3D G3DSA:3.40.50.9100 14 165 7.3E-66 T 10-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VF_2385 30b26d6a9eb5d588c4a2457f1c0776a8 165 PIRSF PIRSF001399 19 165 3.4E-59 T 10-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VF_2385 30b26d6a9eb5d588c4a2457f1c0776a8 165 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 165 74.841 T 10-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VF_2385 30b26d6a9eb5d588c4a2457f1c0776a8 165 Pfam PF01220 Dehydroquinase class II 22 158 1.0E-60 T 10-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VF_2385 30b26d6a9eb5d588c4a2457f1c0776a8 165 SUPERFAMILY SSF52304 18 162 2.22E-61 T 10-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VF_A0979 6e1b2ffc323493d1f879268ba971d550 203 Gene3D G3DSA:3.90.930.1 38 171 7.9E-20 T 10-10-2018 VF_A0979 6e1b2ffc323493d1f879268ba971d550 203 SUPERFAMILY SSF82185 49 165 9.16E-25 T 10-10-2018 VF_A0979 6e1b2ffc323493d1f879268ba971d550 203 Pfam PF07661 MORN repeat variant 49 69 0.23 T 10-10-2018 IPR011652 MORN variant VF_A0979 6e1b2ffc323493d1f879268ba971d550 203 Pfam PF07661 MORN repeat variant 96 117 0.053 T 10-10-2018 IPR011652 MORN variant VF_A0979 6e1b2ffc323493d1f879268ba971d550 203 Pfam PF07661 MORN repeat variant 74 93 7.1E-4 T 10-10-2018 IPR011652 MORN variant VF_A0979 6e1b2ffc323493d1f879268ba971d550 203 Pfam PF07661 MORN repeat variant 120 141 0.33 T 10-10-2018 IPR011652 MORN variant VF_A0979 6e1b2ffc323493d1f879268ba971d550 203 Pfam PF07661 MORN repeat variant 144 165 6.7E-4 T 10-10-2018 IPR011652 MORN variant VF_1872 db1ea2d0b598636cd31a90df09d33fa4 262 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 261 4.7E-115 T 10-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 VF_1872 db1ea2d0b598636cd31a90df09d33fa4 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 137 4.3E-40 T 10-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VF_1872 db1ea2d0b598636cd31a90df09d33fa4 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 147 244 3.0E-31 T 10-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VF_1872 db1ea2d0b598636cd31a90df09d33fa4 262 Pfam PF00460 Flagella basal body rod protein 5 35 4.1E-12 T 10-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VF_1872 db1ea2d0b598636cd31a90df09d33fa4 262 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 10-10-2018 IPR019776 Flagellar basal body rod protein, conserved site VF_1872 db1ea2d0b598636cd31a90df09d33fa4 262 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 184 260 1.6E-23 T 10-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VF_1872 db1ea2d0b598636cd31a90df09d33fa4 262 SUPERFAMILY SSF117143 93 223 2.48E-34 T 10-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VF_0744 199e1aea5bb8a4d751ea74c0a0dc6ea5 89 SUPERFAMILY SSF117991 5 89 3.92E-30 T 10-10-2018 IPR027471 YbeD-like domain superfamily VF_0744 199e1aea5bb8a4d751ea74c0a0dc6ea5 89 Pfam PF04359 Protein of unknown function (DUF493) 9 89 2.7E-28 T 10-10-2018 IPR007454 Uncharacterised protein family UPF0250 VF_0744 199e1aea5bb8a4d751ea74c0a0dc6ea5 89 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 3 89 26.196 T 10-10-2018 IPR007454 Uncharacterised protein family UPF0250 VF_0744 199e1aea5bb8a4d751ea74c0a0dc6ea5 89 Gene3D G3DSA:3.30.70.260 3 89 1.6E-31 T 10-10-2018 VF_A0527 0a53bed6c6dda266dcc594bfc77e6091 536 SUPERFAMILY SSF58104 230 530 5.23E-62 T 10-10-2018 VF_A0527 0a53bed6c6dda266dcc594bfc77e6091 536 Gene3D G3DSA:1.10.287.950 193 531 3.5E-56 T 10-10-2018 VF_A0527 0a53bed6c6dda266dcc594bfc77e6091 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 395 424 9.5E-17 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0527 0a53bed6c6dda266dcc594bfc77e6091 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 366 393 9.5E-17 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0527 0a53bed6c6dda266dcc594bfc77e6091 536 SMART SM00283 268 529 7.0E-42 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0527 0a53bed6c6dda266dcc594bfc77e6091 536 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 351 497 7.3E-37 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1749 061f543c9ab0594bbd9487f94f689f3f 515 Pfam PF00916 Sulfate permease family 13 374 2.9E-53 T 10-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 VF_1749 061f543c9ab0594bbd9487f94f689f3f 515 Gene3D G3DSA:3.30.750.24 407 499 2.2E-28 T 10-10-2018 IPR036513 STAS domain superfamily VF_1749 061f543c9ab0594bbd9487f94f689f3f 515 SUPERFAMILY SSF52091 415 498 5.3E-10 T 10-10-2018 IPR036513 STAS domain superfamily VF_1749 061f543c9ab0594bbd9487f94f689f3f 515 Pfam PF01740 STAS domain 415 513 2.5E-9 T 10-10-2018 IPR002645 STAS domain VF_A0538 1c5047fedf2cad0c9fed8807953480a0 406 SUPERFAMILY SSF116734 219 406 3.27E-31 T 10-10-2018 VF_A0538 1c5047fedf2cad0c9fed8807953480a0 406 SUPERFAMILY SSF116734 14 192 5.56E-21 T 10-10-2018 VF_A0538 1c5047fedf2cad0c9fed8807953480a0 406 Pfam PF01420 Type I restriction modification DNA specificity domain 15 179 4.6E-5 T 10-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 VF_A0538 1c5047fedf2cad0c9fed8807953480a0 406 Pfam PF01420 Type I restriction modification DNA specificity domain 218 391 2.5E-8 T 10-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 VF_A0538 1c5047fedf2cad0c9fed8807953480a0 406 Gene3D G3DSA:3.90.220.20 199 406 3.6E-29 T 10-10-2018 VF_A0538 1c5047fedf2cad0c9fed8807953480a0 406 Gene3D G3DSA:3.90.220.20 3 198 2.1E-20 T 10-10-2018 VF_A0786 0bed4a43e1bb3bf377be1c24bb0a6ac5 536 Pfam PF00367 phosphotransferase system, EIIB 463 494 2.7E-12 T 10-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VF_A0786 0bed4a43e1bb3bf377be1c24bb0a6ac5 536 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 473 490 - T 10-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VF_A0786 0bed4a43e1bb3bf377be1c24bb0a6ac5 536 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 430 520 8.9E-17 T 10-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 VF_A0786 0bed4a43e1bb3bf377be1c24bb0a6ac5 536 Pfam PF02378 Phosphotransferase system, EIIC 13 369 3.2E-76 T 10-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VF_A0786 0bed4a43e1bb3bf377be1c24bb0a6ac5 536 SUPERFAMILY SSF55604 460 535 2.88E-19 T 10-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VF_A0786 0bed4a43e1bb3bf377be1c24bb0a6ac5 536 Gene3D G3DSA:3.30.1360.60 455 534 1.5E-24 T 10-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VF_A0202 d7aeb37ff5d7d8f3474fde37067d3158 132 SMART SM00116 13 62 52.0 T 10-10-2018 IPR000644 CBS domain VF_A0202 d7aeb37ff5d7d8f3474fde37067d3158 132 SMART SM00116 80 127 0.0018 T 10-10-2018 IPR000644 CBS domain VF_A0202 d7aeb37ff5d7d8f3474fde37067d3158 132 SUPERFAMILY SSF54631 1 123 1.39E-22 T 10-10-2018 VF_A0202 d7aeb37ff5d7d8f3474fde37067d3158 132 Pfam PF00571 CBS domain 75 122 4.1E-9 T 10-10-2018 IPR000644 CBS domain VF_A0202 d7aeb37ff5d7d8f3474fde37067d3158 132 Gene3D G3DSA:3.10.580.10 1 128 7.2E-24 T 10-10-2018 VF_1036 7ccbec3a84541f97a9bccb8967c6bb33 819 Gene3D G3DSA:3.30.565.10 527 678 6.8E-31 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1036 7ccbec3a84541f97a9bccb8967c6bb33 819 SUPERFAMILY SSF52172 706 819 6.26E-31 T 10-10-2018 IPR011006 CheY-like superfamily VF_1036 7ccbec3a84541f97a9bccb8967c6bb33 819 SUPERFAMILY SSF55874 531 679 7.86E-27 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1036 7ccbec3a84541f97a9bccb8967c6bb33 819 Gene3D G3DSA:1.10.287.130 461 526 6.8E-31 T 10-10-2018 VF_1036 7ccbec3a84541f97a9bccb8967c6bb33 819 Gene3D G3DSA:3.40.50.2300 696 819 9.2E-34 T 10-10-2018 VF_1036 7ccbec3a84541f97a9bccb8967c6bb33 819 Pfam PF00072 Response regulator receiver domain 707 815 3.9E-25 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1036 7ccbec3a84541f97a9bccb8967c6bb33 819 SUPERFAMILY SSF47384 449 500 2.75E-5 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_1036 7ccbec3a84541f97a9bccb8967c6bb33 819 SMART SM00387 573 681 1.7E-16 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1036 7ccbec3a84541f97a9bccb8967c6bb33 819 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 581 678 6.0E-12 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1036 7ccbec3a84541f97a9bccb8967c6bb33 819 PRINTS PR00344 Bacterial sensor protein C-terminal signature 641 659 1.8E-7 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1036 7ccbec3a84541f97a9bccb8967c6bb33 819 PRINTS PR00344 Bacterial sensor protein C-terminal signature 629 639 1.8E-7 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1036 7ccbec3a84541f97a9bccb8967c6bb33 819 PRINTS PR00344 Bacterial sensor protein C-terminal signature 665 678 1.8E-7 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1036 7ccbec3a84541f97a9bccb8967c6bb33 819 PRINTS PR00344 Bacterial sensor protein C-terminal signature 611 625 1.8E-7 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1036 7ccbec3a84541f97a9bccb8967c6bb33 819 SMART SM00448 705 815 3.7E-29 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0175 3dfb7eebd964b2f8f8288c7166cc85a2 306 Pfam PF03773 Predicted permease 12 304 2.3E-50 T 10-10-2018 IPR005524 Predicted permease DUF318 VF_A0868 2557e5c24acac0d7092d661685ded487 497 SUPERFAMILY SSF52540 74 442 2.57E-52 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0868 2557e5c24acac0d7092d661685ded487 497 Gene3D G3DSA:3.40.50.300 204 457 5.3E-63 T 10-10-2018 VF_A0868 2557e5c24acac0d7092d661685ded487 497 Gene3D G3DSA:3.30.450.90 68 198 5.7E-11 T 10-10-2018 VF_A0868 2557e5c24acac0d7092d661685ded487 497 Pfam PF00437 Type II/IV secretion system protein 95 376 3.2E-56 T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_A0868 2557e5c24acac0d7092d661685ded487 497 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 303 317 - T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 SUPERFAMILY SSF55874 180 340 2.88E-37 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 SMART SM00387 234 340 6.0E-29 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 SMART SM00091 21 84 0.0012 T 10-10-2018 IPR000014 PAS domain VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 Pfam PF13188 PAS domain 22 75 9.2E-8 T 10-10-2018 IPR000014 PAS domain VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 Gene3D G3DSA:3.30.565.10 193 346 1.5E-36 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 Gene3D G3DSA:3.30.450.20 15 111 2.8E-7 T 10-10-2018 VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 SMART SM00388 125 191 4.2E-11 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 Gene3D G3DSA:1.10.287.130 112 188 1.1E-8 T 10-10-2018 VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 Pfam PF00512 His Kinase A (phospho-acceptor) domain 125 189 4.4E-10 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 237 339 6.4E-20 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 SUPERFAMILY SSF55785 21 88 5.52E-9 T 10-10-2018 IPR035965 PAS domain superfamily VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 SUPERFAMILY SSF47384 120 191 2.35E-9 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 PRINTS PR00344 Bacterial sensor protein C-terminal signature 300 318 3.8E-17 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 PRINTS PR00344 Bacterial sensor protein C-terminal signature 271 285 3.8E-17 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 337 3.8E-17 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1855 d7eb7ed58b0a6bc6c0195c0f7ae49e13 353 PRINTS PR00344 Bacterial sensor protein C-terminal signature 289 299 3.8E-17 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0920 5f93578f2d4e2d7e488c2164da7db7c1 168 Pfam PF11993 Ribosomal S4P (gammaproteobacterial) 1 164 2.5E-61 T 10-10-2018 IPR021879 Ribosomal S4P (gammaproteobacterial) VF_0394 7433c104e6844a26701ae906edfcbfab 273 Pfam PF00005 ABC transporter 29 176 3.2E-27 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0394 7433c104e6844a26701ae906edfcbfab 273 SMART SM00382 37 233 6.6E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0394 7433c104e6844a26701ae906edfcbfab 273 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0394 7433c104e6844a26701ae906edfcbfab 273 Gene3D G3DSA:3.40.50.300 10 256 7.2E-64 T 10-10-2018 VF_0394 7433c104e6844a26701ae906edfcbfab 273 SUPERFAMILY SSF52540 12 243 3.12E-65 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 Pfam PF00535 Glycosyl transferase family 2 287 456 1.2E-35 T 10-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 SUPERFAMILY SSF53448 284 560 7.74E-54 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 PRINTS PR01439 Cellulose synthase subunit A signature 291 310 6.9E-58 T 10-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 PRINTS PR01439 Cellulose synthase subunit A signature 372 396 6.9E-58 T 10-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 PRINTS PR01439 Cellulose synthase subunit A signature 208 228 6.9E-58 T 10-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 PRINTS PR01439 Cellulose synthase subunit A signature 533 559 6.9E-58 T 10-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 PRINTS PR01439 Cellulose synthase subunit A signature 562 581 6.9E-58 T 10-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 PRINTS PR01439 Cellulose synthase subunit A signature 602 621 6.9E-58 T 10-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 PRINTS PR01439 Cellulose synthase subunit A signature 236 261 6.9E-58 T 10-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 PRINTS PR01439 Cellulose synthase subunit A signature 676 697 6.9E-58 T 10-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 Pfam PF07238 PilZ domain 703 799 4.8E-10 T 10-10-2018 IPR009875 PilZ domain GO:0035438 VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 SUPERFAMILY SSF141371 705 786 4.32E-8 T 10-10-2018 VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 Gene3D G3DSA:3.90.550.10 271 492 1.8E-78 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 TIGRFAM TIGR03030 CelA: cellulose synthase catalytic subunit (UDP-forming) 156 837 1.6E-280 T 10-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 VF_A0884 4baa8a1e1c354d1858d1577d74b1c7c7 867 Gene3D G3DSA:2.40.10.220 700 808 1.2E-10 T 10-10-2018 VF_1977 15812ae6496151753a69247feba03a96 120 SUPERFAMILY SSF101756 17 118 1.44E-31 T 10-10-2018 IPR036700 Bacterial OB-fold superfamily VF_1977 15812ae6496151753a69247feba03a96 120 Gene3D G3DSA:2.40.50.200 14 119 5.2E-33 T 10-10-2018 IPR036700 Bacterial OB-fold superfamily VF_1977 15812ae6496151753a69247feba03a96 120 Pfam PF04076 Bacterial OB fold (BOF) protein 24 117 8.2E-29 T 10-10-2018 IPR005220 Bacterial OB-fold VF_0900 dd4a8f9642622a5c514ca467ce33f61d 573 SUPERFAMILY SSF90123 7 323 3.79E-37 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_0900 dd4a8f9642622a5c514ca467ce33f61d 573 Gene3D G3DSA:1.20.1560.10 1 321 2.1E-25 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_0900 dd4a8f9642622a5c514ca467ce33f61d 573 SUPERFAMILY SSF52540 334 571 1.36E-70 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0900 dd4a8f9642622a5c514ca467ce33f61d 573 Gene3D G3DSA:3.40.50.300 326 573 2.0E-74 T 10-10-2018 VF_0900 dd4a8f9642622a5c514ca467ce33f61d 573 ProSitePatterns PS00211 ABC transporters family signature. 475 489 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0900 dd4a8f9642622a5c514ca467ce33f61d 573 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 6 533 6.6E-137 T 10-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 VF_0900 dd4a8f9642622a5c514ca467ce33f61d 573 SMART SM00382 365 549 2.7E-15 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0900 dd4a8f9642622a5c514ca467ce33f61d 573 Pfam PF00005 ABC transporter 357 502 2.1E-30 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0338 22d8b168d9c2e1feb981c8d436cdcf7b 450 Gene3D G3DSA:3.30.70.260 379 450 1.9E-18 T 10-10-2018 VF_0338 22d8b168d9c2e1feb981c8d436cdcf7b 450 Gene3D G3DSA:1.20.120.1320 42 135 2.3E-95 T 10-10-2018 VF_0338 22d8b168d9c2e1feb981c8d436cdcf7b 450 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 4 449 5.0E-123 T 10-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_0338 22d8b168d9c2e1feb981c8d436cdcf7b 450 SUPERFAMILY SSF55021 377 449 6.87E-16 T 10-10-2018 VF_0338 22d8b168d9c2e1feb981c8d436cdcf7b 450 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 6 449 1.0E-121 T 10-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_0338 22d8b168d9c2e1feb981c8d436cdcf7b 450 Gene3D G3DSA:3.40.1160.10 6 290 2.3E-95 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_0338 22d8b168d9c2e1feb981c8d436cdcf7b 450 PIRSF PIRSF000726 3 450 3.1E-131 T 10-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_0338 22d8b168d9c2e1feb981c8d436cdcf7b 450 SUPERFAMILY SSF53633 5 292 1.09E-73 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_0338 22d8b168d9c2e1feb981c8d436cdcf7b 450 ProSitePatterns PS00324 Aspartokinase signature. 6 14 - T 10-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_0338 22d8b168d9c2e1feb981c8d436cdcf7b 450 Gene3D G3DSA:3.30.70.260 310 378 6.2E-27 T 10-10-2018 VF_0338 22d8b168d9c2e1feb981c8d436cdcf7b 450 Pfam PF00696 Amino acid kinase family 5 278 9.2E-46 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VF_0338 22d8b168d9c2e1feb981c8d436cdcf7b 450 SUPERFAMILY SSF55021 298 394 1.09E-17 T 10-10-2018 VF_1404 32eaf81c535160076df0f30794ad512f 235 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1404 32eaf81c535160076df0f30794ad512f 235 SMART SM00382 29 220 1.3E-6 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1404 32eaf81c535160076df0f30794ad512f 235 Pfam PF00005 ABC transporter 25 165 3.4E-28 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1404 32eaf81c535160076df0f30794ad512f 235 SUPERFAMILY SSF52540 4 225 6.07E-51 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1404 32eaf81c535160076df0f30794ad512f 235 Gene3D G3DSA:3.40.50.300 4 233 1.1E-52 T 10-10-2018 VF_1219 8676fd733878bcbf522225462672d6c7 439 Pfam PF01794 Ferric reductase like transmembrane component 37 164 4.1E-12 T 10-10-2018 IPR013130 Ferric reductase transmembrane component-like domain VF_1219 8676fd733878bcbf522225462672d6c7 439 Gene3D G3DSA:3.40.50.80 309 439 2.1E-19 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_1219 8676fd733878bcbf522225462672d6c7 439 SUPERFAMILY SSF63380 230 307 1.42E-12 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VF_1219 8676fd733878bcbf522225462672d6c7 439 SUPERFAMILY SSF52343 307 436 6.94E-20 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_1219 8676fd733878bcbf522225462672d6c7 439 Pfam PF08022 FAD-binding domain 233 302 3.8E-6 T 10-10-2018 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 VF_1219 8676fd733878bcbf522225462672d6c7 439 Gene3D G3DSA:2.40.30.10 215 308 6.1E-11 T 10-10-2018 VF_0265 f7a18426bf06748d30b242d2d3ba97c2 459 SUPERFAMILY SSF51984 1 89 9.42E-23 T 10-10-2018 VF_0265 f7a18426bf06748d30b242d2d3ba97c2 459 Pfam PF02875 Mur ligase family, glutamate ligase domain 311 367 1.3E-11 T 10-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VF_0265 f7a18426bf06748d30b242d2d3ba97c2 459 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 449 59.55 T 10-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 VF_0265 f7a18426bf06748d30b242d2d3ba97c2 459 SUPERFAMILY SSF53623 97 308 4.45E-52 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VF_0265 f7a18426bf06748d30b242d2d3ba97c2 459 Gene3D G3DSA:3.40.1190.10 91 313 2.0E-56 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VF_0265 f7a18426bf06748d30b242d2d3ba97c2 459 Pfam PF01225 Mur ligase family, catalytic domain 2 101 2.0E-19 T 10-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 VF_0265 f7a18426bf06748d30b242d2d3ba97c2 459 Gene3D G3DSA:3.90.190.20 314 449 4.1E-31 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VF_0265 f7a18426bf06748d30b242d2d3ba97c2 459 SUPERFAMILY SSF53244 311 446 4.19E-39 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VF_0265 f7a18426bf06748d30b242d2d3ba97c2 459 Gene3D G3DSA:3.40.50.720 1 90 4.7E-36 T 10-10-2018 VF_0265 f7a18426bf06748d30b242d2d3ba97c2 459 Pfam PF08245 Mur ligase middle domain 108 290 2.7E-21 T 10-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VF_0265 f7a18426bf06748d30b242d2d3ba97c2 459 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 448 3.6E-259 T 10-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 VF_1808 711a7726c1f4fefcbddb8685319ee083 156 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 78 7.9E-9 T 10-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 VF_1808 711a7726c1f4fefcbddb8685319ee083 156 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 156 1.4E-40 T 10-10-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0101006 VF_1808 711a7726c1f4fefcbddb8685319ee083 156 SMART SM00855 2 118 0.0028 T 10-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 VF_1808 711a7726c1f4fefcbddb8685319ee083 156 SUPERFAMILY SSF53254 1 152 2.94E-23 T 10-10-2018 IPR029033 Histidine phosphatase superfamily VF_1808 711a7726c1f4fefcbddb8685319ee083 156 Gene3D G3DSA:3.40.50.1240 1 156 1.0E-35 T 10-10-2018 IPR029033 Histidine phosphatase superfamily VF_1808 711a7726c1f4fefcbddb8685319ee083 156 PIRSF PIRSF000709 1 77 0.0069 T 10-10-2018 VF_A0137 28eebf892236f900fdc3cf1f1473789e 196 Gene3D G3DSA:3.40.50.150 1 194 2.0E-43 T 10-10-2018 VF_A0137 28eebf892236f900fdc3cf1f1473789e 196 SUPERFAMILY SSF53335 3 183 1.94E-27 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_A0137 28eebf892236f900fdc3cf1f1473789e 196 Pfam PF13649 Methyltransferase domain 38 127 4.4E-14 T 10-10-2018 VF_0117 d4041b5c83d944f0568d9aba49f97c08 239 Gene3D G3DSA:3.40.50.2020 123 239 4.1E-13 T 10-10-2018 VF_0117 d4041b5c83d944f0568d9aba49f97c08 239 SUPERFAMILY SSF53271 62 235 2.1E-31 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like VF_0117 d4041b5c83d944f0568d9aba49f97c08 239 Pfam PF00156 Phosphoribosyl transferase domain 190 236 1.8E-6 T 10-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VF_2452 3ead4518fb97732167189a86f2d027f4 222 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 213 2.8E-88 T 10-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 VF_2452 3ead4518fb97732167189a86f2d027f4 222 SUPERFAMILY SSF52540 1 219 3.74E-65 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2452 3ead4518fb97732167189a86f2d027f4 222 Gene3D G3DSA:3.40.50.300 1 222 7.2E-63 T 10-10-2018 VF_2452 3ead4518fb97732167189a86f2d027f4 222 SMART SM00382 27 218 2.8E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2452 3ead4518fb97732167189a86f2d027f4 222 Pfam PF00005 ABC transporter 18 165 7.0E-37 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_2452 3ead4518fb97732167189a86f2d027f4 222 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_2537 abc61f6fc043f6db8dc28e8fe731e371 161 Gene3D G3DSA:3.40.50.7700 1 161 2.1E-72 T 10-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 VF_2537 abc61f6fc043f6db8dc28e8fe731e371 161 Pfam PF00731 AIR carboxylase 2 150 1.3E-63 T 10-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 VF_2537 abc61f6fc043f6db8dc28e8fe731e371 161 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 3 157 1.2E-65 T 10-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 VF_2537 abc61f6fc043f6db8dc28e8fe731e371 161 SMART SM01001 1 152 1.9E-101 T 10-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 VF_2537 abc61f6fc043f6db8dc28e8fe731e371 161 SUPERFAMILY SSF52255 2 158 6.54E-66 T 10-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 VF_2537 abc61f6fc043f6db8dc28e8fe731e371 161 PIRSF PIRSF001338 1 160 2.5E-67 T 10-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 VF_2537 abc61f6fc043f6db8dc28e8fe731e371 161 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 3 156 31.812 T 10-10-2018 IPR033747 Class I PurE VF_0423 dce4bbfb059734dff9ea40e8e56df00f 306 TIGRFAM TIGR03814 Gln_ase: glutaminase A 8 306 1.1E-130 T 10-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 VF_0423 dce4bbfb059734dff9ea40e8e56df00f 306 Hamap MF_00313 Glutaminase [glsA]. 4 306 47.432 T 10-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 VF_0423 dce4bbfb059734dff9ea40e8e56df00f 306 SUPERFAMILY SSF56601 3 306 9.75E-117 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VF_0423 dce4bbfb059734dff9ea40e8e56df00f 306 Gene3D G3DSA:3.40.710.10 1 306 5.0E-110 T 10-10-2018 VF_0423 dce4bbfb059734dff9ea40e8e56df00f 306 Pfam PF04960 Glutaminase 22 306 9.4E-112 T 10-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 VF_0987 cab93bf521262696246a602cc7b1e66f 650 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 562 591 1.6E-7 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_0987 cab93bf521262696246a602cc7b1e66f 650 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 514 543 1.6E-7 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_0987 cab93bf521262696246a602cc7b1e66f 650 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 430 1.6E-7 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_0987 cab93bf521262696246a602cc7b1e66f 650 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 451 616 2.8E-41 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0987 cab93bf521262696246a602cc7b1e66f 650 SMART SM00283 387 648 6.2E-52 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0987 cab93bf521262696246a602cc7b1e66f 650 SUPERFAMILY SSF58104 341 649 2.7E-62 T 10-10-2018 VF_0987 cab93bf521262696246a602cc7b1e66f 650 Gene3D G3DSA:1.10.287.950 320 650 3.0E-62 T 10-10-2018 VF_1907 ac9ef5aabe56aeb4f8505aed59090ad0 174 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_1907 ac9ef5aabe56aeb4f8505aed59090ad0 174 Hamap MF_02201 Ferredoxin-type protein NapF [napF]. 33 170 23.402 T 10-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 VF_1907 ac9ef5aabe56aeb4f8505aed59090ad0 174 Gene3D G3DSA:3.30.70.20 39 92 7.3E-9 T 10-10-2018 VF_1907 ac9ef5aabe56aeb4f8505aed59090ad0 174 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 13 164 4.7E-41 T 10-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 VF_1907 ac9ef5aabe56aeb4f8505aed59090ad0 174 SUPERFAMILY SSF54862 40 166 1.4E-21 T 10-10-2018 VF_1907 ac9ef5aabe56aeb4f8505aed59090ad0 174 Gene3D G3DSA:3.30.70.20 103 173 4.1E-12 T 10-10-2018 VF_1907 ac9ef5aabe56aeb4f8505aed59090ad0 174 Pfam PF12838 4Fe-4S dicluster domain 116 163 1.5E-8 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_1907 ac9ef5aabe56aeb4f8505aed59090ad0 174 Pfam PF13187 4Fe-4S dicluster domain 44 90 2.4E-7 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_2150 5ba1d6e43b8615ea477184f3efb90607 543 SUPERFAMILY SSF161098 283 537 9.38E-38 T 10-10-2018 IPR035906 MetI-like superfamily VF_2150 5ba1d6e43b8615ea477184f3efb90607 543 Gene3D G3DSA:1.10.3720.10 6 269 8.8E-50 T 10-10-2018 IPR035906 MetI-like superfamily VF_2150 5ba1d6e43b8615ea477184f3efb90607 543 Gene3D G3DSA:1.10.3720.10 287 542 2.5E-33 T 10-10-2018 IPR035906 MetI-like superfamily VF_2150 5ba1d6e43b8615ea477184f3efb90607 543 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 68 257 1.8E-8 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_2150 5ba1d6e43b8615ea477184f3efb90607 543 SUPERFAMILY SSF161098 5 255 2.09E-42 T 10-10-2018 IPR035906 MetI-like superfamily VF_1444 6fe21103dfdb21a0cf592d730a92e60d 139 Pfam PF05025 RbsD / FucU transport protein family 1 138 2.8E-49 T 10-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 VF_1444 6fe21103dfdb21a0cf592d730a92e60d 139 Gene3D G3DSA:3.40.1650.10 8 136 5.5E-38 T 10-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 VF_1444 6fe21103dfdb21a0cf592d730a92e60d 139 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 139 33.378 T 10-10-2018 IPR023064 D-ribose pyranase GO:0016872 VF_1444 6fe21103dfdb21a0cf592d730a92e60d 139 SUPERFAMILY SSF102546 1 139 8.11E-44 T 10-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 VF_2202 c46de122dac3e62fe0e5f34c661644ed 376 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 317 341 - T 10-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2202 c46de122dac3e62fe0e5f34c661644ed 376 Pfam PF01098 Cell cycle protein 5 359 3.9E-115 T 10-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2202 c46de122dac3e62fe0e5f34c661644ed 376 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 3 358 2.9E-130 T 10-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2202 c46de122dac3e62fe0e5f34c661644ed 376 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 1 367 40.622 T 10-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_A0589 1c791159d0927655a6b911756f931123 374 Pfam PF12698 ABC-2 family transporter protein 19 361 3.2E-34 T 10-10-2018 VF_A0589 1c791159d0927655a6b911756f931123 374 Gene3D G3DSA:3.40.1710.10 40 118 1.7E-8 T 10-10-2018 VF_0616 245bf3079c1e179ad2ea0e51f61f215b 168 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 2.7E-66 T 10-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 VF_0616 245bf3079c1e179ad2ea0e51f61f215b 168 Pfam PF02082 Transcriptional regulator 1 83 1.8E-27 T 10-10-2018 IPR000944 Transcription regulator Rrf2-type VF_0616 245bf3079c1e179ad2ea0e51f61f215b 168 SUPERFAMILY SSF46785 2 133 2.62E-35 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0616 245bf3079c1e179ad2ea0e51f61f215b 168 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 3.3E-47 T 10-10-2018 IPR000944 Transcription regulator Rrf2-type VF_0616 245bf3079c1e179ad2ea0e51f61f215b 168 Gene3D G3DSA:1.10.10.10 1 144 4.2E-54 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0616 245bf3079c1e179ad2ea0e51f61f215b 168 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 10-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site VF_0616 245bf3079c1e179ad2ea0e51f61f215b 168 Hamap MF_01176 HTH-type transcriptional regulator IscR [iscR]. 1 168 48.217 T 10-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 VF_1061 f092a68b3eb0bb609395b12357e73ce6 455 Pfam PF03606 C4-dicarboxylate anaerobic carrier 5 450 9.0E-81 T 10-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 VF_1061 f092a68b3eb0bb609395b12357e73ce6 455 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 63 444 6.0E-108 T 10-10-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 VF_A1119 2a52ad1fc54c7fb9e49f580f270fedd7 143 Gene3D G3DSA:1.20.120.10 18 141 6.6E-25 T 10-10-2018 VF_A1119 2a52ad1fc54c7fb9e49f580f270fedd7 143 SUPERFAMILY SSF47175 23 141 3.83E-28 T 10-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 VF_A1119 2a52ad1fc54c7fb9e49f580f270fedd7 143 Pfam PF01322 Cytochrome C' 23 140 4.5E-25 T 10-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 VF_1266 c326ce7297d21cf23b7330f1b4249462 447 Pfam PF01554 MatE 247 405 5.5E-23 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_1266 c326ce7297d21cf23b7330f1b4249462 447 Pfam PF01554 MatE 20 179 3.3E-26 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_1266 c326ce7297d21cf23b7330f1b4249462 447 TIGRFAM TIGR00797 matE: MATE efflux family protein 20 418 2.0E-60 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_1266 c326ce7297d21cf23b7330f1b4249462 447 PIRSF PIRSF006603 4 447 4.9E-67 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_0312 6f50a408ce9cf50205096539775efc9e 253 PIRSF PIRSF000857 4 248 1.2E-53 T 10-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 VF_0312 6f50a408ce9cf50205096539775efc9e 253 Gene3D G3DSA:3.40.50.620 3 216 1.1E-63 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0312 6f50a408ce9cf50205096539775efc9e 253 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 9 243 38.653 T 10-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 VF_0312 6f50a408ce9cf50205096539775efc9e 253 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 33 243 2.4E-83 T 10-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 VF_0312 6f50a408ce9cf50205096539775efc9e 253 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 21 242 3.8E-87 T 10-10-2018 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8 VF_0312 6f50a408ce9cf50205096539775efc9e 253 SUPERFAMILY SSF52402 21 208 3.35E-54 T 10-10-2018 VF_0312 6f50a408ce9cf50205096539775efc9e 253 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 47 219 3.5E-48 T 10-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 VF_0410 ac567932085ac2a8c6e802ed704d52e6 280 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 56 141 1.5E-6 T 10-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VF_0410 ac567932085ac2a8c6e802ed704d52e6 280 Gene3D G3DSA:2.60.120.260 27 164 1.6E-10 T 10-10-2018 IPR008979 Galactose-binding-like domain superfamily VF_0410 ac567932085ac2a8c6e802ed704d52e6 280 SUPERFAMILY SSF49785 29 134 1.0E-15 T 10-10-2018 IPR008979 Galactose-binding-like domain superfamily VF_1911 bf5af3784ad3ebad6880ab8b2644e39f 93 PIRSF PIRSF037266 1 93 3.0E-39 T 10-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 VF_1911 bf5af3784ad3ebad6880ab8b2644e39f 93 Gene3D G3DSA:1.10.10.10 2 93 2.8E-36 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1911 bf5af3784ad3ebad6880ab8b2644e39f 93 Pfam PF09904 Winged helix-turn helix 3 91 2.0E-38 T 10-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 VF_A0809 fd42c9d5c5a0a7b7869bdfae5063a825 738 Pfam PF02446 4-alpha-glucanotransferase 189 710 2.5E-125 T 10-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 VF_A0809 fd42c9d5c5a0a7b7869bdfae5063a825 738 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 140 728 1.2E-194 T 10-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 VF_A0809 fd42c9d5c5a0a7b7869bdfae5063a825 738 SUPERFAMILY SSF51445 183 726 5.69E-146 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_A0809 fd42c9d5c5a0a7b7869bdfae5063a825 738 Gene3D G3DSA:3.20.20.80 185 728 4.7E-116 T 10-10-2018 VF_A0592 07216b2f8d3d46ad07c7e2a0f510a4d7 452 Pfam PF02321 Outer membrane efflux protein 27 228 4.2E-23 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VF_A0592 07216b2f8d3d46ad07c7e2a0f510a4d7 452 Pfam PF02321 Outer membrane efflux protein 253 437 1.6E-26 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VF_A0592 07216b2f8d3d46ad07c7e2a0f510a4d7 452 SUPERFAMILY SSF56954 4 437 2.35E-63 T 10-10-2018 VF_A0592 07216b2f8d3d46ad07c7e2a0f510a4d7 452 Gene3D G3DSA:1.20.1600.10 18 443 3.7E-60 T 10-10-2018 VF_A0725 ecbb6e89a06618c777b52f7381fab9ba 346 Gene3D G3DSA:3.60.60.10 24 341 1.0E-56 T 10-10-2018 VF_A0725 ecbb6e89a06618c777b52f7381fab9ba 346 SUPERFAMILY SSF56235 27 329 3.94E-60 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_A0725 ecbb6e89a06618c777b52f7381fab9ba 346 Pfam PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family 27 251 2.3E-32 T 10-10-2018 IPR029132 Choloylglycine hydrolase/NAAA C-terminal VF_A0244 6e5964bc388ef6492c864e0c03e5068d 568 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 440 559 1.9E-27 T 10-10-2018 IPR000160 GGDEF domain VF_A0244 6e5964bc388ef6492c864e0c03e5068d 568 Gene3D G3DSA:3.20.20.450 5 240 3.0E-37 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0244 6e5964bc388ef6492c864e0c03e5068d 568 SUPERFAMILY SSF141868 6 228 1.09E-37 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0244 6e5964bc388ef6492c864e0c03e5068d 568 Pfam PF00990 Diguanylate cyclase, GGDEF domain 441 559 3.1E-28 T 10-10-2018 IPR000160 GGDEF domain VF_A0244 6e5964bc388ef6492c864e0c03e5068d 568 SMART SM00052 1 221 1.0E-7 T 10-10-2018 IPR001633 EAL domain VF_A0244 6e5964bc388ef6492c864e0c03e5068d 568 SUPERFAMILY SSF55073 434 558 1.26E-27 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0244 6e5964bc388ef6492c864e0c03e5068d 568 Gene3D G3DSA:3.30.70.270 417 565 2.1E-31 T 10-10-2018 VF_A0244 6e5964bc388ef6492c864e0c03e5068d 568 SMART SM00267 407 568 8.5E-25 T 10-10-2018 IPR000160 GGDEF domain VF_A0244 6e5964bc388ef6492c864e0c03e5068d 568 Pfam PF00563 EAL domain 9 216 6.1E-31 T 10-10-2018 IPR001633 EAL domain VF_A0210 768270ff25599b6db59fd876b8eb8958 542 Pfam PF08019 Domain of unknown function (DUF1705) 61 212 7.1E-44 T 10-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 VF_A0210 768270ff25599b6db59fd876b8eb8958 542 SUPERFAMILY SSF53649 240 532 5.01E-17 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_A0210 768270ff25599b6db59fd876b8eb8958 542 Gene3D G3DSA:3.40.720.10 216 542 2.3E-81 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VF_A0210 768270ff25599b6db59fd876b8eb8958 542 Pfam PF00884 Sulfatase 239 528 6.4E-42 T 10-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 Gene3D G3DSA:2.60.120.10 310 391 4.3E-128 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 Gene3D G3DSA:1.10.441.10 157 309 4.3E-128 T 10-10-2018 VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 PRINTS PR00714 Phosphomannose isomerase type I signature 12 30 7.0E-67 T 10-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 PRINTS PR00714 Phosphomannose isomerase type I signature 40 55 7.0E-67 T 10-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 PRINTS PR00714 Phosphomannose isomerase type I signature 245 264 7.0E-67 T 10-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 PRINTS PR00714 Phosphomannose isomerase type I signature 133 156 7.0E-67 T 10-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 PRINTS PR00714 Phosphomannose isomerase type I signature 264 283 7.0E-67 T 10-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 PRINTS PR00714 Phosphomannose isomerase type I signature 283 302 7.0E-67 T 10-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 PRINTS PR00714 Phosphomannose isomerase type I signature 88 109 7.0E-67 T 10-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 PRINTS PR00714 Phosphomannose isomerase type I signature 229 244 7.0E-67 T 10-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 SUPERFAMILY SSF51182 8 385 2.62E-105 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 PIRSF PIRSF001480 7 398 2.5E-100 T 10-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 133 141 - T 10-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 Gene3D G3DSA:2.60.120.10 14 284 4.3E-128 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 7 389 2.1E-93 T 10-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 Pfam PF01238 Phosphomannose isomerase type I 11 362 4.0E-81 T 10-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VF_A0710 bdc7fed25df5a7bd8d6346515375737e 398 ProSitePatterns PS00966 Phosphomannose isomerase type I signature 2. 264 289 - T 10-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VF_A1164 60fa042b327f349e2b036248725777f4 202 PRINTS PR01021 OMPA domain signature 112 127 1.1E-6 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A1164 60fa042b327f349e2b036248725777f4 202 PRINTS PR01021 OMPA domain signature 127 143 1.1E-6 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A1164 60fa042b327f349e2b036248725777f4 202 PRINTS PR01021 OMPA domain signature 82 104 1.1E-6 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_A1164 60fa042b327f349e2b036248725777f4 202 Gene3D G3DSA:3.30.1330.60 57 181 1.8E-28 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A1164 60fa042b327f349e2b036248725777f4 202 Pfam PF00691 OmpA family 81 176 2.0E-19 T 10-10-2018 IPR006665 OmpA-like domain VF_A1164 60fa042b327f349e2b036248725777f4 202 SUPERFAMILY SSF103088 53 181 3.4E-29 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A0896 87d66e3c92f78548db7174b3f1826092 407 SUPERFAMILY SSF111369 67 160 3.53E-7 T 10-10-2018 VF_A0896 87d66e3c92f78548db7174b3f1826092 407 Gene3D G3DSA:1.10.287.470 100 148 1.9E-8 T 10-10-2018 VF_A0896 87d66e3c92f78548db7174b3f1826092 407 Gene3D G3DSA:2.40.50.100 71 99 1.9E-8 T 10-10-2018 VF_A0896 87d66e3c92f78548db7174b3f1826092 407 Gene3D G3DSA:2.40.50.100 249 281 9.0E-14 T 10-10-2018 VF_A0896 87d66e3c92f78548db7174b3f1826092 407 SUPERFAMILY SSF111369 183 278 4.05E-8 T 10-10-2018 VF_A0896 87d66e3c92f78548db7174b3f1826092 407 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 179 321 7.7E-8 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VF_A0896 87d66e3c92f78548db7174b3f1826092 407 Gene3D G3DSA:1.10.287.470 194 248 9.0E-14 T 10-10-2018 VF_A0896 87d66e3c92f78548db7174b3f1826092 407 Gene3D G3DSA:2.40.30.170 282 357 9.0E-14 T 10-10-2018 VF_A0896 87d66e3c92f78548db7174b3f1826092 407 Pfam PF13533 Biotin-lipoyl like 71 110 2.9E-9 T 10-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VF_0028 e90aacf54b8e3b14be2c5880ef26084b 174 Pfam PF12724 Flavodoxin domain 5 152 1.7E-46 T 10-10-2018 IPR026816 Flavodoxin domain VF_0028 e90aacf54b8e3b14be2c5880ef26084b 174 Gene3D G3DSA:3.40.50.360 3 116 2.9E-9 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_0028 e90aacf54b8e3b14be2c5880ef26084b 174 SUPERFAMILY SSF52218 3 171 1.82E-28 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_2069 7acbd35648c6088e4f1381f268d276f7 208 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 3 208 38.196 T 10-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 VF_2069 7acbd35648c6088e4f1381f268d276f7 208 SUPERFAMILY SSF53335 3 204 1.53E-44 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_2069 7acbd35648c6088e4f1381f268d276f7 208 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 130 145 - T 10-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 VF_2069 7acbd35648c6088e4f1381f268d276f7 208 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 4 207 1.2E-79 T 10-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 VF_2069 7acbd35648c6088e4f1381f268d276f7 208 Gene3D G3DSA:3.40.50.150 1 207 1.9E-74 T 10-10-2018 VF_2069 7acbd35648c6088e4f1381f268d276f7 208 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 5 205 1.6E-68 T 10-10-2018 VF_0280 4e965b0d6624d5d0d2e59e5506910547 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 1.9E-34 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0280 4e965b0d6624d5d0d2e59e5506910547 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.9E-34 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0280 4e965b0d6624d5d0d2e59e5506910547 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.9E-34 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0280 4e965b0d6624d5d0d2e59e5506910547 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 1.9E-34 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0280 4e965b0d6624d5d0d2e59e5506910547 390 PIRSF PIRSF002401 1 374 4.2E-133 T 10-10-2018 IPR035101 GTP-binding protein, Obg-type VF_0280 4e965b0d6624d5d0d2e59e5506910547 390 Gene3D G3DSA:3.40.50.300 159 335 4.7E-50 T 10-10-2018 VF_0280 4e965b0d6624d5d0d2e59e5506910547 390 SUPERFAMILY SSF52540 151 339 3.69E-45 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0280 4e965b0d6624d5d0d2e59e5506910547 390 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 5.6E-140 T 10-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 VF_0280 4e965b0d6624d5d0d2e59e5506910547 390 Pfam PF01018 GTP1/OBG 4 156 9.3E-55 T 10-10-2018 IPR006169 GTP1/OBG domain VF_0280 4e965b0d6624d5d0d2e59e5506910547 390 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 10-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 VF_0280 4e965b0d6624d5d0d2e59e5506910547 390 SUPERFAMILY SSF82051 2 157 1.7E-54 T 10-10-2018 IPR036726 GTP1/OBG domain superfamily VF_0280 4e965b0d6624d5d0d2e59e5506910547 390 Hamap MF_01454 GTPase Obg [obg]. 2 333 46.491 T 10-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 VF_0280 4e965b0d6624d5d0d2e59e5506910547 390 Pfam PF01926 50S ribosome-binding GTPase 161 284 3.5E-23 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0280 4e965b0d6624d5d0d2e59e5506910547 390 Gene3D G3DSA:2.70.210.12 1 158 4.9E-58 T 10-10-2018 IPR036726 GTP1/OBG domain superfamily VF_A0424 a403ecfa70d2c81ddbe8b382eb3481e3 582 SUPERFAMILY SSF90123 14 327 7.59E-76 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_A0424 a403ecfa70d2c81ddbe8b382eb3481e3 582 Gene3D G3DSA:1.20.1560.10 1 328 8.4E-85 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_A0424 a403ecfa70d2c81ddbe8b382eb3481e3 582 Gene3D G3DSA:3.40.50.300 329 581 1.7E-94 T 10-10-2018 VF_A0424 a403ecfa70d2c81ddbe8b382eb3481e3 582 Pfam PF00664 ABC transporter transmembrane region 28 292 1.3E-54 T 10-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VF_A0424 a403ecfa70d2c81ddbe8b382eb3481e3 582 SMART SM00382 368 561 2.6E-20 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0424 a403ecfa70d2c81ddbe8b382eb3481e3 582 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 12 581 1.3E-237 T 10-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 VF_A0424 a403ecfa70d2c81ddbe8b382eb3481e3 582 Pfam PF00005 ABC transporter 359 509 1.2E-35 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0424 a403ecfa70d2c81ddbe8b382eb3481e3 582 SUPERFAMILY SSF52540 331 580 6.48E-92 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0424 a403ecfa70d2c81ddbe8b382eb3481e3 582 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1875 e463101716ad9acb5569c3ea8842a3a9 236 Pfam PF13861 FlgD Tudor-like domain 94 230 7.5E-15 T 10-10-2018 IPR025963 FlgD Tudor-like domain VF_1875 e463101716ad9acb5569c3ea8842a3a9 236 Gene3D G3DSA:2.30.30.910 95 222 1.5E-36 T 10-10-2018 VF_1875 e463101716ad9acb5569c3ea8842a3a9 236 Pfam PF13860 FlgD Ig-like domain 118 185 7.0E-20 T 10-10-2018 IPR025965 FlgD Ig-like domain VF_1875 e463101716ad9acb5569c3ea8842a3a9 236 Gene3D G3DSA:2.60.40.4070 111 197 1.5E-36 T 10-10-2018 VF_1875 e463101716ad9acb5569c3ea8842a3a9 236 Pfam PF03963 Flagellar hook capping protein - N-terminal region 20 86 9.9E-23 T 10-10-2018 IPR005648 Flagellar hook capping protein VF_A0565 c172e0f6368b766ba3a35d82f4f7b25a 178 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 70 83 - T 10-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 VF_A0565 c172e0f6368b766ba3a35d82f4f7b25a 178 Gene3D G3DSA:3.40.980.10 1 178 1.5E-66 T 10-10-2018 IPR036425 MoaB/Mog-like domain superfamily VF_A0565 c172e0f6368b766ba3a35d82f4f7b25a 178 Pfam PF00994 Probable molybdopterin binding domain 8 152 2.0E-31 T 10-10-2018 IPR001453 MoaB/Mog domain VF_A0565 c172e0f6368b766ba3a35d82f4f7b25a 178 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 5 148 1.4E-39 T 10-10-2018 IPR001453 MoaB/Mog domain VF_A0565 c172e0f6368b766ba3a35d82f4f7b25a 178 SMART SM00852 8 154 9.8E-30 T 10-10-2018 IPR001453 MoaB/Mog domain VF_A0565 c172e0f6368b766ba3a35d82f4f7b25a 178 SUPERFAMILY SSF53218 4 171 1.09E-47 T 10-10-2018 IPR036425 MoaB/Mog-like domain superfamily VF_0088 3b753dd723a9ceaaadfc564cec9930bf 199 Pfam PF03942 DTW domain 6 185 3.4E-41 T 10-10-2018 IPR005636 DTW VF_0088 3b753dd723a9ceaaadfc564cec9930bf 199 SMART SM01144 5 193 1.9E-54 T 10-10-2018 IPR005636 DTW VF_2137 6f9b3fe4f6d942eba2eed2eb96057678 339 Pfam PF08468 Methyltransferase small domain N-terminal 7 162 4.0E-56 T 10-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 VF_2137 6f9b3fe4f6d942eba2eed2eb96057678 339 Pfam PF05175 Methyltransferase small domain 171 335 5.8E-59 T 10-10-2018 IPR007848 Methyltransferase small domain GO:0008168 VF_2137 6f9b3fe4f6d942eba2eed2eb96057678 339 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 268 274 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VF_2137 6f9b3fe4f6d942eba2eed2eb96057678 339 Gene3D G3DSA:3.40.50.150 1 157 5.7E-49 T 10-10-2018 VF_2137 6f9b3fe4f6d942eba2eed2eb96057678 339 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 3 339 45.962 T 10-10-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 VF_2137 6f9b3fe4f6d942eba2eed2eb96057678 339 Gene3D G3DSA:3.40.50.150 158 339 3.6E-41 T 10-10-2018 VF_2137 6f9b3fe4f6d942eba2eed2eb96057678 339 SUPERFAMILY SSF53335 155 330 4.44E-26 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_0877 a211c5391ad4ef544a6dfaa7a1dce7cc 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 3.7E-19 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0877 a211c5391ad4ef544a6dfaa7a1dce7cc 301 Gene3D G3DSA:1.10.10.10 2 88 2.0E-25 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0877 a211c5391ad4ef544a6dfaa7a1dce7cc 301 Pfam PF03466 LysR substrate binding domain 89 293 7.4E-36 T 10-10-2018 IPR005119 LysR, substrate-binding VF_0877 a211c5391ad4ef544a6dfaa7a1dce7cc 301 SUPERFAMILY SSF46785 1 111 1.03E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0877 a211c5391ad4ef544a6dfaa7a1dce7cc 301 Gene3D G3DSA:3.40.190.290 92 293 3.9E-56 T 10-10-2018 VF_0877 a211c5391ad4ef544a6dfaa7a1dce7cc 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 9.5E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0877 a211c5391ad4ef544a6dfaa7a1dce7cc 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 9.5E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0877 a211c5391ad4ef544a6dfaa7a1dce7cc 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 9.5E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0877 a211c5391ad4ef544a6dfaa7a1dce7cc 301 SUPERFAMILY SSF53850 90 295 6.52E-38 T 10-10-2018 VF_0103 1f462e6cc08b7250034c07bccbcfe7ec 229 Gene3D G3DSA:3.40.1280.10 2 191 1.5E-60 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VF_0103 1f462e6cc08b7250034c07bccbcfe7ec 229 SUPERFAMILY SSF75217 4 174 4.45E-49 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases VF_0103 1f462e6cc08b7250034c07bccbcfe7ec 229 Pfam PF00588 SpoU rRNA Methylase family 20 159 3.8E-35 T 10-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VF_0103 1f462e6cc08b7250034c07bccbcfe7ec 229 Pfam PF12105 SpoU, rRNA methylase, C-terminal 163 218 4.8E-22 T 10-10-2018 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal GO:0009020 VF_0103 1f462e6cc08b7250034c07bccbcfe7ec 229 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 2 197 35.046 T 10-10-2018 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 VF_0607 46447d9971b99aef825bf25a4f957c4a 107 PIRSF PIRSF000699 2 107 8.4E-34 T 10-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 VF_0607 46447d9971b99aef825bf25a4f957c4a 107 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 10 102 7.2E-34 T 10-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 VF_0607 46447d9971b99aef825bf25a4f957c4a 107 Gene3D G3DSA:1.20.58.280 4 106 7.7E-36 T 10-10-2018 VF_0607 46447d9971b99aef825bf25a4f957c4a 107 SUPERFAMILY SSF46973 5 102 7.32E-35 T 10-10-2018 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily GO:0009401 VF_1927 71fd8393da43520c7e35a0a5c73c6962 214 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 8 214 44.279 T 10-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 VF_1927 71fd8393da43520c7e35a0a5c73c6962 214 SUPERFAMILY SSF53271 9 212 1.84E-66 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like VF_1927 71fd8393da43520c7e35a0a5c73c6962 214 Pfam PF14681 Uracil phosphoribosyltransferase 13 213 4.3E-63 T 10-10-2018 VF_1927 71fd8393da43520c7e35a0a5c73c6962 214 Gene3D G3DSA:3.40.50.2020 7 214 6.0E-73 T 10-10-2018 VF_1927 71fd8393da43520c7e35a0a5c73c6962 214 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 8 214 3.3E-91 T 10-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 VF_1712 acfdacad3fa6a228f7a9674bcbbf321b 233 SUPERFAMILY SSF53067 4 108 1.51E-30 T 10-10-2018 VF_1712 acfdacad3fa6a228f7a9674bcbbf321b 233 Pfam PF00814 Glycoprotease family 31 152 1.4E-29 T 10-10-2018 IPR000905 Gcp-like domain VF_1712 acfdacad3fa6a228f7a9674bcbbf321b 233 Gene3D G3DSA:3.30.420.40 5 224 1.4E-80 T 10-10-2018 VF_1712 acfdacad3fa6a228f7a9674bcbbf321b 233 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 5 221 3.2E-66 T 10-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 VF_1712 acfdacad3fa6a228f7a9674bcbbf321b 233 SUPERFAMILY SSF53067 110 219 2.46E-29 T 10-10-2018 VF_1712 acfdacad3fa6a228f7a9674bcbbf321b 233 Gene3D G3DSA:3.30.420.40 96 190 1.4E-80 T 10-10-2018 VF_2347 f9c7a9c068050facaf77d62cbdce51a3 273 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 82 242 6.7E-72 T 10-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 VF_2347 f9c7a9c068050facaf77d62cbdce51a3 273 Gene3D G3DSA:1.10.3130.10 1 142 2.7E-50 T 10-10-2018 VF_2347 f9c7a9c068050facaf77d62cbdce51a3 273 SUPERFAMILY SSF51161 8 259 6.15E-61 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_2347 f9c7a9c068050facaf77d62cbdce51a3 273 Pfam PF06426 Serine acetyltransferase, N-terminal 9 112 1.6E-37 T 10-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 VF_2347 f9c7a9c068050facaf77d62cbdce51a3 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 202 230 - T 10-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VF_2347 f9c7a9c068050facaf77d62cbdce51a3 273 SMART SM00971 9 113 5.9E-58 T 10-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 VF_2347 f9c7a9c068050facaf77d62cbdce51a3 273 PIRSF PIRSF000441 8 70 460.0 T 10-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 VF_2347 f9c7a9c068050facaf77d62cbdce51a3 273 PIRSF PIRSF000441 75 267 1.1E-53 T 10-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 VF_2347 f9c7a9c068050facaf77d62cbdce51a3 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 193 226 1.1E-6 T 10-10-2018 IPR001451 Hexapeptide repeat VF_2347 f9c7a9c068050facaf77d62cbdce51a3 273 Gene3D G3DSA:2.160.10.10 143 273 3.3E-36 T 10-10-2018 VF_2397 335f6a6e2214b01b99493d709a0fbe6b 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 10-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 VF_2397 335f6a6e2214b01b99493d709a0fbe6b 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.4E-19 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_2397 335f6a6e2214b01b99493d709a0fbe6b 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.4E-19 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_2397 335f6a6e2214b01b99493d709a0fbe6b 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.4E-19 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_2397 335f6a6e2214b01b99493d709a0fbe6b 90 SMART SM00411 1 90 3.6E-45 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_2397 335f6a6e2214b01b99493d709a0fbe6b 90 Gene3D G3DSA:4.10.520.10 1 90 7.9E-38 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VF_2397 335f6a6e2214b01b99493d709a0fbe6b 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.4E-34 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_2397 335f6a6e2214b01b99493d709a0fbe6b 90 SUPERFAMILY SSF47729 1 90 9.86E-34 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VF_0043 6bd78a08c041777dc91003f5e570a89d 309 SUPERFAMILY SSF103481 52 153 1.09E-11 T 10-10-2018 VF_0043 6bd78a08c041777dc91003f5e570a89d 309 SUPERFAMILY SSF103481 198 301 6.93E-10 T 10-10-2018 VF_0043 6bd78a08c041777dc91003f5e570a89d 309 Pfam PF00892 EamA-like transporter family 18 150 8.5E-16 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_0043 6bd78a08c041777dc91003f5e570a89d 309 Pfam PF00892 EamA-like transporter family 164 295 5.4E-14 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_A0960 92a5e9464c6c3c862922178678125ce5 340 Pfam PF13416 Bacterial extracellular solute-binding protein 6 270 9.2E-11 T 10-10-2018 IPR006059 Bacterial extracellular solute-binding protein VF_A0960 92a5e9464c6c3c862922178678125ce5 340 SUPERFAMILY SSF53850 6 323 2.1E-36 T 10-10-2018 VF_A0960 92a5e9464c6c3c862922178678125ce5 340 Gene3D G3DSA:3.40.190.10 5 294 1.0E-44 T 10-10-2018 VF_A0960 92a5e9464c6c3c862922178678125ce5 340 Gene3D G3DSA:3.40.190.10 81 322 1.0E-44 T 10-10-2018 VF_A0724 2bf9c98b4b12a94233aa016617c0122d 307 Gene3D G3DSA:3.40.190.290 100 306 4.7E-15 T 10-10-2018 VF_A0724 2bf9c98b4b12a94233aa016617c0122d 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 3.6E-12 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0724 2bf9c98b4b12a94233aa016617c0122d 307 SUPERFAMILY SSF53850 97 303 3.98E-9 T 10-10-2018 VF_A0724 2bf9c98b4b12a94233aa016617c0122d 307 Gene3D G3DSA:1.10.10.10 8 91 3.7E-16 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0724 2bf9c98b4b12a94233aa016617c0122d 307 SUPERFAMILY SSF46785 10 95 3.67E-15 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0359 4271ea6a164df0ce7865932e8ca06bc2 546 SMART SM00965 95 143 8.8E-4 T 10-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 VF_0359 4271ea6a164df0ce7865932e8ca06bc2 546 Pfam PF00263 Bacterial type II and III secretion system protein 346 523 2.5E-40 T 10-10-2018 IPR004846 Type II/III secretion system GO:0009306 VF_0359 4271ea6a164df0ce7865932e8ca06bc2 546 Gene3D G3DSA:3.55.50.30 69 153 5.0E-8 T 10-10-2018 VF_0359 4271ea6a164df0ce7865932e8ca06bc2 546 Pfam PF07655 Secretin N-terminal domain 147 240 1.3E-27 T 10-10-2018 IPR011514 Secretin, N-terminal GO:0009297|GO:0019867 VF_0359 4271ea6a164df0ce7865932e8ca06bc2 546 TIGRFAM TIGR02519 pilus_MshL: pilus (MSHA type) biogenesis protein MshL 235 523 5.1E-92 T 10-10-2018 IPR013358 Pilus biogenesis, MshL VF_0359 4271ea6a164df0ce7865932e8ca06bc2 546 PRINTS PR00811 Bacterial general secretion pathway protein D signature 488 506 1.1E-18 T 10-10-2018 IPR001775 GspD/PilQ family VF_0359 4271ea6a164df0ce7865932e8ca06bc2 546 PRINTS PR00811 Bacterial general secretion pathway protein D signature 269 279 1.1E-18 T 10-10-2018 IPR001775 GspD/PilQ family VF_0359 4271ea6a164df0ce7865932e8ca06bc2 546 PRINTS PR00811 Bacterial general secretion pathway protein D signature 511 525 1.1E-18 T 10-10-2018 IPR001775 GspD/PilQ family VF_0359 4271ea6a164df0ce7865932e8ca06bc2 546 PRINTS PR00811 Bacterial general secretion pathway protein D signature 341 365 1.1E-18 T 10-10-2018 IPR001775 GspD/PilQ family VF_0359 4271ea6a164df0ce7865932e8ca06bc2 546 PRINTS PR00811 Bacterial general secretion pathway protein D signature 382 392 1.1E-18 T 10-10-2018 IPR001775 GspD/PilQ family VF_A0673 e8a3a41988914cbfb455e70c850061cd 339 SUPERFAMILY SSF90123 30 316 9.42E-5 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_A0673 e8a3a41988914cbfb455e70c850061cd 339 Pfam PF05992 SbmA/BacA-like family 8 321 4.5E-151 T 10-10-2018 IPR009248 SbmA/BacA-like GO:0015833|GO:0016021|GO:1904680 VF_A0748 3299a4a3fea36bd60abc94e1ccba0561 426 Gene3D G3DSA:3.40.640.10 62 331 2.7E-171 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_A0748 3299a4a3fea36bd60abc94e1ccba0561 426 Gene3D G3DSA:3.90.1150.10 12 416 2.7E-171 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_A0748 3299a4a3fea36bd60abc94e1ccba0561 426 PIRSF PIRSF000521 25 425 9.6E-35 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VF_A0748 3299a4a3fea36bd60abc94e1ccba0561 426 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 2 425 49.718 T 10-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 VF_A0748 3299a4a3fea36bd60abc94e1ccba0561 426 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 14 422 5.5E-180 T 10-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 VF_A0748 3299a4a3fea36bd60abc94e1ccba0561 426 Pfam PF00202 Aminotransferase class-III 28 422 9.1E-129 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VF_A0748 3299a4a3fea36bd60abc94e1ccba0561 426 SUPERFAMILY SSF53383 8 424 3.74E-135 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_A0748 3299a4a3fea36bd60abc94e1ccba0561 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 243 280 - T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VF_0492 68600df810327d54753b20df2e55b34e 292 Pfam PF01136 Peptidase family U32 93 237 1.5E-12 T 10-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VF_2522 00d72bc68d9d904e165be09e1c6df16f 188 ProSitePatterns PS01081 TetR-type HTH domain signature. 20 51 - T 10-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VF_2522 00d72bc68d9d904e165be09e1c6df16f 188 Gene3D G3DSA:1.10.357.10 1 188 2.7E-62 T 10-10-2018 VF_2522 00d72bc68d9d904e165be09e1c6df16f 188 SUPERFAMILY SSF46689 2 74 3.79E-18 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_2522 00d72bc68d9d904e165be09e1c6df16f 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 2.4E-10 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_2522 00d72bc68d9d904e165be09e1c6df16f 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 2.4E-10 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_2522 00d72bc68d9d904e165be09e1c6df16f 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 54 7.9E-17 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_2522 00d72bc68d9d904e165be09e1c6df16f 188 Pfam PF16295 Tetracycline repressor, C-terminal all-alpha domain 57 185 1.8E-8 T 10-10-2018 IPR032551 HTH-type transcriptional repressor, C-terminal VF_1142 7750f7fc019956ecaab199998c085181 183 SUPERFAMILY SSF53474 2 176 1.18E-7 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_1142 7750f7fc019956ecaab199998c085181 183 Gene3D G3DSA:3.40.50.1820 1 181 6.4E-18 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_1142 7750f7fc019956ecaab199998c085181 183 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 177 9.7E-69 T 10-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA VF_1142 7750f7fc019956ecaab199998c085181 183 Hamap MF_01047 UPF0227 protein YcfP [ycfP]. 1 178 48.477 T 10-10-2018 IPR022987 Uncharacterised protein family UPF0227 VF_A1052 143739bb1caaffb9fc5b7a87ba47a12b 495 Pfam PF00916 Sulfate permease family 14 143 1.8E-26 T 10-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 VF_A1052 143739bb1caaffb9fc5b7a87ba47a12b 495 Pfam PF00916 Sulfate permease family 169 345 1.9E-27 T 10-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 VF_A1052 143739bb1caaffb9fc5b7a87ba47a12b 495 Pfam PF01740 STAS domain 378 486 2.7E-10 T 10-10-2018 IPR002645 STAS domain VF_A1052 143739bb1caaffb9fc5b7a87ba47a12b 495 Gene3D G3DSA:3.30.750.24 387 483 2.8E-25 T 10-10-2018 IPR036513 STAS domain superfamily VF_A1052 143739bb1caaffb9fc5b7a87ba47a12b 495 SUPERFAMILY SSF52091 404 484 8.83E-10 T 10-10-2018 IPR036513 STAS domain superfamily VF_A0946 92311b6d2cbddef124f9c17c5240c54a 147 Pfam PF11153 Protein of unknown function (DUF2931) 16 145 3.3E-29 T 10-10-2018 IPR021326 Protein of unknown function DUF2931 VF_0642 16df0f0b1a01fcf803ab5581bc237b69 126 SUPERFAMILY SSF55298 1 125 3.3E-40 T 10-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VF_0642 16df0f0b1a01fcf803ab5581bc237b69 126 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 2 124 2.2E-43 T 10-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 VF_0642 16df0f0b1a01fcf803ab5581bc237b69 126 Gene3D G3DSA:3.30.1330.40 1 126 6.1E-45 T 10-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VF_0642 16df0f0b1a01fcf803ab5581bc237b69 126 Pfam PF01042 Endoribonuclease L-PSP 9 124 2.5E-35 T 10-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 VF_0078 bfc3249ead274d44e9e008f3ba5bf574 181 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 1 175 16.314 T 10-10-2018 IPR007336 Der GTPase activator GO:0005096 VF_0078 bfc3249ead274d44e9e008f3ba5bf574 181 Pfam PF04220 Der GTPase activator (YihI) 17 172 3.0E-47 T 10-10-2018 IPR007336 Der GTPase activator GO:0005096 VF_A1127 6b21f137d0815c1f4358c409d5f17054 87 Pfam PF11747 Killing trait 10 75 3.2E-22 T 10-10-2018 IPR021070 Killing trait, RebB VF_2043 73237b8a1d21d52d4a5f5c784dd95492 377 SUPERFAMILY SSF53850 31 371 8.05E-65 T 10-10-2018 VF_2043 73237b8a1d21d52d4a5f5c784dd95492 377 Gene3D G3DSA:3.40.190.10 40 334 1.3E-80 T 10-10-2018 VF_2043 73237b8a1d21d52d4a5f5c784dd95492 377 Gene3D G3DSA:3.40.190.10 127 365 1.3E-80 T 10-10-2018 VF_2043 73237b8a1d21d52d4a5f5c784dd95492 377 Pfam PF13416 Bacterial extracellular solute-binding protein 39 312 9.7E-34 T 10-10-2018 IPR006059 Bacterial extracellular solute-binding protein VF_2266 c98acba59fe9ef2facbab466aaba4fbe 805 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 649 671 - T 10-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 VF_2266 c98acba59fe9ef2facbab466aaba4fbe 805 Pfam PF00696 Amino acid kinase family 7 274 9.6E-42 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VF_2266 c98acba59fe9ef2facbab466aaba4fbe 805 ProSitePatterns PS00324 Aspartokinase signature. 9 17 - T 10-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_2266 c98acba59fe9ef2facbab466aaba4fbe 805 Gene3D G3DSA:1.20.120.1320 46 139 3.8E-69 T 10-10-2018 VF_2266 c98acba59fe9ef2facbab466aaba4fbe 805 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 459 595 1.1E-12 T 10-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 VF_2266 c98acba59fe9ef2facbab466aaba4fbe 805 PIRSF PIRSF000727 7 805 3.6E-270 T 10-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_2266 c98acba59fe9ef2facbab466aaba4fbe 805 SUPERFAMILY SSF53633 7 293 2.88E-55 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_2266 c98acba59fe9ef2facbab466aaba4fbe 805 SUPERFAMILY SSF55347 603 786 4.71E-45 T 10-10-2018 VF_2266 c98acba59fe9ef2facbab466aaba4fbe 805 Gene3D G3DSA:3.40.1160.10 10 292 3.8E-69 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_2266 c98acba59fe9ef2facbab466aaba4fbe 805 Pfam PF00742 Homoserine dehydrogenase 603 798 1.5E-42 T 10-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 VF_2266 c98acba59fe9ef2facbab466aaba4fbe 805 Gene3D G3DSA:3.30.360.10 614 784 1.5E-101 T 10-10-2018 VF_2266 c98acba59fe9ef2facbab466aaba4fbe 805 Gene3D G3DSA:3.40.50.720 454 802 1.5E-101 T 10-10-2018 VF_2266 c98acba59fe9ef2facbab466aaba4fbe 805 SUPERFAMILY SSF51735 450 625 5.05E-31 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0943 5027f18bae1e8757851830773f0d1117 148 SUPERFAMILY SSF54690 2 146 3.01E-54 T 10-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 VF_0943 5027f18bae1e8757851830773f0d1117 148 Gene3D G3DSA:3.90.1170.40 1 146 2.9E-53 T 10-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 VF_0943 5027f18bae1e8757851830773f0d1117 148 Pfam PF02391 MoaE protein 5 117 6.7E-37 T 10-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 VF_2514 a7dba2e6b318ca35c632a59b51b26580 238 SUPERFAMILY SSF53098 41 227 9.59E-37 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_2514 a7dba2e6b318ca35c632a59b51b26580 238 SMART SM00479 47 228 3.2E-21 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_2514 a7dba2e6b318ca35c632a59b51b26580 238 Gene3D G3DSA:3.30.420.10 44 226 8.1E-35 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_2514 a7dba2e6b318ca35c632a59b51b26580 238 Pfam PF00929 Exonuclease 49 219 6.1E-14 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_1368 4867750ab9ce4e7f775f85aa9a1bc47d 387 SUPERFAMILY SSF53955 217 381 7.04E-37 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_1368 4867750ab9ce4e7f775f85aa9a1bc47d 387 Pfam PF01464 Transglycosylase SLT domain 221 347 3.1E-28 T 10-10-2018 IPR008258 Transglycosylase SLT domain 1 VF_1368 4867750ab9ce4e7f775f85aa9a1bc47d 387 Pfam PF11873 Domain of unknown function (DUF3393) 5 215 1.2E-72 T 10-10-2018 IPR024570 Murein transglycosylase-C, N-terminal VF_1368 4867750ab9ce4e7f775f85aa9a1bc47d 387 Gene3D G3DSA:1.10.530.10 201 381 2.2E-48 T 10-10-2018 VF_1368 4867750ab9ce4e7f775f85aa9a1bc47d 387 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 239 267 - T 10-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 VF_0463 383a4722e26d90b9843900946a04d003 98 Gene3D G3DSA:1.10.10.10 6 98 2.8E-29 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0463 383a4722e26d90b9843900946a04d003 98 SMART SM00418 15 93 1.6E-28 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_0463 383a4722e26d90b9843900946a04d003 98 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 1.9E-12 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_0463 383a4722e26d90b9843900946a04d003 98 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 36 47 1.9E-12 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_0463 383a4722e26d90b9843900946a04d003 98 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 1.9E-12 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_0463 383a4722e26d90b9843900946a04d003 98 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 1.9E-12 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_0463 383a4722e26d90b9843900946a04d003 98 SUPERFAMILY SSF46785 4 97 2.85E-27 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0463 383a4722e26d90b9843900946a04d003 98 Pfam PF01022 Bacterial regulatory protein, arsR family 23 67 1.3E-15 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_1338 d3f9f1ebe4b11c562696cd07d9042e20 209 PIRSF PIRSF006324 1 208 1.7E-61 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_1338 d3f9f1ebe4b11c562696cd07d9042e20 209 Pfam PF01810 LysE type translocator 15 205 1.9E-37 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_A0332 289174cd007b33b7ff6a59a6d6e1c38a 711 SUPERFAMILY SSF56935 24 711 9.57E-109 T 10-10-2018 VF_A0332 289174cd007b33b7ff6a59a6d6e1c38a 711 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 29 711 2.6E-117 T 10-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 VF_A0332 289174cd007b33b7ff6a59a6d6e1c38a 711 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 28 711 2.3E-125 T 10-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 VF_A0332 289174cd007b33b7ff6a59a6d6e1c38a 711 Pfam PF07715 TonB-dependent Receptor Plug Domain 43 151 2.2E-22 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain VF_A0332 289174cd007b33b7ff6a59a6d6e1c38a 711 Gene3D G3DSA:2.40.170.20 166 711 3.1E-78 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VF_A0332 289174cd007b33b7ff6a59a6d6e1c38a 711 Pfam PF00593 TonB dependent receptor 276 709 2.4E-53 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VF_A0332 289174cd007b33b7ff6a59a6d6e1c38a 711 Gene3D G3DSA:2.170.130.10 28 156 1.8E-27 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VF_A0332 289174cd007b33b7ff6a59a6d6e1c38a 711 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 694 711 - T 10-10-2018 IPR010917 TonB-dependent receptor, conserved site VF_1998 e90d8a55c869dc9b709e61061d0bc82f 555 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 553 1.4E-176 T 10-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 VF_1998 e90d8a55c869dc9b709e61061d0bc82f 555 SUPERFAMILY SSF52540 1 510 5.28E-64 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1998 e90d8a55c869dc9b709e61061d0bc82f 555 Gene3D G3DSA:3.40.50.300 265 554 2.5E-53 T 10-10-2018 VF_1998 e90d8a55c869dc9b709e61061d0bc82f 555 Gene3D G3DSA:3.40.50.300 1 264 3.8E-44 T 10-10-2018 VF_1998 e90d8a55c869dc9b709e61061d0bc82f 555 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 500 8.9E-17 T 10-10-2018 IPR003395 RecF/RecN/SMC, N-terminal VF_1998 e90d8a55c869dc9b709e61061d0bc82f 555 PIRSF PIRSF003128 1 555 1.0E-161 T 10-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 VF_1806 bc37594240732fe12ec4c00f69ffedc3 310 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 204 210 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VF_1806 bc37594240732fe12ec4c00f69ffedc3 310 Pfam PF05175 Methyltransferase small domain 134 216 1.8E-17 T 10-10-2018 IPR007848 Methyltransferase small domain GO:0008168 VF_1806 bc37594240732fe12ec4c00f69ffedc3 310 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 13 295 7.0E-136 T 10-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 VF_1806 bc37594240732fe12ec4c00f69ffedc3 310 Gene3D G3DSA:3.40.50.150 103 283 2.2E-46 T 10-10-2018 VF_1806 bc37594240732fe12ec4c00f69ffedc3 310 SUPERFAMILY SSF53335 16 294 2.52E-48 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_1806 bc37594240732fe12ec4c00f69ffedc3 310 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 6 300 53.153 T 10-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 VF_1806 bc37594240732fe12ec4c00f69ffedc3 310 PIRSF PIRSF037167 2 307 1.1E-146 T 10-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 VF_1806 bc37594240732fe12ec4c00f69ffedc3 310 Gene3D G3DSA:1.10.8.10 15 102 4.1E-6 T 10-10-2018 VF_1806 bc37594240732fe12ec4c00f69ffedc3 310 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 298 3.9E-96 T 10-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 VF_0331 161b7ff614bb2e1e1f07403e0aa681a1 192 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 26 188 38.242 T 10-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VF_0331 161b7ff614bb2e1e1f07403e0aa681a1 192 Gene3D G3DSA:3.30.1060.10 2 192 3.0E-81 T 10-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VF_0331 161b7ff614bb2e1e1f07403e0aa681a1 192 Pfam PF01625 Peptide methionine sulfoxide reductase 28 182 4.1E-66 T 10-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VF_0331 161b7ff614bb2e1e1f07403e0aa681a1 192 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 27 182 4.1E-65 T 10-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VF_0331 161b7ff614bb2e1e1f07403e0aa681a1 192 SUPERFAMILY SSF55068 10 190 1.16E-77 T 10-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VF_A0702 444d7deeea4b8d0d761e86ab3093cecb 126 Gene3D G3DSA:2.40.50.100 1 126 1.6E-48 T 10-10-2018 VF_A0702 444d7deeea4b8d0d761e86ab3093cecb 126 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 46 75 - T 10-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VF_A0702 444d7deeea4b8d0d761e86ab3093cecb 126 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 125 1.3E-49 T 10-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 VF_A0702 444d7deeea4b8d0d761e86ab3093cecb 126 Pfam PF01597 Glycine cleavage H-protein 5 125 1.4E-46 T 10-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate VF_A0702 444d7deeea4b8d0d761e86ab3093cecb 126 SUPERFAMILY SSF51230 3 125 3.01E-43 T 10-10-2018 IPR011053 Single hybrid motif VF_A0702 444d7deeea4b8d0d761e86ab3093cecb 126 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 2 124 40.122 T 10-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 VF_0288 8ee80ccbcfff7a571b65e920b6741bf4 437 Hamap MF_01183 Chaperone SurA [surA]. 11 429 32.076 T 10-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 VF_0288 8ee80ccbcfff7a571b65e920b6741bf4 437 Pfam PF09312 SurA N-terminal domain 27 144 8.6E-46 T 10-10-2018 IPR015391 SurA N-terminal VF_0288 8ee80ccbcfff7a571b65e920b6741bf4 437 Gene3D G3DSA:3.10.50.40 284 386 7.6E-76 T 10-10-2018 VF_0288 8ee80ccbcfff7a571b65e920b6741bf4 437 SUPERFAMILY SSF109998 27 203 8.04E-38 T 10-10-2018 IPR027304 Trigger factor/SurA domain superfamily VF_0288 8ee80ccbcfff7a571b65e920b6741bf4 437 Pfam PF13616 PPIC-type PPIASE domain 165 275 6.1E-24 T 10-10-2018 VF_0288 8ee80ccbcfff7a571b65e920b6741bf4 437 Pfam PF13616 PPIC-type PPIASE domain 282 384 3.2E-23 T 10-10-2018 VF_0288 8ee80ccbcfff7a571b65e920b6741bf4 437 SUPERFAMILY SSF54534 284 386 9.81E-28 T 10-10-2018 VF_0288 8ee80ccbcfff7a571b65e920b6741bf4 437 Gene3D G3DSA:1.10.4030.10 23 150 1.4E-36 T 10-10-2018 VF_0288 8ee80ccbcfff7a571b65e920b6741bf4 437 SUPERFAMILY SSF54534 175 277 1.96E-26 T 10-10-2018 VF_0288 8ee80ccbcfff7a571b65e920b6741bf4 437 Gene3D G3DSA:3.10.50.40 177 387 7.6E-76 T 10-10-2018 VF_2308 89b4cb0e9fbd03c8e70b0999751119b3 876 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 534 546 - T 10-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VF_2308 89b4cb0e9fbd03c8e70b0999751119b3 876 Pfam PF00311 Phosphoenolpyruvate carboxylase 129 876 5.5E-287 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VF_2308 89b4cb0e9fbd03c8e70b0999751119b3 876 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 134 145 - T 10-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VF_2308 89b4cb0e9fbd03c8e70b0999751119b3 876 SUPERFAMILY SSF51621 6 876 0.0 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VF_2308 89b4cb0e9fbd03c8e70b0999751119b3 876 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 876 17.855 T 10-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VF_2308 89b4cb0e9fbd03c8e70b0999751119b3 876 Gene3D G3DSA:1.20.1440.90 303 385 1.1E-21 T 10-10-2018 VF_2308 89b4cb0e9fbd03c8e70b0999751119b3 876 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 245 260 1.9E-66 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VF_2308 89b4cb0e9fbd03c8e70b0999751119b3 876 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 383 403 1.9E-66 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VF_2308 89b4cb0e9fbd03c8e70b0999751119b3 876 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 133 146 1.9E-66 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VF_2308 89b4cb0e9fbd03c8e70b0999751119b3 876 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 186 202 1.9E-66 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VF_2308 89b4cb0e9fbd03c8e70b0999751119b3 876 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 532 552 1.9E-66 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VF_2308 89b4cb0e9fbd03c8e70b0999751119b3 876 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 574 603 1.9E-66 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VF_2308 89b4cb0e9fbd03c8e70b0999751119b3 876 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 706 732 1.9E-66 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VF_1166 d798ceeb57adf48da474fbb105ae8978 325 Gene3D G3DSA:3.60.10.10 9 317 2.9E-26 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VF_1166 d798ceeb57adf48da474fbb105ae8978 325 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 33 293 3.3E-11 T 10-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase VF_1166 d798ceeb57adf48da474fbb105ae8978 325 SUPERFAMILY SSF56219 16 319 6.41E-30 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VF_0956 0939e50ca2049db160d2e71a4cc0a920 100 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 20 97 3.2E-24 T 10-10-2018 IPR011846 Cyd operon protein YbgE VF_0194 b4b0f7df67202e48899639f957c5f7a6 414 Pfam PF13692 Glycosyl transferases group 1 232 374 3.0E-6 T 10-10-2018 VF_0194 b4b0f7df67202e48899639f957c5f7a6 414 Gene3D G3DSA:3.40.50.2000 14 213 1.9E-7 T 10-10-2018 VF_0194 b4b0f7df67202e48899639f957c5f7a6 414 SUPERFAMILY SSF53756 31 373 4.4E-13 T 10-10-2018 VF_0194 b4b0f7df67202e48899639f957c5f7a6 414 Gene3D G3DSA:3.40.50.2000 214 385 2.6E-7 T 10-10-2018 VF_A0627 32fbf31fed52394015aa16f96d327d0d 182 Gene3D G3DSA:3.90.1140.10 45 180 3.2E-9 T 10-10-2018 VF_A0627 32fbf31fed52394015aa16f96d327d0d 182 SUPERFAMILY SSF55144 36 179 2.38E-5 T 10-10-2018 IPR009097 Cyclic phosphodiesterase VF_2369 85dc04ba7601bee99f9211d2eacc6bd4 186 SUPERFAMILY SSF51161 7 137 3.76E-30 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_2369 85dc04ba7601bee99f9211d2eacc6bd4 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 79 112 0.0017 T 10-10-2018 IPR001451 Hexapeptide repeat VF_2369 85dc04ba7601bee99f9211d2eacc6bd4 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 15 44 5.2E-6 T 10-10-2018 IPR001451 Hexapeptide repeat VF_2369 85dc04ba7601bee99f9211d2eacc6bd4 186 Gene3D G3DSA:2.160.10.10 1 183 6.7E-48 T 10-10-2018 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 Pfam PF10509 Galactokinase galactose-binding signature 18 59 9.4E-21 T 10-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 122 133 - T 10-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 Pfam PF00288 GHMP kinases N terminal domain 115 182 1.2E-11 T 10-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 SUPERFAMILY SSF54211 2 204 2.58E-66 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_A0355 c09d9dfc2390dd752384accbd9304370 384 TIGRFAM TIGR00131 gal_kin: galactokinase 6 381 1.5E-147 T 10-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 ProSitePatterns PS00106 Galactokinase signature. 28 39 - T 10-10-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 PIRSF PIRSF000530 1 384 3.8E-127 T 10-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 Gene3D G3DSA:3.30.70.890 203 358 4.4E-133 T 10-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VF_A0355 c09d9dfc2390dd752384accbd9304370 384 PRINTS PR00473 Galactokinase signature 113 131 5.8E-29 T 10-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 PRINTS PR00473 Galactokinase signature 93 104 5.8E-29 T 10-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 PRINTS PR00473 Galactokinase signature 264 278 5.8E-29 T 10-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 PRINTS PR00473 Galactokinase signature 28 46 5.8E-29 T 10-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 Pfam PF08544 GHMP kinases C terminal 281 362 2.6E-8 T 10-10-2018 IPR013750 GHMP kinase, C-terminal domain VF_A0355 c09d9dfc2390dd752384accbd9304370 384 SUPERFAMILY SSF55060 205 382 1.18E-51 T 10-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VF_A0355 c09d9dfc2390dd752384accbd9304370 384 Gene3D G3DSA:3.30.230.10 23 202 4.4E-133 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_A0355 c09d9dfc2390dd752384accbd9304370 384 Hamap MF_00246 Galactokinase [galK]. 26 382 44.05 T 10-10-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 PRINTS PR00959 Mevalonate kinase family signature 26 50 4.2E-44 T 10-10-2018 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 PRINTS PR00959 Mevalonate kinase family signature 120 142 4.2E-44 T 10-10-2018 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 PRINTS PR00959 Mevalonate kinase family signature 329 346 4.2E-44 T 10-10-2018 VF_A0355 c09d9dfc2390dd752384accbd9304370 384 PRINTS PR00959 Mevalonate kinase family signature 163 182 4.2E-44 T 10-10-2018 VF_A0924 394213fcf96718be398e5c3b6984f215 190 Gene3D G3DSA:3.40.630.30 8 190 9.5E-51 T 10-10-2018 VF_A0924 394213fcf96718be398e5c3b6984f215 190 SUPERFAMILY SSF55729 12 185 7.21E-39 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A0924 394213fcf96718be398e5c3b6984f215 190 PRINTS PR01549 Autoinducer synthesis protein signature 118 139 2.9E-35 T 10-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VF_A0924 394213fcf96718be398e5c3b6984f215 190 PRINTS PR01549 Autoinducer synthesis protein signature 61 79 2.9E-35 T 10-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VF_A0924 394213fcf96718be398e5c3b6984f215 190 PRINTS PR01549 Autoinducer synthesis protein signature 17 36 2.9E-35 T 10-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VF_A0924 394213fcf96718be398e5c3b6984f215 190 PRINTS PR01549 Autoinducer synthesis protein signature 37 59 2.9E-35 T 10-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VF_A0924 394213fcf96718be398e5c3b6984f215 190 PRINTS PR01549 Autoinducer synthesis protein signature 164 181 2.9E-35 T 10-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VF_A0924 394213fcf96718be398e5c3b6984f215 190 PRINTS PR01549 Autoinducer synthesis protein signature 140 161 2.9E-35 T 10-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VF_A0924 394213fcf96718be398e5c3b6984f215 190 PRINTS PR01549 Autoinducer synthesis protein signature 94 106 2.9E-35 T 10-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VF_A0924 394213fcf96718be398e5c3b6984f215 190 Pfam PF00765 Autoinducer synthase 16 188 2.7E-32 T 10-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VF_A0924 394213fcf96718be398e5c3b6984f215 190 ProSitePatterns PS00949 Autoinducer synthase family signature. 21 46 - T 10-10-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VF_2147 bc9e93275507917593dda5e14ab00bb8 801 Gene3D G3DSA:1.50.10.10 311 721 4.7E-133 T 10-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 VF_2147 bc9e93275507917593dda5e14ab00bb8 801 SUPERFAMILY SSF48208 273 801 1.29E-110 T 10-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 VF_2147 bc9e93275507917593dda5e14ab00bb8 801 Gene3D G3DSA:2.70.98.40 1 302 6.2E-118 T 10-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily VF_2147 bc9e93275507917593dda5e14ab00bb8 801 SMART SM01068 1 63 1.7E-19 T 10-10-2018 IPR009342 Putative carbohydrate binding domain VF_2147 bc9e93275507917593dda5e14ab00bb8 801 SUPERFAMILY SSF74650 1 269 8.47E-84 T 10-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VF_2147 bc9e93275507917593dda5e14ab00bb8 801 Gene3D G3DSA:2.60.420.10 722 801 8.3E-31 T 10-10-2018 VF_2147 bc9e93275507917593dda5e14ab00bb8 801 Pfam PF06165 Glycosyltransferase family 36 21 267 7.2E-86 T 10-10-2018 IPR010383 Glycosyl hydrolase 94 VF_2147 bc9e93275507917593dda5e14ab00bb8 801 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 296 728 2.3E-212 T 10-10-2018 IPR033432 Glycosyl hydrolase 36, catalytic domain VF_A0864 1105f22e81bdbc26a424678692fdcba9 343 Pfam PF00175 Oxidoreductase NAD-binding domain 120 223 1.4E-10 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VF_A0864 1105f22e81bdbc26a424678692fdcba9 343 SUPERFAMILY SSF52343 113 243 2.49E-31 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_A0864 1105f22e81bdbc26a424678692fdcba9 343 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 270 334 1.9E-12 T 10-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VF_A0864 1105f22e81bdbc26a424678692fdcba9 343 Gene3D G3DSA:3.40.50.80 110 246 1.9E-28 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_A0864 1105f22e81bdbc26a424678692fdcba9 343 Gene3D G3DSA:3.10.20.30 257 343 1.7E-21 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_A0864 1105f22e81bdbc26a424678692fdcba9 343 SUPERFAMILY SSF63380 3 108 1.7E-27 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VF_A0864 1105f22e81bdbc26a424678692fdcba9 343 SUPERFAMILY SSF54292 232 342 2.1E-23 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VF_A0864 1105f22e81bdbc26a424678692fdcba9 343 Pfam PF00970 Oxidoreductase FAD-binding domain 17 107 6.2E-16 T 10-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 VF_A0864 1105f22e81bdbc26a424678692fdcba9 343 Gene3D G3DSA:2.40.30.10 8 108 2.2E-27 T 10-10-2018 VF_A0864 1105f22e81bdbc26a424678692fdcba9 343 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 292 300 - T 10-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 VF_2474 cd8029c541307a97867f44b59ed08a1e 673 Gene3D G3DSA:3.30.1370.120 184 254 4.0E-21 T 10-10-2018 IPR038591 NolW-like superfamily VF_2474 cd8029c541307a97867f44b59ed08a1e 673 Gene3D G3DSA:3.30.1370.120 15 181 1.1E-52 T 10-10-2018 IPR038591 NolW-like superfamily VF_2474 cd8029c541307a97867f44b59ed08a1e 673 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 552 585 - T 10-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 VF_2474 cd8029c541307a97867f44b59ed08a1e 673 Pfam PF03958 Bacterial type II/III secretion system short domain 121 182 2.6E-8 T 10-10-2018 IPR005644 NolW-like VF_2474 cd8029c541307a97867f44b59ed08a1e 673 Pfam PF03958 Bacterial type II/III secretion system short domain 186 254 1.6E-15 T 10-10-2018 IPR005644 NolW-like VF_2474 cd8029c541307a97867f44b59ed08a1e 673 Pfam PF03958 Bacterial type II/III secretion system short domain 262 339 1.6E-19 T 10-10-2018 IPR005644 NolW-like VF_2474 cd8029c541307a97867f44b59ed08a1e 673 PRINTS PR00811 Bacterial general secretion pathway protein D signature 571 589 2.1E-37 T 10-10-2018 IPR001775 GspD/PilQ family VF_2474 cd8029c541307a97867f44b59ed08a1e 673 PRINTS PR00811 Bacterial general secretion pathway protein D signature 441 465 2.1E-37 T 10-10-2018 IPR001775 GspD/PilQ family VF_2474 cd8029c541307a97867f44b59ed08a1e 673 PRINTS PR00811 Bacterial general secretion pathway protein D signature 594 608 2.1E-37 T 10-10-2018 IPR001775 GspD/PilQ family VF_2474 cd8029c541307a97867f44b59ed08a1e 673 PRINTS PR00811 Bacterial general secretion pathway protein D signature 339 349 2.1E-37 T 10-10-2018 IPR001775 GspD/PilQ family VF_2474 cd8029c541307a97867f44b59ed08a1e 673 PRINTS PR00811 Bacterial general secretion pathway protein D signature 476 486 2.1E-37 T 10-10-2018 IPR001775 GspD/PilQ family VF_2474 cd8029c541307a97867f44b59ed08a1e 673 Pfam PF00263 Bacterial type II and III secretion system protein 445 607 1.2E-51 T 10-10-2018 IPR004846 Type II/III secretion system GO:0009306 VF_2474 cd8029c541307a97867f44b59ed08a1e 673 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 25 616 1.0E-161 T 10-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 VF_2474 cd8029c541307a97867f44b59ed08a1e 673 PRINTS PR01032 Gene IV protein signature 466 489 5.7E-12 T 10-10-2018 VF_2474 cd8029c541307a97867f44b59ed08a1e 673 PRINTS PR01032 Gene IV protein signature 587 609 5.7E-12 T 10-10-2018 VF_2474 cd8029c541307a97867f44b59ed08a1e 673 PRINTS PR01032 Gene IV protein signature 534 562 5.7E-12 T 10-10-2018 VF_2474 cd8029c541307a97867f44b59ed08a1e 673 Gene3D G3DSA:3.30.1370.120 255 340 4.0E-18 T 10-10-2018 IPR038591 NolW-like superfamily VF_1645 22969f17cdab116582cc74e5e65244a3 371 SUPERFAMILY SSF55347 133 354 2.77E-78 T 10-10-2018 VF_1645 22969f17cdab116582cc74e5e65244a3 371 SMART SM00859 2 121 3.7E-26 T 10-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VF_1645 22969f17cdab116582cc74e5e65244a3 371 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 2 120 2.1E-22 T 10-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VF_1645 22969f17cdab116582cc74e5e65244a3 371 Gene3D G3DSA:3.30.360.10 134 350 3.6E-147 T 10-10-2018 VF_1645 22969f17cdab116582cc74e5e65244a3 371 SUPERFAMILY SSF51735 1 146 2.69E-50 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1645 22969f17cdab116582cc74e5e65244a3 371 PIRSF PIRSF000148 1 371 5.4E-66 T 10-10-2018 VF_1645 22969f17cdab116582cc74e5e65244a3 371 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 367 32.267 T 10-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_1645 22969f17cdab116582cc74e5e65244a3 371 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 143 353 3.9E-58 T 10-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VF_1645 22969f17cdab116582cc74e5e65244a3 371 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 1 366 6.4E-189 T 10-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_1645 22969f17cdab116582cc74e5e65244a3 371 Gene3D G3DSA:3.40.50.720 3 356 3.6E-147 T 10-10-2018 VF_1645 22969f17cdab116582cc74e5e65244a3 371 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 261 275 - T 10-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VF_0478 0e9aa7bcae8d8239b1d815c606309cb6 209 Gene3D G3DSA:3.40.50.150 30 209 4.6E-60 T 10-10-2018 VF_0478 0e9aa7bcae8d8239b1d815c606309cb6 209 PIRSF PIRSF005461 1 209 7.8E-80 T 10-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 VF_0478 0e9aa7bcae8d8239b1d815c606309cb6 209 SUPERFAMILY SSF53335 30 209 3.68E-46 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_0478 0e9aa7bcae8d8239b1d815c606309cb6 209 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 15 208 28.032 T 10-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 VF_0478 0e9aa7bcae8d8239b1d815c606309cb6 209 Pfam PF01728 FtsJ-like methyltransferase 31 207 3.8E-57 T 10-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 VF_1673 92180af0a0cf18a6c03f981eca8efb6d 404 Gene3D G3DSA:3.90.1150.10 21 398 2.3E-144 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_1673 92180af0a0cf18a6c03f981eca8efb6d 404 Gene3D G3DSA:3.40.640.10 53 294 2.3E-144 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_1673 92180af0a0cf18a6c03f981eca8efb6d 404 Pfam PF00155 Aminotransferase class I and II 59 387 1.2E-50 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VF_1673 92180af0a0cf18a6c03f981eca8efb6d 404 SUPERFAMILY SSF53383 6 401 6.59E-96 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 SMART SM00260 587 727 6.0E-32 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 Pfam PF01627 Hpt domain 8 99 1.1E-16 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 347 407 6.1E-13 T 10-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 455 594 3.5E-16 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 SUPERFAMILY SSF55874 410 593 2.75E-38 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 Gene3D G3DSA:1.10.287.560 347 407 6.4E-20 T 10-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 Gene3D G3DSA:3.30.565.10 408 594 3.1E-54 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 SUPERFAMILY SSF50341 594 727 9.55E-28 T 10-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 Pfam PF01584 CheW-like domain 601 729 2.4E-19 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 Gene3D G3DSA:2.30.30.40 595 723 4.8E-33 T 10-10-2018 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 SMART SM00073 6 103 5.9E-19 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 511 6.6E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 PRINTS PR00344 Bacterial sensor protein C-terminal signature 539 549 6.6E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 PRINTS PR00344 Bacterial sensor protein C-terminal signature 555 573 6.6E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 PRINTS PR00344 Bacterial sensor protein C-terminal signature 579 592 6.6E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 Gene3D G3DSA:2.40.50.180 618 682 4.8E-33 T 10-10-2018 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 Gene3D G3DSA:1.20.120.160 2 144 7.6E-36 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 SUPERFAMILY SSF47384 348 408 2.2E-14 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 SUPERFAMILY SSF47226 6 127 3.66E-31 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 SMART SM00387 452 595 8.8E-22 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1831 4cc69e4d19b9e2d4a28ada8c7e669810 735 SMART SM01231 347 407 3.2E-18 T 10-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 VF_A0435 e37563a416189b085f500fdc763831cb 449 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 345 431 9.9E-16 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0435 e37563a416189b085f500fdc763831cb 449 Gene3D G3DSA:3.30.565.10 296 446 1.4E-25 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0435 e37563a416189b085f500fdc763831cb 449 Gene3D G3DSA:1.10.287.130 180 295 8.3E-13 T 10-10-2018 VF_A0435 e37563a416189b085f500fdc763831cb 449 SMART SM00388 229 295 0.0019 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0435 e37563a416189b085f500fdc763831cb 449 SUPERFAMILY SSF47384 212 295 8.83E-13 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_A0435 e37563a416189b085f500fdc763831cb 449 SUPERFAMILY SSF55874 284 433 7.73E-32 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0435 e37563a416189b085f500fdc763831cb 449 SMART SM00387 340 445 1.7E-25 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0435 e37563a416189b085f500fdc763831cb 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 387 1.3E-5 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0435 e37563a416189b085f500fdc763831cb 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 424 1.3E-5 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0624 a2d51224547dee7e0cf6d846f1150200 234 SUPERFAMILY SSF53681 104 215 7.85E-32 T 10-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_A0624 a2d51224547dee7e0cf6d846f1150200 234 Gene3D G3DSA:3.40.50.1860 104 215 4.0E-84 T 10-10-2018 VF_A0624 a2d51224547dee7e0cf6d846f1150200 234 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 230 3.5E-72 T 10-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 VF_A0624 a2d51224547dee7e0cf6d846f1150200 234 Gene3D G3DSA:3.40.50.1860 4 223 4.0E-84 T 10-10-2018 VF_A0624 a2d51224547dee7e0cf6d846f1150200 234 SUPERFAMILY SSF53681 1 113 1.33E-35 T 10-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_A0624 a2d51224547dee7e0cf6d846f1150200 234 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 224 2.3E-60 T 10-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VF_0292 eee5fdfbb4bc8dfed6b2d705e4a72871 200 SUPERFAMILY SSF52016 1 197 1.82E-60 T 10-10-2018 VF_0292 eee5fdfbb4bc8dfed6b2d705e4a72871 200 Pfam PF00694 Aconitase C-terminal domain 1 125 1.6E-38 T 10-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 VF_0292 eee5fdfbb4bc8dfed6b2d705e4a72871 200 Gene3D G3DSA:3.20.19.10 1 180 5.8E-76 T 10-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 VF_0292 eee5fdfbb4bc8dfed6b2d705e4a72871 200 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 199 44.114 T 10-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 VF_0292 eee5fdfbb4bc8dfed6b2d705e4a72871 200 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 188 6.7E-97 T 10-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 VF_0689 f4b6dd0fdf6f8d9a7125bf7988d53769 350 Gene3D G3DSA:1.10.3720.10 136 342 5.9E-18 T 10-10-2018 IPR035906 MetI-like superfamily VF_0689 f4b6dd0fdf6f8d9a7125bf7988d53769 350 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 164 344 1.1E-28 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_0689 f4b6dd0fdf6f8d9a7125bf7988d53769 350 SUPERFAMILY SSF161098 141 328 8.11E-21 T 10-10-2018 IPR035906 MetI-like superfamily VF_1752 f43c5399a29066036838982ae727d645 215 PRINTS PR00988 Uridine kinase signature 180 193 4.9E-36 T 10-10-2018 VF_1752 f43c5399a29066036838982ae727d645 215 PRINTS PR00988 Uridine kinase signature 88 103 4.9E-36 T 10-10-2018 VF_1752 f43c5399a29066036838982ae727d645 215 PRINTS PR00988 Uridine kinase signature 9 26 4.9E-36 T 10-10-2018 VF_1752 f43c5399a29066036838982ae727d645 215 PRINTS PR00988 Uridine kinase signature 158 169 4.9E-36 T 10-10-2018 VF_1752 f43c5399a29066036838982ae727d645 215 PRINTS PR00988 Uridine kinase signature 43 54 4.9E-36 T 10-10-2018 VF_1752 f43c5399a29066036838982ae727d645 215 PRINTS PR00988 Uridine kinase signature 144 154 4.9E-36 T 10-10-2018 VF_1752 f43c5399a29066036838982ae727d645 215 SUPERFAMILY SSF52540 10 206 2.34E-47 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1752 f43c5399a29066036838982ae727d645 215 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 11 200 2.0E-41 T 10-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 VF_1752 f43c5399a29066036838982ae727d645 215 TIGRFAM TIGR00235 udk: uridine kinase 6 213 3.6E-87 T 10-10-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 VF_1752 f43c5399a29066036838982ae727d645 215 Hamap MF_00551 Uridine kinase [udk]. 6 214 38.752 T 10-10-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 VF_1752 f43c5399a29066036838982ae727d645 215 Gene3D G3DSA:3.40.50.300 9 215 6.0E-60 T 10-10-2018 VF_0068 eadbb979859db923c9ecd426e386c762 733 Gene3D G3DSA:1.10.486.10 382 538 6.8E-131 T 10-10-2018 VF_0068 eadbb979859db923c9ecd426e386c762 733 Gene3D G3DSA:3.40.50.300 10 272 1.6E-98 T 10-10-2018 VF_0068 eadbb979859db923c9ecd426e386c762 733 Gene3D G3DSA:3.40.50.300 281 636 6.8E-131 T 10-10-2018 VF_0068 eadbb979859db923c9ecd426e386c762 733 Pfam PF13361 UvrD-like helicase C-terminal domain 277 616 1.1E-76 T 10-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 VF_0068 eadbb979859db923c9ecd426e386c762 733 SUPERFAMILY SSF52540 7 642 7.48E-178 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0068 eadbb979859db923c9ecd426e386c762 733 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 271 1.4E-75 T 10-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 VF_0068 eadbb979859db923c9ecd426e386c762 733 Gene3D G3DSA:1.10.10.160 114 187 1.6E-98 T 10-10-2018 IPR013986 DExx box DNA helicase domain superfamily VF_0068 eadbb979859db923c9ecd426e386c762 733 TIGRFAM TIGR01075 uvrD: DNA helicase II 6 731 0.0 T 10-10-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 VF_0772 7984ff38d9276972542abf8c4eaac4f4 284 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 14 278 48.029 T 10-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VF_0772 7984ff38d9276972542abf8c4eaac4f4 284 Pfam PF00793 DAHP synthetase I family 11 275 3.7E-70 T 10-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VF_0772 7984ff38d9276972542abf8c4eaac4f4 284 SUPERFAMILY SSF51569 4 280 3.48E-104 T 10-10-2018 VF_0772 7984ff38d9276972542abf8c4eaac4f4 284 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 19 276 1.4E-115 T 10-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VF_0772 7984ff38d9276972542abf8c4eaac4f4 284 Gene3D G3DSA:3.20.20.70 1 284 1.1E-101 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1807 325da15cc4294fd5116081f6f5d358cc 177 SMART SM00463 95 173 9.1E-21 T 10-10-2018 IPR002625 Smr domain VF_1807 325da15cc4294fd5116081f6f5d358cc 177 Gene3D G3DSA:3.30.1370.110 49 175 2.2E-28 T 10-10-2018 VF_1807 325da15cc4294fd5116081f6f5d358cc 177 SUPERFAMILY SSF160443 96 172 6.54E-12 T 10-10-2018 IPR036063 Smr domain superfamily VF_1807 325da15cc4294fd5116081f6f5d358cc 177 Hamap MF_01042 UPF0115 protein YfcN [yfcN]. 1 174 38.051 T 10-10-2018 IPR022990 Uncharacterised protein family UPF0115 VF_1807 325da15cc4294fd5116081f6f5d358cc 177 Pfam PF01713 Smr domain 98 172 3.6E-19 T 10-10-2018 IPR002625 Smr domain VF_0403 5de21f2d83c8d55724c7a62f26b39217 181 Hamap MF_00202 Isopentenyl-diphosphate Delta-isomerase [idi]. 3 181 32.461 T 10-10-2018 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: R-HSA-191273 VF_0403 5de21f2d83c8d55724c7a62f26b39217 181 SUPERFAMILY SSF55811 3 175 1.49E-39 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VF_0403 5de21f2d83c8d55724c7a62f26b39217 181 Pfam PF00293 NUDIX domain 29 160 1.3E-14 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VF_0403 5de21f2d83c8d55724c7a62f26b39217 181 Gene3D G3DSA:3.90.79.10 1 181 7.5E-53 T 10-10-2018 VF_0403 5de21f2d83c8d55724c7a62f26b39217 181 PIRSF PIRSF018427 1 180 1.2E-44 T 10-10-2018 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: R-HSA-191273 VF_A0550 992de5a0e678e82248010b3ba62d58a7 703 TIGRFAM TIGR04456 LruC_dom: LruC domain 422 690 8.3E-63 T 10-10-2018 IPR031025 LruC domain VF_A0550 992de5a0e678e82248010b3ba62d58a7 703 Pfam PF16130 Domain of unknown function (DUF4842) 455 690 7.4E-53 T 10-10-2018 IPR032295 Domain of unknown function DUF4842 VF_0024 a5531995d6cb36488d68d4aa95191a3e 409 SUPERFAMILY SSF53901 22 281 1.34E-80 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0024 a5531995d6cb36488d68d4aa95191a3e 409 Pfam PF00108 Thiolase, N-terminal domain 26 276 1.3E-86 T 10-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 VF_0024 a5531995d6cb36488d68d4aa95191a3e 409 PIRSF PIRSF000429 20 409 1.6E-135 T 10-10-2018 IPR002155 Thiolase GO:0016747 VF_0024 a5531995d6cb36488d68d4aa95191a3e 409 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 25 409 2.9E-227 T 10-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 VF_0024 a5531995d6cb36488d68d4aa95191a3e 409 Gene3D G3DSA:3.40.47.10 26 289 1.1E-156 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0024 a5531995d6cb36488d68d4aa95191a3e 409 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 28 407 8.8E-144 T 10-10-2018 IPR002155 Thiolase GO:0016747 VF_0024 a5531995d6cb36488d68d4aa95191a3e 409 ProSitePatterns PS00099 Thiolases active site. 390 403 - T 10-10-2018 IPR020610 Thiolase, active site GO:0016747 VF_0024 a5531995d6cb36488d68d4aa95191a3e 409 Pfam PF02803 Thiolase, C-terminal domain 284 408 1.9E-49 T 10-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 VF_0024 a5531995d6cb36488d68d4aa95191a3e 409 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 109 127 - T 10-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 VF_0024 a5531995d6cb36488d68d4aa95191a3e 409 SUPERFAMILY SSF53901 285 408 1.35E-43 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0024 a5531995d6cb36488d68d4aa95191a3e 409 Gene3D G3DSA:3.40.47.10 149 403 1.1E-156 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 VF_0024 a5531995d6cb36488d68d4aa95191a3e 409 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 23 409 59.805 T 10-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 VF_0024 a5531995d6cb36488d68d4aa95191a3e 409 ProSitePatterns PS00737 Thiolases signature 2. 355 371 - T 10-10-2018 IPR020613 Thiolase, conserved site GO:0016747 VF_1800 dea5c3111b1c1a651947f950e4b8aabc 141 SUPERFAMILY SSF54197 3 135 5.1E-31 T 10-10-2018 IPR036265 HIT-like superfamily VF_1800 dea5c3111b1c1a651947f950e4b8aabc 141 Gene3D G3DSA:3.30.428.10 1 141 7.5E-43 T 10-10-2018 IPR036265 HIT-like superfamily VF_1800 dea5c3111b1c1a651947f950e4b8aabc 141 Pfam PF01230 HIT domain 9 98 1.5E-12 T 10-10-2018 IPR001310 Histidine triad (HIT) protein VF_1800 dea5c3111b1c1a651947f950e4b8aabc 141 PIRSF PIRSF000714 2 139 1.4E-47 T 10-10-2018 IPR026026 Histidine triad hydrolase, Hint-type VF_0216 4754b58cbcb089c5ccc6142163b68ecd 322 PIRSF PIRSF005211 1 322 2.0E-101 T 10-10-2018 IPR012020 AB hydrolase 4 family VF_0216 4754b58cbcb089c5ccc6142163b68ecd 322 SUPERFAMILY SSF53474 34 299 9.13E-33 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_0216 4754b58cbcb089c5ccc6142163b68ecd 322 Pfam PF00561 alpha/beta hydrolase fold 60 301 1.8E-16 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_2192 a9e3c62bacdb6b06b59c34e237b39d3a 133 PRINTS PR00502 NUDIX hydrolase family signature 34 48 2.6E-9 T 10-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VF_2192 a9e3c62bacdb6b06b59c34e237b39d3a 133 PRINTS PR00502 NUDIX hydrolase family signature 48 63 2.6E-9 T 10-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VF_2192 a9e3c62bacdb6b06b59c34e237b39d3a 133 Gene3D G3DSA:3.90.79.10 1 132 6.7E-40 T 10-10-2018 VF_2192 a9e3c62bacdb6b06b59c34e237b39d3a 133 SUPERFAMILY SSF55811 2 127 3.93E-34 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VF_2192 a9e3c62bacdb6b06b59c34e237b39d3a 133 Pfam PF00293 NUDIX domain 5 124 3.2E-21 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VF_2192 a9e3c62bacdb6b06b59c34e237b39d3a 133 TIGRFAM TIGR00586 mutt: mutator mutT protein 1 127 9.1E-41 T 10-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 VF_2192 a9e3c62bacdb6b06b59c34e237b39d3a 133 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 10-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VF_0295 3623b35dcfa85c2746656b89e4bd3892 515 SMART SM00917 369 499 3.5E-27 T 10-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VF_0295 3623b35dcfa85c2746656b89e4bd3892 515 Gene3D G3DSA:3.30.160.270 394 500 1.4E-6 T 10-10-2018 VF_0295 3623b35dcfa85c2746656b89e4bd3892 515 SUPERFAMILY SSF51569 1 291 6.96E-100 T 10-10-2018 VF_0295 3623b35dcfa85c2746656b89e4bd3892 515 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 10-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VF_0295 3623b35dcfa85c2746656b89e4bd3892 515 SUPERFAMILY SSF110921 393 498 4.71E-20 T 10-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VF_0295 3623b35dcfa85c2746656b89e4bd3892 515 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 10-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VF_0295 3623b35dcfa85c2746656b89e4bd3892 515 Gene3D G3DSA:1.10.238.260 280 393 2.1E-32 T 10-10-2018 VF_0295 3623b35dcfa85c2746656b89e4bd3892 515 Pfam PF00682 HMGL-like 4 273 7.4E-101 T 10-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 VF_0295 3623b35dcfa85c2746656b89e4bd3892 515 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 498 3.0E-29 T 10-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VF_0295 3623b35dcfa85c2746656b89e4bd3892 515 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 508 42.062 T 10-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VF_0295 3623b35dcfa85c2746656b89e4bd3892 515 Gene3D G3DSA:3.20.20.70 1 277 1.8E-106 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0295 3623b35dcfa85c2746656b89e4bd3892 515 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 496 1.7E-234 T 10-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VF_A0356 6bedc73ba295e4682cd4200fb944dc66 353 TIGRFAM TIGR02636 galM_Leloir: galactose mutarotase 21 351 2.3E-145 T 10-10-2018 IPR013458 Aldose 1-epimerase, bacterial GO:0004034|GO:0006012 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 VF_A0356 6bedc73ba295e4682cd4200fb944dc66 353 PIRSF PIRSF005096 4 353 2.6E-122 T 10-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 VF_A0356 6bedc73ba295e4682cd4200fb944dc66 353 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 177 186 - T 10-10-2018 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 VF_A0356 6bedc73ba295e4682cd4200fb944dc66 353 SUPERFAMILY SSF74650 10 351 1.32E-109 T 10-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VF_A0356 6bedc73ba295e4682cd4200fb944dc66 353 Gene3D G3DSA:2.70.98.10 13 352 5.7E-116 T 10-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 VF_A0356 6bedc73ba295e4682cd4200fb944dc66 353 Pfam PF01263 Aldose 1-epimerase 24 349 3.6E-93 T 10-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 VF_A0236 ab3c31457547e4adebad7e322e39bef8 504 PIRSF PIRSF000538 4 503 1.9E-176 T 10-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 VF_A0236 ab3c31457547e4adebad7e322e39bef8 504 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 5 497 4.1E-225 T 10-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 VF_A0236 ab3c31457547e4adebad7e322e39bef8 504 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 363 383 - T 10-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 VF_A0236 ab3c31457547e4adebad7e322e39bef8 504 Hamap MF_00186 Glycerol kinase [glpK]. 4 498 58.139 T 10-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 VF_A0236 ab3c31457547e4adebad7e322e39bef8 504 Gene3D G3DSA:3.30.420.40 255 500 2.7E-92 T 10-10-2018 VF_A0236 ab3c31457547e4adebad7e322e39bef8 504 SUPERFAMILY SSF53067 5 256 2.68E-93 T 10-10-2018 VF_A0236 ab3c31457547e4adebad7e322e39bef8 504 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 136 148 - T 10-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 VF_A0236 ab3c31457547e4adebad7e322e39bef8 504 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 262 451 3.0E-58 T 10-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 VF_A0236 ab3c31457547e4adebad7e322e39bef8 504 Gene3D G3DSA:3.30.420.40 2 254 4.5E-112 T 10-10-2018 VF_A0236 ab3c31457547e4adebad7e322e39bef8 504 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 253 4.6E-86 T 10-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 VF_A0236 ab3c31457547e4adebad7e322e39bef8 504 SUPERFAMILY SSF53067 255 497 6.96E-84 T 10-10-2018 VF_0819 5bb65420e4968fa577764a313ede3b68 133 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 89 102 - T 10-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0819 5bb65420e4968fa577764a313ede3b68 133 Gene3D G3DSA:1.20.1300.10 7 133 1.5E-44 T 10-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0819 5bb65420e4968fa577764a313ede3b68 133 PIRSF PIRSF000178 1 133 2.3E-32 T 10-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0819 5bb65420e4968fa577764a313ede3b68 133 SUPERFAMILY SSF81343 10 133 2.62E-34 T 10-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0819 5bb65420e4968fa577764a313ede3b68 133 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 11 127 1.2E-29 T 10-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0819 5bb65420e4968fa577764a313ede3b68 133 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 12 130 4.0E-39 T 10-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_0819 5bb65420e4968fa577764a313ede3b68 133 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 14 38 - T 10-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VF_2441 d43449761dfef95f21a05fad5e682065 264 Gene3D G3DSA:3.40.50.150 3 219 3.2E-17 T 10-10-2018 VF_2441 d43449761dfef95f21a05fad5e682065 264 SUPERFAMILY SSF53335 12 244 6.73E-36 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_2441 d43449761dfef95f21a05fad5e682065 264 Pfam PF04072 Leucine carboxyl methyltransferase 64 122 4.7E-7 T 10-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 VF_2441 d43449761dfef95f21a05fad5e682065 264 PIRSF PIRSF028177 1 264 3.8E-65 T 10-10-2018 IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP GO:0017000|GO:1901106 VF_A1082 2306ddf19df6314bf27ed289697af54b 269 Gene3D G3DSA:1.10.10.60 156 268 1.2E-20 T 10-10-2018 VF_A1082 2306ddf19df6314bf27ed289697af54b 269 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 227 242 2.6E-5 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_A1082 2306ddf19df6314bf27ed289697af54b 269 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 242 258 2.6E-5 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VF_A1082 2306ddf19df6314bf27ed289697af54b 269 Pfam PF12833 Helix-turn-helix domain 183 258 4.3E-13 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A1082 2306ddf19df6314bf27ed289697af54b 269 SUPERFAMILY SSF46689 211 261 2.15E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A1082 2306ddf19df6314bf27ed289697af54b 269 SMART SM00342 176 258 1.4E-22 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A1029 68ac8207263ea10622fe709129e0caac 387 SUPERFAMILY SSF53756 1 364 2.78E-28 T 10-10-2018 VF_A1029 68ac8207263ea10622fe709129e0caac 387 Pfam PF00534 Glycosyl transferases group 1 206 351 5.1E-11 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 VF_A1029 68ac8207263ea10622fe709129e0caac 387 Gene3D G3DSA:3.40.50.2000 197 357 7.5E-19 T 10-10-2018 VF_0052 977dec69f33cad4b51316b1d3a233847 253 SUPERFAMILY SSF51556 1 252 4.42E-81 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_0052 977dec69f33cad4b51316b1d3a233847 253 PIRSF PIRSF005902 1 253 4.4E-73 T 10-10-2018 IPR001130 TatD family GO:0016788 VF_0052 977dec69f33cad4b51316b1d3a233847 253 Gene3D G3DSA:3.20.20.140 1 252 7.1E-81 T 10-10-2018 VF_0052 977dec69f33cad4b51316b1d3a233847 253 Pfam PF01026 TatD related DNase 2 251 7.8E-67 T 10-10-2018 IPR001130 TatD family GO:0016788 VF_0052 977dec69f33cad4b51316b1d3a233847 253 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 1 252 2.3E-74 T 10-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 VF_A0196 043cf6bd0848f172225c8feeade9388f 206 PRINTS PR01374 Gram-negative bacterial tonB protein signature 161 178 1.6E-15 T 10-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VF_A0196 043cf6bd0848f172225c8feeade9388f 206 PRINTS PR01374 Gram-negative bacterial tonB protein signature 121 142 1.6E-15 T 10-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VF_A0196 043cf6bd0848f172225c8feeade9388f 206 PRINTS PR01374 Gram-negative bacterial tonB protein signature 142 160 1.6E-15 T 10-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VF_A0196 043cf6bd0848f172225c8feeade9388f 206 PRINTS PR01374 Gram-negative bacterial tonB protein signature 62 72 1.6E-15 T 10-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VF_A0196 043cf6bd0848f172225c8feeade9388f 206 Gene3D G3DSA:3.30.1150.10 103 206 4.0E-30 T 10-10-2018 VF_A0196 043cf6bd0848f172225c8feeade9388f 206 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 127 204 8.6E-20 T 10-10-2018 IPR006260 TonB/TolA, C-terminal VF_A0196 043cf6bd0848f172225c8feeade9388f 206 SUPERFAMILY SSF74653 118 195 4.84E-25 T 10-10-2018 VF_A0196 043cf6bd0848f172225c8feeade9388f 206 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 126 204 1.2E-20 T 10-10-2018 IPR037682 TonB, C-terminal GO:0055085 VF_1797 b5a717df3d24f613db993a4a08b73db7 203 Pfam PF13505 Outer membrane protein beta-barrel domain 11 203 2.6E-12 T 10-10-2018 IPR027385 Outer membrane protein beta-barrel VF_1797 b5a717df3d24f613db993a4a08b73db7 203 Gene3D G3DSA:2.40.160.20 22 203 6.2E-7 T 10-10-2018 VF_1235 652c0e47b0727ea70773dd8ff199c659 327 Gene3D G3DSA:3.30.930.10 7 327 1.1E-124 T 10-10-2018 VF_1235 652c0e47b0727ea70773dd8ff199c659 327 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 327 7.4E-112 T 10-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 VF_1235 652c0e47b0727ea70773dd8ff199c659 327 Pfam PF01409 tRNA synthetases class II core domain (F) 92 326 4.6E-106 T 10-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 VF_1235 652c0e47b0727ea70773dd8ff199c659 327 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 326 48.582 T 10-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 VF_1235 652c0e47b0727ea70773dd8ff199c659 327 SUPERFAMILY SSF46589 13 99 1.73E-21 T 10-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 VF_1235 652c0e47b0727ea70773dd8ff199c659 327 SUPERFAMILY SSF55681 92 327 1.87E-81 T 10-10-2018 VF_1235 652c0e47b0727ea70773dd8ff199c659 327 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 3.8E-24 T 10-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 VF_0747 5df5f35034e49900ae421ab0d5a7a950 373 Pfam PF01098 Cell cycle protein 21 367 3.3E-111 T 10-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_0747 5df5f35034e49900ae421ab0d5a7a950 373 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 324 348 - T 10-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_0747 5df5f35034e49900ae421ab0d5a7a950 373 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 20 367 3.4E-133 T 10-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_0747 5df5f35034e49900ae421ab0d5a7a950 373 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 16 369 28.023 T 10-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_A0168 320f6b3f8126717546c9a303d3decb78 416 SUPERFAMILY SSF58104 260 394 3.14E-7 T 10-10-2018 VF_A0168 320f6b3f8126717546c9a303d3decb78 416 SUPERFAMILY SSF158472 210 263 6.15E-6 T 10-10-2018 VF_A0168 320f6b3f8126717546c9a303d3decb78 416 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 169 7.3E-12 T 10-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VF_A0168 320f6b3f8126717546c9a303d3decb78 416 Gene3D G3DSA:1.20.1480.50 171 270 4.8E-10 T 10-10-2018 VF_A0168 320f6b3f8126717546c9a303d3decb78 416 SMART SM00304 210 264 0.0097 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_0064 5b1da0c21696d5c10f46dd37e28aa56d 390 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 44 372 1.9E-100 T 10-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX VF_0051 524ec34b5a7d1e05c6240b9bd85bbbef 251 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 10 227 1.3E-77 T 10-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VF_0051 524ec34b5a7d1e05c6240b9bd85bbbef 251 Pfam PF00902 Sec-independent protein translocase protein (TatC) 13 222 6.6E-68 T 10-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VF_0051 524ec34b5a7d1e05c6240b9bd85bbbef 251 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 5 239 16.225 T 10-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VF_0051 524ec34b5a7d1e05c6240b9bd85bbbef 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 104 130 4.6E-51 T 10-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VF_0051 524ec34b5a7d1e05c6240b9bd85bbbef 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 9 36 4.6E-51 T 10-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VF_0051 524ec34b5a7d1e05c6240b9bd85bbbef 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 155 183 4.6E-51 T 10-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VF_0051 524ec34b5a7d1e05c6240b9bd85bbbef 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 86 104 4.6E-51 T 10-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VF_0051 524ec34b5a7d1e05c6240b9bd85bbbef 251 ProSitePatterns PS01218 TatC family signature. 155 174 - T 10-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site VF_0583 07ee3cb0cae351e073a96a27264369a3 672 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 5 669 2.0E-203 T 10-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 VF_0583 07ee3cb0cae351e073a96a27264369a3 672 Pfam PF13604 AAA domain 222 388 2.6E-32 T 10-10-2018 VF_0583 07ee3cb0cae351e073a96a27264369a3 672 Gene3D G3DSA:1.10.10.1020 1 115 2.0E-30 T 10-10-2018 VF_0583 07ee3cb0cae351e073a96a27264369a3 672 Gene3D G3DSA:3.40.50.300 432 539 5.6E-27 T 10-10-2018 VF_0583 07ee3cb0cae351e073a96a27264369a3 672 Gene3D G3DSA:3.40.50.300 540 660 3.0E-27 T 10-10-2018 VF_0583 07ee3cb0cae351e073a96a27264369a3 672 SUPERFAMILY SSF52540 350 670 3.85E-61 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0583 07ee3cb0cae351e073a96a27264369a3 672 SUPERFAMILY SSF52540 4 427 8.64E-49 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0583 07ee3cb0cae351e073a96a27264369a3 672 Gene3D G3DSA:3.40.50.300 190 422 6.8E-76 T 10-10-2018 VF_0583 07ee3cb0cae351e073a96a27264369a3 672 Pfam PF13538 UvrD-like helicase C-terminal domain 600 644 5.5E-15 T 10-10-2018 IPR027785 UvrD-like helicase C-terminal domain VF_0583 07ee3cb0cae351e073a96a27264369a3 672 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 14 669 50.077 T 10-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 VF_A0869 45031e9fa200144632d9e76576a662f1 149 ProDom PD091271 BIOSYNTHESIS PILUS S TOXIN TOXIN-COREGULATED TCPS PERIPLASMIC TCP COREGULATED TCPS 10 147 1.0E-57 T 10-10-2018 IPR020213 Toxin coregulated pilus biosynthesis protein TcpS VF_A0869 45031e9fa200144632d9e76576a662f1 149 Pfam PF17456 Toxin-coregulated pilus protein S 1 149 1.2E-72 T 10-10-2018 IPR020213 Toxin coregulated pilus biosynthesis protein TcpS VF_1889 71cfcb73197b25decabe6ba50fa07185 350 Gene3D G3DSA:2.40.160.10 34 350 5.2E-37 T 10-10-2018 IPR023614 Porin domain superfamily VF_1889 71cfcb73197b25decabe6ba50fa07185 350 SUPERFAMILY SSF56935 34 350 1.43E-38 T 10-10-2018 VF_1889 71cfcb73197b25decabe6ba50fa07185 350 Pfam PF13609 Gram-negative porin 13 298 2.6E-33 T 10-10-2018 VF_1889 71cfcb73197b25decabe6ba50fa07185 350 PRINTS PR00184 Neisseria sp. porin signature 63 88 2.8E-8 T 10-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 VF_1889 71cfcb73197b25decabe6ba50fa07185 350 PRINTS PR00184 Neisseria sp. porin signature 156 173 2.8E-8 T 10-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 VF_1889 71cfcb73197b25decabe6ba50fa07185 350 PRINTS PR00184 Neisseria sp. porin signature 99 118 2.8E-8 T 10-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 VF_1889 71cfcb73197b25decabe6ba50fa07185 350 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 101 111 7.9E-7 T 10-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 VF_1889 71cfcb73197b25decabe6ba50fa07185 350 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 157 168 7.9E-7 T 10-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 VF_1889 71cfcb73197b25decabe6ba50fa07185 350 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 61 72 7.9E-7 T 10-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 VF_1889 71cfcb73197b25decabe6ba50fa07185 350 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 342 350 7.9E-7 T 10-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 VF_1172 3b67c789c89894a6c87015daf9492165 388 Pfam PF03222 Tryptophan/tyrosine permease family 4 385 3.4E-66 T 10-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 VF_1172 3b67c789c89894a6c87015daf9492165 388 PRINTS PR00166 Aromatic amino acid permease signature 182 204 3.3E-26 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1172 3b67c789c89894a6c87015daf9492165 388 PRINTS PR00166 Aromatic amino acid permease signature 37 56 3.3E-26 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1172 3b67c789c89894a6c87015daf9492165 388 PRINTS PR00166 Aromatic amino acid permease signature 10 33 3.3E-26 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1172 3b67c789c89894a6c87015daf9492165 388 PRINTS PR00166 Aromatic amino acid permease signature 306 324 3.3E-26 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1172 3b67c789c89894a6c87015daf9492165 388 PRINTS PR00166 Aromatic amino acid permease signature 147 167 3.3E-26 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1172 3b67c789c89894a6c87015daf9492165 388 PRINTS PR00166 Aromatic amino acid permease signature 82 102 3.3E-26 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1172 3b67c789c89894a6c87015daf9492165 388 PRINTS PR00166 Aromatic amino acid permease signature 327 346 3.3E-26 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1172 3b67c789c89894a6c87015daf9492165 388 Gene3D G3DSA:1.20.1740.10 2 387 2.3E-5 T 10-10-2018 VF_2072 88f4fc14c71db81e5160388dfbdaff27 158 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 10-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VF_2072 88f4fc14c71db81e5160388dfbdaff27 158 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 156 1.5E-70 T 10-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VF_2072 88f4fc14c71db81e5160388dfbdaff27 158 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 156 36.045 T 10-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VF_2072 88f4fc14c71db81e5160388dfbdaff27 158 Gene3D G3DSA:3.30.1330.50 1 158 2.7E-70 T 10-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VF_2072 88f4fc14c71db81e5160388dfbdaff27 158 Pfam PF02542 YgbB family 1 154 8.1E-66 T 10-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VF_2072 88f4fc14c71db81e5160388dfbdaff27 158 SUPERFAMILY SSF69765 1 156 6.54E-66 T 10-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VF_0880 4dab792c9963d783b72ec2437ce65485 234 SUPERFAMILY SSF55120 60 228 8.0E-43 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0880 4dab792c9963d783b72ec2437ce65485 234 Gene3D G3DSA:3.30.70.580 62 228 6.9E-55 T 10-10-2018 VF_0880 4dab792c9963d783b72ec2437ce65485 234 Gene3D G3DSA:3.10.290.10 1 61 1.2E-16 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VF_0880 4dab792c9963d783b72ec2437ce65485 234 SMART SM00363 1 59 1.2E-7 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0880 4dab792c9963d783b72ec2437ce65485 234 SUPERFAMILY SSF55174 1 83 1.06E-13 T 10-10-2018 VF_0880 4dab792c9963d783b72ec2437ce65485 234 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 225 1.4E-46 T 10-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 VF_0880 4dab792c9963d783b72ec2437ce65485 234 Pfam PF01479 S4 domain 1 43 2.0E-8 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_0880 4dab792c9963d783b72ec2437ce65485 234 Gene3D G3DSA:3.30.70.1560 127 210 6.9E-55 T 10-10-2018 VF_0880 4dab792c9963d783b72ec2437ce65485 234 Pfam PF00849 RNA pseudouridylate synthase 61 193 3.1E-16 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_0880 4dab792c9963d783b72ec2437ce65485 234 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 98 112 - T 10-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 VF_A0967 381bcfad62c7cd1f4a9b9a7777bf7317 406 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 194 402 4.2E-65 T 10-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 VF_A0967 381bcfad62c7cd1f4a9b9a7777bf7317 406 Pfam PF07670 Nucleoside recognition 92 186 5.6E-6 T 10-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VF_A0967 381bcfad62c7cd1f4a9b9a7777bf7317 406 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 5 402 2.0E-134 T 10-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 VF_A0967 381bcfad62c7cd1f4a9b9a7777bf7317 406 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 7.7E-24 T 10-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 VF_A0393 b569a0b6213e8ff7a45dd6eb49185b04 248 SMART SM00382 36 219 7.8E-15 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0393 b569a0b6213e8ff7a45dd6eb49185b04 248 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0393 b569a0b6213e8ff7a45dd6eb49185b04 248 Pfam PF00005 ABC transporter 27 171 1.5E-36 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0393 b569a0b6213e8ff7a45dd6eb49185b04 248 PIRSF PIRSF039085 8 247 4.8E-103 T 10-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VF_A0393 b569a0b6213e8ff7a45dd6eb49185b04 248 SUPERFAMILY SSF52540 11 241 3.17E-77 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0393 b569a0b6213e8ff7a45dd6eb49185b04 248 Gene3D G3DSA:3.40.50.300 9 248 5.4E-76 T 10-10-2018 VF_1905 c2867283e308d49af40218f3db32193a 829 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 828 32.156 T 10-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 VF_1905 c2867283e308d49af40218f3db32193a 829 Gene3D G3DSA:2.40.40.20 705 828 2.0E-45 T 10-10-2018 VF_1905 c2867283e308d49af40218f3db32193a 829 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 46 63 - T 10-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 VF_1905 c2867283e308d49af40218f3db32193a 829 Gene3D G3DSA:3.30.200.210 41 666 0.0 T 10-10-2018 VF_1905 c2867283e308d49af40218f3db32193a 829 Pfam PF00384 Molybdopterin oxidoreductase 98 570 1.7E-94 T 10-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_1905 c2867283e308d49af40218f3db32193a 829 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 2 828 0.0 T 10-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 VF_1905 c2867283e308d49af40218f3db32193a 829 Pfam PF01568 Molydopterin dinucleotide binding domain 714 822 1.9E-26 T 10-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VF_1905 c2867283e308d49af40218f3db32193a 829 SMART SM00926 41 95 8.2E-14 T 10-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_1905 c2867283e308d49af40218f3db32193a 829 SUPERFAMILY SSF53706 38 698 2.09E-199 T 10-10-2018 VF_1905 c2867283e308d49af40218f3db32193a 829 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 41 94 7.1E-17 T 10-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_1905 c2867283e308d49af40218f3db32193a 829 SUPERFAMILY SSF50692 688 828 6.78E-43 T 10-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VF_1905 c2867283e308d49af40218f3db32193a 829 Gene3D G3DSA:3.40.228.10 177 702 0.0 T 10-10-2018 VF_1905 c2867283e308d49af40218f3db32193a 829 Gene3D G3DSA:3.40.50.740 98 623 0.0 T 10-10-2018 VF_A0776 0266f4312e7849caa7c44666d3db3da4 206 SUPERFAMILY SSF74653 118 192 3.66E-23 T 10-10-2018 VF_A0776 0266f4312e7849caa7c44666d3db3da4 206 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 126 204 7.5E-19 T 10-10-2018 IPR037682 TonB, C-terminal GO:0055085 VF_A0776 0266f4312e7849caa7c44666d3db3da4 206 PRINTS PR01374 Gram-negative bacterial tonB protein signature 61 71 1.6E-12 T 10-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VF_A0776 0266f4312e7849caa7c44666d3db3da4 206 PRINTS PR01374 Gram-negative bacterial tonB protein signature 142 160 1.6E-12 T 10-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VF_A0776 0266f4312e7849caa7c44666d3db3da4 206 PRINTS PR01374 Gram-negative bacterial tonB protein signature 161 178 1.6E-12 T 10-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VF_A0776 0266f4312e7849caa7c44666d3db3da4 206 PRINTS PR01374 Gram-negative bacterial tonB protein signature 121 142 1.6E-12 T 10-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VF_A0776 0266f4312e7849caa7c44666d3db3da4 206 Gene3D G3DSA:3.30.1150.10 103 205 2.1E-27 T 10-10-2018 VF_A0776 0266f4312e7849caa7c44666d3db3da4 206 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 127 204 4.2E-18 T 10-10-2018 IPR006260 TonB/TolA, C-terminal VF_2542 636c5fbc9801a68492b8fff8eb6aec15 356 Gene3D G3DSA:3.10.350.10 36 83 4.8E-14 T 10-10-2018 IPR036779 LysM domain superfamily VF_2542 636c5fbc9801a68492b8fff8eb6aec15 356 SUPERFAMILY SSF54106 37 84 7.06E-7 T 10-10-2018 VF_2542 636c5fbc9801a68492b8fff8eb6aec15 356 SMART SM00257 37 85 8.2E-8 T 10-10-2018 IPR018392 LysM domain VF_2542 636c5fbc9801a68492b8fff8eb6aec15 356 Pfam PF01476 LysM domain 38 84 1.7E-12 T 10-10-2018 IPR018392 LysM domain VF_1162 0839de186270546c479140edf6853a70 426 SUPERFAMILY SSF56954 8 415 1.09E-66 T 10-10-2018 VF_1162 0839de186270546c479140edf6853a70 426 Gene3D G3DSA:1.20.1600.10 29 426 1.4E-66 T 10-10-2018 VF_1162 0839de186270546c479140edf6853a70 426 Pfam PF02321 Outer membrane efflux protein 31 202 5.9E-18 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VF_1162 0839de186270546c479140edf6853a70 426 Pfam PF02321 Outer membrane efflux protein 228 408 1.9E-29 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VF_1198 f5f4d2d48b55e33db2a4a088a2f582a7 410 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 410 105.92 T 10-10-2018 IPR008135 Competence-induced protein CinA VF_1198 f5f4d2d48b55e33db2a4a088a2f582a7 410 Pfam PF00994 Probable molybdopterin binding domain 5 170 3.0E-31 T 10-10-2018 IPR001453 MoaB/Mog domain VF_1198 f5f4d2d48b55e33db2a4a088a2f582a7 410 SUPERFAMILY SSF53218 2 205 3.27E-36 T 10-10-2018 IPR036425 MoaB/Mog-like domain superfamily VF_1198 f5f4d2d48b55e33db2a4a088a2f582a7 410 SUPERFAMILY SSF142433 252 386 1.11E-6 T 10-10-2018 IPR036653 CinA-like, C-terminal VF_1198 f5f4d2d48b55e33db2a4a088a2f582a7 410 SMART SM00852 5 172 6.4E-33 T 10-10-2018 IPR001453 MoaB/Mog domain VF_1198 f5f4d2d48b55e33db2a4a088a2f582a7 410 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 167 1.6E-29 T 10-10-2018 IPR001453 MoaB/Mog domain VF_1198 f5f4d2d48b55e33db2a4a088a2f582a7 410 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 353 2.1E-79 T 10-10-2018 IPR008135 Competence-induced protein CinA VF_1198 f5f4d2d48b55e33db2a4a088a2f582a7 410 PIRSF PIRSF006728 1 391 1.6E-101 T 10-10-2018 IPR008135 Competence-induced protein CinA VF_1198 f5f4d2d48b55e33db2a4a088a2f582a7 410 Gene3D G3DSA:3.40.980.10 2 172 9.0E-48 T 10-10-2018 IPR036425 MoaB/Mog-like domain superfamily VF_A0774 a1e01f0d6110ed78ff56efdfd17fc3ae 248 Hamap MF_01561 Probable phosphatase YcdX [ycdX]. 2 244 53.918 T 10-10-2018 IPR023710 Probable phosphatase YcdX GO:0008270 VF_A0774 a1e01f0d6110ed78ff56efdfd17fc3ae 248 SUPERFAMILY SSF89550 4 243 5.1E-60 T 10-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 VF_A0774 a1e01f0d6110ed78ff56efdfd17fc3ae 248 Gene3D G3DSA:3.20.20.140 3 246 9.9E-60 T 10-10-2018 VF_A0774 a1e01f0d6110ed78ff56efdfd17fc3ae 248 SMART SM00481 5 79 2.5E-5 T 10-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal VF_0344 856f638ce90d5814ed228bd7b79bdf80 377 SUPERFAMILY SSF53756 5 368 1.12E-61 T 10-10-2018 VF_0344 856f638ce90d5814ed228bd7b79bdf80 377 Gene3D G3DSA:3.40.50.2000 189 368 2.0E-31 T 10-10-2018 VF_0344 856f638ce90d5814ed228bd7b79bdf80 377 Pfam PF00534 Glycosyl transferases group 1 200 311 2.8E-24 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 VF_0344 856f638ce90d5814ed228bd7b79bdf80 377 Gene3D G3DSA:3.40.50.2000 3 188 1.4E-17 T 10-10-2018 VF_0344 856f638ce90d5814ed228bd7b79bdf80 377 Pfam PF13439 Glycosyltransferase Family 4 18 177 5.1E-14 T 10-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 VF_2302 b589930be44e10e183c8a7d681eff6a0 82 Pfam PF12292 Protein of unknown function (DUF3624) 1 75 1.5E-34 T 10-10-2018 IPR022072 Protein of unknown function DUF3624 VF_1071 bff608ad674d4bb9356dddbbc0e76269 532 Gene3D G3DSA:2.60.120.600 353 532 3.1E-46 T 10-10-2018 IPR037049 Domain of unknown function DUF1214, C-terminal domain superfamily VF_1071 bff608ad674d4bb9356dddbbc0e76269 532 Gene3D G3DSA:2.60.40.1610 92 253 8.3E-73 T 10-10-2018 IPR037050 Domain of unknown function DUF1254 superfamily VF_1071 bff608ad674d4bb9356dddbbc0e76269 532 SUPERFAMILY SSF160935 34 528 1.09E-100 T 10-10-2018 VF_1071 bff608ad674d4bb9356dddbbc0e76269 532 Gene3D G3DSA:1.10.3360.10 60 317 8.3E-73 T 10-10-2018 IPR023289 VPA0735-like domain superfamily VF_1071 bff608ad674d4bb9356dddbbc0e76269 532 Pfam PF06742 Protein of unknown function (DUF1214) 404 513 1.6E-22 T 10-10-2018 IPR010621 Domain of unknown function DUF1214 VF_1071 bff608ad674d4bb9356dddbbc0e76269 532 Pfam PF06863 Protein of unknown function (DUF1254) 93 237 2.4E-21 T 10-10-2018 IPR010679 Domain of unknown function DUF1254 VF_1263 0b1a4e3d1d09488f062e84790ea10b8c 228 Pfam PF09335 SNARE associated Golgi protein 65 181 3.6E-24 T 10-10-2018 IPR032816 SNARE associated Golgi protein VF_1081 f2ae261886d8b224139d147a2ca7ce1f 194 Gene3D G3DSA:1.10.357.10 67 193 3.8E-17 T 10-10-2018 VF_1081 f2ae261886d8b224139d147a2ca7ce1f 194 SUPERFAMILY SSF46689 3 67 1.08E-13 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1081 f2ae261886d8b224139d147a2ca7ce1f 194 SUPERFAMILY SSF48498 79 190 3.48E-20 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VF_1081 f2ae261886d8b224139d147a2ca7ce1f 194 Gene3D G3DSA:1.10.10.60 2 65 1.6E-20 T 10-10-2018 VF_1081 f2ae261886d8b224139d147a2ca7ce1f 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 57 4.6E-10 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_1081 f2ae261886d8b224139d147a2ca7ce1f 194 Pfam PF16925 Bacterial transcriptional repressor C-terminal 79 190 1.6E-7 T 10-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal VF_1058 bd5bd67fe810284a8e455439ea378b37 204 SUPERFAMILY SSF56529 11 189 4.32E-46 T 10-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 VF_1058 bd5bd67fe810284a8e455439ea378b37 204 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 16 178 1.4E-28 T 10-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 VF_1058 bd5bd67fe810284a8e455439ea378b37 204 Gene3D G3DSA:3.90.850.10 8 203 3.2E-46 T 10-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 VF_0872 69ce7412faaa608d2b4eb815ba5c2d96 362 SMART SM00283 41 255 2.2E-17 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0872 69ce7412faaa608d2b4eb815ba5c2d96 362 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 168 197 1.8E-9 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_0872 69ce7412faaa608d2b4eb815ba5c2d96 362 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 69 98 1.8E-9 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_0872 69ce7412faaa608d2b4eb815ba5c2d96 362 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 216 245 1.8E-9 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_0872 69ce7412faaa608d2b4eb815ba5c2d96 362 SUPERFAMILY SSF58104 22 244 1.44E-45 T 10-10-2018 VF_0872 69ce7412faaa608d2b4eb815ba5c2d96 362 Pfam PF13682 Chemoreceptor zinc-binding domain 258 321 9.7E-15 T 10-10-2018 IPR025991 Chemoreceptor zinc-binding domain VF_0872 69ce7412faaa608d2b4eb815ba5c2d96 362 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 115 242 3.1E-31 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0872 69ce7412faaa608d2b4eb815ba5c2d96 362 Gene3D G3DSA:1.10.287.950 3 254 1.5E-44 T 10-10-2018 VF_0048 7045c0bdb85eef46bde28bc2d34f6921 544 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 539 55.076 T 10-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 VF_0048 7045c0bdb85eef46bde28bc2d34f6921 544 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 6 445 1.6E-174 T 10-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 VF_0048 7045c0bdb85eef46bde28bc2d34f6921 544 Pfam PF03109 ABC1 family 112 230 2.5E-35 T 10-10-2018 IPR004147 UbiB domain VF_0048 7045c0bdb85eef46bde28bc2d34f6921 544 SUPERFAMILY SSF56112 94 436 7.34E-45 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily VF_0651 33a64d79192e55bea311a0907b4e9cac 495 SUPERFAMILY SSF53955 248 451 9.38E-36 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_0651 33a64d79192e55bea311a0907b4e9cac 495 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 5 477 50.01 T 10-10-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 VF_0651 33a64d79192e55bea311a0907b4e9cac 495 Pfam PF01464 Transglycosylase SLT domain 301 401 4.5E-20 T 10-10-2018 IPR008258 Transglycosylase SLT domain 1 VF_0651 33a64d79192e55bea311a0907b4e9cac 495 Gene3D G3DSA:1.10.530.10 291 452 5.9E-33 T 10-10-2018 VF_0651 33a64d79192e55bea311a0907b4e9cac 495 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 54 269 6.2E-40 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_0651 33a64d79192e55bea311a0907b4e9cac 495 Gene3D G3DSA:3.40.190.10 129 226 2.3E-73 T 10-10-2018 VF_0651 33a64d79192e55bea311a0907b4e9cac 495 SUPERFAMILY SSF53850 45 269 8.22E-44 T 10-10-2018 VF_0651 33a64d79192e55bea311a0907b4e9cac 495 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 311 339 - T 10-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 VF_0651 33a64d79192e55bea311a0907b4e9cac 495 Gene3D G3DSA:3.40.190.10 38 265 2.3E-73 T 10-10-2018 VF_0651 33a64d79192e55bea311a0907b4e9cac 495 SMART SM00062 44 270 1.6E-38 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_1284 7585512ca9968bbe836f00289e3ec446 1612 SUPERFAMILY SSF53223 753 955 9.78E-26 T 10-10-2018 VF_1284 7585512ca9968bbe836f00289e3ec446 1612 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 76 1600 0.0 T 10-10-2018 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 VF_1284 7585512ca9968bbe836f00289e3ec446 1612 SUPERFAMILY SSF51735 944 1280 2.82E-31 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1284 7585512ca9968bbe836f00289e3ec446 1612 PIRSF PIRSF036761 1 1607 0.0 T 10-10-2018 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 VF_A1125 b3e36f1e3d469d5b9809f505d69e8363 475 Gene3D G3DSA:3.40.1160.10 3 308 3.8E-55 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_A1125 b3e36f1e3d469d5b9809f505d69e8363 475 SUPERFAMILY SSF55021 398 465 3.97E-9 T 10-10-2018 VF_A1125 b3e36f1e3d469d5b9809f505d69e8363 475 Gene3D G3DSA:3.30.2130.10 309 467 1.2E-9 T 10-10-2018 VF_A1125 b3e36f1e3d469d5b9809f505d69e8363 475 Pfam PF00696 Amino acid kinase family 4 293 8.3E-24 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VF_A1125 b3e36f1e3d469d5b9809f505d69e8363 475 SUPERFAMILY SSF53633 4 307 1.14E-55 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_A0799 44da78beedab36bd3b299d5f038a996a 394 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 130 147 - T 10-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 VF_A0799 44da78beedab36bd3b299d5f038a996a 394 Gene3D G3DSA:3.40.190.10 45 355 6.2E-120 T 10-10-2018 VF_A0799 44da78beedab36bd3b299d5f038a996a 394 Pfam PF13416 Bacterial extracellular solute-binding protein 47 324 2.4E-39 T 10-10-2018 IPR006059 Bacterial extracellular solute-binding protein VF_A0799 44da78beedab36bd3b299d5f038a996a 394 SUPERFAMILY SSF53850 25 393 2.79E-80 T 10-10-2018 VF_A0799 44da78beedab36bd3b299d5f038a996a 394 PRINTS PR00181 Maltose binding protein signature 148 167 1.8E-56 T 10-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VF_A0799 44da78beedab36bd3b299d5f038a996a 394 PRINTS PR00181 Maltose binding protein signature 297 318 1.8E-56 T 10-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VF_A0799 44da78beedab36bd3b299d5f038a996a 394 PRINTS PR00181 Maltose binding protein signature 67 85 1.8E-56 T 10-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VF_A0799 44da78beedab36bd3b299d5f038a996a 394 PRINTS PR00181 Maltose binding protein signature 33 51 1.8E-56 T 10-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VF_A0799 44da78beedab36bd3b299d5f038a996a 394 PRINTS PR00181 Maltose binding protein signature 127 146 1.8E-56 T 10-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VF_A0799 44da78beedab36bd3b299d5f038a996a 394 PRINTS PR00181 Maltose binding protein signature 231 250 1.8E-56 T 10-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VF_A0799 44da78beedab36bd3b299d5f038a996a 394 PRINTS PR00181 Maltose binding protein signature 355 374 1.8E-56 T 10-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VF_A0799 44da78beedab36bd3b299d5f038a996a 394 Gene3D G3DSA:3.40.190.10 135 387 6.2E-120 T 10-10-2018 VF_0166 0fba42b5c32f26dcffa3d1f14c1278d2 364 SUPERFAMILY SSF51735 1 337 1.64E-92 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0166 0fba42b5c32f26dcffa3d1f14c1278d2 364 Gene3D G3DSA:3.90.25.10 201 333 4.5E-139 T 10-10-2018 VF_0166 0fba42b5c32f26dcffa3d1f14c1278d2 364 Gene3D G3DSA:3.40.50.720 2 325 4.5E-139 T 10-10-2018 VF_0166 0fba42b5c32f26dcffa3d1f14c1278d2 364 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 326 8.0E-99 T 10-10-2018 IPR016040 NAD(P)-binding domain VF_0166 0fba42b5c32f26dcffa3d1f14c1278d2 364 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 339 4.4E-160 T 10-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 TIGRFAM TIGR00016 ackA: acetate kinase 3 397 4.5E-145 T 10-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 7 18 - T 10-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 PIRSF PIRSF000722 3 398 1.4E-134 T 10-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 Hamap MF_00020 Acetate kinase [ackA]. 1 398 169.128 T 10-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 Gene3D G3DSA:3.30.420.40 4 196 6.7E-66 T 10-10-2018 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 PRINTS PR00471 Acetate kinase family signature 7 18 7.2E-45 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 PRINTS PR00471 Acetate kinase family signature 300 313 7.2E-45 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 PRINTS PR00471 Acetate kinase family signature 204 225 7.2E-45 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 PRINTS PR00471 Acetate kinase family signature 322 338 7.2E-45 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 PRINTS PR00471 Acetate kinase family signature 379 391 7.2E-45 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 PRINTS PR00471 Acetate kinase family signature 174 187 7.2E-45 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 SUPERFAMILY SSF53067 6 197 4.86E-62 T 10-10-2018 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 Gene3D G3DSA:3.30.420.40 197 398 2.1E-72 T 10-10-2018 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 SUPERFAMILY SSF53067 159 397 7.87E-79 T 10-10-2018 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 Pfam PF00871 Acetokinase family 7 392 7.2E-142 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_A0794 f1c4e3078b6d26242a53cd9c2df003dc 398 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 204 221 - T 10-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VF_1602 cc4e855b3f6f4383fcbed97e4374f53b 241 SUPERFAMILY SSF56300 1 219 2.13E-28 T 10-10-2018 VF_1602 cc4e855b3f6f4383fcbed97e4374f53b 241 Pfam PF00149 Calcineurin-like phosphoesterase 1 199 6.0E-9 T 10-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VF_1602 cc4e855b3f6f4383fcbed97e4374f53b 241 Gene3D G3DSA:3.60.21.10 1 240 2.3E-16 T 10-10-2018 IPR029052 Metallo-dependent phosphatase-like VF_1602 cc4e855b3f6f4383fcbed97e4374f53b 241 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 241 116.431 T 10-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 VF_1602 cc4e855b3f6f4383fcbed97e4374f53b 241 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 4 230 6.5E-104 T 10-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 VF_A0342 85dbb1c935691394cad8eb6078c42f90 443 SUPERFAMILY SSF55073 294 436 2.9E-38 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0342 85dbb1c935691394cad8eb6078c42f90 443 SMART SM00267 278 437 1.5E-44 T 10-10-2018 IPR000160 GGDEF domain VF_A0342 85dbb1c935691394cad8eb6078c42f90 443 Gene3D G3DSA:3.30.70.270 288 442 6.4E-43 T 10-10-2018 VF_A0342 85dbb1c935691394cad8eb6078c42f90 443 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 291 436 1.0E-38 T 10-10-2018 IPR000160 GGDEF domain VF_A0342 85dbb1c935691394cad8eb6078c42f90 443 Pfam PF00990 Diguanylate cyclase, GGDEF domain 291 432 1.3E-36 T 10-10-2018 IPR000160 GGDEF domain VF_0304 9aed565f1040859f7d681136498d7514 550 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 498 515 - T 10-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0304 9aed565f1040859f7d681136498d7514 550 SUPERFAMILY SSF53697 6 548 2.7E-222 T 10-10-2018 VF_0304 9aed565f1040859f7d681136498d7514 550 Gene3D G3DSA:3.40.50.10490 99 292 2.4E-239 T 10-10-2018 VF_0304 9aed565f1040859f7d681136498d7514 550 Pfam PF00342 Phosphoglucose isomerase 53 542 1.3E-254 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0304 9aed565f1040859f7d681136498d7514 550 Gene3D G3DSA:1.10.1390.10 508 548 4.4E-20 T 10-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0304 9aed565f1040859f7d681136498d7514 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 339 360 2.5E-56 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0304 9aed565f1040859f7d681136498d7514 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 466 484 2.5E-56 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0304 9aed565f1040859f7d681136498d7514 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 262 280 2.5E-56 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0304 9aed565f1040859f7d681136498d7514 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 498 511 2.5E-56 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0304 9aed565f1040859f7d681136498d7514 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 151 170 2.5E-56 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0304 9aed565f1040859f7d681136498d7514 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 484 498 2.5E-56 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0304 9aed565f1040859f7d681136498d7514 550 Gene3D G3DSA:3.40.50.10490 13 507 2.4E-239 T 10-10-2018 VF_0304 9aed565f1040859f7d681136498d7514 550 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 266 279 - T 10-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0304 9aed565f1040859f7d681136498d7514 550 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 47 525 42.624 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_1920 30ca7cd1bfd73181908dca70b8492495 156 SUPERFAMILY SSF52833 4 155 4.76E-45 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1920 30ca7cd1bfd73181908dca70b8492495 156 Gene3D G3DSA:3.40.30.10 5 155 3.4E-42 T 10-10-2018 VF_1920 30ca7cd1bfd73181908dca70b8492495 156 Pfam PF00578 AhpC/TSA family 8 135 4.2E-31 T 10-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VF_1253 c04a70c4a76f76ab5ff4b14ade5bbfbd 369 Pfam PF00155 Aminotransferase class I and II 18 363 5.1E-41 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VF_1253 c04a70c4a76f76ab5ff4b14ade5bbfbd 369 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 10 367 7.3E-119 T 10-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 VF_1253 c04a70c4a76f76ab5ff4b14ade5bbfbd 369 Gene3D G3DSA:3.40.640.10 49 272 1.5E-129 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_1253 c04a70c4a76f76ab5ff4b14ade5bbfbd 369 Gene3D G3DSA:3.90.1150.10 8 363 1.5E-129 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_1253 c04a70c4a76f76ab5ff4b14ade5bbfbd 369 SUPERFAMILY SSF53383 3 368 1.46E-95 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_A1114 561bf0952da234e8d760c6c69009bb1a 227 Gene3D G3DSA:1.20.1510.10 8 212 7.8E-19 T 10-10-2018 IPR027469 Cation efflux transmembrane domain superfamily VF_A1114 561bf0952da234e8d760c6c69009bb1a 227 SUPERFAMILY SSF161111 6 213 2.48E-27 T 10-10-2018 IPR027469 Cation efflux transmembrane domain superfamily VF_A1114 561bf0952da234e8d760c6c69009bb1a 227 Pfam PF01545 Cation efflux family 12 212 4.9E-25 T 10-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 VF_2284 ddc809a7717168f1581e0b1c86c3c845 404 Gene3D G3DSA:3.90.1150.10 24 392 8.6E-146 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_2284 ddc809a7717168f1581e0b1c86c3c845 404 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 222 259 - T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VF_2284 ddc809a7717168f1581e0b1c86c3c845 404 Pfam PF00202 Aminotransferase class-III 22 399 1.2E-125 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VF_2284 ddc809a7717168f1581e0b1c86c3c845 404 Gene3D G3DSA:3.40.640.10 59 304 8.6E-146 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_2284 ddc809a7717168f1581e0b1c86c3c845 404 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 16 399 4.2E-147 T 10-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 VF_2284 ddc809a7717168f1581e0b1c86c3c845 404 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 7 402 9.5E-204 T 10-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 VF_2284 ddc809a7717168f1581e0b1c86c3c845 404 SUPERFAMILY SSF53383 16 400 1.09E-124 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_2284 ddc809a7717168f1581e0b1c86c3c845 404 PIRSF PIRSF000521 168 402 1.2E-37 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VF_2284 ddc809a7717168f1581e0b1c86c3c845 404 PIRSF PIRSF000521 26 156 1.7E-6 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VF_2284 ddc809a7717168f1581e0b1c86c3c845 404 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 15 402 68.319 T 10-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 VF_1534 282526dc4cdbb2d51a2511b307c1ae50 365 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 153 251 1.2E-23 T 10-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VF_1534 282526dc4cdbb2d51a2511b307c1ae50 365 SUPERFAMILY SSF161098 153 346 2.35E-42 T 10-10-2018 IPR035906 MetI-like superfamily VF_1534 282526dc4cdbb2d51a2511b307c1ae50 365 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 173 359 1.4E-24 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_1534 282526dc4cdbb2d51a2511b307c1ae50 365 Gene3D G3DSA:1.10.3720.10 146 363 1.0E-50 T 10-10-2018 IPR035906 MetI-like superfamily VF_0959 8b0716c660af3dd5baee4567ea911994 148 TIGRFAM TIGR02801 tolR: protein TolR 12 145 1.1E-39 T 10-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 VF_0959 8b0716c660af3dd5baee4567ea911994 148 Gene3D G3DSA:3.30.420.270 64 138 1.0E-20 T 10-10-2018 VF_0959 8b0716c660af3dd5baee4567ea911994 148 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 5 145 27.627 T 10-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 VF_0959 8b0716c660af3dd5baee4567ea911994 148 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 146 7.4E-26 T 10-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 VF_A0688 0d86f591e2fcc5960bd3a1390d476edf 260 SUPERFAMILY SSF47413 6 69 1.01E-5 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_A0062 e0c5cdb324bb4d25d73b6cf7a04534e3 423 SUPERFAMILY SSF50129 4 189 3.04E-22 T 10-10-2018 IPR011032 GroES-like superfamily VF_A0062 e0c5cdb324bb4d25d73b6cf7a04534e3 423 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 99 1.3E-6 T 10-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VF_A0062 e0c5cdb324bb4d25d73b6cf7a04534e3 423 Pfam PF00107 Zinc-binding dehydrogenase 187 329 2.6E-10 T 10-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 VF_A0062 e0c5cdb324bb4d25d73b6cf7a04534e3 423 SUPERFAMILY SSF51735 160 337 6.37E-14 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0062 e0c5cdb324bb4d25d73b6cf7a04534e3 423 Gene3D G3DSA:3.40.50.720 156 320 3.6E-36 T 10-10-2018 VF_A0062 e0c5cdb324bb4d25d73b6cf7a04534e3 423 Gene3D G3DSA:3.90.180.10 16 351 3.6E-36 T 10-10-2018 VF_B0055 bd1a3597bbc1650e9892b0cf758a3faf 344 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 40 256 2.1E-38 T 10-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 VF_1407 202cc76dee2f9020649a8aa2bff3078d 110 Pfam PF02810 SEC-C motif 93 110 6.7E-9 T 10-10-2018 IPR004027 SEC-C motif VF_1407 202cc76dee2f9020649a8aa2bff3078d 110 SUPERFAMILY SSF103642 91 109 3.27E-7 T 10-10-2018 VF_1407 202cc76dee2f9020649a8aa2bff3078d 110 Gene3D G3DSA:3.10.450.50 37 110 1.6E-10 T 10-10-2018 VF_1407 202cc76dee2f9020649a8aa2bff3078d 110 TIGRFAM TIGR04102 SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family 3 110 6.9E-54 T 10-10-2018 IPR026368 SWIM/SEC-C metal-binding motif protein, PBPRA1643 family VF_0373 ddfc6834209de0878592411022e84fa8 283 Pfam PF04085 rod shape-determining protein MreC 123 269 5.8E-40 T 10-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 VF_0373 ddfc6834209de0878592411022e84fa8 283 PIRSF PIRSF038471 2 283 1.6E-76 T 10-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 VF_0373 ddfc6834209de0878592411022e84fa8 283 Gene3D G3DSA:2.40.10.350 180 257 1.9E-37 T 10-10-2018 VF_0373 ddfc6834209de0878592411022e84fa8 283 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 5 275 2.6E-90 T 10-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 VF_0373 ddfc6834209de0878592411022e84fa8 283 Gene3D G3DSA:2.40.10.340 122 266 1.9E-37 T 10-10-2018 VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 Gene3D G3DSA:3.30.565.10 276 436 3.6E-48 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 SUPERFAMILY SSF52172 454 571 4.55E-32 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 Pfam PF00512 His Kinase A (phospho-acceptor) domain 214 277 1.1E-18 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 SMART SM00388 212 277 8.0E-21 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 Gene3D G3DSA:3.40.50.2300 437 571 6.9E-34 T 10-10-2018 VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 SMART SM00448 456 567 7.6E-32 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 SUPERFAMILY SSF55874 266 433 8.91E-45 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 SUPERFAMILY SSF47384 200 277 6.67E-19 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 324 434 1.8E-30 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 Pfam PF00072 Response regulator receiver domain 458 567 2.9E-24 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 374 2.4E-18 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 388 2.4E-18 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 413 2.4E-18 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 432 2.4E-18 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 Gene3D G3DSA:1.10.287.130 180 275 5.3E-22 T 10-10-2018 VF_A0072 bff4888608a6ee1fc374cd8e56e6bd9c 575 SMART SM00387 324 435 7.1E-38 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0895 89a27e0c68970cba033003ca68c5201a 307 SUPERFAMILY SSF109604 24 300 3.45E-38 T 10-10-2018 VF_0895 89a27e0c68970cba033003ca68c5201a 307 Pfam PF08668 HDOD domain 39 238 2.7E-48 T 10-10-2018 IPR013976 Metal-dependent hydrolase HDOD VF_0895 89a27e0c68970cba033003ca68c5201a 307 Gene3D G3DSA:1.10.3210.10 19 293 4.7E-37 T 10-10-2018 VF_1194 b72dd0279bc535fa0f1b8896a32ef095 217 Gene3D G3DSA:3.60.15.10 3 212 7.3E-77 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VF_1194 b72dd0279bc535fa0f1b8896a32ef095 217 Pfam PF00753 Metallo-beta-lactamase superfamily 15 194 6.0E-29 T 10-10-2018 IPR001279 Metallo-beta-lactamase VF_1194 b72dd0279bc535fa0f1b8896a32ef095 217 SUPERFAMILY SSF56281 4 210 7.99E-57 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VF_1194 b72dd0279bc535fa0f1b8896a32ef095 217 SMART SM00849 14 194 1.8E-37 T 10-10-2018 IPR001279 Metallo-beta-lactamase VF_2097 a5dbb4f129d9703d433ff69e734d6f73 318 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 182 245 7.4E-25 T 10-10-2018 IPR017703 YgfZ/GcvT conserved site VF_2097 a5dbb4f129d9703d433ff69e734d6f73 318 SUPERFAMILY SSF103025 18 235 6.28E-55 T 10-10-2018 VF_2097 a5dbb4f129d9703d433ff69e734d6f73 318 Gene3D G3DSA:3.30.70.1400 28 114 4.1E-39 T 10-10-2018 VF_2097 a5dbb4f129d9703d433ff69e734d6f73 318 Hamap MF_01175 tRNA-modifying protein YgfZ [ygfZ]. 1 312 44.497 T 10-10-2018 IPR023758 tRNA-modifying protein YgfZ GO:0005542|GO:0009451 VF_2097 a5dbb4f129d9703d433ff69e734d6f73 318 Gene3D G3DSA:2.40.30.160 190 310 3.5E-38 T 10-10-2018 VF_2097 a5dbb4f129d9703d433ff69e734d6f73 318 Gene3D G3DSA:3.30.70.1630 25 185 4.1E-39 T 10-10-2018 VF_2097 a5dbb4f129d9703d433ff69e734d6f73 318 SUPERFAMILY SSF101790 237 316 9.81E-22 T 10-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal VF_A0340 abbc7d9cec867b57d68853a1ca14176d 474 PIRSF PIRSF006060 1 472 3.8E-38 T 10-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VF_A0340 abbc7d9cec867b57d68853a1ca14176d 474 Pfam PF13520 Amino acid permease 12 443 3.0E-31 T 10-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VF_A0340 abbc7d9cec867b57d68853a1ca14176d 474 Gene3D G3DSA:1.20.1740.10 12 473 2.6E-7 T 10-10-2018 VF_A1159 96df356bd4e778d7809eac8a059b0070 397 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 6 382 2.4E-91 T 10-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 VF_A1159 96df356bd4e778d7809eac8a059b0070 397 SUPERFAMILY SSF103473 5 391 5.62E-56 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A1159 96df356bd4e778d7809eac8a059b0070 397 Pfam PF07690 Major Facilitator Superfamily 16 349 1.1E-39 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_A1159 96df356bd4e778d7809eac8a059b0070 397 Gene3D G3DSA:1.20.1720.10 10 383 1.3E-73 T 10-10-2018 VF_1225 5ba02d170999bf5ea1e083a5a043399a 254 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 176 253 4.1E-22 T 10-10-2018 IPR037682 TonB, C-terminal GO:0055085 VF_1225 5ba02d170999bf5ea1e083a5a043399a 254 SUPERFAMILY SSF74653 175 251 2.22E-22 T 10-10-2018 VF_1225 5ba02d170999bf5ea1e083a5a043399a 254 Gene3D G3DSA:3.30.1150.10 122 254 4.7E-23 T 10-10-2018 VF_1225 5ba02d170999bf5ea1e083a5a043399a 254 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 177 254 6.1E-23 T 10-10-2018 IPR006260 TonB/TolA, C-terminal VF_A0145 8e10d5f502281033edf880c348defbea 163 Gene3D G3DSA:3.30.2010.10 74 161 7.9E-6 T 10-10-2018 VF_A0145 8e10d5f502281033edf880c348defbea 163 Pfam PF01863 Protein of unknown function DUF45 91 149 2.7E-11 T 10-10-2018 IPR002725 Protein of unknown function DUF45 VF_2237 9bcd8e97088a9913607858e84fdf40b1 254 SUPERFAMILY SSF81324 13 210 6.42E-49 T 10-10-2018 VF_2237 9bcd8e97088a9913607858e84fdf40b1 254 Gene3D G3DSA:1.20.120.350 7 119 3.1E-17 T 10-10-2018 IPR027359 Voltage-dependent channel domain superfamily VF_2237 9bcd8e97088a9913607858e84fdf40b1 254 PRINTS PR00169 Potassium channel signature 182 208 4.2E-7 T 10-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VF_2237 9bcd8e97088a9913607858e84fdf40b1 254 PRINTS PR00169 Potassium channel signature 153 175 4.2E-7 T 10-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VF_2237 9bcd8e97088a9913607858e84fdf40b1 254 PRINTS PR00169 Potassium channel signature 45 68 4.2E-7 T 10-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VF_2237 9bcd8e97088a9913607858e84fdf40b1 254 Pfam PF00520 Ion transport protein 16 210 9.2E-21 T 10-10-2018 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 VF_2237 9bcd8e97088a9913607858e84fdf40b1 254 Gene3D G3DSA:1.10.287.70 120 172 4.4E-16 T 10-10-2018 VF_2237 9bcd8e97088a9913607858e84fdf40b1 254 Gene3D G3DSA:1.20.5.110 174 218 2.2E-9 T 10-10-2018 VF_0735 33b2954e123d4365afae18d85d12edd7 403 SUPERFAMILY SSF50621 267 402 5.23E-38 T 10-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VF_0735 33b2954e123d4365afae18d85d12edd7 403 TIGRFAM TIGR00492 alr: alanine racemase 40 390 3.9E-66 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0735 33b2954e123d4365afae18d85d12edd7 403 Hamap MF_01201 Alanine racemase. 37 403 24.357 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0735 33b2954e123d4365afae18d85d12edd7 403 Gene3D G3DSA:3.20.20.10 46 263 3.1E-128 T 10-10-2018 IPR029066 PLP-binding barrel VF_0735 33b2954e123d4365afae18d85d12edd7 403 SUPERFAMILY SSF51419 44 278 2.62E-44 T 10-10-2018 IPR029066 PLP-binding barrel VF_0735 33b2954e123d4365afae18d85d12edd7 403 PRINTS PR00992 Alanine racemase signature 99 117 5.5E-29 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0735 33b2954e123d4365afae18d85d12edd7 403 PRINTS PR00992 Alanine racemase signature 197 208 5.5E-29 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0735 33b2954e123d4365afae18d85d12edd7 403 PRINTS PR00992 Alanine racemase signature 63 79 5.5E-29 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0735 33b2954e123d4365afae18d85d12edd7 403 PRINTS PR00992 Alanine racemase signature 240 267 5.5E-29 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0735 33b2954e123d4365afae18d85d12edd7 403 PRINTS PR00992 Alanine racemase signature 329 346 5.5E-29 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0735 33b2954e123d4365afae18d85d12edd7 403 PRINTS PR00992 Alanine racemase signature 308 323 5.5E-29 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0735 33b2954e123d4365afae18d85d12edd7 403 SMART SM01005 275 403 3.5E-42 T 10-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0735 33b2954e123d4365afae18d85d12edd7 403 Pfam PF01168 Alanine racemase, N-terminal domain 44 267 8.8E-46 T 10-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0735 33b2954e123d4365afae18d85d12edd7 403 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 68 78 - T 10-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_0735 33b2954e123d4365afae18d85d12edd7 403 Gene3D G3DSA:2.40.37.10 40 399 3.1E-128 T 10-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VF_0735 33b2954e123d4365afae18d85d12edd7 403 Pfam PF00842 Alanine racemase, C-terminal domain 276 396 7.4E-29 T 10-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VF_2462 85cafce365175178219677129b858844 272 Pfam PF00459 Inositol monophosphatase family 11 251 4.5E-47 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VF_2462 85cafce365175178219677129b858844 272 Gene3D G3DSA:3.40.190.80 158 262 2.4E-26 T 10-10-2018 VF_2462 85cafce365175178219677129b858844 272 SUPERFAMILY SSF56655 6 263 5.63E-73 T 10-10-2018 VF_2462 85cafce365175178219677129b858844 272 Gene3D G3DSA:3.30.540.10 5 157 6.2E-41 T 10-10-2018 VF_2462 85cafce365175178219677129b858844 272 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 8 260 38.17 T 10-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 VF_2462 85cafce365175178219677129b858844 272 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 9 258 5.3E-101 T 10-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 VF_0215 6f002f035eec199ac9fbc7c96e303b0c 86 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 7 70 6.0E-31 T 10-10-2018 IPR010648 Uncharacterised protein family UPF0270 VF_0215 6f002f035eec199ac9fbc7c96e303b0c 86 PIRSF PIRSF006169 7 82 1.1E-32 T 10-10-2018 IPR010648 Uncharacterised protein family UPF0270 VF_0215 6f002f035eec199ac9fbc7c96e303b0c 86 SUPERFAMILY SSF118001 6 79 9.29E-28 T 10-10-2018 IPR036685 YehU-like superfamily VF_0215 6f002f035eec199ac9fbc7c96e303b0c 86 Pfam PF06794 Uncharacterised protein family (UPF0270) 7 74 2.2E-31 T 10-10-2018 IPR010648 Uncharacterised protein family UPF0270 VF_0215 6f002f035eec199ac9fbc7c96e303b0c 86 Gene3D G3DSA:1.10.10.610 5 82 2.5E-27 T 10-10-2018 IPR036685 YehU-like superfamily VF_0215 6f002f035eec199ac9fbc7c96e303b0c 86 Hamap MF_00690 UPF0270 protein YheU [yheU]. 7 76 23.311 T 10-10-2018 IPR010648 Uncharacterised protein family UPF0270 VF_1984 a7b38c3c9ffb24375e01abdabb3b6117 511 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 243 503 1.2E-74 T 10-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 VF_1984 a7b38c3c9ffb24375e01abdabb3b6117 511 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 279 430 4.8E-17 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_1984 a7b38c3c9ffb24375e01abdabb3b6117 511 SUPERFAMILY SSF161098 223 493 1.83E-37 T 10-10-2018 IPR035906 MetI-like superfamily VF_1984 a7b38c3c9ffb24375e01abdabb3b6117 511 Gene3D G3DSA:1.10.3720.10 244 506 1.0E-31 T 10-10-2018 IPR035906 MetI-like superfamily VF_1660 72f99c6f5b41d37dd22837613264b8cc 146 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 1 144 39.731 T 10-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 VF_1660 72f99c6f5b41d37dd22837613264b8cc 146 Pfam PF03692 Putative zinc- or iron-chelating domain 23 91 8.9E-8 T 10-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein VF_1660 72f99c6f5b41d37dd22837613264b8cc 146 PIRSF PIRSF006173 1 144 1.2E-63 T 10-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 VF_0002 6c005f0d1be705e41adf800a71428464 455 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 6 455 33.114 T 10-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 VF_0002 6c005f0d1be705e41adf800a71428464 455 Pfam PF10396 GTP-binding protein TrmE N-terminus 7 121 1.5E-35 T 10-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 VF_0002 6c005f0d1be705e41adf800a71428464 455 Gene3D G3DSA:3.30.1360.120 1 122 1.2E-39 T 10-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 VF_0002 6c005f0d1be705e41adf800a71428464 455 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 220 240 7.4E-5 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0002 6c005f0d1be705e41adf800a71428464 455 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 269 284 7.4E-5 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0002 6c005f0d1be705e41adf800a71428464 455 Gene3D G3DSA:3.40.50.300 218 383 1.3E-102 T 10-10-2018 VF_0002 6c005f0d1be705e41adf800a71428464 455 Pfam PF12631 MnmE helical domain 124 452 1.2E-60 T 10-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 VF_0002 6c005f0d1be705e41adf800a71428464 455 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 12 455 4.5E-102 T 10-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 VF_0002 6c005f0d1be705e41adf800a71428464 455 SUPERFAMILY SSF116878 122 455 4.05E-52 T 10-10-2018 VF_0002 6c005f0d1be705e41adf800a71428464 455 Pfam PF01926 50S ribosome-binding GTPase 219 307 1.0E-23 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_0002 6c005f0d1be705e41adf800a71428464 455 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 217 372 8.6E-23 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VF_0002 6c005f0d1be705e41adf800a71428464 455 SUPERFAMILY SSF52540 72 373 1.7E-43 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0002 6c005f0d1be705e41adf800a71428464 455 Gene3D G3DSA:1.20.120.430 123 455 1.3E-102 T 10-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 VF_1867 1a943269c61c4ab04eb11eb0246cf99b 397 Gene3D G3DSA:1.20.1330.10 269 373 5.6E-12 T 10-10-2018 VF_1867 1a943269c61c4ab04eb11eb0246cf99b 397 Pfam PF00700 Bacterial flagellin C-terminal helical region 320 396 3.0E-7 T 10-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VF_1867 1a943269c61c4ab04eb11eb0246cf99b 397 Gene3D G3DSA:1.20.1330.10 42 222 3.9E-33 T 10-10-2018 VF_1867 1a943269c61c4ab04eb11eb0246cf99b 397 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 4 397 2.9E-88 T 10-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 VF_1867 1a943269c61c4ab04eb11eb0246cf99b 397 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 142 8.5E-13 T 10-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VF_1867 1a943269c61c4ab04eb11eb0246cf99b 397 SUPERFAMILY SSF64518 1 396 8.11E-65 T 10-10-2018 VF_0729 9f4602994fdbfa1b9de058619c002622 198 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 196 6.0E-59 T 10-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VF_0729 9f4602994fdbfa1b9de058619c002622 198 PIRSF PIRSF006102 1 198 2.6E-64 T 10-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VF_0729 9f4602994fdbfa1b9de058619c002622 198 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 198 29.95 T 10-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 VF_0729 9f4602994fdbfa1b9de058619c002622 198 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 2 197 5.0E-107 T 10-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 VF_A1047 eea9202b86ebce5f4dc5639ec7923773 387 SUPERFAMILY SSF54631 76 211 1.21E-11 T 10-10-2018 VF_A1047 eea9202b86ebce5f4dc5639ec7923773 387 SUPERFAMILY SSF161093 215 385 8.24E-47 T 10-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 VF_A1047 eea9202b86ebce5f4dc5639ec7923773 387 Gene3D G3DSA:3.10.580.10 72 197 3.7E-30 T 10-10-2018 VF_A1047 eea9202b86ebce5f4dc5639ec7923773 387 Gene3D G3DSA:1.10.357.20 213 386 1.9E-45 T 10-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain VF_A1047 eea9202b86ebce5f4dc5639ec7923773 387 Pfam PF01769 Divalent cation transporter 258 379 1.5E-22 T 10-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 VF_2210 0e9263269bcf641be346d2bb285c11d8 309 Gene3D G3DSA:3.40.1010.10 19 142 3.0E-47 T 10-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 VF_2210 0e9263269bcf641be346d2bb285c11d8 309 SUPERFAMILY SSF53790 35 254 3.01E-85 T 10-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 VF_2210 0e9263269bcf641be346d2bb285c11d8 309 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 35 256 38.543 T 10-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 VF_2210 0e9263269bcf641be346d2bb285c11d8 309 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 35 235 1.5E-29 T 10-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 VF_2210 0e9263269bcf641be346d2bb285c11d8 309 PIRSF PIRSF005917 23 308 8.8E-108 T 10-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 VF_2210 0e9263269bcf641be346d2bb285c11d8 309 Gene3D G3DSA:3.30.950.10 143 263 7.0E-45 T 10-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 VF_2210 0e9263269bcf641be346d2bb285c11d8 309 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 36 307 1.7E-102 T 10-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 VF_2210 0e9263269bcf641be346d2bb285c11d8 309 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 113 124 - T 10-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 VF_1758 03c28a6c6b27d31302ebdfa04f467e1b 93 Gene3D G3DSA:4.10.520.10 2 38 1.6E-7 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VF_1758 03c28a6c6b27d31302ebdfa04f467e1b 93 Gene3D G3DSA:4.10.520.10 40 91 3.3E-28 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VF_1758 03c28a6c6b27d31302ebdfa04f467e1b 93 Pfam PF00216 Bacterial DNA-binding protein 1 91 6.7E-29 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_1758 03c28a6c6b27d31302ebdfa04f467e1b 93 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 92 5.8E-47 T 10-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 VF_1758 03c28a6c6b27d31302ebdfa04f467e1b 93 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 10-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 VF_1758 03c28a6c6b27d31302ebdfa04f467e1b 93 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 3.4E-18 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_1758 03c28a6c6b27d31302ebdfa04f467e1b 93 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 3.4E-18 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_1758 03c28a6c6b27d31302ebdfa04f467e1b 93 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 3.4E-18 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_1758 03c28a6c6b27d31302ebdfa04f467e1b 93 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 93 29.749 T 10-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 VF_1758 03c28a6c6b27d31302ebdfa04f467e1b 93 SMART SM00411 1 91 7.1E-40 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_1758 03c28a6c6b27d31302ebdfa04f467e1b 93 SUPERFAMILY SSF47729 1 91 1.47E-29 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VF_2343 f83148afdc77da04a4e2cb58d2b57acd 227 Gene3D G3DSA:3.40.50.2300 1 126 5.5E-38 T 10-10-2018 VF_2343 f83148afdc77da04a4e2cb58d2b57acd 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 224 3.0E-18 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_2343 f83148afdc77da04a4e2cb58d2b57acd 227 SUPERFAMILY SSF52172 1 122 2.13E-40 T 10-10-2018 IPR011006 CheY-like superfamily VF_2343 f83148afdc77da04a4e2cb58d2b57acd 227 SMART SM00862 148 224 4.4E-20 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_2343 f83148afdc77da04a4e2cb58d2b57acd 227 Gene3D G3DSA:1.10.10.10 127 227 9.8E-26 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2343 f83148afdc77da04a4e2cb58d2b57acd 227 SMART SM00448 2 111 1.9E-43 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_2343 f83148afdc77da04a4e2cb58d2b57acd 227 SUPERFAMILY SSF46894 123 225 8.22E-23 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_2343 f83148afdc77da04a4e2cb58d2b57acd 227 Pfam PF00072 Response regulator receiver domain 4 112 1.1E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0392 37540a2bf8114142961d7a01ce57e315 264 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 61 155 1.0E-23 T 10-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VF_A0392 37540a2bf8114142961d7a01ce57e315 264 Gene3D G3DSA:1.10.3720.10 56 263 3.9E-49 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0392 37540a2bf8114142961d7a01ce57e315 264 SUPERFAMILY SSF161098 61 249 1.15E-41 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0392 37540a2bf8114142961d7a01ce57e315 264 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 260 1.9E-18 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_A0469 3e2179e5075419ff26d3c229a7e3ac31 240 SUPERFAMILY SSF100950 3 237 9.77E-62 T 10-10-2018 IPR037171 NagB/RpiA transferase-like VF_A0469 3e2179e5075419ff26d3c229a7e3ac31 240 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 12 236 9.0E-54 T 10-10-2018 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 VF_A0469 3e2179e5075419ff26d3c229a7e3ac31 240 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 11 227 1.0E-60 T 10-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 VF_A0469 3e2179e5075419ff26d3c229a7e3ac31 240 Gene3D G3DSA:3.40.50.1360 1 238 5.6E-86 T 10-10-2018 VF_1838 14cdd6f0075248ba0d05dacbdafef338 225 SUPERFAMILY SSF141371 8 116 7.46E-30 T 10-10-2018 VF_1838 14cdd6f0075248ba0d05dacbdafef338 225 SUPERFAMILY SSF141371 118 211 1.2E-9 T 10-10-2018 VF_1838 14cdd6f0075248ba0d05dacbdafef338 225 Gene3D G3DSA:2.30.110.10 3 114 2.0E-23 T 10-10-2018 IPR012349 FMN-binding split barrel GO:0048037 VF_1838 14cdd6f0075248ba0d05dacbdafef338 225 Pfam PF12945 Flagellar protein YcgR 18 107 2.4E-13 T 10-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal VF_1838 14cdd6f0075248ba0d05dacbdafef338 225 Gene3D G3DSA:2.40.10.220 115 216 2.9E-9 T 10-10-2018 VF_1838 14cdd6f0075248ba0d05dacbdafef338 225 Pfam PF07238 PilZ domain 116 210 8.4E-12 T 10-10-2018 IPR009875 PilZ domain GO:0035438 VF_1200 fec55b8ebf56acabba3243b943f2839d 691 Pfam PF13185 GAF domain 374 508 1.6E-6 T 10-10-2018 IPR003018 GAF domain GO:0005515 VF_1200 fec55b8ebf56acabba3243b943f2839d 691 SUPERFAMILY SSF55073 525 681 2.2E-38 T 10-10-2018 IPR029787 Nucleotide cyclase VF_1200 fec55b8ebf56acabba3243b943f2839d 691 SUPERFAMILY SSF48452 50 235 2.66E-11 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1200 fec55b8ebf56acabba3243b943f2839d 691 SMART SM00267 509 683 4.4E-47 T 10-10-2018 IPR000160 GGDEF domain VF_1200 fec55b8ebf56acabba3243b943f2839d 691 Gene3D G3DSA:3.30.70.270 511 681 6.1E-45 T 10-10-2018 VF_1200 fec55b8ebf56acabba3243b943f2839d 691 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 518 681 7.8E-38 T 10-10-2018 IPR000160 GGDEF domain VF_1200 fec55b8ebf56acabba3243b943f2839d 691 SUPERFAMILY SSF55781 351 515 3.27E-13 T 10-10-2018 VF_1200 fec55b8ebf56acabba3243b943f2839d 691 SMART SM00028 126 159 0.16 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1200 fec55b8ebf56acabba3243b943f2839d 691 SMART SM00028 87 120 29.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1200 fec55b8ebf56acabba3243b943f2839d 691 Gene3D G3DSA:1.25.40.10 50 342 5.0E-18 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1200 fec55b8ebf56acabba3243b943f2839d 691 Gene3D G3DSA:3.30.450.40 348 510 2.3E-15 T 10-10-2018 IPR029016 GAF-like domain superfamily VF_1200 fec55b8ebf56acabba3243b943f2839d 691 Pfam PF00990 Diguanylate cyclase, GGDEF domain 521 678 6.1E-40 T 10-10-2018 IPR000160 GGDEF domain VF_0927 b58095f617ddd0c2ac99484b0310624e 144 ProDom PD087558 YRN2_VIBPA ORF2 VV1184 VV13101 MOTY 3'REGION VC1009 VP2110 1 143 1.0E-80 T 10-10-2018 IPR020206 Uncharacterised protein family, VP2110 VF_0927 b58095f617ddd0c2ac99484b0310624e 144 Pfam PF10952 Protein of unknown function (DUF2753) 5 144 3.2E-76 T 10-10-2018 IPR020206 Uncharacterised protein family, VP2110 VF_A0384 eb912bdce73c6c9c093c8f9c2cb7d7b6 634 Pfam PF00271 Helicase conserved C-terminal domain 232 340 6.6E-31 T 10-10-2018 IPR001650 Helicase, C-terminal VF_A0384 eb912bdce73c6c9c093c8f9c2cb7d7b6 634 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 10-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VF_A0384 eb912bdce73c6c9c093c8f9c2cb7d7b6 634 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 1 567 43.18 T 10-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 VF_A0384 eb912bdce73c6c9c093c8f9c2cb7d7b6 634 Gene3D G3DSA:3.40.50.300 1 211 1.0E-72 T 10-10-2018 VF_A0384 eb912bdce73c6c9c093c8f9c2cb7d7b6 634 SUPERFAMILY SSF52540 74 361 6.89E-74 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0384 eb912bdce73c6c9c093c8f9c2cb7d7b6 634 Gene3D G3DSA:3.40.50.300 215 434 3.8E-54 T 10-10-2018 VF_A0384 eb912bdce73c6c9c093c8f9c2cb7d7b6 634 Gene3D G3DSA:3.30.70.330 486 557 5.8E-10 T 10-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VF_A0384 eb912bdce73c6c9c093c8f9c2cb7d7b6 634 Pfam PF00270 DEAD/DEAH box helicase 30 196 1.1E-49 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VF_A0384 eb912bdce73c6c9c093c8f9c2cb7d7b6 634 Pfam PF03880 DbpA RNA binding domain 485 553 4.2E-16 T 10-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain VF_A0384 eb912bdce73c6c9c093c8f9c2cb7d7b6 634 SMART SM00490 259 340 3.1E-36 T 10-10-2018 IPR001650 Helicase, C-terminal VF_A0384 eb912bdce73c6c9c093c8f9c2cb7d7b6 634 SMART SM00487 25 223 1.8E-58 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VF_0752 6b4143b9eff4a177aeeeb6bbfc4216e8 185 Gene3D G3DSA:3.30.160.150 1 151 1.2E-51 T 10-10-2018 VF_0752 6b4143b9eff4a177aeeeb6bbfc4216e8 185 Pfam PF04390 Lipopolysaccharide-assembly 20 142 5.1E-14 T 10-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 VF_0752 6b4143b9eff4a177aeeeb6bbfc4216e8 185 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 1 147 21.904 T 10-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 VF_A0643 b0f81eae49c4b4f868d59a4cdfec83ca 262 Pfam PF01636 Phosphotransferase enzyme family 112 175 1.8E-11 T 10-10-2018 IPR002575 Aminoglycoside phosphotransferase VF_A0643 b0f81eae49c4b4f868d59a4cdfec83ca 262 SUPERFAMILY SSF56112 2 212 9.21E-27 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily VF_A0643 b0f81eae49c4b4f868d59a4cdfec83ca 262 Gene3D G3DSA:3.90.1200.10 87 229 2.2E-11 T 10-10-2018 VF_1377 f583a337c47888beaad97dc4976dc7b6 266 Hamap MF_01830 Putative hydro-lyase . 11 265 51.831 T 10-10-2018 IPR016938 Uncharacterised protein family UPF0317 VF_1377 f583a337c47888beaad97dc4976dc7b6 266 Gene3D G3DSA:3.40.1640.10 20 253 6.5E-93 T 10-10-2018 VF_1377 f583a337c47888beaad97dc4976dc7b6 266 Pfam PF07286 Protein of unknown function (DUF1445) 115 257 1.2E-64 T 10-10-2018 IPR009906 D-glutamate cyclase VF_1377 f583a337c47888beaad97dc4976dc7b6 266 PIRSF PIRSF029755 2 266 2.3E-123 T 10-10-2018 IPR016938 Uncharacterised protein family UPF0317 VF_1377 f583a337c47888beaad97dc4976dc7b6 266 Gene3D G3DSA:3.30.2040.10 125 237 6.5E-93 T 10-10-2018 VF_1377 f583a337c47888beaad97dc4976dc7b6 266 SUPERFAMILY SSF160920 8 257 1.23E-107 T 10-10-2018 IPR038021 Putative hydro-lyase VF_0541 d4244ce22dc5a175b6afc2899f1ba83b 164 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 33 144 0.001 T 10-10-2018 IPR020143 Uncharacterised protein family, RP436 VF_0541 d4244ce22dc5a175b6afc2899f1ba83b 164 Pfam PF09335 SNARE associated Golgi protein 63 158 1.9E-13 T 10-10-2018 IPR032816 SNARE associated Golgi protein VF_0175 22ea2897e1d7508e97206432e0f42d39 271 Gene3D G3DSA:3.90.550.10 2 248 7.1E-30 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0175 22ea2897e1d7508e97206432e0f42d39 271 Pfam PF00535 Glycosyl transferase family 2 22 128 1.1E-10 T 10-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VF_0175 22ea2897e1d7508e97206432e0f42d39 271 SUPERFAMILY SSF53448 4 269 4.03E-33 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_A0552 cf2285632a2ef8fc47eaf4a27ab4ab93 275 Pfam PF10977 Protein of unknown function (DUF2797) 39 271 1.4E-92 T 10-10-2018 IPR021246 Protein of unknown function DUF2797 VF_1299 4ca219a05c29a194b3e13ff99929dbac 476 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 15 445 4.1E-115 T 10-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_1299 4ca219a05c29a194b3e13ff99929dbac 476 SUPERFAMILY SSF81442 11 465 1.83E-123 T 10-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_1299 4ca219a05c29a194b3e13ff99929dbac 476 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 9 467 6.3E-230 T 10-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 VF_1299 4ca219a05c29a194b3e13ff99929dbac 476 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 205 260 - T 10-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_1299 4ca219a05c29a194b3e13ff99929dbac 476 Gene3D G3DSA:1.20.210.10 4 472 2.5E-205 T 10-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_1426 37b95b1095cb1769ae9affbabbab1c72 758 Gene3D G3DSA:1.10.1130.10 126 286 2.0E-15 T 10-10-2018 VF_1426 37b95b1095cb1769ae9affbabbab1c72 758 SUPERFAMILY SSF48695 29 568 1.14E-80 T 10-10-2018 IPR036280 Multiheme cytochrome superfamily VF_1426 37b95b1095cb1769ae9affbabbab1c72 758 SMART SM00028 577 610 0.03 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1426 37b95b1095cb1769ae9affbabbab1c72 758 SMART SM00028 611 644 1.4 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1426 37b95b1095cb1769ae9affbabbab1c72 758 SMART SM00028 645 678 14.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1426 37b95b1095cb1769ae9affbabbab1c72 758 Pfam PF13435 Cytochrome c554 and c-prime 166 205 2.7E-4 T 10-10-2018 IPR023155 Cytochrome c-552/4 VF_1426 37b95b1095cb1769ae9affbabbab1c72 758 Pfam PF13435 Cytochrome c554 and c-prime 35 61 0.014 T 10-10-2018 IPR023155 Cytochrome c-552/4 VF_1426 37b95b1095cb1769ae9affbabbab1c72 758 Gene3D G3DSA:1.25.40.10 565 749 7.3E-20 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1426 37b95b1095cb1769ae9affbabbab1c72 758 Gene3D G3DSA:3.90.10.10 297 421 6.9E-8 T 10-10-2018 VF_1426 37b95b1095cb1769ae9affbabbab1c72 758 Pfam PF13181 Tetratricopeptide repeat 582 608 0.13 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1426 37b95b1095cb1769ae9affbabbab1c72 758 Pfam PF13181 Tetratricopeptide repeat 612 643 0.0033 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_1426 37b95b1095cb1769ae9affbabbab1c72 758 SUPERFAMILY SSF48452 571 697 2.4E-19 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1026 feb6a71398d8cc7e1a2d75c81792d52b 418 SUPERFAMILY SSF118215 13 400 3.01E-109 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VF_1026 feb6a71398d8cc7e1a2d75c81792d52b 418 PRINTS PR00173 Glutamate-aspartate symporter signature 356 376 8.4E-47 T 10-10-2018 VF_1026 feb6a71398d8cc7e1a2d75c81792d52b 418 PRINTS PR00173 Glutamate-aspartate symporter signature 9 29 8.4E-47 T 10-10-2018 VF_1026 feb6a71398d8cc7e1a2d75c81792d52b 418 PRINTS PR00173 Glutamate-aspartate symporter signature 76 101 8.4E-47 T 10-10-2018 VF_1026 feb6a71398d8cc7e1a2d75c81792d52b 418 PRINTS PR00173 Glutamate-aspartate symporter signature 330 349 8.4E-47 T 10-10-2018 VF_1026 feb6a71398d8cc7e1a2d75c81792d52b 418 PRINTS PR00173 Glutamate-aspartate symporter signature 193 212 8.4E-47 T 10-10-2018 VF_1026 feb6a71398d8cc7e1a2d75c81792d52b 418 PRINTS PR00173 Glutamate-aspartate symporter signature 295 321 8.4E-47 T 10-10-2018 VF_1026 feb6a71398d8cc7e1a2d75c81792d52b 418 PRINTS PR00173 Glutamate-aspartate symporter signature 145 167 8.4E-47 T 10-10-2018 VF_1026 feb6a71398d8cc7e1a2d75c81792d52b 418 PRINTS PR00173 Glutamate-aspartate symporter signature 228 247 8.4E-47 T 10-10-2018 VF_1026 feb6a71398d8cc7e1a2d75c81792d52b 418 Pfam PF00375 Sodium:dicarboxylate symporter family 13 401 4.4E-119 T 10-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VF_1026 feb6a71398d8cc7e1a2d75c81792d52b 418 Gene3D G3DSA:1.10.3860.10 2 418 1.2E-117 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VF_A0764 5e70d8886332fa0b5ce1c5bcd5cb69a2 155 SUPERFAMILY SSF54427 10 141 1.94E-17 T 10-10-2018 IPR032710 NTF2-like domain superfamily VF_A0764 5e70d8886332fa0b5ce1c5bcd5cb69a2 155 Gene3D G3DSA:3.10.450.50 14 140 3.7E-16 T 10-10-2018 VF_A0764 5e70d8886332fa0b5ce1c5bcd5cb69a2 155 Pfam PF12680 SnoaL-like domain 22 120 6.6E-11 T 10-10-2018 IPR037401 SnoaL-like domain VF_A0455 bb39fb05b4c9be77ea255a9c14d0d3aa 212 SUPERFAMILY SSF53335 50 157 1.81E-16 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_A0455 bb39fb05b4c9be77ea255a9c14d0d3aa 212 Gene3D G3DSA:3.40.50.150 15 180 6.7E-16 T 10-10-2018 VF_A0455 bb39fb05b4c9be77ea255a9c14d0d3aa 212 Pfam PF13649 Methyltransferase domain 60 149 1.4E-11 T 10-10-2018 VF_1949 774b8bd30fe1906188e5e11352cb0a61 383 SUPERFAMILY SSF53756 6 377 4.54E-27 T 10-10-2018 VF_1949 774b8bd30fe1906188e5e11352cb0a61 383 Pfam PF02684 Lipid-A-disaccharide synthetase 7 373 2.7E-128 T 10-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 VF_1949 774b8bd30fe1906188e5e11352cb0a61 383 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 2 376 9.4E-138 T 10-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 VF_1949 774b8bd30fe1906188e5e11352cb0a61 383 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 4 378 41.639 T 10-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 VF_1732 7d2a4b79219cbd14471edce128d9723a 475 Gene3D G3DSA:3.30.1360.60 395 475 1.9E-29 T 10-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VF_1732 7d2a4b79219cbd14471edce128d9723a 475 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 473 3.9E-197 T 10-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 VF_1732 7d2a4b79219cbd14471edce128d9723a 475 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 376 458 1.4E-21 T 10-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 VF_1732 7d2a4b79219cbd14471edce128d9723a 475 SUPERFAMILY SSF55604 399 472 3.53E-20 T 10-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VF_1732 7d2a4b79219cbd14471edce128d9723a 475 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 412 429 - T 10-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VF_1732 7d2a4b79219cbd14471edce128d9723a 475 Pfam PF00367 phosphotransferase system, EIIB 402 434 8.2E-13 T 10-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VF_1732 7d2a4b79219cbd14471edce128d9723a 475 Pfam PF02378 Phosphotransferase system, EIIC 13 318 9.4E-73 T 10-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VF_1186 a4ad6461dad180e5da460cc4e88fcdf4 396 SUPERFAMILY SSF53383 23 388 4.49E-99 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_1186 a4ad6461dad180e5da460cc4e88fcdf4 396 PIRSF PIRSF001434 1 391 4.3E-123 T 10-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VF_1186 a4ad6461dad180e5da460cc4e88fcdf4 396 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 199 213 - T 10-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VF_1186 a4ad6461dad180e5da460cc4e88fcdf4 396 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 387 5.9E-115 T 10-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VF_1186 a4ad6461dad180e5da460cc4e88fcdf4 396 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 7 389 2.0E-167 T 10-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 VF_1186 a4ad6461dad180e5da460cc4e88fcdf4 396 Gene3D G3DSA:3.90.1150.10 256 390 5.3E-40 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_1186 a4ad6461dad180e5da460cc4e88fcdf4 396 Gene3D G3DSA:3.40.640.10 1 255 1.3E-77 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_A0791 c8490bd2a75b919b8ba092e260b37e17 302 SUPERFAMILY SSF46785 8 113 2.95E-16 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0791 c8490bd2a75b919b8ba092e260b37e17 302 Gene3D G3DSA:3.40.190.290 92 298 1.1E-40 T 10-10-2018 VF_A0791 c8490bd2a75b919b8ba092e260b37e17 302 Pfam PF03466 LysR substrate binding domain 91 299 1.4E-27 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0791 c8490bd2a75b919b8ba092e260b37e17 302 Gene3D G3DSA:1.10.10.10 6 90 2.1E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0791 c8490bd2a75b919b8ba092e260b37e17 302 SUPERFAMILY SSF53850 91 301 1.71E-29 T 10-10-2018 VF_A0791 c8490bd2a75b919b8ba092e260b37e17 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 64 1.0E-13 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0712 afc5db09bfc04ae7539ec1f9f0505caa 301 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 220 232 - T 10-10-2018 IPR033749 Polyprenyl synthetase, conserved site VF_0712 afc5db09bfc04ae7539ec1f9f0505caa 301 Gene3D G3DSA:1.10.600.10 2 301 9.4E-106 T 10-10-2018 IPR008949 Isoprenoid synthase domain superfamily VF_0712 afc5db09bfc04ae7539ec1f9f0505caa 301 Pfam PF00348 Polyprenyl synthetase 35 274 2.7E-57 T 10-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 VF_0712 afc5db09bfc04ae7539ec1f9f0505caa 301 SUPERFAMILY SSF48576 9 294 1.87E-85 T 10-10-2018 IPR008949 Isoprenoid synthase domain superfamily VF_0712 afc5db09bfc04ae7539ec1f9f0505caa 301 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 86 102 - T 10-10-2018 IPR033749 Polyprenyl synthetase, conserved site VF_A1044 37f120a3941186b105db70a0d5e4be06 204 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 27 37 - T 10-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 VF_A1044 37f120a3941186b105db70a0d5e4be06 204 SUPERFAMILY SSF52266 26 203 1.05E-49 T 10-10-2018 VF_A1044 37f120a3941186b105db70a0d5e4be06 204 Gene3D G3DSA:3.40.50.1110 24 204 5.5E-66 T 10-10-2018 IPR036514 SGNH hydrolase superfamily VF_A1044 37f120a3941186b105db70a0d5e4be06 204 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 30 187 8.6E-22 T 10-10-2018 IPR013830 SGNH hydrolase-type esterase domain VF_2169 ffc4bfee68ddbf97037ba7c4088bff8b 264 PIRSF PIRSF000388 1 264 6.2E-101 T 10-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VF_2169 ffc4bfee68ddbf97037ba7c4088bff8b 264 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1 263 1.3E-111 T 10-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VF_2169 ffc4bfee68ddbf97037ba7c4088bff8b 264 Gene3D G3DSA:3.20.20.60 1 264 3.7E-105 T 10-10-2018 VF_2169 ffc4bfee68ddbf97037ba7c4088bff8b 264 SUPERFAMILY SSF51621 3 263 4.08E-105 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VF_2169 ffc4bfee68ddbf97037ba7c4088bff8b 264 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 263 41.35 T 10-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VF_2169 ffc4bfee68ddbf97037ba7c4088bff8b 264 Pfam PF02548 Ketopantoate hydroxymethyltransferase 3 257 3.8E-107 T 10-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VF_0919 610df81d52d4a6069c21c4e121542262 223 SUPERFAMILY SSF51735 6 197 2.46E-23 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0919 610df81d52d4a6069c21c4e121542262 223 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 198 4.4E-15 T 10-10-2018 VF_0919 610df81d52d4a6069c21c4e121542262 223 Gene3D G3DSA:3.40.50.720 1 222 3.2E-23 T 10-10-2018 VF_1191 2a6bddf894a8bcb462a513c1ae1480e1 467 Gene3D G3DSA:1.10.760.10 321 467 5.3E-7 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_1191 2a6bddf894a8bcb462a513c1ae1480e1 467 PIRSF PIRSF028099 4 467 1.8E-186 T 10-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase VF_1191 2a6bddf894a8bcb462a513c1ae1480e1 467 SUPERFAMILY SSF46626 326 467 3.55E-23 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_1191 2a6bddf894a8bcb462a513c1ae1480e1 467 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 29 467 2.1E-140 T 10-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase VF_1591 3d2e71ceec4c2cc19d25bdacb1960e8e 245 Pfam PF13353 4Fe-4S single cluster domain 15 149 1.7E-20 T 10-10-2018 VF_1591 3d2e71ceec4c2cc19d25bdacb1960e8e 245 SUPERFAMILY SSF102114 22 219 1.96E-27 T 10-10-2018 VF_1591 3d2e71ceec4c2cc19d25bdacb1960e8e 245 PIRSF PIRSF000371 2 46 4.4E-11 T 10-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 VF_1591 3d2e71ceec4c2cc19d25bdacb1960e8e 245 PIRSF PIRSF000371 43 244 1.5E-44 T 10-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 VF_1591 3d2e71ceec4c2cc19d25bdacb1960e8e 245 ProSitePatterns PS01087 Radical activating enzymes signature. 17 38 - T 10-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 VF_1591 3d2e71ceec4c2cc19d25bdacb1960e8e 245 Gene3D G3DSA:3.20.20.70 2 245 5.1E-102 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1591 3d2e71ceec4c2cc19d25bdacb1960e8e 245 Pfam PF04055 Radical SAM superfamily 23 179 2.5E-31 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_1591 3d2e71ceec4c2cc19d25bdacb1960e8e 245 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 5 238 1.6E-105 T 10-10-2018 IPR012838 Pyruvate formate-lyase 1 activating enzyme GO:0043365|GO:0055114 VF_1960 26d6f72dd71ddb5af26ab5827aa20ae6 243 SUPERFAMILY SSF53633 7 240 1.28E-71 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_1960 26d6f72dd71ddb5af26ab5827aa20ae6 243 Gene3D G3DSA:3.40.1160.10 4 243 1.9E-75 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_1960 26d6f72dd71ddb5af26ab5827aa20ae6 243 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 43.727 T 10-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 VF_1960 26d6f72dd71ddb5af26ab5827aa20ae6 243 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 240 6.0E-102 T 10-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 VF_1960 26d6f72dd71ddb5af26ab5827aa20ae6 243 PIRSF PIRSF005650 4 243 2.0E-89 T 10-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 VF_1960 26d6f72dd71ddb5af26ab5827aa20ae6 243 Pfam PF00696 Amino acid kinase family 11 219 3.3E-26 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VF_1217 b33284a43fde735a29410da099bc6ae2 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 63 3.7E-25 T 10-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VF_1217 b33284a43fde735a29410da099bc6ae2 64 Pfam PF01632 Ribosomal protein L35 2 61 6.7E-20 T 10-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1217 b33284a43fde735a29410da099bc6ae2 64 SUPERFAMILY SSF143034 2 63 2.09E-19 T 10-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1217 b33284a43fde735a29410da099bc6ae2 64 Gene3D G3DSA:2.40.50.530 1 64 3.2E-17 T 10-10-2018 VF_1217 b33284a43fde735a29410da099bc6ae2 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 63 17.447 T 10-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VF_1217 b33284a43fde735a29410da099bc6ae2 64 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 30 - T 10-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_1217 b33284a43fde735a29410da099bc6ae2 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.0E-17 T 10-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VF_1217 b33284a43fde735a29410da099bc6ae2 64 PRINTS PR00064 Ribosomal protein L35 signature 20 34 1.0E-17 T 10-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VF_1217 b33284a43fde735a29410da099bc6ae2 64 PRINTS PR00064 Ribosomal protein L35 signature 35 53 1.0E-17 T 10-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VF_2179 ad2a8c355737ce9312b114339bc480c8 628 SUPERFAMILY SSF51230 1 91 2.22E-23 T 10-10-2018 IPR011053 Single hybrid motif VF_2179 ad2a8c355737ce9312b114339bc480c8 628 Gene3D G3DSA:3.30.559.10 381 628 7.8E-96 T 10-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 VF_2179 ad2a8c355737ce9312b114339bc480c8 628 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 190 628 3.4E-202 T 10-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 VF_2179 ad2a8c355737ce9312b114339bc480c8 628 SUPERFAMILY SSF51230 204 295 7.07E-23 T 10-10-2018 IPR011053 Single hybrid motif VF_2179 ad2a8c355737ce9312b114339bc480c8 628 SUPERFAMILY SSF51230 104 195 1.01E-21 T 10-10-2018 IPR011053 Single hybrid motif VF_2179 ad2a8c355737ce9312b114339bc480c8 628 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 397 627 3.3E-79 T 10-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 VF_2179 ad2a8c355737ce9312b114339bc480c8 628 Gene3D G3DSA:2.40.50.100 204 279 1.5E-19 T 10-10-2018 VF_2179 ad2a8c355737ce9312b114339bc480c8 628 SUPERFAMILY SSF47005 316 360 1.03E-12 T 10-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VF_2179 ad2a8c355737ce9312b114339bc480c8 628 Gene3D G3DSA:2.40.50.100 104 181 1.4E-20 T 10-10-2018 VF_2179 ad2a8c355737ce9312b114339bc480c8 628 Gene3D G3DSA:2.40.50.100 1 80 8.0E-22 T 10-10-2018 VF_2179 ad2a8c355737ce9312b114339bc480c8 628 Gene3D G3DSA:4.10.320.10 321 366 1.8E-20 T 10-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VF_2179 ad2a8c355737ce9312b114339bc480c8 628 SUPERFAMILY SSF52777 386 627 2.18E-80 T 10-10-2018 VF_2179 ad2a8c355737ce9312b114339bc480c8 628 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 127 156 - T 10-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VF_2179 ad2a8c355737ce9312b114339bc480c8 628 Pfam PF02817 e3 binding domain 322 356 2.7E-15 T 10-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 VF_2179 ad2a8c355737ce9312b114339bc480c8 628 Pfam PF00364 Biotin-requiring enzyme 4 73 4.6E-21 T 10-10-2018 IPR000089 Biotin/lipoyl attachment VF_2179 ad2a8c355737ce9312b114339bc480c8 628 Pfam PF00364 Biotin-requiring enzyme 204 274 1.2E-21 T 10-10-2018 IPR000089 Biotin/lipoyl attachment VF_2179 ad2a8c355737ce9312b114339bc480c8 628 Pfam PF00364 Biotin-requiring enzyme 105 175 8.1E-21 T 10-10-2018 IPR000089 Biotin/lipoyl attachment VF_2179 ad2a8c355737ce9312b114339bc480c8 628 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 10-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VF_2179 ad2a8c355737ce9312b114339bc480c8 628 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 226 255 - T 10-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VF_A1111 7ab91b993ba372335d9d0203129a1ce9 279 SMART SM00028 187 220 1.2 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A1111 7ab91b993ba372335d9d0203129a1ce9 279 SMART SM00028 221 254 1.5 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A1111 7ab91b993ba372335d9d0203129a1ce9 279 SUPERFAMILY SSF48452 174 251 3.79E-14 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A1111 7ab91b993ba372335d9d0203129a1ce9 279 Gene3D G3DSA:1.25.40.10 96 266 4.7E-16 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0966 10340a417995b4c0f37d9a72371417e8 456 Gene3D G3DSA:3.30.1330.90 10 157 3.3E-50 T 10-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 VF_A0966 10340a417995b4c0f37d9a72371417e8 456 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 448 4.6E-201 T 10-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 VF_A0966 10340a417995b4c0f37d9a72371417e8 456 SUPERFAMILY SSF143548 16 155 7.85E-44 T 10-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 VF_A0966 10340a417995b4c0f37d9a72371417e8 456 Pfam PF03313 Serine dehydratase alpha chain 182 447 2.2E-95 T 10-10-2018 IPR005130 Serine dehydratase-like, alpha subunit VF_A0966 10340a417995b4c0f37d9a72371417e8 456 Pfam PF03315 Serine dehydratase beta chain 3 153 4.2E-53 T 10-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 VF_A0867 5774c248c587a84920575e36c731815e 348 Pfam PF00482 Type II secretion system (T2SS), protein F 220 338 2.2E-8 T 10-10-2018 IPR018076 Type II secretion system F domain VF_A0867 5774c248c587a84920575e36c731815e 348 Pfam PF00482 Type II secretion system (T2SS), protein F 20 140 3.2E-9 T 10-10-2018 IPR018076 Type II secretion system F domain VF_A0867 5774c248c587a84920575e36c731815e 348 Gene3D G3DSA:1.20.81.30 210 307 1.5E-5 T 10-10-2018 VF_A0867 5774c248c587a84920575e36c731815e 348 Gene3D G3DSA:1.20.81.30 7 124 3.8E-25 T 10-10-2018 VF_1477 8c00f0a38f43dd4cbb0dc3d71eff8ee2 328 Pfam PF00226 DnaJ domain 279 324 1.8E-8 T 10-10-2018 IPR001623 DnaJ domain VF_1477 8c00f0a38f43dd4cbb0dc3d71eff8ee2 328 PRINTS PR00625 DnaJ domain signature 298 313 5.5E-5 T 10-10-2018 IPR001623 DnaJ domain VF_1477 8c00f0a38f43dd4cbb0dc3d71eff8ee2 328 PRINTS PR00625 DnaJ domain signature 280 298 5.5E-5 T 10-10-2018 IPR001623 DnaJ domain VF_1477 8c00f0a38f43dd4cbb0dc3d71eff8ee2 328 Gene3D G3DSA:1.25.40.10 19 172 1.8E-39 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1477 8c00f0a38f43dd4cbb0dc3d71eff8ee2 328 SMART SM00671 31 66 5.5E-4 T 10-10-2018 IPR006597 Sel1-like repeat VF_1477 8c00f0a38f43dd4cbb0dc3d71eff8ee2 328 SMART SM00671 67 102 8.2E-12 T 10-10-2018 IPR006597 Sel1-like repeat VF_1477 8c00f0a38f43dd4cbb0dc3d71eff8ee2 328 SMART SM00671 103 138 5.3E-6 T 10-10-2018 IPR006597 Sel1-like repeat VF_1477 8c00f0a38f43dd4cbb0dc3d71eff8ee2 328 SMART SM00271 277 327 2.6E-7 T 10-10-2018 IPR001623 DnaJ domain VF_1477 8c00f0a38f43dd4cbb0dc3d71eff8ee2 328 SUPERFAMILY SSF81901 25 142 3.27E-27 T 10-10-2018 VF_1477 8c00f0a38f43dd4cbb0dc3d71eff8ee2 328 Gene3D G3DSA:1.10.287.110 269 328 3.0E-11 T 10-10-2018 IPR036869 Chaperone J-domain superfamily VF_1477 8c00f0a38f43dd4cbb0dc3d71eff8ee2 328 SUPERFAMILY SSF46565 227 327 3.4E-13 T 10-10-2018 IPR036869 Chaperone J-domain superfamily VF_1477 8c00f0a38f43dd4cbb0dc3d71eff8ee2 328 Pfam PF08238 Sel1 repeat 104 138 0.21 T 10-10-2018 IPR006597 Sel1-like repeat VF_1477 8c00f0a38f43dd4cbb0dc3d71eff8ee2 328 Pfam PF08238 Sel1 repeat 68 102 1.5E-10 T 10-10-2018 IPR006597 Sel1-like repeat VF_1477 8c00f0a38f43dd4cbb0dc3d71eff8ee2 328 Pfam PF08238 Sel1 repeat 31 65 1.2E-6 T 10-10-2018 IPR006597 Sel1-like repeat VF_1852 125b4c8e3ec1080d81559c3cd7b16517 577 PRINTS PR01009 Flagellar M-ring protein signature 295 313 5.0E-22 T 10-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VF_1852 125b4c8e3ec1080d81559c3cd7b16517 577 PRINTS PR01009 Flagellar M-ring protein signature 375 399 5.0E-22 T 10-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VF_1852 125b4c8e3ec1080d81559c3cd7b16517 577 PRINTS PR01009 Flagellar M-ring protein signature 225 243 5.0E-22 T 10-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VF_1852 125b4c8e3ec1080d81559c3cd7b16517 577 PRINTS PR01009 Flagellar M-ring protein signature 150 168 5.0E-22 T 10-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VF_1852 125b4c8e3ec1080d81559c3cd7b16517 577 PRINTS PR01009 Flagellar M-ring protein signature 182 196 5.0E-22 T 10-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VF_1852 125b4c8e3ec1080d81559c3cd7b16517 577 Pfam PF01514 Secretory protein of YscJ/FliF family 63 249 1.6E-53 T 10-10-2018 IPR006182 Secretory protein YscJ/FliF VF_1852 125b4c8e3ec1080d81559c3cd7b16517 577 Pfam PF08345 Flagellar M-ring protein C-terminal 282 452 1.2E-38 T 10-10-2018 IPR013556 Flagellar M-ring C-terminal VF_1852 125b4c8e3ec1080d81559c3cd7b16517 577 Gene3D G3DSA:3.30.300.30 152 247 8.9E-8 T 10-10-2018 VF_1852 125b4c8e3ec1080d81559c3cd7b16517 577 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 49 576 1.6E-74 T 10-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VF_1852 125b4c8e3ec1080d81559c3cd7b16517 577 PIRSF PIRSF004862 28 577 5.3E-144 T 10-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VF_0149 f6b3b695abcba5719893915a840d6c86 389 SUPERFAMILY SSF53756 6 383 1.88E-49 T 10-10-2018 VF_0149 f6b3b695abcba5719893915a840d6c86 389 Gene3D G3DSA:3.40.50.2000 1 204 1.9E-10 T 10-10-2018 VF_0149 f6b3b695abcba5719893915a840d6c86 389 Gene3D G3DSA:3.40.50.2000 205 368 5.9E-30 T 10-10-2018 VF_0149 f6b3b695abcba5719893915a840d6c86 389 Pfam PF00534 Glycosyl transferases group 1 210 363 3.1E-26 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 VF_0287 3cbe716758ab7e6ad75a8221490a24fc 334 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 11 330 6.9E-130 T 10-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 VF_0287 3cbe716758ab7e6ad75a8221490a24fc 334 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 9 334 36.891 T 10-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 VF_0287 3cbe716758ab7e6ad75a8221490a24fc 334 SUPERFAMILY SSF53659 10 333 4.32E-115 T 10-10-2018 VF_0287 3cbe716758ab7e6ad75a8221490a24fc 334 Gene3D G3DSA:3.40.718.10 3 334 6.0E-128 T 10-10-2018 VF_0287 3cbe716758ab7e6ad75a8221490a24fc 334 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 38 327 2.3E-109 T 10-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 VF_1817 0b8bb4df41cfb10c7c8214ae5c67e943 171 Pfam PF03918 Cytochrome C biogenesis protein 19 159 1.2E-53 T 10-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family VF_1817 0b8bb4df41cfb10c7c8214ae5c67e943 171 Gene3D G3DSA:1.10.8.640 28 112 7.5E-37 T 10-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily VF_2548 8947276165eb07b3be47e37f8139bf3e 215 Pfam PF03006 Haemolysin-III related 8 204 8.2E-38 T 10-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 VF_2548 8947276165eb07b3be47e37f8139bf3e 215 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 11 212 1.6E-64 T 10-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 VF_1488 4dfc9ef999337530625fe3f1b0e77adb 399 PRINTS PR00799 Aspartate aminotransferase signature 209 221 7.0E-39 T 10-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VF_1488 4dfc9ef999337530625fe3f1b0e77adb 399 PRINTS PR00799 Aspartate aminotransferase signature 178 197 7.0E-39 T 10-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VF_1488 4dfc9ef999337530625fe3f1b0e77adb 399 PRINTS PR00799 Aspartate aminotransferase signature 276 301 7.0E-39 T 10-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VF_1488 4dfc9ef999337530625fe3f1b0e77adb 399 PRINTS PR00799 Aspartate aminotransferase signature 344 362 7.0E-39 T 10-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VF_1488 4dfc9ef999337530625fe3f1b0e77adb 399 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 246 259 - T 10-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 VF_1488 4dfc9ef999337530625fe3f1b0e77adb 399 Gene3D G3DSA:3.40.640.10 63 303 1.1E-158 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_1488 4dfc9ef999337530625fe3f1b0e77adb 399 Gene3D G3DSA:3.90.1150.10 8 395 1.1E-158 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_1488 4dfc9ef999337530625fe3f1b0e77adb 399 Pfam PF00155 Aminotransferase class I and II 30 394 2.9E-83 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VF_1488 4dfc9ef999337530625fe3f1b0e77adb 399 SUPERFAMILY SSF53383 1 392 4.08E-113 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_A1088 af31cca2f9b9c062e26fa4796682028d 271 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 5 209 5.3E-14 T 10-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 VF_A1088 af31cca2f9b9c062e26fa4796682028d 271 SUPERFAMILY SSF53649 2 256 2.13E-46 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_A1088 af31cca2f9b9c062e26fa4796682028d 271 Gene3D G3DSA:3.40.720.10 3 268 1.7E-30 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VF_0560 01652c35730aff2e1ff723827c213ce2 170 TIGRFAM TIGR00258 TIGR00258: inosine/xanthosine triphosphatase 5 167 2.5E-48 T 10-10-2018 IPR002786 Non-canonical purine NTP phosphatase VF_0560 01652c35730aff2e1ff723827c213ce2 170 Pfam PF01931 Protein of unknown function DUF84 6 165 2.6E-59 T 10-10-2018 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 VF_0560 01652c35730aff2e1ff723827c213ce2 170 Gene3D G3DSA:3.90.950.10 1 170 4.2E-69 T 10-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VF_0560 01652c35730aff2e1ff723827c213ce2 170 SUPERFAMILY SSF52972 1 169 6.54E-62 T 10-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VF_0560 01652c35730aff2e1ff723827c213ce2 170 Hamap MF_00648 Non-canonical purine NTP phosphatase. 1 170 32.356 T 10-10-2018 IPR002786 Non-canonical purine NTP phosphatase VF_0462 1d0bb162034d75fb71777bfd25d8df09 296 SUPERFAMILY SSF53850 90 287 1.32E-27 T 10-10-2018 VF_0462 1d0bb162034d75fb71777bfd25d8df09 296 Pfam PF03466 LysR substrate binding domain 96 284 5.8E-17 T 10-10-2018 IPR005119 LysR, substrate-binding VF_0462 1d0bb162034d75fb71777bfd25d8df09 296 SUPERFAMILY SSF46785 2 85 5.15E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0462 1d0bb162034d75fb71777bfd25d8df09 296 Gene3D G3DSA:3.40.190.290 95 291 2.9E-12 T 10-10-2018 VF_0462 1d0bb162034d75fb71777bfd25d8df09 296 Gene3D G3DSA:1.10.10.10 4 93 4.9E-19 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0462 1d0bb162034d75fb71777bfd25d8df09 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 3.3E-16 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1117 a15c59713f92e8ac9a2c691778eadb53 324 Pfam PF14057 GGGtGRT protein 4 320 1.2E-173 T 10-10-2018 IPR025964 GGGtGRT protein VF_1520 bdf1d4b51fa5ac11e154afd1f706f16b 383 Gene3D G3DSA:1.10.10.680 169 250 4.4E-72 T 10-10-2018 VF_1520 bdf1d4b51fa5ac11e154afd1f706f16b 383 Pfam PF09002 Domain of unknown function (DUF1887) 1 379 3.6E-178 T 10-10-2018 IPR015093 Protein of unknown function DUF1887 VF_1520 bdf1d4b51fa5ac11e154afd1f706f16b 383 Gene3D G3DSA:3.40.1350.10 251 376 4.4E-72 T 10-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 VF_1520 bdf1d4b51fa5ac11e154afd1f706f16b 383 Gene3D G3DSA:3.40.50.10770 1 140 9.3E-54 T 10-10-2018 VF_1520 bdf1d4b51fa5ac11e154afd1f706f16b 383 SUPERFAMILY SSF52980 1 382 1.97E-119 T 10-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VF_0628 f762b69fb398aba77c37b5c93ee5c7eb 304 Pfam PF13413 Helix-turn-helix domain 20 79 1.2E-16 T 10-10-2018 VF_0628 f762b69fb398aba77c37b5c93ee5c7eb 304 Pfam PF13464 Domain of unknown function (DUF4115) 229 302 7.7E-25 T 10-10-2018 IPR025194 Domain of unknown function DUF4115 VF_0628 f762b69fb398aba77c37b5c93ee5c7eb 304 Gene3D G3DSA:1.10.260.40 4 115 2.0E-22 T 10-10-2018 VF_0886 215697561971e399305dcc08f2978ed0 373 SUPERFAMILY SSF159245 55 373 2.22E-87 T 10-10-2018 VF_0886 215697561971e399305dcc08f2978ed0 373 Gene3D G3DSA:2.40.370.10 251 373 6.0E-20 T 10-10-2018 IPR023374 AttH-like domain superfamily VF_0886 215697561971e399305dcc08f2978ed0 373 Pfam PF07143 CrtC N-terminal lipocalin domain 78 247 3.2E-38 T 10-10-2018 IPR010791 AttH domain VF_0886 215697561971e399305dcc08f2978ed0 373 Gene3D G3DSA:2.40.370.10 66 249 1.1E-47 T 10-10-2018 IPR023374 AttH-like domain superfamily VF_0886 215697561971e399305dcc08f2978ed0 373 Pfam PF17186 Lipocalin-like domain 251 373 1.3E-29 T 10-10-2018 VF_0789 83ac3b91f43b7d52372b540230da2865 183 SUPERFAMILY SSF56300 2 169 3.19E-37 T 10-10-2018 VF_0789 83ac3b91f43b7d52372b540230da2865 183 Gene3D G3DSA:3.60.21.10 1 182 1.6E-58 T 10-10-2018 IPR029052 Metallo-dependent phosphatase-like VF_0789 83ac3b91f43b7d52372b540230da2865 183 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 2 163 4.5E-21 T 10-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 VF_0789 83ac3b91f43b7d52372b540230da2865 183 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 2 168 8.6E-27 T 10-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 VF_1222 d6dff9081c596a12fea7cc207485de8e 282 Pfam PF01497 Periplasmic binding protein 28 258 2.3E-52 T 10-10-2018 IPR002491 ABC transporter periplasmic binding domain VF_1222 d6dff9081c596a12fea7cc207485de8e 282 Gene3D G3DSA:3.40.50.1980 22 141 4.3E-35 T 10-10-2018 VF_1222 d6dff9081c596a12fea7cc207485de8e 282 Gene3D G3DSA:3.40.50.1980 142 282 4.9E-38 T 10-10-2018 VF_1222 d6dff9081c596a12fea7cc207485de8e 282 SUPERFAMILY SSF53807 26 282 3.73E-48 T 10-10-2018 VF_1874 7ccff38039610bffb8ce333e89716a39 432 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 8 28 - T 10-10-2018 IPR019776 Flagellar basal body rod protein, conserved site VF_1874 7ccff38039610bffb8ce333e89716a39 432 SUPERFAMILY SSF117143 78 393 1.26E-68 T 10-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VF_1874 7ccff38039610bffb8ce333e89716a39 432 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 353 431 2.0E-15 T 10-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VF_1874 7ccff38039610bffb8ce333e89716a39 432 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 2 414 1.4E-92 T 10-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VF_1874 7ccff38039610bffb8ce333e89716a39 432 Gene3D G3DSA:2.60.98.20 154 317 3.4E-24 T 10-10-2018 IPR037058 Flagellar hook protein FlgE superfamily VF_1874 7ccff38039610bffb8ce333e89716a39 432 Pfam PF07559 Flagellar basal body protein FlaE 181 312 4.1E-22 T 10-10-2018 IPR011491 Flagellar hook protein FlgE VF_1874 7ccff38039610bffb8ce333e89716a39 432 Pfam PF00460 Flagella basal body rod protein 3 32 5.1E-11 T 10-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VF_1159 6b6a726a9bbf77607cb9ff7e420d0cb8 466 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 5 466 3.8E-206 T 10-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 VF_1159 6b6a726a9bbf77607cb9ff7e420d0cb8 466 SUPERFAMILY SSF50249 15 101 1.59E-17 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1159 6b6a726a9bbf77607cb9ff7e420d0cb8 466 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 466 45.425 T 10-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 VF_1159 6b6a726a9bbf77607cb9ff7e420d0cb8 466 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 460 3.4E-80 T 10-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_1159 6b6a726a9bbf77607cb9ff7e420d0cb8 466 Gene3D G3DSA:3.30.930.10 109 465 1.2E-108 T 10-10-2018 VF_1159 6b6a726a9bbf77607cb9ff7e420d0cb8 466 Pfam PF01336 OB-fold nucleic acid binding domain 20 99 3.4E-11 T 10-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 VF_1159 6b6a726a9bbf77607cb9ff7e420d0cb8 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 421 435 1.6E-14 T 10-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_1159 6b6a726a9bbf77607cb9ff7e420d0cb8 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 381 397 1.6E-14 T 10-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_1159 6b6a726a9bbf77607cb9ff7e420d0cb8 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 224 237 1.6E-14 T 10-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_1159 6b6a726a9bbf77607cb9ff7e420d0cb8 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 220 1.6E-14 T 10-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_1159 6b6a726a9bbf77607cb9ff7e420d0cb8 466 Gene3D G3DSA:2.40.50.140 2 106 3.8E-20 T 10-10-2018 VF_1159 6b6a726a9bbf77607cb9ff7e420d0cb8 466 SUPERFAMILY SSF55681 96 464 2.59E-93 T 10-10-2018 VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 SMART SM00846 3 152 5.5E-67 T 10-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 313 5.4E-60 T 10-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 SUPERFAMILY SSF51735 1 179 6.88E-51 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 Gene3D G3DSA:3.30.360.10 151 315 5.4E-124 T 10-10-2018 VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 Gene3D G3DSA:3.40.50.720 4 327 5.4E-124 T 10-10-2018 VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 323 1.2E-116 T 10-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 101 1.2E-31 T 10-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 9.8E-30 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 9.8E-30 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 108 121 9.8E-30 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 9.8E-30 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 9.8E-30 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 150 157 - T 10-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 SUPERFAMILY SSF55347 152 314 5.06E-64 T 10-10-2018 VF_2360 e3ae3aa14b33c2cf9abdd385aa012b03 333 PIRSF PIRSF000149 1 331 9.3E-115 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0579 5559dc5c2adbbc7807618e6f757f0754 292 SUPERFAMILY SSF53850 88 291 5.97E-41 T 10-10-2018 VF_0579 5559dc5c2adbbc7807618e6f757f0754 292 Gene3D G3DSA:1.10.10.10 1 85 6.3E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0579 5559dc5c2adbbc7807618e6f757f0754 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.3E-14 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0579 5559dc5c2adbbc7807618e6f757f0754 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.3E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0579 5559dc5c2adbbc7807618e6f757f0754 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.3E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0579 5559dc5c2adbbc7807618e6f757f0754 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.3E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_0579 5559dc5c2adbbc7807618e6f757f0754 292 Pfam PF03466 LysR substrate binding domain 89 291 6.2E-46 T 10-10-2018 IPR005119 LysR, substrate-binding VF_0579 5559dc5c2adbbc7807618e6f757f0754 292 Gene3D G3DSA:3.40.190.290 92 292 8.3E-40 T 10-10-2018 VF_0579 5559dc5c2adbbc7807618e6f757f0754 292 SUPERFAMILY SSF46785 2 81 2.02E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0298 cb98d75992a92638c4648d0dd7f25fe8 392 TIGRFAM TIGR02162 torC: trimethylamine-N-oxide reductase c-type cytochrome TorC 7 392 2.0E-170 T 10-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 VF_A0298 cb98d75992a92638c4648d0dd7f25fe8 392 PIRSF PIRSF000014 2 392 2.2E-151 T 10-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 VF_A0298 cb98d75992a92638c4648d0dd7f25fe8 392 SUPERFAMILY SSF48695 13 185 1.4E-57 T 10-10-2018 IPR036280 Multiheme cytochrome superfamily VF_A0298 cb98d75992a92638c4648d0dd7f25fe8 392 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 15 185 1.6E-70 T 10-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal VF_A0298 cb98d75992a92638c4648d0dd7f25fe8 392 Gene3D G3DSA:1.10.3820.10 16 191 1.1E-35 T 10-10-2018 IPR038266 NapC/NirT cytochrome c superfamily VF_A0899 94fe5f80da4955bcc50208c168aa9ed4 506 Pfam PF00884 Sulfatase 33 358 4.9E-62 T 10-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VF_A0899 94fe5f80da4955bcc50208c168aa9ed4 506 Pfam PF14707 C-terminal region of aryl-sulfatase 398 501 7.2E-8 T 10-10-2018 VF_A0899 94fe5f80da4955bcc50208c168aa9ed4 506 Gene3D G3DSA:3.40.720.10 33 399 1.2E-97 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VF_A0899 94fe5f80da4955bcc50208c168aa9ed4 506 Gene3D G3DSA:3.30.1120.10 400 458 1.2E-97 T 10-10-2018 VF_A0899 94fe5f80da4955bcc50208c168aa9ed4 506 SUPERFAMILY SSF53649 29 502 1.14E-122 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_2515 3fe4086958bbb2c0b58ae9e844649c75 526 ProSitePatterns PS01303 BCCT family of transporters signature. 336 345 - T 10-10-2018 IPR018093 BCCT transporter, conserved site VF_2515 3fe4086958bbb2c0b58ae9e844649c75 526 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 75 520 4.6E-134 T 10-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VF_2515 3fe4086958bbb2c0b58ae9e844649c75 526 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 33 520 2.5E-175 T 10-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VF_A0367 c51e6c95cc05ab6b15bc211e38212c0a 298 SUPERFAMILY SSF52768 3 281 1.53E-82 T 10-10-2018 IPR023696 Ureohydrolase domain superfamily VF_A0367 c51e6c95cc05ab6b15bc211e38212c0a 298 Gene3D G3DSA:3.40.800.20 1 291 2.7E-65 T 10-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 VF_A0367 c51e6c95cc05ab6b15bc211e38212c0a 298 PRINTS PR01270 Histone deacetylase superfamily signature 151 166 2.0E-16 T 10-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 VF_A0367 c51e6c95cc05ab6b15bc211e38212c0a 298 PRINTS PR01270 Histone deacetylase superfamily signature 225 235 2.0E-16 T 10-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 VF_A0367 c51e6c95cc05ab6b15bc211e38212c0a 298 PRINTS PR01270 Histone deacetylase superfamily signature 117 140 2.0E-16 T 10-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 VF_A0367 c51e6c95cc05ab6b15bc211e38212c0a 298 Pfam PF00850 Histone deacetylase domain 24 281 2.0E-50 T 10-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 VF_0266 77a4cc4294bb9f58c39f68c9b80658c7 205 Gene3D G3DSA:3.40.50.1950 1 203 2.2E-77 T 10-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 VF_0266 77a4cc4294bb9f58c39f68c9b80658c7 205 Pfam PF02441 Flavoprotein 6 181 3.1E-24 T 10-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 VF_0266 77a4cc4294bb9f58c39f68c9b80658c7 205 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 7 200 6.5E-58 T 10-10-2018 IPR004507 Flavin prenyltransferase UbiX-like VF_0266 77a4cc4294bb9f58c39f68c9b80658c7 205 SUPERFAMILY SSF52507 5 201 2.35E-55 T 10-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 VF_0266 77a4cc4294bb9f58c39f68c9b80658c7 205 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 5 202 35.223 T 10-10-2018 IPR004507 Flavin prenyltransferase UbiX-like VF_2492 bad27b7ce07d8a48c3de26d7ffe7f2d9 242 SUPERFAMILY SSF52833 67 233 4.15E-32 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_2492 bad27b7ce07d8a48c3de26d7ffe7f2d9 242 Gene3D G3DSA:3.40.30.10 67 241 5.5E-32 T 10-10-2018 VF_2492 bad27b7ce07d8a48c3de26d7ffe7f2d9 242 Pfam PF13462 Thioredoxin 76 233 1.9E-16 T 10-10-2018 IPR012336 Thioredoxin-like fold VF_2060 03db92041de2b59327ea2d082e078241 541 Gene3D G3DSA:1.10.10.10 5 114 2.2E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2060 03db92041de2b59327ea2d082e078241 541 Gene3D G3DSA:1.25.40.10 368 533 2.3E-10 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_2060 03db92041de2b59327ea2d082e078241 541 SUPERFAMILY SSF46894 6 102 8.79E-18 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_2060 03db92041de2b59327ea2d082e078241 541 Pfam PF00486 Transcriptional regulatory protein, C terminal 25 100 3.1E-16 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_2060 03db92041de2b59327ea2d082e078241 541 SMART SM00862 24 100 1.3E-14 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_1622 cb0aef65ceeaf5691f5073c50d910d3b 687 SUPERFAMILY SSF52540 195 680 4.19E-82 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1622 cb0aef65ceeaf5691f5073c50d910d3b 687 Pfam PF00580 UvrD/REP helicase N-terminal domain 197 498 4.6E-44 T 10-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 VF_1622 cb0aef65ceeaf5691f5073c50d910d3b 687 Gene3D G3DSA:3.40.50.300 197 498 2.6E-48 T 10-10-2018 VF_1622 cb0aef65ceeaf5691f5073c50d910d3b 687 Gene3D G3DSA:3.40.50.300 506 682 2.8E-28 T 10-10-2018 VF_1622 cb0aef65ceeaf5691f5073c50d910d3b 687 Pfam PF12462 DNA helicase IV / RNA helicase N terminal 1 163 1.2E-44 T 10-10-2018 IPR022161 DNA helicase IV, N-terminal domain VF_1622 cb0aef65ceeaf5691f5073c50d910d3b 687 Gene3D G3DSA:1.10.10.160 298 414 2.6E-48 T 10-10-2018 IPR013986 DExx box DNA helicase domain superfamily VF_1622 cb0aef65ceeaf5691f5073c50d910d3b 687 Pfam PF13361 UvrD-like helicase C-terminal domain 600 667 9.8E-17 T 10-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 VF_0502 93169ba5ad2e2793d97d871396e4dc74 418 Pfam PF07670 Nucleoside recognition 99 195 3.2E-6 T 10-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VF_0502 93169ba5ad2e2793d97d871396e4dc74 418 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 4 415 1.4E-151 T 10-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 VF_0502 93169ba5ad2e2793d97d871396e4dc74 418 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 201 415 2.6E-74 T 10-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 VF_0502 93169ba5ad2e2793d97d871396e4dc74 418 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 7.3E-25 T 10-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 VF_2272 7736d00819ea249c889002e6ff797e72 415 ProSitePatterns PS00331 Malic enzymes signature. 159 175 - T 10-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 VF_2272 7736d00819ea249c889002e6ff797e72 415 Pfam PF00390 Malic enzyme, N-terminal domain 19 150 1.7E-27 T 10-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 VF_2272 7736d00819ea249c889002e6ff797e72 415 SMART SM00919 163 399 6.6E-139 T 10-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 VF_2272 7736d00819ea249c889002e6ff797e72 415 Gene3D G3DSA:3.40.50.10380 1 160 4.4E-66 T 10-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 VF_2272 7736d00819ea249c889002e6ff797e72 415 SUPERFAMILY SSF51735 163 409 4.3E-80 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_2272 7736d00819ea249c889002e6ff797e72 415 Gene3D G3DSA:3.40.50.720 161 415 1.0E-82 T 10-10-2018 VF_2272 7736d00819ea249c889002e6ff797e72 415 SMART SM01274 18 151 1.8E-76 T 10-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 VF_2272 7736d00819ea249c889002e6ff797e72 415 SUPERFAMILY SSF53223 10 161 1.37E-52 T 10-10-2018 VF_2272 7736d00819ea249c889002e6ff797e72 415 Pfam PF03949 Malic enzyme, NAD binding domain 165 357 1.0E-25 T 10-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 VF_2272 7736d00819ea249c889002e6ff797e72 415 PIRSF PIRSF000106 44 415 2.1E-69 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VF_A0179 b98ad51f913075add13afa9c63ff3059 226 Pfam PF00072 Response regulator receiver domain 4 112 1.3E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0179 b98ad51f913075add13afa9c63ff3059 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 223 9.9E-26 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0179 b98ad51f913075add13afa9c63ff3059 226 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 222 6.1E-98 T 10-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 VF_A0179 b98ad51f913075add13afa9c63ff3059 226 SMART SM00862 148 223 2.4E-23 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0179 b98ad51f913075add13afa9c63ff3059 226 SUPERFAMILY SSF52172 1 176 1.09E-37 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0179 b98ad51f913075add13afa9c63ff3059 226 Gene3D G3DSA:3.40.50.2300 1 121 6.1E-38 T 10-10-2018 VF_A0179 b98ad51f913075add13afa9c63ff3059 226 SMART SM00448 1 112 5.7E-40 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0179 b98ad51f913075add13afa9c63ff3059 226 Gene3D G3DSA:1.10.10.10 126 226 6.1E-30 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2129 b2dc24daa4daed0e2f0eee26f65e39b8 317 Pfam PF03186 CobD/Cbib protein 19 285 8.3E-26 T 10-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 VF_1379 e53cf4000f242da311cbe3212f3abbe3 962 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 388 653 4.7E-11 T 10-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 VF_1379 e53cf4000f242da311cbe3212f3abbe3 962 SUPERFAMILY SSF53649 390 658 4.58E-9 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_1092 1e9e32365b1b8e71f724742f5d06535f 668 Pfam PF08376 Nitrate and nitrite sensing 58 299 1.1E-43 T 10-10-2018 IPR013587 Nitrate/nitrite sensing protein VF_1092 1e9e32365b1b8e71f724742f5d06535f 668 Gene3D G3DSA:1.10.287.950 339 668 1.8E-62 T 10-10-2018 VF_1092 1e9e32365b1b8e71f724742f5d06535f 668 SMART SM00283 405 666 7.2E-64 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1092 1e9e32365b1b8e71f724742f5d06535f 668 SUPERFAMILY SSF58104 358 667 6.19E-69 T 10-10-2018 VF_1092 1e9e32365b1b8e71f724742f5d06535f 668 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 464 630 1.3E-38 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1903 8e92101caa021b64840dff7067fdd788 191 PIRSF PIRSF000013 1 191 4.1E-91 T 10-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 VF_1903 8e92101caa021b64840dff7067fdd788 191 Gene3D G3DSA:1.10.3820.10 11 188 8.8E-34 T 10-10-2018 IPR038266 NapC/NirT cytochrome c superfamily VF_1903 8e92101caa021b64840dff7067fdd788 191 SUPERFAMILY SSF48695 16 191 4.41E-54 T 10-10-2018 IPR036280 Multiheme cytochrome superfamily VF_1903 8e92101caa021b64840dff7067fdd788 191 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 15 185 2.6E-69 T 10-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal VF_A0309 3a9d1620e1c012aafa79ca4e13b0bbdd 541 Gene3D G3DSA:3.90.76.10 45 216 1.1E-137 T 10-10-2018 VF_A0309 3a9d1620e1c012aafa79ca4e13b0bbdd 541 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 77 455 1.4E-82 T 10-10-2018 IPR000914 Solute-binding protein family 5 domain VF_A0309 3a9d1620e1c012aafa79ca4e13b0bbdd 541 Gene3D G3DSA:3.40.190.10 217 525 1.1E-137 T 10-10-2018 VF_A0309 3a9d1620e1c012aafa79ca4e13b0bbdd 541 SUPERFAMILY SSF53850 35 534 8.69E-123 T 10-10-2018 VF_A0309 3a9d1620e1c012aafa79ca4e13b0bbdd 541 PIRSF PIRSF002741 2 540 4.8E-92 T 10-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VF_A0309 3a9d1620e1c012aafa79ca4e13b0bbdd 541 Gene3D G3DSA:3.10.105.10 296 513 1.1E-137 T 10-10-2018 VF_2208 9cf952d9a323d22556bf4614bb4fd781 108 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 23 106 6.8E-21 T 10-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 VF_2208 9cf952d9a323d22556bf4614bb4fd781 108 Pfam PF04999 Cell division protein FtsL 11 106 2.0E-33 T 10-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 VF_2208 9cf952d9a323d22556bf4614bb4fd781 108 Hamap MF_00910 Cell division protein FtsL [ftsL]. 22 105 15.391 T 10-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 VF_1826 2928ae42d341630e54fa7af4c2e0dbad 164 Gene3D G3DSA:2.40.50.180 39 148 4.1E-42 T 10-10-2018 VF_1826 2928ae42d341630e54fa7af4c2e0dbad 164 Gene3D G3DSA:2.30.30.40 22 147 4.1E-42 T 10-10-2018 VF_1826 2928ae42d341630e54fa7af4c2e0dbad 164 SUPERFAMILY SSF50341 14 158 4.05E-41 T 10-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VF_1826 2928ae42d341630e54fa7af4c2e0dbad 164 Pfam PF01584 CheW-like domain 20 156 3.3E-39 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VF_1826 2928ae42d341630e54fa7af4c2e0dbad 164 SMART SM00260 16 153 4.9E-48 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VF_A0259 30a4ad192300e2ff1434bc0457ada2ab 366 Gene3D G3DSA:1.10.10.10 3 114 6.3E-22 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0259 30a4ad192300e2ff1434bc0457ada2ab 366 SMART SM00862 25 98 5.4E-12 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0259 30a4ad192300e2ff1434bc0457ada2ab 366 Pfam PF00486 Transcriptional regulatory protein, C terminal 28 97 3.7E-15 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0259 30a4ad192300e2ff1434bc0457ada2ab 366 SUPERFAMILY SSF46894 2 97 3.12E-19 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_1699 21f2da3ec665e066541679941a43d5a0 376 Gene3D G3DSA:3.40.50.720 93 258 3.6E-112 T 10-10-2018 VF_1699 21f2da3ec665e066541679941a43d5a0 376 SUPERFAMILY SSF52283 17 109 8.5E-23 T 10-10-2018 VF_1699 21f2da3ec665e066541679941a43d5a0 376 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 198 214 - T 10-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VF_1699 21f2da3ec665e066541679941a43d5a0 376 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 257 3.4E-32 T 10-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VF_1699 21f2da3ec665e066541679941a43d5a0 376 SUPERFAMILY SSF51735 93 258 8.94E-32 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1699 21f2da3ec665e066541679941a43d5a0 376 Pfam PF11890 Domain of unknown function (DUF3410) 290 370 1.0E-28 T 10-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 VF_1699 21f2da3ec665e066541679941a43d5a0 376 Gene3D G3DSA:3.30.1370.170 294 376 1.9E-30 T 10-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 VF_1699 21f2da3ec665e066541679941a43d5a0 376 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 358 45.238 T 10-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 VF_1699 21f2da3ec665e066541679941a43d5a0 376 Gene3D G3DSA:3.40.50.720 1 279 3.6E-112 T 10-10-2018 VF_1699 21f2da3ec665e066541679941a43d5a0 376 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 282 8.9E-23 T 10-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 VF_2364 e2ece993f7beb1791b1c96aa5a824d57 408 SUPERFAMILY SSF51905 2 197 2.29E-28 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2364 e2ece993f7beb1791b1c96aa5a824d57 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 270 292 1.1E-11 T 10-10-2018 VF_2364 e2ece993f7beb1791b1c96aa5a824d57 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.1E-11 T 10-10-2018 VF_2364 e2ece993f7beb1791b1c96aa5a824d57 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 1.1E-11 T 10-10-2018 VF_2364 e2ece993f7beb1791b1c96aa5a824d57 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 1.1E-11 T 10-10-2018 VF_2364 e2ece993f7beb1791b1c96aa5a824d57 408 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 7.5E-9 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VF_2364 e2ece993f7beb1791b1c96aa5a824d57 408 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 148 172 7.5E-9 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VF_2364 e2ece993f7beb1791b1c96aa5a824d57 408 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 103 111 7.5E-9 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VF_2364 e2ece993f7beb1791b1c96aa5a824d57 408 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 280 298 7.5E-9 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VF_2364 e2ece993f7beb1791b1c96aa5a824d57 408 Gene3D G3DSA:3.50.50.100 1 390 7.1E-96 T 10-10-2018 VF_2364 e2ece993f7beb1791b1c96aa5a824d57 408 SUPERFAMILY SSF51905 147 327 8.87E-21 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2364 e2ece993f7beb1791b1c96aa5a824d57 408 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 313 1.8E-50 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VF_1095 cb918566f5b761cf409792756d2ba8af 311 Gene3D G3DSA:3.40.190.10 164 266 9.6E-55 T 10-10-2018 VF_1095 cb918566f5b761cf409792756d2ba8af 311 SUPERFAMILY SSF53850 89 300 1.74E-43 T 10-10-2018 VF_1095 cb918566f5b761cf409792756d2ba8af 311 Pfam PF03466 LysR substrate binding domain 89 294 1.2E-42 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1095 cb918566f5b761cf409792756d2ba8af 311 Gene3D G3DSA:1.10.10.10 4 90 5.9E-24 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1095 cb918566f5b761cf409792756d2ba8af 311 SUPERFAMILY SSF46785 5 113 4.51E-23 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1095 cb918566f5b761cf409792756d2ba8af 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.5E-19 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1095 cb918566f5b761cf409792756d2ba8af 311 Gene3D G3DSA:3.40.190.10 93 292 9.6E-55 T 10-10-2018 VF_1820 022708a7ac5a0665655360e87d8db6b6 161 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 146 32.857 T 10-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 VF_1820 022708a7ac5a0665655360e87d8db6b6 161 SUPERFAMILY SSF82093 30 142 2.75E-39 T 10-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 VF_1820 022708a7ac5a0665655360e87d8db6b6 161 Gene3D G3DSA:2.40.50.140 30 142 2.6E-40 T 10-10-2018 VF_1820 022708a7ac5a0665655360e87d8db6b6 161 Pfam PF03100 CcmE 4 136 1.9E-45 T 10-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 VF_1987 3492cce8c36d91b00cb7146b5f036789 431 Pfam PF11808 Domain of unknown function (DUF3329) 6 91 3.5E-30 T 10-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 VF_1987 3492cce8c36d91b00cb7146b5f036789 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 426 2.6E-14 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1987 3492cce8c36d91b00cb7146b5f036789 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 368 2.6E-14 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1987 3492cce8c36d91b00cb7146b5f036789 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 382 2.6E-14 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1987 3492cce8c36d91b00cb7146b5f036789 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 407 2.6E-14 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_1987 3492cce8c36d91b00cb7146b5f036789 431 SMART SM00091 98 165 2.5E-6 T 10-10-2018 IPR000014 PAS domain VF_1987 3492cce8c36d91b00cb7146b5f036789 431 SUPERFAMILY SSF55874 261 427 1.06E-39 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1987 3492cce8c36d91b00cb7146b5f036789 431 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 317 427 8.6E-24 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1987 3492cce8c36d91b00cb7146b5f036789 431 Gene3D G3DSA:1.10.287.130 202 272 2.3E-19 T 10-10-2018 VF_1987 3492cce8c36d91b00cb7146b5f036789 431 SUPERFAMILY SSF47384 192 271 2.75E-17 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_1987 3492cce8c36d91b00cb7146b5f036789 431 Pfam PF00989 PAS fold 99 195 1.1E-8 T 10-10-2018 IPR013767 PAS fold GO:0006355 VF_1987 3492cce8c36d91b00cb7146b5f036789 431 Gene3D G3DSA:3.30.565.10 283 429 8.0E-38 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1987 3492cce8c36d91b00cb7146b5f036789 431 Gene3D G3DSA:3.30.450.20 86 201 1.9E-8 T 10-10-2018 VF_1987 3492cce8c36d91b00cb7146b5f036789 431 SUPERFAMILY SSF55785 86 197 7.85E-11 T 10-10-2018 IPR035965 PAS domain superfamily VF_1987 3492cce8c36d91b00cb7146b5f036789 431 SMART SM00387 317 429 3.5E-34 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_1987 3492cce8c36d91b00cb7146b5f036789 431 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 95 425 3.4E-141 T 10-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 VF_1987 3492cce8c36d91b00cb7146b5f036789 431 Pfam PF00512 His Kinase A (phospho-acceptor) domain 205 271 4.1E-15 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_1987 3492cce8c36d91b00cb7146b5f036789 431 SMART SM00388 205 272 9.0E-19 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_A0205 e7bbd53aac0f83def5c6f5febcb01a82 325 Pfam PF03601 Conserved hypothetical protein 698 38 305 2.0E-52 T 10-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 VF_2574 1cdc4fff034a953e9b02d43a72286d2c 210 PIRSF PIRSF003078 2 210 4.7E-59 T 10-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 VF_2574 1cdc4fff034a953e9b02d43a72286d2c 210 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 16 205 27.998 T 10-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 VF_2574 1cdc4fff034a953e9b02d43a72286d2c 210 Gene3D G3DSA:3.40.50.150 5 209 4.5E-66 T 10-10-2018 VF_2574 1cdc4fff034a953e9b02d43a72286d2c 210 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 29 206 5.1E-58 T 10-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 VF_2574 1cdc4fff034a953e9b02d43a72286d2c 210 SUPERFAMILY SSF53335 7 209 1.03E-40 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_2574 1cdc4fff034a953e9b02d43a72286d2c 210 Pfam PF02527 rRNA small subunit methyltransferase G 23 204 3.5E-63 T 10-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 VF_A1030 4f485f9fa166eea6b1a11d8b690c0327 480 Pfam PF01943 Polysaccharide biosynthesis protein 10 277 3.5E-14 T 10-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 VF_1252 ac0b047aee6d1e0e88ed3b37b86e5c00 315 Gene3D G3DSA:3.30.1370.60 61 298 1.3E-78 T 10-10-2018 VF_1252 ac0b047aee6d1e0e88ed3b37b86e5c00 315 Gene3D G3DSA:1.10.1530.10 14 301 1.3E-78 T 10-10-2018 VF_1252 ac0b047aee6d1e0e88ed3b37b86e5c00 315 Gene3D G3DSA:3.30.60.50 174 221 1.3E-78 T 10-10-2018 VF_1252 ac0b047aee6d1e0e88ed3b37b86e5c00 315 SUPERFAMILY SSF89733 1 302 2.35E-81 T 10-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 VF_1252 ac0b047aee6d1e0e88ed3b37b86e5c00 315 Pfam PF02615 Malate/L-lactate dehydrogenase 4 293 1.2E-78 T 10-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 VF_0769 2f84a5406013a87df7a123fd1858c9c7 284 Gene3D G3DSA:3.40.50.150 89 281 8.2E-60 T 10-10-2018 VF_0769 2f84a5406013a87df7a123fd1858c9c7 284 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 27 276 6.0E-93 T 10-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 VF_0769 2f84a5406013a87df7a123fd1858c9c7 284 SUPERFAMILY SSF53335 17 278 1.38E-61 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_0769 2f84a5406013a87df7a123fd1858c9c7 284 Pfam PF13847 Methyltransferase domain 115 252 4.9E-23 T 10-10-2018 IPR025714 Methyltransferase domain VF_0769 2f84a5406013a87df7a123fd1858c9c7 284 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 185 191 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VF_0769 2f84a5406013a87df7a123fd1858c9c7 284 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 5 280 46.259 T 10-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 VF_0769 2f84a5406013a87df7a123fd1858c9c7 284 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 7 280 2.6E-79 T 10-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 VF_0769 2f84a5406013a87df7a123fd1858c9c7 284 Gene3D G3DSA:1.10.8.10 4 88 7.0E-24 T 10-10-2018 VF_1789 6789c95710c151e9bcb9c5a6188416a8 697 Gene3D G3DSA:1.10.287.950 365 697 2.7E-69 T 10-10-2018 VF_1789 6789c95710c151e9bcb9c5a6188416a8 697 Gene3D G3DSA:3.30.450.20 65 321 2.6E-25 T 10-10-2018 VF_1789 6789c95710c151e9bcb9c5a6188416a8 697 SUPERFAMILY SSF58104 387 696 2.09E-74 T 10-10-2018 VF_1789 6789c95710c151e9bcb9c5a6188416a8 697 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 498 661 9.2E-41 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1789 6789c95710c151e9bcb9c5a6188416a8 697 SMART SM00283 434 695 1.0E-64 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1789 6789c95710c151e9bcb9c5a6188416a8 697 Gene3D G3DSA:3.30.450.20 72 225 2.6E-25 T 10-10-2018 VF_1789 6789c95710c151e9bcb9c5a6188416a8 697 SMART SM00304 365 419 2.5E-8 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_0033 5daf5a778a1ccddfaa3ecfa3bba7b6d5 219 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 9 206 19.263 T 10-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_0033 5daf5a778a1ccddfaa3ecfa3bba7b6d5 219 Pfam PF02581 Thiamine monophosphate synthase 19 188 2.7E-54 T 10-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_0033 5daf5a778a1ccddfaa3ecfa3bba7b6d5 219 SUPERFAMILY SSF51391 11 204 1.15E-60 T 10-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_0033 5daf5a778a1ccddfaa3ecfa3bba7b6d5 219 Gene3D G3DSA:3.20.20.70 4 211 1.9E-58 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0033 5daf5a778a1ccddfaa3ecfa3bba7b6d5 219 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 21 200 3.2E-51 T 10-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VF_0615 6a0bbebcc4be6ce6095ae9ba43966028 241 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 239 2.9E-81 T 10-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 VF_0615 6a0bbebcc4be6ce6095ae9ba43966028 241 Pfam PF00588 SpoU rRNA Methylase family 5 154 3.0E-33 T 10-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VF_0615 6a0bbebcc4be6ce6095ae9ba43966028 241 Gene3D G3DSA:3.40.1280.10 1 164 3.4E-62 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VF_0615 6a0bbebcc4be6ce6095ae9ba43966028 241 SUPERFAMILY SSF75217 5 169 8.5E-37 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases VF_0615 6a0bbebcc4be6ce6095ae9ba43966028 241 Gene3D G3DSA:1.10.8.590 165 241 4.2E-27 T 10-10-2018 VF_0615 6a0bbebcc4be6ce6095ae9ba43966028 241 PIRSF PIRSF004808 1 241 4.9E-72 T 10-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 VF_0690 5b7d020a18112a3e7284400de698e296 613 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 96 487 2.1E-60 T 10-10-2018 IPR000914 Solute-binding protein family 5 domain VF_0690 5b7d020a18112a3e7284400de698e296 613 SUPERFAMILY SSF53850 49 572 2.71E-93 T 10-10-2018 VF_0690 5b7d020a18112a3e7284400de698e296 613 PIRSF PIRSF002741 2 568 1.1E-68 T 10-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VF_0690 5b7d020a18112a3e7284400de698e296 613 Gene3D G3DSA:3.40.190.10 20 325 1.0E-43 T 10-10-2018 VF_0690 5b7d020a18112a3e7284400de698e296 613 Gene3D G3DSA:3.10.105.10 326 545 1.1E-41 T 10-10-2018 VF_0133 c94e8e669020649583fdc2f2b4a12f98 342 SUPERFAMILY SSF53756 3 340 1.73E-59 T 10-10-2018 VF_0133 c94e8e669020649583fdc2f2b4a12f98 342 Gene3D G3DSA:3.40.50.2000 73 335 2.0E-52 T 10-10-2018 VF_0133 c94e8e669020649583fdc2f2b4a12f98 342 Gene3D G3DSA:3.40.50.2000 149 322 2.0E-52 T 10-10-2018 VF_0133 c94e8e669020649583fdc2f2b4a12f98 342 Pfam PF00534 Glycosyl transferases group 1 165 317 2.1E-31 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 VF_2220 905d1210ad30ab9b7701fa4600285ff6 197 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 3 40 1.0E-14 T 10-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 VF_2220 905d1210ad30ab9b7701fa4600285ff6 197 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 9 190 2.6E-72 T 10-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 VF_2220 905d1210ad30ab9b7701fa4600285ff6 197 Gene3D G3DSA:2.102.10.10 43 190 6.3E-46 T 10-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VF_2220 905d1210ad30ab9b7701fa4600285ff6 197 SUPERFAMILY SSF50022 30 189 1.85E-44 T 10-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VF_2220 905d1210ad30ab9b7701fa4600285ff6 197 Gene3D G3DSA:1.20.5.510 1 40 2.4E-5 T 10-10-2018 VF_2220 905d1210ad30ab9b7701fa4600285ff6 197 Pfam PF00355 Rieske [2Fe-2S] domain 55 174 3.0E-11 T 10-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 VF_2220 905d1210ad30ab9b7701fa4600285ff6 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 119 130 1.7E-7 T 10-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 VF_2220 905d1210ad30ab9b7701fa4600285ff6 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 149 161 1.7E-7 T 10-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 VF_2220 905d1210ad30ab9b7701fa4600285ff6 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 162 174 1.7E-7 T 10-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 VF_1451 988e9f0127fc1f98e9723d49a0300179 889 SUPERFAMILY SSF56219 484 862 3.53E-34 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VF_1451 988e9f0127fc1f98e9723d49a0300179 889 SUPERFAMILY SSF74853 18 131 2.62E-6 T 10-10-2018 IPR036415 Lamin tail domain superfamily VF_1451 988e9f0127fc1f98e9723d49a0300179 889 Pfam PF00932 Lamin Tail Domain 26 134 1.4E-11 T 10-10-2018 IPR001322 Lamin tail domain VF_1451 988e9f0127fc1f98e9723d49a0300179 889 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 489 821 3.1E-7 T 10-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase VF_1451 988e9f0127fc1f98e9723d49a0300179 889 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 866 886 0.0023 T 10-10-2018 IPR020008 GlyGly-CTERM domain VF_A0525 05c7107a9ff07de678f92b8f52c8813c 255 Pfam PF12833 Helix-turn-helix domain 175 250 1.8E-13 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0525 05c7107a9ff07de678f92b8f52c8813c 255 Gene3D G3DSA:1.10.10.60 149 253 1.8E-18 T 10-10-2018 VF_A0525 05c7107a9ff07de678f92b8f52c8813c 255 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 203 245 - T 10-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VF_A0525 05c7107a9ff07de678f92b8f52c8813c 255 SUPERFAMILY SSF46689 202 251 1.39E-8 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0525 05c7107a9ff07de678f92b8f52c8813c 255 SMART SM00342 167 249 2.9E-17 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0452 b8520c4532a31aad4669cdce24f29db5 350 PIRSF PIRSF036979 27 350 3.6E-25 T 10-10-2018 IPR006035 Ureohydrolase GO:0046872 VF_A0452 b8520c4532a31aad4669cdce24f29db5 350 Hamap MF_00737 Formimidoylglutamase [hutG]. 12 344 41.19 T 10-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 VF_A0452 b8520c4532a31aad4669cdce24f29db5 350 Gene3D G3DSA:3.40.800.10 8 350 4.6E-118 T 10-10-2018 VF_A0452 b8520c4532a31aad4669cdce24f29db5 350 TIGRFAM TIGR01227 hutG: formimidoylglutamase 17 343 1.3E-92 T 10-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 VF_A0452 b8520c4532a31aad4669cdce24f29db5 350 Pfam PF00491 Arginase family 47 342 2.5E-65 T 10-10-2018 IPR006035 Ureohydrolase GO:0046872 VF_A0452 b8520c4532a31aad4669cdce24f29db5 350 SUPERFAMILY SSF52768 17 346 9.54E-78 T 10-10-2018 IPR023696 Ureohydrolase domain superfamily VF_A0452 b8520c4532a31aad4669cdce24f29db5 350 ProSitePatterns PS01053 Arginase family signature. 267 288 - T 10-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 VF_A0452 b8520c4532a31aad4669cdce24f29db5 350 PRINTS PR00116 Arginase signature 264 293 1.8E-5 T 10-10-2018 IPR006035 Ureohydrolase GO:0046872 VF_A0452 b8520c4532a31aad4669cdce24f29db5 350 PRINTS PR00116 Arginase signature 126 141 1.8E-5 T 10-10-2018 IPR006035 Ureohydrolase GO:0046872 VF_1437 ad6cf340651249f2be59f48b2d96bb59 201 Pfam PF13505 Outer membrane protein beta-barrel domain 4 157 2.7E-7 T 10-10-2018 IPR027385 Outer membrane protein beta-barrel VF_1437 ad6cf340651249f2be59f48b2d96bb59 201 SUPERFAMILY SSF56925 26 156 3.14E-5 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VF_0879 a53eaf2bf7b0fa0e518fc0dc71df11ac 533 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 30 518 1.7E-119 T 10-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 VF_0879 a53eaf2bf7b0fa0e518fc0dc71df11ac 533 SUPERFAMILY SSF103473 1 522 1.7E-65 T 10-10-2018 IPR036259 MFS transporter superfamily VF_0879 a53eaf2bf7b0fa0e518fc0dc71df11ac 533 Pfam PF07690 Major Facilitator Superfamily 33 426 8.8E-45 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_0879 a53eaf2bf7b0fa0e518fc0dc71df11ac 533 Gene3D G3DSA:1.20.1720.10 32 229 2.5E-41 T 10-10-2018 VF_1180 b49f857250387c76cb46270a7aada100 509 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 330 491 5.8E-48 T 10-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 VF_1180 b49f857250387c76cb46270a7aada100 509 Pfam PF05683 Fumarase C-terminus 294 494 2.0E-79 T 10-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 VF_1180 b49f857250387c76cb46270a7aada100 509 PIRSF PIRSF001394 2 509 9.3E-212 T 10-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 VF_1180 b49f857250387c76cb46270a7aada100 509 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 18 289 6.6E-63 T 10-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 VF_1180 b49f857250387c76cb46270a7aada100 509 Gene3D G3DSA:3.20.130.10 313 494 1.8E-59 T 10-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 VF_1180 b49f857250387c76cb46270a7aada100 509 Pfam PF05681 Fumarate hydratase (Fumerase) 17 290 1.1E-98 T 10-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 VF_1180 b49f857250387c76cb46270a7aada100 509 SUPERFAMILY SSF117457 322 493 2.75E-60 T 10-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 VF_A0042 a5cfeaa9e5f457f65d0b9ab9262c0ed2 464 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 426 9.7E-139 T 10-10-2018 VF_A0042 a5cfeaa9e5f457f65d0b9ab9262c0ed2 464 ProSitePatterns PS00942 glpT family of transporters signature. 156 172 - T 10-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 VF_A0042 a5cfeaa9e5f457f65d0b9ab9262c0ed2 464 SUPERFAMILY SSF103473 17 447 9.02E-60 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0042 a5cfeaa9e5f457f65d0b9ab9262c0ed2 464 Gene3D G3DSA:1.20.1250.20 246 459 3.3E-37 T 10-10-2018 VF_A0042 a5cfeaa9e5f457f65d0b9ab9262c0ed2 464 PIRSF PIRSF002808 9 460 1.0E-106 T 10-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 VF_A0042 a5cfeaa9e5f457f65d0b9ab9262c0ed2 464 Pfam PF07690 Major Facilitator Superfamily 35 396 1.5E-34 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_A0042 a5cfeaa9e5f457f65d0b9ab9262c0ed2 464 Gene3D G3DSA:1.20.1250.20 29 230 5.1E-34 T 10-10-2018 VF_1778 167dbb6889a4c2795577270e03a00ec4 539 Gene3D G3DSA:1.10.287.950 208 539 1.4E-67 T 10-10-2018 VF_1778 167dbb6889a4c2795577270e03a00ec4 539 SMART SM00283 277 538 1.1E-65 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1778 167dbb6889a4c2795577270e03a00ec4 539 SMART SM00304 209 262 1.4E-6 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_1778 167dbb6889a4c2795577270e03a00ec4 539 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 338 500 7.1E-41 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1778 167dbb6889a4c2795577270e03a00ec4 539 Pfam PF00672 HAMP domain 210 257 2.4E-7 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_1778 167dbb6889a4c2795577270e03a00ec4 539 SUPERFAMILY SSF58104 235 539 8.11E-68 T 10-10-2018 VF_0556 53658cb37a800a9abaa8c91de6b090c9 120 Pfam PF07238 PilZ domain 3 100 3.7E-14 T 10-10-2018 IPR009875 PilZ domain GO:0035438 VF_0556 53658cb37a800a9abaa8c91de6b090c9 120 PIRSF PIRSF028141 1 120 8.4E-42 T 10-10-2018 IPR027021 Cyclic di-GMP binding protein, PA4608 type VF_0556 53658cb37a800a9abaa8c91de6b090c9 120 Gene3D G3DSA:2.40.10.220 1 120 1.5E-29 T 10-10-2018 VF_0556 53658cb37a800a9abaa8c91de6b090c9 120 SUPERFAMILY SSF141371 1 118 5.1E-31 T 10-10-2018 VF_2398 0a7df60b1971e645cfe4a4110f14943c 356 Pfam PF00571 CBS domain 262 313 3.5E-6 T 10-10-2018 IPR000644 CBS domain VF_2398 0a7df60b1971e645cfe4a4110f14943c 356 Gene3D G3DSA:3.10.580.10 186 315 1.0E-37 T 10-10-2018 VF_2398 0a7df60b1971e645cfe4a4110f14943c 356 Pfam PF01595 Domain of unknown function DUF21 8 177 3.1E-28 T 10-10-2018 IPR002550 CNNM, transmembrane domain VF_2398 0a7df60b1971e645cfe4a4110f14943c 356 SUPERFAMILY SSF54631 181 315 5.86E-25 T 10-10-2018 VF_1247 37ccee3424231ecd7ab223441e17e6a7 143 Gene3D G3DSA:3.10.350.10 86 143 7.4E-16 T 10-10-2018 IPR036779 LysM domain superfamily VF_1247 37ccee3424231ecd7ab223441e17e6a7 143 SMART SM00257 98 143 7.6E-13 T 10-10-2018 IPR018392 LysM domain VF_1247 37ccee3424231ecd7ab223441e17e6a7 143 Pfam PF01476 LysM domain 99 142 4.3E-12 T 10-10-2018 IPR018392 LysM domain VF_1247 37ccee3424231ecd7ab223441e17e6a7 143 SUPERFAMILY SSF54106 98 142 9.68E-10 T 10-10-2018 VF_A0762 8a4ef694c4c53053b43ab9bd9b812e46 432 Gene3D G3DSA:1.10.405.10 123 210 2.2E-28 T 10-10-2018 VF_A0762 8a4ef694c4c53053b43ab9bd9b812e46 432 Gene3D G3DSA:3.90.660.10 51 399 2.2E-28 T 10-10-2018 VF_A0762 8a4ef694c4c53053b43ab9bd9b812e46 432 Gene3D G3DSA:3.50.50.60 17 304 2.2E-28 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0762 8a4ef694c4c53053b43ab9bd9b812e46 432 SUPERFAMILY SSF51905 15 426 2.49E-50 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0762 8a4ef694c4c53053b43ab9bd9b812e46 432 Pfam PF01593 Flavin containing amine oxidoreductase 24 281 8.4E-22 T 10-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 VF_2491 e0a41b82f76a40917756397e7700dfe0 435 Gene3D G3DSA:3.30.1300.30 333 435 4.8E-17 T 10-10-2018 VF_2491 e0a41b82f76a40917756397e7700dfe0 435 SUPERFAMILY SSF54523 342 435 4.55E-13 T 10-10-2018 VF_2491 e0a41b82f76a40917756397e7700dfe0 435 Pfam PF03895 YadA-like membrane anchor domain 379 435 9.6E-14 T 10-10-2018 IPR005594 YadA-like, C-terminal VF_1114 6a5a131b5b2edfbcec83d51f0d253e0e 300 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 187 204 - T 10-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 VF_1114 6a5a131b5b2edfbcec83d51f0d253e0e 300 Gene3D G3DSA:1.10.8.1080 221 299 6.4E-31 T 10-10-2018 VF_1114 6a5a131b5b2edfbcec83d51f0d253e0e 300 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 4 297 43.342 T 10-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 VF_1114 6a5a131b5b2edfbcec83d51f0d253e0e 300 Gene3D G3DSA:3.40.50.10490 1 220 1.4E-83 T 10-10-2018 VF_1114 6a5a131b5b2edfbcec83d51f0d253e0e 300 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 8 298 9.4E-130 T 10-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 VF_1114 6a5a131b5b2edfbcec83d51f0d253e0e 300 SUPERFAMILY SSF53697 8 251 1.48E-71 T 10-10-2018 VF_1114 6a5a131b5b2edfbcec83d51f0d253e0e 300 Pfam PF13580 SIS domain 44 166 2.9E-9 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VF_1910 176640209d94180e2631a7b2682e888c 109 Pfam PF13698 Domain of unknown function (DUF4156) 24 108 3.6E-27 T 10-10-2018 IPR025294 Protein of unknown function DUF4156 VF_1932 73b9343259b11a03c79d5702363aa8fd 815 Pfam PF09317 Domain of unknown function (DUF1974) 513 795 6.1E-113 T 10-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 VF_1932 73b9343259b11a03c79d5702363aa8fd 815 Gene3D G3DSA:1.10.540.10 121 234 7.9E-103 T 10-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 VF_1932 73b9343259b11a03c79d5702363aa8fd 815 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 236 327 1.4E-8 T 10-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 VF_1932 73b9343259b11a03c79d5702363aa8fd 815 SUPERFAMILY SSF47203 359 506 1.13E-24 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 VF_1932 73b9343259b11a03c79d5702363aa8fd 815 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 359 506 8.1E-15 T 10-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 VF_1932 73b9343259b11a03c79d5702363aa8fd 815 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 125 232 2.1E-16 T 10-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 VF_1932 73b9343259b11a03c79d5702363aa8fd 815 SUPERFAMILY SSF56645 119 354 1.44E-45 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 VF_1932 73b9343259b11a03c79d5702363aa8fd 815 Gene3D G3DSA:2.40.110.10 235 358 7.9E-103 T 10-10-2018 VF_1932 73b9343259b11a03c79d5702363aa8fd 815 Gene3D G3DSA:1.20.140.10 359 506 7.9E-103 T 10-10-2018 VF_0686 e734d5a1d69c752a6e68c6297134880c 367 SMART SM00930 288 363 9.9E-29 T 10-10-2018 IPR018449 NIL domain VF_0686 e734d5a1d69c752a6e68c6297134880c 367 SMART SM00382 53 258 4.1E-14 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0686 e734d5a1d69c752a6e68c6297134880c 367 Gene3D G3DSA:3.40.50.300 24 255 4.3E-73 T 10-10-2018 VF_0686 e734d5a1d69c752a6e68c6297134880c 367 SUPERFAMILY SSF55021 271 366 3.78E-26 T 10-10-2018 VF_0686 e734d5a1d69c752a6e68c6297134880c 367 Pfam PF00005 ABC transporter 44 192 4.6E-35 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0686 e734d5a1d69c752a6e68c6297134880c 367 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0686 e734d5a1d69c752a6e68c6297134880c 367 SUPERFAMILY SSF52540 24 263 4.46E-82 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0686 e734d5a1d69c752a6e68c6297134880c 367 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 24 366 9.7E-189 T 10-10-2018 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 VF_0686 e734d5a1d69c752a6e68c6297134880c 367 Gene3D G3DSA:3.30.70.260 256 366 6.7E-38 T 10-10-2018 VF_0686 e734d5a1d69c752a6e68c6297134880c 367 Pfam PF09383 NIL domain 291 362 1.3E-21 T 10-10-2018 IPR018449 NIL domain VF_1342 898c3465ed4e835d497b458ebd279746 104 Pfam PF07883 Cupin domain 45 102 3.6E-8 T 10-10-2018 IPR013096 Cupin 2, conserved barrel VF_1342 898c3465ed4e835d497b458ebd279746 104 Gene3D G3DSA:2.60.120.10 14 104 3.2E-35 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_1342 898c3465ed4e835d497b458ebd279746 104 SUPERFAMILY SSF51182 2 103 1.71E-17 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_2090 fad1522bb17d5e8a006d86d5bb1f3f17 161 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 145 2.1E-33 T 10-10-2018 VF_2090 fad1522bb17d5e8a006d86d5bb1f3f17 161 PIRSF PIRSF004923 1 155 1.3E-48 T 10-10-2018 IPR026268 Protein RseC VF_0474 ffd7be89aef926d28c402337d30d1533 468 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 21 444 3.6E-94 T 10-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_0474 ffd7be89aef926d28c402337d30d1533 468 Gene3D G3DSA:3.40.710.10 19 85 5.0E-8 T 10-10-2018 VF_0474 ffd7be89aef926d28c402337d30d1533 468 Gene3D G3DSA:3.40.710.10 254 465 1.3E-50 T 10-10-2018 VF_0474 ffd7be89aef926d28c402337d30d1533 468 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 273 295 3.0E-26 T 10-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_0474 ffd7be89aef926d28c402337d30d1533 468 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 57 76 3.0E-26 T 10-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_0474 ffd7be89aef926d28c402337d30d1533 468 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 347 361 3.0E-26 T 10-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_0474 ffd7be89aef926d28c402337d30d1533 468 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 332 346 3.0E-26 T 10-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_0474 ffd7be89aef926d28c402337d30d1533 468 Gene3D G3DSA:3.50.80.20 86 171 1.2E-7 T 10-10-2018 VF_0474 ffd7be89aef926d28c402337d30d1533 468 SUPERFAMILY SSF56601 28 437 2.89E-79 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VF_0474 ffd7be89aef926d28c402337d30d1533 468 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 48 432 3.1E-92 T 10-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VF_0850 01f5d51ec1b44869becbed75e0b9ba81 124 Gene3D G3DSA:3.10.129.10 5 124 8.8E-36 T 10-10-2018 VF_0850 01f5d51ec1b44869becbed75e0b9ba81 124 Pfam PF07977 FabA-like domain 34 94 5.6E-5 T 10-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VF_0850 01f5d51ec1b44869becbed75e0b9ba81 124 PIRSF PIRSF030962 1 124 1.1E-38 T 10-10-2018 IPR016962 Dehydrase, ECs4332, predicted KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VF_0850 01f5d51ec1b44869becbed75e0b9ba81 124 SUPERFAMILY SSF54637 4 101 1.49E-15 T 10-10-2018 IPR029069 HotDog domain superfamily VF_A0146 1d73d39f8b6286287852bb04ffea9eb5 73 Pfam PF03692 Putative zinc- or iron-chelating domain 15 57 1.1E-7 T 10-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein VF_A0906 baa05f467883b2979aecbc1b4a3d4e40 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 379 2.9E-78 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VF_A0906 baa05f467883b2979aecbc1b4a3d4e40 384 Gene3D G3DSA:2.40.50.100 62 212 1.7E-88 T 10-10-2018 VF_A0906 baa05f467883b2979aecbc1b4a3d4e40 384 Gene3D G3DSA:2.40.420.20 309 377 1.7E-88 T 10-10-2018 VF_A0906 baa05f467883b2979aecbc1b4a3d4e40 384 Pfam PF13533 Biotin-lipoyl like 63 110 2.7E-12 T 10-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VF_A0906 baa05f467883b2979aecbc1b4a3d4e40 384 Gene3D G3DSA:1.10.287.470 97 170 1.7E-88 T 10-10-2018 VF_A0906 baa05f467883b2979aecbc1b4a3d4e40 384 Gene3D G3DSA:2.40.30.170 49 308 1.7E-88 T 10-10-2018 VF_A0906 baa05f467883b2979aecbc1b4a3d4e40 384 SUPERFAMILY SSF111369 51 301 3.27E-56 T 10-10-2018 VF_1904 385d5fe57199aca1bc30eb35bdcbcfe0 157 SUPERFAMILY SSF48695 59 154 4.05E-41 T 10-10-2018 IPR036280 Multiheme cytochrome superfamily VF_1904 385d5fe57199aca1bc30eb35bdcbcfe0 157 Gene3D G3DSA:1.10.1130.10 71 138 8.1E-29 T 10-10-2018 VF_1904 385d5fe57199aca1bc30eb35bdcbcfe0 157 PIRSF PIRSF006105 1 157 1.8E-46 T 10-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB VF_1904 385d5fe57199aca1bc30eb35bdcbcfe0 157 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 38 151 1.1E-49 T 10-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB VF_A0320 e54640c49a5268145ce96d10864194c6 220 SUPERFAMILY SSF48613 3 216 1.13E-64 T 10-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 VF_A0320 e54640c49a5268145ce96d10864194c6 220 Gene3D G3DSA:1.20.910.10 1 219 6.3E-62 T 10-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 VF_A0320 e54640c49a5268145ce96d10864194c6 220 Pfam PF03070 TENA/THI-4/PQQC family 9 217 8.3E-45 T 10-10-2018 IPR004305 Thiaminase-2/PQQC VF_A0320 e54640c49a5268145ce96d10864194c6 220 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 11 215 1.7E-41 T 10-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 VF_0135 d52c021d702e00d63663996c62d74fff 347 Gene3D G3DSA:3.40.50.2000 164 347 3.6E-43 T 10-10-2018 VF_0135 d52c021d702e00d63663996c62d74fff 347 Gene3D G3DSA:3.40.50.2000 6 156 6.3E-24 T 10-10-2018 VF_0135 d52c021d702e00d63663996c62d74fff 347 SUPERFAMILY SSF53756 10 344 1.32E-84 T 10-10-2018 VF_0135 d52c021d702e00d63663996c62d74fff 347 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 74 310 2.3E-59 T 10-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 VF_1839 d0335cbeb76870c228a1db8aaabb5db2 376 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 353 1.9E-133 T 10-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 VF_1839 d0335cbeb76870c228a1db8aaabb5db2 376 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 347 1.7E-122 T 10-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VF_1839 d0335cbeb76870c228a1db8aaabb5db2 376 SUPERFAMILY SSF160544 250 355 6.54E-40 T 10-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal VF_1839 d0335cbeb76870c228a1db8aaabb5db2 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 1.8E-39 T 10-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VF_1839 d0335cbeb76870c228a1db8aaabb5db2 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 1.8E-39 T 10-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VF_1839 d0335cbeb76870c228a1db8aaabb5db2 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 1.8E-39 T 10-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VF_1839 d0335cbeb76870c228a1db8aaabb5db2 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 1.8E-39 T 10-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VF_1839 d0335cbeb76870c228a1db8aaabb5db2 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 1.8E-39 T 10-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VF_1839 d0335cbeb76870c228a1db8aaabb5db2 376 Gene3D G3DSA:3.40.1690.10 218 359 4.3E-57 T 10-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal VF_1945 819edac51f5d99fa54a2c161e51eaf65 456 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 382 427 2.9E-11 T 10-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VF_1945 819edac51f5d99fa54a2c161e51eaf65 456 Gene3D G3DSA:1.20.59.20 246 330 3.6E-23 T 10-10-2018 VF_1945 819edac51f5d99fa54a2c161e51eaf65 456 Pfam PF09179 TilS substrate binding domain 260 327 8.8E-15 T 10-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VF_1945 819edac51f5d99fa54a2c161e51eaf65 456 SUPERFAMILY SSF52402 28 242 7.5E-60 T 10-10-2018 VF_1945 819edac51f5d99fa54a2c161e51eaf65 456 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 20 319 22.872 T 10-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VF_1945 819edac51f5d99fa54a2c161e51eaf65 456 Pfam PF01171 PP-loop family 34 212 7.5E-58 T 10-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 VF_1945 819edac51f5d99fa54a2c161e51eaf65 456 SUPERFAMILY SSF82829 249 331 1.23E-20 T 10-10-2018 VF_1945 819edac51f5d99fa54a2c161e51eaf65 456 SUPERFAMILY SSF56037 342 452 8.63E-27 T 10-10-2018 VF_1945 819edac51f5d99fa54a2c161e51eaf65 456 SMART SM00977 381 450 1.2E-21 T 10-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VF_1945 819edac51f5d99fa54a2c161e51eaf65 456 Pfam PF11734 TilS substrate C-terminal domain 381 450 6.1E-24 T 10-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VF_1945 819edac51f5d99fa54a2c161e51eaf65 456 Gene3D G3DSA:3.40.50.620 26 245 6.3E-69 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_1945 819edac51f5d99fa54a2c161e51eaf65 456 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 34 215 8.2E-55 T 10-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VF_0622 97111a185da2a82cb9d8c1cfe56e3648 112 SUPERFAMILY SSF54292 4 105 1.04E-31 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VF_0622 97111a185da2a82cb9d8c1cfe56e3648 112 Gene3D G3DSA:3.10.20.30 1 112 5.0E-36 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_0622 97111a185da2a82cb9d8c1cfe56e3648 112 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 110 2.2E-59 T 10-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 VF_0622 97111a185da2a82cb9d8c1cfe56e3648 112 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 10-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 VF_0622 97111a185da2a82cb9d8c1cfe56e3648 112 PRINTS PR00355 Adrenodoxin signature 42 52 2.0E-10 T 10-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 VF_0622 97111a185da2a82cb9d8c1cfe56e3648 112 PRINTS PR00355 Adrenodoxin signature 60 74 2.0E-10 T 10-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 VF_0622 97111a185da2a82cb9d8c1cfe56e3648 112 PRINTS PR00355 Adrenodoxin signature 83 91 2.0E-10 T 10-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 VF_0622 97111a185da2a82cb9d8c1cfe56e3648 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 91 7.8E-15 T 10-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VF_A0421 f67da4dfc96a51453b75e254f3b736fe 306 SMART SM01131 179 305 2.7E-56 T 10-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 VF_A0421 f67da4dfc96a51453b75e254f3b736fe 306 Pfam PF02833 DHHA2 domain 180 304 3.6E-20 T 10-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 VF_A0421 f67da4dfc96a51453b75e254f3b736fe 306 SUPERFAMILY SSF64182 3 305 7.72E-73 T 10-10-2018 IPR038763 DHH phosphoesterase superfamily VF_A0421 f67da4dfc96a51453b75e254f3b736fe 306 Pfam PF01368 DHH family 3 143 5.9E-21 T 10-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 VF_A0421 f67da4dfc96a51453b75e254f3b736fe 306 Gene3D G3DSA:3.90.1640.10 1 187 2.4E-68 T 10-10-2018 VF_A0421 f67da4dfc96a51453b75e254f3b736fe 306 Gene3D G3DSA:3.10.310.20 190 306 7.2E-34 T 10-10-2018 IPR038222 DHHA2 domain superfamily KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 VF_A1094 93fc0d287f83880d0fc39de7eb411126 69 SUPERFAMILY SSF50249 3 68 3.0E-26 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_A1094 93fc0d287f83880d0fc39de7eb411126 69 SMART SM00357 5 69 2.9E-32 T 10-10-2018 IPR011129 Cold shock domain GO:0003676 VF_A1094 93fc0d287f83880d0fc39de7eb411126 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 10-10-2018 IPR019844 Cold-shock conserved site VF_A1094 93fc0d287f83880d0fc39de7eb411126 69 PIRSF PIRSF002599 1 69 5.0E-26 T 10-10-2018 IPR012156 Cold shock, CspA GO:0003676 VF_A1094 93fc0d287f83880d0fc39de7eb411126 69 Gene3D G3DSA:2.40.50.140 1 68 1.0E-30 T 10-10-2018 VF_A1094 93fc0d287f83880d0fc39de7eb411126 69 PRINTS PR00050 Cold shock protein signature 6 21 7.4E-18 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_A1094 93fc0d287f83880d0fc39de7eb411126 69 PRINTS PR00050 Cold shock protein signature 42 60 7.4E-18 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_A1094 93fc0d287f83880d0fc39de7eb411126 69 PRINTS PR00050 Cold shock protein signature 27 36 7.4E-18 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_A1094 93fc0d287f83880d0fc39de7eb411126 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 1.3E-31 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VF_1475 c9aa6414adfc2c924b12f7803e3f9169 299 Pfam PF03466 LysR substrate binding domain 123 280 4.4E-9 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1475 c9aa6414adfc2c924b12f7803e3f9169 299 Gene3D G3DSA:1.10.10.10 2 83 3.0E-12 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1475 c9aa6414adfc2c924b12f7803e3f9169 299 Gene3D G3DSA:3.40.190.290 93 276 4.9E-15 T 10-10-2018 VF_1475 c9aa6414adfc2c924b12f7803e3f9169 299 SUPERFAMILY SSF53850 93 294 4.5E-13 T 10-10-2018 VF_1475 c9aa6414adfc2c924b12f7803e3f9169 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 9.1E-11 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1475 c9aa6414adfc2c924b12f7803e3f9169 299 SUPERFAMILY SSF46785 3 80 8.16E-13 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1843 082d7b66776abfc40794268fd2ac76ac 128 Pfam PF04347 Flagellar biosynthesis protein, FliO 43 123 1.5E-19 T 10-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 VF_1843 082d7b66776abfc40794268fd2ac76ac 128 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 31 100 2.0E-23 T 10-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 VF_1228 0842dd28d35960c69fbace1ca0bb7eca 175 Gene3D G3DSA:2.30.110.10 11 175 1.1E-53 T 10-10-2018 IPR012349 FMN-binding split barrel GO:0048037 VF_1228 0842dd28d35960c69fbace1ca0bb7eca 175 TIGRFAM TIGR04110 heme_HutZ: heme utilization protein HutZ 5 171 2.2E-89 T 10-10-2018 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain VF_1228 0842dd28d35960c69fbace1ca0bb7eca 175 PIRSF PIRSF004633 1 175 1.1E-74 T 10-10-2018 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain VF_1228 0842dd28d35960c69fbace1ca0bb7eca 175 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 15 106 4.4E-16 T 10-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VF_1228 0842dd28d35960c69fbace1ca0bb7eca 175 SUPERFAMILY SSF50475 11 162 1.55E-35 T 10-10-2018 VF_A0628 809b84667d2813ab37db9365f02a5eed 288 Pfam PF02548 Ketopantoate hydroxymethyltransferase 28 283 1.7E-104 T 10-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VF_A0628 809b84667d2813ab37db9365f02a5eed 288 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 29 288 40.972 T 10-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VF_A0628 809b84667d2813ab37db9365f02a5eed 288 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 26 288 3.1E-109 T 10-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VF_A0628 809b84667d2813ab37db9365f02a5eed 288 SUPERFAMILY SSF51621 28 288 2.3E-102 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VF_A0628 809b84667d2813ab37db9365f02a5eed 288 Gene3D G3DSA:3.20.20.60 17 288 6.2E-103 T 10-10-2018 VF_A0628 809b84667d2813ab37db9365f02a5eed 288 PIRSF PIRSF000388 19 288 9.5E-100 T 10-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VF_2576 db1ee690446b2277da7c189f627c9a91 70 Pfam PF02597 ThiS family 9 70 2.8E-7 T 10-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 VF_2576 db1ee690446b2277da7c189f627c9a91 70 SUPERFAMILY SSF54285 5 70 6.73E-13 T 10-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp VF_2576 db1ee690446b2277da7c189f627c9a91 70 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 7 70 5.8E-15 T 10-10-2018 IPR010035 ThiS, thiamine-biosynthesis VF_2576 db1ee690446b2277da7c189f627c9a91 70 Gene3D G3DSA:3.10.20.30 5 70 2.8E-15 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_0995 65faeb7b24a1afe61b853c115f70d6a2 440 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 2 439 3.1E-147 T 10-10-2018 IPR010263 Type VI secretion protein, VC_A0114 VF_0995 65faeb7b24a1afe61b853c115f70d6a2 440 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 16 437 6.9E-129 T 10-10-2018 IPR010263 Type VI secretion protein, VC_A0114 VF_A0463 f233c3a7250ab507fdcb171d41ca5621 238 Pfam PF00005 ABC transporter 25 173 1.0E-34 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0463 f233c3a7250ab507fdcb171d41ca5621 238 Gene3D G3DSA:3.40.50.300 4 238 2.3E-65 T 10-10-2018 VF_A0463 f233c3a7250ab507fdcb171d41ca5621 238 SUPERFAMILY SSF52540 5 227 1.13E-69 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0463 f233c3a7250ab507fdcb171d41ca5621 238 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0463 f233c3a7250ab507fdcb171d41ca5621 238 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 5 223 6.6E-107 T 10-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 VF_A0463 f233c3a7250ab507fdcb171d41ca5621 238 SMART SM00382 34 222 1.0E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1374 051bc43878472d206234f42c84d9a3e4 318 SUPERFAMILY SSF50891 189 298 8.34E-9 T 10-10-2018 IPR029000 Cyclophilin-like domain superfamily VF_1374 051bc43878472d206234f42c84d9a3e4 318 SMART SM00797 24 313 4.6E-142 T 10-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B VF_1374 051bc43878472d206234f42c84d9a3e4 318 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 3 311 3.0E-82 T 10-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B VF_1374 051bc43878472d206234f42c84d9a3e4 318 Gene3D G3DSA:2.40.100.10 186 317 1.2E-43 T 10-10-2018 IPR029000 Cyclophilin-like domain superfamily VF_1374 051bc43878472d206234f42c84d9a3e4 318 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 25 295 5.6E-85 T 10-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B VF_A0050 f0a3176fd836fb97849c44c495fc8695 321 Pfam PF03773 Predicted permease 25 319 8.2E-49 T 10-10-2018 IPR005524 Predicted permease DUF318 VF_2037 af2469daa4375c9ed6d71628cd332bc3 215 SMART SM00530 7 62 6.3E-12 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_2037 af2469daa4375c9ed6d71628cd332bc3 215 SUPERFAMILY SSF51306 90 211 2.75E-29 T 10-10-2018 IPR036286 LexA/Signal peptidase-like superfamily VF_2037 af2469daa4375c9ed6d71628cd332bc3 215 Pfam PF00717 Peptidase S24-like 130 199 3.0E-17 T 10-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C VF_2037 af2469daa4375c9ed6d71628cd332bc3 215 Pfam PF01381 Helix-turn-helix 11 62 3.4E-11 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_2037 af2469daa4375c9ed6d71628cd332bc3 215 SUPERFAMILY SSF47413 2 69 1.31E-15 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_2037 af2469daa4375c9ed6d71628cd332bc3 215 Gene3D G3DSA:2.10.109.10 87 214 5.3E-42 T 10-10-2018 VF_2037 af2469daa4375c9ed6d71628cd332bc3 215 Gene3D G3DSA:1.10.260.40 1 66 2.3E-20 T 10-10-2018 VF_1132 d175e5a9bdba1c023a7c5d2313bae1ae 460 Gene3D G3DSA:3.20.20.80 14 386 5.7E-74 T 10-10-2018 VF_1132 d175e5a9bdba1c023a7c5d2313bae1ae 460 SMART SM00642 17 378 3.1E-31 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_1132 d175e5a9bdba1c023a7c5d2313bae1ae 460 SUPERFAMILY SSF51445 14 377 3.08E-62 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_1132 d175e5a9bdba1c023a7c5d2313bae1ae 460 Pfam PF00128 Alpha amylase, catalytic domain 30 315 1.2E-18 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_1132 d175e5a9bdba1c023a7c5d2313bae1ae 460 PRINTS PR00110 Alpha-amylase signature 303 315 7.8E-15 T 10-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VF_1132 d175e5a9bdba1c023a7c5d2313bae1ae 460 PRINTS PR00110 Alpha-amylase signature 95 106 7.8E-15 T 10-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VF_1132 d175e5a9bdba1c023a7c5d2313bae1ae 460 PRINTS PR00110 Alpha-amylase signature 237 255 7.8E-15 T 10-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VF_1132 d175e5a9bdba1c023a7c5d2313bae1ae 460 PRINTS PR00110 Alpha-amylase signature 208 219 7.8E-15 T 10-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VF_1132 d175e5a9bdba1c023a7c5d2313bae1ae 460 PRINTS PR00110 Alpha-amylase signature 62 79 7.8E-15 T 10-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VF_A0818 7f8711a11a40a6fbd33a428f4346b5ef 163 SUPERFAMILY SSF110087 14 156 8.89E-48 T 10-10-2018 IPR036182 Copper chaperone PCuAC superfamily VF_A0818 7f8711a11a40a6fbd33a428f4346b5ef 163 Gene3D G3DSA:2.60.40.1890 44 159 3.2E-37 T 10-10-2018 IPR036182 Copper chaperone PCuAC superfamily VF_A0818 7f8711a11a40a6fbd33a428f4346b5ef 163 Pfam PF04314 Copper chaperone PCu(A)C 40 145 5.0E-36 T 10-10-2018 IPR007410 Copper chaperone PCuAC VF_A0405 71e0742141906c22423818febdea60db 357 SUPERFAMILY SSF82861 95 179 3.01E-12 T 10-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 VF_A0405 71e0742141906c22423818febdea60db 357 SUPERFAMILY SSF50182 180 247 4.58E-18 T 10-10-2018 IPR010920 LSM domain superfamily VF_A0405 71e0742141906c22423818febdea60db 357 Gene3D G3DSA:3.30.70.100 249 346 1.2E-16 T 10-10-2018 VF_A0405 71e0742141906c22423818febdea60db 357 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 212 246 - T 10-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 VF_A0405 71e0742141906c22423818febdea60db 357 SUPERFAMILY SSF82689 252 351 1.44E-19 T 10-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 VF_A0405 71e0742141906c22423818febdea60db 357 Pfam PF00924 Mechanosensitive ion channel 138 342 8.3E-56 T 10-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VF_A0405 71e0742141906c22423818febdea60db 357 Gene3D G3DSA:2.30.30.60 196 246 9.1E-10 T 10-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VF_1318 612510c4f53448422751357338f37fd1 344 PIRSF PIRSF019574 1 344 3.6E-108 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1318 612510c4f53448422751357338f37fd1 344 Gene3D G3DSA:3.40.190.10 32 311 3.3E-107 T 10-10-2018 VF_1318 612510c4f53448422751357338f37fd1 344 SUPERFAMILY SSF53850 28 340 7.91E-83 T 10-10-2018 VF_1318 612510c4f53448422751357338f37fd1 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 123 139 9.9E-69 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1318 612510c4f53448422751357338f37fd1 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 248 267 9.9E-69 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1318 612510c4f53448422751357338f37fd1 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 49 70 9.9E-69 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1318 612510c4f53448422751357338f37fd1 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 149 163 9.9E-69 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1318 612510c4f53448422751357338f37fd1 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 92 105 9.9E-69 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1318 612510c4f53448422751357338f37fd1 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 167 186 9.9E-69 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1318 612510c4f53448422751357338f37fd1 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 33 49 9.9E-69 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1318 612510c4f53448422751357338f37fd1 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 204 223 9.9E-69 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1318 612510c4f53448422751357338f37fd1 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 76 90 9.9E-69 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1318 612510c4f53448422751357338f37fd1 344 Gene3D G3DSA:3.40.190.10 132 316 3.3E-107 T 10-10-2018 VF_1318 612510c4f53448422751357338f37fd1 344 Pfam PF13416 Bacterial extracellular solute-binding protein 43 303 4.0E-35 T 10-10-2018 IPR006059 Bacterial extracellular solute-binding protein VF_0126 f4cb71a958299ac31f33949169b97bd4 224 SUPERFAMILY SSF102712 116 192 5.23E-5 T 10-10-2018 VF_0126 f4cb71a958299ac31f33949169b97bd4 224 Gene3D G3DSA:3.40.140.10 100 224 1.1E-42 T 10-10-2018 VF_0126 f4cb71a958299ac31f33949169b97bd4 224 SUPERFAMILY SSF47781 16 89 2.36E-10 T 10-10-2018 IPR010994 RuvA domain 2-like VF_0126 f4cb71a958299ac31f33949169b97bd4 224 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 10-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site VF_0126 f4cb71a958299ac31f33949169b97bd4 224 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 224 4.3E-80 T 10-10-2018 IPR001405 Uncharacterised protein family UPF0758 VF_0126 f4cb71a958299ac31f33949169b97bd4 224 Pfam PF04002 RadC-like JAB domain 103 222 1.3E-43 T 10-10-2018 IPR025657 RadC-like JAB domain VF_0225 6b739b643ddc0955736db53589ad5dc7 337 SUPERFAMILY SSF50998 35 329 6.51E-42 T 10-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily VF_0225 6b739b643ddc0955736db53589ad5dc7 337 Pfam PF00400 WD domain, G-beta repeat 253 286 0.026 T 10-10-2018 IPR001680 WD40 repeat GO:0005515 VF_0225 6b739b643ddc0955736db53589ad5dc7 337 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 188 202 - T 10-10-2018 IPR019775 WD40 repeat, conserved site VF_0225 6b739b643ddc0955736db53589ad5dc7 337 Gene3D G3DSA:2.130.10.10 30 254 6.3E-27 T 10-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VF_0225 6b739b643ddc0955736db53589ad5dc7 337 Pfam PF13360 PQQ-like domain 124 248 2.7E-4 T 10-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat VF_0225 6b739b643ddc0955736db53589ad5dc7 337 Gene3D G3DSA:2.130.10.10 255 337 2.4E-9 T 10-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VF_0225 6b739b643ddc0955736db53589ad5dc7 337 SMART SM00320 163 201 0.0013 T 10-10-2018 IPR001680 WD40 repeat GO:0005515 VF_0225 6b739b643ddc0955736db53589ad5dc7 337 SMART SM00320 245 286 0.011 T 10-10-2018 IPR001680 WD40 repeat GO:0005515 VF_0225 6b739b643ddc0955736db53589ad5dc7 337 SMART SM00320 297 335 200.0 T 10-10-2018 IPR001680 WD40 repeat GO:0005515 VF_0225 6b739b643ddc0955736db53589ad5dc7 337 SMART SM00320 204 242 0.62 T 10-10-2018 IPR001680 WD40 repeat GO:0005515 VF_0225 6b739b643ddc0955736db53589ad5dc7 337 SMART SM00320 76 118 180.0 T 10-10-2018 IPR001680 WD40 repeat GO:0005515 VF_0515 077411dcd92fce8ac12d65c00a5288fa 412 SUPERFAMILY SSF52540 153 394 2.52E-19 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0515 077411dcd92fce8ac12d65c00a5288fa 412 Gene3D G3DSA:3.40.50.2300 16 144 3.5E-7 T 10-10-2018 VF_0515 077411dcd92fce8ac12d65c00a5288fa 412 Gene3D G3DSA:3.40.50.300 151 392 2.4E-21 T 10-10-2018 VF_A1167 2fc84c4803a3d9164befd349f7c13563 221 Gene3D G3DSA:3.10.620.30 17 208 6.9E-74 T 10-10-2018 VF_A1167 2fc84c4803a3d9164befd349f7c13563 221 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 56 163 4.1E-13 T 10-10-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted VF_0869 b8eead0748a983a35171951a563aba7d 97 Hamap MF_00827 UPF0386 protein YjhX [yjhX]. 13 97 27.422 T 10-10-2018 IPR018654 Putative toxin of bacterial toxin-antitoxin pair VF_0869 b8eead0748a983a35171951a563aba7d 97 Pfam PF09857 Putative toxin of bacterial toxin-antitoxin pair 13 97 1.1E-36 T 10-10-2018 IPR018654 Putative toxin of bacterial toxin-antitoxin pair VF_A0920 ad5bba1d3567e62bf92ca3aef14f7e03 326 SUPERFAMILY SSF51679 100 325 2.88E-70 T 10-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 VF_A0920 ad5bba1d3567e62bf92ca3aef14f7e03 326 Gene3D G3DSA:3.20.20.30 1 325 3.2E-100 T 10-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 VF_A0920 ad5bba1d3567e62bf92ca3aef14f7e03 326 Pfam PF00296 Luciferase-like monooxygenase 1 265 4.1E-30 T 10-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 VF_A0920 ad5bba1d3567e62bf92ca3aef14f7e03 326 PRINTS PR00089 Bacterial luciferase signature 216 233 1.5E-23 T 10-10-2018 IPR002103 Bacterial luciferase/NFP MetaCyc: PWY-7723 VF_A0920 ad5bba1d3567e62bf92ca3aef14f7e03 326 PRINTS PR00089 Bacterial luciferase signature 199 214 1.5E-23 T 10-10-2018 IPR002103 Bacterial luciferase/NFP MetaCyc: PWY-7723 VF_A0920 ad5bba1d3567e62bf92ca3aef14f7e03 326 PRINTS PR00089 Bacterial luciferase signature 183 198 1.5E-23 T 10-10-2018 IPR002103 Bacterial luciferase/NFP MetaCyc: PWY-7723 VF_A0920 ad5bba1d3567e62bf92ca3aef14f7e03 326 PRINTS PR00089 Bacterial luciferase signature 234 252 1.5E-23 T 10-10-2018 IPR002103 Bacterial luciferase/NFP MetaCyc: PWY-7723 VF_A0920 ad5bba1d3567e62bf92ca3aef14f7e03 326 PRINTS PR00089 Bacterial luciferase signature 169 180 1.5E-23 T 10-10-2018 IPR002103 Bacterial luciferase/NFP MetaCyc: PWY-7723 VF_2356 c19b2c48a20a5409b46ff0212bfe1585 615 Gene3D G3DSA:3.40.30.10 484 611 1.7E-31 T 10-10-2018 VF_2356 c19b2c48a20a5409b46ff0212bfe1585 615 SUPERFAMILY SSF74863 38 152 8.11E-39 T 10-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily VF_2356 c19b2c48a20a5409b46ff0212bfe1585 615 Pfam PF13899 Thioredoxin-like 500 563 1.3E-14 T 10-10-2018 VF_2356 c19b2c48a20a5409b46ff0212bfe1585 615 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 7 611 37.483 T 10-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 VF_2356 c19b2c48a20a5409b46ff0212bfe1585 615 Pfam PF11412 Disulphide bond corrector protein DsbC 41 148 7.7E-28 T 10-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain VF_2356 c19b2c48a20a5409b46ff0212bfe1585 615 ProSitePatterns PS00194 Thioredoxin family active site. 519 537 - T 10-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VF_2356 c19b2c48a20a5409b46ff0212bfe1585 615 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 217 418 8.5E-16 T 10-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 VF_2356 c19b2c48a20a5409b46ff0212bfe1585 615 SUPERFAMILY SSF52833 500 607 9.83E-22 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_2356 c19b2c48a20a5409b46ff0212bfe1585 615 Gene3D G3DSA:2.60.40.1250 32 167 2.0E-38 T 10-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily VF_0006 5f44fd8307aadbfdf661b55c887acefe 245 SUPERFAMILY SSF52540 1 238 9.45E-74 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0006 5f44fd8307aadbfdf661b55c887acefe 245 SMART SM00382 26 216 7.6E-16 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0006 5f44fd8307aadbfdf661b55c887acefe 245 Gene3D G3DSA:3.40.50.300 1 243 8.0E-75 T 10-10-2018 VF_0006 5f44fd8307aadbfdf661b55c887acefe 245 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0006 5f44fd8307aadbfdf661b55c887acefe 245 PIRSF PIRSF039085 1 244 4.3E-102 T 10-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VF_0006 5f44fd8307aadbfdf661b55c887acefe 245 Pfam PF00005 ABC transporter 18 168 2.9E-29 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 SUPERFAMILY SSF49373 160 213 4.71E-11 T 10-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 Gene3D G3DSA:2.60.40.1080 491 573 2.2E-6 T 10-10-2018 VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 Gene3D G3DSA:2.60.40.1080 34 128 6.4E-11 T 10-10-2018 VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 Pfam PF02368 Bacterial Ig-like domain (group 2) 241 306 1.9E-9 T 10-10-2018 IPR003343 Bacterial Ig-like, group 2 VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 Pfam PF02368 Bacterial Ig-like domain (group 2) 133 208 2.8E-10 T 10-10-2018 IPR003343 Bacterial Ig-like, group 2 VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 Pfam PF02368 Bacterial Ig-like domain (group 2) 408 487 6.1E-6 T 10-10-2018 IPR003343 Bacterial Ig-like, group 2 VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 SUPERFAMILY SSF49373 262 309 1.73E-9 T 10-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 SMART SM00635 227 308 8.8E-5 T 10-10-2018 IPR003343 Bacterial Ig-like, group 2 VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 SMART SM00635 405 487 0.28 T 10-10-2018 IPR003343 Bacterial Ig-like, group 2 VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 SMART SM00635 131 211 3.8E-8 T 10-10-2018 IPR003343 Bacterial Ig-like, group 2 VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 SMART SM00635 46 124 0.52 T 10-10-2018 IPR003343 Bacterial Ig-like, group 2 VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 SMART SM00635 491 573 7.5 T 10-10-2018 IPR003343 Bacterial Ig-like, group 2 VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 Gene3D G3DSA:2.60.40.1080 217 313 3.4E-15 T 10-10-2018 VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 Gene3D G3DSA:2.60.40.1080 314 404 4.7E-6 T 10-10-2018 VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 Gene3D G3DSA:2.60.40.1080 130 216 1.8E-15 T 10-10-2018 VF_A0894 0e23d3a57633f7076e33c3d01cc4560e 598 Gene3D G3DSA:2.60.40.1080 405 490 2.4E-11 T 10-10-2018 VF_1163 c2e5b40f45332b78104e0605599421f4 405 Pfam PF12704 MacB-like periplasmic core domain 20 225 1.4E-18 T 10-10-2018 IPR025857 MacB-like periplasmic core domain VF_1163 c2e5b40f45332b78104e0605599421f4 405 Pfam PF02687 FtsX-like permease family 306 394 1.0E-9 T 10-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VF_0317 1d59f5d1fb94c11fe79587778f0b197c 150 Pfam PF13673 Acetyltransferase (GNAT) domain 42 149 2.9E-15 T 10-10-2018 IPR000182 GNAT domain VF_0317 1d59f5d1fb94c11fe79587778f0b197c 150 SUPERFAMILY SSF55729 1 149 4.77E-35 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_0317 1d59f5d1fb94c11fe79587778f0b197c 150 Gene3D G3DSA:3.40.630.30 1 148 1.2E-40 T 10-10-2018 VF_0928 9bde828069c8413455e94757e061b932 138 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 126 1.1E-23 T 10-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VF_0928 9bde828069c8413455e94757e061b932 138 Gene3D G3DSA:3.10.180.10 3 135 1.4E-50 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_0928 9bde828069c8413455e94757e061b932 138 ProSitePatterns PS00934 Glyoxalase I signature 1. 8 29 - T 10-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 VF_0928 9bde828069c8413455e94757e061b932 138 ProSitePatterns PS00935 Glyoxalase I signature 2. 72 84 - T 10-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 VF_0928 9bde828069c8413455e94757e061b932 138 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 5 136 1.4E-67 T 10-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 VF_0928 9bde828069c8413455e94757e061b932 138 SUPERFAMILY SSF54593 3 130 4.43E-36 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_2109 87ba4d3f1b0816ec766279740a8416f7 259 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 37.951 T 10-10-2018 IPR005583 Peroxide stress protein YaaA VF_2109 87ba4d3f1b0816ec766279740a8416f7 259 Pfam PF03883 Peroxide stress protein YaaA 1 243 1.6E-92 T 10-10-2018 IPR005583 Peroxide stress protein YaaA VF_0110 c261a34b46241674385b771f88f41d6d 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 1.6E-117 T 10-10-2018 IPR005229 Conserved hypothetical protein CHP00255 VF_0110 c261a34b46241674385b771f88f41d6d 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 1.1E-34 T 10-10-2018 IPR013551 Domain of unknown function DUF1732 VF_0110 c261a34b46241674385b771f88f41d6d 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 4.6E-43 T 10-10-2018 IPR013527 YicC-like, N-terminal VF_0187 7e77fb1230a0f6b5ee9dc3a957990e77 309 SUPERFAMILY SSF53448 5 265 4.26E-26 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0187 7e77fb1230a0f6b5ee9dc3a957990e77 309 Pfam PF00535 Glycosyl transferase family 2 9 161 3.3E-17 T 10-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VF_0187 7e77fb1230a0f6b5ee9dc3a957990e77 309 Gene3D G3DSA:3.90.550.10 6 194 1.0E-21 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_1425 bba46416816bd45a199730c6ae72a702 337 Gene3D G3DSA:3.40.50.300 1 212 6.5E-51 T 10-10-2018 VF_1425 bba46416816bd45a199730c6ae72a702 337 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 38 170 9.5E-62 T 10-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 VF_1425 bba46416816bd45a199730c6ae72a702 337 SUPERFAMILY SSF52540 5 309 1.22E-40 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1425 bba46416816bd45a199730c6ae72a702 337 Gene3D G3DSA:1.10.8.300 218 334 1.2E-35 T 10-10-2018 VF_1425 bba46416816bd45a199730c6ae72a702 337 PIRSF PIRSF002849 1 337 1.7E-127 T 10-10-2018 VF_2052 46ee06128f366ca5686d144dcc773d4e 208 Gene3D G3DSA:1.10.357.20 30 206 1.2E-54 T 10-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain VF_2052 46ee06128f366ca5686d144dcc773d4e 208 SUPERFAMILY SSF161093 39 205 3.01E-49 T 10-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 VF_2052 46ee06128f366ca5686d144dcc773d4e 208 Pfam PF01769 Divalent cation transporter 79 198 4.4E-29 T 10-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 VF_A1065 1e1f6cce0e47358acb0b9e49cb98a495 322 Pfam PF11383 Protein of unknown function (DUF3187) 8 321 1.5E-105 T 10-10-2018 IPR021523 Protein of unknown function DUF3187 VF_A0142 7b1852060597f492c7293b7205972de6 765 SUPERFAMILY SSF51998 8 764 6.1E-280 T 10-10-2018 VF_A0142 7b1852060597f492c7293b7205972de6 765 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 11 765 0.0 T 10-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 VF_A0142 7b1852060597f492c7293b7205972de6 765 Pfam PF01228 Glycine radical 630 746 2.0E-42 T 10-10-2018 IPR001150 Glycine radical domain GO:0003824 VF_A0142 7b1852060597f492c7293b7205972de6 765 ProSitePatterns PS00850 Glycine radical domain signature. 735 743 - T 10-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site VF_A0142 7b1852060597f492c7293b7205972de6 765 PIRSF PIRSF000379 8 765 0.0 T 10-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 VF_A0142 7b1852060597f492c7293b7205972de6 765 Pfam PF02901 Pyruvate formate lyase-like 26 614 5.7E-195 T 10-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 VF_A0142 7b1852060597f492c7293b7205972de6 765 Gene3D G3DSA:3.20.70.20 6 765 0.0 T 10-10-2018 VF_1165 23f4047e5300fcc707e2b812d8ef97db 241 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1165 23f4047e5300fcc707e2b812d8ef97db 241 Pfam PF00005 ABC transporter 37 185 2.0E-32 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1165 23f4047e5300fcc707e2b812d8ef97db 241 Gene3D G3DSA:3.40.50.300 15 240 3.1E-70 T 10-10-2018 VF_1165 23f4047e5300fcc707e2b812d8ef97db 241 SUPERFAMILY SSF52540 17 237 3.19E-73 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1165 23f4047e5300fcc707e2b812d8ef97db 241 SMART SM00382 46 233 9.0E-15 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0660 fbe1915bb55cd371ff60915e4254539a 447 Pfam PF00209 Sodium:neurotransmitter symporter family 149 446 1.1E-22 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_0660 fbe1915bb55cd371ff60915e4254539a 447 Pfam PF00209 Sodium:neurotransmitter symporter family 5 126 2.3E-21 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_0660 fbe1915bb55cd371ff60915e4254539a 447 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 13 34 5.7E-10 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_0660 fbe1915bb55cd371ff60915e4254539a 447 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 42 61 5.7E-10 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_0660 fbe1915bb55cd371ff60915e4254539a 447 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 308 327 5.7E-10 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_0660 fbe1915bb55cd371ff60915e4254539a 447 SUPERFAMILY SSF161070 5 447 3.01E-113 T 10-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 VF_A0170 298f102313d25f7ee46dc701abded877 541 SUPERFAMILY SSF58104 236 541 1.03E-69 T 10-10-2018 VF_A0170 298f102313d25f7ee46dc701abded877 541 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 169 5.8E-11 T 10-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VF_A0170 298f102313d25f7ee46dc701abded877 541 SMART SM00304 210 264 0.0022 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0170 298f102313d25f7ee46dc701abded877 541 SMART SM00283 279 540 8.2E-63 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0170 298f102313d25f7ee46dc701abded877 541 Gene3D G3DSA:1.10.287.950 209 541 8.6E-74 T 10-10-2018 VF_A0170 298f102313d25f7ee46dc701abded877 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 505 2.2E-39 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0036 b4841cde62f2188d4825e13025b075ac 211 Gene3D G3DSA:3.30.40.60 7 128 5.8E-6 T 10-10-2018 VF_1484 acb1f5f9426c4cb12901a531f2624934 224 Pfam PF04172 LrgB-like family 6 218 2.2E-74 T 10-10-2018 IPR007300 CidB/LrgB family VF_1484 acb1f5f9426c4cb12901a531f2624934 224 TIGRFAM TIGR00659 TIGR00659: TIGR00659 family protein 2 219 8.9E-79 T 10-10-2018 IPR005261 Conserved hypothetical protein CHP00659 VF_2261 e7a03069ebcfd87ec8e051ab9bc9a7d8 631 SUPERFAMILY SSF103190 38 206 1.61E-27 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_2261 e7a03069ebcfd87ec8e051ab9bc9a7d8 631 SMART SM00267 459 624 5.6E-40 T 10-10-2018 IPR000160 GGDEF domain VF_2261 e7a03069ebcfd87ec8e051ab9bc9a7d8 631 Gene3D G3DSA:3.30.450.20 338 466 2.8E-21 T 10-10-2018 VF_2261 e7a03069ebcfd87ec8e051ab9bc9a7d8 631 Gene3D G3DSA:3.30.70.270 467 627 2.3E-41 T 10-10-2018 VF_2261 e7a03069ebcfd87ec8e051ab9bc9a7d8 631 SMART SM00091 344 412 4.0E-4 T 10-10-2018 IPR000014 PAS domain VF_2261 e7a03069ebcfd87ec8e051ab9bc9a7d8 631 Pfam PF13426 PAS domain 356 458 2.9E-11 T 10-10-2018 IPR000014 PAS domain VF_2261 e7a03069ebcfd87ec8e051ab9bc9a7d8 631 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 349 466 6.8E-15 T 10-10-2018 IPR000014 PAS domain VF_2261 e7a03069ebcfd87ec8e051ab9bc9a7d8 631 Gene3D G3DSA:3.30.450.20 75 207 3.5E-8 T 10-10-2018 VF_2261 e7a03069ebcfd87ec8e051ab9bc9a7d8 631 SUPERFAMILY SSF55785 356 467 2.58E-16 T 10-10-2018 IPR035965 PAS domain superfamily VF_2261 e7a03069ebcfd87ec8e051ab9bc9a7d8 631 Gene3D G3DSA:3.30.450.20 208 302 5.2E-13 T 10-10-2018 VF_2261 e7a03069ebcfd87ec8e051ab9bc9a7d8 631 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 469 622 3.6E-35 T 10-10-2018 IPR000160 GGDEF domain VF_2261 e7a03069ebcfd87ec8e051ab9bc9a7d8 631 Pfam PF00990 Diguanylate cyclase, GGDEF domain 472 620 6.0E-31 T 10-10-2018 IPR000160 GGDEF domain VF_2261 e7a03069ebcfd87ec8e051ab9bc9a7d8 631 SUPERFAMILY SSF55073 475 624 1.41E-37 T 10-10-2018 IPR029787 Nucleotide cyclase VF_2261 e7a03069ebcfd87ec8e051ab9bc9a7d8 631 SUPERFAMILY SSF103190 209 301 5.1E-20 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_0719 e4c3523df4424c159743411c16134c62 257 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 33 257 6.0E-29 T 10-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 VF_0719 e4c3523df4424c159743411c16134c62 257 SUPERFAMILY SSF111364 25 257 2.75E-31 T 10-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 VF_2145 912ae057208566defa8dd9740f2bb13a 291 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 6 283 9.8E-41 T 10-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 VF_2145 912ae057208566defa8dd9740f2bb13a 291 Gene3D G3DSA:3.30.420.40 115 261 1.2E-68 T 10-10-2018 VF_2145 912ae057208566defa8dd9740f2bb13a 291 SUPERFAMILY SSF53067 114 283 3.63E-42 T 10-10-2018 VF_2145 912ae057208566defa8dd9740f2bb13a 291 Gene3D G3DSA:3.30.420.40 5 114 1.2E-68 T 10-10-2018 VF_2145 912ae057208566defa8dd9740f2bb13a 291 SUPERFAMILY SSF53067 1 112 1.7E-24 T 10-10-2018 VF_0031 40a13b6855b8ade61f9c3d77b247b6e2 459 Pfam PF00654 Voltage gated chloride channel 60 408 5.6E-63 T 10-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VF_0031 40a13b6855b8ade61f9c3d77b247b6e2 459 Gene3D G3DSA:1.10.3080.10 5 426 1.1E-52 T 10-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 VF_0031 40a13b6855b8ade61f9c3d77b247b6e2 459 SUPERFAMILY SSF81340 4 421 4.97E-80 T 10-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 VF_0031 40a13b6855b8ade61f9c3d77b247b6e2 459 PRINTS PR00762 Chloride channel signature 331 351 2.4E-10 T 10-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VF_0031 40a13b6855b8ade61f9c3d77b247b6e2 459 PRINTS PR00762 Chloride channel signature 152 171 2.4E-10 T 10-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VF_0031 40a13b6855b8ade61f9c3d77b247b6e2 459 PRINTS PR00762 Chloride channel signature 359 375 2.4E-10 T 10-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VF_A0283 8cf47ceb2c9de915b5445792d8aca854 395 Pfam PF00155 Aminotransferase class I and II 27 389 6.3E-67 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VF_A0283 8cf47ceb2c9de915b5445792d8aca854 395 PRINTS PR00799 Aspartate aminotransferase signature 338 356 2.6E-29 T 10-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VF_A0283 8cf47ceb2c9de915b5445792d8aca854 395 PRINTS PR00799 Aspartate aminotransferase signature 270 295 2.6E-29 T 10-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VF_A0283 8cf47ceb2c9de915b5445792d8aca854 395 PRINTS PR00799 Aspartate aminotransferase signature 172 191 2.6E-29 T 10-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VF_A0283 8cf47ceb2c9de915b5445792d8aca854 395 PRINTS PR00799 Aspartate aminotransferase signature 203 215 2.6E-29 T 10-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VF_A0283 8cf47ceb2c9de915b5445792d8aca854 395 Gene3D G3DSA:3.90.1150.10 11 389 3.1E-135 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_A0283 8cf47ceb2c9de915b5445792d8aca854 395 SUPERFAMILY SSF53383 2 388 4.03E-99 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_A0283 8cf47ceb2c9de915b5445792d8aca854 395 Gene3D G3DSA:3.40.640.10 45 312 3.1E-135 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_0544 9c07047e97049746315445a96566e738 199 Gene3D G3DSA:1.10.530.10 36 194 1.1E-12 T 10-10-2018 VF_0544 9c07047e97049746315445a96566e738 199 SUPERFAMILY SSF53955 17 160 5.29E-21 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_1580 718f8e3dac430909a2d4021172b45e7f 227 PIRSF PIRSF006293 1 224 1.0E-80 T 10-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 VF_1580 718f8e3dac430909a2d4021172b45e7f 227 SUPERFAMILY SSF52402 2 212 2.87E-64 T 10-10-2018 VF_1580 718f8e3dac430909a2d4021172b45e7f 227 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 218 48.758 T 10-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 VF_1580 718f8e3dac430909a2d4021172b45e7f 227 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 205 3.9E-83 T 10-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 VF_1580 718f8e3dac430909a2d4021172b45e7f 227 Gene3D G3DSA:3.40.50.620 2 227 4.4E-77 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_1580 718f8e3dac430909a2d4021172b45e7f 227 Pfam PF06508 Queuosine biosynthesis protein QueC 3 212 4.9E-83 T 10-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 VF_1825 ead775e37d67ea1f10f61d9f05e61942 153 Pfam PF10975 Protein of unknown function (DUF2802) 69 134 2.6E-23 T 10-10-2018 IPR021244 Protein of unknown function DUF2802 VF_0268 99b51badb8008d7bad8f8ced4139926e 534 SUPERFAMILY SSF161098 16 263 3.18E-36 T 10-10-2018 IPR035906 MetI-like superfamily VF_0268 99b51badb8008d7bad8f8ced4139926e 534 SUPERFAMILY SSF161098 284 526 5.34E-31 T 10-10-2018 IPR035906 MetI-like superfamily VF_0268 99b51badb8008d7bad8f8ced4139926e 534 Gene3D G3DSA:1.10.3720.10 9 267 2.2E-37 T 10-10-2018 IPR035906 MetI-like superfamily VF_0268 99b51badb8008d7bad8f8ced4139926e 534 Gene3D G3DSA:1.10.3720.10 290 533 1.6E-26 T 10-10-2018 IPR035906 MetI-like superfamily VF_0268 99b51badb8008d7bad8f8ced4139926e 534 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 14 523 1.8E-156 T 10-10-2018 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 VF_0619 526ce4344d6e02ba2704ce7b6b626181 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 2.6E-56 T 10-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 VF_0619 526ce4344d6e02ba2704ce7b6b626181 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 4.1E-25 T 10-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 VF_0619 526ce4344d6e02ba2704ce7b6b626181 107 SUPERFAMILY SSF89360 1 96 2.09E-32 T 10-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VF_0619 526ce4344d6e02ba2704ce7b6b626181 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 2.5E-37 T 10-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 VF_0619 526ce4344d6e02ba2704ce7b6b626181 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 10-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 VF_0619 526ce4344d6e02ba2704ce7b6b626181 107 Gene3D G3DSA:2.60.300.12 2 107 7.5E-38 T 10-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VF_1001 3e2944423d23e4351bfe616b2fbd444a 583 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 3 583 1.8E-185 T 10-10-2018 IPR010272 Type VI secretion system, TssF-like VF_1001 3e2944423d23e4351bfe616b2fbd444a 583 PIRSF PIRSF028304 1 583 2.3E-197 T 10-10-2018 IPR010272 Type VI secretion system, TssF-like VF_1001 3e2944423d23e4351bfe616b2fbd444a 583 Pfam PF05947 Type VI secretion system, TssF 5 582 2.0E-164 T 10-10-2018 IPR010272 Type VI secretion system, TssF-like VF_0243 05e41dd6f2f21788f1a907fa9196b049 136 Gene3D G3DSA:3.90.1170.10 1 136 2.7E-53 T 10-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 VF_0243 05e41dd6f2f21788f1a907fa9196b049 136 PRINTS PR00060 Ribosomal protein L16 signature 87 116 2.6E-40 T 10-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0243 05e41dd6f2f21788f1a907fa9196b049 136 PRINTS PR00060 Ribosomal protein L16 signature 57 86 2.6E-40 T 10-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0243 05e41dd6f2f21788f1a907fa9196b049 136 PRINTS PR00060 Ribosomal protein L16 signature 23 35 2.6E-40 T 10-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0243 05e41dd6f2f21788f1a907fa9196b049 136 PRINTS PR00060 Ribosomal protein L16 signature 41 52 2.6E-40 T 10-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0243 05e41dd6f2f21788f1a907fa9196b049 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 3.4E-57 T 10-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0243 05e41dd6f2f21788f1a907fa9196b049 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 1.4E-46 T 10-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 VF_0243 05e41dd6f2f21788f1a907fa9196b049 136 SUPERFAMILY SSF54686 3 133 1.1E-52 T 10-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 VF_0243 05e41dd6f2f21788f1a907fa9196b049 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 133 37.398 T 10-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0243 05e41dd6f2f21788f1a907fa9196b049 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 58 69 - T 10-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_1388 06ba7bfe2f04320e6ea2b589506cf44f 260 SUPERFAMILY SSF51735 8 250 7.62E-26 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1388 06ba7bfe2f04320e6ea2b589506cf44f 260 Pfam PF13460 NAD(P)H-binding 10 150 2.9E-7 T 10-10-2018 IPR016040 NAD(P)-binding domain VF_1388 06ba7bfe2f04320e6ea2b589506cf44f 260 Gene3D G3DSA:3.40.50.720 1 257 4.6E-53 T 10-10-2018 VF_1999 3d94dffc6f6045c557509e1d159d18a8 118 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 7 112 33.072 T 10-10-2018 IPR026592 Outer membrane protein assembly factor BamE VF_1999 3d94dffc6f6045c557509e1d159d18a8 118 Gene3D G3DSA:3.30.1450.10 34 117 3.2E-27 T 10-10-2018 IPR037873 BamE-like VF_1999 3d94dffc6f6045c557509e1d159d18a8 118 Pfam PF04355 SmpA / OmlA family 35 104 1.9E-28 T 10-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 VF_2071 3f81eefaf44e5a85a5ff11361ee2ac0a 351 Gene3D G3DSA:3.30.2350.20 18 337 8.4E-103 T 10-10-2018 VF_2071 3f81eefaf44e5a85a5ff11361ee2ac0a 351 SUPERFAMILY SSF55120 6 339 6.62E-95 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_2071 3f81eefaf44e5a85a5ff11361ee2ac0a 351 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 78 91 - T 10-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 VF_2071 3f81eefaf44e5a85a5ff11361ee2ac0a 351 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 6 342 27.714 T 10-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_2071 3f81eefaf44e5a85a5ff11361ee2ac0a 351 Gene3D G3DSA:3.30.2340.10 170 302 8.4E-103 T 10-10-2018 VF_2071 3f81eefaf44e5a85a5ff11361ee2ac0a 351 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 12 171 2.8E-43 T 10-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_2071 3f81eefaf44e5a85a5ff11361ee2ac0a 351 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 194 337 3.1E-21 T 10-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1531 9d739640b447930173667ff7984602c6 313 Pfam PF10414 Sirohaem synthase dimerisation region 155 206 9.5E-13 T 10-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VF_1531 9d739640b447930173667ff7984602c6 313 Gene3D G3DSA:1.10.8.210 150 208 1.4E-8 T 10-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VF_1531 9d739640b447930173667ff7984602c6 313 Gene3D G3DSA:3.40.50.720 1 113 8.7E-31 T 10-10-2018 VF_1531 9d739640b447930173667ff7984602c6 313 SUPERFAMILY SSF53790 224 287 1.6E-6 T 10-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 VF_1531 9d739640b447930173667ff7984602c6 313 Gene3D G3DSA:3.40.1010.10 222 295 1.9E-6 T 10-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 VF_1531 9d739640b447930173667ff7984602c6 313 Gene3D G3DSA:3.30.160.110 114 148 1.6E-13 T 10-10-2018 VF_1531 9d739640b447930173667ff7984602c6 313 Pfam PF14824 Sirohaem biosynthesis protein central 120 146 9.5E-8 T 10-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VF_1531 9d739640b447930173667ff7984602c6 313 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 201 1.2E-60 T 10-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VF_1531 9d739640b447930173667ff7984602c6 313 SUPERFAMILY SSF51735 1 113 8.46E-24 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1531 9d739640b447930173667ff7984602c6 313 Pfam PF13241 Putative NAD(P)-binding 6 116 1.2E-25 T 10-10-2018 VF_1531 9d739640b447930173667ff7984602c6 313 SUPERFAMILY SSF75615 109 220 1.96E-23 T 10-10-2018 VF_1335 4b3f1953c0be6d949af4853cf3b93c1c 210 Gene3D G3DSA:1.10.3210.50 2 210 3.5E-66 T 10-10-2018 VF_1335 4b3f1953c0be6d949af4853cf3b93c1c 210 Pfam PF01966 HD domain 27 129 4.4E-9 T 10-10-2018 IPR006674 HD domain VF_1335 4b3f1953c0be6d949af4853cf3b93c1c 210 SMART SM00471 22 139 1.9E-6 T 10-10-2018 IPR003607 HD/PDEase domain VF_1335 4b3f1953c0be6d949af4853cf3b93c1c 210 SUPERFAMILY SSF109604 7 210 6.85E-60 T 10-10-2018 VF_A0739 49203f566d9ca7487a5c203662ae334b 164 Pfam PF00583 Acetyltransferase (GNAT) family 36 136 1.7E-18 T 10-10-2018 IPR000182 GNAT domain VF_A0739 49203f566d9ca7487a5c203662ae334b 164 Gene3D G3DSA:3.40.630.30 1 163 1.1E-40 T 10-10-2018 VF_A0739 49203f566d9ca7487a5c203662ae334b 164 SUPERFAMILY SSF55729 3 161 2.87E-38 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A0968 f245d238a626a8642d4e497448b32d31 239 Gene3D G3DSA:3.40.50.1580 1 239 4.8E-72 T 10-10-2018 VF_A0968 f245d238a626a8642d4e497448b32d31 239 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 46.293 T 10-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 VF_A0968 f245d238a626a8642d4e497448b32d31 239 Pfam PF01048 Phosphorylase superfamily 16 217 8.0E-35 T 10-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VF_A0968 f245d238a626a8642d4e497448b32d31 239 SUPERFAMILY SSF53167 3 234 2.09E-84 T 10-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VF_A0968 f245d238a626a8642d4e497448b32d31 239 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 235 1.0E-99 T 10-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 VF_A0968 f245d238a626a8642d4e497448b32d31 239 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 10-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_0679 368839080b93f1b839daa4610cda6137 254 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 249 4.9E-17 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_0679 368839080b93f1b839daa4610cda6137 254 SUPERFAMILY SSF161098 55 241 1.23E-18 T 10-10-2018 IPR035906 MetI-like superfamily VF_0679 368839080b93f1b839daa4610cda6137 254 Gene3D G3DSA:1.10.3720.10 51 252 1.0E-14 T 10-10-2018 IPR035906 MetI-like superfamily VF_1148 8176e838064658f93fd3ed2a157e3162 238 Pfam PF00072 Response regulator receiver domain 5 112 5.2E-20 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1148 8176e838064658f93fd3ed2a157e3162 238 Pfam PF04397 LytTr DNA-binding domain 142 234 2.4E-20 T 10-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 VF_1148 8176e838064658f93fd3ed2a157e3162 238 Gene3D G3DSA:2.40.50.1020 131 238 1.6E-11 T 10-10-2018 VF_1148 8176e838064658f93fd3ed2a157e3162 238 Gene3D G3DSA:3.40.50.2300 1 125 4.5E-28 T 10-10-2018 VF_1148 8176e838064658f93fd3ed2a157e3162 238 SUPERFAMILY SSF52172 1 118 1.85E-27 T 10-10-2018 IPR011006 CheY-like superfamily VF_1148 8176e838064658f93fd3ed2a157e3162 238 SMART SM00850 141 235 5.2E-25 T 10-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 VF_1148 8176e838064658f93fd3ed2a157e3162 238 SMART SM00448 2 112 6.4E-24 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1147 822e168bbcbe5f2fb3525eb7501ceb95 488 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 327 437 2.4E-22 T 10-10-2018 IPR025299 CstA, C-terminal domain VF_1147 822e168bbcbe5f2fb3525eb7501ceb95 488 Pfam PF02554 Carbon starvation protein CstA 5 163 1.3E-32 T 10-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 VF_A0909 24752ec6d8603545974f2ba92555fd8e 265 Pfam PF02631 RecX family 182 264 6.7E-9 T 10-10-2018 IPR003783 Regulatory protein RecX GO:0006282 VF_A0909 24752ec6d8603545974f2ba92555fd8e 265 Pfam PF02631 RecX family 38 155 1.9E-14 T 10-10-2018 IPR003783 Regulatory protein RecX GO:0006282 VF_A0909 24752ec6d8603545974f2ba92555fd8e 265 Gene3D G3DSA:1.10.10.10 64 105 3.0E-6 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0318 2de14b7693472bc94b362cdf9bb54ab5 272 SUPERFAMILY SSF161098 73 254 4.19E-29 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0318 2de14b7693472bc94b362cdf9bb54ab5 272 Gene3D G3DSA:1.10.3720.10 71 266 2.2E-23 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0318 2de14b7693472bc94b362cdf9bb54ab5 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 265 1.3E-31 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_0885 e29ae9995af0fa0dd74e073e0102f96a 817 Pfam PF02687 FtsX-like permease family 715 808 1.2E-8 T 10-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VF_0885 e29ae9995af0fa0dd74e073e0102f96a 817 Pfam PF02687 FtsX-like permease family 271 368 1.3E-6 T 10-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VF_2350 41fc6c9b82d01d634557f561eb4a93ec 164 Gene3D G3DSA:3.40.250.10 41 163 1.6E-25 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_2350 41fc6c9b82d01d634557f561eb4a93ec 164 SMART SM00450 60 158 3.7E-21 T 10-10-2018 IPR001763 Rhodanese-like domain VF_2350 41fc6c9b82d01d634557f561eb4a93ec 164 Pfam PF00581 Rhodanese-like domain 62 155 1.9E-15 T 10-10-2018 IPR001763 Rhodanese-like domain VF_2350 41fc6c9b82d01d634557f561eb4a93ec 164 SUPERFAMILY SSF52821 36 162 5.11E-30 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_A0782 ba6d8c4c8bb6def3f7208bbbe6646b43 314 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 60 78 1.3E-7 T 10-10-2018 VF_A0782 ba6d8c4c8bb6def3f7208bbbe6646b43 314 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 91 106 1.3E-7 T 10-10-2018 VF_A0782 ba6d8c4c8bb6def3f7208bbbe6646b43 314 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 217 235 1.3E-7 T 10-10-2018 VF_A0782 ba6d8c4c8bb6def3f7208bbbe6646b43 314 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 280 293 1.3E-7 T 10-10-2018 VF_A0782 ba6d8c4c8bb6def3f7208bbbe6646b43 314 Pfam PF01497 Periplasmic binding protein 43 227 3.8E-25 T 10-10-2018 IPR002491 ABC transporter periplasmic binding domain VF_A0782 ba6d8c4c8bb6def3f7208bbbe6646b43 314 Gene3D G3DSA:3.40.50.1980 28 126 2.4E-29 T 10-10-2018 VF_A0782 ba6d8c4c8bb6def3f7208bbbe6646b43 314 SUPERFAMILY SSF53807 40 299 5.1E-53 T 10-10-2018 VF_A0782 ba6d8c4c8bb6def3f7208bbbe6646b43 314 Gene3D G3DSA:3.40.50.1980 129 301 1.2E-44 T 10-10-2018 VF_0630 d3cf51f60f0ee9789da2fcdd7e9b1ca4 422 Gene3D G3DSA:3.30.930.10 2 323 2.5E-119 T 10-10-2018 VF_0630 d3cf51f60f0ee9789da2fcdd7e9b1ca4 422 SUPERFAMILY SSF55681 5 320 6.51E-104 T 10-10-2018 VF_0630 d3cf51f60f0ee9789da2fcdd7e9b1ca4 422 PIRSF PIRSF001549 2 422 2.6E-125 T 10-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 VF_0630 d3cf51f60f0ee9789da2fcdd7e9b1ca4 422 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 420 33.535 T 10-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 VF_0630 d3cf51f60f0ee9789da2fcdd7e9b1ca4 422 SUPERFAMILY SSF52954 327 422 7.69E-26 T 10-10-2018 VF_0630 d3cf51f60f0ee9789da2fcdd7e9b1ca4 422 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 410 2.7E-159 T 10-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 VF_0630 d3cf51f60f0ee9789da2fcdd7e9b1ca4 422 Pfam PF13393 Histidyl-tRNA synthetase 10 312 5.0E-45 T 10-10-2018 VF_0630 d3cf51f60f0ee9789da2fcdd7e9b1ca4 422 Pfam PF03129 Anticodon binding domain 343 420 4.1E-11 T 10-10-2018 IPR004154 Anticodon-binding VF_0630 d3cf51f60f0ee9789da2fcdd7e9b1ca4 422 Gene3D G3DSA:3.40.50.800 326 422 2.5E-26 T 10-10-2018 IPR036621 Anticodon-binding domain superfamily VF_0978 c642b60def7b6c72dae829151c20f3a5 326 Gene3D G3DSA:3.90.180.10 8 311 2.5E-81 T 10-10-2018 VF_0978 c642b60def7b6c72dae829151c20f3a5 326 Gene3D G3DSA:3.40.50.720 135 260 2.5E-81 T 10-10-2018 VF_0978 c642b60def7b6c72dae829151c20f3a5 326 SMART SM00829 10 324 2.7E-9 T 10-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VF_0978 c642b60def7b6c72dae829151c20f3a5 326 SUPERFAMILY SSF50129 1 137 7.61E-28 T 10-10-2018 IPR011032 GroES-like superfamily VF_0978 c642b60def7b6c72dae829151c20f3a5 326 Pfam PF13602 Zinc-binding dehydrogenase 189 323 4.0E-12 T 10-10-2018 VF_0978 c642b60def7b6c72dae829151c20f3a5 326 SUPERFAMILY SSF51735 113 289 2.23E-27 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0978 c642b60def7b6c72dae829151c20f3a5 326 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 102 4.9E-8 T 10-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VF_0538 630fb1c64fcc997554e779fca1c4f263 65 Gene3D G3DSA:3.30.70.1680 1 60 6.2E-30 T 10-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 VF_0538 630fb1c64fcc997554e779fca1c4f263 65 SUPERFAMILY SSF117130 1 54 6.93E-21 T 10-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 VF_0538 630fb1c64fcc997554e779fca1c4f263 65 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 60 2.7E-30 T 10-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 VF_0538 630fb1c64fcc997554e779fca1c4f263 65 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 60 17.001 T 10-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 VF_0538 630fb1c64fcc997554e779fca1c4f263 65 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 3.0E-20 T 10-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 VF_0538 630fb1c64fcc997554e779fca1c4f263 65 Pfam PF02599 Global regulator protein family 1 52 2.0E-26 T 10-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 VF_1592 e54d2533e1a3be75482b438b8c96302f 394 SMART SM00558 105 228 0.002 T 10-10-2018 IPR003347 JmjC domain VF_1592 e54d2533e1a3be75482b438b8c96302f 394 Gene3D G3DSA:2.60.120.650 13 217 1.4E-74 T 10-10-2018 VF_1592 e54d2533e1a3be75482b438b8c96302f 394 Gene3D G3DSA:1.10.10.2510 218 394 2.8E-44 T 10-10-2018 VF_1592 e54d2533e1a3be75482b438b8c96302f 394 Pfam PF08007 Cupin superfamily protein 21 317 2.5E-90 T 10-10-2018 IPR003347 JmjC domain VF_1592 e54d2533e1a3be75482b438b8c96302f 394 SUPERFAMILY SSF51197 17 304 2.75E-71 T 10-10-2018 VF_0158 ba4364866980b96205b6159897992f90 253 Pfam PF06251 Capsule biosynthesis GfcC 23 251 1.1E-81 T 10-10-2018 IPR010425 Domain of unknown function DUF1017 VF_0158 ba4364866980b96205b6159897992f90 253 Gene3D G3DSA:3.10.560.10 153 228 3.8E-16 T 10-10-2018 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 Pfam PF00873 AcrB/AcrD/AcrF family 1 1021 1.6E-158 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 Gene3D G3DSA:3.30.70.1430 38 808 4.0E-253 T 10-10-2018 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 Gene3D G3DSA:3.30.2090.10 172 263 4.0E-253 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_0298 614764bd03fafeea7748c1bae53ac956 1034 SUPERFAMILY SSF82714 177 259 5.62E-16 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_0298 614764bd03fafeea7748c1bae53ac956 1034 SUPERFAMILY SSF82693 136 317 4.76E-6 T 10-10-2018 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 Gene3D G3DSA:3.30.2090.10 713 800 4.0E-253 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_0298 614764bd03fafeea7748c1bae53ac956 1034 SUPERFAMILY SSF82866 294 480 2.49E-34 T 10-10-2018 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 Gene3D G3DSA:1.20.1640.10 8 497 4.0E-253 T 10-10-2018 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 Gene3D G3DSA:3.30.70.1440 666 861 4.0E-253 T 10-10-2018 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 SUPERFAMILY SSF82714 724 797 1.29E-8 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VF_0298 614764bd03fafeea7748c1bae53ac956 1034 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 8.0E-25 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 PRINTS PR00702 Acriflavin resistance protein family signature 431 454 8.0E-25 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 8.0E-25 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 PRINTS PR00702 Acriflavin resistance protein family signature 324 347 8.0E-25 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 PRINTS PR00702 Acriflavin resistance protein family signature 378 402 8.0E-25 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 Gene3D G3DSA:3.30.70.1320 131 320 4.0E-253 T 10-10-2018 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 Gene3D G3DSA:3.30.70.1430 555 665 4.0E-253 T 10-10-2018 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 Gene3D G3DSA:1.20.1640.10 498 1018 4.0E-253 T 10-10-2018 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 SUPERFAMILY SSF82693 38 131 7.32E-17 T 10-10-2018 VF_0298 614764bd03fafeea7748c1bae53ac956 1034 SUPERFAMILY SSF82866 797 1022 5.49E-49 T 10-10-2018 VF_1795 c603423d3902ca129f42f4d33c1b7fa3 349 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 6.1E-5 T 10-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 VF_1795 c603423d3902ca129f42f4d33c1b7fa3 349 PRINTS PR00183 E.coli/Salmonella-type porin signature 95 117 6.1E-5 T 10-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 VF_1795 c603423d3902ca129f42f4d33c1b7fa3 349 PRINTS PR00183 E.coli/Salmonella-type porin signature 229 246 6.1E-5 T 10-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 VF_1795 c603423d3902ca129f42f4d33c1b7fa3 349 PRINTS PR00183 E.coli/Salmonella-type porin signature 52 70 6.1E-5 T 10-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 VF_1795 c603423d3902ca129f42f4d33c1b7fa3 349 Gene3D G3DSA:2.40.160.10 22 349 1.4E-42 T 10-10-2018 IPR023614 Porin domain superfamily VF_1795 c603423d3902ca129f42f4d33c1b7fa3 349 SUPERFAMILY SSF56935 25 349 2.84E-48 T 10-10-2018 VF_1795 c603423d3902ca129f42f4d33c1b7fa3 349 Pfam PF13609 Gram-negative porin 8 320 1.8E-24 T 10-10-2018 VF_1594 5d6d90e598d66225bb833045333331dd 321 Gene3D G3DSA:3.40.50.300 1 320 8.2E-98 T 10-10-2018 VF_1594 5d6d90e598d66225bb833045333331dd 321 Pfam PF00005 ABC transporter 24 180 8.1E-28 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1594 5d6d90e598d66225bb833045333331dd 321 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1594 5d6d90e598d66225bb833045333331dd 321 SUPERFAMILY SSF52540 31 301 2.44E-69 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1594 5d6d90e598d66225bb833045333331dd 321 SMART SM00382 32 238 7.2E-14 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1594 5d6d90e598d66225bb833045333331dd 321 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 296 1.5E-18 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_1594 5d6d90e598d66225bb833045333331dd 321 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 315 2.2E-23 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_A0116 8167d29ad5ee05134cc737b8d34f78ef 309 SUPERFAMILY SSF55347 121 264 2.91E-47 T 10-10-2018 VF_A0116 8167d29ad5ee05134cc737b8d34f78ef 309 Gene3D G3DSA:3.30.360.10 119 309 2.3E-57 T 10-10-2018 VF_A0116 8167d29ad5ee05134cc737b8d34f78ef 309 Gene3D G3DSA:3.40.50.720 1 118 3.0E-25 T 10-10-2018 VF_A0116 8167d29ad5ee05134cc737b8d34f78ef 309 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 119 3.2E-14 T 10-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 VF_A0116 8167d29ad5ee05134cc737b8d34f78ef 309 SUPERFAMILY SSF51735 1 166 1.88E-42 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_2481 ec5138a1218555e54219597389339b3e 322 Gene3D G3DSA:3.40.50.1820 23 321 1.0E-45 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_2481 ec5138a1218555e54219597389339b3e 322 Pfam PF12146 Serine aminopeptidase, S33 50 302 1.3E-56 T 10-10-2018 IPR022742 Serine aminopeptidase, S33 VF_2481 ec5138a1218555e54219597389339b3e 322 PRINTS PR00111 Alpha/beta hydrolase fold signature 259 273 4.8E-7 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_2481 ec5138a1218555e54219597389339b3e 322 PRINTS PR00111 Alpha/beta hydrolase fold signature 78 93 4.8E-7 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_2481 ec5138a1218555e54219597389339b3e 322 PRINTS PR00111 Alpha/beta hydrolase fold signature 132 145 4.8E-7 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_2481 ec5138a1218555e54219597389339b3e 322 SUPERFAMILY SSF53474 37 312 2.03E-41 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_2011 b6f354baed0addca0a3375d4ca5833a8 149 Pfam PF05926 Phage head completion protein (GPL) 21 140 1.5E-10 T 10-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 VF_0834 923b76447970ab3bd59fb8a6948aefbc 758 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 9 688 4.7E-178 T 10-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 VF_0834 923b76447970ab3bd59fb8a6948aefbc 758 Pfam PF07670 Nucleoside recognition 511 692 1.8E-36 T 10-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VF_0834 923b76447970ab3bd59fb8a6948aefbc 758 Pfam PF07670 Nucleoside recognition 351 442 1.8E-13 T 10-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VF_0834 923b76447970ab3bd59fb8a6948aefbc 758 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 157 5.2E-12 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VF_0834 923b76447970ab3bd59fb8a6948aefbc 758 Pfam PF02421 Ferrous iron transport protein B 4 161 3.2E-56 T 10-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 VF_0834 923b76447970ab3bd59fb8a6948aefbc 758 Gene3D G3DSA:3.40.50.300 3 191 2.0E-41 T 10-10-2018 VF_0834 923b76447970ab3bd59fb8a6948aefbc 758 SUPERFAMILY SSF52540 4 180 2.32E-37 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0834 923b76447970ab3bd59fb8a6948aefbc 758 Pfam PF07664 Ferrous iron transport protein B C terminus 454 506 7.5E-19 T 10-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 VF_1258 cff4902b38c23671d880a17b5826ea83 136 Pfam PF03061 Thioesterase superfamily 29 102 1.2E-20 T 10-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 VF_1258 cff4902b38c23671d880a17b5826ea83 136 Gene3D G3DSA:3.10.129.10 3 136 1.0E-41 T 10-10-2018 VF_1258 cff4902b38c23671d880a17b5826ea83 136 SUPERFAMILY SSF54637 11 134 5.58E-40 T 10-10-2018 IPR029069 HotDog domain superfamily VF_1414 a36a06d60cbc28f42f6a1853f2cdd000 202 Pfam PF00677 Lumazine binding domain 100 184 1.9E-21 T 10-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_1414 a36a06d60cbc28f42f6a1853f2cdd000 202 Pfam PF00677 Lumazine binding domain 3 87 2.2E-21 T 10-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_1414 a36a06d60cbc28f42f6a1853f2cdd000 202 SUPERFAMILY SSF63380 1 93 2.81E-26 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VF_1414 a36a06d60cbc28f42f6a1853f2cdd000 202 Gene3D G3DSA:2.40.30.20 94 190 1.2E-27 T 10-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_1414 a36a06d60cbc28f42f6a1853f2cdd000 202 Gene3D G3DSA:2.40.30.20 1 89 7.7E-31 T 10-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VF_1414 a36a06d60cbc28f42f6a1853f2cdd000 202 PIRSF PIRSF000498 1 202 4.8E-67 T 10-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_1414 a36a06d60cbc28f42f6a1853f2cdd000 202 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 202 1.6E-69 T 10-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_1414 a36a06d60cbc28f42f6a1853f2cdd000 202 SUPERFAMILY SSF63380 93 199 1.11E-29 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VF_A0136 98252a6753ebb0c49ce7f9ca0284f65b 375 Pfam PF13391 HNH endonuclease 277 328 5.9E-5 T 10-10-2018 IPR003615 HNH nuclease VF_A0983 c99b37923f55063a4aae22d088c79754 182 Pfam PF11655 Protein of unknown function (DUF2589) 16 158 2.5E-36 T 10-10-2018 IPR024510 Protein of unknown function DUF2589 VF_0922 e1e5d9088701efd1827c49edf716bffa 111 SUPERFAMILY SSF52833 1 102 9.8E-34 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_0922 e1e5d9088701efd1827c49edf716bffa 111 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 7.0E-46 T 10-10-2018 IPR004480 Monothiol glutaredoxin-related VF_0922 e1e5d9088701efd1827c49edf716bffa 111 Gene3D G3DSA:3.40.30.10 2 106 2.5E-30 T 10-10-2018 VF_0922 e1e5d9088701efd1827c49edf716bffa 111 Pfam PF00462 Glutaredoxin 16 80 6.4E-17 T 10-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 VF_0922 e1e5d9088701efd1827c49edf716bffa 111 PIRSF PIRSF005894 1 107 3.7E-51 T 10-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 VF_A0071 308eecaf0fd681f7b759755a25a8ba84 177 Gene3D G3DSA:3.90.1520.10 1 176 5.0E-54 T 10-10-2018 IPR038158 H-NOX domain superfamily GO:0020037 KEGG: 00230+4.6.1.2|Reactome: R-HSA-392154 VF_A0071 308eecaf0fd681f7b759755a25a8ba84 177 Pfam PF07700 Haem-NO-binding 2 160 7.5E-37 T 10-10-2018 IPR011644 Heme NO-binding GO:0020037 KEGG: 00230+4.6.1.2|Reactome: R-HSA-392154 VF_A0071 308eecaf0fd681f7b759755a25a8ba84 177 SUPERFAMILY SSF111126 1 174 1.67E-48 T 10-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily VF_1694 11dadb34b2700be0b800b1fe0414eb11 426 Pfam PF08245 Mur ligase middle domain 54 199 3.4E-8 T 10-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VF_1694 11dadb34b2700be0b800b1fe0414eb11 426 Gene3D G3DSA:3.90.190.20 290 426 5.2E-32 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VF_1694 11dadb34b2700be0b800b1fe0414eb11 426 Gene3D G3DSA:3.40.1190.10 1 289 1.9E-94 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VF_1694 11dadb34b2700be0b800b1fe0414eb11 426 SUPERFAMILY SSF53623 13 285 1.57E-86 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VF_1694 11dadb34b2700be0b800b1fe0414eb11 426 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 144 159 - T 10-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 VF_1694 11dadb34b2700be0b800b1fe0414eb11 426 Pfam PF02875 Mur ligase family, glutamate ligase domain 289 344 1.5E-8 T 10-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VF_1694 11dadb34b2700be0b800b1fe0414eb11 426 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 52 75 - T 10-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 VF_1694 11dadb34b2700be0b800b1fe0414eb11 426 PIRSF PIRSF001563 6 426 1.4E-107 T 10-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 VF_1694 11dadb34b2700be0b800b1fe0414eb11 426 TIGRFAM TIGR01499 folC: bifunctional protein FolC 32 421 1.0E-105 T 10-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 VF_1694 11dadb34b2700be0b800b1fe0414eb11 426 SUPERFAMILY SSF53244 290 424 1.08E-32 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VF_0671 0e912772f8618f182e118dbd24dd7871 221 Gene3D G3DSA:1.10.4190.10 1 197 9.8E-51 T 10-10-2018 IPR038277 UreF domain superfamily VF_0671 0e912772f8618f182e118dbd24dd7871 221 PIRSF PIRSF009467 1 221 4.9E-60 T 10-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 VF_0671 0e912772f8618f182e118dbd24dd7871 221 Pfam PF01730 UreF 35 178 5.4E-34 T 10-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 VF_0671 0e912772f8618f182e118dbd24dd7871 221 Hamap MF_01385 Urease accessory protein UreF [ureF]. 3 221 30.857 T 10-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 VF_1417 b54ee0643da1d6cf9f1b24202a167396 438 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 18 409 4.0E-149 T 10-10-2018 VF_1417 b54ee0643da1d6cf9f1b24202a167396 438 Pfam PF04055 Radical SAM superfamily 25 196 2.2E-12 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_1417 b54ee0643da1d6cf9f1b24202a167396 438 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 302 391 1.8E-18 T 10-10-2018 IPR023885 4Fe4S-binding SPASM domain VF_1417 b54ee0643da1d6cf9f1b24202a167396 438 Gene3D G3DSA:3.20.20.70 15 412 2.2E-112 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1417 b54ee0643da1d6cf9f1b24202a167396 438 SUPERFAMILY SSF102114 24 372 3.01E-37 T 10-10-2018 VF_1417 b54ee0643da1d6cf9f1b24202a167396 438 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 188 294 6.0E-6 T 10-10-2018 VF_1417 b54ee0643da1d6cf9f1b24202a167396 438 Pfam PF13186 Iron-sulfur cluster-binding domain 303 363 1.3E-7 T 10-10-2018 IPR023885 4Fe4S-binding SPASM domain VF_1169 132a8e326eb3038e574dc41861e5a926 161 Pfam PF03061 Thioesterase superfamily 22 96 3.8E-15 T 10-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 VF_1169 132a8e326eb3038e574dc41861e5a926 161 SUPERFAMILY SSF54637 6 154 2.16E-41 T 10-10-2018 IPR029069 HotDog domain superfamily VF_1169 132a8e326eb3038e574dc41861e5a926 161 Gene3D G3DSA:3.10.129.10 3 160 4.7E-43 T 10-10-2018 VF_A0075 ff8eeb17b99087a30f1843b9c830c051 1464 SUPERFAMILY SSF49899 536 769 3.1E-22 T 10-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily VF_A0075 ff8eeb17b99087a30f1843b9c830c051 1464 SUPERFAMILY SSF49899 287 502 1.71E-34 T 10-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily VF_A0075 ff8eeb17b99087a30f1843b9c830c051 1464 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 340 496 9.9E-33 T 10-10-2018 VF_A0075 ff8eeb17b99087a30f1843b9c830c051 1464 Gene3D G3DSA:2.60.120.200 512 772 2.8E-9 T 10-10-2018 VF_A0075 ff8eeb17b99087a30f1843b9c830c051 1464 Gene3D G3DSA:2.60.120.200 278 502 4.7E-32 T 10-10-2018 VF_A0075 ff8eeb17b99087a30f1843b9c830c051 1464 SMART SM00560 356 494 0.0051 T 10-10-2018 IPR006558 LamG-like jellyroll fold VF_2386 0d561478ce060db724d02fdcef186aba 152 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 81 94 2.6E-17 T 10-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 VF_2386 0d561478ce060db724d02fdcef186aba 152 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 98 112 2.6E-17 T 10-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 VF_2386 0d561478ce060db724d02fdcef186aba 152 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 113 126 2.6E-17 T 10-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 VF_2386 0d561478ce060db724d02fdcef186aba 152 Gene3D G3DSA:2.40.50.100 73 152 2.0E-31 T 10-10-2018 VF_2386 0d561478ce060db724d02fdcef186aba 152 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 108 125 - T 10-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VF_2386 0d561478ce060db724d02fdcef186aba 152 Pfam PF00364 Biotin-requiring enzyme 78 151 3.0E-23 T 10-10-2018 IPR000089 Biotin/lipoyl attachment VF_2386 0d561478ce060db724d02fdcef186aba 152 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 152 9.0E-60 T 10-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 VF_2386 0d561478ce060db724d02fdcef186aba 152 SUPERFAMILY SSF51230 77 152 2.22E-25 T 10-10-2018 IPR011053 Single hybrid motif VF_1310 d0d1651dc83836089e836c5e9fcbf053 316 Gene3D G3DSA:3.40.50.12370 1 313 6.9E-101 T 10-10-2018 VF_1310 d0d1651dc83836089e836c5e9fcbf053 316 Pfam PF00582 Universal stress protein family 4 149 2.2E-11 T 10-10-2018 IPR006016 UspA VF_1310 d0d1651dc83836089e836c5e9fcbf053 316 Pfam PF00582 Universal stress protein family 178 302 1.6E-12 T 10-10-2018 IPR006016 UspA VF_1310 d0d1651dc83836089e836c5e9fcbf053 316 SUPERFAMILY SSF52402 4 159 4.52E-21 T 10-10-2018 VF_1310 d0d1651dc83836089e836c5e9fcbf053 316 SUPERFAMILY SSF52402 159 309 1.59E-20 T 10-10-2018 VF_2216 8bb82705e04332081a6408a0cbb962c7 211 Pfam PF00043 Glutathione S-transferase, C-terminal domain 123 194 4.5E-9 T 10-10-2018 IPR004046 Glutathione S-transferase, C-terminal VF_2216 8bb82705e04332081a6408a0cbb962c7 211 Gene3D G3DSA:1.20.1050.10 89 193 3.7E-78 T 10-10-2018 VF_2216 8bb82705e04332081a6408a0cbb962c7 211 Pfam PF13417 Glutathione S-transferase, N-terminal domain 13 87 1.8E-16 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VF_2216 8bb82705e04332081a6408a0cbb962c7 211 SUPERFAMILY SSF47616 82 207 3.98E-23 T 10-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VF_2216 8bb82705e04332081a6408a0cbb962c7 211 SUPERFAMILY SSF52833 8 86 8.57E-22 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_2216 8bb82705e04332081a6408a0cbb962c7 211 Gene3D G3DSA:3.40.30.10 11 202 3.7E-78 T 10-10-2018 VF_0715 51170221b45f183a2b39e39e163df828 309 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 11 56 6.1E-18 T 10-10-2018 IPR025713 Motility protein B, N-terminal domain VF_0715 51170221b45f183a2b39e39e163df828 309 SUPERFAMILY SSF103088 176 293 1.44E-29 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_0715 51170221b45f183a2b39e39e163df828 309 Gene3D G3DSA:3.30.1330.60 147 295 1.2E-50 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_0715 51170221b45f183a2b39e39e163df828 309 Pfam PF00691 OmpA family 189 287 1.4E-17 T 10-10-2018 IPR006665 OmpA-like domain VF_A0500 7c8aa04d83d2dda7f1c28ec6570f548a 80 Pfam PF11173 Protein of unknown function (DUF2960) 1 79 6.5E-34 T 10-10-2018 IPR021343 Protein of unknown function DUF2960 VF_2212 1417187637e67e2d587e868edde7d6b7 123 Hamap MF_00048 UPF0102 protein YraN [yraN]. 7 119 22.679 T 10-10-2018 IPR003509 Uncharacterised protein family UPF0102 VF_2212 1417187637e67e2d587e868edde7d6b7 123 Gene3D G3DSA:3.40.1350.10 14 122 2.9E-30 T 10-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 VF_2212 1417187637e67e2d587e868edde7d6b7 123 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 7 120 2.0E-34 T 10-10-2018 IPR003509 Uncharacterised protein family UPF0102 VF_2212 1417187637e67e2d587e868edde7d6b7 123 SUPERFAMILY SSF52980 8 113 4.4E-20 T 10-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VF_2212 1417187637e67e2d587e868edde7d6b7 123 Pfam PF02021 Uncharacterised protein family UPF0102 15 106 3.8E-26 T 10-10-2018 IPR003509 Uncharacterised protein family UPF0102 VF_2573 538304063846f50af8429fe75cbb61c6 265 PIRSF PIRSF009320 2 79 3.9E-15 T 10-10-2018 VF_2573 538304063846f50af8429fe75cbb61c6 265 PIRSF PIRSF009320 90 262 1.3E-8 T 10-10-2018 VF_2573 538304063846f50af8429fe75cbb61c6 265 Pfam PF13614 AAA domain 2 178 2.6E-60 T 10-10-2018 IPR025669 AAA domain VF_2573 538304063846f50af8429fe75cbb61c6 265 Gene3D G3DSA:3.40.50.300 1 264 3.2E-76 T 10-10-2018 VF_2573 538304063846f50af8429fe75cbb61c6 265 SUPERFAMILY SSF52540 2 256 1.33E-65 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0939 ac451361caa7ec889b0275ec68a5f74c 292 Gene3D G3DSA:3.40.50.12300 2 292 3.3E-77 T 10-10-2018 IPR038136 Gluconeogenesis factor superfamily VF_0939 ac451361caa7ec889b0275ec68a5f74c 292 Hamap MF_00973 Gluconeogenesis factor. 2 292 29.42 T 10-10-2018 IPR010119 Gluconeogenesis factor VF_0939 ac451361caa7ec889b0275ec68a5f74c 292 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 6 263 1.1E-95 T 10-10-2018 IPR010119 Gluconeogenesis factor VF_0939 ac451361caa7ec889b0275ec68a5f74c 292 Pfam PF01933 Uncharacterised protein family UPF0052 6 283 1.6E-74 T 10-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 VF_0939 ac451361caa7ec889b0275ec68a5f74c 292 SUPERFAMILY SSF142338 4 288 1.7E-83 T 10-10-2018 VF_A0429 cc3d3dea1964a63195521b5a832629e3 259 Gene3D G3DSA:3.40.50.150 9 259 9.4E-57 T 10-10-2018 VF_A0429 cc3d3dea1964a63195521b5a832629e3 259 SUPERFAMILY SSF53335 6 241 3.04E-36 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_A0429 cc3d3dea1964a63195521b5a832629e3 259 Pfam PF08241 Methyltransferase domain 52 149 3.0E-15 T 10-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 VF_A0429 cc3d3dea1964a63195521b5a832629e3 259 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 3 259 39.593 T 10-10-2018 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 VF_A0373 fac4e10b783443cb7d66996de593ce7c 424 SUPERFAMILY SSF50182 191 258 1.11E-10 T 10-10-2018 IPR010920 LSM domain superfamily VF_A0373 fac4e10b783443cb7d66996de593ce7c 424 Pfam PF00924 Mechanosensitive ion channel 150 396 2.7E-41 T 10-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VF_A0373 fac4e10b783443cb7d66996de593ce7c 424 Gene3D G3DSA:2.30.30.60 208 254 7.1E-6 T 10-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VF_1972 0093e5240ee3984f667936b7e66d26e2 442 ProSitePatterns PS00161 Isocitrate lyase signature. 197 202 - T 10-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 VF_1972 0093e5240ee3984f667936b7e66d26e2 442 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 15 259 1.1E-111 T 10-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 VF_1972 0093e5240ee3984f667936b7e66d26e2 442 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 260 438 4.6E-87 T 10-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 VF_1972 0093e5240ee3984f667936b7e66d26e2 442 Gene3D G3DSA:3.20.20.60 6 421 5.7E-178 T 10-10-2018 VF_1972 0093e5240ee3984f667936b7e66d26e2 442 SUPERFAMILY SSF51621 8 438 4.17E-152 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VF_1972 0093e5240ee3984f667936b7e66d26e2 442 PIRSF PIRSF001362 5 441 5.5E-224 T 10-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 VF_1972 0093e5240ee3984f667936b7e66d26e2 442 Pfam PF00463 Isocitrate lyase family 18 260 4.6E-58 T 10-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 VF_0791 c2affb5e4d010b2cdcccce73852978de 293 Pfam PF00486 Transcriptional regulatory protein, C terminal 33 107 6.7E-20 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_0791 c2affb5e4d010b2cdcccce73852978de 293 SUPERFAMILY SSF46894 5 108 9.92E-19 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_0791 c2affb5e4d010b2cdcccce73852978de 293 SMART SM00862 30 107 7.6E-19 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_0791 c2affb5e4d010b2cdcccce73852978de 293 Gene3D G3DSA:1.10.10.10 1 111 1.1E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0914 12557f9800e53aebc03ee3b6c556b1c7 135 Gene3D G3DSA:2.170.150.20 1 135 5.0E-59 T 10-10-2018 VF_0914 12557f9800e53aebc03ee3b6c556b1c7 135 Pfam PF01641 SelR domain 14 132 3.7E-53 T 10-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VF_0914 12557f9800e53aebc03ee3b6c556b1c7 135 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 10 133 6.5E-56 T 10-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VF_0914 12557f9800e53aebc03ee3b6c556b1c7 135 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 11 134 35.379 T 10-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VF_0914 12557f9800e53aebc03ee3b6c556b1c7 135 SUPERFAMILY SSF51316 9 133 1.52E-56 T 10-10-2018 IPR011057 Mss4-like superfamily VF_A0800 b8589b258bc8b362f503b90cb460b135 369 SMART SM00382 28 210 5.7E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0800 b8589b258bc8b362f503b90cb460b135 369 Gene3D G3DSA:2.40.50.100 239 361 1.0E-44 T 10-10-2018 VF_A0800 b8589b258bc8b362f503b90cb460b135 369 Gene3D G3DSA:3.40.50.300 1 238 7.4E-73 T 10-10-2018 VF_A0800 b8589b258bc8b362f503b90cb460b135 369 Gene3D G3DSA:2.40.50.140 287 344 1.0E-44 T 10-10-2018 VF_A0800 b8589b258bc8b362f503b90cb460b135 369 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A0800 b8589b258bc8b362f503b90cb460b135 369 Pfam PF00005 ABC transporter 20 161 5.7E-32 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A0800 b8589b258bc8b362f503b90cb460b135 369 Pfam PF08402 TOBE domain 281 353 1.6E-8 T 10-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 VF_A0800 b8589b258bc8b362f503b90cb460b135 369 SUPERFAMILY SSF50331 236 363 8.79E-31 T 10-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VF_A0800 b8589b258bc8b362f503b90cb460b135 369 SUPERFAMILY SSF52540 4 244 1.28E-84 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1375 c47412f92b0657051d93e7f94c24918f 242 SUPERFAMILY SSF160467 2 95 1.31E-12 T 10-10-2018 VF_1375 c47412f92b0657051d93e7f94c24918f 242 SUPERFAMILY SSF50891 90 220 3.15E-44 T 10-10-2018 IPR029000 Cyclophilin-like domain superfamily VF_1375 c47412f92b0657051d93e7f94c24918f 242 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 7 213 9.8E-49 T 10-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 VF_1375 c47412f92b0657051d93e7f94c24918f 242 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 1 203 7.9E-65 T 10-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D VF_1375 c47412f92b0657051d93e7f94c24918f 242 Gene3D G3DSA:3.30.1360.40 1 81 8.9E-11 T 10-10-2018 VF_1375 c47412f92b0657051d93e7f94c24918f 242 SMART SM00796 1 204 8.9E-86 T 10-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D VF_1375 c47412f92b0657051d93e7f94c24918f 242 Gene3D G3DSA:2.40.100.10 89 227 3.9E-54 T 10-10-2018 IPR029000 Cyclophilin-like domain superfamily VF_A0947 4eb8bf8180eae591838578866d1180a1 82 Pfam PF11153 Protein of unknown function (DUF2931) 18 80 1.5E-10 T 10-10-2018 IPR021326 Protein of unknown function DUF2931 VF_A0370 c7ede1de7d5c5e662141d83b8ae6c071 467 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 14 340 4.8E-74 T 10-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 VF_A0370 c7ede1de7d5c5e662141d83b8ae6c071 467 SUPERFAMILY SSF52794 371 465 9.94E-29 T 10-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VF_A0370 c7ede1de7d5c5e662141d83b8ae6c071 467 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 373 456 4.3E-30 T 10-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 VF_A0370 c7ede1de7d5c5e662141d83b8ae6c071 467 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 373 455 8.9E-16 T 10-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VF_A0370 c7ede1de7d5c5e662141d83b8ae6c071 467 Gene3D G3DSA:3.40.50.2300 369 467 2.0E-33 T 10-10-2018 VF_0067 36ef7d812ad92ad04c346c077addd148 815 Pfam PF01295 Adenylate cyclase, class-I 197 804 1.8E-252 T 10-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 VF_0067 36ef7d812ad92ad04c346c077addd148 815 PIRSF PIRSF001444 1 814 0.0 T 10-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 VF_0067 36ef7d812ad92ad04c346c077addd148 815 Pfam PF12633 Adenylate cyclase NT domain 3 169 4.3E-64 T 10-10-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 VF_0067 36ef7d812ad92ad04c346c077addd148 815 ProSitePatterns PS01092 Adenylate cyclase class-I signature 1. 211 222 - T 10-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 VF_1773 dcc21feb6384c9757337acc95bcd86e2 423 Pfam PF04285 Protein of unknown function (DUF444) 3 421 3.3E-185 T 10-10-2018 IPR006698 Uncharacterised protein family UPF0229 VF_1773 dcc21feb6384c9757337acc95bcd86e2 423 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 423 39.537 T 10-10-2018 IPR006698 Uncharacterised protein family UPF0229 VF_1773 dcc21feb6384c9757337acc95bcd86e2 423 SUPERFAMILY SSF53300 252 419 8.09E-6 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_0379 9b2ff564c57d1ea51f8f0ad1c8bb4da1 481 SUPERFAMILY SSF111283 19 480 1.83E-129 T 10-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 VF_0379 9b2ff564c57d1ea51f8f0ad1c8bb4da1 481 Gene3D G3DSA:3.30.2290.10 10 240 3.8E-15 T 10-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal VF_0379 9b2ff564c57d1ea51f8f0ad1c8bb4da1 481 PIRSF PIRSF004919 16 481 4.9E-142 T 10-10-2018 IPR025502 TldD VF_0379 9b2ff564c57d1ea51f8f0ad1c8bb4da1 481 Pfam PF01523 Putative modulator of DNA gyrase 35 332 9.4E-67 T 10-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 Gene3D G3DSA:3.30.360.10 158 322 8.3E-127 T 10-10-2018 VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 109 4.3E-31 T 10-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 SUPERFAMILY SSF51735 2 185 1.16E-50 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 PIRSF PIRSF000149 1 339 2.6E-127 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 Hamap MF_01640 D-erythrose-4-phosphate dehydrogenase [epd]. 1 339 63.031 T 10-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 116 129 9.4E-29 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 180 196 9.4E-29 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 236 253 9.4E-29 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 153 171 9.4E-29 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 276 291 9.4E-29 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 164 320 3.8E-54 T 10-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 SMART SM00846 2 159 2.1E-74 T 10-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 SUPERFAMILY SSF55347 159 321 1.07E-57 T 10-10-2018 VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 3 332 4.2E-182 T 10-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 VF_0441 ff3d70b84b9d6f680d48d6f74d481b89 339 Gene3D G3DSA:3.40.50.720 3 332 8.3E-127 T 10-10-2018 VF_1718 1bdca6d6767beb3a2349ce1835755169 390 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 4 385 3.1E-112 T 10-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 VF_1718 1bdca6d6767beb3a2349ce1835755169 390 Pfam PF00155 Aminotransferase class I and II 30 379 2.7E-40 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VF_1718 1bdca6d6767beb3a2349ce1835755169 390 Gene3D G3DSA:3.40.640.10 42 283 8.0E-117 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_1718 1bdca6d6767beb3a2349ce1835755169 390 SUPERFAMILY SSF53383 1 387 2.13E-82 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_1718 1bdca6d6767beb3a2349ce1835755169 390 Gene3D G3DSA:3.90.1150.10 32 378 8.0E-117 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_2264 b2e47c4a24f1ac33457a9dfe04788744 612 SUPERFAMILY SSF56801 8 605 1.31E-115 T 10-10-2018 VF_2264 b2e47c4a24f1ac33457a9dfe04788744 612 Pfam PF00501 AMP-binding enzyme 14 474 1.8E-100 T 10-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VF_2264 b2e47c4a24f1ac33457a9dfe04788744 612 Gene3D G3DSA:3.40.50.12780 4 322 4.0E-54 T 10-10-2018 VF_2264 b2e47c4a24f1ac33457a9dfe04788744 612 ProSitePatterns PS00455 Putative AMP-binding domain signature. 191 202 - T 10-10-2018 IPR020845 AMP-binding, conserved site VF_2264 b2e47c4a24f1ac33457a9dfe04788744 612 Gene3D G3DSA:3.40.50.12780 325 465 2.3E-35 T 10-10-2018 VF_1181 54b6126bca8121de861b63fdda7de5e8 118 Pfam PF10973 Protein of unknown function (DUF2799) 30 113 1.1E-18 T 10-10-2018 IPR021242 Protein of unknown function DUF2799 VF_1613 fd43b51cfa2faaeb3b1d7b543d0e86c5 249 Pfam PF00005 ABC transporter 19 174 6.4E-31 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1613 fd43b51cfa2faaeb3b1d7b543d0e86c5 249 Gene3D G3DSA:3.40.50.300 4 246 8.4E-62 T 10-10-2018 VF_1613 fd43b51cfa2faaeb3b1d7b543d0e86c5 249 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 4 249 4.0E-125 T 10-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 VF_1613 fd43b51cfa2faaeb3b1d7b543d0e86c5 249 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1613 fd43b51cfa2faaeb3b1d7b543d0e86c5 249 SUPERFAMILY SSF52540 4 236 5.44E-56 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1613 fd43b51cfa2faaeb3b1d7b543d0e86c5 249 SMART SM00382 28 220 1.5E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A1163 bde198277868aee510501c4213a236ef 438 Gene3D G3DSA:1.20.1600.10 22 430 4.4E-80 T 10-10-2018 VF_A1163 bde198277868aee510501c4213a236ef 438 Pfam PF02321 Outer membrane efflux protein 230 414 6.9E-29 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VF_A1163 bde198277868aee510501c4213a236ef 438 Pfam PF02321 Outer membrane efflux protein 24 198 2.5E-21 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VF_A1163 bde198277868aee510501c4213a236ef 438 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 20 429 1.5E-114 T 10-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 VF_A1163 bde198277868aee510501c4213a236ef 438 SUPERFAMILY SSF56954 23 428 1.44E-86 T 10-10-2018 VF_A0412 e60d947dc303056814d6b6970f17f7ef 342 PIRSF PIRSF001237 1 342 2.2E-142 T 10-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_A0412 e60d947dc303056814d6b6970f17f7ef 342 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 4 342 8.0E-140 T 10-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_A0412 e60d947dc303056814d6b6970f17f7ef 342 ProSitePatterns PS00482 Dihydroorotase signature 1. 11 19 - T 10-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_A0412 e60d947dc303056814d6b6970f17f7ef 342 Pfam PF01979 Amidohydrolase family 11 317 3.4E-17 T 10-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VF_A0412 e60d947dc303056814d6b6970f17f7ef 342 Hamap MF_00219 Dihydroorotase [pyrC]. 2 342 47.151 T 10-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_A0412 e60d947dc303056814d6b6970f17f7ef 342 SUPERFAMILY SSF51556 1 341 8.75E-147 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_A0412 e60d947dc303056814d6b6970f17f7ef 342 ProSitePatterns PS00483 Dihydroorotase signature 2. 244 255 - T 10-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VF_A0412 e60d947dc303056814d6b6970f17f7ef 342 Gene3D G3DSA:3.20.20.140 2 342 1.7E-108 T 10-10-2018 VF_A1072 a424ce582ace705331d4508a682628eb 524 SUPERFAMILY SSF58104 268 524 4.88E-60 T 10-10-2018 VF_A1072 a424ce582ace705331d4508a682628eb 524 Gene3D G3DSA:1.10.287.950 201 524 7.1E-58 T 10-10-2018 VF_A1072 a424ce582ace705331d4508a682628eb 524 SMART SM00283 262 523 8.1E-56 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A1072 a424ce582ace705331d4508a682628eb 524 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 310 485 4.0E-35 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0305 368f662e1892ecba49c9997b21f96d06 153 SUPERFAMILY SSF103039 1 153 2.49E-37 T 10-10-2018 IPR028976 CheC-like superfamily VF_0305 368f662e1892ecba49c9997b21f96d06 153 Pfam PF13690 Chemotaxis phosphatase CheX 42 139 1.4E-22 T 10-10-2018 IPR028051 Chemotaxis phosphatase CheX-like domain VF_0305 368f662e1892ecba49c9997b21f96d06 153 Gene3D G3DSA:3.40.1550.10 1 153 4.5E-46 T 10-10-2018 IPR028976 CheC-like superfamily VF_2070 2a3d82e0f4f2267c7ad1a36a6a768e5d 257 SUPERFAMILY SSF64167 8 251 6.67E-83 T 10-10-2018 VF_2070 2a3d82e0f4f2267c7ad1a36a6a768e5d 257 Pfam PF01975 Survival protein SurE 10 188 1.7E-57 T 10-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 VF_2070 2a3d82e0f4f2267c7ad1a36a6a768e5d 257 Gene3D G3DSA:3.40.1210.10 1 256 1.5E-91 T 10-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 VF_2070 2a3d82e0f4f2267c7ad1a36a6a768e5d 257 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 8 256 39.84 T 10-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 VF_2070 2a3d82e0f4f2267c7ad1a36a6a768e5d 257 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 9 239 3.1E-71 T 10-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 VF_2448 6c32ff5db5f11a5375f3c3d365723414 107 Pfam PF00581 Rhodanese-like domain 12 100 5.1E-15 T 10-10-2018 IPR001763 Rhodanese-like domain VF_2448 6c32ff5db5f11a5375f3c3d365723414 107 Gene3D G3DSA:3.40.250.10 1 102 2.7E-27 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_2448 6c32ff5db5f11a5375f3c3d365723414 107 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 107 31.84 T 10-10-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927 VF_2448 6c32ff5db5f11a5375f3c3d365723414 107 SMART SM00450 9 104 4.9E-22 T 10-10-2018 IPR001763 Rhodanese-like domain VF_2448 6c32ff5db5f11a5375f3c3d365723414 107 SUPERFAMILY SSF52821 1 107 1.96E-31 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily VF_2547 7b91d3e79dadd97e99bc438d613646be 481 Pfam PF02386 Cation transport protein 46 475 4.4E-52 T 10-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 VF_2547 7b91d3e79dadd97e99bc438d613646be 481 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 85 464 3.0E-110 T 10-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 VF_2547 7b91d3e79dadd97e99bc438d613646be 481 PIRSF PIRSF006247 1 481 1.6E-165 T 10-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 VF_1254 9c556de9265d364a7ee447957a53851a 485 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 9 469 1.3E-159 T 10-10-2018 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 VF_1254 9c556de9265d364a7ee447957a53851a 485 Pfam PF03553 Na+/H+ antiporter family 161 465 6.2E-51 T 10-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 VF_0459 2bffcd55c06d31a040171eafd863643d 277 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 4 262 1.4E-92 T 10-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 VF_0459 2bffcd55c06d31a040171eafd863643d 277 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 257 1.0E-81 T 10-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 VF_0459 2bffcd55c06d31a040171eafd863643d 277 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 262 20.152 T 10-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 VF_0459 2bffcd55c06d31a040171eafd863643d 277 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 142 154 - T 10-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 VF_2174 0bccd95249d43c872536dd65b5ed05b7 227 SUPERFAMILY SSF53056 9 221 6.67E-73 T 10-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 VF_2174 0bccd95249d43c872536dd65b5ed05b7 227 SMART SM00947 39 201 5.6E-63 T 10-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 VF_2174 0bccd95249d43c872536dd65b5ed05b7 227 Pfam PF00484 Carbonic anhydrase 47 196 4.3E-47 T 10-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 VF_2174 0bccd95249d43c872536dd65b5ed05b7 227 Gene3D G3DSA:3.40.1050.10 8 225 8.7E-85 T 10-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 VF_2174 0bccd95249d43c872536dd65b5ed05b7 227 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 51 58 - T 10-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 VF_2174 0bccd95249d43c872536dd65b5ed05b7 227 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 91 111 - T 10-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 VF_A0761 a6d554c5fd9c5b95b209ff5fb2ddf250 250 Pfam PF07103 Protein of unknown function (DUF1365) 13 249 2.0E-67 T 10-10-2018 IPR010775 Protein of unknown function DUF1365 VF_1398 0654f89da1eb920f55eb3e12e2e012ce 425 Pfam PF09335 SNARE associated Golgi protein 23 146 9.6E-18 T 10-10-2018 IPR032816 SNARE associated Golgi protein VF_1398 0654f89da1eb920f55eb3e12e2e012ce 425 Pfam PF14067 LssY C-terminus 245 410 3.9E-42 T 10-10-2018 IPR025902 LssY-like C-terminal domain VF_1914 3a78651c415d9a0f18e6336a798d804c 377 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 4 377 52.567 T 10-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 VF_1914 3a78651c415d9a0f18e6336a798d804c 377 Gene3D G3DSA:3.40.630.10 9 364 5.8E-128 T 10-10-2018 VF_1914 3a78651c415d9a0f18e6336a798d804c 377 SUPERFAMILY SSF53187 6 376 6.01E-65 T 10-10-2018 VF_1914 3a78651c415d9a0f18e6336a798d804c 377 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 99 137 - T 10-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VF_1914 3a78651c415d9a0f18e6336a798d804c 377 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 7 375 1.0E-178 T 10-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 VF_1914 3a78651c415d9a0f18e6336a798d804c 377 Gene3D G3DSA:3.30.70.360 181 294 5.8E-128 T 10-10-2018 VF_1914 3a78651c415d9a0f18e6336a798d804c 377 SUPERFAMILY SSF55031 181 290 1.94E-31 T 10-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VF_1914 3a78651c415d9a0f18e6336a798d804c 377 Pfam PF07687 Peptidase dimerisation domain 177 284 9.4E-25 T 10-10-2018 IPR011650 Peptidase M20, dimerisation domain VF_1914 3a78651c415d9a0f18e6336a798d804c 377 Pfam PF01546 Peptidase family M20/M25/M40 65 373 1.8E-44 T 10-10-2018 IPR002933 Peptidase M20 GO:0016787 VF_A1124 413ed2f941b9e7216a19501b055287f8 128 Gene3D G3DSA:2.60.120.10 1 116 2.1E-45 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_A1124 413ed2f941b9e7216a19501b055287f8 128 Hamap MF_01255 L-ectoine synthase [ectC]. 1 128 38.958 T 10-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 VF_A1124 413ed2f941b9e7216a19501b055287f8 128 Pfam PF06339 Ectoine synthase 1 126 2.4E-60 T 10-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 VF_A1124 413ed2f941b9e7216a19501b055287f8 128 ProDom PD080544 SYNTHASE 4.2.1.- LYASE L-ECTOINE DEHYDRATASE N-ACETYLDIAMINOBUTYRATE ECTOINE ENZYME SYNTHASE:ECTOINE ECTC 1 118 1.0E-58 T 10-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 VF_A1124 413ed2f941b9e7216a19501b055287f8 128 SUPERFAMILY SSF51182 10 126 2.97E-24 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_A0872 213ea411a697df8c1436b30caf84666e 484 ProDom PD128112 MEMBRANE OUTER PILUS LIPOPROTEIN BIOSYNTHESIS C TOXIN-COREGULATED TOXIN COFD TCPC 3 482 0.0 T 10-10-2018 VF_0350 1b740395f14327f0d6ff6f456f18222d 195 SUPERFAMILY SSF142984 121 157 4.32E-5 T 10-10-2018 VF_0350 1b740395f14327f0d6ff6f456f18222d 195 Pfam PF10531 SLBB domain 123 167 8.7E-14 T 10-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VF_0350 1b740395f14327f0d6ff6f456f18222d 195 Gene3D G3DSA:3.10.560.10 26 171 9.7E-27 T 10-10-2018 VF_0350 1b740395f14327f0d6ff6f456f18222d 195 Pfam PF02563 Polysaccharide biosynthesis/export protein 45 117 3.4E-19 T 10-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 VF_0350 1b740395f14327f0d6ff6f456f18222d 195 Gene3D G3DSA:3.30.1950.10 50 121 9.7E-27 T 10-10-2018 VF_A0499 b8cae48ad6f4e5141ccdfca94b83b5ce 482 Pfam PF05762 VWA domain containing CoxE-like protein 320 448 1.8E-10 T 10-10-2018 IPR008912 Uncharacterised protein family CoxE-like VF_A0499 b8cae48ad6f4e5141ccdfca94b83b5ce 482 SUPERFAMILY SSF53300 321 472 1.22E-23 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_A0499 b8cae48ad6f4e5141ccdfca94b83b5ce 482 Gene3D G3DSA:3.40.50.410 324 474 1.4E-5 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_0921 148267910e71374617ec31f6e37405cd 194 PIRSF PIRSF000349 1 194 3.0E-84 T 10-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VF_0921 148267910e71374617ec31f6e37405cd 194 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 82 3.0E-34 T 10-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VF_0921 148267910e71374617ec31f6e37405cd 194 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 190 9.0E-39 T 10-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VF_0921 148267910e71374617ec31f6e37405cd 194 SUPERFAMILY SSF46609 1 84 6.81E-35 T 10-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VF_0921 148267910e71374617ec31f6e37405cd 194 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 158 165 - T 10-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VF_0921 148267910e71374617ec31f6e37405cd 194 Gene3D G3DSA:2.40.500.20 83 194 2.1E-42 T 10-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VF_0921 148267910e71374617ec31f6e37405cd 194 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.0E-21 T 10-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VF_0921 148267910e71374617ec31f6e37405cd 194 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.0E-21 T 10-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VF_0921 148267910e71374617ec31f6e37405cd 194 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 4.0E-21 T 10-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VF_0921 148267910e71374617ec31f6e37405cd 194 PRINTS PR01703 Manganese superoxide dismutase signature 156 168 4.0E-21 T 10-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VF_0921 148267910e71374617ec31f6e37405cd 194 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 4.0E-21 T 10-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VF_0921 148267910e71374617ec31f6e37405cd 194 Gene3D G3DSA:1.10.287.990 20 82 7.3E-25 T 10-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VF_0921 148267910e71374617ec31f6e37405cd 194 SUPERFAMILY SSF54719 84 193 1.57E-43 T 10-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VF_1312 acfca130b83a66ca7774178408c4ec95 215 Pfam PF11205 Protein of unknown function (DUF2987) 20 164 4.1E-53 T 10-10-2018 IPR021370 Protein of unknown function DUF2987 VF_A0448 6e1bf21229f949ac3e338e2e96115ee0 542 SUPERFAMILY SSF58104 233 542 8.37E-73 T 10-10-2018 VF_A0448 6e1bf21229f949ac3e338e2e96115ee0 542 Gene3D G3DSA:1.10.287.950 213 542 1.0E-73 T 10-10-2018 VF_A0448 6e1bf21229f949ac3e338e2e96115ee0 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 378 405 2.4E-21 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0448 6e1bf21229f949ac3e338e2e96115ee0 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 190 210 2.4E-21 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0448 6e1bf21229f949ac3e338e2e96115ee0 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 407 436 2.4E-21 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_A0448 6e1bf21229f949ac3e338e2e96115ee0 542 SMART SM00283 280 541 4.4E-68 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0448 6e1bf21229f949ac3e338e2e96115ee0 542 Pfam PF00672 HAMP domain 214 261 6.3E-7 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0448 6e1bf21229f949ac3e338e2e96115ee0 542 SMART SM00304 213 265 6.2E-10 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VF_A0448 6e1bf21229f949ac3e338e2e96115ee0 542 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 343 508 9.4E-45 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A0551 f5568927d213ed31ee4501da59c79ab0 266 Pfam PF00563 EAL domain 30 255 2.5E-39 T 10-10-2018 IPR001633 EAL domain VF_A0551 f5568927d213ed31ee4501da59c79ab0 266 SMART SM00052 7 260 2.4E-11 T 10-10-2018 IPR001633 EAL domain VF_A0551 f5568927d213ed31ee4501da59c79ab0 266 Gene3D G3DSA:3.20.20.450 28 264 3.4E-43 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0551 f5568927d213ed31ee4501da59c79ab0 266 SUPERFAMILY SSF141868 31 260 1.29E-44 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0150 ee4582ca2133a0d34a963d9f68d4e75e 240 Pfam PF01709 Transcriptional regulator 5 236 4.7E-72 T 10-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_A0150 ee4582ca2133a0d34a963d9f68d4e75e 240 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 1 238 27.277 T 10-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_A0150 ee4582ca2133a0d34a963d9f68d4e75e 240 Gene3D G3DSA:1.10.10.200 17 78 1.2E-16 T 10-10-2018 IPR017856 Integrase-like, N-terminal VF_A0150 ee4582ca2133a0d34a963d9f68d4e75e 240 Gene3D G3DSA:3.30.70.980 83 235 2.1E-43 T 10-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_A0150 ee4582ca2133a0d34a963d9f68d4e75e 240 Gene3D G3DSA:3.30.70.980 131 202 2.1E-43 T 10-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_A0150 ee4582ca2133a0d34a963d9f68d4e75e 240 SUPERFAMILY SSF75625 1 240 6.28E-76 T 10-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_A0313 7fd5ed8e317ea07c0a1502c45241bec2 128 Pfam PF04024 PspC domain 3 62 2.2E-18 T 10-10-2018 IPR007168 Phage shock protein, PspC, N-terminal VF_A0313 7fd5ed8e317ea07c0a1502c45241bec2 128 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 2 128 5.2E-49 T 10-10-2018 IPR014320 Phage shock protein, PspC VF_0019 c8382bed7af67f9d5b624aa6d6ed0426 83 Hamap MF_00413 Sulfur carrier protein TusA [tusA]. 3 81 28.645 T 10-10-2018 IPR022931 Sulfur carrier protein TusA GO:0002143|GO:0097163 VF_0019 c8382bed7af67f9d5b624aa6d6ed0426 83 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 10-10-2018 IPR001455 TusA-like domain VF_0019 c8382bed7af67f9d5b624aa6d6ed0426 83 Gene3D G3DSA:3.30.110.40 2 80 2.0E-29 T 10-10-2018 IPR036868 TusA-like domain superfamily VF_0019 c8382bed7af67f9d5b624aa6d6ed0426 83 SUPERFAMILY SSF64307 5 80 4.19E-25 T 10-10-2018 IPR036868 TusA-like domain superfamily VF_0019 c8382bed7af67f9d5b624aa6d6ed0426 83 Pfam PF01206 Sulfurtransferase TusA 11 79 3.7E-23 T 10-10-2018 IPR001455 TusA-like domain VF_A0430 720c8843251b5009aefcef44d5611b41 445 Pfam PF17193 MukF C-terminal domain 288 445 2.4E-77 T 10-10-2018 IPR033441 Chromosome partition protein MukF, C-terminal domain VF_A0430 720c8843251b5009aefcef44d5611b41 445 Gene3D G3DSA:1.10.10.10 29 123 4.3E-44 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0430 720c8843251b5009aefcef44d5611b41 445 SUPERFAMILY SSF140570 124 286 3.27E-78 T 10-10-2018 IPR036141 MukF, middle domain superfamily VF_A0430 720c8843251b5009aefcef44d5611b41 445 SUPERFAMILY SSF46785 13 123 1.36E-44 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0430 720c8843251b5009aefcef44d5611b41 445 Gene3D G3DSA:1.20.58.590 124 316 1.6E-80 T 10-10-2018 IPR036141 MukF, middle domain superfamily VF_A0430 720c8843251b5009aefcef44d5611b41 445 Pfam PF03882 MukF winged-helix domain 9 122 4.6E-56 T 10-10-2018 IPR033439 Chromosome partition protein MukF, winged-helix domain VF_A0430 720c8843251b5009aefcef44d5611b41 445 PIRSF PIRSF018282 1 445 7.7E-239 T 10-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 VF_A0430 720c8843251b5009aefcef44d5611b41 445 Pfam PF17192 MukF middle domain 126 286 3.0E-83 T 10-10-2018 IPR033440 Chromosome partition protein MukF, middle domain VF_A0430 720c8843251b5009aefcef44d5611b41 445 Gene3D G3DSA:1.10.225.40 358 445 7.7E-36 T 10-10-2018 IPR038198 MukF, C-terminal domain superfamily VF_0785 0cea5d5fd515e615316ffd6a421d9341 335 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 41 317 2.2E-52 T 10-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 VF_0785 0cea5d5fd515e615316ffd6a421d9341 335 Gene3D G3DSA:3.40.190.100 117 258 5.0E-139 T 10-10-2018 VF_0785 0cea5d5fd515e615316ffd6a421d9341 335 SUPERFAMILY SSF53850 28 332 2.2E-91 T 10-10-2018 VF_0785 0cea5d5fd515e615316ffd6a421d9341 335 Gene3D G3DSA:3.40.190.10 29 330 5.0E-139 T 10-10-2018 VF_1750 4c8c3eada3df06841428d824e1349ce7 201 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 29 201 7.7E-68 T 10-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 VF_1750 4c8c3eada3df06841428d824e1349ce7 201 PIRSF PIRSF015617 6 201 2.7E-66 T 10-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 VF_1750 4c8c3eada3df06841428d824e1349ce7 201 Gene3D G3DSA:3.40.50.300 11 201 5.3E-71 T 10-10-2018 VF_1750 4c8c3eada3df06841428d824e1349ce7 201 SUPERFAMILY SSF52540 12 201 6.2E-71 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1750 4c8c3eada3df06841428d824e1349ce7 201 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 32 201 1.0E-58 T 10-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 VF_2126 1588371dc698a15d3a9e312925dbdbba 143 Pfam PF07386 Protein of unknown function (DUF1499) 29 134 7.3E-22 T 10-10-2018 IPR010865 Protein of unknown function DUF1499 VF_2126 1588371dc698a15d3a9e312925dbdbba 143 PIRSF PIRSF026426 1 142 9.1E-50 T 10-10-2018 IPR010865 Protein of unknown function DUF1499 VF_1860 aab38bd55826900c38eac75f27351aa3 656 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 421 646 5.8E-53 T 10-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 VF_1860 aab38bd55826900c38eac75f27351aa3 656 Pfam PF07196 Flagellin hook IN motif 125 180 4.3E-6 T 10-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VF_1860 aab38bd55826900c38eac75f27351aa3 656 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 107 9.4E-21 T 10-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 VF_0968 c6d48e31058cefad91d78e2ad1240226 351 SUPERFAMILY SSF56601 39 348 3.32E-83 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VF_0968 c6d48e31058cefad91d78e2ad1240226 351 Gene3D G3DSA:3.40.710.10 35 343 1.6E-87 T 10-10-2018 VF_0968 c6d48e31058cefad91d78e2ad1240226 351 Pfam PF00144 Beta-lactamase 42 335 1.1E-62 T 10-10-2018 IPR001466 Beta-lactamase-related VF_0952 c954ec9db605ab2770cfc3558c78c891 337 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 15 240 1.8E-117 T 10-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 VF_0952 c954ec9db605ab2770cfc3558c78c891 337 Gene3D G3DSA:1.10.10.10 262 337 1.7E-32 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0952 c954ec9db605ab2770cfc3558c78c891 337 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 28 331 2.5E-148 T 10-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 VF_0952 c954ec9db605ab2770cfc3558c78c891 337 Gene3D G3DSA:3.40.50.300 23 186 1.8E-41 T 10-10-2018 VF_0952 c954ec9db605ab2770cfc3558c78c891 337 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 258 331 4.7E-33 T 10-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 VF_0952 c954ec9db605ab2770cfc3558c78c891 337 SUPERFAMILY SSF52540 25 256 8.71E-54 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0952 c954ec9db605ab2770cfc3558c78c891 337 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 337 183.292 T 10-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 VF_0952 c954ec9db605ab2770cfc3558c78c891 337 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 255 332 1.0E-38 T 10-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 VF_0952 c954ec9db605ab2770cfc3558c78c891 337 Gene3D G3DSA:1.10.8.60 187 260 4.8E-31 T 10-10-2018 VF_0952 c954ec9db605ab2770cfc3558c78c891 337 SMART SM00382 56 183 3.4E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0952 c954ec9db605ab2770cfc3558c78c891 337 SUPERFAMILY SSF46785 262 335 7.48E-26 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_2221 8bab41615721ca6d6141f7784e986ff2 130 Gene3D G3DSA:3.30.230.10 1 130 3.2E-53 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_2221 8bab41615721ca6d6141f7784e986ff2 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 10-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 VF_2221 8bab41615721ca6d6141f7784e986ff2 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.552 T 10-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid VF_2221 8bab41615721ca6d6141f7784e986ff2 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 2.9E-45 T 10-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 VF_2221 8bab41615721ca6d6141f7784e986ff2 130 SUPERFAMILY SSF54211 5 130 4.55E-48 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_2120 a251ae7dfee96381962bdfe5fdebfc91 239 SUPERFAMILY SSF46894 137 233 3.12E-20 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_2120 a251ae7dfee96381962bdfe5fdebfc91 239 Gene3D G3DSA:1.10.10.10 122 236 2.6E-25 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2120 a251ae7dfee96381962bdfe5fdebfc91 239 Pfam PF00072 Response regulator receiver domain 6 113 3.5E-28 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_2120 a251ae7dfee96381962bdfe5fdebfc91 239 SMART SM00448 4 114 2.1E-37 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_2120 a251ae7dfee96381962bdfe5fdebfc91 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 8.2E-18 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_2120 a251ae7dfee96381962bdfe5fdebfc91 239 SUPERFAMILY SSF52172 2 130 1.42E-35 T 10-10-2018 IPR011006 CheY-like superfamily VF_2120 a251ae7dfee96381962bdfe5fdebfc91 239 Gene3D G3DSA:3.40.50.2300 2 121 1.8E-32 T 10-10-2018 VF_2120 a251ae7dfee96381962bdfe5fdebfc91 239 SMART SM00862 156 232 1.2E-14 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_1518 f58304867a909084f06eea62eaa53867 938 SUPERFAMILY SSF53067 6 211 9.81E-31 T 10-10-2018 VF_1518 f58304867a909084f06eea62eaa53867 938 Pfam PF12531 DNA-K related protein 690 936 1.2E-100 T 10-10-2018 IPR021030 Protein of unknown function DUF3731 VF_1518 f58304867a909084f06eea62eaa53867 938 Gene3D G3DSA:3.30.420.40 9 211 1.2E-30 T 10-10-2018 VF_1518 f58304867a909084f06eea62eaa53867 938 Pfam PF00012 Hsp70 protein 91 308 2.4E-15 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1518 f58304867a909084f06eea62eaa53867 938 SUPERFAMILY SSF53067 225 462 4.65E-20 T 10-10-2018 VF_1518 f58304867a909084f06eea62eaa53867 938 PRINTS PR00301 70kDa heat shock protein signature 233 243 2.0E-9 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1518 f58304867a909084f06eea62eaa53867 938 PRINTS PR00301 70kDa heat shock protein signature 404 424 2.0E-9 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1518 f58304867a909084f06eea62eaa53867 938 PRINTS PR00301 70kDa heat shock protein signature 7 20 2.0E-9 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1518 f58304867a909084f06eea62eaa53867 938 PRINTS PR00301 70kDa heat shock protein signature 166 186 2.0E-9 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VF_1518 f58304867a909084f06eea62eaa53867 938 Gene3D G3DSA:3.90.640.10 263 342 1.2E-30 T 10-10-2018 VF_1518 f58304867a909084f06eea62eaa53867 938 Gene3D G3DSA:3.30.420.40 212 262 1.2E-30 T 10-10-2018 VF_1566 7ac90f425318194389e70473119d14ec 183 Gene3D G3DSA:1.10.1760.20 1 176 5.7E-17 T 10-10-2018 VF_1566 7ac90f425318194389e70473119d14ec 183 Pfam PF07155 ECF-type riboflavin transporter, S component 3 171 2.5E-41 T 10-10-2018 IPR009825 ECF transporter, substrate-specific component-like GO:0016020 VF_1566 7ac90f425318194389e70473119d14ec 183 Hamap MF_01572 UPF0397 protein . 1 182 20.558 T 10-10-2018 IPR022914 Protein of unknown function UPF0397 VF_0155 47d0b82dd79b5a977881b510603f50a0 214 Gene3D G3DSA:1.10.357.10 1 213 8.1E-69 T 10-10-2018 VF_0155 47d0b82dd79b5a977881b510603f50a0 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 50 2.4E-12 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_0155 47d0b82dd79b5a977881b510603f50a0 214 SUPERFAMILY SSF46689 3 73 3.45E-15 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_0155 47d0b82dd79b5a977881b510603f50a0 214 Pfam PF13972 Bacterial transcriptional repressor 57 202 1.0E-44 T 10-10-2018 IPR025722 Bacterial transcriptional repressor TetR VF_0155 47d0b82dd79b5a977881b510603f50a0 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 2.7E-8 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_0155 47d0b82dd79b5a977881b510603f50a0 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 2.7E-8 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_0801 5daba25138494cf9d6285137c6c101d2 100 Gene3D G3DSA:1.10.150.280 27 100 2.7E-21 T 10-10-2018 VF_0801 5daba25138494cf9d6285137c6c101d2 100 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 37 100 1.0E-25 T 10-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain VF_0801 5daba25138494cf9d6285137c6c101d2 100 Pfam PF12836 Helix-hairpin-helix motif 38 98 2.5E-21 T 10-10-2018 VF_0801 5daba25138494cf9d6285137c6c101d2 100 SUPERFAMILY SSF47781 32 100 1.22E-26 T 10-10-2018 IPR010994 RuvA domain 2-like VF_0663 53493104931c96ca57a39035c350dbcc 297 Gene3D G3DSA:3.20.20.70 1 297 8.0E-107 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0663 53493104931c96ca57a39035c350dbcc 297 SMART SM01130 3 294 2.4E-66 T 10-10-2018 IPR002220 DapA-like GO:0016829 VF_0663 53493104931c96ca57a39035c350dbcc 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 4.0E-7 T 10-10-2018 IPR002220 DapA-like GO:0016829 VF_0663 53493104931c96ca57a39035c350dbcc 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 4.0E-7 T 10-10-2018 IPR002220 DapA-like GO:0016829 VF_0663 53493104931c96ca57a39035c350dbcc 297 SUPERFAMILY SSF51569 1 294 1.78E-70 T 10-10-2018 VF_0663 53493104931c96ca57a39035c350dbcc 297 PIRSF PIRSF001365 1 297 4.1E-66 T 10-10-2018 IPR002220 DapA-like GO:0016829 VF_0663 53493104931c96ca57a39035c350dbcc 297 Pfam PF00701 Dihydrodipicolinate synthetase family 4 289 9.2E-50 T 10-10-2018 IPR002220 DapA-like GO:0016829 VF_0663 53493104931c96ca57a39035c350dbcc 297 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 40 57 - T 10-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VF_0220 7656f5788a2b62c247df79e9516ad5cf 596 Pfam PF00999 Sodium/hydrogen exchanger family 12 369 1.9E-67 T 10-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 VF_0220 7656f5788a2b62c247df79e9516ad5cf 596 Hamap MF_01412 Glutathione-regulated potassium-efflux system protein KefB [kefB]. 1 596 46.408 T 10-10-2018 IPR020884 Glutathione-regulated potassium-efflux system protein KefB GO:0005886|GO:0006813|GO:0015503 VF_0220 7656f5788a2b62c247df79e9516ad5cf 596 Gene3D G3DSA:1.20.1530.20 4 381 1.5E-84 T 10-10-2018 IPR038770 Sodium/solute symporter superfamily VF_0220 7656f5788a2b62c247df79e9516ad5cf 596 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 13 280 7.2E-83 T 10-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 VF_0220 7656f5788a2b62c247df79e9516ad5cf 596 Gene3D G3DSA:3.40.50.720 397 558 3.7E-34 T 10-10-2018 VF_0220 7656f5788a2b62c247df79e9516ad5cf 596 Pfam PF02254 TrkA-N domain 400 511 2.3E-22 T 10-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VF_0220 7656f5788a2b62c247df79e9516ad5cf 596 SUPERFAMILY SSF51735 399 526 9.41E-29 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0953 c887f022c8e1f50a77fa9e8a322e3b39 529 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 8 502 1.2E-176 T 10-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 VF_0953 c887f022c8e1f50a77fa9e8a322e3b39 529 PIRSF PIRSF006446 1 329 5.0E-115 T 10-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 VF_0953 c887f022c8e1f50a77fa9e8a322e3b39 529 PIRSF PIRSF006446 346 527 7.7E-33 T 10-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 VF_2312 0da6328227c16c92321c14382457285f 126 Pfam PF01250 Ribosomal protein S6 3 91 6.1E-28 T 10-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2312 0da6328227c16c92321c14382457285f 126 Gene3D G3DSA:3.30.70.60 1 92 5.6E-32 T 10-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 VF_2312 0da6328227c16c92321c14382457285f 126 SUPERFAMILY SSF54995 1 104 4.45E-38 T 10-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2312 0da6328227c16c92321c14382457285f 126 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.723 T 10-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 VF_2312 0da6328227c16c92321c14382457285f 126 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 2.5E-38 T 10-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2218 beae0291b42a21ed0a23cb1810da4714 422 SUPERFAMILY SSF81648 298 409 7.19E-34 T 10-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 VF_2218 beae0291b42a21ed0a23cb1810da4714 422 SUPERFAMILY SSF81342 6 297 2.04E-92 T 10-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 VF_2218 beae0291b42a21ed0a23cb1810da4714 422 Gene3D G3DSA:1.20.810.10 1 422 4.0E-151 T 10-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 VF_2218 beae0291b42a21ed0a23cb1810da4714 422 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 296 397 1.7E-41 T 10-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 VF_2218 beae0291b42a21ed0a23cb1810da4714 422 Pfam PF00033 Cytochrome b/b6/petB 23 211 1.9E-66 T 10-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 VF_2218 beae0291b42a21ed0a23cb1810da4714 422 PIRSF PIRSF038885 2 422 1.0E-153 T 10-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 VF_2083 5fe1849e279140d86e3cadf39985a485 126 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 3 125 2.8E-33 T 10-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 VF_2083 5fe1849e279140d86e3cadf39985a485 126 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 4 126 27.066 T 10-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 VF_2083 5fe1849e279140d86e3cadf39985a485 126 Gene3D G3DSA:3.90.470.20 1 126 1.2E-40 T 10-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VF_2083 5fe1849e279140d86e3cadf39985a485 126 SUPERFAMILY SSF56214 3 125 3.66E-31 T 10-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VF_2083 5fe1849e279140d86e3cadf39985a485 126 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 5 121 3.5E-22 T 10-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VF_2083 5fe1849e279140d86e3cadf39985a485 126 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 126 3.1E-46 T 10-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 VF_2083 5fe1849e279140d86e3cadf39985a485 126 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 9 87 8.0E-40 T 10-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 VF_2582 16a0d131da69a145eb4f59865a9fbb6a 96 Gene3D G3DSA:3.40.1260.10 2 96 3.5E-20 T 10-10-2018 IPR027396 DsrEFH-like VF_2582 16a0d131da69a145eb4f59865a9fbb6a 96 SUPERFAMILY SSF75169 2 96 2.69E-22 T 10-10-2018 IPR027396 DsrEFH-like VF_2582 16a0d131da69a145eb4f59865a9fbb6a 96 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 3 96 2.6E-17 T 10-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 VF_2582 16a0d131da69a145eb4f59865a9fbb6a 96 Pfam PF04077 DsrH like protein 23 90 1.2E-17 T 10-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 VF_A0222 6be52623f2b0878d3d5311fc59214988 405 Gene3D G3DSA:3.40.50.300 147 384 9.3E-24 T 10-10-2018 VF_A0222 6be52623f2b0878d3d5311fc59214988 405 Gene3D G3DSA:3.40.50.2300 6 140 3.4E-9 T 10-10-2018 VF_A0222 6be52623f2b0878d3d5311fc59214988 405 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 150 213 1.3E-6 T 10-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 VF_A0222 6be52623f2b0878d3d5311fc59214988 405 SUPERFAMILY SSF52540 148 372 5.91E-21 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0887 3e95fbbbd5ea8b5c0616c6093767b9c5 382 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 5 380 23.385 T 10-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 VF_0887 3e95fbbbd5ea8b5c0616c6093767b9c5 382 Gene3D G3DSA:1.20.1530.10 3 381 1.9E-146 T 10-10-2018 IPR023171 Na/H antiporter domain superfamily VF_0887 3e95fbbbd5ea8b5c0616c6093767b9c5 382 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 8 373 2.9E-178 T 10-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 VF_0887 3e95fbbbd5ea8b5c0616c6093767b9c5 382 Pfam PF06965 Na+/H+ antiporter 1 7 373 1.1E-142 T 10-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 VF_1521 f51a38537a6abc4480a1e978fe008666 252 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 65 80 - T 10-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_1521 f51a38537a6abc4480a1e978fe008666 252 SUPERFAMILY SSF53167 5 248 3.27E-73 T 10-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VF_1521 f51a38537a6abc4480a1e978fe008666 252 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 5 252 1.3E-109 T 10-10-2018 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3|MetaCyc: PWY-5532 VF_1521 f51a38537a6abc4480a1e978fe008666 252 Pfam PF01048 Phosphorylase superfamily 20 242 1.7E-40 T 10-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VF_1521 f51a38537a6abc4480a1e978fe008666 252 Gene3D G3DSA:3.40.50.1580 2 252 3.4E-81 T 10-10-2018 VF_1501 94671616bd9a8e5bfe4c11e1eeda3e0e 108 SUPERFAMILY SSF69721 2 108 1.57E-41 T 10-10-2018 IPR025526 DsrC-like domain superfamily VF_1501 94671616bd9a8e5bfe4c11e1eeda3e0e 108 PIRSF PIRSF006223 1 108 1.8E-43 T 10-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE VF_1501 94671616bd9a8e5bfe4c11e1eeda3e0e 108 Pfam PF04358 DsrC like protein 2 108 1.3E-44 T 10-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE VF_1501 94671616bd9a8e5bfe4c11e1eeda3e0e 108 Gene3D G3DSA:1.10.10.370 38 108 4.2E-31 T 10-10-2018 VF_1501 94671616bd9a8e5bfe4c11e1eeda3e0e 108 Gene3D G3DSA:3.30.1420.10 1 37 6.9E-14 T 10-10-2018 VF_1501 94671616bd9a8e5bfe4c11e1eeda3e0e 108 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 1 108 4.0E-50 T 10-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 SUPERFAMILY SSF48029 21 134 1.52E-19 T 10-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 PRINTS PR00954 Flagellar motor switch protein FliG signature 244 264 1.8E-56 T 10-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 PRINTS PR00954 Flagellar motor switch protein FliG signature 213 238 1.8E-56 T 10-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 PRINTS PR00954 Flagellar motor switch protein FliG signature 266 286 1.8E-56 T 10-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 PRINTS PR00954 Flagellar motor switch protein FliG signature 23 39 1.8E-56 T 10-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 PRINTS PR00954 Flagellar motor switch protein FliG signature 52 78 1.8E-56 T 10-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 PRINTS PR00954 Flagellar motor switch protein FliG signature 132 155 1.8E-56 T 10-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 PRINTS PR00954 Flagellar motor switch protein FliG signature 290 316 1.8E-56 T 10-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 19 348 3.5E-95 T 10-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 Pfam PF14842 FliG N-terminal domain 23 123 4.4E-27 T 10-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 Gene3D G3DSA:1.10.220.30 213 350 5.2E-40 T 10-10-2018 VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 Gene3D G3DSA:1.10.220.30 107 211 3.4E-30 T 10-10-2018 VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 Pfam PF14841 FliG middle domain 133 205 4.4E-27 T 10-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 SUPERFAMILY SSF48029 132 343 3.01E-66 T 10-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 PIRSF PIRSF003161 17 350 2.2E-112 T 10-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 Gene3D G3DSA:1.10.220.30 19 101 3.1E-16 T 10-10-2018 VF_1851 2ca3290f9d50d8854af82e979c1e72f2 350 Pfam PF01706 FliG C-terminal domain 236 342 1.4E-38 T 10-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal VF_A0326 5443f6063b2240430d4fc3f4e12d5ff5 232 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 172 2.9E-16 T 10-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase VF_A0523 6270f40f1ec21f98494083891012641a 63 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 1 51 4.7E-25 T 10-10-2018 IPR010260 DNA-binding transcriptional activator AlpA VF_A0523 6270f40f1ec21f98494083891012641a 63 SUPERFAMILY SSF46955 2 54 8.61E-5 T 10-10-2018 IPR009061 Putative DNA-binding domain superfamily VF_2205 77acaaf221a64de42f818fe9ee5f6456 452 SUPERFAMILY SSF53623 102 311 8.11E-54 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VF_2205 77acaaf221a64de42f818fe9ee5f6456 452 Pfam PF08245 Mur ligase middle domain 106 294 6.8E-49 T 10-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VF_2205 77acaaf221a64de42f818fe9ee5f6456 452 Pfam PF01225 Mur ligase family, catalytic domain 24 78 4.0E-8 T 10-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 VF_2205 77acaaf221a64de42f818fe9ee5f6456 452 Pfam PF02875 Mur ligase family, glutamate ligase domain 314 394 6.6E-13 T 10-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VF_2205 77acaaf221a64de42f818fe9ee5f6456 452 SUPERFAMILY SSF63418 1 95 4.97E-26 T 10-10-2018 IPR035911 MurE/MurF, N-terminal VF_2205 77acaaf221a64de42f818fe9ee5f6456 452 SUPERFAMILY SSF53244 314 448 1.8E-33 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VF_2205 77acaaf221a64de42f818fe9ee5f6456 452 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 449 33.984 T 10-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_2205 77acaaf221a64de42f818fe9ee5f6456 452 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 29 448 1.7E-140 T 10-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_2205 77acaaf221a64de42f818fe9ee5f6456 452 Gene3D G3DSA:3.90.190.20 313 452 2.2E-36 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VF_2205 77acaaf221a64de42f818fe9ee5f6456 452 Gene3D G3DSA:3.40.1190.10 81 311 1.1E-73 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VF_2205 77acaaf221a64de42f818fe9ee5f6456 452 Gene3D G3DSA:3.40.1390.10 1 80 2.0E-26 T 10-10-2018 VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 5.2E-21 T 10-10-2018 VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 5.2E-21 T 10-10-2018 VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 231 247 5.2E-21 T 10-10-2018 VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 5.2E-21 T 10-10-2018 VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 5.2E-21 T 10-10-2018 VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 Gene3D G3DSA:3.50.50.60 7 279 1.9E-76 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 Gene3D G3DSA:3.30.390.120 316 378 7.4E-7 T 10-10-2018 VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 Gene3D G3DSA:3.50.50.60 109 243 1.9E-76 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 SUPERFAMILY SSF51905 3 304 2.93E-36 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 281 3.3E-52 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 Hamap MF_01313 Nitric oxide reductase FlRd-NAD(+) reductase [norW]. 2 380 55.967 T 10-10-2018 IPR023961 Nitric oxide reductase FlRd-NAD(+) reductase GO:0016731|GO:0055114 VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 232 246 3.4E-14 T 10-10-2018 VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 3.4E-14 T 10-10-2018 VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 278 3.4E-14 T 10-10-2018 VF_1781 036ee59a46b0fd300ee9e47c47d2e65d 382 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 171 3.4E-14 T 10-10-2018 VF_1705 4e29aa1d44a09045acb7c539a74bd4fb 270 Pfam PF13614 AAA domain 3 171 4.4E-20 T 10-10-2018 IPR025669 AAA domain VF_1705 4e29aa1d44a09045acb7c539a74bd4fb 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 1.1E-107 T 10-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 VF_1705 4e29aa1d44a09045acb7c539a74bd4fb 270 SUPERFAMILY SSF52540 1 268 2.02E-51 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1705 4e29aa1d44a09045acb7c539a74bd4fb 270 Gene3D G3DSA:3.40.50.300 1 260 2.9E-71 T 10-10-2018 VF_1705 4e29aa1d44a09045acb7c539a74bd4fb 270 PIRSF PIRSF003092 1 270 3.8E-91 T 10-10-2018 IPR025501 ATP binding protein MinD VF_A0118 ab2c0098d16668b54ab770fdbba1d7f8 367 Gene3D G3DSA:3.20.20.70 1 365 3.1E-141 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A0118 ab2c0098d16668b54ab770fdbba1d7f8 367 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 340 2.3E-99 T 10-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 VF_A0118 ab2c0098d16668b54ab770fdbba1d7f8 367 SUPERFAMILY SSF51395 3 365 9.16E-124 T 10-10-2018 VF_A0478 cce9c0d1f149f3657328fd09a003639c 437 Gene3D G3DSA:3.90.550.10 48 281 6.3E-32 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_A0478 cce9c0d1f149f3657328fd09a003639c 437 Pfam PF13641 Glycosyltransferase like family 2 60 293 2.2E-19 T 10-10-2018 VF_A0478 cce9c0d1f149f3657328fd09a003639c 437 SUPERFAMILY SSF53448 53 342 4.36E-39 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0530 530b79ecdcadd5d954b1e06858d2f2ce 80 Pfam PF09905 DNA-binding protein VF530 8 70 3.1E-36 T 10-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 VF_0530 530b79ecdcadd5d954b1e06858d2f2ce 80 Gene3D G3DSA:1.10.720.30 16 75 2.6E-33 T 10-10-2018 IPR036361 SAP domain superfamily VF_A0939 ca46542d520e631bde3341fd0f7dae99 174 Gene3D G3DSA:2.40.160.20 10 174 1.7E-16 T 10-10-2018 VF_A0939 ca46542d520e631bde3341fd0f7dae99 174 Pfam PF13505 Outer membrane protein beta-barrel domain 7 174 1.4E-12 T 10-10-2018 IPR027385 Outer membrane protein beta-barrel VF_A0939 ca46542d520e631bde3341fd0f7dae99 174 SUPERFAMILY SSF56925 30 174 2.09E-16 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VF_0401 8bce40afa4909c087233e7a329a605d8 422 SUPERFAMILY SSF55205 9 418 1.8E-141 T 10-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 VF_0401 8bce40afa4909c087233e7a329a605d8 422 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 11 407 1.1E-122 T 10-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 VF_0401 8bce40afa4909c087233e7a329a605d8 422 Gene3D G3DSA:3.65.10.10 22 229 1.6E-173 T 10-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 VF_0401 8bce40afa4909c087233e7a329a605d8 422 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 416 1.3E-180 T 10-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_0401 8bce40afa4909c087233e7a329a605d8 422 Gene3D G3DSA:3.65.10.10 12 414 1.6E-173 T 10-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 VF_0401 8bce40afa4909c087233e7a329a605d8 422 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 43.639 T 10-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VF_1311 04b09bebff713722e3c63db4b9083583 307 PIRSF PIRSF004976 2 268 6.9E-75 T 10-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 VF_1311 04b09bebff713722e3c63db4b9083583 307 Gene3D G3DSA:3.40.50.620 2 264 4.4E-51 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_1311 04b09bebff713722e3c63db4b9083583 307 Pfam PF01171 PP-loop family 39 200 8.9E-16 T 10-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 VF_1311 04b09bebff713722e3c63db4b9083583 307 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 7 266 57.053 T 10-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 VF_1311 04b09bebff713722e3c63db4b9083583 307 SUPERFAMILY SSF52402 14 233 1.9E-56 T 10-10-2018 VF_A0733 2d4e13b825d19dee52af5ed30bd73269 350 Gene3D G3DSA:3.30.565.10 204 341 7.2E-14 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0733 2d4e13b825d19dee52af5ed30bd73269 350 SUPERFAMILY SSF55874 207 338 1.18E-12 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0733 2d4e13b825d19dee52af5ed30bd73269 350 Pfam PF06580 Histidine kinase 151 229 7.2E-25 T 10-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 VF_0815 1e5b7211a7932d0616670d86b906fea7 180 SUPERFAMILY SSF47598 1 33 8.89E-13 T 10-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 VF_0815 1e5b7211a7932d0616670d86b906fea7 180 SUPERFAMILY SSF82808 66 179 1.44E-45 T 10-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 VF_0815 1e5b7211a7932d0616670d86b906fea7 180 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 1 180 40.007 T 10-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 VF_0815 1e5b7211a7932d0616670d86b906fea7 180 Gene3D G3DSA:1.20.1380.10 65 180 1.7E-44 T 10-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 VF_0815 1e5b7211a7932d0616670d86b906fea7 180 Pfam PF17206 SeqA protein N-terminal domain 1 33 4.7E-23 T 10-10-2018 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal VF_0815 1e5b7211a7932d0616670d86b906fea7 180 Gene3D G3DSA:1.10.1220.10 1 40 9.3E-24 T 10-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 VF_0815 1e5b7211a7932d0616670d86b906fea7 180 PIRSF PIRSF019401 1 180 1.5E-51 T 10-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 VF_0815 1e5b7211a7932d0616670d86b906fea7 180 Pfam PF03925 SeqA protein C-terminal domain 71 178 1.5E-43 T 10-10-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 VF_A0825 71e850bc341769bfa5c5063a1b33ad44 316 Gene3D G3DSA:1.10.3470.10 2 316 7.0E-57 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_A0825 71e850bc341769bfa5c5063a1b33ad44 316 Pfam PF01032 FecCD transport family 24 312 1.9E-54 T 10-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VF_A0825 71e850bc341769bfa5c5063a1b33ad44 316 SUPERFAMILY SSF81345 7 312 2.75E-59 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_0420 33227fb76959ef46bd642a8c4e1d8735 362 Pfam PF01464 Transglycosylase SLT domain 212 337 3.7E-28 T 10-10-2018 IPR008258 Transglycosylase SLT domain 1 VF_0420 33227fb76959ef46bd642a8c4e1d8735 362 SUPERFAMILY SSF53955 207 332 1.13E-31 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_0420 33227fb76959ef46bd642a8c4e1d8735 362 Gene3D G3DSA:1.10.530.10 191 359 2.2E-43 T 10-10-2018 VF_0420 33227fb76959ef46bd642a8c4e1d8735 362 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 229 257 - T 10-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 VF_0420 33227fb76959ef46bd642a8c4e1d8735 362 Pfam PF11873 Domain of unknown function (DUF3393) 3 207 1.6E-78 T 10-10-2018 IPR024570 Murein transglycosylase-C, N-terminal VF_1611 57428a392345f85960b2e891b7535566 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 305 3.2E-22 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_1611 57428a392345f85960b2e891b7535566 308 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 31 305 1.3E-90 T 10-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 VF_1611 57428a392345f85960b2e891b7535566 308 Gene3D G3DSA:1.10.3720.10 79 308 5.7E-33 T 10-10-2018 IPR035906 MetI-like superfamily VF_1611 57428a392345f85960b2e891b7535566 308 SUPERFAMILY SSF161098 32 302 4.14E-36 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0795 f4287c2556223e3f671f2ea8f354c2ab 331 SUPERFAMILY SSF52172 1 116 1.57E-28 T 10-10-2018 IPR011006 CheY-like superfamily VF_A0795 f4287c2556223e3f671f2ea8f354c2ab 331 Gene3D G3DSA:3.40.1550.10 139 329 8.9E-26 T 10-10-2018 IPR028976 CheC-like superfamily VF_A0795 f4287c2556223e3f671f2ea8f354c2ab 331 SMART SM00448 1 113 3.7E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0795 f4287c2556223e3f671f2ea8f354c2ab 331 SUPERFAMILY SSF103039 141 328 3.14E-29 T 10-10-2018 IPR028976 CheC-like superfamily VF_A0795 f4287c2556223e3f671f2ea8f354c2ab 331 Pfam PF00072 Response regulator receiver domain 3 112 4.0E-26 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_A0795 f4287c2556223e3f671f2ea8f354c2ab 331 Gene3D G3DSA:3.40.50.2300 1 120 1.2E-29 T 10-10-2018 VF_A0699 82b1b46d0c3e4f2c21ef0453cbfdd18b 227 Gene3D G3DSA:3.10.129.10 75 226 5.0E-38 T 10-10-2018 VF_A0699 82b1b46d0c3e4f2c21ef0453cbfdd18b 227 SUPERFAMILY SSF54637 78 222 1.16E-29 T 10-10-2018 IPR029069 HotDog domain superfamily VF_A0699 82b1b46d0c3e4f2c21ef0453cbfdd18b 227 Pfam PF01575 MaoC like domain 85 207 7.5E-23 T 10-10-2018 IPR002539 MaoC-like dehydratase domain VF_A0784 2812f4a39b9d97035d944f03faa0d79c 732 Gene3D G3DSA:2.40.170.20 173 732 5.8E-131 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VF_A0784 2812f4a39b9d97035d944f03faa0d79c 732 Pfam PF00593 TonB dependent receptor 245 731 5.1E-53 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VF_A0784 2812f4a39b9d97035d944f03faa0d79c 732 Gene3D G3DSA:2.170.130.10 45 172 5.8E-33 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VF_A0784 2812f4a39b9d97035d944f03faa0d79c 732 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 63 732 5.3E-115 T 10-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 VF_A0784 2812f4a39b9d97035d944f03faa0d79c 732 Pfam PF07715 TonB-dependent Receptor Plug Domain 62 164 3.5E-18 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain VF_A0784 2812f4a39b9d97035d944f03faa0d79c 732 SUPERFAMILY SSF56935 30 732 5.5E-131 T 10-10-2018 VF_A0192 15baed9a9f2cd6a4997ee3178a628b60 255 Pfam PF11932 Protein of unknown function (DUF3450) 9 248 1.6E-84 T 10-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 VF_A0192 15baed9a9f2cd6a4997ee3178a628b60 255 PIRSF PIRSF028069 1 255 1.6E-110 T 10-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 VF_0138 fb8cb8f25a0c595e3927dcf3043724fe 418 SUPERFAMILY SSF53756 55 412 1.15E-18 T 10-10-2018 VF_0138 fb8cb8f25a0c595e3927dcf3043724fe 418 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 34 211 2.5E-59 T 10-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 VF_0138 fb8cb8f25a0c595e3927dcf3043724fe 418 Pfam PF00534 Glycosyl transferases group 1 232 401 6.4E-11 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 VF_0138 fb8cb8f25a0c595e3927dcf3043724fe 418 Gene3D G3DSA:3.40.50.2000 215 406 1.0E-61 T 10-10-2018 VF_0138 fb8cb8f25a0c595e3927dcf3043724fe 418 Gene3D G3DSA:3.40.50.11720 33 209 1.4E-45 T 10-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 VF_1801 a0efdd65b36f0157360b360fce42eb76 86 Pfam PF08891 YfcL protein 4 84 3.6E-33 T 10-10-2018 IPR014987 Uncharacterised protein family YfcL VF_A1103 ec2dee9508ce4043161010463937a1c6 336 Gene3D G3DSA:1.10.287.470 104 172 4.6E-7 T 10-10-2018 VF_A1103 ec2dee9508ce4043161010463937a1c6 336 Gene3D G3DSA:1.10.287.470 80 103 1.8E-9 T 10-10-2018 VF_A1103 ec2dee9508ce4043161010463937a1c6 336 SUPERFAMILY SSF111369 44 167 4.58E-11 T 10-10-2018 VF_A1103 ec2dee9508ce4043161010463937a1c6 336 Gene3D G3DSA:2.40.30.170 219 334 8.0E-34 T 10-10-2018 VF_A1103 ec2dee9508ce4043161010463937a1c6 336 SUPERFAMILY SSF111369 181 253 6.41E-11 T 10-10-2018 VF_A1103 ec2dee9508ce4043161010463937a1c6 336 Gene3D G3DSA:2.40.50.100 46 79 1.8E-9 T 10-10-2018 VF_A1103 ec2dee9508ce4043161010463937a1c6 336 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 44 278 7.6E-16 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VF_0361 f3f231aa8e9a115883f08fc046751aea 381 Gene3D G3DSA:1.25.40.10 290 363 5.9E-7 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0361 f3f231aa8e9a115883f08fc046751aea 381 SUPERFAMILY SSF48452 200 351 1.44E-13 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0361 f3f231aa8e9a115883f08fc046751aea 381 Gene3D G3DSA:1.25.40.10 160 288 4.4E-11 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0361 f3f231aa8e9a115883f08fc046751aea 381 SMART SM00028 293 326 48.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0361 f3f231aa8e9a115883f08fc046751aea 381 SMART SM00028 327 360 83.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0361 f3f231aa8e9a115883f08fc046751aea 381 SMART SM00028 227 260 20.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A1142 717c73e1c7521c6fd2c1f892ea6d573a 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.0E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1142 717c73e1c7521c6fd2c1f892ea6d573a 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.0E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1142 717c73e1c7521c6fd2c1f892ea6d573a 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.0E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1142 717c73e1c7521c6fd2c1f892ea6d573a 295 SUPERFAMILY SSF46785 3 86 2.25E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A1142 717c73e1c7521c6fd2c1f892ea6d573a 295 Gene3D G3DSA:3.40.190.290 93 294 2.2E-46 T 10-10-2018 VF_A1142 717c73e1c7521c6fd2c1f892ea6d573a 295 Pfam PF03466 LysR substrate binding domain 89 289 2.0E-21 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A1142 717c73e1c7521c6fd2c1f892ea6d573a 295 SUPERFAMILY SSF53850 93 292 3.86E-26 T 10-10-2018 VF_A1142 717c73e1c7521c6fd2c1f892ea6d573a 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 5.8E-18 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1142 717c73e1c7521c6fd2c1f892ea6d573a 295 Gene3D G3DSA:1.10.10.10 2 85 7.1E-22 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_0128 abf6d1b5820fa320ae3d5f2ab80d899f 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 15.066 T 10-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0128 abf6d1b5820fa320ae3d5f2ab80d899f 55 SUPERFAMILY SSF57829 1 53 3.24E-20 T 10-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 VF_0128 abf6d1b5820fa320ae3d5f2ab80d899f 55 Pfam PF00471 Ribosomal protein L33 7 53 2.3E-18 T 10-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0128 abf6d1b5820fa320ae3d5f2ab80d899f 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 10-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0128 abf6d1b5820fa320ae3d5f2ab80d899f 55 Gene3D G3DSA:2.20.28.120 1 55 6.1E-30 T 10-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0128 abf6d1b5820fa320ae3d5f2ab80d899f 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 9.0E-26 T 10-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_A0508 eeb6f502599956ca61d43cebb81e9e21 331 Pfam PF11557 Solitary outer membrane autotransporter beta-barrel domain 1 331 7.4E-151 T 10-10-2018 IPR021621 Solitary outer membrane autotransporter beta-barrel domain VF_2447 f4eb68563de923a43262f01ae3dc09c8 280 Gene3D G3DSA:1.20.1540.10 90 280 1.8E-50 T 10-10-2018 IPR035952 Rhomboid-like superfamily VF_2447 f4eb68563de923a43262f01ae3dc09c8 280 Pfam PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease 1 87 2.2E-31 T 10-10-2018 IPR022732 Peptidase S54, GlpG peptidase, N-terminal GO:0004252|GO:0016021 VF_2447 f4eb68563de923a43262f01ae3dc09c8 280 Gene3D G3DSA:3.30.70.2350 1 71 4.1E-20 T 10-10-2018 IPR038236 GlpG peptidase, N-terminal domain superfamily VF_2447 f4eb68563de923a43262f01ae3dc09c8 280 TIGRFAM TIGR04239 rhombo_GlpG: rhomboid family protease GlpG 3 273 2.2E-117 T 10-10-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 VF_2447 f4eb68563de923a43262f01ae3dc09c8 280 Pfam PF01694 Rhomboid family 135 274 1.4E-28 T 10-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 VF_2447 f4eb68563de923a43262f01ae3dc09c8 280 SUPERFAMILY SSF144091 98 276 3.4E-39 T 10-10-2018 VF_A0115 1efb6db72c6efbcf89d37b3135d867a3 178 SUPERFAMILY SSF55729 1 138 2.58E-24 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A0115 1efb6db72c6efbcf89d37b3135d867a3 178 Pfam PF13508 Acetyltransferase (GNAT) domain 52 130 2.7E-12 T 10-10-2018 IPR000182 GNAT domain VF_A0115 1efb6db72c6efbcf89d37b3135d867a3 178 Gene3D G3DSA:3.40.630.30 4 176 8.7E-28 T 10-10-2018 VF_A1039 cba54bd85f00b94a9b5113eb31025608 187 Pfam PF07209 Protein of unknown function (DUF1415) 11 178 7.9E-68 T 10-10-2018 IPR009858 Protein of unknown function DUF1415 VF_A0212 23cfdd7f80943c82be0d1d0ee4c762ea 474 SMART SM00387 361 474 2.4E-10 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0212 23cfdd7f80943c82be0d1d0ee4c762ea 474 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 365 473 7.5E-9 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_A0212 23cfdd7f80943c82be0d1d0ee4c762ea 474 SUPERFAMILY SSF47384 234 313 6.87E-9 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_A0212 23cfdd7f80943c82be0d1d0ee4c762ea 474 Gene3D G3DSA:1.10.287.130 203 315 3.2E-9 T 10-10-2018 VF_A0212 23cfdd7f80943c82be0d1d0ee4c762ea 474 SUPERFAMILY SSF55874 319 472 1.18E-20 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_A0212 23cfdd7f80943c82be0d1d0ee4c762ea 474 Gene3D G3DSA:3.30.565.10 319 474 1.1E-20 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_1482 8fc1790c2239074e18a5ee37a9e12ff3 474 SMART SM00479 8 201 0.0014 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_1482 8fc1790c2239074e18a5ee37a9e12ff3 474 PIRSF PIRSF000977 1 474 3.6E-196 T 10-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 VF_1482 8fc1790c2239074e18a5ee37a9e12ff3 474 Pfam PF08411 Exonuclease C-terminal 210 471 2.2E-98 T 10-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 VF_1482 8fc1790c2239074e18a5ee37a9e12ff3 474 SUPERFAMILY SSF53098 8 472 6.58E-135 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_1482 8fc1790c2239074e18a5ee37a9e12ff3 474 Pfam PF00929 Exonuclease 11 191 6.1E-26 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_1482 8fc1790c2239074e18a5ee37a9e12ff3 474 Gene3D G3DSA:1.20.1280.70 358 419 2.3E-23 T 10-10-2018 VF_1482 8fc1790c2239074e18a5ee37a9e12ff3 474 Gene3D G3DSA:3.30.420.10 2 199 9.0E-73 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_1482 8fc1790c2239074e18a5ee37a9e12ff3 474 Gene3D G3DSA:2.30.30.450 212 351 6.3E-54 T 10-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily VF_1902 800a9a1e7b615c22a6de3325dfc9006a 43 Pfam PF09574 Protein of unknown function (Duf2374) 1 42 5.0E-27 T 10-10-2018 IPR014175 Conserved hypothetical protein CHP02808 VF_1902 800a9a1e7b615c22a6de3325dfc9006a 43 TIGRFAM TIGR02808 short_TIGR02808: TIGR02808 family protein 1 42 3.8E-29 T 10-10-2018 IPR014175 Conserved hypothetical protein CHP02808 VF_A0954 5f5cdcd847a45b12c0fdd8e24bacc7c6 172 Gene3D G3DSA:2.30.110.20 2 172 1.8E-74 T 10-10-2018 IPR036624 Hcp1-like superfamily VF_A0954 5f5cdcd847a45b12c0fdd8e24bacc7c6 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 168 4.3E-68 T 10-10-2018 IPR008514 Type VI secretion system effector, Hcp VF_A0954 5f5cdcd847a45b12c0fdd8e24bacc7c6 172 SUPERFAMILY SSF141452 3 168 6.28E-45 T 10-10-2018 IPR036624 Hcp1-like superfamily VF_A0954 5f5cdcd847a45b12c0fdd8e24bacc7c6 172 Pfam PF05638 Type VI secretion system effector, Hcp 6 155 1.5E-34 T 10-10-2018 IPR008514 Type VI secretion system effector, Hcp VF_0766 77a14f317a743e8b853e5655f15b7bc9 208 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 10 206 23.771 T 10-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 VF_0766 77a14f317a743e8b853e5655f15b7bc9 208 Gene3D G3DSA:2.50.20.10 32 207 8.4E-51 T 10-10-2018 VF_0766 77a14f317a743e8b853e5655f15b7bc9 208 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 15 205 6.8E-39 T 10-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 VF_0766 77a14f317a743e8b853e5655f15b7bc9 208 Pfam PF03550 Outer membrane lipoprotein LolB 52 204 2.7E-41 T 10-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 VF_0766 77a14f317a743e8b853e5655f15b7bc9 208 SUPERFAMILY SSF89392 26 206 1.41E-51 T 10-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX VF_A0408 ba1496d003e3d15e2e7ea5198af160f0 175 Gene3D G3DSA:3.90.79.10 12 150 2.0E-24 T 10-10-2018 VF_A0408 ba1496d003e3d15e2e7ea5198af160f0 175 Pfam PF00293 NUDIX domain 24 140 2.0E-13 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VF_A0408 ba1496d003e3d15e2e7ea5198af160f0 175 SUPERFAMILY SSF55811 19 142 2.03E-20 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VF_A0408 ba1496d003e3d15e2e7ea5198af160f0 175 ProSitePatterns PS00893 Nudix box signature. 52 73 - T 10-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VF_1958 6c7763cc7d7275fba30e9e36e13f243e 257 SUPERFAMILY SSF64005 10 237 1.31E-87 T 10-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 VF_1958 6c7763cc7d7275fba30e9e36e13f243e 257 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 15 242 1.2E-94 T 10-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 VF_1958 6c7763cc7d7275fba30e9e36e13f243e 257 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 15 243 39.551 T 10-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 VF_1958 6c7763cc7d7275fba30e9e36e13f243e 257 Gene3D G3DSA:3.40.1180.10 1 243 2.9E-94 T 10-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 VF_1958 6c7763cc7d7275fba30e9e36e13f243e 257 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 188 205 - T 10-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 VF_1958 6c7763cc7d7275fba30e9e36e13f243e 257 Pfam PF01255 Putative undecaprenyl diphosphate synthase 22 242 3.9E-81 T 10-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 VF_1104 7d5ecabfb6fdbb279810f31d4068d80b 258 Pfam PF17131 Outer membrane lipoprotein-sorting protein 75 254 8.0E-53 T 10-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein VF_1104 7d5ecabfb6fdbb279810f31d4068d80b 258 Gene3D G3DSA:2.50.20.10 23 254 8.6E-58 T 10-10-2018 VF_A0803 c5409ad6099173bf1b37f53d485246cd 413 PRINTS PR00173 Glutamate-aspartate symporter signature 8 28 1.1E-15 T 10-10-2018 VF_A0803 c5409ad6099173bf1b37f53d485246cd 413 PRINTS PR00173 Glutamate-aspartate symporter signature 221 240 1.1E-15 T 10-10-2018 VF_A0803 c5409ad6099173bf1b37f53d485246cd 413 PRINTS PR00173 Glutamate-aspartate symporter signature 323 342 1.1E-15 T 10-10-2018 VF_A0803 c5409ad6099173bf1b37f53d485246cd 413 PRINTS PR00173 Glutamate-aspartate symporter signature 186 205 1.1E-15 T 10-10-2018 VF_A0803 c5409ad6099173bf1b37f53d485246cd 413 PRINTS PR00173 Glutamate-aspartate symporter signature 42 67 1.1E-15 T 10-10-2018 VF_A0803 c5409ad6099173bf1b37f53d485246cd 413 PRINTS PR00173 Glutamate-aspartate symporter signature 288 314 1.1E-15 T 10-10-2018 VF_A0803 c5409ad6099173bf1b37f53d485246cd 413 Pfam PF00375 Sodium:dicarboxylate symporter family 17 396 2.4E-60 T 10-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VF_A0803 c5409ad6099173bf1b37f53d485246cd 413 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 4 405 36.18 T 10-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 VF_A0803 c5409ad6099173bf1b37f53d485246cd 413 SUPERFAMILY SSF118215 17 398 3.01E-91 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VF_A0803 c5409ad6099173bf1b37f53d485246cd 413 Gene3D G3DSA:1.10.3860.10 4 406 2.9E-68 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VF_1218 901e89c6359d385c4e4ab923ee349d0b 117 Pfam PF00453 Ribosomal protein L20 3 109 2.9E-48 T 10-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1218 901e89c6359d385c4e4ab923ee349d0b 117 SUPERFAMILY SSF74731 2 116 1.44E-49 T 10-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1218 901e89c6359d385c4e4ab923ee349d0b 117 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 10-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1218 901e89c6359d385c4e4ab923ee349d0b 117 Gene3D G3DSA:1.10.720.90 2 55 6.1E-25 T 10-10-2018 VF_1218 901e89c6359d385c4e4ab923ee349d0b 117 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 30.067 T 10-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1218 901e89c6359d385c4e4ab923ee349d0b 117 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 3.2E-51 T 10-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1218 901e89c6359d385c4e4ab923ee349d0b 117 Gene3D G3DSA:1.10.1900.20 56 117 8.7E-28 T 10-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1218 901e89c6359d385c4e4ab923ee349d0b 117 PRINTS PR00062 Ribosomal protein L20 signature 12 41 6.0E-42 T 10-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1218 901e89c6359d385c4e4ab923ee349d0b 117 PRINTS PR00062 Ribosomal protein L20 signature 42 71 6.0E-42 T 10-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1218 901e89c6359d385c4e4ab923ee349d0b 117 PRINTS PR00062 Ribosomal protein L20 signature 75 101 6.0E-42 T 10-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1218 901e89c6359d385c4e4ab923ee349d0b 117 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 2.0E-22 T 10-10-2018 VF_0555 d455b656dbc64a7ea159c781fa5b1d09 337 Pfam PF01551 Peptidase family M23 175 270 1.5E-31 T 10-10-2018 IPR016047 Peptidase M23 VF_0555 d455b656dbc64a7ea159c781fa5b1d09 337 SUPERFAMILY SSF51261 63 274 7.46E-55 T 10-10-2018 IPR011055 Duplicated hybrid motif VF_0555 d455b656dbc64a7ea159c781fa5b1d09 337 Gene3D G3DSA:2.70.70.10 117 277 1.3E-42 T 10-10-2018 IPR011055 Duplicated hybrid motif VF_1883 167194ddef34d3af940c8ffe113c7393 143 Pfam PF02169 LPP20 lipoprotein 24 116 3.0E-9 T 10-10-2018 IPR024952 Lipoprotein LPP20-like VF_1883 167194ddef34d3af940c8ffe113c7393 143 PIRSF PIRSF028687 1 143 5.0E-61 T 10-10-2018 IPR007293 Flagellar protein FlgP VF_0143 dd1952c58256b7d01d8a1e5ae71e5543 357 TIGRFAM TIGR03569 NeuB_NnaB: N-acetylneuraminate synthase 2 355 1.8E-149 T 10-10-2018 IPR020007 N-acetylneuraminate synthase KEGG: 00520+2.5.1.101|MetaCyc: PWY-6749|MetaCyc: PWY-7131 VF_0143 dd1952c58256b7d01d8a1e5ae71e5543 357 Gene3D G3DSA:3.20.20.70 1 286 1.1E-91 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_0143 dd1952c58256b7d01d8a1e5ae71e5543 357 Pfam PF03102 NeuB family 22 289 1.7E-97 T 10-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 VF_0143 dd1952c58256b7d01d8a1e5ae71e5543 357 Gene3D G3DSA:3.90.1210.10 292 357 1.2E-19 T 10-10-2018 VF_0143 dd1952c58256b7d01d8a1e5ae71e5543 357 Pfam PF08666 SAF domain 305 353 1.9E-4 T 10-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 VF_0143 dd1952c58256b7d01d8a1e5ae71e5543 357 SUPERFAMILY SSF51569 2 313 2.69E-76 T 10-10-2018 VF_0143 dd1952c58256b7d01d8a1e5ae71e5543 357 SUPERFAMILY SSF51269 295 356 1.19E-17 T 10-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 VF_0600 2f0b72dabb81ca3dcca329fbf34db88e 257 PIRSF PIRSF029037 1 257 8.6E-112 T 10-10-2018 IPR016908 Uncharacterised conserved protein UCP029037 VF_0600 2f0b72dabb81ca3dcca329fbf34db88e 257 Pfam PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) 1 255 2.0E-112 T 10-10-2018 IPR016908 Uncharacterised conserved protein UCP029037 VF_2388 67a7c81613fafc50c9dc058edc60fa6e 294 SUPERFAMILY SSF53335 46 289 8.81E-44 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_2388 67a7c81613fafc50c9dc058edc60fa6e 294 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 294 2.9E-104 T 10-10-2018 VF_2388 67a7c81613fafc50c9dc058edc60fa6e 294 Gene3D G3DSA:3.40.50.150 102 294 6.4E-57 T 10-10-2018 VF_2388 67a7c81613fafc50c9dc058edc60fa6e 294 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 287 3.9E-110 T 10-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 VF_2388 67a7c81613fafc50c9dc058edc60fa6e 294 PIRSF PIRSF000401 1 294 5.1E-99 T 10-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 VF_2388 67a7c81613fafc50c9dc058edc60fa6e 294 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 293 33.4 T 10-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 VF_1113 fdc81abc94645c6b79914fcd86efb761 283 Gene3D G3DSA:1.10.10.10 1 76 3.6E-19 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1113 fdc81abc94645c6b79914fcd86efb761 283 Pfam PF01380 SIS domain 130 259 2.5E-20 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VF_1113 fdc81abc94645c6b79914fcd86efb761 283 SUPERFAMILY SSF53697 98 279 5.89E-38 T 10-10-2018 VF_1113 fdc81abc94645c6b79914fcd86efb761 283 SUPERFAMILY SSF46689 1 77 1.52E-17 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_1113 fdc81abc94645c6b79914fcd86efb761 283 Gene3D G3DSA:3.40.50.10490 99 280 2.8E-40 T 10-10-2018 VF_1113 fdc81abc94645c6b79914fcd86efb761 283 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 74 8.5E-23 T 10-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 VF_1171 7d187c55deb350e151cd83fdc5c8326b 384 Pfam PF03222 Tryptophan/tyrosine permease family 4 380 2.8E-72 T 10-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 VF_1171 7d187c55deb350e151cd83fdc5c8326b 384 PRINTS PR00166 Aromatic amino acid permease signature 327 346 1.3E-29 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1171 7d187c55deb350e151cd83fdc5c8326b 384 PRINTS PR00166 Aromatic amino acid permease signature 182 204 1.3E-29 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1171 7d187c55deb350e151cd83fdc5c8326b 384 PRINTS PR00166 Aromatic amino acid permease signature 37 56 1.3E-29 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1171 7d187c55deb350e151cd83fdc5c8326b 384 PRINTS PR00166 Aromatic amino acid permease signature 147 167 1.3E-29 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1171 7d187c55deb350e151cd83fdc5c8326b 384 PRINTS PR00166 Aromatic amino acid permease signature 10 33 1.3E-29 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1171 7d187c55deb350e151cd83fdc5c8326b 384 PRINTS PR00166 Aromatic amino acid permease signature 82 102 1.3E-29 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_1171 7d187c55deb350e151cd83fdc5c8326b 384 PRINTS PR00166 Aromatic amino acid permease signature 306 324 1.3E-29 T 10-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VF_0509 11e2fd856ec84c0c6a9bc0d6f50ea7a5 325 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 111 280 2.0E-23 T 10-10-2018 VF_0509 11e2fd856ec84c0c6a9bc0d6f50ea7a5 325 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 103 313 1.1E-82 T 10-10-2018 VF_0509 11e2fd856ec84c0c6a9bc0d6f50ea7a5 325 Pfam PF12710 haloacid dehalogenase-like hydrolase 111 279 2.9E-14 T 10-10-2018 VF_0509 11e2fd856ec84c0c6a9bc0d6f50ea7a5 325 SUPERFAMILY SSF56784 103 309 1.63E-48 T 10-10-2018 IPR036412 HAD-like superfamily VF_0509 11e2fd856ec84c0c6a9bc0d6f50ea7a5 325 Gene3D G3DSA:3.40.50.1000 10 313 1.9E-149 T 10-10-2018 IPR023214 HAD superfamily VF_0509 11e2fd856ec84c0c6a9bc0d6f50ea7a5 325 Gene3D G3DSA:1.10.150.210 118 180 1.9E-149 T 10-10-2018 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 VF_0509 11e2fd856ec84c0c6a9bc0d6f50ea7a5 325 Gene3D G3DSA:3.30.70.2020 11 325 1.9E-149 T 10-10-2018 VF_1242 ef1e202e42130d3a61669542e91268f2 294 Gene3D G3DSA:3.20.20.60 32 294 2.4E-41 T 10-10-2018 VF_1242 ef1e202e42130d3a61669542e91268f2 294 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 88 265 1.0E-22 T 10-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 VF_1242 ef1e202e42130d3a61669542e91268f2 294 SUPERFAMILY SSF51621 52 265 7.42E-39 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VF_0124 859f7bc9578f6395a035fd54fe79f50b 196 Gene3D G3DSA:1.10.357.10 3 196 2.7E-73 T 10-10-2018 VF_0124 859f7bc9578f6395a035fd54fe79f50b 196 SUPERFAMILY SSF46689 4 78 1.55E-13 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_0124 859f7bc9578f6395a035fd54fe79f50b 196 SUPERFAMILY SSF48498 81 191 5.78E-9 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VF_0124 859f7bc9578f6395a035fd54fe79f50b 196 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 196 40.875 T 10-10-2018 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 VF_0124 859f7bc9578f6395a035fd54fe79f50b 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 58 9.1E-11 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_0210 ea8faa366fd7f83452cbcf9efd6e11a1 80 Hamap MF_01196 Cell division protein ZapB [zapB]. 1 79 17.275 T 10-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 VF_0210 ea8faa366fd7f83452cbcf9efd6e11a1 80 Gene3D G3DSA:1.20.5.340 1 79 1.4E-28 T 10-10-2018 VF_0210 ea8faa366fd7f83452cbcf9efd6e11a1 80 Pfam PF06005 Cell division protein ZapB 1 78 2.2E-23 T 10-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 VF_A0645 865927f5a8eda825005b9288d17a4f13 147 Pfam PF13673 Acetyltransferase (GNAT) domain 38 145 2.9E-10 T 10-10-2018 IPR000182 GNAT domain VF_A0645 865927f5a8eda825005b9288d17a4f13 147 SUPERFAMILY SSF55729 6 145 2.57E-19 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A0645 865927f5a8eda825005b9288d17a4f13 147 Gene3D G3DSA:3.40.630.30 4 145 6.3E-17 T 10-10-2018 VF_A0949 9dcdd4ef3efe79967972c0ccb7b9d78b 205 Pfam PF11153 Protein of unknown function (DUF2931) 4 203 2.3E-46 T 10-10-2018 IPR021326 Protein of unknown function DUF2931 VF_1564 1200ac778bd245b5fa28e75a42d51150 280 Pfam PF02361 Cobalt transport protein 17 237 3.1E-31 T 10-10-2018 IPR003339 ABC/ECF transporter, transmembrane component VF_0260 b41e229926a342e0891654669c4f87f2 129 PIRSF PIRSF002131 1 129 3.7E-52 T 10-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 VF_0260 b41e229926a342e0891654669c4f87f2 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 6.6E-54 T 10-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0260 b41e229926a342e0891654669c4f87f2 129 Pfam PF00411 Ribosomal protein S11 19 128 1.7E-51 T 10-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 VF_0260 b41e229926a342e0891654669c4f87f2 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 32.358 T 10-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 VF_0260 b41e229926a342e0891654669c4f87f2 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 10-10-2018 IPR018102 Ribosomal S11, conserved site VF_0260 b41e229926a342e0891654669c4f87f2 129 SUPERFAMILY SSF53137 14 129 1.01E-47 T 10-10-2018 VF_0260 b41e229926a342e0891654669c4f87f2 129 Gene3D G3DSA:3.30.420.80 1 129 4.6E-57 T 10-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 VF_1635 ed4fedab430e8a3bd5a0b31cb23ba683 169 Gene3D G3DSA:1.20.1550.10 1 169 5.3E-56 T 10-10-2018 IPR023380 DsbB-like superfamily VF_1635 ed4fedab430e8a3bd5a0b31cb23ba683 169 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 6 167 21.107 T 10-10-2018 IPR022920 Disulphide bond formation protein DsbB VF_1635 ed4fedab430e8a3bd5a0b31cb23ba683 169 Pfam PF02600 Disulfide bond formation protein DsbB 11 159 1.8E-42 T 10-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 VF_1635 ed4fedab430e8a3bd5a0b31cb23ba683 169 SUPERFAMILY SSF158442 14 160 9.68E-45 T 10-10-2018 IPR023380 DsbB-like superfamily VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 7.1E-11 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 7.1E-11 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 7.1E-11 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 7.1E-11 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 7.1E-11 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 616 628 7.1E-11 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 7.1E-11 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 623 1.6E-74 T 10-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 Pfam PF01578 Cytochrome C assembly protein 89 295 7.6E-48 T 10-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 54 626 9.6E-200 T 10-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 3.3E-78 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 3.3E-78 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 3.3E-78 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 3.3E-78 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 3.3E-78 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 3.3E-78 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 3.3E-78 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1550 9d0dc3037bf0dd4a9450c8995f23e1aa 628 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 3.3E-78 T 10-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_A1002 cad02182f58cff29011ef14528ee4091 256 Pfam PF03609 PTS system sorbose-specific iic component 3 232 2.2E-68 T 10-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 VF_1366 5a14bfdb5dc16b0c9836ceb92dccad08 273 Pfam PF02634 FdhD/NarQ family 36 267 2.2E-74 T 10-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 VF_1366 5a14bfdb5dc16b0c9836ceb92dccad08 273 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 11 268 26.07 T 10-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 VF_1366 5a14bfdb5dc16b0c9836ceb92dccad08 273 PIRSF PIRSF015626 2 272 1.2E-91 T 10-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 VF_1366 5a14bfdb5dc16b0c9836ceb92dccad08 273 Gene3D G3DSA:3.40.140.10 123 272 1.4E-42 T 10-10-2018 VF_1366 5a14bfdb5dc16b0c9836ceb92dccad08 273 Gene3D G3DSA:3.10.20.10 37 120 9.1E-9 T 10-10-2018 VF_1366 5a14bfdb5dc16b0c9836ceb92dccad08 273 SUPERFAMILY SSF53927 15 267 9.02E-70 T 10-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VF_0483 a2852aadb4d3baea300f7f8e7791d96c 110 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 2 73 2.0E-27 T 10-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VF_0483 a2852aadb4d3baea300f7f8e7791d96c 110 Pfam PF03840 Preprotein translocase SecG subunit 4 72 4.8E-23 T 10-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VF_0483 a2852aadb4d3baea300f7f8e7791d96c 110 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 6.0E-45 T 10-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VF_0483 a2852aadb4d3baea300f7f8e7791d96c 110 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 6.0E-45 T 10-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VF_0483 a2852aadb4d3baea300f7f8e7791d96c 110 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 6.0E-45 T 10-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VF_0483 a2852aadb4d3baea300f7f8e7791d96c 110 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 6.0E-45 T 10-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VF_A0666 ccb9f01391c8d7b47b3b3598ad99e986 141 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 21 135 6.3E-37 T 10-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 VF_A0666 ccb9f01391c8d7b47b3b3598ad99e986 141 Gene3D G3DSA:3.10.129.10 1 141 4.7E-55 T 10-10-2018 VF_A0666 ccb9f01391c8d7b47b3b3598ad99e986 141 SUPERFAMILY SSF54637 1 140 7.9E-33 T 10-10-2018 IPR029069 HotDog domain superfamily VF_A0666 ccb9f01391c8d7b47b3b3598ad99e986 141 Pfam PF03061 Thioesterase superfamily 52 128 3.4E-15 T 10-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 VF_0817 4967f0e0d41cc1997900709b95cc09c4 251 SUPERFAMILY SSF102705 1 250 3.66E-85 T 10-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily VF_0817 4967f0e0d41cc1997900709b95cc09c4 251 Gene3D G3DSA:3.40.1390.30 97 222 2.6E-85 T 10-10-2018 VF_0817 4967f0e0d41cc1997900709b95cc09c4 251 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 237 1.1E-63 T 10-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 VF_0817 4967f0e0d41cc1997900709b95cc09c4 251 Gene3D G3DSA:3.40.1390.30 14 236 2.6E-85 T 10-10-2018 VF_0817 4967f0e0d41cc1997900709b95cc09c4 251 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 1 250 7.6E-72 T 10-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 VF_1688 dc1300de5abf2e91c238506808d40749 181 Pfam PF00156 Phosphoribosyl transferase domain 33 154 6.9E-16 T 10-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VF_1688 dc1300de5abf2e91c238506808d40749 181 Gene3D G3DSA:3.40.50.2020 1 181 7.0E-67 T 10-10-2018 VF_1688 dc1300de5abf2e91c238506808d40749 181 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 9 178 37.918 T 10-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 VF_1688 dc1300de5abf2e91c238506808d40749 181 SUPERFAMILY SSF53271 12 178 7.0E-52 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like VF_1688 dc1300de5abf2e91c238506808d40749 181 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 9 177 2.4E-72 T 10-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 VF_A0458 cd92b4776ff8600c12d001d2008b5395 296 Pfam PF10972 Peptidoglycan-binding protein, CsiV 7 296 1.3E-63 T 10-10-2018 IPR021241 Peptidoglycan-binding protein, CsiV VF_A0484 288ea412f5a0fd66caa6fd4a190f5f0b 576 Pfam PF00849 RNA pseudouridylate synthase 382 529 2.5E-31 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_A0484 288ea412f5a0fd66caa6fd4a190f5f0b 576 Gene3D G3DSA:3.30.2350.10 365 576 6.2E-63 T 10-10-2018 VF_A0484 288ea412f5a0fd66caa6fd4a190f5f0b 576 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 420 434 - T 10-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_A0484 288ea412f5a0fd66caa6fd4a190f5f0b 576 SUPERFAMILY SSF55120 370 574 1.47E-58 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_2159 0eeeb7fc62ae77db7729518f39d83e8d 756 Pfam PF07244 Surface antigen variable number repeat 343 414 5.3E-6 T 10-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VF_2159 0eeeb7fc62ae77db7729518f39d83e8d 756 Gene3D G3DSA:3.40.1090.10 129 276 2.9E-21 T 10-10-2018 VF_2159 0eeeb7fc62ae77db7729518f39d83e8d 756 Gene3D G3DSA:3.40.1090.10 12 118 1.6E-30 T 10-10-2018 VF_2159 0eeeb7fc62ae77db7729518f39d83e8d 756 SUPERFAMILY SSF52151 27 268 5.23E-58 T 10-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VF_2159 0eeeb7fc62ae77db7729518f39d83e8d 756 Pfam PF01734 Patatin-like phospholipase 32 223 6.2E-30 T 10-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 VF_2159 0eeeb7fc62ae77db7729518f39d83e8d 756 Gene3D G3DSA:3.10.20.310 335 417 2.5E-10 T 10-10-2018 VF_1370 e998c5d77ed576ab43232adc37118d5e 212 SUPERFAMILY SSF53182 1 204 6.15E-70 T 10-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 VF_1370 e998c5d77ed576ab43232adc37118d5e 212 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 3 210 3.9E-76 T 10-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 VF_1370 e998c5d77ed576ab43232adc37118d5e 212 Pfam PF01470 Pyroglutamyl peptidase 2 200 7.4E-77 T 10-10-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like MetaCyc: PWY-7942 VF_1370 e998c5d77ed576ab43232adc37118d5e 212 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 198 38.357 T 10-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 VF_1370 e998c5d77ed576ab43232adc37118d5e 212 Gene3D G3DSA:3.40.630.20 1 212 1.8E-76 T 10-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 VF_1370 e998c5d77ed576ab43232adc37118d5e 212 PIRSF PIRSF015592 1 210 8.6E-82 T 10-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 VF_1370 e998c5d77ed576ab43232adc37118d5e 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 5.1E-42 T 10-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 VF_1370 e998c5d77ed576ab43232adc37118d5e 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 132 148 5.1E-42 T 10-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 VF_1370 e998c5d77ed576ab43232adc37118d5e 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 62 74 5.1E-42 T 10-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 VF_1370 e998c5d77ed576ab43232adc37118d5e 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 80 100 5.1E-42 T 10-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 VF_1370 e998c5d77ed576ab43232adc37118d5e 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 160 172 5.1E-42 T 10-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 VF_1370 e998c5d77ed576ab43232adc37118d5e 212 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 130 144 - T 10-10-2018 IPR033694 Pyroglutamyl peptidase I, Cys active site MetaCyc: PWY-7942 VF_1729 6e2cd7bb6eefba82be9c990b12446429 193 SUPERFAMILY SSF56925 17 193 8.89E-17 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VF_1729 6e2cd7bb6eefba82be9c990b12446429 193 Gene3D G3DSA:2.40.160.20 22 193 1.4E-9 T 10-10-2018 VF_1729 6e2cd7bb6eefba82be9c990b12446429 193 Pfam PF13505 Outer membrane protein beta-barrel domain 46 191 6.7E-7 T 10-10-2018 IPR027385 Outer membrane protein beta-barrel VF_1947 625716344108b090fb7c85ae3347620b 1159 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1030 0.0 T 10-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1947 625716344108b090fb7c85ae3347620b 1159 SMART SM00481 7 74 1.5E-24 T 10-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal VF_1947 625716344108b090fb7c85ae3347620b 1159 Gene3D G3DSA:3.20.20.140 1 270 6.7E-93 T 10-10-2018 VF_1947 625716344108b090fb7c85ae3347620b 1159 Pfam PF02811 PHP domain 8 172 9.8E-42 T 10-10-2018 IPR004013 PHP domain GO:0003824 VF_1947 625716344108b090fb7c85ae3347620b 1159 SUPERFAMILY SSF50249 989 1065 7.48E-6 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1947 625716344108b090fb7c85ae3347620b 1159 Gene3D G3DSA:1.10.10.1600 433 510 4.0E-33 T 10-10-2018 VF_1947 625716344108b090fb7c85ae3347620b 1159 Gene3D G3DSA:2.40.50.140 984 1072 6.1E-9 T 10-10-2018 VF_1947 625716344108b090fb7c85ae3347620b 1159 SUPERFAMILY SSF89550 5 263 5.69E-15 T 10-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 VF_1947 625716344108b090fb7c85ae3347620b 1159 Pfam PF14579 Helix-hairpin-helix motif 809 897 7.1E-26 T 10-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1947 625716344108b090fb7c85ae3347620b 1159 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 291 735 2.2E-173 T 10-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_1947 625716344108b090fb7c85ae3347620b 1159 Pfam PF01336 OB-fold nucleic acid binding domain 993 1069 1.8E-10 T 10-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 VF_0599 e80ea1cd8ee080fee239e803266919e7 183 Hamap MF_01104 Protein Syd [syd]. 3 181 37.358 T 10-10-2018 IPR009948 Syd GO:0009898 VF_0599 e80ea1cd8ee080fee239e803266919e7 183 Gene3D G3DSA:3.40.1580.20 2 181 1.2E-68 T 10-10-2018 IPR038228 Syd superfamily VF_0599 e80ea1cd8ee080fee239e803266919e7 183 Pfam PF07348 Syd protein (SUKH-2) 7 179 7.7E-70 T 10-10-2018 IPR009948 Syd GO:0009898 VF_0884 adaf4d6a76e1c1b3f969f606643ed208 223 SUPERFAMILY SSF52540 1 217 1.12E-59 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0884 adaf4d6a76e1c1b3f969f606643ed208 223 SMART SM00382 30 216 1.4E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0884 adaf4d6a76e1c1b3f969f606643ed208 223 Gene3D G3DSA:3.40.50.300 1 219 2.1E-60 T 10-10-2018 VF_0884 adaf4d6a76e1c1b3f969f606643ed208 223 Pfam PF00005 ABC transporter 21 167 6.1E-32 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0884 adaf4d6a76e1c1b3f969f606643ed208 223 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1681 60d6e80b3a66588fec484e3beed39c39 482 Gene3D G3DSA:3.40.605.10 33 452 2.3E-144 T 10-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VF_1681 60d6e80b3a66588fec484e3beed39c39 482 PIRSF PIRSF036492 11 481 1.5E-153 T 10-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 VF_1681 60d6e80b3a66588fec484e3beed39c39 482 Gene3D G3DSA:3.40.309.10 232 432 2.3E-144 T 10-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VF_1681 60d6e80b3a66588fec484e3beed39c39 482 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 228 235 - T 10-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 VF_1681 60d6e80b3a66588fec484e3beed39c39 482 SUPERFAMILY SSF53720 19 470 1.57E-108 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VF_1681 60d6e80b3a66588fec484e3beed39c39 482 Pfam PF00171 Aldehyde dehydrogenase family 32 452 3.9E-84 T 10-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VF_1107 c626300be1f9457dfb4334f640b02bf5 227 Pfam PF00005 ABC transporter 24 172 2.8E-34 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1107 c626300be1f9457dfb4334f640b02bf5 227 SUPERFAMILY SSF52540 3 224 8.12E-71 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1107 c626300be1f9457dfb4334f640b02bf5 227 Gene3D G3DSA:3.40.50.300 1 227 5.5E-70 T 10-10-2018 VF_1107 c626300be1f9457dfb4334f640b02bf5 227 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_1107 c626300be1f9457dfb4334f640b02bf5 227 SMART SM00382 32 220 1.1E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0231 ee677f8cfa445269b980fdb76dd4e759 211 Gene3D G3DSA:1.10.10.10 2 116 1.8E-12 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0231 ee677f8cfa445269b980fdb76dd4e759 211 Pfam PF00486 Transcriptional regulatory protein, C terminal 23 93 1.0E-9 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0231 ee677f8cfa445269b980fdb76dd4e759 211 SUPERFAMILY SSF46894 21 96 9.35E-12 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_0982 a261daa2d72eb8de4ffae5eee9759d94 285 Pfam PF00892 EamA-like transporter family 142 274 4.8E-7 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_0982 a261daa2d72eb8de4ffae5eee9759d94 285 Pfam PF00892 EamA-like transporter family 3 127 2.9E-6 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_0982 a261daa2d72eb8de4ffae5eee9759d94 285 SUPERFAMILY SSF103481 180 277 4.32E-8 T 10-10-2018 VF_0982 a261daa2d72eb8de4ffae5eee9759d94 285 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 11 273 2.1E-71 T 10-10-2018 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 VF_A0839 96332ca9c364ab96347e49c731ae727e 308 ProSitePatterns PS01053 Arginase family signature. 229 250 - T 10-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 VF_A0839 96332ca9c364ab96347e49c731ae727e 308 SUPERFAMILY SSF52768 12 303 4.86E-94 T 10-10-2018 IPR023696 Ureohydrolase domain superfamily VF_A0839 96332ca9c364ab96347e49c731ae727e 308 Pfam PF00491 Arginase family 33 297 2.9E-87 T 10-10-2018 IPR006035 Ureohydrolase GO:0046872 VF_A0839 96332ca9c364ab96347e49c731ae727e 308 Gene3D G3DSA:3.40.800.10 1 308 5.2E-105 T 10-10-2018 VF_A0839 96332ca9c364ab96347e49c731ae727e 308 TIGRFAM TIGR01230 agmatinase: agmatinase 23 299 9.6E-92 T 10-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 VF_A0839 96332ca9c364ab96347e49c731ae727e 308 PIRSF PIRSF036979 11 305 4.5E-95 T 10-10-2018 IPR006035 Ureohydrolase GO:0046872 VF_0793 446fd3f9963c9a87f951abcb62cb53e3 214 PRINTS PR00094 Adenylate kinase signature 173 187 1.4E-34 T 10-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VF_0793 446fd3f9963c9a87f951abcb62cb53e3 214 PRINTS PR00094 Adenylate kinase signature 4 17 1.4E-34 T 10-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VF_0793 446fd3f9963c9a87f951abcb62cb53e3 214 PRINTS PR00094 Adenylate kinase signature 32 46 1.4E-34 T 10-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VF_0793 446fd3f9963c9a87f951abcb62cb53e3 214 PRINTS PR00094 Adenylate kinase signature 81 97 1.4E-34 T 10-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VF_0793 446fd3f9963c9a87f951abcb62cb53e3 214 PRINTS PR00094 Adenylate kinase signature 156 171 1.4E-34 T 10-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VF_0793 446fd3f9963c9a87f951abcb62cb53e3 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 2.7E-73 T 10-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 VF_0793 446fd3f9963c9a87f951abcb62cb53e3 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 5.0E-15 T 10-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 VF_0793 446fd3f9963c9a87f951abcb62cb53e3 214 Gene3D G3DSA:3.40.50.300 1 214 3.7E-76 T 10-10-2018 VF_0793 446fd3f9963c9a87f951abcb62cb53e3 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 51.776 T 10-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VF_0793 446fd3f9963c9a87f951abcb62cb53e3 214 SUPERFAMILY SSF52540 1 188 4.46E-44 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0793 446fd3f9963c9a87f951abcb62cb53e3 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 10-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VF_0793 446fd3f9963c9a87f951abcb62cb53e3 214 Pfam PF00406 Adenylate kinase 5 186 1.9E-58 T 10-10-2018 VF_1070 93baa6558699738c03d1490975ab4478 492 Pfam PF06742 Protein of unknown function (DUF1214) 371 474 3.4E-27 T 10-10-2018 IPR010621 Domain of unknown function DUF1214 VF_1070 93baa6558699738c03d1490975ab4478 492 Gene3D G3DSA:2.60.40.1610 92 228 4.7E-50 T 10-10-2018 IPR037050 Domain of unknown function DUF1254 superfamily VF_1070 93baa6558699738c03d1490975ab4478 492 Gene3D G3DSA:1.10.3360.10 63 292 4.7E-50 T 10-10-2018 IPR023289 VPA0735-like domain superfamily VF_1070 93baa6558699738c03d1490975ab4478 492 Gene3D G3DSA:2.60.120.600 312 492 4.2E-44 T 10-10-2018 IPR037049 Domain of unknown function DUF1214, C-terminal domain superfamily VF_1070 93baa6558699738c03d1490975ab4478 492 Pfam PF06863 Protein of unknown function (DUF1254) 110 210 7.6E-9 T 10-10-2018 IPR010679 Domain of unknown function DUF1254 VF_1070 93baa6558699738c03d1490975ab4478 492 SUPERFAMILY SSF160935 44 479 1.23E-94 T 10-10-2018 VF_0363 4fca76d1227fbd1f6dd4caf1b0804dbb 408 Gene3D G3DSA:1.20.81.30 61 177 6.7E-31 T 10-10-2018 VF_0363 4fca76d1227fbd1f6dd4caf1b0804dbb 408 Pfam PF00482 Type II secretion system (T2SS), protein F 275 397 1.0E-27 T 10-10-2018 IPR018076 Type II secretion system F domain VF_0363 4fca76d1227fbd1f6dd4caf1b0804dbb 408 Pfam PF00482 Type II secretion system (T2SS), protein F 72 195 3.5E-30 T 10-10-2018 IPR018076 Type II secretion system F domain VF_0363 4fca76d1227fbd1f6dd4caf1b0804dbb 408 Gene3D G3DSA:1.20.81.30 258 371 9.0E-30 T 10-10-2018 VF_0363 4fca76d1227fbd1f6dd4caf1b0804dbb 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 167 195 8.4E-9 T 10-10-2018 IPR003004 GspF/PilC family VF_0363 4fca76d1227fbd1f6dd4caf1b0804dbb 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 370 384 8.4E-9 T 10-10-2018 IPR003004 GspF/PilC family VF_0363 4fca76d1227fbd1f6dd4caf1b0804dbb 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 68 80 8.4E-9 T 10-10-2018 IPR003004 GspF/PilC family VF_0363 4fca76d1227fbd1f6dd4caf1b0804dbb 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 386 405 8.4E-9 T 10-10-2018 IPR003004 GspF/PilC family VF_B0013 90e6c108124f915f397f35b29c0eb7ab 191 Pfam PF13614 AAA domain 1 49 5.3E-10 T 10-10-2018 IPR025669 AAA domain VF_B0013 90e6c108124f915f397f35b29c0eb7ab 191 SUPERFAMILY SSF52540 1 169 9.75E-17 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_B0013 90e6c108124f915f397f35b29c0eb7ab 191 Gene3D G3DSA:3.40.50.300 3 191 8.5E-23 T 10-10-2018 VF_0654 8630b608e904d5077b97714763cb7b47 106 Pfam PF12286 Protein of unknown function (DUF3622) 2 68 7.9E-32 T 10-10-2018 IPR022069 Protein of unknown function DUF3622 VF_1736 77e64cea0d8ccb0881e2fbe2833e9398 301 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 1 297 30.883 T 10-10-2018 IPR003770 Endolytic murein transglycosylase VF_1736 77e64cea0d8ccb0881e2fbe2833e9398 301 Gene3D G3DSA:1.10.8.1150 3 76 2.2E-9 T 10-10-2018 VF_1736 77e64cea0d8ccb0881e2fbe2833e9398 301 Gene3D G3DSA:3.30.160.60 267 301 1.2E-17 T 10-10-2018 VF_1736 77e64cea0d8ccb0881e2fbe2833e9398 301 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 6 300 1.1E-97 T 10-10-2018 IPR003770 Endolytic murein transglycosylase VF_1736 77e64cea0d8ccb0881e2fbe2833e9398 301 Pfam PF02618 YceG-like family 8 293 9.4E-81 T 10-10-2018 IPR003770 Endolytic murein transglycosylase VF_2377 57c3e6a5ded3c9156e889bc4f7dac999 567 Pfam PF00474 Sodium:solute symporter family 369 489 3.3E-18 T 10-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VF_2377 57c3e6a5ded3c9156e889bc4f7dac999 567 Pfam PF00474 Sodium:solute symporter family 33 298 4.3E-34 T 10-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VF_2377 57c3e6a5ded3c9156e889bc4f7dac999 567 TIGRFAM TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily 8 558 6.0E-260 T 10-10-2018 IPR019899 Sodium/solute symporter, VC2705 subfamily VF_2377 57c3e6a5ded3c9156e889bc4f7dac999 567 Gene3D G3DSA:1.20.1730.10 5 328 2.3E-36 T 10-10-2018 IPR038377 Sodium/glucose symporter superfamily VF_2377 57c3e6a5ded3c9156e889bc4f7dac999 567 Gene3D G3DSA:1.20.1730.10 351 556 3.4E-28 T 10-10-2018 IPR038377 Sodium/glucose symporter superfamily VF_0154 d1af0bfcf0ac840be33e6537a0777db2 117 Pfam PF05635 23S rRNA-intervening sequence protein 4 104 5.7E-31 T 10-10-2018 IPR012657 23S rRNA-intervening sequence protein VF_0154 d1af0bfcf0ac840be33e6537a0777db2 117 SUPERFAMILY SSF158446 1 107 2.09E-33 T 10-10-2018 IPR036583 23S rRNA-intervening sequence superfamily VF_0154 d1af0bfcf0ac840be33e6537a0777db2 117 Gene3D G3DSA:1.20.1440.60 1 114 2.1E-31 T 10-10-2018 IPR036583 23S rRNA-intervening sequence superfamily VF_0154 d1af0bfcf0ac840be33e6537a0777db2 117 TIGRFAM TIGR02436 TIGR02436: four helix bundle protein 8 110 5.8E-31 T 10-10-2018 IPR012657 23S rRNA-intervening sequence protein VF_0369 b54fb3cbbcb7a35d53baf133d0939562 241 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 1.6E-5 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0369 b54fb3cbbcb7a35d53baf133d0939562 241 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 26 7.4E-5 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0349 11758aa7daa278f620c794a695dfbd29 726 Pfam PF13807 G-rich domain on putative tyrosine kinase 374 446 2.4E-7 T 10-10-2018 IPR032807 Tyrosine kinase, G-rich domain VF_0349 11758aa7daa278f620c794a695dfbd29 726 Pfam PF06564 Cellulose biosynthesis protein BcsQ 580 662 8.5E-5 T 10-10-2018 IPR017746 Cellulose synthase operon protein BcsQ VF_0349 11758aa7daa278f620c794a695dfbd29 726 Pfam PF02706 Chain length determinant protein 15 106 4.4E-8 T 10-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 VF_0349 11758aa7daa278f620c794a695dfbd29 726 SUPERFAMILY SSF52540 530 706 5.31E-12 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0349 11758aa7daa278f620c794a695dfbd29 726 Gene3D G3DSA:3.40.50.300 440 717 1.7E-26 T 10-10-2018 VF_0841 c0d5b3d8df192f2aafa26b8256cf39c2 410 Pfam PF04820 Tryptophan halogenase 8 80 1.1E-8 T 10-10-2018 IPR006905 Flavin-dependent halogenase VF_0841 c0d5b3d8df192f2aafa26b8256cf39c2 410 Pfam PF04820 Tryptophan halogenase 96 358 2.0E-16 T 10-10-2018 IPR006905 Flavin-dependent halogenase VF_0841 c0d5b3d8df192f2aafa26b8256cf39c2 410 SUPERFAMILY SSF51905 6 386 2.59E-44 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0841 c0d5b3d8df192f2aafa26b8256cf39c2 410 Gene3D G3DSA:3.50.50.60 4 410 9.6E-120 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0046 10a422dcdea19e0693d20f8c88ef1765 254 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 19 253 38.917 T 10-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 VF_0046 10a422dcdea19e0693d20f8c88ef1765 254 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 161 175 - T 10-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 VF_0046 10a422dcdea19e0693d20f8c88ef1765 254 SUPERFAMILY SSF53335 21 252 4.34E-50 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_0046 10a422dcdea19e0693d20f8c88ef1765 254 Gene3D G3DSA:3.40.50.150 34 254 3.7E-73 T 10-10-2018 VF_0046 10a422dcdea19e0693d20f8c88ef1765 254 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 28 253 7.6E-86 T 10-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 VF_0046 10a422dcdea19e0693d20f8c88ef1765 254 Pfam PF01209 ubiE/COQ5 methyltransferase family 20 253 1.4E-105 T 10-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 VF_0046 10a422dcdea19e0693d20f8c88ef1765 254 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 39 54 - T 10-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 VF_2466 0044904689bb69ada24f3a85ea8bb687 417 PIRSF PIRSF015761 18 417 1.9E-39 T 10-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 VF_2466 0044904689bb69ada24f3a85ea8bb687 417 TIGRFAM TIGR01709 typeII_sec_gspL: type II secretion system protein L 5 416 2.2E-85 T 10-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 VF_2466 0044904689bb69ada24f3a85ea8bb687 417 Gene3D G3DSA:3.30.420.370 142 229 1.2E-87 T 10-10-2018 VF_2466 0044904689bb69ada24f3a85ea8bb687 417 SUPERFAMILY SSF53067 2 144 2.52E-38 T 10-10-2018 VF_2466 0044904689bb69ada24f3a85ea8bb687 417 Pfam PF12693 GspL periplasmic domain 258 416 1.5E-42 T 10-10-2018 IPR025691 GspL periplasmic domain VF_2466 0044904689bb69ada24f3a85ea8bb687 417 Pfam PF05134 Type II secretion system (T2SS), protein L 5 253 5.4E-61 T 10-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain VF_2466 0044904689bb69ada24f3a85ea8bb687 417 Gene3D G3DSA:3.30.1360.100 332 417 1.3E-26 T 10-10-2018 VF_2466 0044904689bb69ada24f3a85ea8bb687 417 Gene3D G3DSA:3.30.420.380 3 251 1.2E-87 T 10-10-2018 VF_2466 0044904689bb69ada24f3a85ea8bb687 417 SUPERFAMILY SSF53067 146 252 5.31E-19 T 10-10-2018 VF_0315 e421c90234a685ee4213c1dff01d1bd0 216 Pfam PF04225 Opacity-associated protein A LysM-like domain 132 216 5.6E-38 T 10-10-2018 IPR007340 Opacity-associated protein A VF_0315 e421c90234a685ee4213c1dff01d1bd0 216 Gene3D G3DSA:3.10.450.350 121 215 9.3E-14 T 10-10-2018 VF_0315 e421c90234a685ee4213c1dff01d1bd0 216 Pfam PF08525 Opacity-associated protein A N-terminal motif 36 62 3.8E-9 T 10-10-2018 IPR013731 Opacity-associated protein A, N-terminal VF_A0936 de3c5c9f53337ce5825388b5be5ada19 276 SUPERFAMILY SSF52266 94 275 1.51E-43 T 10-10-2018 VF_A0936 de3c5c9f53337ce5825388b5be5ada19 276 Gene3D G3DSA:3.40.50.1110 81 271 4.8E-37 T 10-10-2018 IPR036514 SGNH hydrolase superfamily VF_A0936 de3c5c9f53337ce5825388b5be5ada19 276 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 110 260 1.5E-23 T 10-10-2018 IPR013830 SGNH hydrolase-type esterase domain VF_2086 83e167ad7a3ac7b2f6435372ced7d7cf 321 Gene3D G3DSA:3.30.300.20 205 319 1.2E-41 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta VF_2086 83e167ad7a3ac7b2f6435372ced7d7cf 321 Pfam PF07650 KH domain 228 305 9.1E-19 T 10-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VF_2086 83e167ad7a3ac7b2f6435372ced7d7cf 321 Hamap MF_00367 GTPase Era [era]. 25 317 35.891 T 10-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2086 83e167ad7a3ac7b2f6435372ced7d7cf 321 SUPERFAMILY SSF52540 30 225 9.64E-47 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2086 83e167ad7a3ac7b2f6435372ced7d7cf 321 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 27 189 1.7E-40 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VF_2086 83e167ad7a3ac7b2f6435372ced7d7cf 321 SUPERFAMILY SSF54814 201 317 1.28E-40 T 10-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 VF_2086 83e167ad7a3ac7b2f6435372ced7d7cf 321 Pfam PF01926 50S ribosome-binding GTPase 30 144 8.9E-24 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_2086 83e167ad7a3ac7b2f6435372ced7d7cf 321 TIGRFAM TIGR00436 era: GTP-binding protein Era 28 300 1.0E-111 T 10-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_2086 83e167ad7a3ac7b2f6435372ced7d7cf 321 Gene3D G3DSA:3.40.50.300 21 203 1.8E-52 T 10-10-2018 VF_A1019 f2e86fae484b4e4b40cc774d981f64e2 704 TIGRFAM TIGR04456 LruC_dom: LruC domain 445 693 8.2E-82 T 10-10-2018 IPR031025 LruC domain VF_A1019 f2e86fae484b4e4b40cc774d981f64e2 704 SUPERFAMILY SSF50952 154 436 6.41E-6 T 10-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 VF_A1019 f2e86fae484b4e4b40cc774d981f64e2 704 SUPERFAMILY SSF63825 19 239 3.4E-16 T 10-10-2018 VF_A1019 f2e86fae484b4e4b40cc774d981f64e2 704 Pfam PF16130 Domain of unknown function (DUF4842) 477 693 1.4E-55 T 10-10-2018 IPR032295 Domain of unknown function DUF4842 VF_1390 85cfd9e51308fc3eb1bfe948ea8c8bc1 563 SUPERFAMILY SSF51055 433 480 9.94E-14 T 10-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1390 85cfd9e51308fc3eb1bfe948ea8c8bc1 563 Pfam PF02839 Carbohydrate binding domain 535 560 4.0E-6 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1390 85cfd9e51308fc3eb1bfe948ea8c8bc1 563 Pfam PF02839 Carbohydrate binding domain 453 477 3.0E-8 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1390 85cfd9e51308fc3eb1bfe948ea8c8bc1 563 Pfam PF00182 Chitinase class I 105 324 7.1E-32 T 10-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VF_1390 85cfd9e51308fc3eb1bfe948ea8c8bc1 563 SUPERFAMILY SSF53955 98 349 6.19E-53 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_1390 85cfd9e51308fc3eb1bfe948ea8c8bc1 563 Gene3D G3DSA:1.10.530.10 104 345 6.0E-77 T 10-10-2018 VF_1390 85cfd9e51308fc3eb1bfe948ea8c8bc1 563 SMART SM00495 436 480 5.0E-11 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1390 85cfd9e51308fc3eb1bfe948ea8c8bc1 563 SMART SM00495 518 563 1.1E-13 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1390 85cfd9e51308fc3eb1bfe948ea8c8bc1 563 Gene3D G3DSA:3.30.20.10 177 247 6.0E-77 T 10-10-2018 VF_1390 85cfd9e51308fc3eb1bfe948ea8c8bc1 563 SUPERFAMILY SSF51055 514 561 3.4E-13 T 10-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1390 85cfd9e51308fc3eb1bfe948ea8c8bc1 563 Gene3D G3DSA:2.10.10.20 518 561 1.8E-17 T 10-10-2018 VF_1390 85cfd9e51308fc3eb1bfe948ea8c8bc1 563 Gene3D G3DSA:2.10.10.20 436 480 1.0E-14 T 10-10-2018 VF_A0207 444482d840edf5df85045323bca54766 316 Gene3D G3DSA:3.60.10.10 91 315 1.5E-17 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VF_A0207 444482d840edf5df85045323bca54766 316 SUPERFAMILY SSF56219 88 312 8.92E-24 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VF_0584 f6ec702dc626c398cd1f14040eb446aa 117 SUPERFAMILY SSF103481 14 112 4.32E-19 T 10-10-2018 VF_0584 f6ec702dc626c398cd1f14040eb446aa 117 Gene3D G3DSA:1.10.3730.20 10 117 4.8E-33 T 10-10-2018 VF_0584 f6ec702dc626c398cd1f14040eb446aa 117 Pfam PF00893 Small Multidrug Resistance protein 12 101 1.6E-24 T 10-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 VF_A0440 99e04fa113e79679b9a10225ab9dc32a 284 Pfam PF12146 Serine aminopeptidase, S33 83 193 3.3E-9 T 10-10-2018 IPR022742 Serine aminopeptidase, S33 VF_A0440 99e04fa113e79679b9a10225ab9dc32a 284 SUPERFAMILY SSF53474 35 277 6.33E-25 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_A0440 99e04fa113e79679b9a10225ab9dc32a 284 Gene3D G3DSA:3.40.50.1820 51 257 1.9E-25 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_0818 430ccf0e8cd1da835b8de70727956bc5 429 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 10-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 VF_0818 430ccf0e8cd1da835b8de70727956bc5 429 SUPERFAMILY SSF48256 4 428 3.14E-168 T 10-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 VF_0818 430ccf0e8cd1da835b8de70727956bc5 429 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 15 421 1.5E-237 T 10-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 VF_0818 430ccf0e8cd1da835b8de70727956bc5 429 PRINTS PR00143 Citrate synthase signature 241 269 1.6E-54 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 VF_0818 430ccf0e8cd1da835b8de70727956bc5 429 PRINTS PR00143 Citrate synthase signature 296 316 1.6E-54 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 VF_0818 430ccf0e8cd1da835b8de70727956bc5 429 PRINTS PR00143 Citrate synthase signature 219 234 1.6E-54 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 VF_0818 430ccf0e8cd1da835b8de70727956bc5 429 PRINTS PR00143 Citrate synthase signature 379 393 1.6E-54 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 VF_0818 430ccf0e8cd1da835b8de70727956bc5 429 PRINTS PR00143 Citrate synthase signature 359 375 1.6E-54 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 VF_0818 430ccf0e8cd1da835b8de70727956bc5 429 PRINTS PR00143 Citrate synthase signature 165 178 1.6E-54 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 VF_0818 430ccf0e8cd1da835b8de70727956bc5 429 Gene3D G3DSA:1.10.230.10 268 376 4.1E-148 T 10-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain VF_0818 430ccf0e8cd1da835b8de70727956bc5 429 PIRSF PIRSF001369 38 429 7.1E-173 T 10-10-2018 IPR024176 Citrate synthase, bacterial-type VF_0818 430ccf0e8cd1da835b8de70727956bc5 429 Gene3D G3DSA:2.20.28.60 1 50 1.2E-26 T 10-10-2018 VF_0818 430ccf0e8cd1da835b8de70727956bc5 429 Gene3D G3DSA:1.10.580.10 57 411 4.1E-148 T 10-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 VF_0818 430ccf0e8cd1da835b8de70727956bc5 429 Pfam PF00285 Citrate synthase, C-terminal domain 49 411 3.6E-133 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 VF_1129 60b190241d0f62bfc2ca89593cb07593 319 SUPERFAMILY SSF56112 26 287 1.46E-23 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily VF_1129 60b190241d0f62bfc2ca89593cb07593 319 SMART SM00587 109 266 8.4E-5 T 10-10-2018 IPR015897 CHK kinase-like VF_1129 60b190241d0f62bfc2ca89593cb07593 319 Pfam PF02958 Ecdysteroid kinase 188 264 3.8E-10 T 10-10-2018 IPR004119 Protein of unknown function DUF227 VF_1129 60b190241d0f62bfc2ca89593cb07593 319 Pfam PF02958 Ecdysteroid kinase 69 142 5.3E-6 T 10-10-2018 IPR004119 Protein of unknown function DUF227 VF_A0582 2027599fa28c57a8b86c8ebf9c846805 111 Pfam PF01381 Helix-turn-helix 6 60 5.0E-14 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_A0582 2027599fa28c57a8b86c8ebf9c846805 111 Gene3D G3DSA:1.10.260.40 1 100 3.4E-20 T 10-10-2018 VF_A0582 2027599fa28c57a8b86c8ebf9c846805 111 SMART SM00530 5 60 5.9E-16 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_A0582 2027599fa28c57a8b86c8ebf9c846805 111 SUPERFAMILY SSF47413 2 67 1.42E-17 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_0263 63436866dde48e73eec87de61f3335fa 126 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 3.8E-50 T 10-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0263 63436866dde48e73eec87de61f3335fa 126 Gene3D G3DSA:3.90.1030.10 1 117 4.4E-48 T 10-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0263 63436866dde48e73eec87de61f3335fa 126 Pfam PF01196 Ribosomal protein L17 20 116 1.9E-34 T 10-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0263 63436866dde48e73eec87de61f3335fa 126 SUPERFAMILY SSF64263 1 119 7.59E-51 T 10-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0263 63436866dde48e73eec87de61f3335fa 126 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 10-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0263 63436866dde48e73eec87de61f3335fa 126 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.582 T 10-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_1320 9b3d8aa026d86397d1e6a71a942a9535 237 Gene3D G3DSA:3.40.50.1220 8 228 2.1E-82 T 10-10-2018 VF_1320 9b3d8aa026d86397d1e6a71a942a9535 237 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 6 236 56.842 T 10-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 VF_1320 9b3d8aa026d86397d1e6a71a942a9535 237 Gene3D G3DSA:3.30.1600.10 22 158 2.1E-82 T 10-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily VF_1320 9b3d8aa026d86397d1e6a71a942a9535 237 Pfam PF02146 Sir2 family 13 186 8.9E-51 T 10-10-2018 IPR003000 Sirtuin family GO:0070403 VF_1320 9b3d8aa026d86397d1e6a71a942a9535 237 SUPERFAMILY SSF52467 6 234 8.0E-76 T 10-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VF_2231 930b16e53a0696283b632dd6e403b4d5 156 Pfam PF06853 Protein of unknown function (DUF1249) 34 146 5.7E-39 T 10-10-2018 IPR009659 Protein of unknown function DUF1249 VF_2101 87adaf70e2d3e4f943f6dc76e8c0826e 399 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 9 394 1.5E-122 T 10-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 VF_2101 87adaf70e2d3e4f943f6dc76e8c0826e 399 Gene3D G3DSA:3.30.9.50 85 274 1.5E-92 T 10-10-2018 VF_2101 87adaf70e2d3e4f943f6dc76e8c0826e 399 Pfam PF01494 FAD binding domain 8 352 1.5E-19 T 10-10-2018 IPR002938 FAD-binding domain GO:0071949 VF_2101 87adaf70e2d3e4f943f6dc76e8c0826e 399 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 9 395 1.2E-138 T 10-10-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 VF_2101 87adaf70e2d3e4f943f6dc76e8c0826e 399 SUPERFAMILY SSF51905 7 386 4.98E-48 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2101 87adaf70e2d3e4f943f6dc76e8c0826e 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 1.4E-12 T 10-10-2018 VF_2101 87adaf70e2d3e4f943f6dc76e8c0826e 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 300 1.4E-12 T 10-10-2018 VF_2101 87adaf70e2d3e4f943f6dc76e8c0826e 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 161 176 1.4E-12 T 10-10-2018 VF_2101 87adaf70e2d3e4f943f6dc76e8c0826e 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 300 316 1.4E-12 T 10-10-2018 VF_2101 87adaf70e2d3e4f943f6dc76e8c0826e 399 Gene3D G3DSA:3.50.50.60 9 343 1.5E-92 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_2101 87adaf70e2d3e4f943f6dc76e8c0826e 399 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 299 312 - T 10-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 VF_A0007 c22cd613082baec18fe6543777091b31 187 SUPERFAMILY SSF51316 2 186 1.46E-53 T 10-10-2018 IPR011057 Mss4-like superfamily VF_A0007 c22cd613082baec18fe6543777091b31 187 Hamap MF_00723 Glutathione-dependent formaldehyde-activating enzyme [gfa]. 1 187 120.484 T 10-10-2018 IPR014185 Glutathione-dependent formaldehyde-activating enzyme GO:0008270|GO:0046294|GO:0051907 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 VF_A0007 c22cd613082baec18fe6543777091b31 187 PIRSF PIRSF033318 2 187 1.3E-108 T 10-10-2018 IPR014185 Glutathione-dependent formaldehyde-activating enzyme GO:0008270|GO:0046294|GO:0051907 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 VF_A0007 c22cd613082baec18fe6543777091b31 187 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 48 112 5.7E-10 T 10-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 VF_A0007 c22cd613082baec18fe6543777091b31 187 Gene3D G3DSA:3.90.1590.10 1 187 1.7E-91 T 10-10-2018 VF_A0007 c22cd613082baec18fe6543777091b31 187 TIGRFAM TIGR02820 formald_GSH: S-(hydroxymethyl)glutathione synthase 5 186 9.4E-106 T 10-10-2018 IPR014185 Glutathione-dependent formaldehyde-activating enzyme GO:0008270|GO:0046294|GO:0051907 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 VF_1327 51ca182177e232cd2c884d8c1e2be76b 141 Pfam PF05232 Chlorhexidine efflux transporter 2 64 7.5E-19 T 10-10-2018 IPR007896 Chlorhexidine efflux transporter VF_1327 51ca182177e232cd2c884d8c1e2be76b 141 Pfam PF05232 Chlorhexidine efflux transporter 71 133 1.8E-24 T 10-10-2018 IPR007896 Chlorhexidine efflux transporter VF_0062 b5cffe3fe9253c3e0e63242e53fceb81 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 30 42 1.2E-14 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_0062 b5cffe3fe9253c3e0e63242e53fceb81 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 95 104 1.2E-14 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_0062 b5cffe3fe9253c3e0e63242e53fceb81 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 111 130 1.2E-14 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_0062 b5cffe3fe9253c3e0e63242e53fceb81 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 136 145 1.2E-14 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_0062 b5cffe3fe9253c3e0e63242e53fceb81 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 46 53 1.2E-14 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VF_0062 b5cffe3fe9253c3e0e63242e53fceb81 236 Pfam PF00970 Oxidoreductase FAD-binding domain 17 100 1.3E-5 T 10-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 VF_0062 b5cffe3fe9253c3e0e63242e53fceb81 236 SUPERFAMILY SSF52343 104 234 1.7E-31 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_0062 b5cffe3fe9253c3e0e63242e53fceb81 236 Pfam PF00175 Oxidoreductase NAD-binding domain 112 214 6.2E-23 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VF_0062 b5cffe3fe9253c3e0e63242e53fceb81 236 SUPERFAMILY SSF63380 2 101 1.7E-17 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VF_0062 b5cffe3fe9253c3e0e63242e53fceb81 236 Gene3D G3DSA:2.40.30.10 2 102 8.0E-22 T 10-10-2018 VF_0062 b5cffe3fe9253c3e0e63242e53fceb81 236 Gene3D G3DSA:3.40.50.80 103 236 4.8E-28 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VF_1140 9a90ae7f08cc1a793204d2466ce575eb 247 Gene3D G3DSA:3.40.50.150 13 215 2.3E-37 T 10-10-2018 VF_1140 9a90ae7f08cc1a793204d2466ce575eb 247 Gene3D G3DSA:2.20.130.10 147 206 2.3E-37 T 10-10-2018 VF_1140 9a90ae7f08cc1a793204d2466ce575eb 247 SUPERFAMILY SSF53335 6 247 7.34E-37 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_1140 9a90ae7f08cc1a793204d2466ce575eb 247 Pfam PF13649 Methyltransferase domain 45 135 3.6E-14 T 10-10-2018 VF_1174 8f727ba330d0a0a30c0a16340e504242 119 Pfam PF10973 Protein of unknown function (DUF2799) 29 112 1.7E-20 T 10-10-2018 IPR021242 Protein of unknown function DUF2799 VF_A1054 8dacf7bec4ed748e061864e142f461a2 143 Gene3D G3DSA:3.40.630.30 2 143 1.7E-31 T 10-10-2018 VF_A1054 8dacf7bec4ed748e061864e142f461a2 143 SUPERFAMILY SSF55729 1 139 8.33E-22 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A1054 8dacf7bec4ed748e061864e142f461a2 143 Pfam PF13673 Acetyltransferase (GNAT) domain 55 128 1.3E-16 T 10-10-2018 IPR000182 GNAT domain VF_0726 b4379436b958b66a97110269d301642a 414 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 4 408 2.3E-200 T 10-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 VF_0726 b4379436b958b66a97110269d301642a 414 PIRSF PIRSF016055 1 414 1.6E-197 T 10-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 VF_0726 b4379436b958b66a97110269d301642a 414 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 412 36.589 T 10-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 VF_0726 b4379436b958b66a97110269d301642a 414 Pfam PF03116 NQR2, RnfD, RnfE family 41 405 1.1E-105 T 10-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 VF_2149 e63b24c065d1deb2c421edfd49dba1bf 344 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_2149 e63b24c065d1deb2c421edfd49dba1bf 344 SMART SM00382 29 216 1.4E-16 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2149 e63b24c065d1deb2c421edfd49dba1bf 344 SUPERFAMILY SSF52540 5 243 6.55E-82 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2149 e63b24c065d1deb2c421edfd49dba1bf 344 Pfam PF00005 ABC transporter 20 164 1.2E-36 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_2149 e63b24c065d1deb2c421edfd49dba1bf 344 Pfam PF08402 TOBE domain 275 335 1.4E-4 T 10-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 VF_2149 e63b24c065d1deb2c421edfd49dba1bf 344 Gene3D G3DSA:3.40.50.300 1 240 1.1E-75 T 10-10-2018 VF_2149 e63b24c065d1deb2c421edfd49dba1bf 344 SUPERFAMILY SSF50331 263 336 1.02E-8 T 10-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VF_2315 5395f51abae71c6f269cdb49fbf8e44d 141 Pfam PF02082 Transcriptional regulator 1 83 1.2E-22 T 10-10-2018 IPR000944 Transcription regulator Rrf2-type VF_2315 5395f51abae71c6f269cdb49fbf8e44d 141 Hamap MF_01177 HTH-type transcriptional repressor NsrR [nsrR]. 1 141 48.196 T 10-10-2018 IPR023761 Transcriptional repressor HTH, NsrR GO:0045892 VF_2315 5395f51abae71c6f269cdb49fbf8e44d 141 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 128 7.1E-34 T 10-10-2018 IPR000944 Transcription regulator Rrf2-type VF_2315 5395f51abae71c6f269cdb49fbf8e44d 141 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 10-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site VF_2315 5395f51abae71c6f269cdb49fbf8e44d 141 SUPERFAMILY SSF46785 2 131 2.99E-31 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_2315 5395f51abae71c6f269cdb49fbf8e44d 141 Gene3D G3DSA:1.10.10.10 1 136 2.1E-32 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2570 db2905e6cd78878bd64340f6a1211276 270 SUPERFAMILY SSF81336 93 262 1.44E-49 T 10-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2570 db2905e6cd78878bd64340f6a1211276 270 PRINTS PR00123 ATP synthase A subunit signature 101 117 9.9E-15 T 10-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2570 db2905e6cd78878bd64340f6a1211276 270 PRINTS PR00123 ATP synthase A subunit signature 200 222 9.9E-15 T 10-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2570 db2905e6cd78878bd64340f6a1211276 270 PRINTS PR00123 ATP synthase A subunit signature 248 263 9.9E-15 T 10-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2570 db2905e6cd78878bd64340f6a1211276 270 ProSitePatterns PS00449 ATP synthase a subunit signature. 203 212 - T 10-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2570 db2905e6cd78878bd64340f6a1211276 270 Gene3D G3DSA:1.20.120.220 92 268 2.6E-66 T 10-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2570 db2905e6cd78878bd64340f6a1211276 270 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 35 263 2.5E-45 T 10-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2570 db2905e6cd78878bd64340f6a1211276 270 Hamap MF_01393 ATP synthase subunit a [atpB]. 14 268 15.715 T 10-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2570 db2905e6cd78878bd64340f6a1211276 270 Pfam PF00119 ATP synthase A chain 44 262 2.4E-57 T 10-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2519 35c76b679b3b298002c38e7fdcb9a44f 578 Pfam PF00005 ABC transporter 33 190 1.1E-28 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_2519 35c76b679b3b298002c38e7fdcb9a44f 578 Pfam PF00005 ABC transporter 339 492 1.5E-34 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_2519 35c76b679b3b298002c38e7fdcb9a44f 578 SUPERFAMILY SSF52540 12 262 4.19E-65 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2519 35c76b679b3b298002c38e7fdcb9a44f 578 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_2519 35c76b679b3b298002c38e7fdcb9a44f 578 SUPERFAMILY SSF52540 313 562 4.35E-73 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2519 35c76b679b3b298002c38e7fdcb9a44f 578 SMART SM00382 41 240 5.4E-16 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2519 35c76b679b3b298002c38e7fdcb9a44f 578 SMART SM00382 347 543 3.1E-17 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_2519 35c76b679b3b298002c38e7fdcb9a44f 578 ProSitePatterns PS00211 ABC transporters family signature. 464 478 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_2519 35c76b679b3b298002c38e7fdcb9a44f 578 Gene3D G3DSA:3.40.50.300 10 302 4.8E-84 T 10-10-2018 VF_2519 35c76b679b3b298002c38e7fdcb9a44f 578 Gene3D G3DSA:3.40.50.300 310 578 1.1E-86 T 10-10-2018 VF_2519 35c76b679b3b298002c38e7fdcb9a44f 578 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 242 277 4.2E-5 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_2519 35c76b679b3b298002c38e7fdcb9a44f 578 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 543 571 0.003 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_0682 4046bc4c64e66ecb255420509bc93c74 575 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 5 572 2.6E-245 T 10-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 VF_0682 4046bc4c64e66ecb255420509bc93c74 575 Gene3D G3DSA:3.30.930.10 15 469 1.4E-234 T 10-10-2018 VF_0682 4046bc4c64e66ecb255420509bc93c74 575 PRINTS PR01046 Prolyl-tRNA synthetase signature 108 119 2.4E-16 T 10-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 VF_0682 4046bc4c64e66ecb255420509bc93c74 575 PRINTS PR01046 Prolyl-tRNA synthetase signature 72 90 2.4E-16 T 10-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 VF_0682 4046bc4c64e66ecb255420509bc93c74 575 PRINTS PR01046 Prolyl-tRNA synthetase signature 138 146 2.4E-16 T 10-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 VF_0682 4046bc4c64e66ecb255420509bc93c74 575 PRINTS PR01046 Prolyl-tRNA synthetase signature 148 159 2.4E-16 T 10-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 VF_0682 4046bc4c64e66ecb255420509bc93c74 575 PIRSF PIRSF001535 5 575 4.7E-265 T 10-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 VF_0682 4046bc4c64e66ecb255420509bc93c74 575 Pfam PF04073 Aminoacyl-tRNA editing domain 261 380 9.0E-26 T 10-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 VF_0682 4046bc4c64e66ecb255420509bc93c74 575 SUPERFAMILY SSF52954 466 574 4.83E-31 T 10-10-2018 VF_0682 4046bc4c64e66ecb255420509bc93c74 575 SUPERFAMILY SSF55681 14 482 1.35E-96 T 10-10-2018 VF_0682 4046bc4c64e66ecb255420509bc93c74 575 SUPERFAMILY SSF55826 222 394 5.23E-30 T 10-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VF_0682 4046bc4c64e66ecb255420509bc93c74 575 Hamap MF_01569 Proline--tRNA ligase [proS]. 5 575 40.849 T 10-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 VF_0682 4046bc4c64e66ecb255420509bc93c74 575 Gene3D G3DSA:3.40.50.800 8 558 1.4E-234 T 10-10-2018 IPR036621 Anticodon-binding domain superfamily VF_0682 4046bc4c64e66ecb255420509bc93c74 575 Pfam PF03129 Anticodon binding domain 480 572 3.1E-20 T 10-10-2018 IPR004154 Anticodon-binding VF_0682 4046bc4c64e66ecb255420509bc93c74 575 Gene3D G3DSA:3.90.960.10 244 393 1.4E-234 T 10-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VF_0682 4046bc4c64e66ecb255420509bc93c74 575 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 99 463 6.1E-41 T 10-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_0041 13e27b000b78d5181f34d91c10b042aa 409 SUPERFAMILY SSF103473 13 395 3.92E-63 T 10-10-2018 IPR036259 MFS transporter superfamily VF_0041 13e27b000b78d5181f34d91c10b042aa 409 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 18 386 3.0E-72 T 10-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 VF_0041 13e27b000b78d5181f34d91c10b042aa 409 ProSitePatterns PS00216 Sugar transport proteins signature 1. 75 91 - T 10-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 VF_0041 13e27b000b78d5181f34d91c10b042aa 409 Pfam PF07690 Major Facilitator Superfamily 27 364 2.6E-47 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_0041 13e27b000b78d5181f34d91c10b042aa 409 Gene3D G3DSA:1.20.1720.10 21 398 4.3E-91 T 10-10-2018 VF_0004 bd8ffd190be5487739ca370e6721dcc0 117 Gene3D G3DSA:3.30.230.10 1 117 2.3E-40 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_0004 bd8ffd190be5487739ca370e6721dcc0 117 SUPERFAMILY SSF54211 5 113 2.48E-29 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_0004 bd8ffd190be5487739ca370e6721dcc0 117 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 5 114 17.606 T 10-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 VF_0004 bd8ffd190be5487739ca370e6721dcc0 117 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 15 104 2.0E-46 T 10-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 VF_0004 bd8ffd190be5487739ca370e6721dcc0 117 Pfam PF00825 Ribonuclease P 5 111 3.8E-32 T 10-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 VF_0004 bd8ffd190be5487739ca370e6721dcc0 117 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 5 112 1.1E-27 T 10-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 VF_0004 bd8ffd190be5487739ca370e6721dcc0 117 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 55 69 - T 10-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 VF_1548 8e986a9d29b8117cebc038c24cf356a1 149 Pfam PF03918 Cytochrome C biogenesis protein 39 149 1.6E-42 T 10-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family VF_1548 8e986a9d29b8117cebc038c24cf356a1 149 TIGRFAM TIGR03147 cyt_nit_nrfF: cytochrome c nitrite reductase, accessory protein NrfF 36 147 1.8E-50 T 10-10-2018 IPR017565 Formate-dependent nitrite reductase complex, subunit NrfF VF_1548 8e986a9d29b8117cebc038c24cf356a1 149 Gene3D G3DSA:1.10.8.640 40 126 1.3E-33 T 10-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily VF_1405 9dee588c04329011b46ec32c58203a45 194 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 5 190 27.014 T 10-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 VF_1405 9dee588c04329011b46ec32c58203a45 194 SUPERFAMILY SSF53448 10 188 5.22E-29 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_1405 9dee588c04329011b46ec32c58203a45 194 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 8 187 6.1E-64 T 10-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 VF_1405 9dee588c04329011b46ec32c58203a45 194 Gene3D G3DSA:3.90.550.10 3 192 1.3E-47 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_1405 9dee588c04329011b46ec32c58203a45 194 Pfam PF12804 MobA-like NTP transferase domain 10 158 4.7E-28 T 10-10-2018 IPR025877 MobA-like NTP transferase VF_1049 eb943ac5c02bcf6c90a42e024d6e6eb1 285 Pfam PF01555 DNA methylase 4 278 3.0E-32 T 10-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 VF_1049 eb943ac5c02bcf6c90a42e024d6e6eb1 285 SUPERFAMILY SSF53335 2 284 6.62E-39 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_1049 eb943ac5c02bcf6c90a42e024d6e6eb1 285 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 241 259 7.9E-21 T 10-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 VF_1049 eb943ac5c02bcf6c90a42e024d6e6eb1 285 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 264 284 7.9E-21 T 10-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 VF_1049 eb943ac5c02bcf6c90a42e024d6e6eb1 285 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 222 239 7.9E-21 T 10-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 VF_1049 eb943ac5c02bcf6c90a42e024d6e6eb1 285 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 1 20 7.9E-21 T 10-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 VF_2214 efaa55cc8d2de4843ca9808fb9696841 195 Pfam PF04972 BON domain 122 187 5.3E-13 T 10-10-2018 IPR007055 BON domain VF_2214 efaa55cc8d2de4843ca9808fb9696841 195 Pfam PF04972 BON domain 67 113 4.4E-7 T 10-10-2018 IPR007055 BON domain VF_1615 19b548695fb9457fa24d3d76d860d4cd 210 SUPERFAMILY SSF56925 32 210 1.23E-14 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VF_1615 19b548695fb9457fa24d3d76d860d4cd 210 Pfam PF13505 Outer membrane protein beta-barrel domain 19 210 5.0E-18 T 10-10-2018 IPR027385 Outer membrane protein beta-barrel VF_1615 19b548695fb9457fa24d3d76d860d4cd 210 Gene3D G3DSA:2.40.160.20 32 210 2.5E-12 T 10-10-2018 VF_1627 b1743b5bb8ecebc3d0246b4df611c2ce 214 SUPERFAMILY SSF46894 135 210 1.05E-18 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_1627 b1743b5bb8ecebc3d0246b4df611c2ce 214 SMART SM00448 2 115 1.6E-30 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1627 b1743b5bb8ecebc3d0246b4df611c2ce 214 Gene3D G3DSA:3.40.50.12740 2 209 7.5E-61 T 10-10-2018 VF_1627 b1743b5bb8ecebc3d0246b4df611c2ce 214 SUPERFAMILY SSF52172 2 132 6.97E-35 T 10-10-2018 IPR011006 CheY-like superfamily VF_1627 b1743b5bb8ecebc3d0246b4df611c2ce 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_1627 b1743b5bb8ecebc3d0246b4df611c2ce 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 2.0E-10 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_1627 b1743b5bb8ecebc3d0246b4df611c2ce 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 2.0E-10 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_1627 b1743b5bb8ecebc3d0246b4df611c2ce 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 2.0E-10 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_1627 b1743b5bb8ecebc3d0246b4df611c2ce 214 SMART SM00421 146 203 1.8E-16 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_1627 b1743b5bb8ecebc3d0246b4df611c2ce 214 Pfam PF00072 Response regulator receiver domain 4 116 2.5E-31 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1627 b1743b5bb8ecebc3d0246b4df611c2ce 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 1.2E-18 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_0845 5e3056edf6e520fc5f7535da6aa48068 265 SUPERFAMILY SSF69593 27 234 1.16E-26 T 10-10-2018 VF_0845 5e3056edf6e520fc5f7535da6aa48068 265 Pfam PF01553 Acyltransferase 77 194 3.2E-17 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VF_0845 5e3056edf6e520fc5f7535da6aa48068 265 SMART SM00563 89 199 2.3E-16 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VF_A0343 bf00480d171e51f9ee818d1911496c46 442 Gene3D G3DSA:3.30.70.270 293 442 5.3E-42 T 10-10-2018 VF_A0343 bf00480d171e51f9ee818d1911496c46 442 Pfam PF00990 Diguanylate cyclase, GGDEF domain 295 436 4.8E-35 T 10-10-2018 IPR000160 GGDEF domain VF_A0343 bf00480d171e51f9ee818d1911496c46 442 SMART SM00267 282 440 1.2E-41 T 10-10-2018 IPR000160 GGDEF domain VF_A0343 bf00480d171e51f9ee818d1911496c46 442 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 293 440 1.6E-37 T 10-10-2018 IPR000160 GGDEF domain VF_A0343 bf00480d171e51f9ee818d1911496c46 442 SUPERFAMILY SSF55073 298 441 4.24E-36 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0276 6452ec9eeeac938e489dd42210a1dd56 411 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 122 245 5.0E-9 T 10-10-2018 IPR000014 PAS domain VF_A0276 6452ec9eeeac938e489dd42210a1dd56 411 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 11 119 2.8E-6 T 10-10-2018 IPR000014 PAS domain VF_A0276 6452ec9eeeac938e489dd42210a1dd56 411 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 246 407 5.6E-44 T 10-10-2018 IPR000160 GGDEF domain VF_A0276 6452ec9eeeac938e489dd42210a1dd56 411 Gene3D G3DSA:3.30.70.270 248 409 2.8E-50 T 10-10-2018 VF_A0276 6452ec9eeeac938e489dd42210a1dd56 411 SUPERFAMILY SSF55785 115 237 1.76E-8 T 10-10-2018 IPR035965 PAS domain superfamily VF_A0276 6452ec9eeeac938e489dd42210a1dd56 411 SUPERFAMILY SSF55785 13 111 1.19E-7 T 10-10-2018 IPR035965 PAS domain superfamily VF_A0276 6452ec9eeeac938e489dd42210a1dd56 411 Gene3D G3DSA:3.30.450.20 114 247 2.2E-8 T 10-10-2018 VF_A0276 6452ec9eeeac938e489dd42210a1dd56 411 SUPERFAMILY SSF55073 255 407 2.43E-43 T 10-10-2018 IPR029787 Nucleotide cyclase VF_A0276 6452ec9eeeac938e489dd42210a1dd56 411 Gene3D G3DSA:3.30.450.20 11 113 3.6E-6 T 10-10-2018 VF_A0276 6452ec9eeeac938e489dd42210a1dd56 411 Pfam PF00990 Diguanylate cyclase, GGDEF domain 250 405 1.1E-41 T 10-10-2018 IPR000160 GGDEF domain VF_A0276 6452ec9eeeac938e489dd42210a1dd56 411 Pfam PF13426 PAS domain 12 111 0.18 T 10-10-2018 IPR000014 PAS domain VF_A0276 6452ec9eeeac938e489dd42210a1dd56 411 Pfam PF13426 PAS domain 138 238 0.12 T 10-10-2018 IPR000014 PAS domain VF_A0276 6452ec9eeeac938e489dd42210a1dd56 411 SMART SM00267 239 409 9.8E-47 T 10-10-2018 IPR000160 GGDEF domain VF_1595 6723aa05dc2449cac40f1551c2ac773a 300 Gene3D G3DSA:1.10.3720.10 92 296 1.5E-19 T 10-10-2018 IPR035906 MetI-like superfamily VF_1595 6723aa05dc2449cac40f1551c2ac773a 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 24 74 1.7E-14 T 10-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VF_1595 6723aa05dc2449cac40f1551c2ac773a 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 298 3.6E-28 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_1595 6723aa05dc2449cac40f1551c2ac773a 300 SUPERFAMILY SSF161098 96 281 1.57E-26 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0023 dc9e7117cf5b5799a8edc32395aaa87e 270 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 233 3.3E-32 T 10-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 VF_A0023 dc9e7117cf5b5799a8edc32395aaa87e 270 SUPERFAMILY SSF52096 2 245 1.99E-45 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VF_A0023 dc9e7117cf5b5799a8edc32395aaa87e 270 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 96 116 - T 10-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 VF_A0023 dc9e7117cf5b5799a8edc32395aaa87e 270 Gene3D G3DSA:3.90.226.10 1 270 7.6E-54 T 10-10-2018 VF_A0975 fea880fd4a92d8941576576c086639db 178 SUPERFAMILY SSF89028 10 170 9.02E-33 T 10-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VF_A0975 fea880fd4a92d8941576576c086639db 178 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 30 149 2.0E-21 T 10-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VF_A0975 fea880fd4a92d8941576576c086639db 178 Gene3D G3DSA:1.20.1200.10 19 173 1.9E-20 T 10-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VF_A0975 fea880fd4a92d8941576576c086639db 178 Pfam PF01923 Cobalamin adenosyltransferase 30 157 1.6E-12 T 10-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VF_1116 a0a9bb8dbca3afdcb84555893e7f7807 426 Gene3D G3DSA:1.10.10.10 3 113 4.8E-15 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1116 a0a9bb8dbca3afdcb84555893e7f7807 426 SUPERFAMILY SSF46894 5 95 3.12E-13 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_1116 a0a9bb8dbca3afdcb84555893e7f7807 426 Pfam PF00486 Transcriptional regulatory protein, C terminal 29 94 7.0E-12 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_1116 a0a9bb8dbca3afdcb84555893e7f7807 426 SMART SM00862 21 95 5.4E-9 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_2073 57aafc085937c155b03cc5d3d1fabfe6 238 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 106 113 - T 10-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 VF_2073 57aafc085937c155b03cc5d3d1fabfe6 238 SUPERFAMILY SSF53448 9 231 4.43E-60 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_2073 57aafc085937c155b03cc5d3d1fabfe6 238 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 11 230 3.8E-73 T 10-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 VF_2073 57aafc085937c155b03cc5d3d1fabfe6 238 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 9 231 6.3E-77 T 10-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 VF_2073 57aafc085937c155b03cc5d3d1fabfe6 238 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 8 230 41.002 T 10-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 VF_2073 57aafc085937c155b03cc5d3d1fabfe6 238 Gene3D G3DSA:3.90.550.10 4 237 3.2E-73 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_A0180 363d8eaef010fafdc401300a515cc9c8 141 PIRSF PIRSF028299 18 141 1.2E-31 T 10-10-2018 IPR016879 Uncharacterised conserved protein UCP028299 VF_A0180 363d8eaef010fafdc401300a515cc9c8 141 Pfam PF11777 Protein of unknown function (DUF3316) 21 135 6.5E-19 T 10-10-2018 IPR016879 Uncharacterised conserved protein UCP028299 VF_1909 c8334b148086e1a7eaf8af94d0c37ca6 203 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_1909 c8334b148086e1a7eaf8af94d0c37ca6 203 SMART SM00421 143 200 4.0E-21 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_1909 c8334b148086e1a7eaf8af94d0c37ca6 203 Gene3D G3DSA:3.40.50.12740 3 203 3.5E-63 T 10-10-2018 VF_1909 c8334b148086e1a7eaf8af94d0c37ca6 203 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 198 3.8E-22 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_1909 c8334b148086e1a7eaf8af94d0c37ca6 203 SMART SM00448 2 115 6.5E-33 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1909 c8334b148086e1a7eaf8af94d0c37ca6 203 SUPERFAMILY SSF52172 1 129 4.27E-34 T 10-10-2018 IPR011006 CheY-like superfamily VF_1909 c8334b148086e1a7eaf8af94d0c37ca6 203 SUPERFAMILY SSF46894 132 201 3.33E-20 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_1909 c8334b148086e1a7eaf8af94d0c37ca6 203 Pfam PF00072 Response regulator receiver domain 4 115 1.8E-30 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VF_1909 c8334b148086e1a7eaf8af94d0c37ca6 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 3.0E-14 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_1909 c8334b148086e1a7eaf8af94d0c37ca6 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 3.0E-14 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_1909 c8334b148086e1a7eaf8af94d0c37ca6 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 3.0E-14 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VF_1064 665535e27df6617738f326ab002d6f69 464 Gene3D G3DSA:3.90.1150.160 358 463 3.9E-32 T 10-10-2018 VF_1064 665535e27df6617738f326ab002d6f69 464 SUPERFAMILY SSF53383 5 447 4.11E-143 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_1064 665535e27df6617738f326ab002d6f69 464 TIGRFAM TIGR01788 Glu-decarb-GAD: glutamate decarboxylase 18 443 5.0E-200 T 10-10-2018 IPR010107 Glutamate decarboxylase GO:0004351|GO:0006536|GO:0030170 KEGG: 00250+4.1.1.15|KEGG: 00410+4.1.1.15|KEGG: 00430+4.1.1.15|KEGG: 00650+4.1.1.15|MetaCyc: PWY-4321 VF_1064 665535e27df6617738f326ab002d6f69 464 Gene3D G3DSA:3.40.640.10 66 357 2.1E-85 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_1064 665535e27df6617738f326ab002d6f69 464 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 39 378 1.1E-90 T 10-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 VF_0974 11f52c19ae01772f9519ec78fbb0a7b2 599 Gene3D G3DSA:3.40.50.300 327 583 9.2E-74 T 10-10-2018 VF_0974 11f52c19ae01772f9519ec78fbb0a7b2 599 Gene3D G3DSA:1.20.1560.10 1 322 2.3E-67 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_0974 11f52c19ae01772f9519ec78fbb0a7b2 599 SMART SM00382 362 548 6.3E-16 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0974 11f52c19ae01772f9519ec78fbb0a7b2 599 ProSitePatterns PS00211 ABC transporters family signature. 475 489 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0974 11f52c19ae01772f9519ec78fbb0a7b2 599 SUPERFAMILY SSF90123 6 320 4.19E-65 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VF_0974 11f52c19ae01772f9519ec78fbb0a7b2 599 Pfam PF00005 ABC transporter 353 502 2.8E-28 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0974 11f52c19ae01772f9519ec78fbb0a7b2 599 Pfam PF00664 ABC transporter transmembrane region 19 291 2.9E-38 T 10-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VF_0974 11f52c19ae01772f9519ec78fbb0a7b2 599 SUPERFAMILY SSF52540 329 573 1.2E-73 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1449 0d2484e92dc852483c059058937a2dc7 335 Gene3D G3DSA:3.40.50.2300 161 290 3.2E-86 T 10-10-2018 VF_1449 0d2484e92dc852483c059058937a2dc7 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 10-10-2018 VF_1449 0d2484e92dc852483c059058937a2dc7 335 SUPERFAMILY SSF53822 60 331 7.85E-93 T 10-10-2018 IPR028082 Periplasmic binding protein-like I VF_1449 0d2484e92dc852483c059058937a2dc7 335 Pfam PF13377 Periplasmic binding protein-like domain 170 330 4.4E-40 T 10-10-2018 VF_1449 0d2484e92dc852483c059058937a2dc7 335 SUPERFAMILY SSF47413 1 59 4.82E-17 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_1449 0d2484e92dc852483c059058937a2dc7 335 SMART SM00354 1 71 2.4E-33 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_1449 0d2484e92dc852483c059058937a2dc7 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.6E-18 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_1449 0d2484e92dc852483c059058937a2dc7 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.7E-5 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_1449 0d2484e92dc852483c059058937a2dc7 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.7E-5 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_1449 0d2484e92dc852483c059058937a2dc7 335 Gene3D G3DSA:3.40.50.2300 69 322 3.2E-86 T 10-10-2018 VF_1449 0d2484e92dc852483c059058937a2dc7 335 Gene3D G3DSA:1.10.260.40 3 59 2.7E-23 T 10-10-2018 VF_1818 279d90f221c018f418a9b9097ecfca8a 183 Gene3D G3DSA:3.40.30.10 19 183 2.3E-46 T 10-10-2018 VF_1818 279d90f221c018f418a9b9097ecfca8a 183 ProSitePatterns PS00194 Thioredoxin family active site. 71 89 - T 10-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VF_1818 279d90f221c018f418a9b9097ecfca8a 183 SUPERFAMILY SSF52833 46 178 1.36E-38 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1818 279d90f221c018f418a9b9097ecfca8a 183 Pfam PF08534 Redoxin 41 164 1.9E-28 T 10-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 VF_1818 279d90f221c018f418a9b9097ecfca8a 183 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 7 176 7.9E-71 T 10-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 VF_A0674 5a93a043caed9f221a1716ca704b7aa2 182 Gene3D G3DSA:2.40.160.20 21 182 7.4E-9 T 10-10-2018 VF_A0674 5a93a043caed9f221a1716ca704b7aa2 182 Pfam PF13505 Outer membrane protein beta-barrel domain 9 182 1.3E-21 T 10-10-2018 IPR027385 Outer membrane protein beta-barrel VF_A0674 5a93a043caed9f221a1716ca704b7aa2 182 SUPERFAMILY SSF56925 38 182 8.89E-13 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VF_1877 645b2dc7dfb420c8691d1f9c1bfe29ca 131 PIRSF PIRSF002889 1 131 1.8E-36 T 10-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 VF_1877 645b2dc7dfb420c8691d1f9c1bfe29ca 131 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 5 129 5.6E-31 T 10-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 VF_A0915 090fbc87fdaf1204d6d98b28b5169f4a 183 SMART SM01266 4 56 1.4E-10 T 10-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VF_A0915 090fbc87fdaf1204d6d98b28b5169f4a 183 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 127 161 2.4E-7 T 10-10-2018 IPR001451 Hexapeptide repeat VF_A0915 090fbc87fdaf1204d6d98b28b5169f4a 183 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 135 163 - T 10-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VF_A0915 090fbc87fdaf1204d6d98b28b5169f4a 183 SUPERFAMILY SSF51161 2 181 8.46E-42 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_A0915 090fbc87fdaf1204d6d98b28b5169f4a 183 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 91 103 0.085 T 10-10-2018 IPR001451 Hexapeptide repeat VF_A0915 090fbc87fdaf1204d6d98b28b5169f4a 183 Gene3D G3DSA:2.160.10.10 1 183 3.9E-61 T 10-10-2018 VF_A0915 090fbc87fdaf1204d6d98b28b5169f4a 183 Pfam PF12464 Maltose acetyltransferase 6 52 6.8E-9 T 10-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VF_0680 e9ce8e6a392de1c0f560ce875b61267b 331 Gene3D G3DSA:1.10.3720.10 97 326 1.5E-16 T 10-10-2018 IPR035906 MetI-like superfamily VF_0680 e9ce8e6a392de1c0f560ce875b61267b 331 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 126 325 6.5E-30 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_0680 e9ce8e6a392de1c0f560ce875b61267b 331 SUPERFAMILY SSF161098 102 313 1.23E-14 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0601 1e345a215c2cc7672cdc799b1756698c 170 SUPERFAMILY SSF52374 1 169 1.69E-30 T 10-10-2018 VF_A0601 1e345a215c2cc7672cdc799b1756698c 170 Pfam PF01467 Cytidylyltransferase-like 6 143 1.2E-8 T 10-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VF_A0601 1e345a215c2cc7672cdc799b1756698c 170 Gene3D G3DSA:3.40.50.620 1 170 1.5E-48 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0296 37ce24e0e821c2ab980b8667f7191fb0 214 Gene3D G3DSA:1.10.357.10 1 211 1.5E-56 T 10-10-2018 VF_0296 37ce24e0e821c2ab980b8667f7191fb0 214 SUPERFAMILY SSF46689 6 82 8.21E-15 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_0296 37ce24e0e821c2ab980b8667f7191fb0 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 63 5.7E-10 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_A0079 b00feea8e29662ce8cef5569d5dbf781 174 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 28 2.0E-6 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_A0079 b00feea8e29662ce8cef5569d5dbf781 174 SUPERFAMILY SSF54523 9 164 8.63E-11 T 10-10-2018 VF_A0079 b00feea8e29662ce8cef5569d5dbf781 174 Gene3D G3DSA:3.30.700.10 9 168 4.2E-6 T 10-10-2018 VF_A0079 b00feea8e29662ce8cef5569d5dbf781 174 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 28 1.2E-6 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_A0529 dd01868c8d08d015343880606f9ac309 244 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 25 232 2.4E-54 T 10-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 VF_A0529 dd01868c8d08d015343880606f9ac309 244 Pfam PF04973 Nicotinamide mononucleotide transporter 25 228 2.1E-52 T 10-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 SMART SM00493 1 123 2.6E-23 T 10-10-2018 IPR006171 TOPRIM domain VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 Pfam PF01131 DNA topoisomerase 158 583 2.4E-123 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 311 320 1.4E-21 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 395 411 1.4E-21 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 512 526 1.4E-21 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 192 210 1.4E-21 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 97 110 1.4E-21 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 Gene3D G3DSA:1.10.460.10 161 593 2.6E-152 T 10-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 Gene3D G3DSA:3.40.50.140 1 154 5.4E-54 T 10-10-2018 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 SMART SM00436 127 222 2.2E-26 T 10-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 Gene3D G3DSA:1.10.290.10 277 409 2.6E-152 T 10-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 Gene3D G3DSA:2.70.20.10 216 479 2.6E-152 T 10-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 656 2.5E-203 T 10-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 305 320 - T 10-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 Pfam PF01751 Toprim domain 3 131 5.8E-13 T 10-10-2018 IPR006171 TOPRIM domain VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 SMART SM00437 268 549 1.0E-66 T 10-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 VF_B0046 b057460eb2e72be4fee3758fcab2c09a 664 SUPERFAMILY SSF56712 1 598 4.45E-170 T 10-10-2018 IPR023405 DNA topoisomerase, type IA, core domain VF_1657 70e63444f905260b4ea51604ad89316c 279 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 11 94 2.0E-7 T 10-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain VF_1657 70e63444f905260b4ea51604ad89316c 279 Gene3D G3DSA:2.60.120.330 1 279 5.1E-92 T 10-10-2018 IPR027443 Isopenicillin N synthase-like VF_1657 70e63444f905260b4ea51604ad89316c 279 SUPERFAMILY SSF51197 6 276 1.03E-58 T 10-10-2018 VF_1657 70e63444f905260b4ea51604ad89316c 279 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 152 253 8.7E-16 T 10-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 VF_1319 f70028de028457325a0cc768ac52f17d 347 Gene3D G3DSA:3.40.190.10 131 320 2.5E-122 T 10-10-2018 VF_1319 f70028de028457325a0cc768ac52f17d 347 SUPERFAMILY SSF53850 26 344 4.79E-95 T 10-10-2018 VF_1319 f70028de028457325a0cc768ac52f17d 347 Pfam PF13416 Bacterial extracellular solute-binding protein 42 313 3.5E-41 T 10-10-2018 IPR006059 Bacterial extracellular solute-binding protein VF_1319 f70028de028457325a0cc768ac52f17d 347 PIRSF PIRSF019574 1 347 7.2E-126 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1319 f70028de028457325a0cc768ac52f17d 347 Gene3D G3DSA:3.40.190.10 31 314 2.5E-122 T 10-10-2018 VF_1319 f70028de028457325a0cc768ac52f17d 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 32 48 6.6E-84 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1319 f70028de028457325a0cc768ac52f17d 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 292 318 6.6E-84 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1319 f70028de028457325a0cc768ac52f17d 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 48 69 6.6E-84 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1319 f70028de028457325a0cc768ac52f17d 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 75 89 6.6E-84 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1319 f70028de028457325a0cc768ac52f17d 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 91 104 6.6E-84 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1319 f70028de028457325a0cc768ac52f17d 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 203 222 6.6E-84 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1319 f70028de028457325a0cc768ac52f17d 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 122 138 6.6E-84 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1319 f70028de028457325a0cc768ac52f17d 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 148 162 6.6E-84 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1319 f70028de028457325a0cc768ac52f17d 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 166 185 6.6E-84 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_1319 f70028de028457325a0cc768ac52f17d 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 247 266 6.6E-84 T 10-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VF_A1120 bdeeadd8664423fd8939f5beaa898177 212 Gene3D G3DSA:1.20.950.20 1 160 9.5E-18 T 10-10-2018 VF_A1120 bdeeadd8664423fd8939f5beaa898177 212 SUPERFAMILY SSF81342 2 172 2.62E-36 T 10-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 VF_A1120 bdeeadd8664423fd8939f5beaa898177 212 Pfam PF01292 Prokaryotic cytochrome b561 4 170 1.0E-24 T 10-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 VF_A1135 1205cfc4b584dda1ee0ba47837ea089e 92 Pfam PF11747 Killing trait 13 79 1.9E-29 T 10-10-2018 IPR021070 Killing trait, RebB VF_A1084 8f14a7ce6099ea01fdfe7c989d0be701 624 Pfam PF02743 Cache domain 54 253 6.2E-21 T 10-10-2018 IPR033479 Double Cache domain 1 VF_A1084 8f14a7ce6099ea01fdfe7c989d0be701 624 SMART SM00283 361 622 1.7E-66 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_A1084 8f14a7ce6099ea01fdfe7c989d0be701 624 Gene3D G3DSA:3.30.450.20 62 169 3.5E-21 T 10-10-2018 VF_A1084 8f14a7ce6099ea01fdfe7c989d0be701 624 SUPERFAMILY SSF58104 337 623 1.66E-63 T 10-10-2018 VF_A1084 8f14a7ce6099ea01fdfe7c989d0be701 624 Gene3D G3DSA:1.10.287.950 306 622 9.3E-60 T 10-10-2018 VF_A1084 8f14a7ce6099ea01fdfe7c989d0be701 624 Gene3D G3DSA:3.30.450.20 55 255 3.5E-21 T 10-10-2018 VF_A1084 8f14a7ce6099ea01fdfe7c989d0be701 624 SUPERFAMILY SSF103190 93 176 6.28E-10 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_A1084 8f14a7ce6099ea01fdfe7c989d0be701 624 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 424 585 1.1E-39 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0799 dce73fd7d2bac1928c958328e4df5fa0 98 Pfam PF00216 Bacterial DNA-binding protein 9 98 1.8E-34 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_0799 dce73fd7d2bac1928c958328e4df5fa0 98 PRINTS PR01727 Prokaryotic integration host factor signature 48 63 1.6E-20 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_0799 dce73fd7d2bac1928c958328e4df5fa0 98 PRINTS PR01727 Prokaryotic integration host factor signature 66 79 1.6E-20 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_0799 dce73fd7d2bac1928c958328e4df5fa0 98 PRINTS PR01727 Prokaryotic integration host factor signature 82 96 1.6E-20 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_0799 dce73fd7d2bac1928c958328e4df5fa0 98 SUPERFAMILY SSF47729 9 98 5.3E-33 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VF_0799 dce73fd7d2bac1928c958328e4df5fa0 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 54 73 - T 10-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 VF_0799 dce73fd7d2bac1928c958328e4df5fa0 98 Gene3D G3DSA:4.10.520.10 9 98 1.9E-36 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VF_0799 dce73fd7d2bac1928c958328e4df5fa0 98 SMART SM00411 9 98 4.7E-45 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VF_0142 e2fc9a90d887fcb15979cfe3c8ab3269 394 SUPERFAMILY SSF53756 8 379 1.07E-95 T 10-10-2018 VF_0142 e2fc9a90d887fcb15979cfe3c8ab3269 394 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 29 375 7.9E-93 T 10-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VF_0142 e2fc9a90d887fcb15979cfe3c8ab3269 394 Gene3D G3DSA:3.40.50.2000 9 372 2.6E-89 T 10-10-2018 VF_0142 e2fc9a90d887fcb15979cfe3c8ab3269 394 Gene3D G3DSA:3.40.50.2000 195 361 2.6E-89 T 10-10-2018 VF_0142 e2fc9a90d887fcb15979cfe3c8ab3269 394 TIGRFAM TIGR03568 NeuC_NnaA: UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing 8 374 1.5E-144 T 10-10-2018 IPR020004 UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing GO:0004553|GO:0006047 Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VF_0102 ae87a751fe77fd1b3d3a139bd1cb6a91 299 SUPERFAMILY SSF55729 2 156 2.74E-32 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_0102 ae87a751fe77fd1b3d3a139bd1cb6a91 299 SUPERFAMILY SSF54637 154 298 1.08E-37 T 10-10-2018 IPR029069 HotDog domain superfamily VF_0102 ae87a751fe77fd1b3d3a139bd1cb6a91 299 Pfam PF13673 Acetyltransferase (GNAT) domain 47 143 1.3E-13 T 10-10-2018 IPR000182 GNAT domain VF_0102 ae87a751fe77fd1b3d3a139bd1cb6a91 299 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 164 297 7.1E-43 T 10-10-2018 IPR012660 Thioesterase, putative VF_0102 ae87a751fe77fd1b3d3a139bd1cb6a91 299 Gene3D G3DSA:3.40.630.30 2 145 1.2E-28 T 10-10-2018 VF_0102 ae87a751fe77fd1b3d3a139bd1cb6a91 299 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 157 297 1.2E-49 T 10-10-2018 IPR012660 Thioesterase, putative VF_0102 ae87a751fe77fd1b3d3a139bd1cb6a91 299 Gene3D G3DSA:3.10.129.10 148 298 7.8E-41 T 10-10-2018 VF_1096 eb8797d83343b52d05ac8332b3ec9ced 401 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 191 398 6.1E-69 T 10-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 VF_1096 eb8797d83343b52d05ac8332b3ec9ced 401 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 5 78 1.2E-23 T 10-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 VF_1096 eb8797d83343b52d05ac8332b3ec9ced 401 Pfam PF07670 Nucleoside recognition 89 184 8.7E-7 T 10-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VF_1096 eb8797d83343b52d05ac8332b3ec9ced 401 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 1 397 4.6E-134 T 10-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 VF_A0817 e364e9825c1a23ce243c9a35d62a4b54 186 SUPERFAMILY SSF52833 28 183 3.57E-37 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_A0817 e364e9825c1a23ce243c9a35d62a4b54 186 Pfam PF02630 SCO1/SenC 41 165 3.0E-31 T 10-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_A0817 e364e9825c1a23ce243c9a35d62a4b54 186 Gene3D G3DSA:3.40.30.10 20 186 1.2E-38 T 10-10-2018 VF_A0304 cd2bb38989a4e171a2461b41a5735942 375 Pfam PF00486 Transcriptional regulatory protein, C terminal 28 99 3.9E-13 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0304 cd2bb38989a4e171a2461b41a5735942 375 SMART SM00862 27 100 1.1E-9 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0304 cd2bb38989a4e171a2461b41a5735942 375 SUPERFAMILY SSF46894 7 99 9.07E-15 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_A0304 cd2bb38989a4e171a2461b41a5735942 375 Gene3D G3DSA:1.10.10.10 1 101 8.3E-18 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2292 801e00214c0a155b79bffc1ec36ed8ef 172 Gene3D G3DSA:3.40.50.300 1 171 4.8E-55 T 10-10-2018 VF_2292 801e00214c0a155b79bffc1ec36ed8ef 172 SUPERFAMILY SSF52540 4 169 7.84E-32 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2292 801e00214c0a155b79bffc1ec36ed8ef 172 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 10-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 VF_2292 801e00214c0a155b79bffc1ec36ed8ef 172 PRINTS PR01100 Shikimate kinase family signature 77 86 3.4E-29 T 10-10-2018 VF_2292 801e00214c0a155b79bffc1ec36ed8ef 172 PRINTS PR01100 Shikimate kinase family signature 7 22 3.4E-29 T 10-10-2018 VF_2292 801e00214c0a155b79bffc1ec36ed8ef 172 PRINTS PR01100 Shikimate kinase family signature 98 115 3.4E-29 T 10-10-2018 VF_2292 801e00214c0a155b79bffc1ec36ed8ef 172 PRINTS PR01100 Shikimate kinase family signature 31 44 3.4E-29 T 10-10-2018 VF_2292 801e00214c0a155b79bffc1ec36ed8ef 172 PRINTS PR01100 Shikimate kinase family signature 59 67 3.4E-29 T 10-10-2018 VF_2292 801e00214c0a155b79bffc1ec36ed8ef 172 Pfam PF01202 Shikimate kinase 13 169 7.2E-56 T 10-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 VF_2292 801e00214c0a155b79bffc1ec36ed8ef 172 Hamap MF_00109 Shikimate kinase [aroK]. 4 170 29.243 T 10-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 VF_B0016 8ba9d45109addb0624b4c798c30e9344 76 SUPERFAMILY SSF54857 1 75 3.53E-21 T 10-10-2018 IPR036687 DinI-like superfamily VF_B0016 8ba9d45109addb0624b4c798c30e9344 76 Gene3D G3DSA:3.30.910.10 1 76 8.0E-16 T 10-10-2018 IPR036687 DinI-like superfamily VF_B0016 8ba9d45109addb0624b4c798c30e9344 76 Pfam PF06183 DinI-like family 19 74 1.7E-14 T 10-10-2018 IPR010391 DNA damage-inducible protein DinI-like VF_A0709 1f2e3a41a79e6b1dccabd6c55a946901 633 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 163 246 9.8E-30 T 10-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 VF_A0709 1f2e3a41a79e6b1dccabd6c55a946901 633 SUPERFAMILY SSF52794 162 258 8.37E-34 T 10-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VF_A0709 1f2e3a41a79e6b1dccabd6c55a946901 633 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 147 5.2E-35 T 10-10-2018 IPR002178 PTS EIIA type-2 domain VF_A0709 1f2e3a41a79e6b1dccabd6c55a946901 633 Gene3D G3DSA:3.40.50.2300 149 261 7.2E-38 T 10-10-2018 VF_A0709 1f2e3a41a79e6b1dccabd6c55a946901 633 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 165 253 1.8E-14 T 10-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VF_A0709 1f2e3a41a79e6b1dccabd6c55a946901 633 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 5 131 6.7E-41 T 10-10-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 VF_A0709 1f2e3a41a79e6b1dccabd6c55a946901 633 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 272 617 1.6E-86 T 10-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 VF_A0709 1f2e3a41a79e6b1dccabd6c55a946901 633 SUPERFAMILY SSF55804 1 146 2.62E-37 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0709 1f2e3a41a79e6b1dccabd6c55a946901 633 Gene3D G3DSA:3.40.930.10 1 147 4.3E-40 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_1029 b33214f87ddb90d2a5cf85269c0db020 470 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 272 465 7.8E-52 T 10-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 VF_1029 b33214f87ddb90d2a5cf85269c0db020 470 SUPERFAMILY SSF51366 272 468 2.98E-53 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VF_1029 b33214f87ddb90d2a5cf85269c0db020 470 Gene3D G3DSA:3.20.20.70 271 464 5.1E-177 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1029 b33214f87ddb90d2a5cf85269c0db020 470 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 65 83 - T 10-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 VF_1029 b33214f87ddb90d2a5cf85269c0db020 470 Pfam PF00218 Indole-3-glycerol phosphate synthase 21 266 9.8E-97 T 10-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 VF_1029 b33214f87ddb90d2a5cf85269c0db020 470 Gene3D G3DSA:3.20.20.70 23 270 5.1E-177 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1029 b33214f87ddb90d2a5cf85269c0db020 470 SUPERFAMILY SSF51366 27 268 2.0E-83 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VF_1029 b33214f87ddb90d2a5cf85269c0db020 470 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 18 269 35.243 T 10-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 VF_1029 b33214f87ddb90d2a5cf85269c0db020 470 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 270 470 29.738 T 10-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 VF_2007 2310be087e8e6b3ce1cb38f43b1905b4 121 Pfam PF10618 Phage tail tube protein 4 118 5.3E-34 T 10-10-2018 IPR019596 Bacteriophage Mu, GpM, tail tube VF_2457 3d35da379223048cb012856748c07345 80 Pfam PF10678 Protein of unknown function (DUF2492) 3 79 6.3E-30 T 10-10-2018 IPR019620 Putative metal-binding protein VF_2457 3d35da379223048cb012856748c07345 80 TIGRFAM TIGR03853 matur_matur: putative metal-binding protein 4 80 4.7E-31 T 10-10-2018 IPR019620 Putative metal-binding protein VF_A0520 27fc2e1aa52d87d0bd7076303117a5ce 155 Gene3D G3DSA:3.10.450.430 8 155 4.1E-55 T 10-10-2018 VF_A0520 27fc2e1aa52d87d0bd7076303117a5ce 155 Pfam PF10980 Protein of unknown function (DUF2787) 23 152 2.3E-48 T 10-10-2018 IPR021248 Protein of unknown function DUF2787 VF_A0965 2d890d819de2798dc49ea49dba9f3f28 265 SUPERFAMILY SSF55469 26 264 2.88E-73 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VF_A0965 2d890d819de2798dc49ea49dba9f3f28 265 PIRSF PIRSF005426 25 265 2.9E-81 T 10-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 VF_A0965 2d890d819de2798dc49ea49dba9f3f28 265 Pfam PF00881 Nitroreductase family 36 184 1.1E-20 T 10-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 VF_A0965 2d890d819de2798dc49ea49dba9f3f28 265 Gene3D G3DSA:3.40.109.10 26 265 2.7E-74 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VF_1286 609719d8a7b580b411a19b3d8aae0a95 207 Pfam PF07126 Cell-division protein ZapC 28 196 7.2E-68 T 10-10-2018 IPR009809 Cell division protein ZapC VF_1286 609719d8a7b580b411a19b3d8aae0a95 207 Hamap MF_00906 Cell division protein ZapC [zapC]. 28 205 40.792 T 10-10-2018 IPR009809 Cell division protein ZapC VF_1286 609719d8a7b580b411a19b3d8aae0a95 207 PIRSF PIRSF010252 27 206 3.7E-75 T 10-10-2018 IPR009809 Cell division protein ZapC VF_2479 7975d1a6f217cc79c5a4f7fc031a8665 652 Pfam PF05170 AsmA family 1 599 5.6E-65 T 10-10-2018 IPR007844 AsmA VF_1121 f9a291e17a273df2d0ee91a9ad955b66 650 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 13 502 1.7E-155 T 10-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VF_1121 f9a291e17a273df2d0ee91a9ad955b66 650 ProSitePatterns PS01303 BCCT family of transporters signature. 321 330 - T 10-10-2018 IPR018093 BCCT transporter, conserved site VF_1121 f9a291e17a273df2d0ee91a9ad955b66 650 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 50 502 2.3E-146 T 10-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VF_A0363 d176f97157b6110f25ec61f81e80368e 502 Pfam PF01235 Sodium:alanine symporter family 50 472 4.7E-151 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_A0363 d176f97157b6110f25ec61f81e80368e 502 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 462 5.8E-138 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_A0363 d176f97157b6110f25ec61f81e80368e 502 PRINTS PR00175 Sodium/alanine symporter signature 189 207 1.1E-57 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_A0363 d176f97157b6110f25ec61f81e80368e 502 PRINTS PR00175 Sodium/alanine symporter signature 428 448 1.1E-57 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_A0363 d176f97157b6110f25ec61f81e80368e 502 PRINTS PR00175 Sodium/alanine symporter signature 86 108 1.1E-57 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_A0363 d176f97157b6110f25ec61f81e80368e 502 PRINTS PR00175 Sodium/alanine symporter signature 365 387 1.1E-57 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_A0363 d176f97157b6110f25ec61f81e80368e 502 PRINTS PR00175 Sodium/alanine symporter signature 304 322 1.1E-57 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_A0363 d176f97157b6110f25ec61f81e80368e 502 PRINTS PR00175 Sodium/alanine symporter signature 217 236 1.1E-57 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_A0363 d176f97157b6110f25ec61f81e80368e 502 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 86 101 - T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_1620 d7e3a2423a5637b4df9c3a7615e666c0 332 Gene3D G3DSA:3.40.50.2300 137 323 8.5E-108 T 10-10-2018 VF_1620 d7e3a2423a5637b4df9c3a7615e666c0 332 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 27 286 3.5E-26 T 10-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain VF_1620 d7e3a2423a5637b4df9c3a7615e666c0 332 TIGRFAM TIGR02955 TMAO_TorT: TMAO reductase system periplasmic protein TorT 28 327 6.1E-147 T 10-10-2018 IPR014301 TMAO reductase system, periplasmic protein TorT VF_1620 d7e3a2423a5637b4df9c3a7615e666c0 332 SUPERFAMILY SSF53822 26 292 4.28E-31 T 10-10-2018 IPR028082 Periplasmic binding protein-like I VF_1620 d7e3a2423a5637b4df9c3a7615e666c0 332 Gene3D G3DSA:3.40.50.2300 29 299 8.5E-108 T 10-10-2018 VF_1164 cfc05aa26e71da97fff45eee5779cfaa 427 Pfam PF02687 FtsX-like permease family 322 417 2.0E-8 T 10-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VF_1164 cfc05aa26e71da97fff45eee5779cfaa 427 Pfam PF12704 MacB-like periplasmic core domain 21 255 9.3E-18 T 10-10-2018 IPR025857 MacB-like periplasmic core domain VF_A0943 2c1ca5c4bf2d4fcb39bbd70bfbdfb841 325 SMART SM00354 1 73 2.6E-27 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_A0943 2c1ca5c4bf2d4fcb39bbd70bfbdfb841 325 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 2 325 3.3E-133 T 10-10-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 VF_A0943 2c1ca5c4bf2d4fcb39bbd70bfbdfb841 325 Gene3D G3DSA:3.40.50.2300 62 154 8.5E-18 T 10-10-2018 VF_A0943 2c1ca5c4bf2d4fcb39bbd70bfbdfb841 325 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 63 210 2.2E-11 T 10-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain VF_A0943 2c1ca5c4bf2d4fcb39bbd70bfbdfb841 325 SUPERFAMILY SSF47413 1 58 5.12E-15 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_A0943 2c1ca5c4bf2d4fcb39bbd70bfbdfb841 325 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 10-10-2018 VF_A0943 2c1ca5c4bf2d4fcb39bbd70bfbdfb841 325 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 50 9.8E-18 T 10-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VF_A0943 2c1ca5c4bf2d4fcb39bbd70bfbdfb841 325 SUPERFAMILY SSF53822 61 302 1.85E-34 T 10-10-2018 IPR028082 Periplasmic binding protein-like I VF_A0943 2c1ca5c4bf2d4fcb39bbd70bfbdfb841 325 Gene3D G3DSA:1.10.260.40 1 61 1.2E-25 T 10-10-2018 VF_A0943 2c1ca5c4bf2d4fcb39bbd70bfbdfb841 325 Gene3D G3DSA:3.40.50.2300 155 325 1.5E-21 T 10-10-2018 VF_A0133 309b8f0a59f4754fb1875becc9e1327d 139 SUPERFAMILY SSF56925 28 138 9.02E-5 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VF_A0307 48e15abbdbc09e33bf462a97d37d5a85 295 SUPERFAMILY SSF161098 89 276 1.7E-23 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0307 48e15abbdbc09e33bf462a97d37d5a85 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 292 3.6E-24 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_A0307 48e15abbdbc09e33bf462a97d37d5a85 295 Gene3D G3DSA:1.10.3720.10 85 292 8.2E-20 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0307 48e15abbdbc09e33bf462a97d37d5a85 295 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 14 65 2.9E-11 T 10-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VF_2229 3965388566a7fb0a668036addab458ca 194 Pfam PF05728 Uncharacterised protein family (UPF0227) 7 192 9.0E-68 T 10-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA VF_2229 3965388566a7fb0a668036addab458ca 194 SUPERFAMILY SSF53474 4 193 1.3E-17 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_2229 3965388566a7fb0a668036addab458ca 194 Gene3D G3DSA:3.40.50.1820 6 194 2.1E-61 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_0015 c41f6475c2a18a9335daf0a4fff50e8e 306 SUPERFAMILY SSF55681 8 293 1.62E-131 T 10-10-2018 VF_0015 c41f6475c2a18a9335daf0a4fff50e8e 306 Gene3D G3DSA:1.20.58.180 216 298 1.8E-33 T 10-10-2018 VF_0015 c41f6475c2a18a9335daf0a4fff50e8e 306 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 9 293 7.5E-148 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0015 c41f6475c2a18a9335daf0a4fff50e8e 306 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 7 302 1.2E-169 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0015 c41f6475c2a18a9335daf0a4fff50e8e 306 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 7 294 61.508 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0015 c41f6475c2a18a9335daf0a4fff50e8e 306 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 254 270 2.8E-70 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0015 c41f6475c2a18a9335daf0a4fff50e8e 306 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 139 159 2.8E-70 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0015 c41f6475c2a18a9335daf0a4fff50e8e 306 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 61 76 2.8E-70 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0015 c41f6475c2a18a9335daf0a4fff50e8e 306 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 113 137 2.8E-70 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0015 c41f6475c2a18a9335daf0a4fff50e8e 306 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 82 102 2.8E-70 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0015 c41f6475c2a18a9335daf0a4fff50e8e 306 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 162 177 2.8E-70 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VF_0015 c41f6475c2a18a9335daf0a4fff50e8e 306 Gene3D G3DSA:3.30.930.10 1 215 1.2E-109 T 10-10-2018 VF_0705 a65aeaf8fb91118862ffd3595a4fc4d4 332 PIRSF PIRSF005303 1 328 1.8E-84 T 10-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 VF_0705 a65aeaf8fb91118862ffd3595a4fc4d4 332 SUPERFAMILY SSF55326 4 137 1.57E-35 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VF_0705 a65aeaf8fb91118862ffd3595a4fc4d4 332 SUPERFAMILY SSF56042 142 301 2.24E-33 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VF_0705 a65aeaf8fb91118862ffd3595a4fc4d4 332 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 4 328 4.4E-102 T 10-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 VF_0705 a65aeaf8fb91118862ffd3595a4fc4d4 332 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 2 328 26.693 T 10-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 VF_0705 a65aeaf8fb91118862ffd3595a4fc4d4 332 Gene3D G3DSA:3.30.1330.10 1 143 2.8E-46 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VF_0705 a65aeaf8fb91118862ffd3595a4fc4d4 332 Pfam PF02769 AIR synthase related protein, C-terminal domain 150 301 1.7E-11 T 10-10-2018 IPR010918 PurM-like, C-terminal domain VF_0705 a65aeaf8fb91118862ffd3595a4fc4d4 332 Pfam PF00586 AIR synthase related protein, N-terminal domain 28 137 4.8E-25 T 10-10-2018 IPR016188 PurM-like, N-terminal domain VF_0705 a65aeaf8fb91118862ffd3595a4fc4d4 332 Gene3D G3DSA:3.90.650.10 144 328 6.2E-46 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VF_0525 e66ba110568ead38c6971bf3f93e6dab 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 444 1.6E-6 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0525 e66ba110568ead38c6971bf3f93e6dab 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 1.6E-6 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0525 e66ba110568ead38c6971bf3f93e6dab 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 426 1.6E-6 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0525 e66ba110568ead38c6971bf3f93e6dab 447 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 445 1.3E-12 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0525 e66ba110568ead38c6971bf3f93e6dab 447 SMART SM00387 342 447 1.3E-17 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0525 e66ba110568ead38c6971bf3f93e6dab 447 SUPERFAMILY SSF55874 308 444 3.14E-24 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0525 e66ba110568ead38c6971bf3f93e6dab 447 Gene3D G3DSA:3.30.565.10 305 447 1.4E-25 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0796 469ec75a14d63f9f21eeb4c773a439b5 207 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 15 205 1.7E-107 T 10-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VF_0796 469ec75a14d63f9f21eeb4c773a439b5 207 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 125 138 - T 10-10-2018 IPR033135 ClpP, histidine active site VF_0796 469ec75a14d63f9f21eeb4c773a439b5 207 Pfam PF00574 Clp protease 25 205 4.9E-90 T 10-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA VF_0796 469ec75a14d63f9f21eeb4c773a439b5 207 PRINTS PR00127 Clp protease catalytic subunit P signature 103 120 4.5E-54 T 10-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VF_0796 469ec75a14d63f9f21eeb4c773a439b5 207 PRINTS PR00127 Clp protease catalytic subunit P signature 124 143 4.5E-54 T 10-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VF_0796 469ec75a14d63f9f21eeb4c773a439b5 207 PRINTS PR00127 Clp protease catalytic subunit P signature 32 47 4.5E-54 T 10-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VF_0796 469ec75a14d63f9f21eeb4c773a439b5 207 PRINTS PR00127 Clp protease catalytic subunit P signature 72 92 4.5E-54 T 10-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VF_0796 469ec75a14d63f9f21eeb4c773a439b5 207 PRINTS PR00127 Clp protease catalytic subunit P signature 181 200 4.5E-54 T 10-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VF_0796 469ec75a14d63f9f21eeb4c773a439b5 207 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 103 114 - T 10-10-2018 IPR018215 ClpP, Ser active site VF_0796 469ec75a14d63f9f21eeb4c773a439b5 207 SUPERFAMILY SSF52096 23 206 5.42E-75 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VF_0796 469ec75a14d63f9f21eeb4c773a439b5 207 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 206 44.102 T 10-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VF_0796 469ec75a14d63f9f21eeb4c773a439b5 207 Gene3D G3DSA:3.90.226.10 4 207 3.4E-84 T 10-10-2018 VF_2541 272334e39d2110958df426281d0fe592 369 Gene3D G3DSA:1.10.10.10 298 365 1.6E-5 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2541 272334e39d2110958df426281d0fe592 369 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 73 288 4.4E-79 T 10-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 VF_2541 272334e39d2110958df426281d0fe592 369 Pfam PF02481 DNA recombination-mediator protein A 77 280 1.2E-78 T 10-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 VF_2541 272334e39d2110958df426281d0fe592 369 SUPERFAMILY SSF102405 84 289 1.23E-43 T 10-10-2018 VF_2541 272334e39d2110958df426281d0fe592 369 Gene3D G3DSA:3.40.50.450 1 292 2.6E-97 T 10-10-2018 VF_1841 6be687944ad710cad1646db88fab972d 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.4E-16 T 10-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VF_1841 6be687944ad710cad1646db88fab972d 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.4E-16 T 10-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VF_1841 6be687944ad710cad1646db88fab972d 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.4E-16 T 10-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VF_1841 6be687944ad710cad1646db88fab972d 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 1.5E-27 T 10-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VF_1841 6be687944ad710cad1646db88fab972d 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 87 2.2E-31 T 10-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 VF_1841 6be687944ad710cad1646db88fab972d 89 PIRSF PIRSF004669 1 89 8.7E-29 T 10-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VF_1073 ac3e59ba9e7bee2a012c0f928ca19843 317 PIRSF PIRSF028696 1 317 1.3E-105 T 10-10-2018 IPR016896 Protein of unknown function DUF2860 VF_1073 ac3e59ba9e7bee2a012c0f928ca19843 317 Pfam PF11059 Protein of unknown function (DUF2860) 26 316 6.8E-119 T 10-10-2018 IPR016896 Protein of unknown function DUF2860 VF_1044 2c609235a590e327d8d24574241f71b8 395 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 49 244 5.5E-21 T 10-10-2018 IPR000477 Reverse transcriptase domain VF_1044 2c609235a590e327d8d24574241f71b8 395 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 197 208 2.2E-9 T 10-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 VF_1044 2c609235a590e327d8d24574241f71b8 395 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 164 177 2.2E-9 T 10-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 VF_1044 2c609235a590e327d8d24574241f71b8 395 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 116 134 2.2E-9 T 10-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 VF_1044 2c609235a590e327d8d24574241f71b8 395 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 43 56 2.2E-9 T 10-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 VF_1044 2c609235a590e327d8d24574241f71b8 395 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 251 257 2.2E-9 T 10-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 VF_1044 2c609235a590e327d8d24574241f71b8 395 SUPERFAMILY SSF56672 120 249 1.05E-6 T 10-10-2018 VF_1065 0db02f173b31ec5b2dcbab5a5cdaaa28 625 SUPERFAMILY SSF116726 363 435 3.01E-6 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VF_1065 0db02f173b31ec5b2dcbab5a5cdaaa28 625 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 457 609 3.7E-21 T 10-10-2018 IPR006512 YidE/YbjL duplication VF_1065 0db02f173b31ec5b2dcbab5a5cdaaa28 625 Pfam PF06826 Predicted Permease Membrane Region 452 618 2.9E-28 T 10-10-2018 IPR006512 YidE/YbjL duplication VF_1065 0db02f173b31ec5b2dcbab5a5cdaaa28 625 Pfam PF06826 Predicted Permease Membrane Region 65 240 1.5E-30 T 10-10-2018 IPR006512 YidE/YbjL duplication VF_1183 e8f050a0ddfb3efb0478e39409abc572 360 Gene3D G3DSA:2.40.420.20 271 351 2.9E-71 T 10-10-2018 VF_1183 e8f050a0ddfb3efb0478e39409abc572 360 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 33 353 1.4E-66 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VF_1183 e8f050a0ddfb3efb0478e39409abc572 360 Gene3D G3DSA:2.40.50.100 57 189 2.9E-71 T 10-10-2018 VF_1183 e8f050a0ddfb3efb0478e39409abc572 360 Gene3D G3DSA:2.40.30.170 48 270 2.9E-71 T 10-10-2018 VF_1183 e8f050a0ddfb3efb0478e39409abc572 360 Gene3D G3DSA:1.10.287.470 91 150 2.9E-71 T 10-10-2018 VF_1183 e8f050a0ddfb3efb0478e39409abc572 360 SUPERFAMILY SSF111369 50 263 3.79E-27 T 10-10-2018 VF_1183 e8f050a0ddfb3efb0478e39409abc572 360 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 230 5.7E-11 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VF_2063 84592d3058d71796b80ef2281beb036d 314 Gene3D G3DSA:3.40.50.880 5 302 4.7E-121 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_2063 84592d3058d71796b80ef2281beb036d 314 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 13 303 2.0E-153 T 10-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 VF_2063 84592d3058d71796b80ef2281beb036d 314 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 32 300 41.592 T 10-10-2018 IPR033752 MetA family VF_2063 84592d3058d71796b80ef2281beb036d 314 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 37 290 3.0E-150 T 10-10-2018 VF_2063 84592d3058d71796b80ef2281beb036d 314 SUPERFAMILY SSF52317 18 298 7.63E-101 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_2063 84592d3058d71796b80ef2281beb036d 314 Pfam PF04204 Homoserine O-succinyltransferase 12 300 1.1E-131 T 10-10-2018 IPR033752 MetA family VF_2063 84592d3058d71796b80ef2281beb036d 314 PIRSF PIRSF000450 7 310 5.9E-142 T 10-10-2018 IPR033752 MetA family VF_B0043 4241fc4527cb01319c2be1c1dfd7f4a5 335 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 19 331 3.0E-137 T 10-10-2018 IPR014155 Type IV secretion system protein VirB11 GO:0043684|GO:0044097 VF_B0043 4241fc4527cb01319c2be1c1dfd7f4a5 335 SUPERFAMILY SSF52540 12 312 3.38E-53 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_B0043 4241fc4527cb01319c2be1c1dfd7f4a5 335 Gene3D G3DSA:3.40.50.300 116 335 3.5E-66 T 10-10-2018 VF_B0043 4241fc4527cb01319c2be1c1dfd7f4a5 335 Pfam PF00437 Type II/IV secretion system protein 15 314 1.5E-61 T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_B0043 4241fc4527cb01319c2be1c1dfd7f4a5 335 Gene3D G3DSA:3.30.450.90 8 115 4.3E-38 T 10-10-2018 VF_1692 4c6edd67a6c89e5c114b5152143af7b5 163 Pfam PF02674 Colicin V production protein 4 141 8.6E-36 T 10-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 VF_2490 2402b07fc9631366af452ead02519f42 156 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 54 1.1E-4 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_2490 2402b07fc9631366af452ead02519f42 156 SUPERFAMILY SSF46689 2 54 4.79E-7 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_2490 2402b07fc9631366af452ead02519f42 156 Gene3D G3DSA:1.10.357.10 1 153 7.1E-40 T 10-10-2018 VF_0284 7fe4cbf4c1875d8deb87940c47f0f217 155 Pfam PF00186 Dihydrofolate reductase 1 155 3.1E-59 T 10-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 VF_0284 7fe4cbf4c1875d8deb87940c47f0f217 155 Gene3D G3DSA:3.40.430.10 1 155 1.3E-57 T 10-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 VF_0284 7fe4cbf4c1875d8deb87940c47f0f217 155 PRINTS PR00070 Dihydrofolate reductase signature 10 20 5.4E-14 T 10-10-2018 VF_0284 7fe4cbf4c1875d8deb87940c47f0f217 155 PRINTS PR00070 Dihydrofolate reductase signature 37 48 5.4E-14 T 10-10-2018 VF_0284 7fe4cbf4c1875d8deb87940c47f0f217 155 PRINTS PR00070 Dihydrofolate reductase signature 88 102 5.4E-14 T 10-10-2018 VF_0284 7fe4cbf4c1875d8deb87940c47f0f217 155 PRINTS PR00070 Dihydrofolate reductase signature 24 32 5.4E-14 T 10-10-2018 VF_0284 7fe4cbf4c1875d8deb87940c47f0f217 155 PIRSF PIRSF000194 1 155 1.7E-60 T 10-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 VF_0284 7fe4cbf4c1875d8deb87940c47f0f217 155 SUPERFAMILY SSF53597 1 155 6.54E-56 T 10-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 VF_1130 0697ce9d1604e53d00db106734ef1ee1 152 SUPERFAMILY SSF75217 7 142 2.67E-27 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases VF_1130 0697ce9d1604e53d00db106734ef1ee1 152 Gene3D G3DSA:3.40.1280.10 7 148 1.3E-16 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VF_1130 0697ce9d1604e53d00db106734ef1ee1 152 Pfam PF00588 SpoU rRNA Methylase family 8 139 5.7E-19 T 10-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VF_1085 5fc86aff9081bda8f4c361589c4679ae 204 Pfam PF13505 Outer membrane protein beta-barrel domain 5 204 4.8E-21 T 10-10-2018 IPR027385 Outer membrane protein beta-barrel VF_1085 5fc86aff9081bda8f4c361589c4679ae 204 SUPERFAMILY SSF56925 20 204 2.51E-26 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VF_1085 5fc86aff9081bda8f4c361589c4679ae 204 Gene3D G3DSA:2.40.160.20 19 204 2.3E-24 T 10-10-2018 VF_A0812 30ead32cee61fb424b2d85a9d354f099 308 Pfam PF04018 Domain of unknown function (DUF368) 13 257 1.9E-95 T 10-10-2018 IPR007163 Protein of unknown function DUF368 VF_0356 385e5a1b99b768ac74f1927ea335b6f2 487 PIRSF PIRSF028153 1 486 3.7E-227 T 10-10-2018 IPR016871 MSHA biogenesis protein, MshI VF_0356 385e5a1b99b768ac74f1927ea335b6f2 487 SUPERFAMILY SSF53067 65 161 9.06E-7 T 10-10-2018 VF_2195 9f022e04a8fc400a97f4c25f5d696dc4 305 Gene3D G3DSA:3.30.1700.10 129 305 1.2E-70 T 10-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VF_2195 9f022e04a8fc400a97f4c25f5d696dc4 305 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 298 1.7E-146 T 10-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VF_2195 9f022e04a8fc400a97f4c25f5d696dc4 305 SUPERFAMILY SSF54211 134 278 4.25E-52 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_2195 9f022e04a8fc400a97f4c25f5d696dc4 305 Gene3D G3DSA:3.30.230.20 1 128 4.7E-52 T 10-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VF_2195 9f022e04a8fc400a97f4c25f5d696dc4 305 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 280 46.367 T 10-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VF_2195 9f022e04a8fc400a97f4c25f5d696dc4 305 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 276 7.9E-108 T 10-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VF_2195 9f022e04a8fc400a97f4c25f5d696dc4 305 SUPERFAMILY SSF54211 3 124 2.58E-42 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_A0619 18a3e1df028ee764921267aadeb31b9c 82 Pfam PF11730 Protein of unknown function (DUF3297) 11 81 9.9E-37 T 10-10-2018 IPR021724 Protein of unknown function DUF3297 VF_A0834 5810fb88a67d9918e56a4e8150204642 624 Pfam PF08308 PEGA domain 315 382 6.3E-23 T 10-10-2018 IPR013229 PEGA VF_A0834 5810fb88a67d9918e56a4e8150204642 624 Pfam PF03781 Sulfatase-modifying factor enzyme 1 401 622 1.4E-48 T 10-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 VF_A0834 5810fb88a67d9918e56a4e8150204642 624 SUPERFAMILY SSF56436 401 623 4.94E-55 T 10-10-2018 IPR016187 C-type lectin fold VF_A0834 5810fb88a67d9918e56a4e8150204642 624 Gene3D G3DSA:3.90.1580.10 401 623 8.4E-53 T 10-10-2018 VF_A0219 edb0e266dfa90bcc1e75dfc8429d631f 261 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 8 223 4.5E-40 T 10-10-2018 IPR017592 Pilus assembly, Flp-type CpaB VF_A0219 edb0e266dfa90bcc1e75dfc8429d631f 261 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 115 223 4.1E-10 T 10-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain VF_1915 3aacba95ff7f226eea80b0889abc771e 222 SUPERFAMILY SSF55166 19 174 3.45E-17 T 10-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VF_1915 3aacba95ff7f226eea80b0889abc771e 222 Gene3D G3DSA:3.30.1380.10 2 191 6.6E-35 T 10-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VF_1915 3aacba95ff7f226eea80b0889abc771e 222 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 21 174 6.3E-35 T 10-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 VF_1655 41bb715256aa44aee1c08a523bdeced7 799 Gene3D G3DSA:3.40.50.300 470 613 3.1E-9 T 10-10-2018 VF_1655 41bb715256aa44aee1c08a523bdeced7 799 SUPERFAMILY SSF52540 478 643 2.87E-9 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1655 41bb715256aa44aee1c08a523bdeced7 799 Pfam PF13401 AAA domain 489 600 7.6E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1652 74b116e7883cd4cb3794fe55b21c9b8a 628 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 461 488 1.4E-20 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_1652 74b116e7883cd4cb3794fe55b21c9b8a 628 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 490 519 1.4E-20 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_1652 74b116e7883cd4cb3794fe55b21c9b8a 628 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 82 107 1.4E-20 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VF_1652 74b116e7883cd4cb3794fe55b21c9b8a 628 Gene3D G3DSA:3.30.450.20 176 254 8.6E-17 T 10-10-2018 VF_1652 74b116e7883cd4cb3794fe55b21c9b8a 628 SMART SM00283 363 624 1.3E-57 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_1652 74b116e7883cd4cb3794fe55b21c9b8a 628 SUPERFAMILY SSF103190 127 185 2.88E-6 T 10-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VF_1652 74b116e7883cd4cb3794fe55b21c9b8a 628 SUPERFAMILY SSF58104 369 623 1.7E-66 T 10-10-2018 VF_1652 74b116e7883cd4cb3794fe55b21c9b8a 628 Pfam PF02743 Cache domain 41 255 2.0E-19 T 10-10-2018 IPR033479 Double Cache domain 1 VF_1652 74b116e7883cd4cb3794fe55b21c9b8a 628 Gene3D G3DSA:3.30.450.20 89 175 8.6E-17 T 10-10-2018 VF_1652 74b116e7883cd4cb3794fe55b21c9b8a 628 Gene3D G3DSA:1.10.287.950 304 626 5.3E-60 T 10-10-2018 VF_1652 74b116e7883cd4cb3794fe55b21c9b8a 628 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 427 587 7.3E-38 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VF_0272 f8315b5e37153eddfe76a977aae68cbf 145 PIRSF PIRSF006276 1 145 2.9E-18 T 10-10-2018 IPR006015 Universal stress protein A VF_0272 f8315b5e37153eddfe76a977aae68cbf 145 PRINTS PR01438 Universal stress protein signature 2 20 8.4E-12 T 10-10-2018 IPR006015 Universal stress protein A VF_0272 f8315b5e37153eddfe76a977aae68cbf 145 PRINTS PR01438 Universal stress protein signature 102 114 8.4E-12 T 10-10-2018 IPR006015 Universal stress protein A VF_0272 f8315b5e37153eddfe76a977aae68cbf 145 PRINTS PR01438 Universal stress protein signature 120 142 8.4E-12 T 10-10-2018 IPR006015 Universal stress protein A VF_0272 f8315b5e37153eddfe76a977aae68cbf 145 Gene3D G3DSA:3.40.50.620 1 142 7.2E-38 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0272 f8315b5e37153eddfe76a977aae68cbf 145 Pfam PF00582 Universal stress protein family 1 142 2.1E-33 T 10-10-2018 IPR006016 UspA VF_0272 f8315b5e37153eddfe76a977aae68cbf 145 SUPERFAMILY SSF52402 2 143 7.67E-37 T 10-10-2018 VF_A0139 0e98bbdf2a72c28b2ea0b815986172bc 344 SUPERFAMILY SSF53474 74 203 1.14E-10 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_A0139 0e98bbdf2a72c28b2ea0b815986172bc 344 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 70 245 2.8E-21 T 10-10-2018 IPR010297 Protein of unknown function DUF900, hydrolase-like VF_A0139 0e98bbdf2a72c28b2ea0b815986172bc 344 Gene3D G3DSA:3.40.50.1820 8 217 2.2E-7 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_1112 4aeedbbb240cb33952fcf65214b0e821 327 Gene3D G3DSA:3.40.50.1000 121 325 5.1E-42 T 10-10-2018 IPR023214 HAD superfamily VF_1112 4aeedbbb240cb33952fcf65214b0e821 327 SUPERFAMILY SSF56784 62 309 2.07E-24 T 10-10-2018 IPR036412 HAD-like superfamily VF_1112 4aeedbbb240cb33952fcf65214b0e821 327 Pfam PF12710 haloacid dehalogenase-like hydrolase 64 268 1.6E-17 T 10-10-2018 VF_0938 cf9abf80ed3fd7a9705f3261e39fe655 118 Pfam PF01627 Hpt domain 33 93 5.2E-8 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VF_0938 cf9abf80ed3fd7a9705f3261e39fe655 118 Gene3D G3DSA:1.20.120.160 4 115 1.2E-19 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_0938 cf9abf80ed3fd7a9705f3261e39fe655 118 SUPERFAMILY SSF47226 16 115 4.58E-19 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_2098 49b58b83a6db446df21200893988ce4d 160 Gene3D G3DSA:3.90.960.10 2 158 3.2E-40 T 10-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VF_2098 49b58b83a6db446df21200893988ce4d 160 SUPERFAMILY SSF55826 6 156 1.24E-38 T 10-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VF_2098 49b58b83a6db446df21200893988ce4d 160 Pfam PF04073 Aminoacyl-tRNA editing domain 31 144 4.4E-25 T 10-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 VF_A0194 e070d4fa3d84ee2341cb348ffa2b7187 169 Pfam PF01618 MotA/TolQ/ExbB proton channel family 58 162 3.0E-22 T 10-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VF_2455 5791ec4b879e495271167b85fd3f7362 88 Pfam PF06611 Protein of unknown function (DUF1145) 4 59 2.9E-18 T 10-10-2018 IPR009525 Protein of unknown function DUF1145 VF_0699 7f9e50d8e330f1cbdd04a2b853286c41 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 3.5E-72 T 10-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 VF_0699 7f9e50d8e330f1cbdd04a2b853286c41 149 Pfam PF03477 ATP cone domain 50 136 1.8E-15 T 10-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 VF_0699 7f9e50d8e330f1cbdd04a2b853286c41 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 88.575 T 10-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 VF_0320 3b301a94326632bd22a837b9d5ae604e 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 57.689 T 10-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VF_0320 3b301a94326632bd22a837b9d5ae604e 302 SUPERFAMILY SSF52402 6 209 7.94E-76 T 10-10-2018 VF_0320 3b301a94326632bd22a837b9d5ae604e 302 Gene3D G3DSA:3.40.50.620 7 211 4.9E-67 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_0320 3b301a94326632bd22a837b9d5ae604e 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 2.6E-162 T 10-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VF_0320 3b301a94326632bd22a837b9d5ae604e 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 7.6E-65 T 10-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 VF_0320 3b301a94326632bd22a837b9d5ae604e 302 PIRSF PIRSF002936 1 302 4.2E-156 T 10-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VF_1674 df7a43b36d2bd31c9758fa250ac97e04 580 Gene3D G3DSA:3.40.190.10 112 356 1.1E-28 T 10-10-2018 VF_1674 df7a43b36d2bd31c9758fa250ac97e04 580 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 164 341 2.9E-17 T 10-10-2018 IPR000914 Solute-binding protein family 5 domain VF_1674 df7a43b36d2bd31c9758fa250ac97e04 580 SUPERFAMILY SSF53850 117 578 2.17E-59 T 10-10-2018 VF_1674 df7a43b36d2bd31c9758fa250ac97e04 580 Pfam PF12793 Sugar transport-related sRNA regulator N-term 6 118 3.0E-35 T 10-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain VF_A1080 7a10162f928991a08c6da3fe9f5a47f6 295 SUPERFAMILY SSF103481 212 292 1.96E-5 T 10-10-2018 VF_A1080 7a10162f928991a08c6da3fe9f5a47f6 295 SUPERFAMILY SSF103481 54 140 1.18E-5 T 10-10-2018 VF_A1080 7a10162f928991a08c6da3fe9f5a47f6 295 Pfam PF00892 EamA-like transporter family 160 285 3.7E-7 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_1576 24c56ce697e27239ecb76b27c111e34f 151 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 40 138 1.4E-39 T 10-10-2018 IPR039366 YscW/ExsB VF_1110 4186b359bb3957857be6d9ca0eafae49 85 Pfam PF11391 Protein of unknown function (DUF2798) 11 70 1.2E-16 T 10-10-2018 IPR021529 Protein of unknown function DUF2798 VF_2509 03ced4c784020e4dc9894319bbb715ae 246 Pfam PF07071 KDGP aldolase 8 225 1.0E-112 T 10-10-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VF_2509 03ced4c784020e4dc9894319bbb715ae 246 TIGRFAM TIGR03581 EF_0839: conserved hypothetical protein EF_0839/AHA_3917 8 243 2.6E-127 T 10-10-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VF_2509 03ced4c784020e4dc9894319bbb715ae 246 Gene3D G3DSA:3.20.20.70 1 246 3.3E-119 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A1129 b02f3e3d7f6577a2287327aad4817fae 3804 Pfam PF15645 Dermonecrotoxin of the Papain-like fold 2951 3089 9.2E-50 T 10-10-2018 IPR028907 Tox-PLDMTX domain VF_A1129 b02f3e3d7f6577a2287327aad4817fae 3804 Gene3D G3DSA:3.10.670.10 2926 3099 2.9E-36 T 10-10-2018 VF_1858 f412eab0040d560c8fbd8ac1395699fa 136 SUPERFAMILY SSF101116 6 127 3.14E-38 T 10-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 VF_1858 f412eab0040d560c8fbd8ac1395699fa 136 PIRSF PIRSF039090 1 133 3.6E-43 T 10-10-2018 IPR003713 Flagellar protein FliS GO:0044780 VF_1858 f412eab0040d560c8fbd8ac1395699fa 136 TIGRFAM TIGR00208 fliS: flagellar protein FliS 4 122 5.3E-25 T 10-10-2018 IPR003713 Flagellar protein FliS GO:0044780 VF_1858 f412eab0040d560c8fbd8ac1395699fa 136 Pfam PF02561 Flagellar protein FliS 6 122 1.0E-36 T 10-10-2018 IPR003713 Flagellar protein FliS GO:0044780 VF_1858 f412eab0040d560c8fbd8ac1395699fa 136 Gene3D G3DSA:1.20.120.340 2 126 4.2E-39 T 10-10-2018 VF_1432 66657cfa4f8f3bc23db8663b62d85b95 94 Hamap MF_00674 UPF0251 protein . 2 93 23.486 T 10-10-2018 IPR002852 Uncharacterised protein family UPF0251 VF_1432 66657cfa4f8f3bc23db8663b62d85b95 94 Gene3D G3DSA:1.10.10.10 28 83 1.4E-5 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1432 66657cfa4f8f3bc23db8663b62d85b95 94 Pfam PF02001 Protein of unknown function DUF134 2 90 2.0E-20 T 10-10-2018 IPR002852 Uncharacterised protein family UPF0251 VF_1432 66657cfa4f8f3bc23db8663b62d85b95 94 SUPERFAMILY SSF88659 36 82 2.62E-5 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VF_2111 bcd0a6375f1d9d9ac04bd4afa90db143 59 Pfam PF12065 Protein of unknown function (DUF3545) 1 56 4.7E-23 T 10-10-2018 IPR021932 Protein of unknown function DUF3545 VF_1361 64e8800978d8a68989ec423a55d86c9f 65 PIRSF PIRSF036704 1 65 1.1E-31 T 10-10-2018 IPR014177 Putative formate dehydrogenase, TAT signal-containing VF_1361 64e8800978d8a68989ec423a55d86c9f 65 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 8 36 3.1E-5 T 10-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VF_1361 64e8800978d8a68989ec423a55d86c9f 65 TIGRFAM TIGR02811 formate_TAT: formate dehydrogenase region TAT target 1 65 3.2E-30 T 10-10-2018 IPR014177 Putative formate dehydrogenase, TAT signal-containing VF_1361 64e8800978d8a68989ec423a55d86c9f 65 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 7 31 1.5E-5 T 10-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VF_0758 73245eadaba926dfb2398dbd01e0db33 394 SUPERFAMILY SSF52540 120 359 1.72E-41 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0758 73245eadaba926dfb2398dbd01e0db33 394 Pfam PF02562 PhoH-like protein 159 362 1.7E-94 T 10-10-2018 IPR003714 PhoH-like protein GO:0005524 VF_0758 73245eadaba926dfb2398dbd01e0db33 394 Gene3D G3DSA:3.40.50.300 156 362 2.1E-73 T 10-10-2018 VF_1793 e05b7c05b13d2a3fc1f7415a0e5f5a45 582 Gene3D G3DSA:3.40.50.300 6 464 1.9E-188 T 10-10-2018 VF_1793 e05b7c05b13d2a3fc1f7415a0e5f5a45 582 Pfam PF01268 Formate--tetrahydrofolate ligase 2 581 5.6E-242 T 10-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 VF_1793 e05b7c05b13d2a3fc1f7415a0e5f5a45 582 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 345 356 - T 10-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 VF_1793 e05b7c05b13d2a3fc1f7415a0e5f5a45 582 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 1 582 43.126 T 10-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 VF_1793 e05b7c05b13d2a3fc1f7415a0e5f5a45 582 SUPERFAMILY SSF52540 4 580 7.3E-221 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1793 e05b7c05b13d2a3fc1f7415a0e5f5a45 582 Gene3D G3DSA:3.10.410.10 469 558 4.9E-32 T 10-10-2018 VF_1793 e05b7c05b13d2a3fc1f7415a0e5f5a45 582 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 103 113 - T 10-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 VF_1793 e05b7c05b13d2a3fc1f7415a0e5f5a45 582 Gene3D G3DSA:3.30.1510.10 129 264 1.9E-188 T 10-10-2018 VF_A0064 d55d550f0c10932bb2a61fe5b02bf57f 244 SUPERFAMILY SSF52540 19 226 9.77E-29 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0064 d55d550f0c10932bb2a61fe5b02bf57f 244 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 44 196 5.5E-8 T 10-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 VF_A0064 d55d550f0c10932bb2a61fe5b02bf57f 244 Gene3D G3DSA:3.40.50.300 62 242 1.2E-43 T 10-10-2018 VF_A0064 d55d550f0c10932bb2a61fe5b02bf57f 244 Gene3D G3DSA:3.40.50.300 20 61 7.0E-6 T 10-10-2018 VF_A0306 1022837027e0e5675530e030f2ab6b9a 337 Gene3D G3DSA:3.40.50.300 2 336 9.2E-73 T 10-10-2018 VF_A0306 1022837027e0e5675530e030f2ab6b9a 337 SMART SM00382 32 237 3.8E-5 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A0306 1022837027e0e5675530e030f2ab6b9a 337 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 306 1.1E-14 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_A0306 1022837027e0e5675530e030f2ab6b9a 337 SUPERFAMILY SSF52540 4 265 5.13E-48 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0306 1022837027e0e5675530e030f2ab6b9a 337 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 238 324 1.1E-19 T 10-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VF_A0306 1022837027e0e5675530e030f2ab6b9a 337 Pfam PF00005 ABC transporter 24 186 3.8E-25 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1353 d8e8e02a62666c0e4d9c2f8547cb8931 104 Pfam PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA 19 101 4.1E-8 T 10-10-2018 IPR032758 Antitoxin MqsA/HigA-2 VF_1353 d8e8e02a62666c0e4d9c2f8547cb8931 104 Gene3D G3DSA:1.10.260.40 5 101 1.4E-17 T 10-10-2018 VF_1353 d8e8e02a62666c0e4d9c2f8547cb8931 104 SUPERFAMILY SSF47413 43 90 2.25E-8 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_1293 feaff59ab3d54a987651b812766fdb79 556 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 463 481 4.7E-10 T 10-10-2018 VF_1293 feaff59ab3d54a987651b812766fdb79 556 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 403 422 4.7E-10 T 10-10-2018 VF_1293 feaff59ab3d54a987651b812766fdb79 556 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 320 336 4.7E-10 T 10-10-2018 VF_1293 feaff59ab3d54a987651b812766fdb79 556 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 433 452 4.7E-10 T 10-10-2018 VF_1293 feaff59ab3d54a987651b812766fdb79 556 Gene3D G3DSA:3.30.230.10 297 537 5.0E-88 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VF_1293 feaff59ab3d54a987651b812766fdb79 556 Pfam PF13654 AAA domain 58 291 2.0E-21 T 10-10-2018 VF_1293 feaff59ab3d54a987651b812766fdb79 556 SUPERFAMILY SSF54211 318 514 1.74E-32 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VF_1293 feaff59ab3d54a987651b812766fdb79 556 Gene3D G3DSA:3.40.50.300 13 204 6.0E-13 T 10-10-2018 VF_1293 feaff59ab3d54a987651b812766fdb79 556 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 406 512 3.1E-9 T 10-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 VF_1625 71ef91c2ad130c7f824f64b2beee7d9e 184 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 10-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 VF_1625 71ef91c2ad130c7f824f64b2beee7d9e 184 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 180 5.5E-55 T 10-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 VF_1625 71ef91c2ad130c7f824f64b2beee7d9e 184 Pfam PF01066 CDP-alcohol phosphatidyltransferase 5 71 1.5E-17 T 10-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 VF_1625 71ef91c2ad130c7f824f64b2beee7d9e 184 PIRSF PIRSF000847 1 181 1.9E-44 T 10-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 VF_1625 71ef91c2ad130c7f824f64b2beee7d9e 184 Gene3D G3DSA:1.20.120.1760 1 180 2.4E-18 T 10-10-2018 VF_0498 c238ce8f73d25e46c1cf92bf7b989861 133 PIRSF PIRSF029225 3 133 7.5E-29 T 10-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0498 c238ce8f73d25e46c1cf92bf7b989861 133 ProDom PD032475 DNA POLYMERASE PSI SUBUNIT III TRANSFERASE NUCLEOTIDYLTRANSFERASE III 3D-STRUCTURE DNA-DIRECTED 36 128 1.0E-7 T 10-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0498 c238ce8f73d25e46c1cf92bf7b989861 133 SUPERFAMILY SSF102220 31 133 6.8E-31 T 10-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0498 c238ce8f73d25e46c1cf92bf7b989861 133 Pfam PF03603 DNA polymerase III psi subunit 5 130 2.5E-32 T 10-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0498 c238ce8f73d25e46c1cf92bf7b989861 133 Gene3D G3DSA:3.40.50.10220 35 133 3.1E-28 T 10-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_0424 ccd896200ba173ae62e545aab0f232c7 386 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 374 1.2E-136 T 10-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 VF_0424 ccd896200ba173ae62e545aab0f232c7 386 SMART SM00729 6 227 1.5E-53 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VF_0424 ccd896200ba173ae62e545aab0f232c7 386 Pfam PF04055 Radical SAM superfamily 11 179 7.0E-16 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_0424 ccd896200ba173ae62e545aab0f232c7 386 Gene3D G3DSA:3.80.30.20 3 296 3.0E-96 T 10-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VF_0424 ccd896200ba173ae62e545aab0f232c7 386 SUPERFAMILY SSF102114 4 382 4.45E-107 T 10-10-2018 VF_0412 a1e2dcd8c8e93f6bc27293102a0f8857 147 SUPERFAMILY SSF102400 1 143 3.27E-46 T 10-10-2018 IPR036768 DNA polymerase III subunit chi superfamily VF_0412 a1e2dcd8c8e93f6bc27293102a0f8857 147 Gene3D G3DSA:3.40.50.10110 1 147 7.6E-48 T 10-10-2018 IPR036768 DNA polymerase III subunit chi superfamily VF_0412 a1e2dcd8c8e93f6bc27293102a0f8857 147 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 141 3.0E-36 T 10-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 VF_1634 fb39535d9e8d51b2ed4365b38adfab8d 530 TIGRFAM TIGR00774 NhaB: Na+/H+ antiporter NhaB 1 516 5.6E-295 T 10-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 VF_1634 fb39535d9e8d51b2ed4365b38adfab8d 530 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 1 515 3.7E-290 T 10-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 VF_1634 fb39535d9e8d51b2ed4365b38adfab8d 530 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 530 372.778 T 10-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 VF_2656 d1ef1362ad5b0eb9f7e68fa8cb85c891 51 SUPERFAMILY SSF50249 1 51 5.71E-8 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_2656 d1ef1362ad5b0eb9f7e68fa8cb85c891 51 Gene3D G3DSA:2.40.50.140 1 51 1.5E-10 T 10-10-2018 VF_1363 11f182b8325f34278231ee12022ce566 566 Gene3D G3DSA:3.30.70.20 428 501 3.1E-12 T 10-10-2018 VF_1363 11f182b8325f34278231ee12022ce566 566 Gene3D G3DSA:3.30.70.20 175 262 1.0E-11 T 10-10-2018 VF_1363 11f182b8325f34278231ee12022ce566 566 Pfam PF12838 4Fe-4S dicluster domain 196 242 1.3E-8 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_1363 11f182b8325f34278231ee12022ce566 566 SUPERFAMILY SSF54862 154 517 8.37E-39 T 10-10-2018 VF_1363 11f182b8325f34278231ee12022ce566 566 Pfam PF13187 4Fe-4S dicluster domain 432 477 2.4E-6 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_1363 11f182b8325f34278231ee12022ce566 566 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 464 475 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_1821 ba29d3b64821719b12e46411fc7dc605 68 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 10 55 2.6E-20 T 10-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 VF_1821 ba29d3b64821719b12e46411fc7dc605 68 Pfam PF04995 Heme exporter protein D (CcmD) 13 56 7.9E-17 T 10-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 VF_1704 16f11549567fdfda43b4edb948a69cc0 221 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 5 219 1.1E-72 T 10-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 VF_1704 16f11549567fdfda43b4edb948a69cc0 221 SUPERFAMILY SSF63848 114 219 1.06E-30 T 10-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 VF_1704 16f11549567fdfda43b4edb948a69cc0 221 Gene3D G3DSA:3.30.750.120 2 112 1.2E-33 T 10-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily VF_1704 16f11549567fdfda43b4edb948a69cc0 221 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 116 216 6.3E-32 T 10-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 VF_1704 16f11549567fdfda43b4edb948a69cc0 221 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 100 4.8E-28 T 10-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 VF_1704 16f11549567fdfda43b4edb948a69cc0 221 Gene3D G3DSA:2.160.20.70 113 221 1.6E-31 T 10-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 VF_1704 16f11549567fdfda43b4edb948a69cc0 221 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 4 220 27.406 T 10-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 VF_0146 f80c6f13e5a8c29c4f1922d74ffd594c 326 Gene3D G3DSA:3.30.360.10 126 326 1.5E-26 T 10-10-2018 VF_0146 f80c6f13e5a8c29c4f1922d74ffd594c 326 SUPERFAMILY SSF55347 129 302 3.05E-23 T 10-10-2018 VF_0146 f80c6f13e5a8c29c4f1922d74ffd594c 326 SUPERFAMILY SSF51735 8 158 4.67E-30 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0146 f80c6f13e5a8c29c4f1922d74ffd594c 326 Gene3D G3DSA:3.40.50.720 6 125 1.4E-19 T 10-10-2018 VF_0146 f80c6f13e5a8c29c4f1922d74ffd594c 326 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 8 123 4.0E-16 T 10-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 VF_2136 f1b8e13ab580009ba12684370a328430 361 Pfam PF01594 AI-2E family transporter 14 347 2.9E-51 T 10-10-2018 IPR002549 Transmembrane protein TqsA-like VF_2164 609c814113a75ad639913ef708e743a1 235 Gene3D G3DSA:2.40.50.580 1 80 3.3E-25 T 10-10-2018 VF_2164 609c814113a75ad639913ef708e743a1 235 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 235 55.304 T 10-10-2018 IPR005224 Sugar fermentation stimulation protein VF_2164 609c814113a75ad639913ef708e743a1 235 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 2 231 1.4E-68 T 10-10-2018 IPR005224 Sugar fermentation stimulation protein VF_2164 609c814113a75ad639913ef708e743a1 235 Pfam PF03749 Sugar fermentation stimulation protein 13 227 4.6E-70 T 10-10-2018 IPR005224 Sugar fermentation stimulation protein VF_2164 609c814113a75ad639913ef708e743a1 235 Gene3D G3DSA:3.40.1350.60 81 235 2.3E-53 T 10-10-2018 VF_1275 3a6b065fae7511837f615c21f4c44f67 878 Pfam PF02470 MlaD protein 163 222 1.4E-6 T 10-10-2018 IPR003399 Mce/MlaD VF_1275 3a6b065fae7511837f615c21f4c44f67 878 Pfam PF02470 MlaD protein 282 351 1.1E-7 T 10-10-2018 IPR003399 Mce/MlaD VF_1275 3a6b065fae7511837f615c21f4c44f67 878 Pfam PF02470 MlaD protein 748 805 2.3E-6 T 10-10-2018 IPR003399 Mce/MlaD VF_1275 3a6b065fae7511837f615c21f4c44f67 878 Pfam PF02470 MlaD protein 48 139 1.0E-13 T 10-10-2018 IPR003399 Mce/MlaD VF_1275 3a6b065fae7511837f615c21f4c44f67 878 Pfam PF02470 MlaD protein 397 460 3.7E-7 T 10-10-2018 IPR003399 Mce/MlaD VF_1275 3a6b065fae7511837f615c21f4c44f67 878 Pfam PF02470 MlaD protein 639 726 7.7E-10 T 10-10-2018 IPR003399 Mce/MlaD VF_0097 494254ed6edeb485d5e0869b413dd25a 178 Pfam PF13511 Domain of unknown function (DUF4124) 9 54 2.6E-12 T 10-10-2018 IPR025392 Domain of unknown function DUF4124 VF_2454 4831562afc5cd6e6f2d5696538d5bd2e 200 SUPERFAMILY SSF53335 21 197 1.11E-53 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_2454 4831562afc5cd6e6f2d5696538d5bd2e 200 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 133 139 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VF_2454 4831562afc5cd6e6f2d5696538d5bd2e 200 Pfam PF03602 Conserved hypothetical protein 95 21 196 2.0E-62 T 10-10-2018 VF_2454 4831562afc5cd6e6f2d5696538d5bd2e 200 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 18 199 1.6E-60 T 10-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 VF_2454 4831562afc5cd6e6f2d5696538d5bd2e 200 Gene3D G3DSA:3.40.50.150 11 200 2.0E-65 T 10-10-2018 VF_2454 4831562afc5cd6e6f2d5696538d5bd2e 200 PIRSF PIRSF004553 20 200 2.1E-57 T 10-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 VF_1220 ef9f40cce16e73b8f2c5e4e713999cfe 259 SMART SM00382 32 219 2.1E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1220 ef9f40cce16e73b8f2c5e4e713999cfe 259 Pfam PF00005 ABC transporter 23 171 1.1E-24 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_1220 ef9f40cce16e73b8f2c5e4e713999cfe 259 Gene3D G3DSA:3.40.50.300 3 258 3.0E-61 T 10-10-2018 VF_1220 ef9f40cce16e73b8f2c5e4e713999cfe 259 SUPERFAMILY SSF52540 7 232 1.25E-51 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A1050 cbd4d04acb882506c016d9a4c46ce2a3 263 SUPERFAMILY SSF53850 3 261 2.35E-48 T 10-10-2018 VF_A1050 cbd4d04acb882506c016d9a4c46ce2a3 263 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 4 255 2.0E-50 T 10-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 VF_A1050 cbd4d04acb882506c016d9a4c46ce2a3 263 Gene3D G3DSA:3.40.190.100 85 200 7.2E-41 T 10-10-2018 VF_A1050 cbd4d04acb882506c016d9a4c46ce2a3 263 Gene3D G3DSA:3.40.190.10 7 261 7.2E-41 T 10-10-2018 VF_1836 08d536243c01a9a7a86b1cfb60d74739 492 SMART SM00382 275 413 3.3E-7 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_1836 08d536243c01a9a7a86b1cfb60d74739 492 Gene3D G3DSA:1.20.120.1380 251 460 1.7E-57 T 10-10-2018 VF_1836 08d536243c01a9a7a86b1cfb60d74739 492 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 2 364 2.7E-86 T 10-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 VF_1836 08d536243c01a9a7a86b1cfb60d74739 492 Gene3D G3DSA:3.40.50.300 271 457 1.7E-57 T 10-10-2018 VF_1836 08d536243c01a9a7a86b1cfb60d74739 492 Pfam PF00448 SRP54-type protein, GTPase domain 278 466 2.0E-39 T 10-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VF_1836 08d536243c01a9a7a86b1cfb60d74739 492 SMART SM00962 276 469 1.5E-68 T 10-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VF_1836 08d536243c01a9a7a86b1cfb60d74739 492 SUPERFAMILY SSF52540 273 464 3.48E-33 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0967 1b89dd963cfaf81d5b0fac2b58b8b56f 150 Pfam PF06610 L-alanine exporter 8 142 1.8E-69 T 10-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 VF_0967 1b89dd963cfaf81d5b0fac2b58b8b56f 150 ProDom PD090021 MEMBRANE YGAW TRANSMEMBRANE INNER VV2263 Y3636 VC1828 VP1070 15 142 2.0E-69 T 10-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 VF_0967 1b89dd963cfaf81d5b0fac2b58b8b56f 150 Hamap MF_00914 L-alanine exporter AlaE [alaE]. 2 145 33.581 T 10-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 VF_2640 dde7b93a7f14014be0869062defc6113 55 Pfam PF10948 Protein of unknown function (DUF2635) 5 48 2.7E-20 T 10-10-2018 IPR024400 Protein of unknown function DUF2635 VF_2640 dde7b93a7f14014be0869062defc6113 55 ProDom PD027295 GP38 FLUMU BACTERIOPHAGE MU-LIKE ECS4978 SB12 PHAGE ORF10 PROPHAGE 4 46 6.0E-7 T 10-10-2018 IPR024400 Protein of unknown function DUF2635 VF_0531 e812c29596585e687f73fde7eb5b667a 425 Gene3D G3DSA:2.30.40.10 8 409 1.2E-176 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_0531 e812c29596585e687f73fde7eb5b667a 425 SUPERFAMILY SSF51338 1 76 5.94E-7 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_0531 e812c29596585e687f73fde7eb5b667a 425 SUPERFAMILY SSF51556 54 374 1.64E-105 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_0531 e812c29596585e687f73fde7eb5b667a 425 Pfam PF07969 Amidohydrolase family 43 402 1.6E-52 T 10-10-2018 IPR013108 Amidohydrolase 3 VF_0531 e812c29596585e687f73fde7eb5b667a 425 Gene3D G3DSA:3.20.20.140 55 362 1.2E-176 T 10-10-2018 VF_A0473 fb8652d86e7c8992f75ca7d909428604 203 Pfam PF00486 Transcriptional regulatory protein, C terminal 34 102 1.6E-11 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VF_A0473 fb8652d86e7c8992f75ca7d909428604 203 SUPERFAMILY SSF46894 19 102 1.81E-8 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VF_A0473 fb8652d86e7c8992f75ca7d909428604 203 Gene3D G3DSA:1.10.10.10 4 126 5.4E-12 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2647 c8ad10c06f5b354a06587439f2743a92 61 Gene3D G3DSA:1.10.260.40 1 59 1.4E-25 T 10-10-2018 VF_2647 c8ad10c06f5b354a06587439f2743a92 61 SUPERFAMILY SSF47413 1 56 5.2E-16 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_2647 c8ad10c06f5b354a06587439f2743a92 61 Pfam PF14549 DNA-binding transcriptional regulator Cro 2 60 1.8E-28 T 10-10-2018 VF_0171 d16d6c178154d332277010101fb22372 439 SUPERFAMILY SSF53756 157 433 9.1E-10 T 10-10-2018 VF_1656 c2317394321e1755387a4105e004ead0 293 Gene3D G3DSA:3.30.70.100 194 285 5.4E-6 T 10-10-2018 VF_1656 c2317394321e1755387a4105e004ead0 293 Pfam PF00924 Mechanosensitive ion channel 85 281 7.6E-34 T 10-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VF_1656 c2317394321e1755387a4105e004ead0 293 Gene3D G3DSA:2.30.30.60 139 187 4.0E-9 T 10-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VF_1656 c2317394321e1755387a4105e004ead0 293 SUPERFAMILY SSF50182 124 184 2.58E-14 T 10-10-2018 IPR010920 LSM domain superfamily VF_1656 c2317394321e1755387a4105e004ead0 293 SUPERFAMILY SSF82689 196 284 1.83E-6 T 10-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 VF_2333 23ac5c2691c1c7fb1ed6dd50d5f9ed87 328 Pfam PF00152 tRNA synthetases class II (D, K and N) 17 325 2.9E-44 T 10-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VF_2333 23ac5c2691c1c7fb1ed6dd50d5f9ed87 328 Gene3D G3DSA:3.30.930.10 8 328 4.5E-110 T 10-10-2018 VF_2333 23ac5c2691c1c7fb1ed6dd50d5f9ed87 328 Hamap MF_00174 Elongation factor P--(R)-beta-lysine ligase [epmA]. 5 328 53.774 T 10-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 VF_2333 23ac5c2691c1c7fb1ed6dd50d5f9ed87 328 SUPERFAMILY SSF55681 13 326 2.19E-83 T 10-10-2018 VF_2333 23ac5c2691c1c7fb1ed6dd50d5f9ed87 328 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 19 323 7.1E-129 T 10-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 VF_1345 0ed805653951c952a7caa566e67b5e63 179 Gene3D G3DSA:3.40.630.30 1 178 2.7E-46 T 10-10-2018 VF_1345 0ed805653951c952a7caa566e67b5e63 179 SUPERFAMILY SSF55729 6 174 1.83E-43 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_1345 0ed805653951c952a7caa566e67b5e63 179 Pfam PF13302 Acetyltransferase (GNAT) domain 12 150 6.9E-21 T 10-10-2018 IPR000182 GNAT domain VF_1726 b26fdf63bebf7d838d525ccaa2da7b51 789 Pfam PF04055 Radical SAM superfamily 373 578 4.7E-19 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VF_1726 b26fdf63bebf7d838d525ccaa2da7b51 789 Pfam PF11842 Domain of unknown function (DUF3362) 587 735 3.8E-44 T 10-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal VF_1726 b26fdf63bebf7d838d525ccaa2da7b51 789 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 23 638 1.1E-261 T 10-10-2018 IPR022946 Uncharacterised protein family UPF0313 VF_1726 b26fdf63bebf7d838d525ccaa2da7b51 789 SUPERFAMILY SSF102114 373 607 4.97E-10 T 10-10-2018 VF_1726 b26fdf63bebf7d838d525ccaa2da7b51 789 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 373 393 - T 10-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 VF_1726 b26fdf63bebf7d838d525ccaa2da7b51 789 Pfam PF08497 Radical SAM N-terminal 23 372 9.5E-142 T 10-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal VF_1726 b26fdf63bebf7d838d525ccaa2da7b51 789 SMART SM00729 369 619 2.1E-4 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VF_1726 b26fdf63bebf7d838d525ccaa2da7b51 789 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 23 640 49.05 T 10-10-2018 IPR022946 Uncharacterised protein family UPF0313 VF_1726 b26fdf63bebf7d838d525ccaa2da7b51 789 Gene3D G3DSA:3.80.30.20 368 632 4.1E-12 T 10-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VF_0217 5745b1426f486bfcfbe8b21bbc927d25 168 Pfam PF09523 Protein of unknown function (DUF2390) 22 122 1.7E-25 T 10-10-2018 IPR012659 Conserved hypothetical protein CHP02444 VF_0217 5745b1426f486bfcfbe8b21bbc927d25 168 TIGRFAM TIGR02444 TIGR02444: TIGR02444 family protein 20 125 7.4E-23 T 10-10-2018 IPR012659 Conserved hypothetical protein CHP02444 VF_A0889 8c7adcda7e3014be23c148e3ad6485df 168 ProSitePatterns PS01265 Tpx family signature. 83 94 - T 10-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 VF_A0889 8c7adcda7e3014be23c148e3ad6485df 168 SUPERFAMILY SSF52833 1 162 7.08E-36 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_A0889 8c7adcda7e3014be23c148e3ad6485df 168 Gene3D G3DSA:3.40.30.10 1 167 2.0E-41 T 10-10-2018 VF_A0889 8c7adcda7e3014be23c148e3ad6485df 168 Pfam PF08534 Redoxin 20 160 8.4E-20 T 10-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 VF_1630 c0b841d79390a04f537a0b88b740468d 528 Pfam PF03553 Na+/H+ antiporter family 165 495 4.9E-101 T 10-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 VF_0390 daf2c65a8510fb52f8c957d25dd7f3eb 187 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 9 183 1.4E-47 T 10-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related VF_0390 daf2c65a8510fb52f8c957d25dd7f3eb 187 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 6 182 2.2E-48 T 10-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 VF_0390 daf2c65a8510fb52f8c957d25dd7f3eb 187 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 3 185 23.813 T 10-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 VF_0390 daf2c65a8510fb52f8c957d25dd7f3eb 187 PIRSF PIRSF028513 3 185 6.5E-31 T 10-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 VF_0390 daf2c65a8510fb52f8c957d25dd7f3eb 187 Gene3D G3DSA:2.60.450.10 59 187 1.3E-38 T 10-10-2018 VF_A0681 3ad72c882feeb31cc940d5b485481c59 321 SUPERFAMILY SSF53300 80 279 9.64E-40 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_A0681 3ad72c882feeb31cc940d5b485481c59 321 Pfam PF00092 von Willebrand factor type A domain 84 277 7.0E-31 T 10-10-2018 IPR002035 von Willebrand factor, type A VF_A0681 3ad72c882feeb31cc940d5b485481c59 321 SMART SM00327 82 284 7.3E-23 T 10-10-2018 IPR002035 von Willebrand factor, type A VF_A0681 3ad72c882feeb31cc940d5b485481c59 321 Gene3D G3DSA:3.40.50.410 81 284 2.4E-66 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_0377 f7d265c4b15eb24ccfeb56292fcf18c7 1277 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 3 1268 0.0 T 10-10-2018 IPR011836 Conserved hypothetical protein CHP02099 VF_0377 f7d265c4b15eb24ccfeb56292fcf18c7 1277 Pfam PF13116 Protein of unknown function 496 780 7.4E-92 T 10-10-2018 IPR025263 Domain of unknown function DUF3971 VF_0377 f7d265c4b15eb24ccfeb56292fcf18c7 1277 Pfam PF13502 AsmA-like C-terminal region 1017 1258 4.1E-56 T 10-10-2018 IPR032712 AsmA-like, C-terminal VF_1901 08bf7706e1a050d957f6f3b1b969c46e 119 Pfam PF11169 Protein of unknown function (DUF2956) 12 115 1.1E-40 T 10-10-2018 IPR021339 Protein of unknown function DUF2956 VF_1128 c3d8120a4d33fc5671715102f6aa6455 629 Pfam PF13476 AAA domain 8 215 8.7E-10 T 10-10-2018 IPR038729 Rad50/SbcC-type AAA domain VF_1128 c3d8120a4d33fc5671715102f6aa6455 629 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 227 313 2.3E-8 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VF_1128 c3d8120a4d33fc5671715102f6aa6455 629 Gene3D G3DSA:3.40.50.300 4 336 2.1E-30 T 10-10-2018 VF_1128 c3d8120a4d33fc5671715102f6aa6455 629 SUPERFAMILY SSF52540 1 327 1.86E-22 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1965 077e1d270abbb5aa24c8336900073c95 126 Pfam PF11944 Protein of unknown function (DUF3461) 1 126 5.3E-55 T 10-10-2018 IPR020911 Uncharacterised protein family UPF0325 VF_1965 077e1d270abbb5aa24c8336900073c95 126 Hamap MF_01519 UPF0325 protein YaeH [yaeH]. 1 126 29.248 T 10-10-2018 IPR020911 Uncharacterised protein family UPF0325 VF_1965 077e1d270abbb5aa24c8336900073c95 126 ProDom PD080106 UPF0325 YAEH STRUCTURAL ECA1027 VV11856 YPTB3007 PBPRA2971 VV2560 VF1965 VC2264 1 114 2.0E-60 T 10-10-2018 IPR020911 Uncharacterised protein family UPF0325 VF_1084 35fb1b9aa761d4890dc1c95f0d6a11b9 441 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 10 410 9.5E-109 T 10-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 VF_1084 35fb1b9aa761d4890dc1c95f0d6a11b9 441 Pfam PF05525 Branched-chain amino acid transport protein 3 423 3.4E-117 T 10-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 VF_1386 92d2f2c0fdce62e628313ec2b5dcb0f5 148 Gene3D G3DSA:3.40.630.30 2 145 1.3E-12 T 10-10-2018 VF_1386 92d2f2c0fdce62e628313ec2b5dcb0f5 148 SUPERFAMILY SSF55729 18 107 1.34E-15 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_1386 92d2f2c0fdce62e628313ec2b5dcb0f5 148 Pfam PF13673 Acetyltransferase (GNAT) domain 21 112 2.0E-5 T 10-10-2018 IPR000182 GNAT domain VF_A0153 ed367bc4c82144e67c599e9ba1f45a58 400 Gene3D G3DSA:1.20.1720.10 11 385 4.9E-101 T 10-10-2018 VF_A0153 ed367bc4c82144e67c599e9ba1f45a58 400 Pfam PF07690 Major Facilitator Superfamily 15 354 3.9E-41 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_A0153 ed367bc4c82144e67c599e9ba1f45a58 400 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 7 381 2.1E-62 T 10-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 VF_A0153 ed367bc4c82144e67c599e9ba1f45a58 400 SUPERFAMILY SSF103473 12 380 2.22E-56 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0593 bb5b2d43ed9d703d8f77629a89e81e1e 153 SUPERFAMILY SSF46689 1 74 8.72E-12 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_A0593 bb5b2d43ed9d703d8f77629a89e81e1e 153 Gene3D G3DSA:1.10.357.10 1 153 5.6E-61 T 10-10-2018 VF_2331 8078018a2a587c6a980ceb3898d846e9 287 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 286 48.524 T 10-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 VF_2331 8078018a2a587c6a980ceb3898d846e9 287 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 49 284 7.5E-84 T 10-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 VF_2331 8078018a2a587c6a980ceb3898d846e9 287 Pfam PF02666 Phosphatidylserine decarboxylase 63 282 6.6E-59 T 10-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 VF_A0754 09c6a6769fa6e3033ef4f4e5dd3f604d 617 Gene3D G3DSA:3.60.21.70 290 533 7.9E-9 T 10-10-2018 IPR038607 PhoD-like superfamily VF_A0754 09c6a6769fa6e3033ef4f4e5dd3f604d 617 SUPERFAMILY SSF56300 295 533 1.14E-8 T 10-10-2018 VF_A0457 3b84520b35308a7cd739c597b0d53f72 211 SUPERFAMILY SSF52833 30 210 6.6E-28 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_A0457 3b84520b35308a7cd739c597b0d53f72 211 Pfam PF13462 Thioredoxin 52 199 4.3E-7 T 10-10-2018 IPR012336 Thioredoxin-like fold VF_A0457 3b84520b35308a7cd739c597b0d53f72 211 Gene3D G3DSA:3.40.30.10 27 211 1.2E-45 T 10-10-2018 VF_A0329 3c57e9fc4a4e211f1448a0bdd8ee9fdd 186 Pfam PF07603 Protein of unknown function (DUF1566) 41 183 1.1E-23 T 10-10-2018 IPR011460 Protein of unknown function DUF1566 VF_A0416 e4e1efda4d3d77cfa15777b3ab8fc19f 113 Gene3D G3DSA:3.30.70.1240 2 113 1.4E-38 T 10-10-2018 IPR023389 DOPA-like superfamily VF_A0416 e4e1efda4d3d77cfa15777b3ab8fc19f 113 SUPERFAMILY SSF143410 5 110 4.71E-39 T 10-10-2018 IPR023389 DOPA-like superfamily VF_A0416 e4e1efda4d3d77cfa15777b3ab8fc19f 113 PIRSF PIRSF028139 1 112 9.5E-37 T 10-10-2018 IPR014980 Dopa 4,5-dioxygenase VF_A0416 e4e1efda4d3d77cfa15777b3ab8fc19f 113 Pfam PF08883 Dopa 4,5-dioxygenase family 9 108 6.8E-32 T 10-10-2018 IPR014980 Dopa 4,5-dioxygenase VF_A0176 7fa4d8e23c51615fa6fe661fd875ebf9 103 Pfam PF12840 Helix-turn-helix domain 7 69 1.8E-11 T 10-10-2018 VF_A0176 7fa4d8e23c51615fa6fe661fd875ebf9 103 Gene3D G3DSA:1.10.10.10 2 96 5.1E-18 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0176 7fa4d8e23c51615fa6fe661fd875ebf9 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 1.9E-5 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_A0176 7fa4d8e23c51615fa6fe661fd875ebf9 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 1.9E-5 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_A0176 7fa4d8e23c51615fa6fe661fd875ebf9 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 1.9E-5 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_A0176 7fa4d8e23c51615fa6fe661fd875ebf9 103 SMART SM00418 8 89 3.3E-4 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VF_A0176 7fa4d8e23c51615fa6fe661fd875ebf9 103 SUPERFAMILY SSF46785 1 94 4.2E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_0963 a6296c708d8b87e4a0c7add63f9176c7 188 Gene3D G3DSA:3.30.1330.60 58 188 4.9E-42 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_0963 a6296c708d8b87e4a0c7add63f9176c7 188 PRINTS PR01021 OMPA domain signature 118 133 5.7E-16 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_0963 a6296c708d8b87e4a0c7add63f9176c7 188 PRINTS PR01021 OMPA domain signature 88 110 5.7E-16 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_0963 a6296c708d8b87e4a0c7add63f9176c7 188 PRINTS PR01021 OMPA domain signature 133 149 5.7E-16 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VF_0963 a6296c708d8b87e4a0c7add63f9176c7 188 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 5 188 30.931 T 10-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 VF_0963 a6296c708d8b87e4a0c7add63f9176c7 188 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 85 188 2.7E-44 T 10-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 VF_0963 a6296c708d8b87e4a0c7add63f9176c7 188 SUPERFAMILY SSF103088 80 188 2.49E-34 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_0963 a6296c708d8b87e4a0c7add63f9176c7 188 ProSitePatterns PS01068 OmpA-like domain. 120 164 - T 10-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 VF_0963 a6296c708d8b87e4a0c7add63f9176c7 188 Pfam PF00691 OmpA family 87 182 2.2E-23 T 10-10-2018 IPR006665 OmpA-like domain VF_A1043 1326a348c246599972ebfbd7eb72dfec 225 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_A1043 1326a348c246599972ebfbd7eb72dfec 225 Gene3D G3DSA:3.40.50.300 2 224 9.4E-67 T 10-10-2018 VF_A1043 1326a348c246599972ebfbd7eb72dfec 225 SMART SM00382 33 221 1.6E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A1043 1326a348c246599972ebfbd7eb72dfec 225 Pfam PF00005 ABC transporter 24 170 1.3E-34 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_A1043 1326a348c246599972ebfbd7eb72dfec 225 SUPERFAMILY SSF52540 5 222 4.84E-63 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0235 115e638df6ddd45d7a7322b7753b0722 284 SUPERFAMILY SSF81338 9 256 1.15E-72 T 10-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VF_A0235 115e638df6ddd45d7a7322b7753b0722 284 ProSitePatterns PS00221 MIP family signature. 68 76 - T 10-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 VF_A0235 115e638df6ddd45d7a7322b7753b0722 284 TIGRFAM TIGR00861 MIP: MIP family channel proteins 15 252 1.7E-68 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_A0235 115e638df6ddd45d7a7322b7753b0722 284 Pfam PF00230 Major intrinsic protein 6 252 3.3E-64 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_A0235 115e638df6ddd45d7a7322b7753b0722 284 PRINTS PR00783 Major intrinsic protein family signature 87 106 2.9E-50 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_A0235 115e638df6ddd45d7a7322b7753b0722 284 PRINTS PR00783 Major intrinsic protein family signature 11 30 2.9E-50 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_A0235 115e638df6ddd45d7a7322b7753b0722 284 PRINTS PR00783 Major intrinsic protein family signature 235 255 2.9E-50 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_A0235 115e638df6ddd45d7a7322b7753b0722 284 PRINTS PR00783 Major intrinsic protein family signature 186 208 2.9E-50 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_A0235 115e638df6ddd45d7a7322b7753b0722 284 PRINTS PR00783 Major intrinsic protein family signature 50 74 2.9E-50 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_A0235 115e638df6ddd45d7a7322b7753b0722 284 PRINTS PR00783 Major intrinsic protein family signature 153 171 2.9E-50 T 10-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VF_A0235 115e638df6ddd45d7a7322b7753b0722 284 Gene3D G3DSA:1.20.1080.10 4 260 1.0E-95 T 10-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VF_0167 c71a4a34c7121ff92a4b32918591344d 299 Gene3D G3DSA:3.90.550.10 1 293 1.5E-86 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0167 c71a4a34c7121ff92a4b32918591344d 299 SUPERFAMILY SSF53448 1 287 5.18E-93 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0167 c71a4a34c7121ff92a4b32918591344d 299 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 4.2E-155 T 10-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 VF_0167 c71a4a34c7121ff92a4b32918591344d 299 Pfam PF00483 Nucleotidyl transferase 2 238 2.0E-71 T 10-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VF_0168 5b0ad07ff9b024321eef32a5176fdad8 185 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 5 174 4.3E-71 T 10-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 VF_0168 5b0ad07ff9b024321eef32a5176fdad8 185 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 175 1.0E-99 T 10-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 VF_0168 5b0ad07ff9b024321eef32a5176fdad8 185 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 3 176 1.1E-76 T 10-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 VF_0168 5b0ad07ff9b024321eef32a5176fdad8 185 Gene3D G3DSA:2.60.120.10 1 179 1.6E-73 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_0168 5b0ad07ff9b024321eef32a5176fdad8 185 SUPERFAMILY SSF51182 1 177 5.43E-73 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_A0987 86da041748687659435245d0f2ad035c 216 Pfam PF01081 KDPG and KHG aldolase 8 200 2.3E-74 T 10-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VF_A0987 86da041748687659435245d0f2ad035c 216 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 38 47 - T 10-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VF_A0987 86da041748687659435245d0f2ad035c 216 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 126 139 - T 10-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VF_A0987 86da041748687659435245d0f2ad035c 216 Gene3D G3DSA:3.20.20.70 2 211 2.2E-74 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_A0987 86da041748687659435245d0f2ad035c 216 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 7 206 8.5E-82 T 10-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VF_A0987 86da041748687659435245d0f2ad035c 216 SUPERFAMILY SSF51569 4 208 5.68E-68 T 10-10-2018 VF_0812 c2faffe9f491a9c4cf6abaecd2c603d3 175 PIRSF PIRSF038996 1 172 2.2E-67 T 10-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 VF_0812 c2faffe9f491a9c4cf6abaecd2c603d3 175 TIGRFAM TIGR01752 flav_long: flavodoxin 4 168 7.1E-73 T 10-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 VF_0812 c2faffe9f491a9c4cf6abaecd2c603d3 175 Gene3D G3DSA:3.40.50.360 3 175 5.4E-55 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_0812 c2faffe9f491a9c4cf6abaecd2c603d3 175 SUPERFAMILY SSF52218 4 171 3.88E-51 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_0812 c2faffe9f491a9c4cf6abaecd2c603d3 175 Pfam PF00258 Flavodoxin 6 160 1.4E-30 T 10-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 VF_A0120 76a692758cb7e17d435a3784ea312c17 714 Gene3D G3DSA:2.120.10.30 68 284 1.9E-6 T 10-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like VF_A0120 76a692758cb7e17d435a3784ea312c17 714 Pfam PF16130 Domain of unknown function (DUF4842) 477 703 9.2E-59 T 10-10-2018 IPR032295 Domain of unknown function DUF4842 VF_A0120 76a692758cb7e17d435a3784ea312c17 714 SUPERFAMILY SSF63829 70 250 7.85E-12 T 10-10-2018 VF_A0120 76a692758cb7e17d435a3784ea312c17 714 TIGRFAM TIGR04456 LruC_dom: LruC domain 445 703 5.5E-81 T 10-10-2018 IPR031025 LruC domain VF_2290 cd557f49aadf98f0fce5cf8b0b5e3cf2 507 Gene3D G3DSA:3.40.50.300 12 164 3.5E-7 T 10-10-2018 VF_2290 cd557f49aadf98f0fce5cf8b0b5e3cf2 507 Pfam PF05036 Sporulation related domain 420 493 7.2E-11 T 10-10-2018 IPR007730 Sporulation-like domain GO:0042834 VF_2290 cd557f49aadf98f0fce5cf8b0b5e3cf2 507 SUPERFAMILY SSF52540 21 221 2.43E-11 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2290 cd557f49aadf98f0fce5cf8b0b5e3cf2 507 SUPERFAMILY SSF110997 420 482 1.83E-5 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VF_2290 cd557f49aadf98f0fce5cf8b0b5e3cf2 507 Gene3D G3DSA:3.30.70.1070 408 504 8.8E-25 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VF_2290 cd557f49aadf98f0fce5cf8b0b5e3cf2 507 Pfam PF13401 AAA domain 33 133 2.2E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0507 04c4e93bc0e7a5e4e80a02c74926cc45 238 Pfam PF01048 Phosphorylase superfamily 15 216 4.1E-38 T 10-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VF_0507 04c4e93bc0e7a5e4e80a02c74926cc45 238 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 234 5.7E-116 T 10-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 VF_0507 04c4e93bc0e7a5e4e80a02c74926cc45 238 SUPERFAMILY SSF53167 3 234 8.25E-90 T 10-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VF_0507 04c4e93bc0e7a5e4e80a02c74926cc45 238 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 10-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 VF_0507 04c4e93bc0e7a5e4e80a02c74926cc45 238 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 50.54 T 10-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 VF_0507 04c4e93bc0e7a5e4e80a02c74926cc45 238 Gene3D G3DSA:3.40.50.1580 1 237 3.7E-75 T 10-10-2018 VF_1940 06126a0aaa1f2fba87b51d0423f5d9f7 230 Pfam PF06930 Protein of unknown function (DUF1282) 14 222 1.3E-29 T 10-10-2018 IPR009698 Protein of unknown function DUF1282 VF_A0293 1b69d17b638d765b0ffcd11f5fce3dc5 226 Gene3D G3DSA:1.10.150.240 16 95 5.0E-62 T 10-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VF_A0293 1b69d17b638d765b0ffcd11f5fce3dc5 226 Gene3D G3DSA:3.40.50.1000 5 219 5.0E-62 T 10-10-2018 IPR023214 HAD superfamily VF_A0293 1b69d17b638d765b0ffcd11f5fce3dc5 226 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 3 223 3.1E-72 T 10-10-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 VF_A0293 1b69d17b638d765b0ffcd11f5fce3dc5 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 138 154 1.0E-7 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_A0293 1b69d17b638d765b0ffcd11f5fce3dc5 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 1.0E-7 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_A0293 1b69d17b638d765b0ffcd11f5fce3dc5 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 107 120 1.0E-7 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_A0293 1b69d17b638d765b0ffcd11f5fce3dc5 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 185 198 1.0E-7 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_A0293 1b69d17b638d765b0ffcd11f5fce3dc5 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 195 2.9E-24 T 10-10-2018 VF_A0293 1b69d17b638d765b0ffcd11f5fce3dc5 226 SUPERFAMILY SSF56784 2 224 1.68E-48 T 10-10-2018 IPR036412 HAD-like superfamily VF_A0293 1b69d17b638d765b0ffcd11f5fce3dc5 226 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 109 190 4.6E-15 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VF_A0543 4f48488d6949757159207bf27dea2540 167 SUPERFAMILY SSF56712 59 164 1.05E-11 T 10-10-2018 IPR023405 DNA topoisomerase, type IA, core domain VF_A0543 4f48488d6949757159207bf27dea2540 167 Gene3D G3DSA:1.10.460.10 128 164 7.3E-8 T 10-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 VF_A0543 4f48488d6949757159207bf27dea2540 167 Pfam PF01131 DNA topoisomerase 58 164 6.9E-9 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VF_A0543 4f48488d6949757159207bf27dea2540 167 Gene3D G3DSA:2.60.510.20 57 127 7.3E-8 T 10-10-2018 VF_0212 2dd7ecb37c39b6744bc0dec7b1ccbe78 302 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 14 297 2.2E-105 T 10-10-2018 VF_0212 2dd7ecb37c39b6744bc0dec7b1ccbe78 302 PIRSF PIRSF005355 1 302 8.7E-85 T 10-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 VF_0212 2dd7ecb37c39b6744bc0dec7b1ccbe78 302 Pfam PF01040 UbiA prenyltransferase family 22 279 6.3E-35 T 10-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 VF_0212 2dd7ecb37c39b6744bc0dec7b1ccbe78 302 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 5 298 20.643 T 10-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 VF_0192 bfd094e279ec6aa94e5d2f0300ca03eb 367 Gene3D G3DSA:2.60.120.10 250 365 1.7E-28 T 10-10-2018 IPR014710 RmlC-like jelly roll fold VF_0192 bfd094e279ec6aa94e5d2f0300ca03eb 367 SUPERFAMILY SSF51735 1 245 6.45E-41 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0192 bfd094e279ec6aa94e5d2f0300ca03eb 367 SUPERFAMILY SSF51182 237 363 1.96E-22 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily VF_0192 bfd094e279ec6aa94e5d2f0300ca03eb 367 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 190 1.3E-15 T 10-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 VF_0192 bfd094e279ec6aa94e5d2f0300ca03eb 367 Gene3D G3DSA:3.40.50.720 1 248 7.0E-83 T 10-10-2018 VF_1158 8f8b0dd88fb84921e19ce5f2de904908 183 SUPERFAMILY SSF55166 66 183 1.53E-34 T 10-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VF_1158 8f8b0dd88fb84921e19ce5f2de904908 183 Gene3D G3DSA:3.30.1380.10 61 183 1.9E-11 T 10-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VF_1158 8f8b0dd88fb84921e19ce5f2de904908 183 Pfam PF05951 Bacterial protein of unknown function (DUF882) 34 183 2.0E-65 T 10-10-2018 IPR010275 Protein of unknown function DUF882 VF_1412 6547ae35c51a38e3a1a8abe0b112dde3 111 Pfam PF12290 Protein of unknown function (DUF3802) 1 109 1.4E-48 T 10-10-2018 IPR020979 Uncharacterised protein family A0KLC6 VF_A0996 2235765dc948329b8bb2ecc05ae19a93 349 Gene3D G3DSA:1.50.10.10 4 348 3.9E-109 T 10-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 VF_A0996 2235765dc948329b8bb2ecc05ae19a93 349 SUPERFAMILY SSF48208 7 348 5.35E-56 T 10-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 VF_A0996 2235765dc948329b8bb2ecc05ae19a93 349 Pfam PF07470 Glycosyl Hydrolase Family 88 18 347 9.6E-78 T 10-10-2018 IPR010905 Glycosyl hydrolase, family 88 VF_A0344 2cc94a913591070e12e2a623f38ac9fc 476 Gene3D G3DSA:3.20.20.450 238 476 3.3E-63 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0344 2cc94a913591070e12e2a623f38ac9fc 476 Pfam PF00563 EAL domain 239 464 5.8E-55 T 10-10-2018 IPR001633 EAL domain VF_A0344 2cc94a913591070e12e2a623f38ac9fc 476 SUPERFAMILY SSF141868 240 475 2.22E-66 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0344 2cc94a913591070e12e2a623f38ac9fc 476 SMART SM00052 231 469 2.8E-60 T 10-10-2018 IPR001633 EAL domain VF_A0344 2cc94a913591070e12e2a623f38ac9fc 476 Pfam PF12792 CSS motif domain associated with EAL 36 100 2.5E-11 T 10-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain VF_A0426 597956fd7a9c9f9390bf719f95da9cbf 65 SUPERFAMILY SSF158997 1 54 8.63E-21 T 10-10-2018 VF_A0426 597956fd7a9c9f9390bf719f95da9cbf 65 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 28.393 T 10-10-2018 IPR038053 Uncharacterised protein family UPF0434 VF_A0426 597956fd7a9c9f9390bf719f95da9cbf 65 Gene3D G3DSA:2.20.25.10 8 64 4.3E-26 T 10-10-2018 VF_A0426 597956fd7a9c9f9390bf719f95da9cbf 65 Pfam PF03966 Trm112p-like protein 2 41 4.1E-12 T 10-10-2018 IPR005651 Trm112-like VF_A0195 bf551e7d8bb6c03a2ece97933324a229 134 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 132 3.4E-28 T 10-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 VF_A0195 bf551e7d8bb6c03a2ece97933324a229 134 Gene3D G3DSA:3.30.420.270 60 129 2.3E-11 T 10-10-2018 VF_0368 b080bcf167e11d4882680254caa1a3a8 193 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 30 1.3E-4 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0368 b080bcf167e11d4882680254caa1a3a8 193 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0368 b080bcf167e11d4882680254caa1a3a8 193 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 30 2.5E-4 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_A0483 108148ada931d22b9ed9e59a48c3cf6a 365 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 9 351 5.9E-117 T 10-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_A0483 108148ada931d22b9ed9e59a48c3cf6a 365 Pfam PF01098 Cell cycle protein 13 351 2.8E-96 T 10-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_A0483 108148ada931d22b9ed9e59a48c3cf6a 365 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 3 358 27.642 T 10-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VF_2102 9253d7a07bba9f8467475fdb7792a85c 189 SUPERFAMILY SSF101327 7 176 2.35E-48 T 10-10-2018 IPR036255 YgfB-like superfamily VF_2102 9253d7a07bba9f8467475fdb7792a85c 189 Gene3D G3DSA:1.20.120.740 4 189 5.7E-50 T 10-10-2018 VF_2102 9253d7a07bba9f8467475fdb7792a85c 189 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 5 188 31.143 T 10-10-2018 IPR011978 Uncharacterised protein family UPF0149 VF_2102 9253d7a07bba9f8467475fdb7792a85c 189 Pfam PF03695 Uncharacterised protein family (UPF0149) 13 177 2.1E-38 T 10-10-2018 IPR011978 Uncharacterised protein family UPF0149 VF_2010 e0a67ebfa42228a8a420d7fe3564d274 157 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 125 4.7E-25 T 10-10-2018 IPR009678 Bacteriophage tail completion protein R VF_1146 d64ec13d763184866d0fdf1cf912e505 789 Gene3D G3DSA:2.10.10.20 38 91 4.2E-12 T 10-10-2018 VF_1146 d64ec13d763184866d0fdf1cf912e505 789 SMART SM00495 46 87 0.0037 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1146 d64ec13d763184866d0fdf1cf912e505 789 SUPERFAMILY SSF51055 42 91 4.9E-13 T 10-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_1146 d64ec13d763184866d0fdf1cf912e505 789 Pfam PF14600 Cellulose-binding domain 38 91 4.2E-14 T 10-10-2018 IPR032798 Endoglucanase Z, cellulose-binding domain KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VF_A0768 3b8964ecb41d1a54021107b5335b6e95 410 TIGRFAM TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein 3 404 6.4E-161 T 10-10-2018 IPR011340 Cysteine desulfurase-related VF_A0768 3b8964ecb41d1a54021107b5335b6e95 410 SUPERFAMILY SSF53383 5 406 9.76E-90 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_A0768 3b8964ecb41d1a54021107b5335b6e95 410 Gene3D G3DSA:3.90.1150.10 24 403 1.2E-132 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_A0768 3b8964ecb41d1a54021107b5335b6e95 410 Gene3D G3DSA:3.40.640.10 33 289 1.2E-132 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VF_A0768 3b8964ecb41d1a54021107b5335b6e95 410 Pfam PF00266 Aminotransferase class-V 25 402 1.2E-67 T 10-10-2018 IPR000192 Aminotransferase class V domain VF_A0462 2e102b72d70bffed81ce550941e4f732 402 Pfam PF02687 FtsX-like permease family 296 394 1.5E-10 T 10-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VF_A0462 2e102b72d70bffed81ce550941e4f732 402 Pfam PF12704 MacB-like periplasmic core domain 29 208 3.5E-15 T 10-10-2018 IPR025857 MacB-like periplasmic core domain VF_A0462 2e102b72d70bffed81ce550941e4f732 402 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 402 4.7E-135 T 10-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 VF_0720 695945688684f421e89a72d378feda79 447 Gene3D G3DSA:1.20.1250.20 14 221 5.8E-11 T 10-10-2018 VF_0720 695945688684f421e89a72d378feda79 447 SUPERFAMILY SSF103473 8 434 9.81E-34 T 10-10-2018 IPR036259 MFS transporter superfamily VF_0720 695945688684f421e89a72d378feda79 447 Pfam PF07690 Major Facilitator Superfamily 22 342 2.7E-16 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_0720 695945688684f421e89a72d378feda79 447 Gene3D G3DSA:1.20.1250.20 248 445 3.5E-12 T 10-10-2018 VF_2006 8eda56d59b539463d8d4fd98791916a1 235 Pfam PF05944 Phage small terminase subunit 52 174 8.5E-10 T 10-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 VF_1943 218f1026352a9182c4859ef159670632 103 Gene3D G3DSA:1.10.760.10 21 103 9.2E-26 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_1943 218f1026352a9182c4859ef159670632 103 SUPERFAMILY SSF46626 5 103 6.88E-22 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_1943 218f1026352a9182c4859ef159670632 103 Pfam PF00034 Cytochrome c 31 103 6.3E-9 T 10-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_1512 152dbebc72d77b9116712e8c7a723fec 213 Pfam PF05724 Thiopurine S-methyltransferase (TPMT) 1 212 5.5E-71 T 10-10-2018 IPR008854 TPMT family GO:0008757 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 VF_1512 152dbebc72d77b9116712e8c7a723fec 213 TIGRFAM TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family 4 212 1.5E-77 T 10-10-2018 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification GO:0008119|GO:0010038|GO:0032259 KEGG: 00983+2.1.1.67 VF_1512 152dbebc72d77b9116712e8c7a723fec 213 Gene3D G3DSA:3.40.50.150 1 213 2.4E-59 T 10-10-2018 VF_1512 152dbebc72d77b9116712e8c7a723fec 213 PIRSF PIRSF023956 1 213 1.9E-71 T 10-10-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 VF_1512 152dbebc72d77b9116712e8c7a723fec 213 Hamap MF_00812 Thiopurine S-methyltransferase [tpm]. 1 213 35.624 T 10-10-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 VF_1512 152dbebc72d77b9116712e8c7a723fec 213 SUPERFAMILY SSF53335 1 211 7.75E-52 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_A1172 48ced9ceacc8849810c885f5023ce695 411 Pfam PF13614 AAA domain 114 299 7.4E-23 T 10-10-2018 IPR025669 AAA domain VF_A1172 48ced9ceacc8849810c885f5023ce695 411 SUPERFAMILY SSF52540 112 370 3.71E-30 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A1172 48ced9ceacc8849810c885f5023ce695 411 Gene3D G3DSA:3.40.50.300 114 401 5.6E-54 T 10-10-2018 VF_A1074 34bd59427f5bc1a6abcf891a2951b4db 251 Gene3D G3DSA:3.40.190.10 103 211 1.2E-74 T 10-10-2018 VF_A1074 34bd59427f5bc1a6abcf891a2951b4db 251 Pfam PF13531 Bacterial extracellular solute-binding protein 28 247 3.9E-26 T 10-10-2018 VF_A1074 34bd59427f5bc1a6abcf891a2951b4db 251 Gene3D G3DSA:3.40.190.10 29 247 1.2E-74 T 10-10-2018 VF_A1074 34bd59427f5bc1a6abcf891a2951b4db 251 SUPERFAMILY SSF53850 24 247 5.6E-30 T 10-10-2018 VF_A0847 c31f909e534ebcb249cdee4ae76ba35e 444 Gene3D G3DSA:3.75.10.20 1 444 1.8E-204 T 10-10-2018 IPR037031 Succinylarginine dihydrolase superfamily GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 VF_A0847 c31f909e534ebcb249cdee4ae76ba35e 444 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 444 59.562 T 10-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 VF_A0847 c31f909e534ebcb249cdee4ae76ba35e 444 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 4 443 2.2E-227 T 10-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 VF_A0847 c31f909e534ebcb249cdee4ae76ba35e 444 Pfam PF04996 Succinylarginine dihydrolase 3 443 3.0E-222 T 10-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 VF_A0847 c31f909e534ebcb249cdee4ae76ba35e 444 SUPERFAMILY SSF55909 3 444 2.45E-205 T 10-10-2018 VF_0853 28ccf802b8348db00480fcb9ef2188ce 148 Pfam PF13279 Thioesterase-like superfamily 23 125 4.8E-12 T 10-10-2018 VF_0853 28ccf802b8348db00480fcb9ef2188ce 148 Gene3D G3DSA:3.10.129.10 16 146 2.6E-27 T 10-10-2018 VF_0853 28ccf802b8348db00480fcb9ef2188ce 148 SUPERFAMILY SSF54637 18 143 4.52E-31 T 10-10-2018 IPR029069 HotDog domain superfamily VF_A1090 dc6ea0f24523372dd2e9b452ae31428a 261 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 260 1.6E-15 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_A1090 dc6ea0f24523372dd2e9b452ae31428a 261 SUPERFAMILY SSF161098 8 258 3.92E-41 T 10-10-2018 IPR035906 MetI-like superfamily VF_A1090 dc6ea0f24523372dd2e9b452ae31428a 261 Gene3D G3DSA:1.10.3720.10 1 255 2.2E-36 T 10-10-2018 IPR035906 MetI-like superfamily VF_0013 eee6b590b4abafa68a0300a8aa133f7f 144 Pfam PF00011 Hsp20/alpha crystallin family 42 137 2.3E-19 T 10-10-2018 IPR002068 Alpha crystallin/Hsp20 domain VF_0013 eee6b590b4abafa68a0300a8aa133f7f 144 SUPERFAMILY SSF49764 13 138 3.84E-22 T 10-10-2018 IPR008978 HSP20-like chaperone VF_0013 eee6b590b4abafa68a0300a8aa133f7f 144 Gene3D G3DSA:2.60.40.790 33 137 1.5E-22 T 10-10-2018 IPR008978 HSP20-like chaperone VF_0958 7849670b3555de368a1191e0339d72b6 228 Pfam PF01618 MotA/TolQ/ExbB proton channel family 80 207 5.8E-42 T 10-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VF_0958 7849670b3555de368a1191e0339d72b6 228 TIGRFAM TIGR02796 tolQ: protein TolQ 6 220 1.5E-91 T 10-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 VF_0958 7849670b3555de368a1191e0339d72b6 228 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 5 225 43.745 T 10-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 VF_1737 6b737f0fc30b86fea7d09fc481c22047 268 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 3 263 5.4E-113 T 10-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 VF_1737 6b737f0fc30b86fea7d09fc481c22047 268 SUPERFAMILY SSF56752 1 259 1.57E-68 T 10-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 VF_1737 6b737f0fc30b86fea7d09fc481c22047 268 ProSitePatterns PS00770 Aminotransferases class-IV signature. 173 202 - T 10-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 VF_1737 6b737f0fc30b86fea7d09fc481c22047 268 Pfam PF01063 Amino-transferase class IV 24 247 2.0E-45 T 10-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 VF_1737 6b737f0fc30b86fea7d09fc481c22047 268 Gene3D G3DSA:3.20.10.10 121 265 1.4E-45 T 10-10-2018 VF_1737 6b737f0fc30b86fea7d09fc481c22047 268 Gene3D G3DSA:3.30.470.10 1 107 4.7E-30 T 10-10-2018 VF_A0978 9c5a282d32ce69693a7906c636f145a4 289 Gene3D G3DSA:3.40.190.290 92 289 1.7E-45 T 10-10-2018 VF_A0978 9c5a282d32ce69693a7906c636f145a4 289 SUPERFAMILY SSF46785 1 86 2.45E-23 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0978 9c5a282d32ce69693a7906c636f145a4 289 Pfam PF03466 LysR substrate binding domain 88 287 1.6E-41 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0978 9c5a282d32ce69693a7906c636f145a4 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.4E-9 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0978 9c5a282d32ce69693a7906c636f145a4 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.4E-9 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0978 9c5a282d32ce69693a7906c636f145a4 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.4E-9 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0978 9c5a282d32ce69693a7906c636f145a4 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 6.1E-19 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0978 9c5a282d32ce69693a7906c636f145a4 289 Gene3D G3DSA:1.10.10.10 1 91 2.3E-26 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0978 9c5a282d32ce69693a7906c636f145a4 289 SUPERFAMILY SSF53850 90 288 1.88E-37 T 10-10-2018 VF_A0096 c44d05e184ed1c1ad5b8efe17db2ccc1 553 Gene3D G3DSA:1.10.3720.10 2 282 2.3E-18 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0096 c44d05e184ed1c1ad5b8efe17db2ccc1 553 Gene3D G3DSA:1.10.3720.10 300 545 9.0E-20 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0096 c44d05e184ed1c1ad5b8efe17db2ccc1 553 SUPERFAMILY SSF161098 302 541 2.75E-25 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0096 c44d05e184ed1c1ad5b8efe17db2ccc1 553 SUPERFAMILY SSF161098 5 276 5.56E-24 T 10-10-2018 IPR035906 MetI-like superfamily VF_A0571 27d079e6df1e051e571311c9a5060859 304 SUPERFAMILY SSF47823 18 114 1.29E-21 T 10-10-2018 VF_A0571 27d079e6df1e051e571311c9a5060859 304 Gene3D G3DSA:1.10.443.10 116 290 2.2E-32 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VF_A0571 27d079e6df1e051e571311c9a5060859 304 Pfam PF00589 Phage integrase family 131 288 1.6E-12 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VF_A0571 27d079e6df1e051e571311c9a5060859 304 Gene3D G3DSA:1.10.150.130 14 115 1.0E-15 T 10-10-2018 IPR010998 Integrase/recombinase, N-terminal VF_A0571 27d079e6df1e051e571311c9a5060859 304 SUPERFAMILY SSF56349 114 294 9.71E-34 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VF_0169 c763a40daee1f8a9f8f18932d37b3504 271 Gene3D G3DSA:3.40.50.720 1 269 1.1E-33 T 10-10-2018 VF_0169 c763a40daee1f8a9f8f18932d37b3504 271 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 202 6.1E-17 T 10-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 VF_0169 c763a40daee1f8a9f8f18932d37b3504 271 SUPERFAMILY SSF51735 2 269 8.9E-35 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_1244 143b2763ca83eaf6e0e13228e940493e 302 Pfam PF13509 S1 domain 28 87 3.3E-22 T 10-10-2018 IPR039566 Conserved virulence factor B, S1 domain VF_1244 143b2763ca83eaf6e0e13228e940493e 302 Pfam PF13509 S1 domain 94 155 4.0E-5 T 10-10-2018 IPR039566 Conserved virulence factor B, S1 domain VF_1244 143b2763ca83eaf6e0e13228e940493e 302 Gene3D G3DSA:2.40.50.140 171 235 3.7E-5 T 10-10-2018 VF_1244 143b2763ca83eaf6e0e13228e940493e 302 PIRSF PIRSF012524 24 302 6.7E-93 T 10-10-2018 IPR014464 Conserved virulence factor B VF_1244 143b2763ca83eaf6e0e13228e940493e 302 SMART SM00316 169 231 2.3 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_1244 143b2763ca83eaf6e0e13228e940493e 302 SMART SM00316 93 156 1.2 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_1244 143b2763ca83eaf6e0e13228e940493e 302 SMART SM00316 27 88 10.0 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_1244 143b2763ca83eaf6e0e13228e940493e 302 Gene3D G3DSA:1.10.10.10 239 301 3.7E-22 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2279 dd9b58a63d363df092ebca87e7e42a06 134 Gene3D G3DSA:3.30.300.20 35 134 1.6E-23 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta VF_2279 dd9b58a63d363df092ebca87e7e42a06 134 Pfam PF02566 OsmC-like protein 29 127 3.3E-14 T 10-10-2018 IPR003718 OsmC/Ohr family VF_2279 dd9b58a63d363df092ebca87e7e42a06 134 SUPERFAMILY SSF82784 1 132 3.27E-38 T 10-10-2018 IPR036102 OsmC/Ohr superfamily VF_2279 dd9b58a63d363df092ebca87e7e42a06 134 Gene3D G3DSA:2.20.25.10 1 34 1.3E-19 T 10-10-2018 VF_2152 f329b8dad99b6355945dcb3503d46c2f 409 TIGRFAM TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype 12 405 3.2E-204 T 10-10-2018 IPR019879 Ammonium transporter, marine subtype VF_2152 f329b8dad99b6355945dcb3503d46c2f 409 Gene3D G3DSA:1.10.3430.10 2 408 6.7E-120 T 10-10-2018 IPR029020 Ammonium/urea transporter VF_2152 f329b8dad99b6355945dcb3503d46c2f 409 ProSitePatterns PS01219 Ammonium transporters signature. 163 188 - T 10-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 VF_2152 f329b8dad99b6355945dcb3503d46c2f 409 SUPERFAMILY SSF111352 12 383 1.44E-105 T 10-10-2018 VF_2152 f329b8dad99b6355945dcb3503d46c2f 409 Pfam PF00909 Ammonium Transporter Family 18 401 6.5E-100 T 10-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 VF_B0035 fd8d20c3d709f675d0e26f940da9d6b3 343 Gene3D G3DSA:2.40.10.10 32 116 3.1E-18 T 10-10-2018 VF_B0035 fd8d20c3d709f675d0e26f940da9d6b3 343 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 47 62 4.3E-5 T 10-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VF_B0035 fd8d20c3d709f675d0e26f940da9d6b3 343 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 96 110 4.3E-5 T 10-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VF_B0035 fd8d20c3d709f675d0e26f940da9d6b3 343 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 177 189 4.3E-5 T 10-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VF_B0035 fd8d20c3d709f675d0e26f940da9d6b3 343 Pfam PF00089 Trypsin 22 202 1.2E-15 T 10-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 VF_B0035 fd8d20c3d709f675d0e26f940da9d6b3 343 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 178 189 - T 10-10-2018 IPR033116 Serine proteases, trypsin family, serine active site VF_B0035 fd8d20c3d709f675d0e26f940da9d6b3 343 Gene3D G3DSA:2.40.10.10 21 193 3.1E-18 T 10-10-2018 VF_B0035 fd8d20c3d709f675d0e26f940da9d6b3 343 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 57 62 - T 10-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 VF_B0035 fd8d20c3d709f675d0e26f940da9d6b3 343 SMART SM00020 19 205 1.1E-4 T 10-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 VF_B0035 fd8d20c3d709f675d0e26f940da9d6b3 343 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 323 343 3.4E-5 T 10-10-2018 IPR020008 GlyGly-CTERM domain VF_B0035 fd8d20c3d709f675d0e26f940da9d6b3 343 SUPERFAMILY SSF50494 20 227 1.69E-25 T 10-10-2018 IPR009003 Peptidase S1, PA clan VF_2271 5c3bd70840e819ff26d5ea6f1ee21142 275 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 72 202 2.5E-40 T 10-10-2018 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 VF_1458 6502980568cadbc00ed169458c4c0a61 376 Gene3D G3DSA:3.40.50.1100 49 363 1.7E-93 T 10-10-2018 VF_1458 6502980568cadbc00ed169458c4c0a61 376 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 66 358 4.9E-69 T 10-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VF_1458 6502980568cadbc00ed169458c4c0a61 376 SUPERFAMILY SSF53686 3 371 1.31E-84 T 10-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VF_1458 6502980568cadbc00ed169458c4c0a61 376 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 87 100 - T 10-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 VF_1458 6502980568cadbc00ed169458c4c0a61 376 Gene3D G3DSA:3.40.50.1100 95 191 1.7E-93 T 10-10-2018 VF_A0241 7da39cc0471faaa29d59ca59520ef801 362 Pfam PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family 21 344 3.1E-72 T 10-10-2018 IPR029132 Choloylglycine hydrolase/NAAA C-terminal VF_A0241 7da39cc0471faaa29d59ca59520ef801 362 Gene3D G3DSA:3.60.60.10 21 351 5.2E-108 T 10-10-2018 VF_A0241 7da39cc0471faaa29d59ca59520ef801 362 SUPERFAMILY SSF56235 21 350 1.0E-94 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VF_A0280 ac71350b8aa4844a8b97021994fa0920 323 Gene3D G3DSA:3.60.10.10 44 321 3.4E-23 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VF_A0280 ac71350b8aa4844a8b97021994fa0920 323 SUPERFAMILY SSF56219 48 321 5.37E-27 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VF_0863 e63f44c413d6dd9fc9fe1264d5375c7f 141 Gene3D G3DSA:1.20.120.10 18 139 1.2E-22 T 10-10-2018 VF_0863 e63f44c413d6dd9fc9fe1264d5375c7f 141 Pfam PF01322 Cytochrome C' 22 138 4.3E-22 T 10-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 VF_0863 e63f44c413d6dd9fc9fe1264d5375c7f 141 SUPERFAMILY SSF47175 19 138 2.65E-26 T 10-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 VF_1771 bcc30422c5c764077a964fced87ec0d3 644 PIRSF PIRSF000549 1 644 3.7E-282 T 10-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 VF_1771 bcc30422c5c764077a964fced87ec0d3 644 Pfam PF08298 PrkA AAA domain 19 380 4.6E-171 T 10-10-2018 IPR013153 PrkA AAA domain VF_1771 bcc30422c5c764077a964fced87ec0d3 644 SUPERFAMILY SSF52540 73 368 7.59E-17 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1771 bcc30422c5c764077a964fced87ec0d3 644 Pfam PF06798 PrkA serine protein kinase C-terminal domain 383 636 1.4E-70 T 10-10-2018 IPR010650 PrkA C-terminal domain VF_1771 bcc30422c5c764077a964fced87ec0d3 644 SMART SM00763 19 380 3.3E-215 T 10-10-2018 IPR013153 PrkA AAA domain VF_0944 480275a42513fe8bbc0715f4b7b1d29b 321 TIGRFAM TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog 5 317 7.3E-164 T 10-10-2018 IPR011758 Alpha-L-glutamate ligase-related protein VF_0944 480275a42513fe8bbc0715f4b7b1d29b 321 Pfam PF14397 Sugar-transfer associated ATP-grasp 21 294 3.2E-111 T 10-10-2018 IPR039523 Alpha-L-glutamate ligase-related protein, ATP-grasp domain KEGG: 00270+6.3.2.2+6.3.2.3|KEGG: 00480+6.3.2.2+6.3.2.3|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VF_0944 480275a42513fe8bbc0715f4b7b1d29b 321 SUPERFAMILY SSF56059 43 280 3.98E-19 T 10-10-2018 VF_2434 080e91637ea39890464fe92a88cc16e8 223 SUPERFAMILY SSF52402 1 216 6.14E-55 T 10-10-2018 VF_2434 080e91637ea39890464fe92a88cc16e8 223 Pfam PF01902 Diphthamide synthase 4 215 4.3E-25 T 10-10-2018 IPR002761 Diphthamide synthase domain MetaCyc: PWY-6482|MetaCyc: PWY-7546|Reactome: R-HSA-5358493 VF_2434 080e91637ea39890464fe92a88cc16e8 223 Gene3D G3DSA:3.40.50.620 1 143 2.3E-18 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_2434 080e91637ea39890464fe92a88cc16e8 223 Gene3D G3DSA:3.90.1490.10 144 223 6.4E-9 T 10-10-2018 VF_1395 d1a556cf7900dbcc539d491c10b53789 128 Gene3D G3DSA:3.10.450.40 59 121 3.1E-7 T 10-10-2018 VF_A1140 57054697d195a5eb32ed8092185af59a 92 Pfam PF11747 Killing trait 22 62 5.8E-9 T 10-10-2018 IPR021070 Killing trait, RebB VF_2270 983da4423d5f97d01d5a047efa9645c1 446 Gene3D G3DSA:2.40.170.10 57 446 1.5E-35 T 10-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 VF_2270 983da4423d5f97d01d5a047efa9645c1 446 Pfam PF02264 LamB porin 92 446 6.3E-40 T 10-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VF_2270 983da4423d5f97d01d5a047efa9645c1 446 SUPERFAMILY SSF56935 55 446 1.53E-84 T 10-10-2018 VF_2270 983da4423d5f97d01d5a047efa9645c1 446 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 117 440 6.0E-119 T 10-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VF_0367 4453fa10b0bde5195568bac1f24b2bdf 198 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 17 39 2.4E-7 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0367 4453fa10b0bde5195568bac1f24b2bdf 198 Gene3D G3DSA:3.30.700.10 20 147 5.8E-7 T 10-10-2018 VF_0367 4453fa10b0bde5195568bac1f24b2bdf 198 SUPERFAMILY SSF54523 20 103 2.35E-8 T 10-10-2018 VF_0367 4453fa10b0bde5195568bac1f24b2bdf 198 Pfam PF07963 Prokaryotic N-terminal methylation motif 15 37 2.5E-7 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2550 375cc184ec62604c76d16a189fe17773 87 Gene3D G3DSA:1.10.1580.20 1 87 4.4E-42 T 10-10-2018 IPR038134 YihD-like superfamily VF_2550 375cc184ec62604c76d16a189fe17773 87 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 4.7E-46 T 10-10-2018 IPR009383 Protein of unknown function DUF1040 VF_2550 375cc184ec62604c76d16a189fe17773 87 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 87 7.0E-45 T 10-10-2018 IPR009383 Protein of unknown function DUF1040 VF_0854 4d36218bb5a077e483aece58cc7d5bde 206 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 41 193 6.5E-9 T 10-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like VF_0854 4d36218bb5a077e483aece58cc7d5bde 206 SUPERFAMILY SSF89392 28 193 1.69E-18 T 10-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX VF_0854 4d36218bb5a077e483aece58cc7d5bde 206 Gene3D G3DSA:2.50.20.10 26 201 7.5E-24 T 10-10-2018 VF_A0492 9285ce9a0537c15cb9b1107929cfa311 367 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 3 366 2.6E-164 T 10-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 VF_A0492 9285ce9a0537c15cb9b1107929cfa311 367 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 2 366 41.91 T 10-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 VF_A0492 9285ce9a0537c15cb9b1107929cfa311 367 SUPERFAMILY SSF53067 3 340 3.49E-30 T 10-10-2018 VF_A0492 9285ce9a0537c15cb9b1107929cfa311 367 Gene3D G3DSA:3.30.420.40 143 326 1.4E-135 T 10-10-2018 VF_A0492 9285ce9a0537c15cb9b1107929cfa311 367 Gene3D G3DSA:3.30.420.40 9 361 1.4E-135 T 10-10-2018 VF_A0934 d0073916b2de2e4e378532310a31c86d 129 ProDom PD075772 YGBA ECS3588 CYTOPLASMIC UVRA STM2860 AMIDOPHOSPHORIBOSYLTRANSFERASE VVA0912 SO0324 VPA0976 CPE0229 10 102 9.0E-51 T 10-10-2018 IPR020483 Uncharacterised protein family YgbA VF_A0934 d0073916b2de2e4e378532310a31c86d 129 Pfam PF11756 Nitrous oxide-stimulated promoter 10 111 1.3E-46 T 10-10-2018 IPR020483 Uncharacterised protein family YgbA VF_A0504 e79459d1f55629716864c784a7b656aa 140 Pfam PF11215 Protein of unknown function (DUF3010) 1 136 4.1E-58 T 10-10-2018 IPR021378 Protein of unknown function DUF3010 VF_A1051 0266b63e17689ba4b836b4bc9d6cc834 281 PRINTS PR01438 Universal stress protein signature 162 180 1.7E-8 T 10-10-2018 IPR006015 Universal stress protein A VF_A1051 0266b63e17689ba4b836b4bc9d6cc834 281 PRINTS PR01438 Universal stress protein signature 241 253 1.7E-8 T 10-10-2018 IPR006015 Universal stress protein A VF_A1051 0266b63e17689ba4b836b4bc9d6cc834 281 PRINTS PR01438 Universal stress protein signature 259 281 1.7E-8 T 10-10-2018 IPR006015 Universal stress protein A VF_A1051 0266b63e17689ba4b836b4bc9d6cc834 281 SUPERFAMILY SSF52402 165 281 2.18E-23 T 10-10-2018 VF_A1051 0266b63e17689ba4b836b4bc9d6cc834 281 Gene3D G3DSA:3.40.50.12370 3 281 2.2E-55 T 10-10-2018 VF_A1051 0266b63e17689ba4b836b4bc9d6cc834 281 Pfam PF00582 Universal stress protein family 166 281 1.1E-13 T 10-10-2018 IPR006016 UspA VF_A1051 0266b63e17689ba4b836b4bc9d6cc834 281 Pfam PF00582 Universal stress protein family 1 155 6.6E-8 T 10-10-2018 IPR006016 UspA VF_A1051 0266b63e17689ba4b836b4bc9d6cc834 281 SUPERFAMILY SSF52402 1 155 6.03E-17 T 10-10-2018 VF_A0687 a349229c473eba1d110930e49abae6b1 311 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 6 310 46.17 T 10-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 VF_A0687 a349229c473eba1d110930e49abae6b1 311 PIRSF PIRSF026649 4 307 8.2E-81 T 10-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VF_A0687 a349229c473eba1d110930e49abae6b1 311 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 7 299 1.3E-77 T 10-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VF_A0687 a349229c473eba1d110930e49abae6b1 311 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 7 306 8.7E-129 T 10-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 VF_A0722 f2068dbaf2065cf1d39e7ef44c8a860c 513 Pfam PF03553 Na+/H+ antiporter family 161 471 4.1E-52 T 10-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 VF_0627 82d4a7dd5028e37fec4735df904a1fb7 210 SUPERFAMILY SSF48452 34 187 1.23E-21 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0627 82d4a7dd5028e37fec4735df904a1fb7 210 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 10 206 5.6E-63 T 10-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW VF_0627 82d4a7dd5028e37fec4735df904a1fb7 210 Pfam PF13181 Tetratricopeptide repeat 37 69 0.021 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0627 82d4a7dd5028e37fec4735df904a1fb7 210 Gene3D G3DSA:1.25.40.10 31 207 4.8E-33 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0627 82d4a7dd5028e37fec4735df904a1fb7 210 Pfam PF13424 Tetratricopeptide repeat 106 171 5.8E-9 T 10-10-2018 VF_0627 82d4a7dd5028e37fec4735df904a1fb7 210 SMART SM00028 71 104 3.4 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0627 82d4a7dd5028e37fec4735df904a1fb7 210 SMART SM00028 141 174 5.1 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0627 82d4a7dd5028e37fec4735df904a1fb7 210 SMART SM00028 105 138 40.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0627 82d4a7dd5028e37fec4735df904a1fb7 210 SMART SM00028 37 70 0.41 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0434 6f51511b209573f5ce8a59859a1b5c8b 205 SUPERFAMILY SSF46565 126 204 2.62E-13 T 10-10-2018 IPR036869 Chaperone J-domain superfamily VF_A0434 6f51511b209573f5ce8a59859a1b5c8b 205 Pfam PF12339 DNA-J related protein 16 139 4.1E-39 T 10-10-2018 IPR021059 DnaJ-related protein, N-terminal VF_A0434 6f51511b209573f5ce8a59859a1b5c8b 205 Gene3D G3DSA:1.10.287.110 142 205 2.2E-11 T 10-10-2018 IPR036869 Chaperone J-domain superfamily VF_A0434 6f51511b209573f5ce8a59859a1b5c8b 205 SMART SM00271 154 205 1.8E-5 T 10-10-2018 IPR001623 DnaJ domain VF_A0434 6f51511b209573f5ce8a59859a1b5c8b 205 Pfam PF00226 DnaJ domain 159 204 2.5E-9 T 10-10-2018 IPR001623 DnaJ domain VF_A0288 af58d0b89b1415e7a2fbae0afb7623b7 126 SUPERFAMILY SSF101756 35 126 4.45E-21 T 10-10-2018 IPR036700 Bacterial OB-fold superfamily VF_A0288 af58d0b89b1415e7a2fbae0afb7623b7 126 Gene3D G3DSA:2.40.50.200 22 126 4.7E-17 T 10-10-2018 IPR036700 Bacterial OB-fold superfamily VF_A0288 af58d0b89b1415e7a2fbae0afb7623b7 126 Pfam PF04076 Bacterial OB fold (BOF) protein 54 124 1.2E-11 T 10-10-2018 IPR005220 Bacterial OB-fold VF_0388 bf7355570c14e6797906009a1d9aabf5 241 Gene3D G3DSA:3.40.50.300 2 241 6.3E-71 T 10-10-2018 VF_0388 bf7355570c14e6797906009a1d9aabf5 241 SUPERFAMILY SSF52540 3 236 2.72E-66 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0388 bf7355570c14e6797906009a1d9aabf5 241 SMART SM00382 28 202 3.3E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0388 bf7355570c14e6797906009a1d9aabf5 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 4 241 7.0E-122 T 10-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 VF_0388 bf7355570c14e6797906009a1d9aabf5 241 Pfam PF00005 ABC transporter 20 166 6.8E-34 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0388 bf7355570c14e6797906009a1d9aabf5 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VF_0388 bf7355570c14e6797906009a1d9aabf5 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 215 236 1.1E-6 T 10-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal VF_0116 bbee85bb75ac1f4a39cfac15b9594e69 463 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 365 385 - T 10-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 VF_0116 bbee85bb75ac1f4a39cfac15b9594e69 463 Pfam PF00860 Permease family 26 417 3.4E-94 T 10-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 VF_0116 bbee85bb75ac1f4a39cfac15b9594e69 463 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 20 447 7.5E-124 T 10-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 VF_0116 bbee85bb75ac1f4a39cfac15b9594e69 463 TIGRFAM TIGR03173 pbuX: xanthine permease 30 449 6.6E-129 T 10-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 VF_A0828 b8769d0205a53c72fb49652d1bd54dd9 120 Pfam PF13417 Glutathione S-transferase, N-terminal domain 43 120 8.6E-12 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VF_A0828 b8769d0205a53c72fb49652d1bd54dd9 120 SUPERFAMILY SSF52833 41 120 2.67E-18 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_A0828 b8769d0205a53c72fb49652d1bd54dd9 120 ProSitePatterns PS00195 Glutaredoxin active site. 43 59 - T 10-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 VF_A0828 b8769d0205a53c72fb49652d1bd54dd9 120 Gene3D G3DSA:3.40.30.10 23 119 2.0E-13 T 10-10-2018 VF_A0038 55ff433f1b391922330f69fdd7a66821 279 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.3E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0038 55ff433f1b391922330f69fdd7a66821 279 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.3E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0038 55ff433f1b391922330f69fdd7a66821 279 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.3E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0038 55ff433f1b391922330f69fdd7a66821 279 SUPERFAMILY SSF46785 1 75 1.2E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0038 55ff433f1b391922330f69fdd7a66821 279 Gene3D G3DSA:3.40.190.10 148 245 2.0E-23 T 10-10-2018 VF_A0038 55ff433f1b391922330f69fdd7a66821 279 Gene3D G3DSA:1.10.10.10 2 68 1.3E-16 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0038 55ff433f1b391922330f69fdd7a66821 279 SUPERFAMILY SSF53850 96 272 2.17E-23 T 10-10-2018 VF_A0038 55ff433f1b391922330f69fdd7a66821 279 Pfam PF03466 LysR substrate binding domain 113 273 2.6E-9 T 10-10-2018 IPR005119 LysR, substrate-binding VF_A0038 55ff433f1b391922330f69fdd7a66821 279 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 5.2E-16 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A0038 55ff433f1b391922330f69fdd7a66821 279 Gene3D G3DSA:3.40.190.10 110 270 2.0E-23 T 10-10-2018 VF_0075 1dadc7ba0bdb27838dff47ebd0197d4e 215 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 15 198 27.313 T 10-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 VF_0075 1dadc7ba0bdb27838dff47ebd0197d4e 215 SUPERFAMILY SSF52540 15 199 2.03E-34 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0075 1dadc7ba0bdb27838dff47ebd0197d4e 215 Gene3D G3DSA:3.40.50.300 3 205 1.2E-57 T 10-10-2018 VF_0075 1dadc7ba0bdb27838dff47ebd0197d4e 215 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 11 194 4.1E-73 T 10-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 VF_0075 1dadc7ba0bdb27838dff47ebd0197d4e 215 Pfam PF01926 50S ribosome-binding GTPase 29 147 5.6E-21 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 VF_2536 49e417fcb52e941d41b9b4aee2bc6147 185 SUPERFAMILY SSF55821 3 181 3.97E-53 T 10-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VF_2536 49e417fcb52e941d41b9b4aee2bc6147 185 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 1 183 39.515 T 10-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 VF_2536 49e417fcb52e941d41b9b4aee2bc6147 185 Pfam PF01300 Telomere recombination 10 185 5.6E-42 T 10-10-2018 IPR006070 YrdC-like domain GO:0003725 VF_2536 49e417fcb52e941d41b9b4aee2bc6147 185 Gene3D G3DSA:3.90.870.10 1 183 5.6E-58 T 10-10-2018 VF_1683 b1d7879975ef9c42a167f0cd4188114e 207 SMART SM01144 1 197 4.6E-63 T 10-10-2018 IPR005636 DTW VF_1683 b1d7879975ef9c42a167f0cd4188114e 207 Pfam PF03942 DTW domain 4 191 8.7E-46 T 10-10-2018 IPR005636 DTW VF_A0719 85a807bcb14884d779638ced7b62a9bb 1613 SUPERFAMILY SSF103088 643 767 9.42E-17 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_A0719 85a807bcb14884d779638ced7b62a9bb 1613 Pfam PF00691 OmpA family 644 748 4.4E-18 T 10-10-2018 IPR006665 OmpA-like domain VF_A0719 85a807bcb14884d779638ced7b62a9bb 1613 Gene3D G3DSA:3.30.1330.60 613 770 3.5E-16 T 10-10-2018 IPR036737 OmpA-like domain superfamily VF_0980 03efa9992b677480b6830714d0fa5671 386 SUPERFAMILY SSF103473 13 374 1.57E-34 T 10-10-2018 IPR036259 MFS transporter superfamily VF_0980 03efa9992b677480b6830714d0fa5671 386 Pfam PF07690 Major Facilitator Superfamily 18 343 1.7E-23 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_0980 03efa9992b677480b6830714d0fa5671 386 Gene3D G3DSA:1.20.1250.20 204 381 2.0E-13 T 10-10-2018 VF_0980 03efa9992b677480b6830714d0fa5671 386 Gene3D G3DSA:1.20.1250.20 7 193 4.0E-13 T 10-10-2018 VF_1322 211b1bf3d37666b576b07e6d578ea8f1 406 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 194 403 9.1E-72 T 10-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 VF_1322 211b1bf3d37666b576b07e6d578ea8f1 406 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 4 403 3.7E-142 T 10-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 VF_1322 211b1bf3d37666b576b07e6d578ea8f1 406 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 1.6E-24 T 10-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 VF_1322 211b1bf3d37666b576b07e6d578ea8f1 406 Pfam PF07670 Nucleoside recognition 92 187 1.6E-7 T 10-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VF_0786 561059ac2c28ddd97fb984062fc7f3f4 360 Gene3D G3DSA:1.10.3720.10 132 322 6.2E-36 T 10-10-2018 IPR035906 MetI-like superfamily VF_0786 561059ac2c28ddd97fb984062fc7f3f4 360 SUPERFAMILY SSF161098 136 318 4.84E-41 T 10-10-2018 IPR035906 MetI-like superfamily VF_0786 561059ac2c28ddd97fb984062fc7f3f4 360 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 157 321 1.7E-24 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_A0052 fd83ee0778521b7e5b385f55d0a45e1e 239 Gene3D G3DSA:3.40.50.720 1 239 4.9E-75 T 10-10-2018 VF_A0052 fd83ee0778521b7e5b385f55d0a45e1e 239 Pfam PF00106 short chain dehydrogenase 3 189 4.3E-52 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0052 fd83ee0778521b7e5b385f55d0a45e1e 239 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 132 160 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VF_A0052 fd83ee0778521b7e5b385f55d0a45e1e 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 7.8E-32 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0052 fd83ee0778521b7e5b385f55d0a45e1e 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 7.8E-32 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0052 fd83ee0778521b7e5b385f55d0a45e1e 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 7.8E-32 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0052 fd83ee0778521b7e5b385f55d0a45e1e 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 201 221 7.8E-32 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0052 fd83ee0778521b7e5b385f55d0a45e1e 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 7.8E-32 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0052 fd83ee0778521b7e5b385f55d0a45e1e 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 7.8E-32 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0052 fd83ee0778521b7e5b385f55d0a45e1e 239 SUPERFAMILY SSF51735 3 223 1.42E-61 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0052 fd83ee0778521b7e5b385f55d0a45e1e 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 3.7E-9 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0052 fd83ee0778521b7e5b385f55d0a45e1e 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 3.7E-9 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_A0052 fd83ee0778521b7e5b385f55d0a45e1e 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 3.7E-9 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_1702 07051f390b7b3a7a15880e439c0f5ead 325 Gene3D G3DSA:1.10.8.350 39 203 1.9E-93 T 10-10-2018 VF_1702 07051f390b7b3a7a15880e439c0f5ead 325 Gene3D G3DSA:1.10.530.10 70 321 1.9E-93 T 10-10-2018 VF_1702 07051f390b7b3a7a15880e439c0f5ead 325 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 27 325 3.7E-111 T 10-10-2018 IPR011970 Lytic murein transglycosylase VF_1702 07051f390b7b3a7a15880e439c0f5ead 325 SUPERFAMILY SSF53955 14 325 2.95E-99 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily VF_1702 07051f390b7b3a7a15880e439c0f5ead 325 Pfam PF13406 Transglycosylase SLT domain 28 322 8.4E-108 T 10-10-2018 IPR031304 Transglycosylase SLT domain 2 VF_1018 c5c890873fed69f0dd6c3f36034977a6 257 SUPERFAMILY SSF51366 1 256 1.49E-71 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VF_1018 c5c890873fed69f0dd6c3f36034977a6 257 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 256 44.256 T 10-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 VF_1018 c5c890873fed69f0dd6c3f36034977a6 257 Gene3D G3DSA:3.20.20.70 1 257 3.8E-93 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1018 c5c890873fed69f0dd6c3f36034977a6 257 Pfam PF00977 Histidine biosynthesis protein 5 239 7.5E-78 T 10-10-2018 IPR006062 Histidine biosynthesis GO:0000105 VF_1018 c5c890873fed69f0dd6c3f36034977a6 257 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 256 1.6E-113 T 10-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 VF_2502 f6b1868dde5e53dce4353cd33ecbea3f 115 Gene3D G3DSA:1.10.1790.10 3 108 7.9E-34 T 10-10-2018 VF_2502 f6b1868dde5e53dce4353cd33ecbea3f 115 SUPERFAMILY SSF63520 27 107 9.29E-7 T 10-10-2018 IPR036634 PRD domain superfamily GO:0006355 VF_2502 f6b1868dde5e53dce4353cd33ecbea3f 115 TIGRFAM TIGR03582 EF_0829: PRD domain protein, EF_0829/AHA_3910 family 3 107 5.3E-46 T 10-10-2018 IPR020044 PRD domain protein, EF0829/AHA3910 VF_1382 cd3cff8bce26e954c9e761be39153d21 176 Pfam PF13302 Acetyltransferase (GNAT) domain 6 144 9.9E-16 T 10-10-2018 IPR000182 GNAT domain VF_1382 cd3cff8bce26e954c9e761be39153d21 176 Gene3D G3DSA:3.40.630.30 1 171 6.4E-31 T 10-10-2018 VF_1382 cd3cff8bce26e954c9e761be39153d21 176 SUPERFAMILY SSF55729 3 166 4.33E-32 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_0327 8a842c3565d1afae7691da1320bf8f3b 228 Pfam PF00005 ABC transporter 24 174 3.8E-30 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VF_0327 8a842c3565d1afae7691da1320bf8f3b 228 SUPERFAMILY SSF52540 3 218 3.26E-52 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0327 8a842c3565d1afae7691da1320bf8f3b 228 Gene3D G3DSA:3.40.50.300 1 225 2.4E-56 T 10-10-2018 VF_0327 8a842c3565d1afae7691da1320bf8f3b 228 SMART SM00382 30 222 1.0E-14 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_0408 c826ba843accdab3ff8e9691f1ab9634 406 Gene3D G3DSA:1.10.3930.10 68 148 5.8E-147 T 10-10-2018 VF_0408 c826ba843accdab3ff8e9691f1ab9634 406 SUPERFAMILY SSF55909 4 406 2.5E-126 T 10-10-2018 VF_0408 c826ba843accdab3ff8e9691f1ab9634 406 Pfam PF02274 Amidinotransferase 18 403 5.4E-108 T 10-10-2018 VF_0408 c826ba843accdab3ff8e9691f1ab9634 406 TIGRFAM TIGR01078 arcA: arginine deiminase 5 406 1.2E-155 T 10-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VF_0408 c826ba843accdab3ff8e9691f1ab9634 406 PRINTS PR01466 Bacterial arginine deiminase signature 362 376 3.6E-44 T 10-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VF_0408 c826ba843accdab3ff8e9691f1ab9634 406 PRINTS PR01466 Bacterial arginine deiminase signature 2 22 3.6E-44 T 10-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VF_0408 c826ba843accdab3ff8e9691f1ab9634 406 PRINTS PR01466 Bacterial arginine deiminase signature 342 359 3.6E-44 T 10-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VF_0408 c826ba843accdab3ff8e9691f1ab9634 406 PRINTS PR01466 Bacterial arginine deiminase signature 149 167 3.6E-44 T 10-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VF_0408 c826ba843accdab3ff8e9691f1ab9634 406 PRINTS PR01466 Bacterial arginine deiminase signature 385 403 3.6E-44 T 10-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VF_0408 c826ba843accdab3ff8e9691f1ab9634 406 PRINTS PR01466 Bacterial arginine deiminase signature 177 192 3.6E-44 T 10-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VF_0408 c826ba843accdab3ff8e9691f1ab9634 406 Gene3D G3DSA:3.75.10.10 6 403 5.8E-147 T 10-10-2018 VF_0408 c826ba843accdab3ff8e9691f1ab9634 406 Hamap MF_00242 Arginine deiminase [arcA]. 1 406 42.564 T 10-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VF_0408 c826ba843accdab3ff8e9691f1ab9634 406 PIRSF PIRSF006356 1 406 6.2E-147 T 10-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VF_0519 a9fe9f45b89e42410eea26b9869f4f5f 246 SUPERFAMILY SSF48452 40 182 2.96E-12 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0519 a9fe9f45b89e42410eea26b9869f4f5f 246 Gene3D G3DSA:1.25.40.10 13 238 1.3E-14 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0519 a9fe9f45b89e42410eea26b9869f4f5f 246 SMART SM00028 91 124 0.077 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0519 a9fe9f45b89e42410eea26b9869f4f5f 246 SMART SM00028 125 158 24.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0961 ea9ca8d772ea4f2427cdbb4b9a573b0f 508 Gene3D G3DSA:3.20.70.20 77 239 4.3E-6 T 10-10-2018 VF_A0961 ea9ca8d772ea4f2427cdbb4b9a573b0f 508 Pfam PF11230 Protein of unknown function (DUF3029) 15 496 4.2E-232 T 10-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted VF_A0961 ea9ca8d772ea4f2427cdbb4b9a573b0f 508 TIGRFAM TIGR04040 glycyl_YjjI: glycine radical enzyme, YjjI family 5 496 8.4E-234 T 10-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted VF_A0961 ea9ca8d772ea4f2427cdbb4b9a573b0f 508 SUPERFAMILY SSF51998 12 462 1.43E-101 T 10-10-2018 VF_A0961 ea9ca8d772ea4f2427cdbb4b9a573b0f 508 PIRSF PIRSF028991 1 508 2.5E-292 T 10-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted VF_1552 be7b969b2c0130af46d34a28bbc99ef2 228 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 132 143 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VF_1552 be7b969b2c0130af46d34a28bbc99ef2 228 Gene3D G3DSA:3.30.70.20 34 79 3.7E-6 T 10-10-2018 VF_1552 be7b969b2c0130af46d34a28bbc99ef2 228 TIGRFAM TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein 2 228 7.3E-133 T 10-10-2018 IPR017567 Cytochrome c nitrite reductase, Fe-S protein VF_1552 be7b969b2c0130af46d34a28bbc99ef2 228 Pfam PF13247 4Fe-4S dicluster domain 91 188 1.1E-25 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VF_1552 be7b969b2c0130af46d34a28bbc99ef2 228 SUPERFAMILY SSF54862 42 224 6.38E-64 T 10-10-2018 VF_1552 be7b969b2c0130af46d34a28bbc99ef2 228 Gene3D G3DSA:3.30.70.20 80 227 2.3E-53 T 10-10-2018 VF_B0029 e82e8ff50b94389e97d960cecee89a98 517 Pfam PF00437 Type II/IV secretion system protein 108 382 1.5E-24 T 10-10-2018 IPR001482 Type II/IV secretion system protein VF_B0029 e82e8ff50b94389e97d960cecee89a98 517 Gene3D G3DSA:3.30.450.90 73 212 8.4E-7 T 10-10-2018 VF_B0029 e82e8ff50b94389e97d960cecee89a98 517 SUPERFAMILY SSF52540 81 497 9.33E-38 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_B0029 e82e8ff50b94389e97d960cecee89a98 517 Gene3D G3DSA:3.40.50.300 213 500 2.2E-58 T 10-10-2018 VF_A0399 56b2fff121c2bce2d2dee5405860ede1 489 SUPERFAMILY SSF48452 32 247 3.2E-11 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0399 56b2fff121c2bce2d2dee5405860ede1 489 Gene3D G3DSA:1.25.40.10 18 165 4.1E-7 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0399 56b2fff121c2bce2d2dee5405860ede1 489 Gene3D G3DSA:1.25.40.10 166 320 1.0E-7 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A1155 362b9e2440268e26c88ade2363a7fa33 137 SUPERFAMILY SSF75620 7 124 3.81E-13 T 10-10-2018 VF_A1155 362b9e2440268e26c88ade2363a7fa33 137 Gene3D G3DSA:3.30.160.20 1 137 8.6E-39 T 10-10-2018 VF_A1155 362b9e2440268e26c88ade2363a7fa33 137 Pfam PF00472 RF-1 domain 7 132 1.2E-24 T 10-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 VF_A1155 362b9e2440268e26c88ade2363a7fa33 137 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 10-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 VF_2110 f7a38acbcc571203c7af668e1fcdd6aa 477 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 87 102 - T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2110 f7a38acbcc571203c7af668e1fcdd6aa 477 Pfam PF01235 Sodium:alanine symporter family 48 452 3.4E-161 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2110 f7a38acbcc571203c7af668e1fcdd6aa 477 PRINTS PR00175 Sodium/alanine symporter signature 206 225 2.2E-56 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2110 f7a38acbcc571203c7af668e1fcdd6aa 477 PRINTS PR00175 Sodium/alanine symporter signature 410 430 2.2E-56 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2110 f7a38acbcc571203c7af668e1fcdd6aa 477 PRINTS PR00175 Sodium/alanine symporter signature 178 196 2.2E-56 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2110 f7a38acbcc571203c7af668e1fcdd6aa 477 PRINTS PR00175 Sodium/alanine symporter signature 303 321 2.2E-56 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2110 f7a38acbcc571203c7af668e1fcdd6aa 477 PRINTS PR00175 Sodium/alanine symporter signature 349 371 2.2E-56 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2110 f7a38acbcc571203c7af668e1fcdd6aa 477 PRINTS PR00175 Sodium/alanine symporter signature 87 109 2.2E-56 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2110 f7a38acbcc571203c7af668e1fcdd6aa 477 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 441 9.5E-159 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_A0224 b94f58a30bb975d598a759f677320d03 307 Pfam PF00482 Type II secretion system (T2SS), protein F 139 263 1.3E-18 T 10-10-2018 IPR018076 Type II secretion system F domain VF_0662 c5af159a868f399c7a48542466e7b7a2 72 ProDom PD054643 UPF0253 YAEP CYTOPLASMIC VP2335 YPO1064.1/Y3113/YP2785 VC0872 VV2574 PBPRA2947 VV11836 11 69 4.0E-20 T 10-10-2018 IPR009624 Uncharacterised protein family UPF0253 VF_0662 c5af159a868f399c7a48542466e7b7a2 72 Hamap MF_01064 UPF0253 protein YaeP [yaeP]. 5 72 27.706 T 10-10-2018 IPR009624 Uncharacterised protein family UPF0253 VF_0662 c5af159a868f399c7a48542466e7b7a2 72 Pfam PF06786 Uncharacterised protein family (UPF0253) 5 71 1.3E-34 T 10-10-2018 IPR009624 Uncharacterised protein family UPF0253 VF_0415 ca882506f5359028cb141638f260c3f4 358 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 356 1.6E-130 T 10-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 VF_0415 ca882506f5359028cb141638f260c3f4 358 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 355 2.9E-71 T 10-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 VF_0065 4496590e9d601d892938141a9eca53b5 253 Gene3D G3DSA:3.40.50.10090 32 164 2.5E-62 T 10-10-2018 VF_0065 4496590e9d601d892938141a9eca53b5 253 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 227 1.5E-30 T 10-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_0065 4496590e9d601d892938141a9eca53b5 253 Gene3D G3DSA:3.40.50.10090 4 241 2.5E-62 T 10-10-2018 VF_0065 4496590e9d601d892938141a9eca53b5 253 SUPERFAMILY SSF69618 1 245 1.7E-50 T 10-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VF_1362 fbb6ee230293a6ca2e265c6f833c01ce 200 SUPERFAMILY SSF89155 3 194 1.44E-56 T 10-10-2018 IPR036411 TorD-like superfamily VF_1362 fbb6ee230293a6ca2e265c6f833c01ce 200 Pfam PF02613 Nitrate reductase delta subunit 39 157 9.4E-31 T 10-10-2018 IPR020945 DMSO/Nitrate reductase chaperone VF_1362 fbb6ee230293a6ca2e265c6f833c01ce 200 Gene3D G3DSA:1.10.3480.10 1 197 2.3E-42 T 10-10-2018 VF_0160 462bf5a4f56eb125c823191e537de71d 224 SUPERFAMILY SSF159270 20 222 6.15E-58 T 10-10-2018 IPR023373 YmcC-like superfamily VF_0160 462bf5a4f56eb125c823191e537de71d 224 Pfam PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF 14 219 2.4E-60 T 10-10-2018 IPR021308 Group 4 capsule polysaccharide formation lipoprotein GfcB VF_0160 462bf5a4f56eb125c823191e537de71d 224 Gene3D G3DSA:2.40.360.10 18 223 4.7E-59 T 10-10-2018 IPR023373 YmcC-like superfamily VF_0549 4d37538ad5d22c1c4e71e9f7b25a4a1c 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 1.3E-26 T 10-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0549 4d37538ad5d22c1c4e71e9f7b25a4a1c 82 SUPERFAMILY SSF54565 1 76 5.76E-27 T 10-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0549 4d37538ad5d22c1c4e71e9f7b25a4a1c 82 Pfam PF00886 Ribosomal protein S16 8 68 2.4E-21 T 10-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0549 4d37538ad5d22c1c4e71e9f7b25a4a1c 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 22.632 T 10-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0549 4d37538ad5d22c1c4e71e9f7b25a4a1c 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 10-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VF_0549 4d37538ad5d22c1c4e71e9f7b25a4a1c 82 Gene3D G3DSA:3.30.1320.10 1 82 1.9E-29 T 10-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VF_0503 05c6f86b70d84cd7b47a314d5ce63eff 56 Pfam PF07235 Protein of unknown function (DUF1427) 5 43 7.3E-7 T 10-10-2018 IPR009872 Protein of unknown function DUF1427 VF_0503 05c6f86b70d84cd7b47a314d5ce63eff 56 TIGRFAM TIGR03510 XapX: XapX domain 3 50 1.0E-19 T 10-10-2018 IPR020017 XapX domain VF_A0919 d32d61f581f49c318b8919508781da1d 376 Gene3D G3DSA:3.40.50.12780 22 327 1.3E-16 T 10-10-2018 VF_A0919 d32d61f581f49c318b8919508781da1d 376 PIRSF PIRSF016580 7 375 1.4E-163 T 10-10-2018 IPR016671 Acyl-protein synthetase, LuxE, bacterial GO:0008218|GO:0047474 MetaCyc: PWY-7723 VF_A0919 d32d61f581f49c318b8919508781da1d 376 Pfam PF04443 Acyl-protein synthetase, LuxE 9 369 1.4E-131 T 10-10-2018 IPR007534 Acyl-protein synthetase, LuxE GO:0008218|GO:0047474 MetaCyc: PWY-7723 VF_0022 2b2a597d894783206d795f6b2d3406c6 148 Pfam PF05360 yiaA/B two helix domain 77 129 1.4E-17 T 10-10-2018 IPR008024 YiaAB two helix VF_0022 2b2a597d894783206d795f6b2d3406c6 148 Pfam PF05360 yiaA/B two helix domain 14 66 5.3E-20 T 10-10-2018 IPR008024 YiaAB two helix VF_1586 6c69e16f1b77a70a432b344276d098c8 246 Gene3D G3DSA:1.10.3720.10 3 243 5.9E-51 T 10-10-2018 IPR035906 MetI-like superfamily VF_1586 6c69e16f1b77a70a432b344276d098c8 246 SUPERFAMILY SSF161098 9 227 4.97E-40 T 10-10-2018 IPR035906 MetI-like superfamily VF_1586 6c69e16f1b77a70a432b344276d098c8 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 74 1.3E-15 T 10-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VF_1586 6c69e16f1b77a70a432b344276d098c8 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 241 1.9E-21 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_1546 0147f161e05ae303840dfd7cee7a5f68 433 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 6 432 3.1E-144 T 10-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VF_1546 0147f161e05ae303840dfd7cee7a5f68 433 PIRSF PIRSF004539 1 433 1.3E-154 T 10-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VF_1546 0147f161e05ae303840dfd7cee7a5f68 433 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 6 364 2.4E-129 T 10-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VF_1559 6d4cfe24fdb5bad5743fb04ecbab4b4b 110 Pfam PF11872 Protein of unknown function (DUF3392) 4 107 3.2E-38 T 10-10-2018 IPR021813 Protein of unknown function DUF3392 VF_0871 70fdc3e2e4087aa8c8e74a3d413c90bc 180 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 8.0E-11 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_0871 70fdc3e2e4087aa8c8e74a3d413c90bc 180 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 8.0E-11 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_0871 70fdc3e2e4087aa8c8e74a3d413c90bc 180 Gene3D G3DSA:1.10.357.10 1 180 1.3E-27 T 10-10-2018 VF_0871 70fdc3e2e4087aa8c8e74a3d413c90bc 180 SUPERFAMILY SSF46689 3 63 7.28E-17 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VF_0871 70fdc3e2e4087aa8c8e74a3d413c90bc 180 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 3.1E-17 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VF_A0938 7e519a168fadf6620096fe63ee8ec42a 204 Pfam PF01810 LysE type translocator 15 202 1.8E-35 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_A0938 7e519a168fadf6620096fe63ee8ec42a 204 PIRSF PIRSF006324 1 204 1.6E-40 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_0522 9f15b1c869ea83fdfba6f81da25af0d5 465 SUPERFAMILY SSF53300 150 455 5.23E-12 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_0522 9f15b1c869ea83fdfba6f81da25af0d5 465 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 11 54 7.9E-6 T 10-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal VF_A0215 c35329cf551e6b88b9294601ba84fd2f 296 SUPERFAMILY SSF47413 3 72 1.6E-5 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_A0215 c35329cf551e6b88b9294601ba84fd2f 296 Gene3D G3DSA:1.10.260.40 2 90 4.4E-8 T 10-10-2018 VF_A0718 1770d086f4430534d68285a7ec4fccfa 408 SUPERFAMILY SSF69304 116 335 1.11E-12 T 10-10-2018 VF_A0351 28159164b817160e706dc19bf9bad4aa 543 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 44 463 4.0E-127 T 10-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VF_A0351 28159164b817160e706dc19bf9bad4aa 543 Gene3D G3DSA:1.20.1730.10 33 543 8.1E-209 T 10-10-2018 IPR038377 Sodium/glucose symporter superfamily VF_A0351 28159164b817160e706dc19bf9bad4aa 543 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 159 184 - T 10-10-2018 IPR018212 Sodium/solute symporter, conserved site VF_A0351 28159164b817160e706dc19bf9bad4aa 543 Pfam PF00474 Sodium:solute symporter family 44 462 4.5E-75 T 10-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VF_A0164 75e54760b45fc17d4eb9dfb2ad140841 432 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 5 332 4.0E-104 T 10-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase VF_A0164 75e54760b45fc17d4eb9dfb2ad140841 432 Gene3D G3DSA:3.50.50.60 1 418 5.9E-113 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_A0164 75e54760b45fc17d4eb9dfb2ad140841 432 SUPERFAMILY SSF51905 3 252 3.63E-19 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VF_0511 e3fb475e234e508ac36e5de1a5336f09 145 Pfam PF01478 Type IV leader peptidase family 11 105 7.4E-8 T 10-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 VF_1844 2d1569cccbdf5ecf0e08a930df40481c 129 SUPERFAMILY SSF101801 47 127 1.83E-24 T 10-10-2018 IPR036429 SpoA-like superfamily VF_1844 2d1569cccbdf5ecf0e08a930df40481c 129 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 49 119 9.4E-24 T 10-10-2018 IPR001543 Surface presentation of antigen (SpoA) VF_1844 2d1569cccbdf5ecf0e08a930df40481c 129 Gene3D G3DSA:2.30.330.10 36 129 1.6E-33 T 10-10-2018 IPR036429 SpoA-like superfamily VF_1844 2d1569cccbdf5ecf0e08a930df40481c 129 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 47 121 9.5E-33 T 10-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 VF_1844 2d1569cccbdf5ecf0e08a930df40481c 129 PRINTS PR00956 Flagellar motor switch protein FliN signature 95 110 3.6E-27 T 10-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VF_1844 2d1569cccbdf5ecf0e08a930df40481c 129 PRINTS PR00956 Flagellar motor switch protein FliN signature 49 65 3.6E-27 T 10-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VF_1844 2d1569cccbdf5ecf0e08a930df40481c 129 PRINTS PR00956 Flagellar motor switch protein FliN signature 82 95 3.6E-27 T 10-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VF_1844 2d1569cccbdf5ecf0e08a930df40481c 129 PRINTS PR00956 Flagellar motor switch protein FliN signature 66 82 3.6E-27 T 10-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VF_1077 b31059a6371aa4669e03915d5630bdec 252 Gene3D G3DSA:3.90.1580.10 2 252 6.1E-57 T 10-10-2018 VF_1077 b31059a6371aa4669e03915d5630bdec 252 SUPERFAMILY SSF56436 4 249 1.13E-61 T 10-10-2018 IPR016187 C-type lectin fold VF_1077 b31059a6371aa4669e03915d5630bdec 252 Pfam PF03781 Sulfatase-modifying factor enzyme 1 6 248 3.4E-46 T 10-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 VF_A0464 c7bc284167452075376f365c0f56bb81 414 Pfam PF02687 FtsX-like permease family 302 407 1.0E-10 T 10-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VF_A0464 c7bc284167452075376f365c0f56bb81 414 TIGRFAM TIGR02213 lolE_release: lipoprotein releasing system, transmembrane protein LolE 5 414 1.4E-203 T 10-10-2018 IPR011926 Lipoprotein-releasing system transmembrane protein LolC/E, gammaproteobacteria type GO:0016021|GO:0042953|GO:0042954|GO:0044874 VF_A0464 c7bc284167452075376f365c0f56bb81 414 Pfam PF12704 MacB-like periplasmic core domain 30 239 2.8E-13 T 10-10-2018 IPR025857 MacB-like periplasmic core domain VF_A0464 c7bc284167452075376f365c0f56bb81 414 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 413 6.7E-153 T 10-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 VF_1004 80f365bb0a5283b442daf54d12cdd5b0 166 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 3 160 1.5E-56 T 10-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 VF_1004 80f365bb0a5283b442daf54d12cdd5b0 166 PIRSF PIRSF028301 1 166 2.1E-56 T 10-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 VF_1004 80f365bb0a5283b442daf54d12cdd5b0 166 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 6 159 9.8E-54 T 10-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 Pfam PF00989 PAS fold 11 104 1.0E-7 T 10-10-2018 IPR013767 PAS fold GO:0006355 VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 SUPERFAMILY SSF47384 128 195 4.51E-13 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 10 123 5.1E-6 T 10-10-2018 IPR000014 PAS domain VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 Gene3D G3DSA:3.30.565.10 194 352 8.4E-40 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 PRINTS PR00344 Bacterial sensor protein C-terminal signature 337 350 2.0E-11 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 PRINTS PR00344 Bacterial sensor protein C-terminal signature 285 299 2.0E-11 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 PRINTS PR00344 Bacterial sensor protein C-terminal signature 314 332 2.0E-11 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 Gene3D G3DSA:1.10.287.130 136 193 8.5E-14 T 10-10-2018 VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 Pfam PF00512 His Kinase A (phospho-acceptor) domain 136 195 2.9E-14 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 SMART SM00388 132 197 6.3E-14 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 SUPERFAMILY SSF55874 199 350 6.81E-35 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 237 351 4.0E-18 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 SUPERFAMILY SSF55785 19 124 3.84E-8 T 10-10-2018 IPR035965 PAS domain superfamily VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 SMART SM00387 236 352 6.3E-28 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 SMART SM00091 7 75 5.3E-6 T 10-10-2018 IPR000014 PAS domain VF_0096 3e1bdb489d60eb4bb67270ddb777e998 352 Gene3D G3DSA:3.30.450.20 5 115 1.4E-22 T 10-10-2018 VF_0228 e77828482013ee3155bc9cb981ee41ff 130 Pfam PF02635 DsrE/DsrF-like family 4 130 2.6E-26 T 10-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein VF_0228 e77828482013ee3155bc9cb981ee41ff 130 SUPERFAMILY SSF75169 6 130 1.3E-36 T 10-10-2018 IPR027396 DsrEFH-like VF_0228 e77828482013ee3155bc9cb981ee41ff 130 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 5 130 3.4E-53 T 10-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 VF_0228 e77828482013ee3155bc9cb981ee41ff 130 Gene3D G3DSA:3.40.1260.10 1 130 1.2E-51 T 10-10-2018 IPR027396 DsrEFH-like VF_0207 81bb91c5ec312c28cd57d8f52b902fa2 114 Gene3D G3DSA:3.30.429.10 1 114 1.6E-34 T 10-10-2018 IPR014347 Tautomerase/MIF superfamily VF_0207 81bb91c5ec312c28cd57d8f52b902fa2 114 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 91 2.9E-7 T 10-10-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 VF_0207 81bb91c5ec312c28cd57d8f52b902fa2 114 SUPERFAMILY SSF55331 2 113 8.51E-35 T 10-10-2018 IPR014347 Tautomerase/MIF superfamily VF_A0671 e964063661ddc640f6a52a8d9273ad00 165 Gene3D G3DSA:1.10.287.110 109 165 1.5E-10 T 10-10-2018 IPR036869 Chaperone J-domain superfamily VF_A0671 e964063661ddc640f6a52a8d9273ad00 165 SUPERFAMILY SSF46565 117 161 3.53E-11 T 10-10-2018 IPR036869 Chaperone J-domain superfamily VF_2194 9307cf7b2a5409a6ca225a251c4b23c2 155 Pfam PF05258 Protein of unknown function (DUF721) 19 85 8.8E-14 T 10-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 VF_B0007 94ed9e8c13f1e8cb80ddfbec8280fb43 165 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 114 119 - T 10-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site VF_B0007 94ed9e8c13f1e8cb80ddfbec8280fb43 165 SUPERFAMILY SSF102712 90 134 2.22E-5 T 10-10-2018 VF_B0007 94ed9e8c13f1e8cb80ddfbec8280fb43 165 Pfam PF04002 RadC-like JAB domain 45 163 1.1E-40 T 10-10-2018 IPR025657 RadC-like JAB domain VF_B0007 94ed9e8c13f1e8cb80ddfbec8280fb43 165 Gene3D G3DSA:3.40.140.10 40 165 2.7E-39 T 10-10-2018 VF_B0007 94ed9e8c13f1e8cb80ddfbec8280fb43 165 TIGRFAM TIGR00608 radc: DNA repair protein RadC 27 165 2.8E-44 T 10-10-2018 IPR001405 Uncharacterised protein family UPF0758 VF_A0745 0d8a0dad9649e417dc14a126f79a1c4c 226 Gene3D G3DSA:3.40.50.300 3 224 1.5E-66 T 10-10-2018 VF_A0745 0d8a0dad9649e417dc14a126f79a1c4c 226 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 211 30.1 T 10-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 VF_A0745 0d8a0dad9649e417dc14a126f79a1c4c 226 PIRSF PIRSF006755 1 225 1.2E-76 T 10-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 VF_A0745 0d8a0dad9649e417dc14a126f79a1c4c 226 SUPERFAMILY SSF52540 1 215 8.86E-61 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0745 0d8a0dad9649e417dc14a126f79a1c4c 226 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 176 1.7E-54 T 10-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 VF_A0745 0d8a0dad9649e417dc14a126f79a1c4c 226 Pfam PF13500 AAA domain 4 211 1.0E-38 T 10-10-2018 VF_2366 486af2ef55e5b5ff0c7129547e4ecaec 321 Gene3D G3DSA:3.40.50.1980 25 208 5.0E-56 T 10-10-2018 VF_2366 486af2ef55e5b5ff0c7129547e4ecaec 321 SUPERFAMILY SSF53807 24 319 1.91E-77 T 10-10-2018 VF_2366 486af2ef55e5b5ff0c7129547e4ecaec 321 Pfam PF01297 Zinc-uptake complex component A periplasmic 26 319 7.9E-59 T 10-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 VF_2366 486af2ef55e5b5ff0c7129547e4ecaec 321 Gene3D G3DSA:3.40.50.1980 209 321 3.2E-35 T 10-10-2018 VF_A0720 b0fbdb7d149f79f90508e927307a0b30 363 Gene3D G3DSA:2.130.10.10 72 236 2.0E-6 T 10-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VF_A0720 b0fbdb7d149f79f90508e927307a0b30 363 SUPERFAMILY SSF69304 115 335 1.57E-15 T 10-10-2018 VF_2617 e07dc3a6d21825c60f7589dd70491c83 67 SUPERFAMILY SSF48695 4 42 8.94E-7 T 10-10-2018 IPR036280 Multiheme cytochrome superfamily VF_2617 e07dc3a6d21825c60f7589dd70491c83 67 Pfam PF14255 Cysteine-rich CPXCG 9 59 6.1E-16 T 10-10-2018 IPR025990 Cysteine-rich CPXCG protein VF_0413 d7045f5fc0d7a722580b8c723c42ffb5 502 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 349 356 - T 10-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VF_0413 d7045f5fc0d7a722580b8c723c42ffb5 502 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 497 40.073 T 10-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 VF_0413 d7045f5fc0d7a722580b8c723c42ffb5 502 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 8.6E-33 T 10-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VF_0413 d7045f5fc0d7a722580b8c723c42ffb5 502 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 187 489 8.2E-121 T 10-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VF_0413 d7045f5fc0d7a722580b8c723c42ffb5 502 Gene3D G3DSA:3.40.630.10 181 497 2.9E-137 T 10-10-2018 VF_0413 d7045f5fc0d7a722580b8c723c42ffb5 502 PRINTS PR00481 Cytosol aminopeptidase signature 373 388 5.9E-55 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VF_0413 d7045f5fc0d7a722580b8c723c42ffb5 502 PRINTS PR00481 Cytosol aminopeptidase signature 345 365 5.9E-55 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VF_0413 d7045f5fc0d7a722580b8c723c42ffb5 502 PRINTS PR00481 Cytosol aminopeptidase signature 323 344 5.9E-55 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VF_0413 d7045f5fc0d7a722580b8c723c42ffb5 502 PRINTS PR00481 Cytosol aminopeptidase signature 264 281 5.9E-55 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VF_0413 d7045f5fc0d7a722580b8c723c42ffb5 502 PRINTS PR00481 Cytosol aminopeptidase signature 286 307 5.9E-55 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VF_0413 d7045f5fc0d7a722580b8c723c42ffb5 502 SUPERFAMILY SSF52949 1 184 1.53E-51 T 10-10-2018 VF_0413 d7045f5fc0d7a722580b8c723c42ffb5 502 SUPERFAMILY SSF53187 180 497 1.07E-121 T 10-10-2018 VF_0413 d7045f5fc0d7a722580b8c723c42ffb5 502 Gene3D G3DSA:3.40.220.10 1 159 9.9E-59 T 10-10-2018 VF_1297 8ec8977937043d3140ff364fefe0468a 394 Pfam PF10442 FIST C domain 229 374 9.6E-17 T 10-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 VF_1297 8ec8977937043d3140ff364fefe0468a 394 SMART SM01204 229 375 8.1E-30 T 10-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 VF_1297 8ec8977937043d3140ff364fefe0468a 394 SMART SM00897 30 228 5.0E-44 T 10-10-2018 IPR013702 FIST domain, N-terminal VF_1297 8ec8977937043d3140ff364fefe0468a 394 Pfam PF08495 FIST N domain 33 227 5.0E-27 T 10-10-2018 IPR013702 FIST domain, N-terminal VF_A0014 3e1e945f8795c8b1248c102d92096aa2 179 SUPERFAMILY SSF56925 26 179 6.28E-15 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VF_A0014 3e1e945f8795c8b1248c102d92096aa2 179 Gene3D G3DSA:2.40.160.20 25 179 1.4E-9 T 10-10-2018 VF_A0014 3e1e945f8795c8b1248c102d92096aa2 179 Pfam PF13505 Outer membrane protein beta-barrel domain 7 179 7.3E-25 T 10-10-2018 IPR027385 Outer membrane protein beta-barrel VF_0182 b16c724b4c016136ab83d18d3e3d75a9 257 SUPERFAMILY SSF53448 1 257 2.92E-68 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0182 b16c724b4c016136ab83d18d3e3d75a9 257 Gene3D G3DSA:3.90.550.10 1 257 2.4E-76 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0182 b16c724b4c016136ab83d18d3e3d75a9 257 Pfam PF00483 Nucleotidyl transferase 2 200 4.0E-18 T 10-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VF_0182 b16c724b4c016136ab83d18d3e3d75a9 257 TIGRFAM TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase 1 256 2.5E-146 T 10-10-2018 IPR013446 Glucose-1-phosphate cytidylyltransferase GO:0047343 KEGG: 00500+2.7.7.33|KEGG: 00520+2.7.7.33|MetaCyc: PWY-5833|MetaCyc: PWY-5940 VF_0148 aa7dde75dcafbda558ef0d3cdee0ab57 256 Gene3D G3DSA:3.40.50.720 1 256 8.5E-39 T 10-10-2018 VF_0148 aa7dde75dcafbda558ef0d3cdee0ab57 256 SUPERFAMILY SSF51735 6 256 2.97E-42 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0148 aa7dde75dcafbda558ef0d3cdee0ab57 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 255 1.2E-28 T 10-10-2018 VF_0148 aa7dde75dcafbda558ef0d3cdee0ab57 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 3.3E-7 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0148 aa7dde75dcafbda558ef0d3cdee0ab57 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 3.3E-7 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0148 aa7dde75dcafbda558ef0d3cdee0ab57 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.3E-7 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0148 aa7dde75dcafbda558ef0d3cdee0ab57 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 3.3E-7 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0148 aa7dde75dcafbda558ef0d3cdee0ab57 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 3.3E-7 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VF_0911 1f11576e6c620ddcb259c01da81e2211 434 SUPERFAMILY SSF53613 31 417 7.33E-45 T 10-10-2018 IPR029056 Ribokinase-like VF_0911 1f11576e6c620ddcb259c01da81e2211 434 Pfam PF00294 pfkB family carbohydrate kinase 91 293 2.3E-10 T 10-10-2018 IPR011611 Carbohydrate kinase PfkB VF_2056 dec73ed6c161c91e6cb2f22c64e29149 289 Pfam PF08543 Phosphomethylpyrimidine kinase 76 264 5.2E-20 T 10-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 VF_2056 dec73ed6c161c91e6cb2f22c64e29149 289 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 1 288 53.319 T 10-10-2018 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 VF_2056 dec73ed6c161c91e6cb2f22c64e29149 289 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 288 1.8E-113 T 10-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 VF_2056 dec73ed6c161c91e6cb2f22c64e29149 289 Gene3D G3DSA:3.40.1190.20 1 289 6.4E-87 T 10-10-2018 IPR029056 Ribokinase-like VF_2056 dec73ed6c161c91e6cb2f22c64e29149 289 SUPERFAMILY SSF53613 1 286 2.18E-70 T 10-10-2018 IPR029056 Ribokinase-like VF_1526 6fd0fd8639b06090c892bd2893e1e637 229 SUPERFAMILY SSF103039 15 177 8.63E-23 T 10-10-2018 IPR028976 CheC-like superfamily VF_1526 6fd0fd8639b06090c892bd2893e1e637 229 Gene3D G3DSA:3.40.1550.10 12 178 1.1E-19 T 10-10-2018 IPR028976 CheC-like superfamily VF_1526 6fd0fd8639b06090c892bd2893e1e637 229 Pfam PF11813 Protein of unknown function (DUF3334) 7 229 5.1E-116 T 10-10-2018 IPR024513 Protein of unknown function DUF3334 VF_1210 b2c768f557c92d5260caa3f7c8665690 248 Pfam PF07070 SpoOM protein 2 215 2.0E-58 T 10-10-2018 IPR009776 Sporulation stage 0, protein M VF_A1132 e65e4d7dd5750948f6870dd785b4fb72 92 Pfam PF11747 Killing trait 13 79 2.0E-27 T 10-10-2018 IPR021070 Killing trait, RebB VF_A1146 8a9ae0c54374642e21552edc5669afcc 327 PIRSF PIRSF000723 6 307 1.1E-100 T 10-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 VF_A1146 8a9ae0c54374642e21552edc5669afcc 327 SUPERFAMILY SSF53633 9 305 2.62E-63 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_A1146 8a9ae0c54374642e21552edc5669afcc 327 Pfam PF00696 Amino acid kinase family 9 284 1.9E-26 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VF_A1146 8a9ae0c54374642e21552edc5669afcc 327 Gene3D G3DSA:3.40.1160.10 4 308 1.2E-97 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VF_A1146 8a9ae0c54374642e21552edc5669afcc 327 PRINTS PR01469 Bacterial carbamate kinase signature 156 175 1.7E-50 T 10-10-2018 VF_A1146 8a9ae0c54374642e21552edc5669afcc 327 PRINTS PR01469 Bacterial carbamate kinase signature 210 225 1.7E-50 T 10-10-2018 VF_A1146 8a9ae0c54374642e21552edc5669afcc 327 PRINTS PR01469 Bacterial carbamate kinase signature 48 67 1.7E-50 T 10-10-2018 VF_A1146 8a9ae0c54374642e21552edc5669afcc 327 PRINTS PR01469 Bacterial carbamate kinase signature 78 96 1.7E-50 T 10-10-2018 VF_A1146 8a9ae0c54374642e21552edc5669afcc 327 PRINTS PR01469 Bacterial carbamate kinase signature 261 276 1.7E-50 T 10-10-2018 VF_A1146 8a9ae0c54374642e21552edc5669afcc 327 PRINTS PR01469 Bacterial carbamate kinase signature 108 127 1.7E-50 T 10-10-2018 VF_A1146 8a9ae0c54374642e21552edc5669afcc 327 PRINTS PR01469 Bacterial carbamate kinase signature 179 197 1.7E-50 T 10-10-2018 VF_A0186 9e629a08c4717daee356f97bbe0251f6 260 Pfam PF01618 MotA/TolQ/ExbB proton channel family 108 226 5.6E-20 T 10-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VF_A0186 9e629a08c4717daee356f97bbe0251f6 260 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 192 209 - T 10-10-2018 IPR000540 Flagellar motor protein MotA, conserved site VF_2463 e0b210bc988fd95fec25c21047203781 183 SUPERFAMILY SSF55811 4 180 2.71E-38 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VF_2463 e0b210bc988fd95fec25c21047203781 183 Gene3D G3DSA:3.90.79.10 7 183 7.9E-46 T 10-10-2018 VF_2463 e0b210bc988fd95fec25c21047203781 183 ProSitePatterns PS00893 Nudix box signature. 80 101 - T 10-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VF_2463 e0b210bc988fd95fec25c21047203781 183 Pfam PF00293 NUDIX domain 47 155 1.3E-14 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VF_0588 d1a469b828db7b4f1aa83b8e9ba114ef 269 Pfam PF00899 ThiF family 25 262 2.2E-37 T 10-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 VF_0588 d1a469b828db7b4f1aa83b8e9ba114ef 269 Gene3D G3DSA:3.40.50.720 6 269 7.0E-110 T 10-10-2018 VF_0588 d1a469b828db7b4f1aa83b8e9ba114ef 269 SUPERFAMILY SSF69572 9 266 8.11E-64 T 10-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 VF_A0715 8a2b0cf8bafef0636bd67520e9b0be2e 1105 Gene3D G3DSA:2.10.10.20 354 407 1.0E-11 T 10-10-2018 VF_A0715 8a2b0cf8bafef0636bd67520e9b0be2e 1105 SMART SM00495 362 403 3.3E-5 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_A0715 8a2b0cf8bafef0636bd67520e9b0be2e 1105 SMART SM00495 17 62 19.0 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_A0715 8a2b0cf8bafef0636bd67520e9b0be2e 1105 SMART SM00495 89 134 3.8 T 10-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_A0715 8a2b0cf8bafef0636bd67520e9b0be2e 1105 SUPERFAMILY SSF51055 357 407 4.12E-13 T 10-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VF_A0715 8a2b0cf8bafef0636bd67520e9b0be2e 1105 Gene3D G3DSA:2.60.40.10 246 343 1.2E-13 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A0715 8a2b0cf8bafef0636bd67520e9b0be2e 1105 Gene3D G3DSA:2.60.40.10 145 245 1.6E-11 T 10-10-2018 IPR013783 Immunoglobulin-like fold VF_A0715 8a2b0cf8bafef0636bd67520e9b0be2e 1105 Pfam PF14600 Cellulose-binding domain 353 407 4.6E-13 T 10-10-2018 IPR032798 Endoglucanase Z, cellulose-binding domain KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VF_1881 a528cea83dc54d0ba521a8dfd9406179 103 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 3 97 1.8E-25 T 10-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 VF_1881 a528cea83dc54d0ba521a8dfd9406179 103 SUPERFAMILY SSF101498 2 97 4.45E-20 T 10-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily VF_1881 a528cea83dc54d0ba521a8dfd9406179 103 Pfam PF04316 Anti-sigma-28 factor, FlgM 41 94 1.4E-19 T 10-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal VF_A0707 a2dd639439cf699479931bcb3eedfc6d 290 SUPERFAMILY SSF103481 37 143 3.53E-7 T 10-10-2018 VF_A0707 a2dd639439cf699479931bcb3eedfc6d 290 SUPERFAMILY SSF103481 198 290 9.68E-6 T 10-10-2018 VF_A0453 6df3804ec89129c2b9fc74ed7f4adfa3 408 Gene3D G3DSA:3.20.20.140 67 365 5.1E-155 T 10-10-2018 VF_A0453 6df3804ec89129c2b9fc74ed7f4adfa3 408 Pfam PF01979 Amidohydrolase family 63 381 3.3E-14 T 10-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VF_A0453 6df3804ec89129c2b9fc74ed7f4adfa3 408 Gene3D G3DSA:2.30.40.10 21 402 5.1E-155 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_A0453 6df3804ec89129c2b9fc74ed7f4adfa3 408 SUPERFAMILY SSF51556 66 365 1.63E-82 T 10-10-2018 IPR032466 Metal-dependent hydrolase VF_A0453 6df3804ec89129c2b9fc74ed7f4adfa3 408 SUPERFAMILY SSF51338 1 406 1.24E-23 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VF_A0453 6df3804ec89129c2b9fc74ed7f4adfa3 408 TIGRFAM TIGR01224 hutI: imidazolonepropionase 28 404 5.2E-145 T 10-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VF_A0453 6df3804ec89129c2b9fc74ed7f4adfa3 408 Hamap MF_00372 Imidazolonepropionase [hutI]. 2 405 40.662 T 10-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VF_2012 9af97a0e64f87c7137c08af41b9fec10 344 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 9 331 4.7E-68 T 10-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid VF_2012 9af97a0e64f87c7137c08af41b9fec10 344 Pfam PF05125 Phage major capsid protein, P2 family 11 331 1.2E-113 T 10-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid VF_2565 c2517adb6a9fa70433fb01669b7b9540 288 Gene3D G3DSA:3.40.1380.10 61 207 2.4E-110 T 10-10-2018 VF_2565 c2517adb6a9fa70433fb01669b7b9540 288 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 288 36.375 T 10-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2565 c2517adb6a9fa70433fb01669b7b9540 288 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 274 287 - T 10-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2565 c2517adb6a9fa70433fb01669b7b9540 288 Pfam PF00231 ATP synthase 5 287 2.0E-97 T 10-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2565 c2517adb6a9fa70433fb01669b7b9540 288 Gene3D G3DSA:1.10.287.80 6 284 2.4E-110 T 10-10-2018 VF_2565 c2517adb6a9fa70433fb01669b7b9540 288 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 288 6.3E-110 T 10-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2565 c2517adb6a9fa70433fb01669b7b9540 288 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 9.5E-36 T 10-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2565 c2517adb6a9fa70433fb01669b7b9540 288 PRINTS PR00126 ATP synthase gamma subunit signature 235 254 9.5E-36 T 10-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2565 c2517adb6a9fa70433fb01669b7b9540 288 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 9.5E-36 T 10-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2565 c2517adb6a9fa70433fb01669b7b9540 288 PRINTS PR00126 ATP synthase gamma subunit signature 266 287 9.5E-36 T 10-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_2565 c2517adb6a9fa70433fb01669b7b9540 288 SUPERFAMILY SSF52943 2 288 1.47E-97 T 10-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VF_0657 53a5ee465dc944ef98a8ca71d4c0d0bd 364 Gene3D G3DSA:3.40.630.10 24 329 7.2E-94 T 10-10-2018 VF_0657 53a5ee465dc944ef98a8ca71d4c0d0bd 364 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 60 326 2.3E-70 T 10-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 VF_0657 53a5ee465dc944ef98a8ca71d4c0d0bd 364 PIRSF PIRSF039012 13 334 1.6E-92 T 10-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 VF_0657 53a5ee465dc944ef98a8ca71d4c0d0bd 364 SUPERFAMILY SSF53187 35 328 3.97E-76 T 10-10-2018 VF_0610 fd4ea9066b6a96d1d01d6ff2826d5410 102 Pfam PF11743 Protein of unknown function (DUF3301) 5 95 1.2E-29 T 10-10-2018 IPR021732 Protein of unknown function DUF3301 VF_A0016 3e9579b82c1cc773bfbd4b9068073d0e 212 Pfam PF00929 Exonuclease 16 171 4.1E-30 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_A0016 3e9579b82c1cc773bfbd4b9068073d0e 212 SMART SM00479 14 181 2.3E-39 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VF_A0016 3e9579b82c1cc773bfbd4b9068073d0e 212 SUPERFAMILY SSF53098 12 181 3.18E-52 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_A0016 3e9579b82c1cc773bfbd4b9068073d0e 212 Gene3D G3DSA:3.30.420.10 9 182 1.9E-47 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_A0016 3e9579b82c1cc773bfbd4b9068073d0e 212 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 13 183 1.3E-27 T 10-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VF_A1137 8d8e2cf589da352ddddc08e67b346956 92 Pfam PF11747 Killing trait 13 78 1.5E-27 T 10-10-2018 IPR021070 Killing trait, RebB VF_1193 f329cce6b7598db547610aa4917e4ec3 372 PIRSF PIRSF028101 4 370 3.6E-124 T 10-10-2018 IPR008311 Uncharacterised conserved protein UCP028101 VF_1193 f329cce6b7598db547610aa4917e4ec3 372 SUPERFAMILY SSF50974 5 347 1.28E-21 T 10-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 VF_1193 f329cce6b7598db547610aa4917e4ec3 372 Pfam PF07433 Protein of unknown function (DUF1513) 68 369 1.4E-106 T 10-10-2018 IPR008311 Uncharacterised conserved protein UCP028101 VF_0061 75bae6377d56b0b19580e04d480e9b14 87 SUPERFAMILY SSF54292 3 86 3.41E-27 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VF_0061 75bae6377d56b0b19580e04d480e9b14 87 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 36 44 - T 10-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 VF_0061 75bae6377d56b0b19580e04d480e9b14 87 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 78 3.9E-15 T 10-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VF_0061 75bae6377d56b0b19580e04d480e9b14 87 Gene3D G3DSA:3.10.20.30 1 86 6.4E-25 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_1454 5ef07491fa2f9527028c3e0350a0b596 460 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 93 108 - T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_1454 5ef07491fa2f9527028c3e0350a0b596 460 PRINTS PR00175 Sodium/alanine symporter signature 413 433 1.0E-51 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_1454 5ef07491fa2f9527028c3e0350a0b596 460 PRINTS PR00175 Sodium/alanine symporter signature 213 232 1.0E-51 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_1454 5ef07491fa2f9527028c3e0350a0b596 460 PRINTS PR00175 Sodium/alanine symporter signature 308 326 1.0E-51 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_1454 5ef07491fa2f9527028c3e0350a0b596 460 PRINTS PR00175 Sodium/alanine symporter signature 354 376 1.0E-51 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_1454 5ef07491fa2f9527028c3e0350a0b596 460 PRINTS PR00175 Sodium/alanine symporter signature 93 115 1.0E-51 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_1454 5ef07491fa2f9527028c3e0350a0b596 460 PRINTS PR00175 Sodium/alanine symporter signature 185 203 1.0E-51 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_1454 5ef07491fa2f9527028c3e0350a0b596 460 Pfam PF01235 Sodium:alanine symporter family 55 457 1.6E-143 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_1454 5ef07491fa2f9527028c3e0350a0b596 460 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 441 1.5E-154 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_A1079 41ccd9f06f5a548be38a4797ba122014 362 Pfam PF01594 AI-2E family transporter 22 347 1.7E-23 T 10-10-2018 IPR002549 Transmembrane protein TqsA-like VF_1089 d24ce32e5d1071bf55719e4b69f41610 310 Pfam PF16868 NMT1-like family 27 305 3.3E-76 T 10-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family VF_1089 d24ce32e5d1071bf55719e4b69f41610 310 SUPERFAMILY SSF53850 23 306 6.93E-65 T 10-10-2018 VF_1089 d24ce32e5d1071bf55719e4b69f41610 310 Gene3D G3DSA:3.40.190.10 27 305 4.9E-87 T 10-10-2018 VF_1089 d24ce32e5d1071bf55719e4b69f41610 310 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 21 306 6.6E-80 T 10-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family VF_1089 d24ce32e5d1071bf55719e4b69f41610 310 Gene3D G3DSA:3.40.190.10 109 246 4.9E-87 T 10-10-2018 VF_1292 ed9d6fb4421967be51e56d20c15c0c92 172 Pfam PF07977 FabA-like domain 29 158 4.9E-53 T 10-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VF_1292 ed9d6fb4421967be51e56d20c15c0c92 172 SUPERFAMILY SSF54637 4 169 2.24E-55 T 10-10-2018 IPR029069 HotDog domain superfamily VF_1292 ed9d6fb4421967be51e56d20c15c0c92 172 Gene3D G3DSA:3.10.129.10 2 172 1.4E-63 T 10-10-2018 VF_1292 ed9d6fb4421967be51e56d20c15c0c92 172 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 2 172 51.631 T 10-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VF_1292 ed9d6fb4421967be51e56d20c15c0c92 172 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 6 172 1.4E-92 T 10-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VF_0044 219e60073b7cc2c394c6d4d1552bbf8f 506 Pfam PF02646 RmuC family 182 477 1.2E-104 T 10-10-2018 IPR003798 DNA recombination RmuC VF_2027 3c8a2df8e65e13e763b1e1b345f310b9 411 Pfam PF07157 DNA circularisation protein N-terminus 6 90 4.3E-21 T 10-10-2018 IPR009826 DNA circulation, N-terminal VF_2027 3c8a2df8e65e13e763b1e1b345f310b9 411 ProDom PD332323 CIRCULATION DNA PROTEIN TAIL/DNA PHAGE PROPHAGE VIRION FLUMU BACTERIOPHAGE MU-LIKE 25 118 1.0E-49 T 10-10-2018 IPR009826 DNA circulation, N-terminal VF_A0277 6d384d5c3a8ede54ceba17232b0f1c69 165 Pfam PF05618 Putative ATP-dependant zinc protease 28 163 3.6E-21 T 10-10-2018 VF_A0277 6d384d5c3a8ede54ceba17232b0f1c69 165 Gene3D G3DSA:2.40.70.10 25 159 6.7E-29 T 10-10-2018 IPR021109 Aspartic peptidase domain superfamily VF_A0277 6d384d5c3a8ede54ceba17232b0f1c69 165 SUPERFAMILY SSF50630 28 162 2.37E-32 T 10-10-2018 IPR021109 Aspartic peptidase domain superfamily VF_1334 61924c2662a90f75e3579b237e56cf26 265 Gene3D G3DSA:3.30.460.10 10 141 2.7E-20 T 10-10-2018 VF_1334 61924c2662a90f75e3579b237e56cf26 265 Pfam PF01909 Nucleotidyltransferase domain 16 76 5.6E-6 T 10-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 VF_1334 61924c2662a90f75e3579b237e56cf26 265 SUPERFAMILY SSF81301 2 78 6.95E-10 T 10-10-2018 VF_1583 5be666d88f70fb8fcd69c2c9e27bff1d 268 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 10-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 VF_1583 5be666d88f70fb8fcd69c2c9e27bff1d 268 Gene3D G3DSA:3.60.10.10 1 268 9.5E-76 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VF_1583 5be666d88f70fb8fcd69c2c9e27bff1d 268 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 267 7.3E-96 T 10-10-2018 VF_1583 5be666d88f70fb8fcd69c2c9e27bff1d 268 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 260 8.0E-19 T 10-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase VF_1583 5be666d88f70fb8fcd69c2c9e27bff1d 268 SUPERFAMILY SSF56219 1 268 2.88E-83 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VF_1583 5be666d88f70fb8fcd69c2c9e27bff1d 268 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 267 4.5E-85 T 10-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 VF_1764 0e7c0abc532703b38789a49557627d26 72 Pfam PF01176 Translation initiation factor 1A / IF-1 8 70 5.3E-27 T 10-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 VF_1764 0e7c0abc532703b38789a49557627d26 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 6.3E-38 T 10-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 VF_1764 0e7c0abc532703b38789a49557627d26 72 SUPERFAMILY SSF50249 1 70 4.07E-28 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_1764 0e7c0abc532703b38789a49557627d26 72 SMART SM00316 4 72 2.7E-6 T 10-10-2018 IPR022967 RNA-binding domain, S1 VF_1764 0e7c0abc532703b38789a49557627d26 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.131 T 10-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 VF_1764 0e7c0abc532703b38789a49557627d26 72 Gene3D G3DSA:2.40.50.140 1 72 3.1E-36 T 10-10-2018 VF_1271 97dbaf7f8940eba4b6bddd75a4c9826f 293 Pfam PF01925 Sulfite exporter TauE/SafE 11 148 1.0E-12 T 10-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 VF_1354 80bbaeb4a84db84487164540dadcf42c 462 Gene3D G3DSA:3.30.950.30 2 137 6.6E-13 T 10-10-2018 IPR038461 Schlafen, AAA domain superfamily VF_1354 80bbaeb4a84db84487164540dadcf42c 462 Pfam PF04326 Putative DNA-binding domain 19 136 4.9E-13 T 10-10-2018 IPR007421 Schlafen, AAA domain GO:0005524 VF_1354 80bbaeb4a84db84487164540dadcf42c 462 Pfam PF13749 Putative ATP-dependent DNA helicase recG C-terminal 309 394 6.3E-13 T 10-10-2018 IPR025831 ATP-dependent DNA helicase RecG, C-terminal domain VF_1354 80bbaeb4a84db84487164540dadcf42c 462 Gene3D G3DSA:3.30.565.60 233 397 2.2E-31 T 10-10-2018 IPR038475 RecG, C-terminal domain superfamily VF_2351 3acc0fb9bd55d3dc87af5921a23a6ad4 381 Gene3D G3DSA:2.70.70.10 240 381 1.3E-34 T 10-10-2018 IPR011055 Duplicated hybrid motif VF_2351 3acc0fb9bd55d3dc87af5921a23a6ad4 381 Gene3D G3DSA:1.20.5.340 29 118 4.1E-6 T 10-10-2018 VF_2351 3acc0fb9bd55d3dc87af5921a23a6ad4 381 Pfam PF01551 Peptidase family M23 282 375 9.9E-26 T 10-10-2018 IPR016047 Peptidase M23 VF_2351 3acc0fb9bd55d3dc87af5921a23a6ad4 381 SUPERFAMILY SSF51261 170 379 5.23E-48 T 10-10-2018 IPR011055 Duplicated hybrid motif VF_0572 51fa260b3a50b9012142ffee922acfb5 145 Gene3D G3DSA:3.30.700.10 20 144 1.2E-17 T 10-10-2018 VF_0572 51fa260b3a50b9012142ffee922acfb5 145 Pfam PF07963 Prokaryotic N-terminal methylation motif 15 39 4.7E-9 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0572 51fa260b3a50b9012142ffee922acfb5 145 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 40 125 7.0E-16 T 10-10-2018 IPR031982 Type IV minor pilin ComP VF_0572 51fa260b3a50b9012142ffee922acfb5 145 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 17 37 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0572 51fa260b3a50b9012142ffee922acfb5 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 17 39 6.1E-9 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_0572 51fa260b3a50b9012142ffee922acfb5 145 SUPERFAMILY SSF54523 19 139 2.15E-18 T 10-10-2018 VF_A0422 69fb74dc34c00ef89255523a8a27e598 174 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 23 164 3.3E-46 T 10-10-2018 IPR018639 Domain of unknown function DUF2062 VF_A0472 4bec7022b5a5e95d30ffa81e6103be25 207 Gene3D G3DSA:2.40.160.20 21 207 6.1E-20 T 10-10-2018 VF_A0472 4bec7022b5a5e95d30ffa81e6103be25 207 SUPERFAMILY SSF56925 24 207 1.23E-21 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VF_A0472 4bec7022b5a5e95d30ffa81e6103be25 207 Pfam PF13505 Outer membrane protein beta-barrel domain 6 207 5.3E-14 T 10-10-2018 IPR027385 Outer membrane protein beta-barrel VF_B0002 18923c50b15f3a4073b7fa21df0d31c3 327 PIRSF PIRSF037112 38 327 7.1E-127 T 10-10-2018 IPR017113 Antirestriction, ArdC VF_B0002 18923c50b15f3a4073b7fa21df0d31c3 327 Pfam PF08401 Domain of unknown function (DUF1738) 51 165 5.6E-38 T 10-10-2018 IPR013610 Domain of unknown function DUF1738 VF_2155 923eb3d15c86a76265ed802ab7051eaf 381 Pfam PF05651 Putative sugar diacid recognition 3 136 2.7E-52 T 10-10-2018 IPR008599 Putative sugar diacid recognition VF_2155 923eb3d15c86a76265ed802ab7051eaf 381 Pfam PF13556 PucR C-terminal helix-turn-helix domain 320 375 1.9E-18 T 10-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain VF_2155 923eb3d15c86a76265ed802ab7051eaf 381 Gene3D G3DSA:1.10.10.2840 256 381 2.0E-17 T 10-10-2018 VF_A0607 8d6d9d7659516f4ffd6d0187ba970dda 147 SUPERFAMILY SSF55785 10 128 2.62E-10 T 10-10-2018 IPR035965 PAS domain superfamily VF_A0607 8d6d9d7659516f4ffd6d0187ba970dda 147 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 16 143 6.2E-6 T 10-10-2018 IPR000014 PAS domain VF_A0607 8d6d9d7659516f4ffd6d0187ba970dda 147 Gene3D G3DSA:3.30.450.20 6 141 3.2E-32 T 10-10-2018 VF_A0607 8d6d9d7659516f4ffd6d0187ba970dda 147 Pfam PF00989 PAS fold 16 135 1.2E-7 T 10-10-2018 IPR013767 PAS fold GO:0006355 VF_1090 b43c80510876d7663a8b5d5e70354005 636 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 129 552 1.6E-84 T 10-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit VF_1090 b43c80510876d7663a8b5d5e70354005 636 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 28 629 7.1E-175 T 10-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ VF_1307 28574c336f8224e2bbf787dd2afa34aa 224 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 7 213 1.7E-54 T 10-10-2018 IPR039447 Urease accessory protein UreH-like, transmembrane domain VF_2637 a463a4b295ce9f7506670dc398a556d1 73 SUPERFAMILY SSF64307 4 73 2.22E-8 T 10-10-2018 IPR036868 TusA-like domain superfamily VF_2637 a463a4b295ce9f7506670dc398a556d1 73 Gene3D G3DSA:3.30.110.40 1 73 8.4E-9 T 10-10-2018 IPR036868 TusA-like domain superfamily VF_2637 a463a4b295ce9f7506670dc398a556d1 73 Pfam PF01206 Sulfurtransferase TusA 5 64 5.9E-8 T 10-10-2018 IPR001455 TusA-like domain VF_2506 0814ae6c716d39bbca5cd2bb1a9f4f40 216 Pfam PF14187 Domain of unknown function (DUF4310) 6 213 1.4E-103 T 10-10-2018 IPR025456 Protein of unknown function DUF4310 VF_2506 0814ae6c716d39bbca5cd2bb1a9f4f40 216 TIGRFAM TIGR03579 EF_0833: conserved hypothetical protein EF_0833/AHA_3914 7 215 7.9E-123 T 10-10-2018 IPR025456 Protein of unknown function DUF4310 VF_A0104 f7555edd8ced6b9ed47770066311a1f6 224 SUPERFAMILY SSF51735 2 206 5.27E-28 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_A0104 f7555edd8ced6b9ed47770066311a1f6 224 Gene3D G3DSA:3.40.50.720 2 224 6.6E-41 T 10-10-2018 VF_A0488 0e44305f3a910bcbf31eb622391fefc0 291 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 255 275 7.3E-6 T 10-10-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 VF_0597 548a9517cf8d421fecbf5d5f68cc2b42 748 Gene3D G3DSA:1.25.40.10 325 522 1.6E-6 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0597 548a9517cf8d421fecbf5d5f68cc2b42 748 SUPERFAMILY SSF48452 184 331 3.03E-14 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0597 548a9517cf8d421fecbf5d5f68cc2b42 748 Gene3D G3DSA:1.25.40.10 171 324 3.7E-14 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0597 548a9517cf8d421fecbf5d5f68cc2b42 748 SMART SM00028 296 329 2.2 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0597 548a9517cf8d421fecbf5d5f68cc2b42 748 SMART SM00028 256 289 28.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0597 548a9517cf8d421fecbf5d5f68cc2b42 748 SMART SM00028 376 409 42.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0597 548a9517cf8d421fecbf5d5f68cc2b42 748 SMART SM00028 336 369 170.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0597 548a9517cf8d421fecbf5d5f68cc2b42 748 SMART SM00028 90 123 0.76 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_0597 548a9517cf8d421fecbf5d5f68cc2b42 748 SUPERFAMILY SSF48452 315 450 1.72E-6 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A1013 4574f1a708700cb202ef8b2241979f78 109 Pfam PF01627 Hpt domain 20 101 1.0E-5 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VF_A1013 4574f1a708700cb202ef8b2241979f78 109 Gene3D G3DSA:1.20.120.160 1 109 1.2E-13 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_A1013 4574f1a708700cb202ef8b2241979f78 109 SUPERFAMILY SSF47226 2 108 1.44E-17 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 VF_A0228 ccfe0884c438bf2e354391c8cd920887 179 Pfam PF16964 Putative tight adherence pilin protein F 3 179 8.0E-65 T 10-10-2018 IPR031582 Putative tight adherence pilin protein F VF_0163 59bb401c101a33df9f019ae66d7db02a 116 Pfam PF05635 23S rRNA-intervening sequence protein 4 105 1.1E-31 T 10-10-2018 IPR012657 23S rRNA-intervening sequence protein VF_0163 59bb401c101a33df9f019ae66d7db02a 116 Gene3D G3DSA:1.20.1440.60 1 115 6.9E-34 T 10-10-2018 IPR036583 23S rRNA-intervening sequence superfamily VF_0163 59bb401c101a33df9f019ae66d7db02a 116 TIGRFAM TIGR02436 TIGR02436: four helix bundle protein 8 112 1.2E-33 T 10-10-2018 IPR012657 23S rRNA-intervening sequence protein VF_0163 59bb401c101a33df9f019ae66d7db02a 116 SUPERFAMILY SSF158446 1 112 2.49E-35 T 10-10-2018 IPR036583 23S rRNA-intervening sequence superfamily VF_2059 4b24e8dafb3eadc83d5da086b34919de 489 TIGRFAM TIGR00835 agcS: amino acid carrier protein 28 455 1.2E-151 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2059 4b24e8dafb3eadc83d5da086b34919de 489 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 101 116 - T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2059 4b24e8dafb3eadc83d5da086b34919de 489 PRINTS PR00175 Sodium/alanine symporter signature 101 123 2.7E-56 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2059 4b24e8dafb3eadc83d5da086b34919de 489 PRINTS PR00175 Sodium/alanine symporter signature 192 210 2.7E-56 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2059 4b24e8dafb3eadc83d5da086b34919de 489 PRINTS PR00175 Sodium/alanine symporter signature 317 335 2.7E-56 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2059 4b24e8dafb3eadc83d5da086b34919de 489 PRINTS PR00175 Sodium/alanine symporter signature 424 444 2.7E-56 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2059 4b24e8dafb3eadc83d5da086b34919de 489 PRINTS PR00175 Sodium/alanine symporter signature 220 239 2.7E-56 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2059 4b24e8dafb3eadc83d5da086b34919de 489 PRINTS PR00175 Sodium/alanine symporter signature 363 385 2.7E-56 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_2059 4b24e8dafb3eadc83d5da086b34919de 489 Pfam PF01235 Sodium:alanine symporter family 66 467 5.2E-154 T 10-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VF_0324 165af4e965a74041def4c7ec84603a9d 311 TIGRFAM TIGR03899 TIGR03899: TIGR03899 family protein 50 298 1.3E-106 T 10-10-2018 IPR021254 Protein of unknown function DUF2806 VF_0324 165af4e965a74041def4c7ec84603a9d 311 Pfam PF10987 Protein of unknown function (DUF2806) 70 288 8.9E-84 T 10-10-2018 IPR021254 Protein of unknown function DUF2806 VF_2571 cd5234d069394ff010d54ab402d71336 129 Pfam PF03899 ATP synthase I chain 15 111 3.9E-20 T 10-10-2018 IPR005598 ATP synthase protein I VF_1420 25118b83b3be029586abd7467d093c73 436 Pfam PF13584 Oxygen tolerance 61 295 7.8E-25 T 10-10-2018 IPR025738 Aerotolerance-related protein BatD VF_1577 b5d2648f5cc4080e419c81e6d404f645 287 SUPERFAMILY SSF54637 5 114 3.43E-39 T 10-10-2018 IPR029069 HotDog domain superfamily VF_1577 b5d2648f5cc4080e419c81e6d404f645 287 Gene3D G3DSA:3.10.129.90 2 287 1.3E-105 T 10-10-2018 VF_1577 b5d2648f5cc4080e419c81e6d404f645 287 SUPERFAMILY SSF54637 116 285 2.31E-56 T 10-10-2018 IPR029069 HotDog domain superfamily VF_1577 b5d2648f5cc4080e419c81e6d404f645 287 Pfam PF13622 Thioesterase-like superfamily 33 282 3.1E-58 T 10-10-2018 VF_1577 b5d2648f5cc4080e419c81e6d404f645 287 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 12 283 8.4E-98 T 10-10-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 VF_1002 36eb8e589a324d7182282803baf87506 141 Pfam PF04965 Gene 25-like lysozyme 25 113 4.3E-15 T 10-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD VF_1002 36eb8e589a324d7182282803baf87506 141 Gene3D G3DSA:3.10.450.40 10 124 1.0E-8 T 10-10-2018 VF_1002 36eb8e589a324d7182282803baf87506 141 SUPERFAMILY SSF160719 23 121 6.67E-18 T 10-10-2018 VF_1002 36eb8e589a324d7182282803baf87506 141 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 4 131 2.1E-35 T 10-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein VF_1213 069cdbdcb08b0118d317bf0d85e4514a 96 Pfam PF13467 Ribbon-helix-helix domain 19 85 1.6E-24 T 10-10-2018 IPR027373 Ribbon-helix-helix domain VF_1213 069cdbdcb08b0118d317bf0d85e4514a 96 Gene3D G3DSA:1.10.3990.20 12 95 7.5E-31 T 10-10-2018 IPR038268 Ribbon-helix-helix domain superfamily VF_A0972 e2e16808a145a506e24f556638fd339c 346 Gene3D G3DSA:1.10.3470.10 5 343 5.4E-99 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_A0972 e2e16808a145a506e24f556638fd339c 346 Pfam PF01032 FecCD transport family 18 338 1.4E-90 T 10-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VF_A0972 e2e16808a145a506e24f556638fd339c 346 SUPERFAMILY SSF81345 4 338 7.98E-81 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_A0926 2ce5beda1543840ae937dd2376ac9ace 266 SUPERFAMILY SSF50182 81 154 4.58E-10 T 10-10-2018 IPR010920 LSM domain superfamily VF_A0926 2ce5beda1543840ae937dd2376ac9ace 266 Pfam PF00924 Mechanosensitive ion channel 45 170 5.4E-16 T 10-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VF_A0885 71c199728373358dd62254729df29486 256 SUPERFAMILY SSF52540 1 244 2.78E-21 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0885 71c199728373358dd62254729df29486 256 Pfam PF06564 Cellulose biosynthesis protein BcsQ 1 245 1.7E-45 T 10-10-2018 IPR017746 Cellulose synthase operon protein BcsQ VF_A0885 71c199728373358dd62254729df29486 256 TIGRFAM TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ 1 248 5.2E-88 T 10-10-2018 IPR017746 Cellulose synthase operon protein BcsQ VF_A0885 71c199728373358dd62254729df29486 256 Gene3D G3DSA:3.40.50.300 1 254 1.6E-19 T 10-10-2018 VF_0713 6b24ecd26af971144c2b0e9fdcf36ca6 80 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 10 65 8.0E-24 T 10-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 VF_0713 6b24ecd26af971144c2b0e9fdcf36ca6 80 PIRSF PIRSF006488 1 80 1.0E-22 T 10-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 VF_0713 6b24ecd26af971144c2b0e9fdcf36ca6 80 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 51 6.0E-22 T 10-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 VF_0713 6b24ecd26af971144c2b0e9fdcf36ca6 80 SUPERFAMILY SSF116842 2 71 2.48E-22 T 10-10-2018 VF_0713 6b24ecd26af971144c2b0e9fdcf36ca6 80 Pfam PF02609 Exonuclease VII small subunit 11 62 7.7E-21 T 10-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 VF_0713 6b24ecd26af971144c2b0e9fdcf36ca6 80 Gene3D G3DSA:1.10.287.1040 4 80 5.8E-25 T 10-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 VF_0713 6b24ecd26af971144c2b0e9fdcf36ca6 80 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 10 70 15.884 T 10-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 VF_1489 06470e1fd4664ae30207ae6722a14046 397 Pfam PF13679 Methyltransferase domain 103 227 3.0E-16 T 10-10-2018 IPR025714 Methyltransferase domain VF_1489 06470e1fd4664ae30207ae6722a14046 397 SUPERFAMILY SSF53335 104 229 3.01E-6 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_A1061 8a8c976a1de4cd46b29085eedf035943 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.9E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1061 8a8c976a1de4cd46b29085eedf035943 304 SUPERFAMILY SSF53850 88 295 3.26E-21 T 10-10-2018 VF_A1061 8a8c976a1de4cd46b29085eedf035943 304 Gene3D G3DSA:1.10.10.10 1 85 1.4E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A1061 8a8c976a1de4cd46b29085eedf035943 304 Gene3D G3DSA:3.40.190.10 88 291 1.4E-26 T 10-10-2018 VF_A1061 8a8c976a1de4cd46b29085eedf035943 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 5.5E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1061 8a8c976a1de4cd46b29085eedf035943 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 5.5E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1061 8a8c976a1de4cd46b29085eedf035943 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 5.5E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_A1061 8a8c976a1de4cd46b29085eedf035943 304 SUPERFAMILY SSF46785 2 82 2.45E-16 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A1061 8a8c976a1de4cd46b29085eedf035943 304 Gene3D G3DSA:3.40.190.10 169 269 1.4E-26 T 10-10-2018 VF_A1061 8a8c976a1de4cd46b29085eedf035943 304 Pfam PF03466 LysR substrate binding domain 95 284 1.4E-12 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1295 ee387d8a89007b3ebe7eb8b613866166 184 Pfam PF07273 Protein of unknown function (DUF1439) 25 177 2.7E-41 T 10-10-2018 IPR010835 Protein of unknown function DUF1439 VF_1295 ee387d8a89007b3ebe7eb8b613866166 184 Gene3D G3DSA:3.15.10.40 14 184 1.8E-46 T 10-10-2018 VF_0340 25364c12d46d8acc26e5c2a3c79b71d6 586 Pfam PF04932 O-Antigen ligase 220 373 9.7E-18 T 10-10-2018 IPR007016 O-antigen ligase-related VF_0340 25364c12d46d8acc26e5c2a3c79b71d6 586 Pfam PF15864 Protein glycosylation ligase 174 197 2.8E-9 T 10-10-2018 IPR031726 Protein glycosylation ligase domain VF_0340 25364c12d46d8acc26e5c2a3c79b71d6 586 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 393 582 1.1E-63 T 10-10-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal VF_A1070 fb4792badbb07cd58ed519c1c13d7b62 80 Pfam PF04219 Protein of unknown function, DUF 6 78 1.2E-20 T 10-10-2018 IPR007335 Protein of unknown function DUF413 VF_2036 a0d58746fe2b13093780f8307631ef02 177 Pfam PF06892 Phage regulatory protein CII (CP76) 10 168 7.1E-58 T 10-10-2018 IPR009679 Bacteriophage 186, CII VF_1446 0d34cfc8a009036dd1909552e28301e9 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 320 1.4E-53 T 10-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 VF_1730 0eb13b4350b1b63fc78f753305ca68cc 488 Pfam PF00209 Sodium:neurotransmitter symporter family 123 478 4.1E-78 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1730 0eb13b4350b1b63fc78f753305ca68cc 488 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 27 41 - T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1730 0eb13b4350b1b63fc78f753305ca68cc 488 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 84 110 1.4E-38 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1730 0eb13b4350b1b63fc78f753305ca68cc 488 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 11 32 1.4E-38 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1730 0eb13b4350b1b63fc78f753305ca68cc 488 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 40 59 1.4E-38 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1730 0eb13b4350b1b63fc78f753305ca68cc 488 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 257 277 1.4E-38 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1730 0eb13b4350b1b63fc78f753305ca68cc 488 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 388 408 1.4E-38 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1730 0eb13b4350b1b63fc78f753305ca68cc 488 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 311 330 1.4E-38 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1730 0eb13b4350b1b63fc78f753305ca68cc 488 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 428 448 1.4E-38 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VF_1730 0eb13b4350b1b63fc78f753305ca68cc 488 SUPERFAMILY SSF161070 3 477 7.59E-150 T 10-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 VF_1371 d4edb6b9a3e9c75e7fafd3484dd50400 301 Pfam PF06166 Protein of unknown function (DUF979) 3 301 1.4E-114 T 10-10-2018 IPR009323 Protein of unknown function DUF979 VF_2248 9aa52776b42253f165dd193af24a2df6 198 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 2 194 3.6E-73 T 10-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 VF_2248 9aa52776b42253f165dd193af24a2df6 198 SMART SM01207 10 185 2.8E-82 T 10-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 VF_2248 9aa52776b42253f165dd193af24a2df6 198 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 183 3.6E-49 T 10-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 VF_2248 9aa52776b42253f165dd193af24a2df6 198 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 7 193 18.177 T 10-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 VF_2294 962ebb6a3612fd03eef2babb067af213 172 PIRSF PIRSF016481 1 172 3.3E-48 T 10-10-2018 IPR007446 Pilus assembly protein PilP VF_2294 962ebb6a3612fd03eef2babb067af213 172 Pfam PF04351 Pilus assembly protein, PilP 25 170 2.5E-43 T 10-10-2018 IPR007446 Pilus assembly protein PilP VF_2294 962ebb6a3612fd03eef2babb067af213 172 Gene3D G3DSA:2.30.30.830 78 171 5.4E-26 T 10-10-2018 VF_2259 d85b8b6aea827fee354c0730f56c948a 220 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 68 5.3E-15 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_2259 d85b8b6aea827fee354c0730f56c948a 220 Pfam PF07729 FCD domain 78 207 1.1E-11 T 10-10-2018 IPR011711 GntR, C-terminal VF_2259 d85b8b6aea827fee354c0730f56c948a 220 SMART SM00345 10 68 1.9E-9 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_2259 d85b8b6aea827fee354c0730f56c948a 220 SUPERFAMILY SSF48008 75 214 4.18E-11 T 10-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VF_2259 d85b8b6aea827fee354c0730f56c948a 220 Gene3D G3DSA:1.10.10.10 1 69 1.1E-15 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_2259 d85b8b6aea827fee354c0730f56c948a 220 SUPERFAMILY SSF46785 2 72 1.87E-14 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_2259 d85b8b6aea827fee354c0730f56c948a 220 Gene3D G3DSA:1.20.120.530 74 217 2.6E-15 T 10-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VF_A0482 dd54c435819364b0e7ce10db2b7ee5f9 407 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 5 406 23.675 T 10-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VF_A0482 dd54c435819364b0e7ce10db2b7ee5f9 407 Pfam PF03616 Sodium/glutamate symporter 6 375 3.9E-147 T 10-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VF_A0482 dd54c435819364b0e7ce10db2b7ee5f9 407 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 10 406 1.3E-132 T 10-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VF_A0679 25f1b98cf715f9f8acb0d3f05bc892c9 319 Gene3D G3DSA:3.40.50.410 93 315 5.1E-5 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_A0679 25f1b98cf715f9f8acb0d3f05bc892c9 319 Pfam PF01882 Protein of unknown function DUF58 56 140 1.5E-22 T 10-10-2018 IPR002881 Domain of unknown function DUF58 VF_A0679 25f1b98cf715f9f8acb0d3f05bc892c9 319 SUPERFAMILY SSF53300 92 238 1.22E-7 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_A0498 3df6db018ac8e1dbcdeb612614f25726 549 Pfam PF07728 AAA domain (dynein-related subfamily) 49 179 3.8E-23 T 10-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 VF_A0498 3df6db018ac8e1dbcdeb612614f25726 549 Gene3D G3DSA:1.10.8.300 229 296 9.9E-27 T 10-10-2018 VF_A0498 3df6db018ac8e1dbcdeb612614f25726 549 Pfam PF12592 Protein of unknown function (DUF3763) 481 531 1.7E-17 T 10-10-2018 IPR022547 ATPase, RavA, C-terminal GO:0042626 VF_A0498 3df6db018ac8e1dbcdeb612614f25726 549 SUPERFAMILY SSF52540 19 296 2.29E-20 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0498 3df6db018ac8e1dbcdeb612614f25726 549 Gene3D G3DSA:3.40.50.300 9 228 4.8E-59 T 10-10-2018 VF_A0498 3df6db018ac8e1dbcdeb612614f25726 549 SMART SM00382 46 189 1.1E-5 T 10-10-2018 IPR003593 AAA+ ATPase domain VF_A1108 b3012fdae7e87a96a883a15435bf172f 173 Gene3D G3DSA:3.40.50.360 1 173 1.2E-34 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_A1108 b3012fdae7e87a96a883a15435bf172f 173 Pfam PF03358 NADPH-dependent FMN reductase 1 128 1.3E-28 T 10-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 VF_A1108 b3012fdae7e87a96a883a15435bf172f 173 SUPERFAMILY SSF52218 1 170 4.19E-38 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_0540 7d00b0e69811f59f8a4f21679f72ef79 376 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 20 374 5.3E-159 T 10-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 VF_0540 7d00b0e69811f59f8a4f21679f72ef79 376 PIRSF PIRSF015658 1 376 1.3E-177 T 10-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 VF_0540 7d00b0e69811f59f8a4f21679f72ef79 376 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 20 370 3.2E-169 T 10-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 VF_A0060 cb79b60274a1d1918c6b9d5a6fcc86c3 147 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 145 1.1E-29 T 10-10-2018 IPR002178 PTS EIIA type-2 domain VF_A0060 cb79b60274a1d1918c6b9d5a6fcc86c3 147 SUPERFAMILY SSF55804 1 145 9.94E-34 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0060 cb79b60274a1d1918c6b9d5a6fcc86c3 147 Gene3D G3DSA:3.40.930.10 1 146 1.5E-45 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0345 b71bc0b36055337dd11fee6c5381ce24 476 Pfam PF13520 Amino acid permease 10 443 7.9E-28 T 10-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VF_A0345 b71bc0b36055337dd11fee6c5381ce24 476 PIRSF PIRSF006060 1 476 9.7E-46 T 10-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VF_A0345 b71bc0b36055337dd11fee6c5381ce24 476 Gene3D G3DSA:1.20.1740.10 13 473 3.4E-9 T 10-10-2018 VF_A0819 79b61b3e30c1fba02586332dc2f3c51e 277 SUPERFAMILY SSF103481 14 117 5.89E-12 T 10-10-2018 VF_A0819 79b61b3e30c1fba02586332dc2f3c51e 277 SUPERFAMILY SSF103481 167 264 7.85E-11 T 10-10-2018 VF_A0819 79b61b3e30c1fba02586332dc2f3c51e 277 Pfam PF00892 EamA-like transporter family 130 259 3.0E-15 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_A0819 79b61b3e30c1fba02586332dc2f3c51e 277 Pfam PF00892 EamA-like transporter family 4 114 2.5E-15 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_0316 8390eb9c0e5f54a9c6447926d8f457a7 280 SUPERFAMILY SSF103481 46 147 4.97E-12 T 10-10-2018 VF_0316 8390eb9c0e5f54a9c6447926d8f457a7 280 SUPERFAMILY SSF103481 184 274 2.48E-12 T 10-10-2018 VF_0316 8390eb9c0e5f54a9c6447926d8f457a7 280 Pfam PF00892 EamA-like transporter family 12 143 1.7E-14 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_0316 8390eb9c0e5f54a9c6447926d8f457a7 280 Pfam PF00892 EamA-like transporter family 149 274 3.5E-12 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VF_1804 9a379001bcd27dc4721d12c1c8b3b4d0 213 Pfam PF03458 UPF0126 domain 91 163 6.6E-22 T 10-10-2018 IPR005115 Uncharacterised domain UPF0126 VF_1804 9a379001bcd27dc4721d12c1c8b3b4d0 213 Pfam PF03458 UPF0126 domain 5 78 1.3E-19 T 10-10-2018 IPR005115 Uncharacterised domain UPF0126 VF_A0346 24c1b543717b33689a746798ab9f308a 150 SUPERFAMILY SSF51197 3 143 1.95E-23 T 10-10-2018 VF_A0346 24c1b543717b33689a746798ab9f308a 150 Gene3D G3DSA:2.60.120.370 1 143 1.2E-12 T 10-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily VF_A0346 24c1b543717b33689a746798ab9f308a 150 Pfam PF04074 Domain of unknown function (DUF386) 3 140 2.0E-24 T 10-10-2018 IPR004375 YhcH/YjgK/YiaL family VF_A0880 ae485c7a5babfe2a494e9920fe2a04ca 283 Gene3D G3DSA:1.10.10.60 179 281 7.6E-17 T 10-10-2018 VF_A0880 ae485c7a5babfe2a494e9920fe2a04ca 283 Pfam PF12833 Helix-turn-helix domain 202 280 1.2E-8 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_A0880 ae485c7a5babfe2a494e9920fe2a04ca 283 SMART SM00342 196 279 1.7E-5 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VF_0191 4e0742e75bf5b3cb01e33b4ad5835ad2 345 Pfam PF02719 Polysaccharide biosynthesis protein 7 282 4.7E-102 T 10-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain VF_0191 4e0742e75bf5b3cb01e33b4ad5835ad2 345 SUPERFAMILY SSF51735 1 264 3.14E-52 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily VF_0191 4e0742e75bf5b3cb01e33b4ad5835ad2 345 Gene3D G3DSA:3.90.25.30 166 320 1.9E-131 T 10-10-2018 VF_0191 4e0742e75bf5b3cb01e33b4ad5835ad2 345 Gene3D G3DSA:3.40.50.720 4 309 1.9E-131 T 10-10-2018 VF_0191 4e0742e75bf5b3cb01e33b4ad5835ad2 345 Pfam PF08485 Polysaccharide biosynthesis protein C-terminal 285 331 5.6E-23 T 10-10-2018 IPR013692 UDP-glucose 4-epimerase CapD, C-terminal domain GO:0003978|GO:0009103 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344 VF_1301 ab87fd590555e3fdcdfdea9664ad84b4 61 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 6 45 3.0E-12 T 10-10-2018 IPR008621 Cbb3-type cytochrome oxidase component VF_1153 a1fe6bc5ddd5d6d46011b7bc6d4c3682 139 Pfam PF07308 Protein of unknown function (DUF1456) 65 132 3.0E-23 T 10-10-2018 IPR009921 Domain of unknown function DUF1456 VF_1153 a1fe6bc5ddd5d6d46011b7bc6d4c3682 139 Pfam PF07308 Protein of unknown function (DUF1456) 1 50 1.7E-15 T 10-10-2018 IPR009921 Domain of unknown function DUF1456 VF_A1036 fb7e5a6d11b8d0eccf93a53c2425f313 395 SUPERFAMILY SSF53448 53 306 8.53E-31 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_A1036 fb7e5a6d11b8d0eccf93a53c2425f313 395 Gene3D G3DSA:3.90.550.10 38 271 8.1E-22 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_A1036 fb7e5a6d11b8d0eccf93a53c2425f313 395 Pfam PF13641 Glycosyltransferase like family 2 56 263 9.2E-11 T 10-10-2018 VF_A1112 469b0d02b5d6bb69814dd23f0cf13cac 195 Pfam PF01810 LysE type translocator 15 188 7.0E-18 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_1115 24601886b55edc1a3084ca0974d2ffe0 484 Pfam PF02378 Phosphotransferase system, EIIC 129 411 1.3E-30 T 10-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VF_1115 24601886b55edc1a3084ca0974d2ffe0 484 Gene3D G3DSA:3.30.1360.60 3 79 2.4E-20 T 10-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VF_1115 24601886b55edc1a3084ca0974d2ffe0 484 SUPERFAMILY SSF55604 8 81 7.85E-20 T 10-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VF_1115 24601886b55edc1a3084ca0974d2ffe0 484 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 10-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VF_1115 24601886b55edc1a3084ca0974d2ffe0 484 Pfam PF00367 phosphotransferase system, EIIB 10 43 1.5E-13 T 10-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VF_0694 8b50ba228d921ba81707329227c615b2 202 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 12 189 2.0E-34 T 10-10-2018 IPR003740 Uncharacterised membrane protein YitT VF_2233 0d74c3d71a82462b02cbc27b56edbbba 441 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 22 429 5.6E-107 T 10-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 VF_2233 0d74c3d71a82462b02cbc27b56edbbba 441 Gene3D G3DSA:1.20.1600.10 23 441 5.4E-117 T 10-10-2018 VF_2233 0d74c3d71a82462b02cbc27b56edbbba 441 SUPERFAMILY SSF56954 1 424 1.1E-88 T 10-10-2018 VF_2233 0d74c3d71a82462b02cbc27b56edbbba 441 Pfam PF02321 Outer membrane efflux protein 25 207 2.6E-26 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VF_2233 0d74c3d71a82462b02cbc27b56edbbba 441 Pfam PF02321 Outer membrane efflux protein 231 418 4.7E-32 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VF_2554 dfe02ff5fd5d82cd7ebea35c3734d43f 291 SMART SM00563 89 223 4.9E-16 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VF_2554 dfe02ff5fd5d82cd7ebea35c3734d43f 291 SUPERFAMILY SSF69593 16 281 1.26E-31 T 10-10-2018 VF_2554 dfe02ff5fd5d82cd7ebea35c3734d43f 291 Pfam PF01553 Acyltransferase 76 222 6.2E-14 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VF_A0073 d9537b109cbd40daa3efc9c2e47ac37a 491 SUPERFAMILY SSF103473 8 476 2.35E-22 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0073 d9537b109cbd40daa3efc9c2e47ac37a 491 Pfam PF07690 Major Facilitator Superfamily 10 275 3.3E-10 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_A0073 d9537b109cbd40daa3efc9c2e47ac37a 491 Gene3D G3DSA:1.20.1250.20 7 475 4.2E-64 T 10-10-2018 VF_1436 32d69cd26a00f90dc08d2892fa3df047 150 PIRSF PIRSF028777 1 138 1.4E-51 T 10-10-2018 IPR031308 Uncharacterised conserved protein UCP028777 VF_1436 32d69cd26a00f90dc08d2892fa3df047 150 Pfam PF03733 Inner membrane component domain 4 54 3.8E-15 T 10-10-2018 IPR005185 Inner membrane component domain VF_1436 32d69cd26a00f90dc08d2892fa3df047 150 Pfam PF03733 Inner membrane component domain 76 126 2.4E-18 T 10-10-2018 IPR005185 Inner membrane component domain VF_A0603 89b2e3b6a50e10f6bcd67b8699e55f9f 94 Pfam PF01541 GIY-YIG catalytic domain 8 77 4.5E-16 T 10-10-2018 IPR000305 GIY-YIG endonuclease VF_A0603 89b2e3b6a50e10f6bcd67b8699e55f9f 94 Gene3D G3DSA:3.40.1440.10 1 92 2.3E-30 T 10-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 VF_A0603 89b2e3b6a50e10f6bcd67b8699e55f9f 94 SUPERFAMILY SSF82771 7 78 6.28E-15 T 10-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 VF_1278 f0e1271fa269a68f43dfec234b1e4681 150 Pfam PF13185 GAF domain 42 136 6.1E-9 T 10-10-2018 IPR003018 GAF domain GO:0005515 VF_1278 f0e1271fa269a68f43dfec234b1e4681 150 Gene3D G3DSA:3.30.450.40 2 150 1.3E-61 T 10-10-2018 IPR029016 GAF-like domain superfamily VF_1278 f0e1271fa269a68f43dfec234b1e4681 150 SUPERFAMILY SSF55781 6 143 2.5E-39 T 10-10-2018 VF_1278 f0e1271fa269a68f43dfec234b1e4681 150 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 89 106 - T 10-10-2018 IPR000614 Free Met sulfoxide reductase conserved site VF_A0167 ba509e82a79c6a9a9a7f191b6ae3d41a 150 SUPERFAMILY SSF141322 88 148 2.22E-6 T 10-10-2018 VF_A0167 ba509e82a79c6a9a9a7f191b6ae3d41a 150 Gene3D G3DSA:2.40.50.140 80 150 3.6E-10 T 10-10-2018 VF_A0167 ba509e82a79c6a9a9a7f191b6ae3d41a 150 Pfam PF01957 NfeD-like C-terminal, partner-binding 11 148 1.9E-25 T 10-10-2018 IPR002810 NfeD-like, C-terminal domain VF_0077 bb7dea83e1e6025b5ecb93013a6c8b7a 213 Pfam PF13489 Methyltransferase domain 64 199 1.3E-21 T 10-10-2018 VF_0077 bb7dea83e1e6025b5ecb93013a6c8b7a 213 SUPERFAMILY SSF53335 46 200 6.86E-22 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_0077 bb7dea83e1e6025b5ecb93013a6c8b7a 213 Gene3D G3DSA:3.40.50.150 3 113 5.1E-10 T 10-10-2018 VF_0077 bb7dea83e1e6025b5ecb93013a6c8b7a 213 Gene3D G3DSA:3.40.50.150 114 207 2.5E-7 T 10-10-2018 VF_0437 094dae9f5d8f25bfb92f44ef5076b672 234 Pfam PF04231 Endonuclease I 37 231 1.6E-48 T 10-10-2018 IPR007346 Endonuclease I GO:0004518 VF_0437 094dae9f5d8f25bfb92f44ef5076b672 234 SUPERFAMILY SSF54060 23 232 9.3E-93 T 10-10-2018 VF_1612 553b52cd6440f46fed23b0771a5231ac 285 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 13 281 1.4E-97 T 10-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 VF_1612 553b52cd6440f46fed23b0771a5231ac 285 SUPERFAMILY SSF161098 19 272 5.63E-42 T 10-10-2018 IPR035906 MetI-like superfamily VF_1612 553b52cd6440f46fed23b0771a5231ac 285 Gene3D G3DSA:1.10.3720.10 59 284 2.3E-35 T 10-10-2018 IPR035906 MetI-like superfamily VF_1612 553b52cd6440f46fed23b0771a5231ac 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 282 9.8E-28 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_2113 812c8e22ef7b38b5f3aa9f924e7186af 224 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 4 212 3.1E-85 T 10-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VF_2113 812c8e22ef7b38b5f3aa9f924e7186af 224 Gene3D G3DSA:3.40.470.10 1 224 8.7E-101 T 10-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VF_2113 812c8e22ef7b38b5f3aa9f924e7186af 224 SUPERFAMILY SSF52141 4 218 8.5E-91 T 10-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VF_2113 812c8e22ef7b38b5f3aa9f924e7186af 224 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 2 219 40.08 T 10-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VF_2113 812c8e22ef7b38b5f3aa9f924e7186af 224 SMART SM00986 47 208 2.2E-43 T 10-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VF_2113 812c8e22ef7b38b5f3aa9f924e7186af 224 SMART SM00987 47 208 2.2E-43 T 10-10-2018 VF_2113 812c8e22ef7b38b5f3aa9f924e7186af 224 Pfam PF03167 Uracil DNA glycosylase superfamily 51 207 1.4E-24 T 10-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VF_2113 812c8e22ef7b38b5f3aa9f924e7186af 224 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 55 64 - T 10-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VF_1873 de39e8a6f5aa8c2a99a4cf00b58adaa1 249 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 121 1.9E-32 T 10-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VF_1873 de39e8a6f5aa8c2a99a4cf00b58adaa1 249 SUPERFAMILY SSF117143 77 207 1.96E-15 T 10-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VF_1873 de39e8a6f5aa8c2a99a4cf00b58adaa1 249 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 173 242 1.1E-23 T 10-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VF_1873 de39e8a6f5aa8c2a99a4cf00b58adaa1 249 Pfam PF00460 Flagella basal body rod protein 8 35 1.7E-5 T 10-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VF_1551 1bdba55d23d022587bb6e1dddd4da7cc 318 Pfam PF03916 Polysulphide reductase, NrfD 8 317 3.3E-81 T 10-10-2018 IPR005614 NrfD family VF_1551 1bdba55d23d022587bb6e1dddd4da7cc 318 TIGRFAM TIGR03148 cyt_nit_nrfD: cytochrome c nitrite reductase, NrfD subunit 7 318 6.0E-151 T 10-10-2018 IPR017566 NrfD VF_1551 1bdba55d23d022587bb6e1dddd4da7cc 318 Gene3D G3DSA:1.20.1630.10 7 216 5.1E-15 T 10-10-2018 VF_1757 c6e93155691338ecad6b1ee527836779 88 Pfam PF06305 Lipopolysaccharide assembly protein A domain 16 78 1.0E-17 T 10-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 VF_1757 c6e93155691338ecad6b1ee527836779 88 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 1 87 17.738 T 10-10-2018 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 VF_1898 68295ffd2055b5a4edcfd4b95f5fcc03 301 SUPERFAMILY SSF54909 4 297 3.58E-93 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel VF_1898 68295ffd2055b5a4edcfd4b95f5fcc03 301 Pfam PF04261 Dyp-type peroxidase family 43 294 1.8E-86 T 10-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 VF_1898 68295ffd2055b5a4edcfd4b95f5fcc03 301 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 6 293 1.6E-79 T 10-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 VF_0570 795d2006b085bbd2bdd7b205fe8d83cd 214 PIRSF PIRSF004525 14 214 2.0E-12 T 10-10-2018 IPR016419 Prepilin peptidase-dependent protein B, predicted VF_A0089 1f538aee1e38fdceec0185bb8af5dd5b 323 Gene3D G3DSA:3.40.50.1820 62 300 2.3E-17 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_A0089 1f538aee1e38fdceec0185bb8af5dd5b 323 Pfam PF07819 PGAP1-like protein 121 171 7.3E-6 T 10-10-2018 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 Reactome: R-HSA-162791 VF_A0089 1f538aee1e38fdceec0185bb8af5dd5b 323 SUPERFAMILY SSF53474 66 234 2.32E-17 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_2440 bff46f512f6789ee561c5075e9eac92a 443 TIGRFAM TIGR00797 matE: MATE efflux family protein 20 414 1.3E-78 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_2440 bff46f512f6789ee561c5075e9eac92a 443 Pfam PF01554 MatE 20 180 5.5E-28 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_2440 bff46f512f6789ee561c5075e9eac92a 443 Pfam PF01554 MatE 246 397 6.1E-13 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_B0042 5ba5086ebd6eb9ed98c5fa97885647ef 396 Gene3D G3DSA:2.40.128.260 332 396 2.2E-11 T 10-10-2018 VF_B0042 5ba5086ebd6eb9ed98c5fa97885647ef 396 Gene3D G3DSA:2.40.128.260 206 331 5.8E-44 T 10-10-2018 VF_B0042 5ba5086ebd6eb9ed98c5fa97885647ef 396 Pfam PF03743 Bacterial conjugation TrbI-like protein 214 387 2.6E-53 T 10-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI VF_1418 3e8a378b61a677d2eb759afafcb177d0 264 Pfam PF03781 Sulfatase-modifying factor enzyme 1 40 261 4.2E-47 T 10-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 VF_1418 3e8a378b61a677d2eb759afafcb177d0 264 Gene3D G3DSA:3.90.1580.10 32 262 1.0E-59 T 10-10-2018 VF_1418 3e8a378b61a677d2eb759afafcb177d0 264 SUPERFAMILY SSF56436 38 262 1.04E-57 T 10-10-2018 IPR016187 C-type lectin fold VF_1007 9aa96115730699160c8591646c9c792a 183 Gene3D G3DSA:1.20.1270.340 2 99 1.6E-13 T 10-10-2018 IPR038338 PriB/PriC superfamily VF_1007 9aa96115730699160c8591646c9c792a 183 Pfam PF07445 Primosomal replication protein priC 7 180 9.8E-53 T 10-10-2018 IPR010890 Primosomal replication PriB/PriC VF_2525 beff64c272cfaf44b494bf52ffeb965e 83 Pfam PF04380 Membrane fusogenic activity 1 78 4.9E-27 T 10-10-2018 IPR007475 Membrane fusogenic activity VF_1429 4d5e491ee8ac7ec4449241b07ca0d6ec 301 Gene3D G3DSA:1.10.10.60 202 301 3.5E-8 T 10-10-2018 VF_A0467 510ce858e59cd1e066c590a40bdca7d8 348 Pfam PF13437 HlyD family secretion protein 230 300 5.2E-6 T 10-10-2018 VF_A0467 510ce858e59cd1e066c590a40bdca7d8 348 Gene3D G3DSA:2.40.30.170 265 300 1.8E-14 T 10-10-2018 VF_A0467 510ce858e59cd1e066c590a40bdca7d8 348 Gene3D G3DSA:1.10.287.470 103 229 1.8E-14 T 10-10-2018 VF_A0467 510ce858e59cd1e066c590a40bdca7d8 348 Gene3D G3DSA:2.40.50.100 71 264 1.8E-14 T 10-10-2018 VF_1853 bbe4402040dd5430da7d414144fd1e7b 103 Pfam PF02049 Flagellar hook-basal body complex protein FliE 17 103 9.7E-27 T 10-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VF_1853 bbe4402040dd5430da7d414144fd1e7b 103 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 21 102 3.2E-17 T 10-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VF_1853 bbe4402040dd5430da7d414144fd1e7b 103 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 1 103 15.322 T 10-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VF_1853 bbe4402040dd5430da7d414144fd1e7b 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 32 48 1.4E-10 T 10-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VF_1853 bbe4402040dd5430da7d414144fd1e7b 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 67 83 1.4E-10 T 10-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VF_1853 bbe4402040dd5430da7d414144fd1e7b 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 88 101 1.4E-10 T 10-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VF_0840 6cf5ca510f72f13969a1114b1df6e813 198 Gene3D G3DSA:3.10.180.10 5 198 4.2E-68 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_0840 6cf5ca510f72f13969a1114b1df6e813 198 SUPERFAMILY SSF54593 7 197 1.97E-68 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VF_0840 6cf5ca510f72f13969a1114b1df6e813 198 Pfam PF06185 YecM protein 13 196 1.6E-67 T 10-10-2018 IPR010393 Protein of unknown function DUF991 VF_1120 0be312400534f369cd8b20e3ece37a74 200 SUPERFAMILY SSF55729 32 177 4.97E-28 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_1120 0be312400534f369cd8b20e3ece37a74 200 Pfam PF13527 Acetyltransferase (GNAT) domain 38 162 1.1E-12 T 10-10-2018 VF_1120 0be312400534f369cd8b20e3ece37a74 200 Gene3D G3DSA:3.40.630.30 27 199 4.9E-43 T 10-10-2018 VF_0447 bdcc6876da8c2ae2104c7ecc951e82f1 172 TIGRFAM TIGR01752 flav_long: flavodoxin 2 167 7.9E-67 T 10-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 VF_0447 bdcc6876da8c2ae2104c7ecc951e82f1 172 Pfam PF00258 Flavodoxin 5 160 4.5E-25 T 10-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 VF_0447 bdcc6876da8c2ae2104c7ecc951e82f1 172 PIRSF PIRSF038996 1 171 6.3E-57 T 10-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 VF_0447 bdcc6876da8c2ae2104c7ecc951e82f1 172 SUPERFAMILY SSF52218 1 165 2.67E-47 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_0447 bdcc6876da8c2ae2104c7ecc951e82f1 172 Gene3D G3DSA:3.40.50.360 1 172 3.1E-49 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_0868 369df07a287e377d59d0902fb70f0f76 167 Pfam PF14317 YcxB-like protein 100 158 8.0E-7 T 10-10-2018 IPR025588 YcxB-like protein VF_A0705 88113b4129f3555623bf04de7ec242ea 2147 SUPERFAMILY SSF52540 265 493 1.24E-7 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0647 b60f666443dbc3d723cd01b0f0515e3d 273 Pfam PF12358 Protein of unknown function (DUF3644) 2 61 1.1E-9 T 10-10-2018 IPR022104 Protein of unknown function DUF3644 VF_2427 81a3c63e66e9d4fbd850b28e67c87829 143 Gene3D G3DSA:3.40.630.30 4 139 1.7E-8 T 10-10-2018 VF_2427 81a3c63e66e9d4fbd850b28e67c87829 143 SUPERFAMILY SSF55729 14 114 4.45E-9 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_0378 fe569204476a6bcd92c1eed82ba86838 272 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 150 170 - T 10-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site VF_0378 fe569204476a6bcd92c1eed82ba86838 272 Gene3D G3DSA:3.60.110.10 1 271 1.3E-89 T 10-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VF_0378 fe569204476a6bcd92c1eed82ba86838 272 Pfam PF00795 Carbon-nitrogen hydrolase 3 257 1.2E-57 T 10-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 VF_0378 fe569204476a6bcd92c1eed82ba86838 272 SUPERFAMILY SSF56317 3 264 6.67E-79 T 10-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VF_2224 a3723aafe68718081f7f84678be85440 151 PIRSF PIRSF006318 1 142 3.0E-54 T 10-10-2018 IPR009386 Protein of unknown function DUF1043 VF_2224 a3723aafe68718081f7f84678be85440 151 Pfam PF06295 Protein of unknown function (DUF1043) 6 135 1.9E-42 T 10-10-2018 IPR009386 Protein of unknown function DUF1043 VF_A0848 5508153f20bf7233992604761eb29008 395 Pfam PF11449 Putative, 10TM heavy-metal exporter 38 393 1.1E-159 T 10-10-2018 IPR021552 Putative, 10TM heavy-metal exporter VF_0417 1332d660bafe41b6ca55991a4ed4e04b 85 Pfam PF11212 Protein of unknown function (DUF2999) 1 82 2.5E-48 T 10-10-2018 IPR021376 Protein of unknown function DUF2999 VF_A0507 ac76145ff20e355f44a6fa3274997939 407 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 10 406 1.5E-132 T 10-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VF_A0507 ac76145ff20e355f44a6fa3274997939 407 Pfam PF03616 Sodium/glutamate symporter 6 375 1.9E-146 T 10-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VF_A0507 ac76145ff20e355f44a6fa3274997939 407 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 5 406 23.648 T 10-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VF_A0114 25e561f9becd9825417c31fb3aa111dc 389 SUPERFAMILY SSF46955 2 102 8.06E-22 T 10-10-2018 IPR009061 Putative DNA-binding domain superfamily VF_A0114 25e561f9becd9825417c31fb3aa111dc 389 Gene3D G3DSA:3.40.50.150 141 388 5.8E-54 T 10-10-2018 VF_A0114 25e561f9becd9825417c31fb3aa111dc 389 Pfam PF13411 MerR HTH family regulatory protein 2 69 8.4E-16 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_A0114 25e561f9becd9825417c31fb3aa111dc 389 Pfam PF13649 Methyltransferase domain 188 281 2.3E-14 T 10-10-2018 VF_A0114 25e561f9becd9825417c31fb3aa111dc 389 SMART SM00422 2 70 2.6E-19 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_A0114 25e561f9becd9825417c31fb3aa111dc 389 Gene3D G3DSA:1.10.1660.10 1 111 3.3E-22 T 10-10-2018 VF_A0114 25e561f9becd9825417c31fb3aa111dc 389 SUPERFAMILY SSF53335 131 386 1.22E-37 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_A0362 de9a2c92d612334c08a68ef556c80141 110 Gene3D G3DSA:2.40.50.140 1 110 1.0E-37 T 10-10-2018 VF_A0362 de9a2c92d612334c08a68ef556c80141 110 Pfam PF01588 Putative tRNA binding domain 14 107 2.1E-30 T 10-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 VF_A0362 de9a2c92d612334c08a68ef556c80141 110 SUPERFAMILY SSF50249 8 109 1.4E-31 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold VF_2327 a0232a83034d29e99532cd833c094f73 154 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 10 139 7.6E-50 T 10-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 VF_2327 a0232a83034d29e99532cd833c094f73 154 Gene3D G3DSA:3.40.50.300 1 152 6.7E-48 T 10-10-2018 VF_2327 a0232a83034d29e99532cd833c094f73 154 SUPERFAMILY SSF52540 5 132 2.89E-24 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2327 a0232a83034d29e99532cd833c094f73 154 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 133 1.1E-42 T 10-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 VF_1916 26ce7682d77df32c4642d7582316d7db 69 Pfam PF11446 Protein of unknown function (DUF2897) 3 54 1.9E-23 T 10-10-2018 IPR021550 Protein of unknown function DUF2897 VF_0172 fccee40adb019acb3ba465d239e7d571 210 SUPERFAMILY SSF51161 38 203 4.44E-30 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily VF_0172 fccee40adb019acb3ba465d239e7d571 210 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 147 181 5.5E-9 T 10-10-2018 IPR001451 Hexapeptide repeat VF_0172 fccee40adb019acb3ba465d239e7d571 210 Gene3D G3DSA:2.160.10.10 32 199 6.1E-32 T 10-10-2018 VF_A1134 d820f6feaed1c322df683e7a57548af0 102 Pfam PF11747 Killing trait 23 89 2.2E-28 T 10-10-2018 IPR021070 Killing trait, RebB VF_A0174 dd6631322c50a89f34352ec9c6713f92 174 Pfam PF11286 Protein of unknown function (DUF3087) 1 171 6.1E-61 T 10-10-2018 IPR021438 Protein of unknown function DUF3087 VF_1697 b7bd28133db839464c215ee7eb51f2f2 1373 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 1329 1372 4.2E-15 T 10-10-2018 IPR020011 Motility protein FimV, C-terminal VF_1697 b7bd28133db839464c215ee7eb51f2f2 1373 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 83 155 3.1E-27 T 10-10-2018 IPR020012 Motility protein FimV, N-terminal VF_A0767 56443da4fd1854bbbc50979c297b001f 108 SUPERFAMILY SSF46626 32 102 2.18E-15 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_A0767 56443da4fd1854bbbc50979c297b001f 108 Gene3D G3DSA:1.10.760.10 21 105 4.1E-18 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_A0767 56443da4fd1854bbbc50979c297b001f 108 Pfam PF00034 Cytochrome c 33 98 2.1E-5 T 10-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VF_1464 d552e5e4143bcca857b71e62237f1058 465 Pfam PF00580 UvrD/REP helicase N-terminal domain 190 279 2.0E-16 T 10-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 VF_1464 d552e5e4143bcca857b71e62237f1058 465 SUPERFAMILY SSF52540 189 381 5.04E-23 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1464 d552e5e4143bcca857b71e62237f1058 465 Gene3D G3DSA:3.40.91.30 355 427 3.7E-6 T 10-10-2018 IPR011578 T7 endonuclease I-like GO:0003677|GO:0004536 VF_1464 d552e5e4143bcca857b71e62237f1058 465 Gene3D G3DSA:3.40.50.300 182 334 3.9E-24 T 10-10-2018 VF_0047 7b246bce706d518cd45cce8a8cb4c29d 207 SUPERFAMILY SSF55718 15 118 2.33E-7 T 10-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VF_0047 7b246bce706d518cd45cce8a8cb4c29d 207 Pfam PF02036 SCP-2 sterol transfer family 15 113 2.6E-21 T 10-10-2018 IPR003033 SCP2 sterol-binding domain VF_A0777 0c21738986888051bb0f8e660f3250f9 134 Gene3D G3DSA:3.30.420.270 61 129 8.2E-12 T 10-10-2018 VF_A0777 0c21738986888051bb0f8e660f3250f9 134 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 132 2.7E-28 T 10-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 VF_0227 f21ebc557d6a1e05dbd417c2adb7c622 234 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 22 137 7.0E-63 T 10-10-2018 IPR013559 YheO-like VF_0227 f21ebc557d6a1e05dbd417c2adb7c622 234 Pfam PF08348 YheO-like PAS domain 25 133 6.3E-36 T 10-10-2018 IPR013559 YheO-like VF_0227 f21ebc557d6a1e05dbd417c2adb7c622 234 Pfam PF13309 HTH domain 168 225 1.2E-17 T 10-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain VF_0329 4d44c066fab876720fd7a6da78eeabe6 183 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 24 181 3.0E-75 T 10-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ VF_0329 4d44c066fab876720fd7a6da78eeabe6 183 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 1 182 1.3E-78 T 10-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ VF_0329 4d44c066fab876720fd7a6da78eeabe6 183 Gene3D G3DSA:3.40.30.10 20 180 1.3E-5 T 10-10-2018 VF_1507 83c3065897f11d1a983f7c613c7b33a2 116 Pfam PF11042 Protein of unknown function (DUF2750) 13 113 1.9E-31 T 10-10-2018 IPR021284 Protein of unknown function DUF2750 VF_2446 85bbfef3e67d322c616650380afced34 136 Pfam PF03748 Flagellar basal body-associated protein FliL 34 136 5.3E-17 T 10-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 VF_0085 04f78e6aa263ffa4ea0945c388dd6bea 117 Pfam PF10625 Universal stress protein B (UspB) 6 112 7.8E-49 T 10-10-2018 IPR019598 Universal stress protein B VF_A1053 f96b54e5c0913622b959d1dac02f366d 173 Gene3D G3DSA:1.10.1660.10 1 153 4.0E-25 T 10-10-2018 VF_A1053 f96b54e5c0913622b959d1dac02f366d 173 SMART SM00422 2 71 9.9E-10 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_A1053 f96b54e5c0913622b959d1dac02f366d 173 Pfam PF13411 MerR HTH family regulatory protein 3 69 6.1E-11 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VF_A1053 f96b54e5c0913622b959d1dac02f366d 173 SUPERFAMILY SSF46955 2 106 5.49E-23 T 10-10-2018 IPR009061 Putative DNA-binding domain superfamily VF_1373 33df0651d4f356042108e3e3c9fb0baf 414 Pfam PF01566 Natural resistance-associated macrophage protein 59 385 2.0E-23 T 10-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 VF_A0676 1ac5f2fd8bca7bfa0ac5eead35b42699 216 SUPERFAMILY SSF47413 6 71 6.38E-6 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_A0676 1ac5f2fd8bca7bfa0ac5eead35b42699 216 Gene3D G3DSA:1.10.260.40 5 73 9.3E-8 T 10-10-2018 VF_2616 e14055b58e3db697d57811d16798e3b9 267 Pfam PF04116 Fatty acid hydroxylase superfamily 93 229 7.4E-27 T 10-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 VF_0496 06182e3cfa8ecf83cd8e9bc22294135b 167 Gene3D G3DSA:3.40.630.30 1 166 4.9E-46 T 10-10-2018 VF_0496 06182e3cfa8ecf83cd8e9bc22294135b 167 SUPERFAMILY SSF55729 1 132 2.16E-26 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_0496 06182e3cfa8ecf83cd8e9bc22294135b 167 Pfam PF13527 Acetyltransferase (GNAT) domain 3 124 2.9E-10 T 10-10-2018 VF_A0037 477cf9b298a99dd987cf58a69b0210cf 470 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 246 366 4.8E-16 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VF_A0037 477cf9b298a99dd987cf58a69b0210cf 470 SUPERFAMILY SSF52540 21 367 2.57E-13 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1447 b32d7aa0f4f61fc944813afe3c970a88 292 Gene3D G3DSA:3.40.50.2300 31 278 5.0E-96 T 10-10-2018 VF_1447 b32d7aa0f4f61fc944813afe3c970a88 292 Pfam PF13407 Periplasmic binding protein domain 28 278 3.8E-61 T 10-10-2018 IPR025997 Periplasmic binding protein VF_1447 b32d7aa0f4f61fc944813afe3c970a88 292 SUPERFAMILY SSF53822 9 292 5.68E-87 T 10-10-2018 IPR028082 Periplasmic binding protein-like I VF_1447 b32d7aa0f4f61fc944813afe3c970a88 292 Gene3D G3DSA:3.40.50.2300 125 259 5.0E-96 T 10-10-2018 VF_A1035 c61d158b5beb2164d32ce3aa554d8c86 362 Pfam PF13439 Glycosyltransferase Family 4 14 169 1.3E-13 T 10-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 VF_A1035 c61d158b5beb2164d32ce3aa554d8c86 362 SUPERFAMILY SSF53756 4 357 2.16E-64 T 10-10-2018 VF_A1035 c61d158b5beb2164d32ce3aa554d8c86 362 Pfam PF00534 Glycosyl transferases group 1 190 330 3.3E-32 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 VF_A1035 c61d158b5beb2164d32ce3aa554d8c86 362 Gene3D G3DSA:3.40.50.2000 168 343 2.0E-62 T 10-10-2018 VF_A1035 c61d158b5beb2164d32ce3aa554d8c86 362 Gene3D G3DSA:3.40.50.2000 26 356 2.0E-62 T 10-10-2018 VF_0774 cdfda6f8cd7e9cd9165a61be0d0d7663 269 Gene3D G3DSA:1.20.1080.10 1 250 3.3E-65 T 10-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VF_0774 cdfda6f8cd7e9cd9165a61be0d0d7663 269 Pfam PF01226 Formate/nitrite transporter 8 257 1.8E-61 T 10-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 VF_0392 55d61d9e81e8ccccf20b4aa06bbb7c3d 324 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 46 314 1.6E-110 T 10-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 VF_0392 55d61d9e81e8ccccf20b4aa06bbb7c3d 324 Pfam PF00571 CBS domain 202 258 1.5E-5 T 10-10-2018 IPR000644 CBS domain VF_0392 55d61d9e81e8ccccf20b4aa06bbb7c3d 324 Pfam PF00571 CBS domain 268 321 1.2E-5 T 10-10-2018 IPR000644 CBS domain VF_0392 55d61d9e81e8ccccf20b4aa06bbb7c3d 324 SUPERFAMILY SSF53697 11 321 8.01E-72 T 10-10-2018 VF_0392 55d61d9e81e8ccccf20b4aa06bbb7c3d 324 SMART SM00116 210 258 0.014 T 10-10-2018 IPR000644 CBS domain VF_0392 55d61d9e81e8ccccf20b4aa06bbb7c3d 324 SMART SM00116 275 323 2.7 T 10-10-2018 IPR000644 CBS domain VF_0392 55d61d9e81e8ccccf20b4aa06bbb7c3d 324 Gene3D G3DSA:3.40.50.10490 4 195 1.5E-64 T 10-10-2018 VF_0392 55d61d9e81e8ccccf20b4aa06bbb7c3d 324 Pfam PF01380 SIS domain 40 172 1.2E-32 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VF_0392 55d61d9e81e8ccccf20b4aa06bbb7c3d 324 PIRSF PIRSF004692 1 324 4.6E-130 T 10-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 VF_0392 55d61d9e81e8ccccf20b4aa06bbb7c3d 324 Gene3D G3DSA:3.10.580.10 196 321 3.6E-41 T 10-10-2018 VF_2151 c972b435548bbbdfefac926c23435485 337 Pfam PF13343 Bacterial extracellular solute-binding protein 72 298 9.2E-18 T 10-10-2018 VF_2151 c972b435548bbbdfefac926c23435485 337 SUPERFAMILY SSF53850 24 332 1.0E-75 T 10-10-2018 VF_2151 c972b435548bbbdfefac926c23435485 337 PIRSF PIRSF002825 4 337 2.1E-97 T 10-10-2018 IPR026045 Ferric binding protein VF_2151 c972b435548bbbdfefac926c23435485 337 Gene3D G3DSA:3.40.190.10 120 328 2.0E-125 T 10-10-2018 VF_2151 c972b435548bbbdfefac926c23435485 337 Gene3D G3DSA:3.40.190.10 25 297 2.0E-125 T 10-10-2018 VF_1119 c17ab9d9db90a40fde01ad2368551e9c 237 Pfam PF01925 Sulfite exporter TauE/SafE 9 229 5.7E-29 T 10-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 VF_A0297 fe176a326f8140fdc53ac2a5bd6902f0 58 Pfam PF06796 Periplasmic nitrate reductase protein NapE 4 56 1.5E-26 T 10-10-2018 IPR010649 Nitrate/trimethylamine N-oxide reductase NapE/TorE VF_A0297 fe176a326f8140fdc53ac2a5bd6902f0 58 TIGRFAM TIGR02972 TMAO_torE: trimethylamine N-oxide reductase system, TorE protein 8 56 4.9E-32 T 10-10-2018 IPR014316 Trimethylamine N-oxide reductase system, TorE VF_1648 9ca376c234f1e3ab7d8a5a54218e5cd8 352 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 17 346 45.354 T 10-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 VF_1648 9ca376c234f1e3ab7d8a5a54218e5cd8 352 Pfam PF04245 37-kD nucleoid-associated bacterial protein 23 340 7.8E-104 T 10-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 VF_A0454 2ca501daa147f9c1331bd4b9eb821aeb 233 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 4 231 3.3E-89 T 10-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 VF_A0454 2ca501daa147f9c1331bd4b9eb821aeb 233 SUPERFAMILY SSF46785 3 72 1.32E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_A0454 2ca501daa147f9c1331bd4b9eb821aeb 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 6.5E-8 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_A0454 2ca501daa147f9c1331bd4b9eb821aeb 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 6.5E-8 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_A0454 2ca501daa147f9c1331bd4b9eb821aeb 233 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 68 5.3E-16 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_A0454 2ca501daa147f9c1331bd4b9eb821aeb 233 Pfam PF07702 UTRA domain 89 226 5.7E-33 T 10-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 VF_A0454 2ca501daa147f9c1331bd4b9eb821aeb 233 SMART SM00345 9 68 4.3E-17 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VF_A0454 2ca501daa147f9c1331bd4b9eb821aeb 233 Gene3D G3DSA:1.10.10.10 1 69 2.0E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_A0454 2ca501daa147f9c1331bd4b9eb821aeb 233 SMART SM00866 89 226 5.8E-33 T 10-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 VF_A0454 2ca501daa147f9c1331bd4b9eb821aeb 233 SUPERFAMILY SSF64288 56 230 1.88E-39 T 10-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VF_A0454 2ca501daa147f9c1331bd4b9eb821aeb 233 Gene3D G3DSA:3.40.1410.10 87 222 5.2E-31 T 10-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VF_0131 c7b1078cf23313ec11d59fd3a3f1a579 659 SUPERFAMILY SSF53649 280 594 6.54E-24 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_0131 c7b1078cf23313ec11d59fd3a3f1a579 659 Gene3D G3DSA:3.40.720.10 276 579 1.0E-34 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VF_0131 c7b1078cf23313ec11d59fd3a3f1a579 659 Pfam PF00884 Sulfatase 281 570 1.3E-19 T 10-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VF_0049 8c96ae342bfca912de50fe80d6e0d074 82 Pfam PF02416 mttA/Hcf106 family 4 54 8.3E-14 T 10-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 VF_0049 8c96ae342bfca912de50fe80d6e0d074 82 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 80 24.196 T 10-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 VF_0049 8c96ae342bfca912de50fe80d6e0d074 82 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 47 2.7E-21 T 10-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 VF_2618 3ae541d9345efbb21f20af8fadf1871e 91 Pfam PF03206 Nitrogen fixation protein NifW 10 70 2.4E-5 T 10-10-2018 IPR004893 Nitrogen fixation protein NifW GO:0009399 VF_2269 fe5746f7cb663c77e826ce2a01fde981 634 Gene3D G3DSA:3.20.20.80 140 376 2.4E-31 T 10-10-2018 VF_2269 fe5746f7cb663c77e826ce2a01fde981 634 SUPERFAMILY SSF51011 415 484 9.6E-8 T 10-10-2018 VF_2269 fe5746f7cb663c77e826ce2a01fde981 634 SMART SM00642 12 398 1.1E-31 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_2269 fe5746f7cb663c77e826ce2a01fde981 634 Gene3D G3DSA:3.20.20.80 3 131 3.1E-39 T 10-10-2018 VF_2269 fe5746f7cb663c77e826ce2a01fde981 634 SUPERFAMILY SSF51445 5 407 3.25E-72 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily VF_2269 fe5746f7cb663c77e826ce2a01fde981 634 Pfam PF00128 Alpha amylase, catalytic domain 38 124 7.2E-28 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_2269 fe5746f7cb663c77e826ce2a01fde981 634 Pfam PF00128 Alpha amylase, catalytic domain 155 341 7.4E-15 T 10-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VF_2269 fe5746f7cb663c77e826ce2a01fde981 634 Gene3D G3DSA:2.60.40.1180 401 485 1.1E-6 T 10-10-2018 IPR013780 Glycosyl hydrolase, all-beta VF_A0229 6670cc1687e8166ed3b037a40578d233 423 SUPERFAMILY SSF53300 157 417 3.45E-13 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_A0229 6670cc1687e8166ed3b037a40578d233 423 Gene3D G3DSA:3.40.50.410 154 419 1.1E-13 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_A0127 625e2e93a066bd31cb009354c4e05dfb 161 SUPERFAMILY SSF101904 16 131 1.12E-5 T 10-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VF_2053 cfe0f050b0de59da48dc1c1585b984a8 349 SUPERFAMILY SSF53474 26 241 1.92E-6 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_A0126 bb122a84246062ae0de64a6418155e4e 235 Gene3D G3DSA:1.10.340.30 37 190 1.8E-14 T 10-10-2018 VF_A0126 bb122a84246062ae0de64a6418155e4e 235 Pfam PF03352 Methyladenine glycosylase 51 146 9.1E-12 T 10-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 VF_A0126 bb122a84246062ae0de64a6418155e4e 235 SUPERFAMILY SSF48150 39 185 3.45E-38 T 10-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 VF_0779 10177e7753945c86d29884aeef47fc93 194 SUPERFAMILY SSF160443 94 176 2.88E-13 T 10-10-2018 IPR036063 Smr domain superfamily VF_0779 10177e7753945c86d29884aeef47fc93 194 Gene3D G3DSA:3.30.1370.110 40 182 3.3E-41 T 10-10-2018 VF_0779 10177e7753945c86d29884aeef47fc93 194 SMART SM00463 93 176 1.9E-13 T 10-10-2018 IPR002625 Smr domain VF_0779 10177e7753945c86d29884aeef47fc93 194 Pfam PF01713 Smr domain 96 176 3.2E-19 T 10-10-2018 IPR002625 Smr domain VF_0846 8a5fcb369780ead090fd4a49e71fca25 98 SUPERFAMILY SSF47336 18 96 1.31E-12 T 10-10-2018 IPR036736 ACP-like superfamily VF_0846 8a5fcb369780ead090fd4a49e71fca25 98 Pfam PF00550 Phosphopantetheine attachment site 20 93 3.9E-9 T 10-10-2018 IPR009081 Phosphopantetheine binding ACP domain VF_0846 8a5fcb369780ead090fd4a49e71fca25 98 Gene3D G3DSA:1.10.1200.10 17 98 6.4E-20 T 10-10-2018 IPR036736 ACP-like superfamily VF_1223 2ccfbf882ae3629c6e5435903b701738 139 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 134 5.2E-19 T 10-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 VF_A1097 f2f12c738133439dd063e3665af89e78 605 SUPERFAMILY SSF50985 318 596 4.84E-32 T 10-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II VF_A1097 f2f12c738133439dd063e3665af89e78 605 Gene3D G3DSA:2.130.10.30 320 562 8.6E-21 T 10-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II VF_0042 2e378440f68c6781132a82c19fda5e52 96 Gene3D G3DSA:1.10.287.1050 25 95 2.4E-5 T 10-10-2018 IPR027454 Histone-like protein H-NS, N-terminal GO:0046983 VF_0042 2e378440f68c6781132a82c19fda5e52 96 SUPERFAMILY SSF81273 38 79 3.73E-5 T 10-10-2018 VF_2659 7ac587f63415640b37ae5d3d89b19809 234 Pfam PF04340 Protein of unknown function, DUF484 12 229 3.0E-53 T 10-10-2018 IPR007435 Protein of unknown function DUF484 VF_2659 7ac587f63415640b37ae5d3d89b19809 234 Gene3D G3DSA:3.30.450.40 49 231 1.1E-31 T 10-10-2018 IPR029016 GAF-like domain superfamily VF_1724 c5ce7e11260a73eee0d8f8a2a2a19330 456 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 56 441 7.8E-140 T 10-10-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 VF_1724 c5ce7e11260a73eee0d8f8a2a2a19330 456 Pfam PF03606 C4-dicarboxylate anaerobic carrier 2 451 1.9E-123 T 10-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 VF_A0428 e93c1c7a37f4aa0e8c1200bb4b0871c1 287 Pfam PF02698 DUF218 domain 81 239 2.7E-25 T 10-10-2018 IPR003848 Domain of unknown function DUF218 VF_A0757 6fe9e8d2ca0124981c2964f5d07b4e09 172 Pfam PF12915 Protein of unknown function (DUF3833) 11 172 1.4E-65 T 10-10-2018 IPR024409 Protein of unknown function DUF3833 VF_0955 3cd22e08fd674eb53e4dbf06352a574e 35 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 30 1.1E-20 T 10-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 VF_0955 3cd22e08fd674eb53e4dbf06352a574e 35 Pfam PF08173 Membrane bound YbgT-like protein 1 27 1.3E-17 T 10-10-2018 IPR012994 Membrane bound YbgT-like VF_2396 54fb92a5522346d52f1dffcbdb6aff10 234 Pfam PF07356 Protein of unknown function (DUF1481) 33 230 9.5E-55 T 10-10-2018 IPR010858 Protein of unknown function DUF1481 VF_2396 54fb92a5522346d52f1dffcbdb6aff10 234 PIRSF PIRSF028160 1 234 2.0E-77 T 10-10-2018 IPR016872 Uncharacterised conserved protein UCP028160 VF_0396 ec2c7e1b3b0afeaf8724dc89a5940079 164 Pfam PF02470 MlaD protein 40 118 1.6E-20 T 10-10-2018 IPR003399 Mce/MlaD VF_0396 ec2c7e1b3b0afeaf8724dc89a5940079 164 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 4 152 6.7E-54 T 10-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 VF_0400 d840c0bb2ab5cae3dc7289137b8eebe4 85 Gene3D G3DSA:3.30.300.90 1 85 1.7E-33 T 10-10-2018 VF_0400 d840c0bb2ab5cae3dc7289137b8eebe4 85 SUPERFAMILY SSF82657 3 82 3.14E-28 T 10-10-2018 IPR036065 BolA-like superfamily VF_0400 d840c0bb2ab5cae3dc7289137b8eebe4 85 Pfam PF01722 BolA-like protein 20 74 1.8E-14 T 10-10-2018 IPR002634 BolA protein VF_0400 d840c0bb2ab5cae3dc7289137b8eebe4 85 PIRSF PIRSF003113 1 84 3.5E-22 T 10-10-2018 IPR002634 BolA protein VF_A0569 34f17641d1c58c38dd5371a9f9572661 186 Pfam PF05036 Sporulation related domain 96 169 1.7E-14 T 10-10-2018 IPR007730 Sporulation-like domain GO:0042834 VF_A0569 34f17641d1c58c38dd5371a9f9572661 186 SUPERFAMILY SSF110997 96 160 2.75E-5 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VF_A0569 34f17641d1c58c38dd5371a9f9572661 186 Gene3D G3DSA:3.30.70.1070 86 177 1.2E-23 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VF_2517 52d55c0e8d89fa2a82820d64eb720270 325 SUPERFAMILY SSF161098 90 302 6.8E-15 T 10-10-2018 IPR035906 MetI-like superfamily VF_2517 52d55c0e8d89fa2a82820d64eb720270 325 Gene3D G3DSA:1.10.3720.10 83 314 4.8E-18 T 10-10-2018 IPR035906 MetI-like superfamily VF_2517 52d55c0e8d89fa2a82820d64eb720270 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 318 1.1E-38 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_0177 69e89c3d548c7e2f171b55ecff8d6f99 187 Pfam PF08282 haloacid dehalogenase-like hydrolase 78 142 1.0E-7 T 10-10-2018 VF_0177 69e89c3d548c7e2f171b55ecff8d6f99 187 SUPERFAMILY SSF56784 8 159 4.2E-37 T 10-10-2018 IPR036412 HAD-like superfamily VF_0177 69e89c3d548c7e2f171b55ecff8d6f99 187 Gene3D G3DSA:3.40.50.1000 4 177 2.6E-49 T 10-10-2018 IPR023214 HAD superfamily VF_0177 69e89c3d548c7e2f171b55ecff8d6f99 187 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 10 161 1.5E-48 T 10-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VF_0177 69e89c3d548c7e2f171b55ecff8d6f99 187 PIRSF PIRSF006118 3 171 8.9E-56 T 10-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VF_A0257 60c56f119c1df841fc592600294762f7 203 SUPERFAMILY SSF51645 21 199 7.06E-17 T 10-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 VF_A0257 60c56f119c1df841fc592600294762f7 203 Gene3D G3DSA:2.170.170.11 30 149 6.5E-26 T 10-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 VF_1682 78e7afce18aa00cdbdd398d3f78e72d0 448 Pfam PF13286 Phosphohydrolase-associated domain 352 442 1.1E-26 T 10-10-2018 IPR026875 Phosphohydrolase-associated domain VF_1682 78e7afce18aa00cdbdd398d3f78e72d0 448 SMART SM00471 63 269 3.5E-9 T 10-10-2018 IPR003607 HD/PDEase domain VF_1682 78e7afce18aa00cdbdd398d3f78e72d0 448 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 29 445 1.3E-118 T 10-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 VF_1682 78e7afce18aa00cdbdd398d3f78e72d0 448 Pfam PF01966 HD domain 67 145 2.9E-7 T 10-10-2018 IPR006674 HD domain VF_1682 78e7afce18aa00cdbdd398d3f78e72d0 448 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 3 445 36.23 T 10-10-2018 IPR023023 dNTP triphosphohydrolase, type 2 GO:0016793 VF_1682 78e7afce18aa00cdbdd398d3f78e72d0 448 SUPERFAMILY SSF109604 27 447 3.41E-78 T 10-10-2018 VF_1682 78e7afce18aa00cdbdd398d3f78e72d0 448 Gene3D G3DSA:1.10.3210.10 2 446 2.6E-103 T 10-10-2018 VF_A1096 87aff5e6f1ac317e8894f0ac46f07cf7 706 SUPERFAMILY SSF50985 49 320 4.32E-21 T 10-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II VF_A1096 87aff5e6f1ac317e8894f0ac46f07cf7 706 Gene3D G3DSA:2.130.10.30 163 356 1.6E-11 T 10-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II VF_2025 6098228f99cb56660ff93ab3cda0d9bc 169 Pfam PF06890 Bacteriophage Mu Gp45 protein 19 127 2.4E-21 T 10-10-2018 IPR014462 Phage-associated protein Gp45 VF_B0054 edac4829f7ac2d9c3d2e5d67b85ec811 246 Gene3D G3DSA:1.20.58.430 37 226 4.7E-54 T 10-10-2018 IPR023220 Type IV secretion system, VirB5-domain VF_B0054 edac4829f7ac2d9c3d2e5d67b85ec811 246 SUPERFAMILY SSF101082 53 226 1.03E-46 T 10-10-2018 VF_B0054 edac4829f7ac2d9c3d2e5d67b85ec811 246 TIGRFAM TIGR02791 VirB5: P-type DNA transfer protein VirB5 7 226 4.4E-49 T 10-10-2018 IPR014158 Type IV secretion system, VirB5 VF_B0054 edac4829f7ac2d9c3d2e5d67b85ec811 246 Pfam PF07996 Type IV secretion system proteins 41 225 1.0E-50 T 10-10-2018 IPR014158 Type IV secretion system, VirB5 VF_1376 b28e71032c92a7893ff6ff447f14851a 247 Pfam PF03746 LamB/YcsF family 2 242 5.0E-93 T 10-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 VF_1376 b28e71032c92a7893ff6ff447f14851a 247 SUPERFAMILY SSF88713 1 243 8.15E-90 T 10-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 VF_1376 b28e71032c92a7893ff6ff447f14851a 247 Gene3D G3DSA:3.20.20.370 1 247 2.9E-96 T 10-10-2018 VF_A0986 6b5a4668705c33056365c51d8b2b2371 193 Pfam PF01965 DJ-1/PfpI family 8 171 1.6E-30 T 10-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 VF_A0986 6b5a4668705c33056365c51d8b2b2371 193 SUPERFAMILY SSF52317 8 174 6.7E-36 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_A0986 6b5a4668705c33056365c51d8b2b2371 193 Gene3D G3DSA:3.40.50.880 5 189 4.5E-38 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like VF_1768 fd40b9d24becf001f00205e7c9ee5a99 180 Pfam PF13590 Domain of unknown function (DUF4136) 45 173 5.5E-7 T 10-10-2018 IPR025411 Domain of unknown function DUF4136 VF_A0059 dc44a9763df119c59fb3dbd5d3f6ed35 727 Pfam PF07715 TonB-dependent Receptor Plug Domain 58 167 2.8E-16 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain VF_A0059 dc44a9763df119c59fb3dbd5d3f6ed35 727 Gene3D G3DSA:2.40.170.20 181 726 2.3E-34 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VF_A0059 dc44a9763df119c59fb3dbd5d3f6ed35 727 Gene3D G3DSA:2.170.130.10 37 179 4.9E-29 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VF_A0059 dc44a9763df119c59fb3dbd5d3f6ed35 727 SUPERFAMILY SSF56935 48 726 3.14E-78 T 10-10-2018 VF_1532 7437710fc4e26bcb697252b8f54e726d 342 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 257 2.2E-29 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_1532 7437710fc4e26bcb697252b8f54e726d 342 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 61 74 - T 10-10-2018 IPR018313 Solute-binding protein family 3, conserved site VF_1532 7437710fc4e26bcb697252b8f54e726d 342 SUPERFAMILY SSF53850 29 258 8.78E-48 T 10-10-2018 VF_1532 7437710fc4e26bcb697252b8f54e726d 342 SMART SM00062 38 267 2.9E-54 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VF_1532 7437710fc4e26bcb697252b8f54e726d 342 Gene3D G3DSA:3.40.190.10 125 230 2.0E-50 T 10-10-2018 VF_1532 7437710fc4e26bcb697252b8f54e726d 342 Gene3D G3DSA:3.40.190.10 33 243 2.0E-50 T 10-10-2018 VF_A0184 9318afc9bc1049b26619ac02b9217d05 180 SMART SM00028 101 134 400.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0184 9318afc9bc1049b26619ac02b9217d05 180 SMART SM00028 135 168 7.5E-5 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VF_A0184 9318afc9bc1049b26619ac02b9217d05 180 SUPERFAMILY SSF48452 108 171 3.8E-10 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0184 9318afc9bc1049b26619ac02b9217d05 180 Gene3D G3DSA:1.25.40.10 48 178 3.4E-10 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_0942 36cd73d7472d57defcd7d2d6379faaac 81 Pfam PF02597 ThiS family 4 81 6.1E-19 T 10-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 VF_0942 36cd73d7472d57defcd7d2d6379faaac 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 81 2.9E-21 T 10-10-2018 VF_0942 36cd73d7472d57defcd7d2d6379faaac 81 Gene3D G3DSA:3.10.20.30 1 81 1.2E-24 T 10-10-2018 IPR012675 Beta-grasp domain superfamily VF_0942 36cd73d7472d57defcd7d2d6379faaac 81 SUPERFAMILY SSF54285 1 81 2.62E-21 T 10-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp VF_A0193 d7e58954bc4b0a5649577d8e98547568 451 Pfam PF01618 MotA/TolQ/ExbB proton channel family 320 427 7.8E-29 T 10-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VF_A0193 d7e58954bc4b0a5649577d8e98547568 451 PIRSF PIRSF037714 1 451 9.0E-160 T 10-10-2018 IPR017270 Putative MotA/TolQ/ExbB family protein VF_2281 2e64d44f36acad5c9fad9310601aa79d 264 SMART SM01150 4 263 5.7E-112 T 10-10-2018 IPR009770 Domain of unknown function DUF1338 VF_2281 2e64d44f36acad5c9fad9310601aa79d 264 Gene3D G3DSA:3.10.180.50 1 240 8.7E-91 T 10-10-2018 VF_2281 2e64d44f36acad5c9fad9310601aa79d 264 Pfam PF07063 Domain of unknown function (DUF1338) 10 116 1.3E-20 T 10-10-2018 IPR009770 Domain of unknown function DUF1338 VF_2281 2e64d44f36acad5c9fad9310601aa79d 264 Pfam PF07063 Domain of unknown function (DUF1338) 137 262 3.1E-25 T 10-10-2018 IPR009770 Domain of unknown function DUF1338 VF_A0656 0ef368423f88a6e02a8e20d5a9c8ac79 174 SUPERFAMILY SSF52540 3 171 3.83E-11 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0656 0ef368423f88a6e02a8e20d5a9c8ac79 174 PIRSF PIRSF007531 1 174 3.3E-36 T 10-10-2018 IPR012853 Chloramphenicol phosphotransferase-like GO:0005524|GO:0016740 VF_A0656 0ef368423f88a6e02a8e20d5a9c8ac79 174 Pfam PF07931 Chloramphenicol phosphotransferase-like protein 4 170 2.8E-35 T 10-10-2018 IPR012853 Chloramphenicol phosphotransferase-like GO:0005524|GO:0016740 VF_A0656 0ef368423f88a6e02a8e20d5a9c8ac79 174 Gene3D G3DSA:3.40.50.300 3 171 2.1E-35 T 10-10-2018 VF_0336 25413c0efeed6ce136bebf396d1d71bb 425 Pfam PF00999 Sodium/hydrogen exchanger family 21 415 2.2E-56 T 10-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 VF_1802 7121f1db59067ea04dde4e0a755be188 176 Pfam PF04315 Elongation factor P hydroxylase 11 173 8.3E-72 T 10-10-2018 IPR007411 Elongation factor P hydroxylase VF_A0879 c5390552e77ee6b3306c5bb8934aba5c 295 Gene3D G3DSA:3.20.20.450 63 294 7.3E-41 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0879 c5390552e77ee6b3306c5bb8934aba5c 295 Pfam PF00563 EAL domain 68 288 4.5E-29 T 10-10-2018 IPR001633 EAL domain VF_A0879 c5390552e77ee6b3306c5bb8934aba5c 295 SMART SM00052 60 293 1.1E-9 T 10-10-2018 IPR001633 EAL domain VF_A0879 c5390552e77ee6b3306c5bb8934aba5c 295 SUPERFAMILY SSF141868 66 290 1.44E-43 T 10-10-2018 IPR035919 EAL domain superfamily VF_1923 3833c974817b8a63904eb1f0c2391c39 116 Pfam PF03960 ArsC family 6 115 1.2E-17 T 10-10-2018 IPR006660 Arsenate reductase-like VF_1923 3833c974817b8a63904eb1f0c2391c39 116 SUPERFAMILY SSF52833 2 116 1.59E-33 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_1923 3833c974817b8a63904eb1f0c2391c39 116 Gene3D G3DSA:3.40.30.10 1 116 1.8E-47 T 10-10-2018 VF_1923 3833c974817b8a63904eb1f0c2391c39 116 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 3 116 1.6E-47 T 10-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 VF_0222 f11b66fc9c10a0036050d3f39825c8ab 64 Pfam PF09526 Probable metal-binding protein (DUF2387) 2 55 2.2E-22 T 10-10-2018 IPR012658 Conserved hypothetical protein CHP02443 VF_0222 f11b66fc9c10a0036050d3f39825c8ab 64 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 2 58 2.3E-29 T 10-10-2018 IPR012658 Conserved hypothetical protein CHP02443 VF_0100 4c0f336bd64c95f4e6da2b839f84f315 310 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 15 273 2.0E-81 T 10-10-2018 IPR017039 Virulence factor BrkB VF_0100 4c0f336bd64c95f4e6da2b839f84f315 310 Pfam PF03631 Virulence factor BrkB 26 270 1.9E-57 T 10-10-2018 IPR017039 Virulence factor BrkB VF_0100 4c0f336bd64c95f4e6da2b839f84f315 310 PIRSF PIRSF035875 2 281 1.4E-49 T 10-10-2018 IPR017039 Virulence factor BrkB VF_0100 4c0f336bd64c95f4e6da2b839f84f315 310 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 9 292 23.501 T 10-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial VF_B0039 0019244de70c258081b59e5ec124cd1e 817 SUPERFAMILY SSF52540 384 746 1.25E-28 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_B0039 0019244de70c258081b59e5ec124cd1e 817 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 177 374 2.3E-36 T 10-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 VF_B0039 0019244de70c258081b59e5ec124cd1e 817 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 12 796 1.7E-224 T 10-10-2018 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 VF_0969 8b6f4df92db6b24069131f3883072932 128 Pfam PF04134 Protein of unknown function, DUF393 6 112 4.1E-24 T 10-10-2018 IPR007263 Protein of unknown function DUF393 VF_0428 2957c1cea033f9aa20b85ebe499aee73 184 Pfam PF02325 YGGT family 10 76 4.8E-19 T 10-10-2018 IPR003425 CCB3/YggT GO:0016020 VF_0428 2957c1cea033f9aa20b85ebe499aee73 184 Pfam PF02325 YGGT family 108 172 3.6E-19 T 10-10-2018 IPR003425 CCB3/YggT GO:0016020 VF_1303 02ef9b92aaae53de680939c1385ac889 159 Pfam PF05751 FixH 7 147 1.1E-43 T 10-10-2018 IPR008620 Nitrogen fixation protein FixH VF_A0380 beb9d41f9d3345a198dc678eb17a2684 126 Pfam PF11742 Protein of unknown function (DUF3302) 3 78 1.4E-40 T 10-10-2018 IPR011223 Uncharacterised conserved protein UCP028770 VF_A0380 beb9d41f9d3345a198dc678eb17a2684 126 PIRSF PIRSF028770 1 126 5.8E-62 T 10-10-2018 IPR011223 Uncharacterised conserved protein UCP028770 VF_A0526 b19a3e172e68ed9d464d0a527419a0b6 289 SUPERFAMILY SSF141868 7 222 1.28E-38 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0526 b19a3e172e68ed9d464d0a527419a0b6 289 Gene3D G3DSA:3.20.20.450 2 229 1.4E-34 T 10-10-2018 IPR035919 EAL domain superfamily VF_A0526 b19a3e172e68ed9d464d0a527419a0b6 289 SMART SM00052 1 219 8.8E-9 T 10-10-2018 IPR001633 EAL domain VF_A0526 b19a3e172e68ed9d464d0a527419a0b6 289 Pfam PF00563 EAL domain 7 214 3.7E-23 T 10-10-2018 IPR001633 EAL domain VF_0646 9e374be24726313a7a23e32bde70306e 199 SUPERFAMILY SSF52833 21 197 7.02E-43 T 10-10-2018 IPR036249 Thioredoxin-like superfamily VF_0646 9e374be24726313a7a23e32bde70306e 199 PIRSF PIRSF001488 1 199 1.2E-60 T 10-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL VF_0646 9e374be24726313a7a23e32bde70306e 199 ProSitePatterns PS00194 Thioredoxin family active site. 41 59 - T 10-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VF_0646 9e374be24726313a7a23e32bde70306e 199 Gene3D G3DSA:3.40.30.10 17 199 2.4E-48 T 10-10-2018 VF_0646 9e374be24726313a7a23e32bde70306e 199 Pfam PF01323 DSBA-like thioredoxin domain 61 178 3.2E-17 T 10-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 VF_1023 a6b81c8f542a59a7b72ea5766f352c4b 100 Gene3D G3DSA:3.30.70.1060 1 98 1.6E-37 T 10-10-2018 VF_1023 a6b81c8f542a59a7b72ea5766f352c4b 100 SUPERFAMILY SSF54909 1 97 1.64E-30 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel VF_1023 a6b81c8f542a59a7b72ea5766f352c4b 100 Pfam PF03795 YCII-related domain 1 95 2.9E-29 T 10-10-2018 IPR005545 YCII-related VF_1684 99329a38a1164dfd314209d63477122c 187 Pfam PF01694 Rhomboid family 32 171 1.3E-15 T 10-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 VF_1684 99329a38a1164dfd314209d63477122c 187 Gene3D G3DSA:1.20.1540.10 3 183 2.6E-18 T 10-10-2018 IPR035952 Rhomboid-like superfamily VF_1684 99329a38a1164dfd314209d63477122c 187 TIGRFAM TIGR03902 rhom_GG_sort: rhombosortase 22 170 4.6E-51 T 10-10-2018 IPR023826 Rhomboid-like serine protease, proteobacteria VF_1684 99329a38a1164dfd314209d63477122c 187 SUPERFAMILY SSF144091 15 170 1.19E-26 T 10-10-2018 VF_1725 933aac4658bdb3113f0c52f9f4fd3a92 510 SUPERFAMILY SSF53474 64 444 1.08E-30 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_1725 933aac4658bdb3113f0c52f9f4fd3a92 510 Pfam PF00561 alpha/beta hydrolase fold 82 448 7.2E-26 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VF_0641 c9a00ef001ad728c87d8a29eecd5e8fc 425 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 4 425 33.342 T 10-10-2018 IPR021144 Uncharacterised protein family UPF0597 VF_0641 c9a00ef001ad728c87d8a29eecd5e8fc 425 Pfam PF03313 Serine dehydratase alpha chain 86 420 1.3E-51 T 10-10-2018 IPR005130 Serine dehydratase-like, alpha subunit VF_0641 c9a00ef001ad728c87d8a29eecd5e8fc 425 PIRSF PIRSF006054 1 425 1.2E-170 T 10-10-2018 IPR021144 Uncharacterised protein family UPF0597 VF_A0611 b80e046d70e0ca94f047ee2526e8f55c 412 Gene3D G3DSA:1.20.1250.20 3 404 1.1E-56 T 10-10-2018 VF_A0611 b80e046d70e0ca94f047ee2526e8f55c 412 Pfam PF07690 Major Facilitator Superfamily 15 295 5.1E-32 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VF_A0611 b80e046d70e0ca94f047ee2526e8f55c 412 SUPERFAMILY SSF103473 9 398 7.85E-59 T 10-10-2018 IPR036259 MFS transporter superfamily VF_A0845 a037226fe092bdd2220285c836a26585 268 SUPERFAMILY SSF56935 43 251 8.7E-5 T 10-10-2018 VF_2363 92e60998d6cf15ea863947082de65c2f 395 Pfam PF01103 Surface antigen 189 281 5.3E-7 T 10-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 VF_2363 92e60998d6cf15ea863947082de65c2f 395 Gene3D G3DSA:2.40.160.50 110 299 7.8E-8 T 10-10-2018 VF_1776 e803bd59c7999d90bc5f4c343f9a8f67 206 Gene3D G3DSA:3.30.70.580 19 94 9.1E-28 T 10-10-2018 VF_1776 e803bd59c7999d90bc5f4c343f9a8f67 206 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 35 205 1.8E-58 T 10-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 VF_1776 e803bd59c7999d90bc5f4c343f9a8f67 206 Gene3D G3DSA:3.30.70.1560 95 194 7.5E-41 T 10-10-2018 VF_1776 e803bd59c7999d90bc5f4c343f9a8f67 206 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 66 80 - T 10-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 VF_1776 e803bd59c7999d90bc5f4c343f9a8f67 206 Pfam PF00849 RNA pseudouridylate synthase 31 174 2.1E-15 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_1776 e803bd59c7999d90bc5f4c343f9a8f67 206 SUPERFAMILY SSF55120 27 204 1.92E-42 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VF_A0683 c9e3e8c06ff3ac2b6aefaed7f11e34fb 557 Pfam PF13584 Oxygen tolerance 38 456 1.3E-70 T 10-10-2018 IPR025738 Aerotolerance-related protein BatD VF_1251 5c2a2008387755fdc61adbe326998d59 334 Gene3D G3DSA:3.30.470.20 209 329 2.2E-7 T 10-10-2018 VF_1251 5c2a2008387755fdc61adbe326998d59 334 SUPERFAMILY SSF56059 112 329 1.28E-20 T 10-10-2018 VF_1383 7505142b28862c08f8a7a51440981a7b 747 Pfam PF01136 Peptidase family U32 77 292 6.3E-64 T 10-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VF_1383 7505142b28862c08f8a7a51440981a7b 747 Pfam PF01136 Peptidase family U32 526 660 2.8E-5 T 10-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VF_1383 7505142b28862c08f8a7a51440981a7b 747 Pfam PF12392 Collagenase 334 442 2.6E-6 T 10-10-2018 IPR020988 Peptidase U32, collagenase VF_1221 45f85295a6298744aa6957e34cd5c21b 345 Gene3D G3DSA:1.10.3470.10 8 345 3.4E-102 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_1221 45f85295a6298744aa6957e34cd5c21b 345 SUPERFAMILY SSF81345 7 339 3.27E-82 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_1221 45f85295a6298744aa6957e34cd5c21b 345 Pfam PF01032 FecCD transport family 19 339 2.1E-88 T 10-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VF_A0625 6b87f57fb7cb43f1da24d5e1af2061fd 149 Pfam PF04945 YHS domain 44 87 4.0E-7 T 10-10-2018 IPR007029 YHS domain VF_1745 29b6d99672ba65fc835a19770d6399de 173 Pfam PF02620 Uncharacterized ACR, COG1399 62 171 2.0E-17 T 10-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD VF_1135 4ca6d22823c2e6ac6b3679e66bd98276 465 SUPERFAMILY SSF48452 68 257 9.1E-7 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1978 48d2aa3b39e11ffeda4eb1cb11cc3b1f 211 Pfam PF13505 Outer membrane protein beta-barrel domain 6 195 2.5E-16 T 10-10-2018 IPR027385 Outer membrane protein beta-barrel VF_1978 48d2aa3b39e11ffeda4eb1cb11cc3b1f 211 Gene3D G3DSA:2.40.160.20 18 211 1.3E-17 T 10-10-2018 VF_1978 48d2aa3b39e11ffeda4eb1cb11cc3b1f 211 SUPERFAMILY SSF56925 17 211 2.09E-20 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VF_A1008 00099d6a071e270f6f77ab9ed7f0ab61 242 Gene3D G3DSA:2.40.160.40 27 242 7.6E-48 T 10-10-2018 VF_A1008 00099d6a071e270f6f77ab9ed7f0ab61 242 Pfam PF06178 Oligogalacturonate-specific porin protein (KdgM) 26 241 5.7E-37 T 10-10-2018 IPR009331 Oligogalacturonate-specific porin VF_2602 faa30e9962b01636bbf4abbcc153cd79 307 Gene3D G3DSA:3.60.120.10 23 268 6.3E-48 T 10-10-2018 IPR005801 ADC synthase GO:0009058 VF_2602 faa30e9962b01636bbf4abbcc153cd79 307 SUPERFAMILY SSF56322 32 265 2.88E-34 T 10-10-2018 IPR005801 ADC synthase GO:0009058 VF_2602 faa30e9962b01636bbf4abbcc153cd79 307 Pfam PF04715 Anthranilate synthase component I, N terminal region 41 214 6.6E-16 T 10-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VF_1675 77659aa7b0fd2b2c1471a3744e1bd48b 177 Pfam PF01872 RibD C-terminal domain 5 164 2.1E-18 T 10-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 VF_1675 77659aa7b0fd2b2c1471a3744e1bd48b 177 Gene3D G3DSA:3.40.430.10 4 175 8.8E-51 T 10-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 VF_1675 77659aa7b0fd2b2c1471a3744e1bd48b 177 SUPERFAMILY SSF53597 5 175 6.68E-34 T 10-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 VF_1241 1a22914196c08e9509a27798e11ccf85 350 Pfam PF00793 DAHP synthetase I family 43 338 1.2E-97 T 10-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VF_1241 1a22914196c08e9509a27798e11ccf85 350 PIRSF PIRSF001361 2 350 7.8E-154 T 10-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VF_1241 1a22914196c08e9509a27798e11ccf85 350 Gene3D G3DSA:3.20.20.70 1 350 7.3E-150 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VF_1241 1a22914196c08e9509a27798e11ccf85 350 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 348 5.5E-157 T 10-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VF_1241 1a22914196c08e9509a27798e11ccf85 350 SUPERFAMILY SSF51569 8 347 4.29E-129 T 10-10-2018 VF_1650 61cb8dba0bf08d26017c18c84bc31bb2 602 Pfam PF00884 Sulfatase 264 514 6.6E-24 T 10-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VF_1650 61cb8dba0bf08d26017c18c84bc31bb2 602 PIRSF PIRSF004950 6 600 6.3E-214 T 10-10-2018 IPR012159 Inner membrane protein YejM VF_1650 61cb8dba0bf08d26017c18c84bc31bb2 602 Gene3D G3DSA:3.40.720.10 250 526 6.3E-41 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VF_1650 61cb8dba0bf08d26017c18c84bc31bb2 602 SUPERFAMILY SSF53649 257 577 4.51E-53 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VF_1650 61cb8dba0bf08d26017c18c84bc31bb2 602 Pfam PF11893 Domain of unknown function (DUF3413) 6 252 7.0E-99 T 10-10-2018 IPR024588 Inner membrane protein YejM, N-terminal VF_1474 ebc2864bff80659f5170b14e15513347 183 Pfam PF08547 Complex I intermediate-associated protein 30 (CIA30) 9 159 4.1E-39 T 10-10-2018 IPR013857 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 Reactome: R-HSA-6799198 VF_1474 ebc2864bff80659f5170b14e15513347 183 SUPERFAMILY SSF49785 8 159 2.38E-19 T 10-10-2018 IPR008979 Galactose-binding-like domain superfamily VF_1490 86b917fcf3da1eb99dd3c639f6f194c8 324 Pfam PF03466 LysR substrate binding domain 91 291 1.0E-37 T 10-10-2018 IPR005119 LysR, substrate-binding VF_1490 86b917fcf3da1eb99dd3c639f6f194c8 324 SUPERFAMILY SSF53850 89 322 1.66E-41 T 10-10-2018 VF_1490 86b917fcf3da1eb99dd3c639f6f194c8 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 1.3E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1490 86b917fcf3da1eb99dd3c639f6f194c8 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.4E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1490 86b917fcf3da1eb99dd3c639f6f194c8 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.4E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1490 86b917fcf3da1eb99dd3c639f6f194c8 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.4E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VF_1490 86b917fcf3da1eb99dd3c639f6f194c8 324 SUPERFAMILY SSF46785 1 113 2.99E-13 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VF_1490 86b917fcf3da1eb99dd3c639f6f194c8 324 Gene3D G3DSA:1.10.10.10 1 86 1.2E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VF_1490 86b917fcf3da1eb99dd3c639f6f194c8 324 Gene3D G3DSA:3.40.190.10 92 303 1.6E-95 T 10-10-2018 VF_1490 86b917fcf3da1eb99dd3c639f6f194c8 324 Gene3D G3DSA:3.40.190.10 167 267 1.6E-95 T 10-10-2018 VF_0733 05fa27c9b0edd52ea475ba8c3b3072b5 77 Pfam PF04400 (Na+)-NQR maturation NqrM 22 62 5.5E-21 T 10-10-2018 IPR007495 (Na+)-NQR maturation factor NqrM VF_0737 38aae323a85fa2a9f19c51664cd87a96 430 Pfam PF00860 Permease family 18 390 2.8E-52 T 10-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 VF_0737 38aae323a85fa2a9f19c51664cd87a96 430 PIRSF PIRSF005353 1 430 2.9E-183 T 10-10-2018 IPR026033 Purine permease PbuG-like VF_A0409 b5dcb47817c99b12bd0d9d4a1ace2597 73 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 15 69 6.0E-25 T 10-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor VF_A0409 b5dcb47817c99b12bd0d9d4a1ace2597 73 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 3 69 5.9E-29 T 10-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor VF_A0781 9285d23f0bba71d49505e0680513316a 671 SUPERFAMILY SSF81345 10 333 5.89E-56 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_A0781 9285d23f0bba71d49505e0680513316a 671 SUPERFAMILY SSF81345 358 665 2.09E-61 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_A0781 9285d23f0bba71d49505e0680513316a 671 Pfam PF01032 FecCD transport family 32 333 3.4E-61 T 10-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VF_A0781 9285d23f0bba71d49505e0680513316a 671 Pfam PF01032 FecCD transport family 364 665 2.1E-67 T 10-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VF_A0781 9285d23f0bba71d49505e0680513316a 671 Gene3D G3DSA:1.10.3470.10 7 338 1.2E-61 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_A0781 9285d23f0bba71d49505e0680513316a 671 Gene3D G3DSA:1.10.3470.10 353 670 2.2E-69 T 10-10-2018 IPR037294 ABC transporter, BtuC-like VF_1483 12058b90412dcdf33d2f4800e668c483 116 Pfam PF03788 LrgA family 16 107 1.5E-25 T 10-10-2018 IPR005538 LrgA/CidA family GO:0016021 VF_0499 ca6527f24c69a0e728f9c753024387fb 148 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 12 143 3.6E-37 T 10-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 VF_0499 ca6527f24c69a0e728f9c753024387fb 148 Gene3D G3DSA:3.40.630.30 3 147 1.9E-39 T 10-10-2018 VF_0499 ca6527f24c69a0e728f9c753024387fb 148 Pfam PF00583 Acetyltransferase (GNAT) family 15 121 4.3E-13 T 10-10-2018 IPR000182 GNAT domain VF_0499 ca6527f24c69a0e728f9c753024387fb 148 SUPERFAMILY SSF55729 1 145 6.42E-31 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_1372 ca21a3d51979c003f890c657e7d6a43d 225 Pfam PF06149 Protein of unknown function (DUF969) 4 218 4.7E-87 T 10-10-2018 IPR010374 Protein of unknown function DUF969 VF_2128 0e9c422a831f12b403129b0e8108059d 231 SUPERFAMILY SSF53167 1 230 2.23E-72 T 10-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VF_2128 0e9c422a831f12b403129b0e8108059d 231 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 230 47.408 T 10-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VF_2128 0e9c422a831f12b403129b0e8108059d 231 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 228 1.4E-99 T 10-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VF_2128 0e9c422a831f12b403129b0e8108059d 231 Gene3D G3DSA:3.40.50.1580 1 231 8.0E-69 T 10-10-2018 VF_2128 0e9c422a831f12b403129b0e8108059d 231 Pfam PF01048 Phosphorylase superfamily 2 227 6.4E-49 T 10-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VF_0882 4dc0e03b7745498212e7777afe7f67f4 226 Pfam PF11140 Protein of unknown function (DUF2913) 9 219 2.5E-82 T 10-10-2018 IPR021316 Protein of unknown function DUF2913 VF_A0576 e4ced9f50466969f6c0a2c31ae18a187 394 Gene3D G3DSA:3.40.50.300 1 210 5.4E-37 T 10-10-2018 VF_A0576 e4ced9f50466969f6c0a2c31ae18a187 394 Pfam PF05707 Zonular occludens toxin (Zot) 2 211 1.7E-59 T 10-10-2018 IPR008900 Zona occludens toxin VF_A0690 49f973d777a7be1321780fa95bc39128 1363 SUPERFAMILY SSF55486 294 663 3.33E-11 T 10-10-2018 VF_A0690 49f973d777a7be1321780fa95bc39128 1363 SUPERFAMILY SSF55486 511 629 2.11E-8 T 10-10-2018 VF_A0690 49f973d777a7be1321780fa95bc39128 1363 Gene3D G3DSA:3.40.390.10 537 669 2.8E-5 T 10-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 VF_A0697 851f3e928473356e686f84e68df774df 92 Gene3D G3DSA:3.10.50.40 2 92 1.3E-32 T 10-10-2018 VF_A0697 851f3e928473356e686f84e68df774df 92 Pfam PF13616 PPIC-type PPIASE domain 13 89 5.2E-22 T 10-10-2018 VF_A0697 851f3e928473356e686f84e68df774df 92 SUPERFAMILY SSF54534 5 89 2.29E-24 T 10-10-2018 VF_A0916 38f9ed3484a25b9f54296abd8edab5f4 456 TIGRFAM TIGR00797 matE: MATE efflux family protein 20 415 4.7E-44 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_A0916 38f9ed3484a25b9f54296abd8edab5f4 456 PIRSF PIRSF006603 3 445 2.0E-54 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_A0916 38f9ed3484a25b9f54296abd8edab5f4 456 Pfam PF01554 MatE 20 181 7.0E-23 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_A0916 38f9ed3484a25b9f54296abd8edab5f4 456 Pfam PF01554 MatE 251 401 3.8E-10 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_1816 c290d8685be243f7a8b08100ad4d5455 405 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 3 115 5.6E-34 T 10-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI VF_1816 c290d8685be243f7a8b08100ad4d5455 405 Gene3D G3DSA:1.25.40.10 153 297 1.9E-18 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_1816 c290d8685be243f7a8b08100ad4d5455 405 Pfam PF14559 Tetratricopeptide repeat 177 244 4.0E-7 T 10-10-2018 VF_1816 c290d8685be243f7a8b08100ad4d5455 405 SUPERFAMILY SSF48452 162 263 1.69E-17 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VF_A0077 b295dc5133149815722dd5c54e64c12b 264 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 25 2.1E-5 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site VF_2156 c4247d986a15dd7fcfefda98ebf0a13b 421 Pfam PF02447 GntP family permease 10 414 9.3E-26 T 10-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 VF_A0369 96e28c7d6b116f6909b957e60256f28f 143 Gene3D G3DSA:3.40.930.10 1 143 4.7E-29 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0369 96e28c7d6b116f6909b957e60256f28f 143 SUPERFAMILY SSF55804 1 143 8.37E-28 T 10-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VF_A0369 96e28c7d6b116f6909b957e60256f28f 143 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 143 3.0E-28 T 10-10-2018 IPR002178 PTS EIIA type-2 domain VF_2516 94f6be567ef2c302e550a8eddb18e27d 313 SUPERFAMILY SSF161098 94 296 1.57E-24 T 10-10-2018 IPR035906 MetI-like superfamily VF_2516 94f6be567ef2c302e550a8eddb18e27d 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 310 1.1E-29 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_2516 94f6be567ef2c302e550a8eddb18e27d 313 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 19 70 6.5E-10 T 10-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VF_2516 94f6be567ef2c302e550a8eddb18e27d 313 Gene3D G3DSA:1.10.3720.10 87 307 2.6E-24 T 10-10-2018 IPR035906 MetI-like superfamily VF_1283 7c65d9b281e2bf81473c4f1d357e2c6c 74 Pfam PF11197 Protein of unknown function (DUF2835) 5 72 3.8E-28 T 10-10-2018 IPR021363 Protein of unknown function DUF2835 VF_0578 759b73e555b04777eba741ffefa412f9 211 Pfam PF01786 Alternative oxidase 2 199 7.1E-78 T 10-10-2018 IPR002680 Alternative oxidase GO:0009916|GO:0055114 VF_0578 759b73e555b04777eba741ffefa412f9 211 PIRSF PIRSF005229 1 210 1.1E-96 T 10-10-2018 IPR002680 Alternative oxidase GO:0009916|GO:0055114 VF_0578 759b73e555b04777eba741ffefa412f9 211 Gene3D G3DSA:1.20.1260.140 1 209 5.4E-86 T 10-10-2018 IPR038659 Alternative oxidase superfamily VF_2022 f7d55702e6f64970a5405461eb70e98f 350 Pfam PF04865 Baseplate J-like protein 61 290 1.5E-32 T 10-10-2018 IPR006949 Baseplate protein J-like VF_0703 99212af1716296d45b358ad117585fb3 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 154 31.298 T 10-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_0703 99212af1716296d45b358ad117585fb3 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 150 2.5E-54 T 10-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_0703 99212af1716296d45b358ad117585fb3 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 4.2E-57 T 10-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_0703 99212af1716296d45b358ad117585fb3 156 SUPERFAMILY SSF52121 4 154 4.06E-60 T 10-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_0703 99212af1716296d45b358ad117585fb3 156 Gene3D G3DSA:3.40.50.960 1 156 5.8E-64 T 10-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VF_A0742 78050b8cae2c288ec3944a87aa41d9b1 341 Pfam PF11168 Protein of unknown function (DUF2955) 2 141 1.5E-47 T 10-10-2018 IPR022604 Protein of unknown function DUF2955 VF_A0742 78050b8cae2c288ec3944a87aa41d9b1 341 PIRSF PIRSF029594 1 335 9.5E-173 T 10-10-2018 IPR016926 Uncharacterised conserved protein UCP029594 VF_0416 0397503f0e42b14a2399aed0931ff424 158 Pfam PF06271 RDD family 11 148 4.1E-17 T 10-10-2018 IPR010432 RDD VF_0328 7459bdea3495195a5dda606aa263b7b8 214 Pfam PF10986 Protein of unknown function (DUF2796) 47 210 5.0E-52 T 10-10-2018 IPR021253 Protein of unknown function DUF2796 VF_1814 31d03539d59679a096e440d906da784c 201 Pfam PF09997 Predicted membrane protein (DUF2238) 46 182 1.1E-50 T 10-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 VF_1814 31d03539d59679a096e440d906da784c 201 PIRSF PIRSF020606 5 201 8.7E-76 T 10-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 VF_0342 a08d46ef505047a107d3ea908386c6f4 289 Gene3D G3DSA:3.90.550.10 1 278 3.5E-82 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0342 a08d46ef505047a107d3ea908386c6f4 289 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 2 263 4.9E-125 T 10-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 VF_0342 a08d46ef505047a107d3ea908386c6f4 289 Pfam PF00483 Nucleotidyl transferase 9 266 2.6E-32 T 10-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VF_0342 a08d46ef505047a107d3ea908386c6f4 289 SUPERFAMILY SSF53448 2 271 3.02E-64 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_1259 fc75d429887b990a713a0d620bd1597d 150 Pfam PF04224 Protein of unknown function, DUF417 6 147 6.0E-40 T 10-10-2018 IPR007339 Inner membrane protein RclC-like VF_1259 fc75d429887b990a713a0d620bd1597d 150 PIRSF PIRSF028065 3 150 7.0E-62 T 10-10-2018 IPR016865 Inner membrane protein RclC VF_1937 f9455672e1ea8f3e32b3b2bc87b9068b 247 Pfam PF08241 Methyltransferase domain 73 126 9.5E-8 T 10-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 VF_1937 f9455672e1ea8f3e32b3b2bc87b9068b 247 SUPERFAMILY SSF53335 74 213 7.7E-17 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VF_1937 f9455672e1ea8f3e32b3b2bc87b9068b 247 Gene3D G3DSA:3.40.50.150 54 181 4.3E-12 T 10-10-2018 VF_A0696 d8c826c9eb327b8fb1fbe0231072efb4 434 Pfam PF00294 pfkB family carbohydrate kinase 138 294 2.6E-12 T 10-10-2018 IPR011611 Carbohydrate kinase PfkB VF_A0696 d8c826c9eb327b8fb1fbe0231072efb4 434 SUPERFAMILY SSF53613 34 417 3.4E-44 T 10-10-2018 IPR029056 Ribokinase-like VF_A0129 b93449318df3c4cb473871cefc70743c 418 Pfam PF03611 PTS system sugar-specific permease component 11 405 3.9E-136 T 10-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 VF_0208 f04c18f5245d013448f28f36ce2cb788 117 Pfam PF11333 Protein of unknown function (DUF3135) 10 89 6.5E-27 T 10-10-2018 IPR021482 Protein of unknown function DUF3135 VF_1106 a085c2475114eff619879256b14a46b0 405 Pfam PF02687 FtsX-like permease family 293 397 1.8E-13 T 10-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VF_1106 a085c2475114eff619879256b14a46b0 405 Pfam PF12704 MacB-like periplasmic core domain 19 234 5.2E-16 T 10-10-2018 IPR025857 MacB-like periplasmic core domain VF_1269 c3103e6c8520b52042c59dda506b9389 135 SUPERFAMILY SSF51306 4 124 2.62E-26 T 10-10-2018 IPR036286 LexA/Signal peptidase-like superfamily VF_1269 c3103e6c8520b52042c59dda506b9389 135 Gene3D G3DSA:2.10.109.10 14 126 1.2E-33 T 10-10-2018 VF_1269 c3103e6c8520b52042c59dda506b9389 135 Pfam PF00717 Peptidase S24-like 46 109 3.8E-10 T 10-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C VF_0707 527ca4f6a5317ec36520f96249480b1c 372 Gene3D G3DSA:3.40.50.2300 39 368 2.4E-136 T 10-10-2018 VF_0707 527ca4f6a5317ec36520f96249480b1c 372 SUPERFAMILY SSF53822 33 368 1.81E-80 T 10-10-2018 IPR028082 Periplasmic binding protein-like I VF_0707 527ca4f6a5317ec36520f96249480b1c 372 Pfam PF13407 Periplasmic binding protein domain 75 330 2.5E-18 T 10-10-2018 IPR025997 Periplasmic binding protein VF_0707 527ca4f6a5317ec36520f96249480b1c 372 Gene3D G3DSA:3.40.50.2300 186 364 2.4E-136 T 10-10-2018 VF_A0026 5297fc206677091f28310658d59e3e0a 100 Pfam PF12977 Domain of Unknown Function with PDB structure (DUF3861) 9 95 6.1E-30 T 10-10-2018 IPR024476 Protein of unknown function DUF3861 VF_A0026 5297fc206677091f28310658d59e3e0a 100 Gene3D G3DSA:1.10.225.20 6 96 3.4E-29 T 10-10-2018 VF_1433 8d80958d249569f47e66660baa53ea50 146 SUPERFAMILY SSF53146 1 116 3.01E-22 T 10-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily VF_1433 8d80958d249569f47e66660baa53ea50 146 Gene3D G3DSA:3.30.420.130 1 98 1.5E-15 T 10-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily VF_1433 8d80958d249569f47e66660baa53ea50 146 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 9 87 1.9E-12 T 10-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis VF_1024 111d23ee86f27caf7b553a140f788dc6 143 Pfam PF03061 Thioesterase superfamily 36 108 2.9E-20 T 10-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 VF_1024 111d23ee86f27caf7b553a140f788dc6 143 SUPERFAMILY SSF54637 18 141 3.67E-40 T 10-10-2018 IPR029069 HotDog domain superfamily VF_1024 111d23ee86f27caf7b553a140f788dc6 143 Gene3D G3DSA:3.10.129.10 11 143 2.2E-41 T 10-10-2018 VF_2103 90d42e1f3c9943847dcb623dcd7bdf15 113 Pfam PF05164 Cell division protein ZapA 11 88 7.2E-20 T 10-10-2018 IPR007838 Cell division protein ZapA-like VF_2103 90d42e1f3c9943847dcb623dcd7bdf15 113 Gene3D G3DSA:1.10.20.30 2 52 1.2E-19 T 10-10-2018 VF_2103 90d42e1f3c9943847dcb623dcd7bdf15 113 SUPERFAMILY SSF102829 11 99 2.35E-22 T 10-10-2018 IPR036192 Cell division protein ZapA-like superfamily VF_1385 832ca692a2ca4b2f76d4cfbb59920549 157 Pfam PF13673 Acetyltransferase (GNAT) domain 38 139 3.1E-9 T 10-10-2018 IPR000182 GNAT domain VF_1385 832ca692a2ca4b2f76d4cfbb59920549 157 Gene3D G3DSA:3.40.630.30 1 150 1.5E-15 T 10-10-2018 VF_1385 832ca692a2ca4b2f76d4cfbb59920549 157 SUPERFAMILY SSF55729 1 142 7.6E-20 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_1543 24f95bc09ba10788aee7789f1112b73b 447 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 16 447 1.0E-115 T 10-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VF_1543 24f95bc09ba10788aee7789f1112b73b 447 SUPERFAMILY SSF56935 24 447 3.43E-92 T 10-10-2018 VF_1543 24f95bc09ba10788aee7789f1112b73b 447 Gene3D G3DSA:2.40.160.60 24 447 3.9E-122 T 10-10-2018 VF_1948 801a6c5aa7fd27e952c5c809cd8992e9 207 Pfam PF01351 Ribonuclease HII 23 199 1.4E-38 T 10-10-2018 IPR024567 Ribonuclease HII/HIII domain VF_1948 801a6c5aa7fd27e952c5c809cd8992e9 207 Gene3D G3DSA:3.30.420.10 3 207 3.4E-78 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VF_1948 801a6c5aa7fd27e952c5c809cd8992e9 207 SUPERFAMILY SSF53098 15 205 1.09E-69 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily VF_1948 801a6c5aa7fd27e952c5c809cd8992e9 207 Hamap MF_00052_B Ribonuclease HII [rnhB]. 21 200 38.298 T 10-10-2018 IPR022898 Ribonuclease HII GO:0004523 VF_0333 257e946170d13af51a23c19077131a91 1266 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 929 1265 1.4E-66 T 10-10-2018 IPR007452 Translocation and assembly module TamB VF_A1136 8f6c10fc33aadf2ed90292ec13c0c1c5 94 Pfam PF11747 Killing trait 15 81 8.9E-29 T 10-10-2018 IPR021070 Killing trait, RebB VF_0151 d7b4ddc0ddfa4eddd905552891d2ac34 410 Pfam PF04932 O-Antigen ligase 190 342 2.6E-19 T 10-10-2018 IPR007016 O-antigen ligase-related VF_A0874 bb64e063e30ea9b72882861b64a07c48 445 ProDom PD042642 PILUS BIOSYNTHESIS B TOXIN-COREGULATED TOXIN TCPB TCP COREGULATED CO-REGULATED TCPB 1 440 0.0 T 10-10-2018 VF_1461 64b917b08cdc19d4e2335aaf33178e66 671 Pfam PF12532 Protein of unknown function (DUF3732) 462 666 2.3E-65 T 10-10-2018 IPR022205 Protein of unknown function DUF3732 VF_2503 e7403f2754bd9ccb8903c6d2c915bf2d 120 TIGRFAM TIGR03577 EF_0830: conserved hypothetical protein EF_0830/AHA_3911 4 118 2.7E-68 T 10-10-2018 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 VF_2503 e7403f2754bd9ccb8903c6d2c915bf2d 120 Pfam PF14272 Glycine-rich SFCGS 4 117 4.8E-63 T 10-10-2018 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 VF_1317 e6d717abb31cd5bd3e34138d04c1d09d 256 Gene3D G3DSA:1.10.3720.10 4 255 1.9E-48 T 10-10-2018 IPR035906 MetI-like superfamily VF_1317 e6d717abb31cd5bd3e34138d04c1d09d 256 SUPERFAMILY SSF161098 4 254 2.15E-55 T 10-10-2018 IPR035906 MetI-like superfamily VF_1317 e6d717abb31cd5bd3e34138d04c1d09d 256 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 251 1.0E-19 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VF_A0945 78c2f9fde0a7e7b3fe6882b32a7164c1 208 Pfam PF11153 Protein of unknown function (DUF2931) 7 206 4.0E-47 T 10-10-2018 IPR021326 Protein of unknown function DUF2931 VF_0300 8cb9d0d1fa3896bf9391f74eb1e648d3 333 SUPERFAMILY SSF56935 116 237 8.24E-6 T 10-10-2018 VF_0300 8cb9d0d1fa3896bf9391f74eb1e648d3 333 Pfam PF04338 Protein of unknown function, DUF481 118 333 3.0E-51 T 10-10-2018 IPR007433 Protein of unknown function DUF481 VF_B0056 8376325cbc07f3fa6b3f7521912bfb7b 100 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 2 88 3.8E-23 T 10-10-2018 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB VF_1560 804713829f02764d36e101047b4b2aac 225 Pfam PF02698 DUF218 domain 55 190 5.3E-21 T 10-10-2018 IPR003848 Domain of unknown function DUF218 VF_0858 ff3d71d3c68c3999449b27782bf4b885 156 SUPERFAMILY SSF54637 5 146 7.7E-26 T 10-10-2018 IPR029069 HotDog domain superfamily VF_0858 ff3d71d3c68c3999449b27782bf4b885 156 PIRSF PIRSF020565 1 156 5.0E-53 T 10-10-2018 IPR016776 3-hydroxylacyl-(acyl carrier protein) dehydratase, predicted VF_0858 ff3d71d3c68c3999449b27782bf4b885 156 Gene3D G3DSA:3.10.129.10 8 144 1.3E-18 T 10-10-2018 VF_A1078 dda12afdcedf9df27163f90b64d3d35e 214 SUPERFAMILY SSF53474 3 193 4.48E-18 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold VF_A1078 dda12afdcedf9df27163f90b64d3d35e 214 Pfam PF07819 PGAP1-like protein 56 194 4.4E-9 T 10-10-2018 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 Reactome: R-HSA-162791 VF_A1179 c1092098dc2cf78988586f6946e1685f 144 Pfam PF01478 Type IV leader peptidase family 11 108 3.3E-10 T 10-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 VF_1000 32caead95441c12d09cb7be91b78824b 346 Pfam PF06996 Type VI secretion, TssG 57 331 3.3E-81 T 10-10-2018 IPR010732 Type VI secretion, TssG-like VF_1000 32caead95441c12d09cb7be91b78824b 346 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 28 331 1.3E-94 T 10-10-2018 IPR010732 Type VI secretion, TssG-like VF_1248 e0b3382336531f5b7c33a6dc7983deb5 37 SUPERFAMILY SSF53383 2 36 2.73E-7 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VF_1248 e0b3382336531f5b7c33a6dc7983deb5 37 Gene3D G3DSA:3.90.1150.10 1 37 1.4E-11 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VF_1456 ed32f1ed990c6eae4108b83051400968 209 Pfam PF01810 LysE type translocator 14 208 8.7E-36 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_1456 ed32f1ed990c6eae4108b83051400968 209 PIRSF PIRSF006324 1 209 8.3E-54 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_0188 3101854b0185f39eaddd4f5bcd36062a 329 SUPERFAMILY SSF53448 3 176 1.69E-20 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0188 3101854b0185f39eaddd4f5bcd36062a 329 Pfam PF00535 Glycosyl transferase family 2 4 115 1.6E-13 T 10-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VF_0188 3101854b0185f39eaddd4f5bcd36062a 329 Gene3D G3DSA:3.90.550.10 2 196 3.2E-18 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_A0988 61ddabed7e5817bbb067960c914f620e 320 SUPERFAMILY SSF53613 1 310 1.11E-72 T 10-10-2018 IPR029056 Ribokinase-like VF_A0988 61ddabed7e5817bbb067960c914f620e 320 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 258 271 - T 10-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VF_A0988 61ddabed7e5817bbb067960c914f620e 320 Pfam PF00294 pfkB family carbohydrate kinase 4 305 1.2E-59 T 10-10-2018 IPR011611 Carbohydrate kinase PfkB VF_A0988 61ddabed7e5817bbb067960c914f620e 320 Gene3D G3DSA:3.40.1190.20 1 309 8.7E-77 T 10-10-2018 IPR029056 Ribokinase-like VF_0838 da09f8282aecf86de67daa248acf2c30 149 Pfam PF04217 Protein of unknown function, DUF412 9 145 3.1E-60 T 10-10-2018 IPR007334 Uncharacterised protein family UPF0208 VF_0838 da09f8282aecf86de67daa248acf2c30 149 Hamap MF_01101 UPF0208 membrane protein YfbV [yfbV]. 4 149 35.663 T 10-10-2018 IPR007334 Uncharacterised protein family UPF0208 VF_1126 30e2a24ccd69221b9126d3c5697a7829 578 SUPERFAMILY SSF48371 153 462 6.24E-6 T 10-10-2018 IPR016024 Armadillo-type fold VF_1126 30e2a24ccd69221b9126d3c5697a7829 578 SUPERFAMILY SSF48371 128 240 6.71E-6 T 10-10-2018 IPR016024 Armadillo-type fold VF_A0420 aeba7f12d3edd46a3de0d9fa158ac420 125 SUPERFAMILY SSF52540 7 99 2.6E-11 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_A0420 aeba7f12d3edd46a3de0d9fa158ac420 125 Pfam PF13671 AAA domain 8 102 7.5E-11 T 10-10-2018 VF_A0420 aeba7f12d3edd46a3de0d9fa158ac420 125 Gene3D G3DSA:3.40.50.300 5 125 2.1E-23 T 10-10-2018 VF_1037 557ce0d9b45b3379758649e27bafe34c 380 Pfam PF17327 Acyl homoserine lactone synthase 3 378 2.6E-97 T 10-10-2018 IPR035304 Acyl homoserine lactone synthase GO:0009372|GO:0061579 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VF_1037 557ce0d9b45b3379758649e27bafe34c 380 ProDom PD037532 SYNTHASE LACTONE HOMOSERINE AUTOINDUCER N-OCTANOYL VANM AINS LUXM SYNTHESIS 163 376 2.0E-123 T 10-10-2018 IPR020384 Homoserine lactone synthase LuxM/VanM, C-terminal GO:0016747 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 VF_2407 49432f84ade36aa9c8cd7ff5e75f957d 150 Pfam PF10627 Curli assembly protein CsgE 45 149 5.0E-36 T 10-10-2018 IPR018900 Curli assembly protein CsgE VF_A0382 b830cf6d392b71dca144158c9f294449 119 Pfam PF10719 Late competence development protein ComFB 6 82 3.7E-14 T 10-10-2018 IPR019657 Late competence development protein ComFB VF_0113 b03cf40becb945975f7b1188fad152a9 254 Gene3D G3DSA:3.40.50.300 20 236 2.9E-28 T 10-10-2018 VF_0113 b03cf40becb945975f7b1188fad152a9 254 SUPERFAMILY SSF52540 19 206 4.87E-23 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0113 b03cf40becb945975f7b1188fad152a9 254 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 20 197 5.5E-13 T 10-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain VF_0575 61a5d5513e1e513213ff5bc3cf080995 62 Pfam PF01679 Proteolipid membrane potential modulator 1 47 7.9E-7 T 10-10-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 VF_0283 0dbd54d4e2f416b07a726717346c334f 163 Pfam PF12821 Threonine/Serine exporter, ThrE 19 153 3.4E-35 T 10-10-2018 IPR024528 Threonine/Serine exporter, ThrE VF_A0512 d7cd4ac9c5ee38d1488ad5c7e3df038c 101 Pfam PF00589 Phage integrase family 3 80 1.4E-9 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VF_A0512 d7cd4ac9c5ee38d1488ad5c7e3df038c 101 SUPERFAMILY SSF56349 4 81 1.03E-12 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VF_A0512 d7cd4ac9c5ee38d1488ad5c7e3df038c 101 Gene3D G3DSA:1.10.443.10 2 96 5.0E-8 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VF_2464 1d2239c368321bb3dcc134959b5b5a3a 253 Pfam PF01203 Type II secretion system (T2SS), protein N 37 248 2.1E-55 T 10-10-2018 IPR022792 Type II secretion system, protein N VF_0861 05bd0d25ceaa72a8267a59a9ce1f29dd 147 Pfam PF03724 META domain 33 140 3.0E-25 T 10-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ VF_0861 05bd0d25ceaa72a8267a59a9ce1f29dd 147 Gene3D G3DSA:2.40.128.270 38 142 5.6E-27 T 10-10-2018 IPR038670 HslJ-like superfamily VF_A0312 8cec5ed6548c26eb4e0354f27c116454 74 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 1 74 1.7E-29 T 10-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 VF_A0312 8cec5ed6548c26eb4e0354f27c116454 74 Pfam PF06667 Phage shock protein B 2 73 7.4E-32 T 10-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 VF_2549 156ffcf9f0319398d829e48778072659 262 Pfam PF07070 SpoOM protein 4 217 1.9E-75 T 10-10-2018 IPR009776 Sporulation stage 0, protein M VF_0611 26bb7cd913f60aec0158a37b840be2a3 345 Pfam PF12069 Protein of unknown function (DUF3549) 3 340 2.3E-134 T 10-10-2018 IPR021936 Protein of unknown function DUF3549 VF_A1196 1b62b0e5aa9cd85f7875547a44bad823 65 Pfam PF11747 Killing trait 23 63 8.6E-9 T 10-10-2018 IPR021070 Killing trait, RebB VF_1249 6d24dd482fd60def6d6cc376c92506fc 304 SUPERFAMILY SSF51621 14 301 7.85E-60 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VF_1249 6d24dd482fd60def6d6cc376c92506fc 304 Pfam PF13714 Phosphoenolpyruvate phosphomutase 24 278 5.8E-65 T 10-10-2018 VF_1249 6d24dd482fd60def6d6cc376c92506fc 304 Gene3D G3DSA:3.20.20.60 11 299 3.7E-65 T 10-10-2018 VF_1249 6d24dd482fd60def6d6cc376c92506fc 304 TIGRFAM TIGR02320 PEP_mutase: phosphoenolpyruvate mutase 18 303 7.7E-130 T 10-10-2018 IPR012698 Phosphoenolpyruvate phosphomutase, core GO:0050188 KEGG: 00440+5.4.2.9|MetaCyc: PWY-5757|MetaCyc: PWY-6322|MetaCyc: PWY-6682|MetaCyc: PWY-6839|MetaCyc: PWY-7419|MetaCyc: PWY-7510|MetaCyc: PWY-7769 VF_1356 8024578ab06f772124bf127a6801c707 169 Pfam PF11185 Protein of unknown function (DUF2971) 29 111 5.5E-12 T 10-10-2018 IPR021352 Protein of unknown function DUF2971 VF_0813 50f0deff87f47055fa4fa44ad7585574 73 Pfam PF10981 Protein of unknown function (DUF2788) 18 67 7.8E-19 T 10-10-2018 IPR021249 Protein of unknown function DUF2788 VF_A0080 3bd740efa5acbfd6a571fb27832210ae 281 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 275 4.4E-80 T 10-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 VF_0915 0b0d087d1726a46ce71a59db658db8fc 280 Pfam PF11207 Protein of unknown function (DUF2989) 18 222 6.2E-66 T 10-10-2018 IPR021372 Protein of unknown function DUF2989 VF_0395 f0588e26945306ce96e02a7e10122c13 264 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 9 262 1.6E-95 T 10-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria VF_0395 f0588e26945306ce96e02a7e10122c13 264 Pfam PF02405 Permease MlaE 49 260 2.1E-74 T 10-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 VF_1678 e348571294a54e394fc1fbae276d35f7 382 SUPERFAMILY SSF56796 3 380 1.96E-96 T 10-10-2018 VF_1678 e348571294a54e394fc1fbae276d35f7 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 354 1.4E-78 T 10-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 VF_1678 e348571294a54e394fc1fbae276d35f7 382 Gene3D G3DSA:3.40.50.1970 1 180 2.0E-47 T 10-10-2018 VF_1678 e348571294a54e394fc1fbae276d35f7 382 Gene3D G3DSA:1.20.1090.10 181 381 2.3E-32 T 10-10-2018 VF_2296 b39bdeff9c86621637ed4dcf563c3eca 188 Pfam PF05137 Fimbrial assembly protein (PilN) 102 179 8.2E-11 T 10-10-2018 IPR007813 Fimbrial assembly PilN VF_A0149 4590db7d1e7ad1fc653377a0cc6efc88 66 Pfam PF11686 Protein of unknown function (DUF3283) 3 62 4.1E-33 T 10-10-2018 IPR021700 Protein of unknown function DUF3283 VF_A0254 78355ec1a7bac8fc39642bb28ea726d5 126 SUPERFAMILY SSF47413 8 77 1.01E-9 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VF_A0254 78355ec1a7bac8fc39642bb28ea726d5 126 Pfam PF01381 Helix-turn-helix 16 66 2.8E-6 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VF_A0254 78355ec1a7bac8fc39642bb28ea726d5 126 Gene3D G3DSA:1.10.260.40 7 73 9.2E-12 T 10-10-2018 VF_2459 597ba91b03c60614a7042aa6bfb32cde 110 Pfam PF10694 Protein of unknown function (DUF2500) 3 105 2.6E-22 T 10-10-2018 IPR019635 Protein of unknown function DUF2500 VF_1323 c681b5f47304edd150830e0965e9d1d2 96 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 79 1.8E-20 T 10-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain VF_1323 c681b5f47304edd150830e0965e9d1d2 96 SUPERFAMILY SSF54909 5 92 2.27E-30 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel VF_1323 c681b5f47304edd150830e0965e9d1d2 96 Gene3D G3DSA:3.30.70.100 1 94 3.2E-30 T 10-10-2018 VF_1173 7a3c04104c9403afa6476700ef4f80e8 118 Pfam PF10973 Protein of unknown function (DUF2799) 28 111 1.5E-23 T 10-10-2018 IPR021242 Protein of unknown function DUF2799 VF_2505 a4e38bfd4d69537d7f9d63a5a0f756a0 258 Pfam PF14188 Domain of unknown function (DUF4311) 25 237 1.8E-121 T 10-10-2018 IPR020042 Protein of unknown function DUF4311 VF_2505 a4e38bfd4d69537d7f9d63a5a0f756a0 258 TIGRFAM TIGR03580 EF_0832: conserved hypothetical protein EF_0832/AHA_3913 2 258 6.5E-159 T 10-10-2018 IPR020042 Protein of unknown function DUF4311 VF_A0371 bf584389f43bfc6a0d9ff58a0753d935 186 Pfam PF03729 Short repeat of unknown function (DUF308) 20 90 6.7E-12 T 10-10-2018 IPR005325 Protein of unknown function DUF308, membrane VF_A0371 bf584389f43bfc6a0d9ff58a0753d935 186 Pfam PF03729 Short repeat of unknown function (DUF308) 82 145 3.6E-5 T 10-10-2018 IPR005325 Protein of unknown function DUF308, membrane VF_A0501 8f542196c50813a81cc88f166ec3c80e 145 Pfam PF11269 Protein of unknown function (DUF3069) 24 143 2.1E-51 T 10-10-2018 IPR021422 Protein of unknown function DUF3069 VF_A0501 8f542196c50813a81cc88f166ec3c80e 145 SUPERFAMILY SSF158675 1 145 6.41E-51 T 10-10-2018 IPR023132 Sama2622-like superfamily VF_0381 0ba7ea3e5c6ec26973ea58170e2eb981 447 Gene3D G3DSA:3.30.2290.10 7 232 4.4E-81 T 10-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal VF_0381 0ba7ea3e5c6ec26973ea58170e2eb981 447 Pfam PF01523 Putative modulator of DNA gyrase 32 324 1.5E-57 T 10-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 VF_0381 0ba7ea3e5c6ec26973ea58170e2eb981 447 SUPERFAMILY SSF111283 12 446 4.32E-128 T 10-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 VF_A0759 9fc9aaf7401a2238d609414073176cad 189 Pfam PF11086 Protein of unknown function (DUF2878) 7 154 4.7E-42 T 10-10-2018 IPR021306 Protein of unknown function DUF2878 VF_A0873 913c25d3e1caa1dffa3d6f3b815fc034 170 Pfam PF10671 Toxin co-regulated pilus biosynthesis protein Q 91 166 6.4E-14 T 10-10-2018 IPR018927 Toxin co-regulated pilus biosynthesis protein Q, C-terminal VF_A0261 a20ca63070d7ecd46015db02895b2a9e 205 SUPERFAMILY SSF52218 6 182 1.62E-51 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_A0261 a20ca63070d7ecd46015db02895b2a9e 205 Gene3D G3DSA:3.40.50.360 3 183 4.1E-54 T 10-10-2018 IPR029039 Flavoprotein-like superfamily VF_A0261 a20ca63070d7ecd46015db02895b2a9e 205 Pfam PF02525 Flavodoxin-like fold 6 173 1.9E-47 T 10-10-2018 IPR003680 Flavodoxin-like fold VF_1992 dbb14ebc00801b857a61b4158adb160a 364 Pfam PF12060 Domain of unknown function (DUF3541) 34 256 2.3E-115 T 10-10-2018 IPR021928 Protein of unknown function DUF3541 VF_0661 6a70a7df116f304fdb6b524b4aa791bc 62 Pfam PF14056 Domain of unknown function (DUF4250) 8 61 4.6E-22 T 10-10-2018 IPR025346 Protein of unknown function DUF4250 VF_A0887 52ba44045d4f53b13d76c687e56f0660 542 TIGRFAM TIGR03368 cellulose_yhjU: cellulose synthase operon protein YhjU 14 539 5.8E-237 T 10-10-2018 IPR017744 Cellulose biosynthesis protein BcsG VF_A0887 52ba44045d4f53b13d76c687e56f0660 542 Pfam PF11658 Cellulose biosynthesis protein BcsG 16 536 2.5E-214 T 10-10-2018 IPR017744 Cellulose biosynthesis protein BcsG VF_A0618 69373ad095e7c1170f9f60b66d81075f 446 Pfam PF07670 Nucleoside recognition 132 225 9.1E-7 T 10-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VF_0170 b52ab09e4fc82f4e457e5195da29d94f 417 Pfam PF01943 Polysaccharide biosynthesis protein 11 278 4.7E-36 T 10-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 VF_A0844 01c7787d7ca74aa06b1a2c7e6d3773ba 383 Gene3D G3DSA:2.40.160.60 23 383 3.1E-75 T 10-10-2018 VF_A0844 01c7787d7ca74aa06b1a2c7e6d3773ba 383 SUPERFAMILY SSF56935 23 382 4.94E-70 T 10-10-2018 VF_A0844 01c7787d7ca74aa06b1a2c7e6d3773ba 383 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 14 373 7.4E-52 T 10-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VF_B0041 a5d2d49270ad142b97112252b950de60 302 TIGRFAM TIGR02781 VirB9: P-type conjugative transfer protein VirB9 7 276 1.3E-85 T 10-10-2018 IPR014148 P-type conjugative transfer protein VirB9 VF_B0041 a5d2d49270ad142b97112252b950de60 302 Pfam PF03524 Conjugal transfer protein 30 274 2.3E-61 T 10-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX VF_B0041 a5d2d49270ad142b97112252b950de60 302 Gene3D G3DSA:2.60.40.2500 167 301 9.2E-40 T 10-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily VF_A0521 f8754b8297ae549ef1ddf5720a4f6cf2 147 Gene3D G3DSA:3.10.450.430 3 145 2.7E-36 T 10-10-2018 VF_A0521 f8754b8297ae549ef1ddf5720a4f6cf2 147 Pfam PF10980 Protein of unknown function (DUF2787) 17 142 1.8E-39 T 10-10-2018 IPR021248 Protein of unknown function DUF2787 VF_0640 03967fe7f5be2c0cacfffb273b009751 211 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 9 118 1.0E-58 T 10-10-2018 IPR013559 YheO-like VF_0640 03967fe7f5be2c0cacfffb273b009751 211 Pfam PF08348 YheO-like PAS domain 13 118 3.6E-36 T 10-10-2018 IPR013559 YheO-like VF_0640 03967fe7f5be2c0cacfffb273b009751 211 Pfam PF13309 HTH domain 152 208 4.3E-14 T 10-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain VF_1751 0d3a5557c6b3ef0c49a58373899dfaa2 711 Pfam PF05170 AsmA family 3 597 3.2E-79 T 10-10-2018 IPR007844 AsmA VF_B0030 22f1e7ebdb71f21e6087f3a36cbb97e5 338 Gene3D G3DSA:1.20.81.30 1 112 2.8E-6 T 10-10-2018 VF_1332 f33c5a0303c80bfb5818a39d003e4479 447 TIGRFAM TIGR00797 matE: MATE efflux family protein 10 413 3.4E-52 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_1332 f33c5a0303c80bfb5818a39d003e4479 447 Pfam PF01554 MatE 10 175 4.7E-20 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_1332 f33c5a0303c80bfb5818a39d003e4479 447 Pfam PF01554 MatE 238 401 4.4E-22 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VF_A0807 c381b35b459b1b0f98048afbdfe972ec 217 Pfam PF02698 DUF218 domain 26 147 1.8E-21 T 10-10-2018 IPR003848 Domain of unknown function DUF218 VF_A0807 c381b35b459b1b0f98048afbdfe972ec 217 Gene3D G3DSA:3.40.50.620 16 153 3.4E-26 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VF_1365 e7f9f5242d7cdd0d2a0eda9d15f892b5 152 Pfam PF11749 Protein of unknown function (DUF3305) 15 139 3.3E-25 T 10-10-2018 IPR021736 Protein of unknown function DUF3305 VF_0147 a1dd68cb536c98defc1fecd74d95868b 229 Pfam PF02348 Cytidylyltransferase 6 141 6.8E-20 T 10-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 VF_0147 a1dd68cb536c98defc1fecd74d95868b 229 Gene3D G3DSA:3.90.550.10 2 228 8.7E-59 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0147 a1dd68cb536c98defc1fecd74d95868b 229 SUPERFAMILY SSF53448 1 227 5.86E-55 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_2015 855379b888e1558e0b3c175ce311df2f 313 Pfam PF04860 Phage portal protein 59 290 1.5E-15 T 10-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein VF_2015 855379b888e1558e0b3c175ce311df2f 313 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 18 293 7.4E-54 T 10-10-2018 IPR006430 Phage portal protein PBSX family VF_2217 6b7dcb712565057bb7b18599792458ca 245 Pfam PF02167 Cytochrome C1 family 34 244 6.8E-17 T 10-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 VF_2217 6b7dcb712565057bb7b18599792458ca 245 Gene3D G3DSA:1.10.760.10 26 210 1.0E-17 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_2217 6b7dcb712565057bb7b18599792458ca 245 SUPERFAMILY SSF46626 15 208 2.29E-49 T 10-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VF_1080 518476ff9b7d53b263ff25d74b66d05f 157 Pfam PF09900 Predicted membrane protein (DUF2127) 7 143 7.4E-43 T 10-10-2018 IPR021125 Protein of unknown function DUF2127 VF_1097 0ae5eb58dd753efaf32beb833b711d87 302 Gene3D G3DSA:1.10.530.10 147 286 2.1E-11 T 10-10-2018 VF_1097 0ae5eb58dd753efaf32beb833b711d87 302 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 157 281 1.8E-10 T 10-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 VF_1424 8aaf7dfa0dd28bf23121cd94616d1527 312 Pfam PF01882 Protein of unknown function DUF58 51 136 4.6E-19 T 10-10-2018 IPR002881 Domain of unknown function DUF58 VF_1424 8aaf7dfa0dd28bf23121cd94616d1527 312 SUPERFAMILY SSF53300 87 221 2.19E-5 T 10-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VF_A0562 f05b37a0d8f629a7278b9ea6553347b6 302 Pfam PF11060 Protein of unknown function (DUF2861) 27 291 2.3E-84 T 10-10-2018 IPR021290 Protein of unknown function DUF2861 VF_1493 7661c7153a1e799191219267aa32ff6e 127 Gene3D G3DSA:3.40.50.300 23 122 9.3E-7 T 10-10-2018 VF_1493 7661c7153a1e799191219267aa32ff6e 127 SUPERFAMILY SSF52540 26 119 2.02E-15 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2061 ce238654ad3e68e8ad747aef366910d2 141 Pfam PF04143 Sulphur transport 87 136 1.6E-6 T 10-10-2018 IPR007272 Sulphur transport domain VF_0458 093d59ff5b21e9550606532f329f3eb5 267 Pfam PF01925 Sulfite exporter TauE/SafE 13 264 7.6E-50 T 10-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 VF_1813 63bb8ad794f25ba0a3b77e0515145d26 432 Gene3D G3DSA:2.40.160.60 28 432 1.1E-120 T 10-10-2018 VF_1813 63bb8ad794f25ba0a3b77e0515145d26 432 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 19 432 3.2E-126 T 10-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VF_1813 63bb8ad794f25ba0a3b77e0515145d26 432 SUPERFAMILY SSF56935 28 432 2.29E-100 T 10-10-2018 VF_A0339 ca63b434c8390e6ec2ab4f39e5247940 331 SUPERFAMILY SSF56935 23 301 1.92E-11 T 10-10-2018 VF_A0093 47803ea0fe501582cc0ca84c2257329e 456 Pfam PF00860 Permease family 34 416 2.1E-71 T 10-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 VF_1230 80428ee04ded9b68c5f77d86fc90ec95 284 Pfam PF13503 Domain of unknown function (DUF4123) 18 134 4.6E-15 T 10-10-2018 IPR025391 Domain of unknown function DUF4123 VF_0775 f935f58e19a256ded4d34a922f1ba661 109 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 5 108 2.4E-35 T 10-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 VF_0775 f935f58e19a256ded4d34a922f1ba661 109 SUPERFAMILY SSF50022 4 108 3.22E-37 T 10-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VF_0775 f935f58e19a256ded4d34a922f1ba661 109 Gene3D G3DSA:2.102.10.10 2 109 6.0E-35 T 10-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VF_0775 f935f58e19a256ded4d34a922f1ba661 109 Pfam PF13806 Rieske-like [2Fe-2S] domain 5 107 2.8E-41 T 10-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 VF_2215 df0ec8506309735371a5aed5f412c1c0 154 SUPERFAMILY SSF101738 4 120 6.15E-50 T 10-10-2018 IPR036760 SspB-like superfamily VF_2215 df0ec8506309735371a5aed5f412c1c0 154 PIRSF PIRSF005276 3 154 9.6E-62 T 10-10-2018 IPR007481 Stringent starvation protein B VF_2215 df0ec8506309735371a5aed5f412c1c0 154 Gene3D G3DSA:2.30.30.220 3 138 2.4E-52 T 10-10-2018 IPR036760 SspB-like superfamily VF_2215 df0ec8506309735371a5aed5f412c1c0 154 Pfam PF04386 Stringent starvation protein B 9 154 4.0E-43 T 10-10-2018 IPR007481 Stringent starvation protein B VF_1098 6ba61ffaafb4db5e4a5b681abcff2c80 179 Gene3D G3DSA:2.40.100.10 12 177 3.8E-62 T 10-10-2018 IPR029000 Cyclophilin-like domain superfamily VF_1098 6ba61ffaafb4db5e4a5b681abcff2c80 179 SUPERFAMILY SSF50891 16 176 5.41E-55 T 10-10-2018 IPR029000 Cyclophilin-like domain superfamily VF_1098 6ba61ffaafb4db5e4a5b681abcff2c80 179 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 29 44 8.9E-10 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VF_1098 6ba61ffaafb4db5e4a5b681abcff2c80 179 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 55 67 8.9E-10 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VF_1098 6ba61ffaafb4db5e4a5b681abcff2c80 179 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 8.9E-10 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VF_1098 6ba61ffaafb4db5e4a5b681abcff2c80 179 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 50 67 - T 10-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 VF_1098 6ba61ffaafb4db5e4a5b681abcff2c80 179 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 16 175 1.0E-46 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 3730 3819 7.5E-6 T 10-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 3869 3966 2.6E-6 T 10-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 955 1061 2.9E-19 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2139 2240 1.9E-23 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 3162 3259 7.5E-15 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 198 299 2.1E-18 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2526 2608 1.7E-8 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1818 1920 4.3E-18 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1602 1704 3.6E-20 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1175 1277 8.8E-16 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1068 1170 2.4E-22 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 3377 3488 6.4E-13 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2838 2935 6.4E-22 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2258 2345 1.9E-13 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1495 1597 9.6E-21 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 632 728 8.4E-21 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 525 627 2.9E-21 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 3059 3153 5.3E-15 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1927 2027 3.0E-24 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2630 2719 3.7E-14 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1282 1383 3.1E-22 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 3271 3371 4.4E-12 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1391 1489 5.6E-16 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 3495 3591 9.0E-12 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2032 2133 1.3E-22 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2401 2482 8.1E-13 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 312 410 7.2E-23 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 740 842 5.5E-21 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 416 513 4.0E-23 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 3598 3683 3.8E-10 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1710 1809 4.9E-24 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 847 950 2.6E-21 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2729 2831 1.6E-18 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2941 3042 2.1E-19 T 10-10-2018 IPR010221 VCBS repeat VF_1506 ac5aa14e00d6e52952840b0214d9185b 3971 SUPERFAMILY SSF51120 3825 3944 1.33E-6 T 10-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VF_0291 82d9082b4e88cb9b618dd416f41b0f41 259 Pfam PF04784 Protein of unknown function, DUF547 87 198 4.0E-24 T 10-10-2018 IPR006869 Domain of unknown function DUF547 VF_A0098 a79d7e25c629d923f433e94fbdfaa800 225 Pfam PF09335 SNARE associated Golgi protein 62 178 1.3E-26 T 10-10-2018 IPR032816 SNARE associated Golgi protein VF_0397 85345c2024ca0b1d01763ccc4ed70055 213 Pfam PF05494 MlaC protein 35 200 1.7E-48 T 10-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC VF_0397 85345c2024ca0b1d01763ccc4ed70055 213 Gene3D G3DSA:3.10.450.710 25 205 2.0E-42 T 10-10-2018 VF_0397 85345c2024ca0b1d01763ccc4ed70055 213 PIRSF PIRSF004649 1 213 2.6E-59 T 10-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC VF_1008 64cb78b46bb22dfbc4b82a0877b6116a 256 Pfam PF01925 Sulfite exporter TauE/SafE 14 250 2.0E-44 T 10-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 VF_0461 092d72dcaf8eea1138003b1df8001b48 381 Pfam PF02690 Na+/Pi-cotransporter 29 150 1.0E-21 T 10-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 VF_0461 092d72dcaf8eea1138003b1df8001b48 381 Pfam PF02690 Na+/Pi-cotransporter 216 327 1.0E-19 T 10-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 VF_1057 89f2392e623bc658ba295a1687241e22 211 Pfam PF01810 LysE type translocator 16 205 1.3E-26 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_1057 89f2392e623bc658ba295a1687241e22 211 PIRSF PIRSF006324 1 209 2.2E-53 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_1604 aa51f4af508fd0dbe7bcac77b16acc2d 132 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 3 130 25.897 T 10-10-2018 IPR023006 Uncharacterised protein family UPF0225 VF_1604 aa51f4af508fd0dbe7bcac77b16acc2d 132 Gene3D G3DSA:3.10.450.50 1 132 4.8E-37 T 10-10-2018 VF_1604 aa51f4af508fd0dbe7bcac77b16acc2d 132 SUPERFAMILY SSF54427 28 131 1.31E-31 T 10-10-2018 IPR032710 NTF2-like domain superfamily VF_1473 b26661cf2add847df3de2e1b40f921f7 91 Pfam PF11280 Protein of unknown function (DUF3081) 5 80 3.9E-28 T 10-10-2018 IPR021432 Protein of unknown function DUF3081 VF_0214 66a499422b50855af49bb8c39fa48c0b 289 PRINTS PR00478 Phosphoribulokinase family signature 164 181 3.7E-27 T 10-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 VF_0214 66a499422b50855af49bb8c39fa48c0b 289 PRINTS PR00478 Phosphoribulokinase family signature 12 29 3.7E-27 T 10-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 VF_0214 66a499422b50855af49bb8c39fa48c0b 289 PRINTS PR00478 Phosphoribulokinase family signature 182 205 3.7E-27 T 10-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 VF_0214 66a499422b50855af49bb8c39fa48c0b 289 PRINTS PR00478 Phosphoribulokinase family signature 126 144 3.7E-27 T 10-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 VF_0214 66a499422b50855af49bb8c39fa48c0b 289 SUPERFAMILY SSF52540 4 286 1.66E-47 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_0214 66a499422b50855af49bb8c39fa48c0b 289 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 214 9.9E-70 T 10-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 VF_0214 66a499422b50855af49bb8c39fa48c0b 289 Gene3D G3DSA:3.40.50.300 1 289 1.2E-111 T 10-10-2018 VF_1257 a783ae4a1bccf6e89ebda4e538f52466 664 SUPERFAMILY SSF50985 168 536 1.22E-21 T 10-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II VF_1257 a783ae4a1bccf6e89ebda4e538f52466 664 Gene3D G3DSA:2.130.10.30 134 408 2.4E-10 T 10-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II VF_A0780 bc6a51f1d1aa6bfde0eb2879cd4367d0 253 PIRSF PIRSF028069 1 253 6.9E-108 T 10-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 VF_A0780 bc6a51f1d1aa6bfde0eb2879cd4367d0 253 Pfam PF11932 Protein of unknown function (DUF3450) 6 246 4.7E-85 T 10-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 VF_0639 0973df87ebc24a5afd201cd205bbb5a6 519 Pfam PF03806 AbgT putative transporter family 17 515 2.0E-210 T 10-10-2018 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 VF_A0599 6c13d7ba66d99a6a3c851b8921640a8a 220 SUPERFAMILY SSF51215 30 107 5.23E-6 T 10-10-2018 IPR037923 Transcription regulator HTH-like VF_A0950 2d4820f592f073a099422f18de5573c5 424 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 27 132 1.4E-4 T 10-10-2018 IPR018712 Domain of unknown function DUF2235 VF_A0950 2d4820f592f073a099422f18de5573c5 424 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 145 236 1.9E-11 T 10-10-2018 IPR018712 Domain of unknown function DUF2235 VF_0898 ce826bf04a1f3b97c1c3774399297740 433 Pfam PF06097 Bacterial protein of unknown function (DUF945) 5 422 9.1E-37 T 10-10-2018 IPR010352 Protein of unknown function DUF945 VF_1846 6fb9d5a047e57a9f3f65c1cb003c0310 161 Pfam PF03748 Flagellar basal body-associated protein FliL 60 161 3.1E-20 T 10-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 VF_1177 be092b2e1e3ab1c9fa0cb3b10c3cc374 419 Pfam PF03222 Tryptophan/tyrosine permease family 30 385 1.6E-16 T 10-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 VF_A0638 0721e0a5c62fa03a1d81130689e33ee1 209 Pfam PF01810 LysE type translocator 18 208 9.5E-26 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_0174 b98bb8cc8181ed6488ec817fca68ddba 330 SUPERFAMILY SSF53448 5 227 1.79E-47 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0174 b98bb8cc8181ed6488ec817fca68ddba 330 Gene3D G3DSA:3.90.550.10 1 255 6.1E-42 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VF_0174 b98bb8cc8181ed6488ec817fca68ddba 330 Pfam PF00535 Glycosyl transferase family 2 8 160 3.7E-25 T 10-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VF_A0536 8fd133529183462b1d18f60b1a0375ac 623 Pfam PF03235 Protein of unknown function DUF262 16 263 5.2E-26 T 10-10-2018 IPR004919 Domain of unknown function DUF262 VF_1646 30a01a7c94fb09e2beea1759ab0ac8ee 478 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 7 457 5.7E-159 T 10-10-2018 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 VF_1646 30a01a7c94fb09e2beea1759ab0ac8ee 478 Pfam PF03553 Na+/H+ antiporter family 161 453 1.3E-64 T 10-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 VF_1822 c4680566d1baa8ebca83286b296adf28 250 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 228 2.0E-85 T 10-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1822 c4680566d1baa8ebca83286b296adf28 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 8.8E-64 T 10-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1822 c4680566d1baa8ebca83286b296adf28 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 8.8E-64 T 10-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1822 c4680566d1baa8ebca83286b296adf28 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 8.8E-64 T 10-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1822 c4680566d1baa8ebca83286b296adf28 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 204 228 8.8E-64 T 10-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1822 c4680566d1baa8ebca83286b296adf28 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 8.8E-64 T 10-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1822 c4680566d1baa8ebca83286b296adf28 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 8.8E-64 T 10-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VF_1822 c4680566d1baa8ebca83286b296adf28 250 Pfam PF01578 Cytochrome C assembly protein 28 184 3.7E-33 T 10-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 VF_0668 5aec49c447af0674347d6de8b1b87d54 505 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 38 441 2.4E-70 T 10-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VF_0668 5aec49c447af0674347d6de8b1b87d54 505 Gene3D G3DSA:1.20.1730.10 26 504 4.9E-114 T 10-10-2018 IPR038377 Sodium/glucose symporter superfamily VF_0668 5aec49c447af0674347d6de8b1b87d54 505 Pfam PF00474 Sodium:solute symporter family 38 440 2.3E-44 T 10-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VF_A0982 36a2433dbae8f2d5a594b773f4a3c469 283 ProDom PD104924 XAC1607 AF0417 6 188 1.0E-105 T 10-10-2018 VF_A0982 36a2433dbae8f2d5a594b773f4a3c469 283 Pfam PF11655 Protein of unknown function (DUF2589) 14 183 5.4E-51 T 10-10-2018 IPR024510 Protein of unknown function DUF2589 VF_1276 beec525d2bc9efe50813f62686b7558b 408 Pfam PF04403 Paraquat-inducible protein A 246 402 1.2E-47 T 10-10-2018 IPR007498 Intermembrane transport protein PqiA-like VF_1276 beec525d2bc9efe50813f62686b7558b 408 Pfam PF04403 Paraquat-inducible protein A 46 197 4.4E-35 T 10-10-2018 IPR007498 Intermembrane transport protein PqiA-like VF_1276 beec525d2bc9efe50813f62686b7558b 408 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 3 400 3.8E-106 T 10-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type VF_1562 5f9e0b6365682d1e9d9b6071fafed5ec 446 Pfam PF06629 MltA-interacting protein MipA 49 249 3.9E-20 T 10-10-2018 IPR010583 MltA-interacting MipA VF_A1057 118f54bc5383401d8a0ac27e330b2baf 620 SUPERFAMILY SSF63829 286 590 8.5E-16 T 10-10-2018 VF_A1057 118f54bc5383401d8a0ac27e330b2baf 620 Pfam PF05787 Bacterial protein of unknown function (DUF839) 56 592 1.3E-199 T 10-10-2018 IPR008557 Protein of unknown function DUF839 VF_1728 3ecafa7d80d9050939d7163540334e5a 256 SUPERFAMILY SSF81301 66 215 3.43E-13 T 10-10-2018 VF_1728 3ecafa7d80d9050939d7163540334e5a 256 Gene3D G3DSA:3.30.460.10 54 192 1.5E-6 T 10-10-2018 VF_A1145 7152c646e87e35d1e28c3c25554503de 159 SUPERFAMILY SSF55729 47 102 1.92E-5 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase VF_A1145 7152c646e87e35d1e28c3c25554503de 159 Gene3D G3DSA:3.40.630.30 1 124 9.0E-8 T 10-10-2018 VF_2630 b48af8483ae541b3dd9ea43f9d02c08f 64 Pfam PF14056 Domain of unknown function (DUF4250) 12 61 5.8E-18 T 10-10-2018 IPR025346 Protein of unknown function DUF4250 VF_1466 1dd854f9f12be2ddf38c0f5d7e04e3ef 140 Pfam PF00011 Hsp20/alpha crystallin family 44 139 5.2E-17 T 10-10-2018 IPR002068 Alpha crystallin/Hsp20 domain VF_1466 1dd854f9f12be2ddf38c0f5d7e04e3ef 140 Gene3D G3DSA:2.60.40.790 35 139 3.7E-21 T 10-10-2018 IPR008978 HSP20-like chaperone VF_1466 1dd854f9f12be2ddf38c0f5d7e04e3ef 140 SUPERFAMILY SSF49764 33 139 1.71E-18 T 10-10-2018 IPR008978 HSP20-like chaperone VF_A0471 757b058107a2dce1defebd680fb8a986 221 Pfam PF09335 SNARE associated Golgi protein 49 174 2.2E-15 T 10-10-2018 IPR032816 SNARE associated Golgi protein VF_B0044 d80996cc57c577ca1268dd7b5b7782cb 608 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 66 523 1.4E-109 T 10-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 VF_B0044 d80996cc57c577ca1268dd7b5b7782cb 608 Gene3D G3DSA:3.40.50.300 270 513 2.0E-41 T 10-10-2018 VF_B0044 d80996cc57c577ca1268dd7b5b7782cb 608 SUPERFAMILY SSF52540 60 516 1.81E-56 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_1109 7c1e16c617bb636cd7bf30deccb0e12d 394 SUPERFAMILY SSF56935 29 394 5.13E-6 T 10-10-2018 VF_0351 30915e4eb9b893cdea36a89fb571d296 438 Pfam PF10082 Putative beta-barrel porin 2 45 417 9.9E-10 T 10-10-2018 IPR018759 Putative beta-barrel porin 2 VF_2319 681541c411957ee2442219e1e2162df7 61 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 5 58 2.6E-23 T 10-10-2018 IPR019201 Protein of unknown function DUF2065 VF_A0001 042aa64c4bb2de0893337c6bb1659fd0 661 Pfam PF11826 Protein of unknown function (DUF3346) 295 519 1.4E-147 T 10-10-2018 IPR021781 Protein of unknown function DUF3346 VF_1224 993b91a29f95892ae6fdd031166dd8af 227 Pfam PF01618 MotA/TolQ/ExbB proton channel family 101 194 9.2E-22 T 10-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VF_1250 45eb5c3cf693bdbf2586ba8d76196dca 429 Pfam PF03606 C4-dicarboxylate anaerobic carrier 51 426 2.7E-31 T 10-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 VF_0754 7ce88a13e44107438226427417590d7c 160 Pfam PF07295 Zinc-ribbon containing domain 14 156 6.4E-52 T 10-10-2018 IPR009912 Zinc-ribbon containing domain VF_1290 8a191a70e5aab3534b0f1a9d2c7a8b2c 545 Pfam PF11949 Protein of unknown function (DUF3466) 264 542 7.9E-54 T 10-10-2018 IPR022562 Protein of unknown function DUF3466 VF_1290 8a191a70e5aab3534b0f1a9d2c7a8b2c 545 Pfam PF11949 Protein of unknown function (DUF3466) 4 175 1.9E-9 T 10-10-2018 IPR022562 Protein of unknown function DUF3466 VF_1924 7e9a151fc1c8ced9f580035e59fdf685 142 Pfam PF09842 Predicted membrane protein (DUF2069) 16 118 2.3E-31 T 10-10-2018 IPR018643 Protein of unknown function DUF2069, membrane VF_A1037 98ffe30e8152ee78039b63ae462a7837 214 Pfam PF02397 Bacterial sugar transferase 16 209 7.8E-61 T 10-10-2018 IPR003362 Bacterial sugar transferase VF_1957 7decaa655f7894bb822ed607298ee270 259 Pfam PF01148 Cytidylyltransferase family 7 257 1.1E-63 T 10-10-2018 VF_1957 7decaa655f7894bb822ed607298ee270 259 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 218 244 - T 10-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 VF_0592 2d8c8c0d6b9a806ee429d68293d4bb69 128 Pfam PF04241 Protein of unknown function (DUF423) 20 106 5.1E-30 T 10-10-2018 IPR006696 Protein of unknown function DUF423 VF_A0411 ca43f8aa288fa62625ffe1a2b3e1402a 304 SUPERFAMILY SSF51430 4 295 4.19E-67 T 10-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VF_A0411 ca43f8aa288fa62625ffe1a2b3e1402a 304 Gene3D G3DSA:3.20.20.100 1 304 7.2E-95 T 10-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VF_A0411 ca43f8aa288fa62625ffe1a2b3e1402a 304 Pfam PF00248 Aldo/keto reductase family 16 293 4.2E-56 T 10-10-2018 IPR023210 NADP-dependent oxidoreductase domain VF_0508 332c44fddd46eb45443d650540239ad2 198 Pfam PF10144 Bacterial virulence factor haemolysin 6 148 9.1E-31 T 10-10-2018 IPR019305 Uncharacterised protein family Smp VF_1567 e9b05b889f095946c3710cc9bb19e3f9 722 SUPERFAMILY SSF82171 436 711 2.39E-10 T 10-10-2018 VF_1075 81e01f430dffb2c84999cea5c53ebd96 200 Pfam PF01810 LysE type translocator 13 194 7.1E-20 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VF_2409 5f625ebf7840fa20a00a3d8f0fab35df 189 Pfam PF07012 Curlin associated repeat 105 138 4.2E-8 T 10-10-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 VF_2409 5f625ebf7840fa20a00a3d8f0fab35df 189 Pfam PF07012 Curlin associated repeat 83 116 4.0E-8 T 10-10-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 VF_0200 75a67588a8a042381dbb72972d3dc883 317 SUPERFAMILY SSF64182 5 314 4.32E-46 T 10-10-2018 IPR038763 DHH phosphoesterase superfamily VF_1829 78cc30784e04552d42303a2ea88623e2 255 Gene3D G3DSA:3.40.50.300 1 254 2.6E-66 T 10-10-2018 VF_1829 78cc30784e04552d42303a2ea88623e2 255 Pfam PF13614 AAA domain 3 174 8.3E-50 T 10-10-2018 IPR025669 AAA domain VF_1829 78cc30784e04552d42303a2ea88623e2 255 SUPERFAMILY SSF52540 1 253 1.03E-55 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VF_2406 cf99ba1d681ee0a9c28b2e45bce80ec0 133 Pfam PF10614 Type VIII secretion system (T8SS), CsgF protein 7 128 4.6E-25 T 10-10-2018 IPR018893 Type VIII secretion system, CsgF VF_1192 f932a3af257fba1f8595d268fff1d897 336 Gene3D G3DSA:1.20.1420.20 19 336 9.9E-68 T 10-10-2018 IPR038352 Imelysin-like domain superfamily VF_1192 f932a3af257fba1f8595d268fff1d897 336 Pfam PF09375 Imelysin 39 314 1.3E-44 T 10-10-2018 IPR018976 Imelysin-like domain VF_A1158 b33d168f0a513f1524b46d266eeef03b 546 Pfam PF03961 Flagellar Assembly Protein A 83 536 8.1E-120 T 10-10-2018 IPR005646 Flagellar assembly protein A VF_0770 d12211c6d86916fbe3c2ab7e429277b4 127 PIRSF PIRSF005610 1 121 8.4E-17 T 10-10-2018 IPR007360 Invasion gene expression up-regulator, SirB VF_0770 d12211c6d86916fbe3c2ab7e429277b4 127 Pfam PF04247 Invasion gene expression up-regulator, SirB 2 123 3.8E-38 T 10-10-2018 IPR007360 Invasion gene expression up-regulator, SirB VF_A1154 d540b4dca1b10ae3da4829b5159691a5 118 Gene3D G3DSA:3.30.1370.150 59 118 4.1E-33 T 10-10-2018 VF_A1154 d540b4dca1b10ae3da4829b5159691a5 118 Pfam PF10928 Protein of unknown function (DUF2810) 64 116 3.2E-34 T 10-10-2018 IPR021230 Protein of unknown function DUF2810 VF_1185 d28e9ba05e0219d1a5133393c35fdead 128 Pfam PF11042 Protein of unknown function (DUF2750) 22 121 2.3E-36 T 10-10-2018 IPR021284 Protein of unknown function DUF2750 VF_1139 4c574b1488511162bc261c86e8a1e29f 140 Pfam PF04320 Protein with unknown function (DUF469) 39 139 6.8E-34 T 10-10-2018 IPR007416 Protein of unknown function DUF469 VF_2112 93a8d8667f40c7f9884839c3116176a4 175 Pfam PF01814 Hemerythrin HHE cation binding domain 3 135 7.5E-12 T 10-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 VF_2112 93a8d8667f40c7f9884839c3116176a4 175 Gene3D G3DSA:1.20.120.520 1 154 1.9E-17 T 10-10-2018 VF_A1133 eb9105aa6950f2613fd104d0ca48a687 102 Pfam PF11747 Killing trait 23 89 3.9E-29 T 10-10-2018 IPR021070 Killing trait, RebB VF_A0225 20d63334bcd24efbcf07adc94d22ba2e 303 Pfam PF00482 Type II secretion system (T2SS), protein F 164 290 1.1E-14 T 10-10-2018 IPR018076 Type II secretion system F domain VF_A0564 6d5613a58b42549d4fbdd6db85c234e7 399 Pfam PF13729 F plasmid transfer operon, TraF, protein 48 316 5.4E-72 T 10-10-2018 IPR032811 Putative conjugal transfer protein TraF-related VF_1884 3187535eff52c0f4290dd92251be237d 211 PIRSF PIRSF028688 1 211 1.3E-98 T 10-10-2018 IPR014549 Flagellar protein FlgO VF_2013 f9fffcba9b9025e7178ff3afda4b0103 270 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 5 252 6.5E-39 T 10-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 VF_1067 dc68ad1154babd2e0c73f3144697dc9b 130 Pfam PF07681 DoxX 12 87 2.5E-17 T 10-10-2018 IPR032808 DoxX family VF_0313 602e190fd74c6edd84e6026e75d28768 154 Pfam PF11075 Protein of unknown function VcgC/VcgE (DUF2780) 35 149 3.1E-30 T 10-10-2018 IPR021302 Protein of unknown function DUF2780, VcgC/VcgE VF_1497 0b49e0fda407d0368c122ca7711024bf 248 Pfam PF11101 Protein of unknown function (DUF2884) 23 246 1.6E-62 T 10-10-2018 IPR021307 Protein of unknown function DUF2884 VF_A1031 fac46b7769ead8b3c1ba9f57e13810cf 461 Pfam PF04932 O-Antigen ligase 246 381 1.7E-18 T 10-10-2018 IPR007016 O-antigen ligase-related VF_A1170 dc0971a996e628e8cda62dfdb2105067 190 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 19 83 2.5E-8 T 10-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 VF_A1170 dc0971a996e628e8cda62dfdb2105067 190 Gene3D G3DSA:1.10.3420.10 3 90 2.0E-5 T 10-10-2018 IPR023292 NTP pyrophosphohydrolase-like domain superfamily VF_1423 54d2476fc6a73341b204f0b8b16c82e0 179 Pfam PF14316 Domain of unknown function (DUF4381) 14 159 4.1E-25 T 10-10-2018 IPR025489 Protein of unknown function (DUF4381 VF_1205 2f938f875aee803aeb2d6039bf4794cd 235 Pfam PF12119 Protein of unknown function (DUF3581) 1 216 3.3E-98 T 10-10-2018 IPR021974 Protein of unknown function DUF3581 VF_A0587 a1efef586798a5d0c7c603e255ae133c 91 Pfam PF10115 Transcriptional activator HlyU 2 90 6.1E-35 T 10-10-2018 IPR018772 Transcription activator HlyU VF_A0294 77e22d5830292a653117bbfa5b7acffd 58 Pfam PF11661 Protein of unknown function (DUF2986) 1 43 2.5E-16 T 10-10-2018 IPR021677 Protein of unknown function DUF2986 VF_A0055 b8003847345f2f3378d3574a2333d2a2 180 Pfam PF11188 Protein of unknown function (DUF2975) 68 180 1.3E-15 T 10-10-2018 IPR021354 Protein of unknown function DUF2975 VF_A0717 a15e9dd7e130f33425e6d6f28879ccfb 400 SUPERFAMILY SSF69304 117 305 1.03E-12 T 10-10-2018 VF_A0717 a15e9dd7e130f33425e6d6f28879ccfb 400 Gene3D G3DSA:2.120.10.30 109 337 8.4E-8 T 10-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like VF_0580 a0548a0833d08f30036c8ea435f98b6c 329 Gene3D G3DSA:1.50.10.150 5 314 1.6E-43 T 10-10-2018 IPR038665 Voltage-dependent anion channel superfamily VF_0580 a0548a0833d08f30036c8ea435f98b6c 329 Pfam PF03595 Voltage-dependent anion channel 18 307 2.4E-30 T 10-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 VF_1934 489b3866e6f83ff29649ef1f57c47c94 420 TIGRFAM TIGR03503 TIGR03503: TIGR03503 family protein 20 397 6.7E-152 T 10-10-2018 IPR020010 Conserved hypothetical protein CHP03503 VF_A0218 439d29c1fd1f95e218335af5d1c5814e 72 Pfam PF04964 Flp/Fap pilin component 16 60 6.2E-11 T 10-10-2018 IPR007047 Flp/Fap pilin component VF_1536 cef6e6b2f115985d31c3c89798e50e82 220 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 19 214 3.4E-41 T 10-10-2018 IPR006214 Bax inhibitor 1-related VF_1536 cef6e6b2f115985d31c3c89798e50e82 220 ProSitePatterns PS01243 Bax inhibitor-1 family signature. 88 118 - T 10-10-2018 IPR006213 Bax inhibitor 1, conserved site GO:0016021|GO:0043066 VF_A0131 7c8b03b49b7fcbe0ad741c3f7084be99 275 Pfam PF02517 CAAX protease self-immunity 173 264 7.2E-18 T 10-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 VF_1438 e9c21306a881fb42cdd924e33088ddf2 150 SUPERFAMILY SSF69318 40 116 5.62E-6 T 10-10-2018 VF_A0952 f48115959f42bb0dad52559a36b91da7 266 Pfam PF13503 Domain of unknown function (DUF4123) 6 118 8.6E-19 T 10-10-2018 IPR025391 Domain of unknown function DUF4123 VF_A0778 c5ac8ad0de8993ecdc97e44f98ccd6c0 177 Pfam PF01618 MotA/TolQ/ExbB proton channel family 66 169 4.3E-21 T 10-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VF_1661 8210d294297237b8cc34babd49f7e7dd 83 Pfam PF03692 Putative zinc- or iron-chelating domain 2 60 1.7E-6 T 10-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein VF_A0964 98e6dfe51aafc8d9242b08556ecda86f 189 Pfam PF01169 Uncharacterized protein family UPF0016 107 181 9.0E-21 T 10-10-2018 IPR001727 Gdt1 family VF_A0964 98e6dfe51aafc8d9242b08556ecda86f 189 Pfam PF01169 Uncharacterized protein family UPF0016 11 84 9.2E-19 T 10-10-2018 IPR001727 Gdt1 family VF_1516 ecf1096231e3f3e79254ef9dfd24d3b1 210 Pfam PF10816 Domain of unknown function (DUF2760) 87 209 1.2E-54 T 10-10-2018 IPR021212 Domain of unknown function DUF2760 VF_A0572 fbde850e0ca31f270883c291d2851764 116 Pfam PF11782 Protein of unknown function (DUF3319) 1 91 1.0E-39 T 10-10-2018 IPR021753 Protein of unknown function DUF3319 VF_0722 737fc732bcca7b79fb0339863502bfe7 189 Pfam PF03923 Uncharacterized lipoprotein 28 186 9.8E-50 T 10-10-2018 IPR005619 Uncharacterised protein family, YajG VF_1273 5f49d8c014920cd17b8fac621634dbcb 392 Pfam PF06738 Putative threonine/serine exporter 10 233 9.8E-25 T 10-10-2018 IPR010619 Putative threonine/serine exporter VF_1273 5f49d8c014920cd17b8fac621634dbcb 392 Pfam PF12821 Threonine/Serine exporter, ThrE 258 380 7.9E-8 T 10-10-2018 IPR024528 Threonine/Serine exporter, ThrE VF_2130 1907d1aef5103995e04893397cb22f0b 203 Pfam PF03458 UPF0126 domain 5 78 4.2E-21 T 10-10-2018 IPR005115 Uncharacterised domain UPF0126 VF_2130 1907d1aef5103995e04893397cb22f0b 203 Pfam PF03458 UPF0126 domain 92 161 1.3E-21 T 10-10-2018 IPR005115 Uncharacterised domain UPF0126 VF_0308 2e6d99e9e5a728ef9699c5cd2665af96 233 TIGRFAM TIGR04219 OMP_w_GlyGly: outer membrane protein 9 233 1.0E-47 T 10-10-2018 IPR026387 Outer membrane protein VF_A1011 bcd81cb9f3690d69fd77060dd613c940 159 Pfam PF06496 Protein of unknown function (DUF1097) 8 140 5.9E-36 T 10-10-2018 IPR009476 Protein of unknown function DUF1097 VF_2437 bd65a91a4340c2949be70dc21e5f482a 124 Pfam PF07226 Protein of unknown function (DUF1422) 4 116 3.2E-48 T 10-10-2018 IPR009867 Protein of unknown function DUF1422 VF_2437 bd65a91a4340c2949be70dc21e5f482a 124 ProDom PD076479 MEMBRANE INNER YIJD TRANSMEMBRANE Y0323 AAA SIMILAR A ACETYL-COENZYME VV0128 4 112 1.0E-57 T 10-10-2018 IPR009867 Protein of unknown function DUF1422 VF_2066 02a1158435258d6fdf61461f61f326c9 187 Pfam PF10063 Uncharacterized integral membrane protein (DUF2301) 93 185 3.1E-8 T 10-10-2018 IPR019275 Protein of unknown function DUF2301 VF_2240 b5a385b35c20ec9f0c146139d3b78a79 426 Pfam PF01384 Phosphate transporter family 26 411 2.1E-112 T 10-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 VF_0521 999ef057f883a71a835d1e091e42a2e8 182 Pfam PF16964 Putative tight adherence pilin protein F 5 182 3.1E-66 T 10-10-2018 IPR031582 Putative tight adherence pilin protein F VF_2040 2e68a6a2c62ad76a4b68dc5b4565a07e 116 Pfam PF14213 STAS-like domain of unknown function (DUF4325) 32 96 1.0E-17 T 10-10-2018 IPR025474 Domain of unknown function DUF4325 VF_1364 7d2cab69b191024a7b3ac53fd6967615 172 Pfam PF11748 Protein of unknown function (DUF3306) 3 105 1.5E-19 T 10-10-2018 IPR021735 Protein of unknown function DUF3306 VF_1941 b77710c3fe0e0a4e8172e42a41694143 288 Gene3D G3DSA:3.60.10.10 66 288 5.4E-18 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VF_1941 b77710c3fe0e0a4e8172e42a41694143 288 SUPERFAMILY SSF56219 67 283 1.31E-25 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VF_A0581 b5be1b370f8108792df41f7c457ee9c7 384 Pfam PF02486 Replication initiation factor 185 334 8.8E-18 T 10-10-2018 IPR003491 Replication initiation factor GO:0003677|GO:0003916|GO:0006270 VF_1394 281b8aa2fe6f212a22215d4d582aaeb2 518 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 15 490 2.5E-139 T 10-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VF_A0903 121d3c6675f69b244db92c141db48be7 176 Pfam PF14316 Domain of unknown function (DUF4381) 13 158 1.3E-23 T 10-10-2018 IPR025489 Protein of unknown function (DUF4381 VF_A0837 578cc43a18e9497fda005ee58d90f159 1017 Pfam PF05359 Domain of Unknown Function (DUF748) 611 757 4.3E-36 T 10-10-2018 IPR008023 Protein of unknown function DUF748 VF_A0837 578cc43a18e9497fda005ee58d90f159 1017 Pfam PF05359 Domain of Unknown Function (DUF748) 170 321 7.7E-13 T 10-10-2018 IPR008023 Protein of unknown function DUF748 VF_A0837 578cc43a18e9497fda005ee58d90f159 1017 Pfam PF05359 Domain of Unknown Function (DUF748) 399 549 5.5E-29 T 10-10-2018 IPR008023 Protein of unknown function DUF748 VF_2581 9dac0a375532fcf51ce720da535bec1b 379 Pfam PF04932 O-Antigen ligase 186 325 6.7E-6 T 10-10-2018 IPR007016 O-antigen ligase-related VF_2023 680896ba81ccc8626d76ca6d9e5ead04 128 Pfam PF07409 Phage protein GP46 19 126 1.8E-31 T 10-10-2018 IPR010877 Bacteriophage Mu, Gp46 VF_A0439 75e84c1417a5af5ba5d3c07085975054 394 Pfam PF05940 NnrS protein 15 388 1.5E-106 T 10-10-2018 IPR010266 NnrS VF_A0948 9d7d5ba396adf0ddf2b11eb4de2e5b18 114 Pfam PF11153 Protein of unknown function (DUF2931) 8 114 1.5E-12 T 10-10-2018 IPR021326 Protein of unknown function DUF2931 VF_0988 8893fd1b066f610f74123837e218300a 249 Pfam PF04338 Protein of unknown function, DUF481 38 249 1.4E-45 T 10-10-2018 IPR007433 Protein of unknown function DUF481 VF_0988 8893fd1b066f610f74123837e218300a 249 SUPERFAMILY SSF56935 138 206 8.42E-5 T 10-10-2018 VF_1632 f14145442ad44d3c54a009c4e61e683d 272 Pfam PF06629 MltA-interacting protein MipA 51 272 7.4E-41 T 10-10-2018 IPR010583 MltA-interacting MipA VF_A0612 a3e29e7f446ed1ebe29946e922cfd902 784 Pfam PF06934 Fatty acid cis/trans isomerase (CTI) 102 783 2.6E-287 T 10-10-2018 IPR010706 Fatty acid cis-trans isomerase VF_A0928 2d661fcc583a44598b35b40b4033390e 245 Pfam PF07670 Nucleoside recognition 85 179 1.2E-10 T 10-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936