locus-tag class description J0B03_00005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J0B03_00015 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_00015 PF12911 N-terminal TM domain of oligopeptide transport permease C J0B03_00020 PF00005 ABC transporter J0B03_00020 PF12704 MacB-like periplasmic core domain J0B03_00020 PF02687 FtsX-like permease family J0B03_00025 PF00005 ABC transporter J0B03_00040 PF00571 CBS domain J0B03_00040 PF03471 Transporter associated domain J0B03_00040 PF01595 Cyclin M transmembrane N-terminal domain J0B03_00050 PF01227 GTP cyclohydrolase I J0B03_00055 PF00809 Pterin binding enzyme J0B03_00060 PF02152 Dihydroneopterin aldolase J0B03_00065 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J0B03_00070 PF01966 HD domain J0B03_00095 PF08281 Sigma-70, region 4 J0B03_00095 PF04542 Sigma-70 region 2 J0B03_00100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J0B03_00100 PF02874 ATP synthase alpha/beta family, beta-barrel domain J0B03_00120 PF00119 ATP synthase A chain J0B03_00125 PF00137 ATP synthase subunit C J0B03_00130 PF00430 ATP synthase B/B' CF(0) J0B03_00135 PF00306 ATP synthase alpha/beta chain, C terminal domain J0B03_00135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J0B03_00135 PF02874 ATP synthase alpha/beta family, beta-barrel domain J0B03_00140 PF00231 ATP synthase J0B03_00145 PF00664 ABC transporter transmembrane region J0B03_00145 PF00005 ABC transporter J0B03_00150 PF00005 ABC transporter J0B03_00150 PF00664 ABC transporter transmembrane region J0B03_00160 PF00293 NUDIX domain J0B03_00160 PF09297 NADH pyrophosphatase zinc ribbon domain J0B03_00160 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain J0B03_00175 PF00141 Peroxidase J0B03_00195 PF03459 TOBE domain J0B03_00200 PF00871 Acetokinase family J0B03_00205 PF00501 AMP-binding enzyme J0B03_00205 PF13193 AMP-binding enzyme C-terminal domain J0B03_00225 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II J0B03_00225 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase J0B03_00225 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg J0B03_00240 PF13193 AMP-binding enzyme C-terminal domain J0B03_00240 PF00501 AMP-binding enzyme J0B03_00250 PF02001 Protein of unknown function DUF134 J0B03_00270 PF00708 Acylphosphatase J0B03_00280 PF00330 Aconitase family (aconitate hydratase) J0B03_00285 PF00694 Aconitase C-terminal domain J0B03_00295 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J0B03_00295 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg J0B03_00295 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase J0B03_00295 PF10371 Domain of unknown function J0B03_00295 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II J0B03_00300 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J0B03_00300 PF00749 tRNA synthetases class I (E and Q), catalytic domain J0B03_00305 PF16326 ABC transporter C-terminal domain J0B03_00305 PF00005 ABC transporter J0B03_00305 PF12848 ABC transporter J0B03_00310 PF10011 Predicted membrane protein (DUF2254) J0B03_00315 PF08386 TAP-like protein J0B03_00315 PF00561 alpha/beta hydrolase fold J0B03_00325 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) J0B03_00330 PF07690 Major Facilitator Superfamily J0B03_00335 PF01966 HD domain J0B03_00340 PF08448 PAS fold J0B03_00340 PF00990 Diguanylate cyclase, GGDEF domain J0B03_00360 PF04203 Sortase domain J0B03_00370 PF02578 Multi-copper polyphenol oxidoreductase laccase J0B03_00380 PF03063 Prismane/CO dehydrogenase family J0B03_00385 PF00877 NlpC/P60 family J0B03_00390 PF00474 Sodium:solute symporter family J0B03_00400 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J0B03_00400 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J0B03_00420 PF09383 NIL domain J0B03_00420 PF00005 ABC transporter J0B03_00430 PF00571 CBS domain J0B03_00430 PF00005 ABC transporter J0B03_00435 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_00440 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_00450 PF07859 alpha/beta hydrolase fold J0B03_00465 PF02965 Vitamin B12 dependent methionine synthase, activation domain J0B03_00465 PF02607 B12 binding domain J0B03_00465 PF02310 B12 binding domain J0B03_00465 PF02574 Homocysteine S-methyltransferase J0B03_00465 PF00809 Pterin binding enzyme J0B03_00470 PF01791 DeoC/LacD family aldolase J0B03_00475 PF00312 Ribosomal protein S15 J0B03_00480 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J0B03_00480 PF03725 3' exoribonuclease family, domain 2 J0B03_00480 PF01138 3' exoribonuclease family, domain 1 J0B03_00480 PF00013 KH domain J0B03_00480 PF00575 S1 RNA binding domain J0B03_00485 PF00692 dUTPase J0B03_00490 PF13840 ACT domain J0B03_00490 PF00696 Amino acid kinase family J0B03_00495 PF02673 Bacitracin resistance protein BacA J0B03_00500 PF17854 FtsK alpha domain J0B03_00500 PF09397 Ftsk gamma domain J0B03_00500 PF01580 FtsK/SpoIIIE family J0B03_00505 PF04055 Radical SAM superfamily J0B03_00505 PF00919 Uncharacterized protein family UPF0004 J0B03_00505 PF18693 TRAM domain J0B03_00510 PF01066 CDP-alcohol phosphatidyltransferase J0B03_00515 PF18146 Damage-inducible protein CinA KH domain J0B03_00515 PF00994 Probable molybdopterin binding domain J0B03_00515 PF02464 Competence-damaged protein J0B03_00520 PF00154 recA bacterial DNA recombination protein J0B03_00525 PF12072 Domain of unknown function (DUF3552) J0B03_00525 PF00013 KH domain J0B03_00525 PF01966 HD domain J0B03_00530 PF13277 YmdB-like protein J0B03_00540 PF00155 Aminotransferase class I and II J0B03_00545 PF10397 Adenylosuccinate lyase C-terminus J0B03_00545 PF00206 Lyase J0B03_00560 PF13495 Phage integrase, N-terminal SAM-like domain J0B03_00560 PF00589 Phage integrase family J0B03_00570 PF00905 Penicillin binding protein transpeptidase domain J0B03_00575 PF01098 Cell cycle protein J0B03_00585 PF01594 AI-2E family transporter J0B03_00600 PF02073 Thermophilic metalloprotease (M29) J0B03_00605 PF00753 Metallo-beta-lactamase superfamily J0B03_00610 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J0B03_00610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J0B03_00615 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J0B03_00615 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J0B03_00620 PF04199 Putative cyclase J0B03_00640 PF01965 DJ-1/PfpI family J0B03_00645 PF02446 4-alpha-glucanotransferase J0B03_00650 PF00128 Alpha amylase, catalytic domain J0B03_00650 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J0B03_00650 PF17999 Pullulanase N1-terminal domain J0B03_00655 PF00343 Carbohydrate phosphorylase J0B03_00660 PF00534 Glycosyl transferases group 1 J0B03_00660 PF08323 Starch synthase catalytic domain J0B03_00665 PF00483 Nucleotidyl transferase J0B03_00670 PF00483 Nucleotidyl transferase J0B03_00675 PF02806 Alpha amylase, C-terminal all-beta domain J0B03_00675 PF00128 Alpha amylase, catalytic domain J0B03_00675 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J0B03_00685 PF09285 Elongation factor P, C-terminal J0B03_00685 PF08207 Elongation factor P (EF-P) KOW-like domain J0B03_00685 PF01132 Elongation factor P (EF-P) OB domain J0B03_00690 PF01202 Shikimate kinase J0B03_00695 PF01487 Type I 3-dehydroquinase J0B03_00735 PF06750 Bacterial Peptidase A24 N-terminal domain J0B03_00735 PF01478 Type IV leader peptidase family J0B03_00740 PF07963 Prokaryotic N-terminal methylation motif J0B03_00760 PF00482 Type II secretion system (T2SS), protein F J0B03_00765 PF00437 Type II/IV secretion system protein J0B03_00770 PF00437 Type II/IV secretion system protein J0B03_00770 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J0B03_00775 PF02142 MGS-like domain J0B03_00780 PF01136 Peptidase family U32 J0B03_00780 PF16325 Peptidase family U32 C-terminal domain J0B03_00785 PF01596 O-methyltransferase J0B03_00790 PF06133 Control of competence regulator ComK, YlbF/YmcA J0B03_00795 PF00753 Metallo-beta-lactamase superfamily J0B03_00795 PF17770 Ribonuclease J C-terminal domain J0B03_00795 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J0B03_00800 PF01475 Ferric uptake regulator family J0B03_00805 PF06949 Protein of unknown function (DUF1292) J0B03_00810 PF03652 Holliday junction resolvase J0B03_00815 PF00248 Aldo/keto reductase family J0B03_00820 PF06135 IreB regulatory phosphoprotein J0B03_00825 PF02272 DHHA1 domain J0B03_00825 PF01411 tRNA synthetases class II (A) J0B03_00825 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J0B03_00830 PF00905 Penicillin binding protein transpeptidase domain J0B03_00830 PF00912 Transglycosylase J0B03_00840 PF02926 THUMP domain J0B03_00840 PF02568 Thiamine biosynthesis protein (ThiI) J0B03_00865 PF00692 dUTPase J0B03_00870 PF01713 Smr domain J0B03_00870 PF00488 MutS domain V J0B03_00875 PF12392 Collagenase J0B03_00875 PF01136 Peptidase family U32 J0B03_00880 PF07943 Penicillin-binding protein 5, C-terminal domain J0B03_00880 PF00768 D-alanyl-D-alanine carboxypeptidase J0B03_00885 PF00768 D-alanyl-D-alanine carboxypeptidase J0B03_00890 PF00675 Insulinase (Peptidase family M16) J0B03_00890 PF08367 Peptidase M16C associated J0B03_00890 PF05193 Peptidase M16 inactive domain J0B03_00895 PF12002 MgsA AAA+ ATPase C terminal J0B03_00895 PF16193 AAA C-terminal domain J0B03_00895 PF05496 Holliday junction DNA helicase RuvB P-loop domain J0B03_00900 PF01212 Beta-eliminating lyase J0B03_00910 PF00464 Serine hydroxymethyltransferase J0B03_00920 PF00899 ThiF family J0B03_00925 PF06574 FAD synthetase J0B03_00925 PF01687 Riboflavin kinase J0B03_00930 PF01509 TruB family pseudouridylate synthase (N terminal domain) J0B03_00930 PF16198 tRNA pseudouridylate synthase B C-terminal domain J0B03_00935 PF01368 DHH family J0B03_00935 PF02272 DHHA1 domain J0B03_00940 PF02033 Ribosome-binding factor A J0B03_00945 PF04760 Translation initiation factor IF-2, N-terminal region J0B03_00945 PF11987 Translation-initiation factor 2 J0B03_00945 PF00009 Elongation factor Tu GTP binding domain J0B03_00945 PF04760 Translation initiation factor IF-2, N-terminal region J0B03_00945 PF11987 Translation-initiation factor 2 J0B03_00945 PF00009 Elongation factor Tu GTP binding domain J0B03_00955 PF04296 Protein of unknown function (DUF448) J0B03_00960 PF00575 S1 RNA binding domain J0B03_00960 PF08529 NusA N-terminal domain J0B03_00960 PF13184 NusA-like KH domain J0B03_00965 PF02576 RimP N-terminal domain J0B03_00965 PF17384 RimP C-terminal SH3 domain J0B03_00970 PF12706 Beta-lactamase superfamily domain J0B03_00975 PF00005 ABC transporter J0B03_00975 PF08402 TOBE domain J0B03_00980 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_00990 PF02308 MgtC family J0B03_00995 PF02811 PHP domain J0B03_01000 PF07733 Bacterial DNA polymerase III alpha NTPase domain J0B03_01000 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J0B03_01000 PF14579 Helix-hairpin-helix motif J0B03_01000 PF02811 PHP domain J0B03_01000 PF11490 DNA polymerase III polC-type N-terminus II J0B03_01000 PF00929 Exonuclease J0B03_01005 PF04551 GcpE protein J0B03_01010 PF17820 PDZ domain J0B03_01010 PF02163 Peptidase family M50 J0B03_01020 PF01255 Putative undecaprenyl diphosphate synthase J0B03_01025 PF01765 Ribosome recycling factor J0B03_01030 PF00696 Amino acid kinase family J0B03_01035 PF00889 Elongation factor TS J0B03_01040 PF00318 Ribosomal protein S2 J0B03_01045 PF08222 CodY helix-turn-helix domain J0B03_01045 PF06018 CodY GAF-like domain J0B03_01050 PF00004 ATPase family associated with various cellular activities (AAA) J0B03_01050 PF07724 AAA domain (Cdc48 subfamily) J0B03_01050 PF10431 C-terminal, D2-small domain, of ClpB protein J0B03_01055 PF00227 Proteasome subunit J0B03_01060 PF01131 DNA topoisomerase J0B03_01060 PF01751 Toprim domain J0B03_01060 PF01396 Topoisomerase DNA binding C4 zinc finger J0B03_01065 PF02481 DNA recombination-mediator protein A J0B03_01065 PF17782 DprA winged helix domain J0B03_01070 PF13335 Magnesium chelatase, subunit ChlI C-terminal J0B03_01070 PF01078 Magnesium chelatase, subunit ChlI J0B03_01075 PF02021 Uncharacterised protein family UPF0102 J0B03_01080 PF01351 Ribonuclease HII J0B03_01085 PF01926 50S ribosome-binding GTPase J0B03_01090 PF10502 Signal peptidase, peptidase S26 J0B03_01095 PF01245 Ribosomal protein L19 J0B03_01100 PF01746 tRNA (Guanine-1)-methyltransferase J0B03_01105 PF01782 RimM N-terminal domain J0B03_01105 PF05239 PRC-barrel domain J0B03_01115 PF00886 Ribosomal protein S16 J0B03_01120 PF02881 SRP54-type protein, helical bundle domain J0B03_01120 PF02978 Signal peptide binding domain J0B03_01120 PF00448 SRP54-type protein, GTPase domain J0B03_01125 PF04297 Putative helix-turn-helix protein, YlxM / p13 like J0B03_01130 PF00448 SRP54-type protein, GTPase domain J0B03_01130 PF02881 SRP54-type protein, helical bundle domain J0B03_01135 PF02463 RecF/RecN/SMC N terminal domain J0B03_01135 PF06470 SMC proteins Flexible Hinge Domain J0B03_01145 PF14622 Ribonuclease-III-like J0B03_01145 PF00035 Double-stranded RNA binding motif J0B03_01150 PF00550 Phosphopantetheine attachment site J0B03_01155 PF02504 Fatty acid synthesis protein J0B03_01160 PF01783 Ribosomal L32p protein family J0B03_01175 PF05636 HIGH Nucleotidyl Transferase J0B03_01185 PF01467 Cytidylyltransferase-like J0B03_01195 PF00271 Helicase conserved C-terminal domain J0B03_01195 PF17191 RecG wedge domain J0B03_01195 PF00270 DEAD/DEAH box helicase J0B03_01205 PF03780 Asp23 family, cell envelope-related function J0B03_01210 PF00830 Ribosomal L28 family J0B03_01220 PF03193 RsgA GTPase J0B03_01220 PF16745 RsgA N-terminal domain J0B03_01225 PF03793 PASTA domain J0B03_01225 PF00069 Protein kinase domain J0B03_01235 PF04055 Radical SAM superfamily J0B03_01240 PF01029 NusB family J0B03_01240 PF01189 16S rRNA methyltransferase RsmB/F J0B03_01245 PF04298 Putative neutral zinc metallopeptidase J0B03_01250 PF02911 Formyl transferase, C-terminal domain J0B03_01250 PF00551 Formyl transferase J0B03_01255 PF01327 Polypeptide deformylase J0B03_01260 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J0B03_01260 PF04851 Type III restriction enzyme, res subunit J0B03_01260 PF18074 Primosomal protein N C-terminal domain J0B03_01260 PF17764 3′ DNA-binding domain (3′BD) J0B03_01260 PF00271 Helicase conserved C-terminal domain J0B03_01265 PF01192 RNA polymerase Rpb6 J0B03_01270 PF00625 Guanylate kinase J0B03_01275 PF03755 YicC-like family, N-terminal region J0B03_01275 PF08340 Domain of unknown function (DUF1732) J0B03_01280 PF01678 Diaminopimelate epimerase J0B03_01285 PF01678 Diaminopimelate epimerase J0B03_01290 PF05670 NFACT protein RNA binding domain J0B03_01305 PF01479 S4 domain J0B03_01305 PF00849 RNA pseudouridylate synthase J0B03_01320 PF04472 Cell division protein SepF J0B03_01325 PF01168 Alanine racemase, N-terminal domain J0B03_01340 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J0B03_01340 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J0B03_01345 PF01926 50S ribosome-binding GTPase J0B03_01345 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J0B03_01355 PF00989 PAS fold J0B03_01355 PF16736 Single Cache-like J0B03_01355 PF00512 His Kinase A (phospho-acceptor) domain J0B03_01355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J0B03_01360 PF00486 Transcriptional regulatory protein, C terminal J0B03_01360 PF00072 Response regulator receiver domain J0B03_01370 PF02583 Metal-sensitive transcriptional repressor J0B03_01375 PF02938 GAD domain J0B03_01375 PF01336 OB-fold nucleic acid binding domain J0B03_01375 PF00152 tRNA synthetases class II (D, K and N) J0B03_01380 PF04055 Radical SAM superfamily J0B03_01385 PF16123 Hydroxyacylglutathione hydrolase C-terminus J0B03_01385 PF00753 Metallo-beta-lactamase superfamily J0B03_01390 PF02580 D-Tyr-tRNA(Tyr) deacylase J0B03_01395 PF02824 TGS domain J0B03_01395 PF13291 ACT domain J0B03_01395 PF04607 Region found in RelA / SpoT proteins J0B03_01400 PF00156 Phosphoribosyl transferase domain J0B03_01405 PF17768 RecJ OB domain J0B03_01405 PF10141 Single-strand DNA-specific exonuclease, C terminal domain J0B03_01405 PF02272 DHHA1 domain J0B03_01405 PF01368 DHH family J0B03_01410 PF06305 Lipopolysaccharide assembly protein A domain J0B03_01415 PF07549 SecD/SecF GG Motif J0B03_01415 PF02355 Protein export membrane protein J0B03_01420 PF02355 Protein export membrane protein J0B03_01420 PF07549 SecD/SecF GG Motif J0B03_01435 PF02699 Preprotein translocase subunit J0B03_01440 PF01702 Queuine tRNA-ribosyltransferase J0B03_01445 PF02547 Queuosine biosynthesis protein J0B03_01450 PF05491 RuvB C-terminal winged helix domain J0B03_01450 PF17864 RuvB AAA lid domain J0B03_01450 PF05496 Holliday junction DNA helicase RuvB P-loop domain J0B03_01455 PF01330 RuvA N terminal domain J0B03_01455 PF07499 RuvA, C-terminal domain J0B03_01460 PF01709 Transcriptional regulator J0B03_01465 PF09186 Domain of unknown function (DUF1949) J0B03_01465 PF01205 Uncharacterized protein family UPF0029 J0B03_01470 PF01926 50S ribosome-binding GTPase J0B03_01470 PF13167 GTP-binding GTPase N-terminal J0B03_01470 PF16360 GTP-binding GTPase Middle Region J0B03_01485 PF01661 Macro domain J0B03_01500 PF00005 ABC transporter J0B03_01505 PF01032 FecCD transport family J0B03_01520 PF01938 TRAM domain J0B03_01520 PF05958 tRNA (Uracil-5-)-methyltransferase J0B03_01530 PF02310 B12 binding domain J0B03_01530 PF02607 B12 binding domain J0B03_01530 PF02965 Vitamin B12 dependent methionine synthase, activation domain J0B03_01530 PF00809 Pterin binding enzyme J0B03_01530 PF02574 Homocysteine S-methyltransferase J0B03_01540 PF00248 Aldo/keto reductase family J0B03_01575 PF00440 Bacterial regulatory proteins, tetR family J0B03_01575 PF17934 Tetracyclin repressor-like, C-terminal domain J0B03_01590 PF01592 NifU-like N terminal domain J0B03_01595 PF00266 Aminotransferase class-V J0B03_01600 PF02082 Transcriptional regulator J0B03_01615 PF04011 LemA family J0B03_01620 PF00293 NUDIX domain J0B03_01630 PF02481 DNA recombination-mediator protein A J0B03_01645 PF00005 ABC transporter J0B03_01650 PF03186 CobD/Cbib protein J0B03_01655 PF00155 Aminotransferase class I and II J0B03_01660 PF07685 CobB/CobQ-like glutamine amidotransferase domain J0B03_01660 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J0B03_01665 PF02571 Precorrin-6x reductase CbiJ/CobK J0B03_01670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J0B03_01675 PF11761 Cobalamin biosynthesis central region J0B03_01675 PF01890 Cobalamin synthesis G C-terminus J0B03_01675 PF11760 Cobalamin synthesis G N-terminal J0B03_01680 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J0B03_01685 PF05175 Methyltransferase small domain J0B03_01690 PF01888 CbiD J0B03_01695 PF02570 Precorrin-8X methylmutase J0B03_01700 PF06180 Cobalt chelatase (CbiK) J0B03_01705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J0B03_01710 PF00202 Aminotransferase class-III J0B03_01715 PF00490 Delta-aminolevulinic acid dehydratase J0B03_01720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J0B03_01720 PF02602 Uroporphyrinogen-III synthase HemD J0B03_01725 PF03900 Porphobilinogen deaminase, C-terminal domain J0B03_01725 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J0B03_01730 PF10414 Sirohaem synthase dimerisation region J0B03_01730 PF14824 Sirohaem biosynthesis protein central J0B03_01730 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J0B03_01735 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J0B03_01735 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J0B03_01735 PF01488 Shikimate / quinate 5-dehydrogenase J0B03_01740 PF00005 ABC transporter J0B03_01750 PF01891 Cobalt uptake substrate-specific transmembrane region J0B03_01755 PF04608 Phosphatidylglycerophosphatase A J0B03_01765 PF00005 ABC transporter J0B03_01770 PF09084 NMT1/THI5 like J0B03_01775 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_01780 PF01910 Thiamine-binding protein J0B03_01790 PF00005 ABC transporter J0B03_01815 PF17810 Arginine decarboxylase helical bundle domain J0B03_01815 PF17944 Arginine decarboxylase C-terminal helical extension J0B03_01815 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J0B03_01820 PF02915 Rubrerythrin J0B03_01825 PF03749 Sugar fermentation stimulation protein RE domain J0B03_01825 PF17746 SfsA N-terminal OB domain J0B03_01835 PF00285 Citrate synthase, C-terminal domain J0B03_01840 PF03435 Saccharopine dehydrogenase NADP binding domain J0B03_01840 PF16653 Saccharopine dehydrogenase C-terminal domain J0B03_01845 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J0B03_01850 PF02390 Putative methyltransferase J0B03_01860 PF13684 Dihydroxyacetone kinase family J0B03_01860 PF02734 DAK2 domain J0B03_01870 PF00793 DAHP synthetase I family J0B03_01885 PF00037 4Fe-4S binding domain J0B03_01885 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J0B03_01885 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J0B03_01905 PF01741 Large-conductance mechanosensitive channel, MscL J0B03_01910 PF00684 DnaJ central domain J0B03_01910 PF01556 DnaJ C terminal domain J0B03_01910 PF00226 DnaJ domain J0B03_01915 PF00012 Hsp70 protein J0B03_01920 PF01025 GrpE J0B03_01925 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding J0B03_01925 PF01628 HrcA protein C terminal domain J0B03_01930 PF04055 Radical SAM superfamily J0B03_01930 PF06969 HemN C-terminal domain J0B03_01935 PF00679 Elongation factor G C-terminus J0B03_01935 PF00009 Elongation factor Tu GTP binding domain J0B03_01935 PF03144 Elongation factor Tu domain 2 J0B03_01935 PF06421 GTP-binding protein LepA C-terminus J0B03_01935 PF14492 Elongation Factor G, domain II J0B03_01940 PF01515 Phosphate acetyl/butaryl transferase J0B03_01945 PF00679 Elongation factor G C-terminus J0B03_01945 PF00009 Elongation factor Tu GTP binding domain J0B03_01945 PF03144 Elongation factor Tu domain 2 J0B03_01960 PF00334 Nucleoside diphosphate kinase J0B03_01965 PF07085 DRTGG domain J0B03_01965 PF02833 DHHA2 domain J0B03_01965 PF01368 DHH family J0B03_01965 PF00571 CBS domain J0B03_01980 PF00293 NUDIX domain J0B03_01990 PF01784 NIF3 (NGG1p interacting factor 3) J0B03_01995 PF04816 tRNA (adenine(22)-N(1))-methyltransferase J0B03_02005 PF04542 Sigma-70 region 2 J0B03_02005 PF03979 Sigma-70 factor, region 1.1 J0B03_02005 PF00140 Sigma-70 factor, region 1.2 J0B03_02005 PF04539 Sigma-70 region 3 J0B03_02005 PF04545 Sigma-70, region 4 J0B03_02010 PF01807 CHC2 zinc finger J0B03_02010 PF10410 DnaB-helicase binding domain of primase J0B03_02010 PF08275 DNA primase catalytic core, N-terminal domain J0B03_02015 PF13286 Phosphohydrolase-associated domain J0B03_02015 PF01966 HD domain J0B03_02025 PF03949 Malic enzyme, NAD binding domain J0B03_02025 PF00390 Malic enzyme, N-terminal domain J0B03_02035 PF01551 Peptidase family M23 J0B03_02045 PF01134 Glucose inhibited division protein A J0B03_02060 PF01022 Bacterial regulatory protein, arsR family J0B03_02070 PF00581 Rhodanese-like domain J0B03_02085 PF00717 Peptidase S24-like J0B03_02085 PF01726 LexA DNA binding domain J0B03_02090 PF06838 Methionine gamma-lyase J0B03_02100 PF01119 DNA mismatch repair protein, C-terminal domain J0B03_02100 PF08676 MutL C terminal dimerisation domain J0B03_02105 PF05188 MutS domain II J0B03_02105 PF05192 MutS domain III J0B03_02105 PF00488 MutS domain V J0B03_02105 PF05190 MutS family domain IV J0B03_02105 PF01624 MutS domain I J0B03_02110 PF00919 Uncharacterized protein family UPF0004 J0B03_02110 PF04055 Radical SAM superfamily J0B03_02110 PF01938 TRAM domain J0B03_02115 PF00753 Metallo-beta-lactamase superfamily J0B03_02115 PF10996 Beta-Casp domain J0B03_02115 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J0B03_02135 PF02401 LytB protein J0B03_02135 PF00575 S1 RNA binding domain J0B03_02145 PF02224 Cytidylate kinase J0B03_02155 PF01380 SIS domain J0B03_02155 PF01418 Helix-turn-helix domain, rpiR family J0B03_02160 PF06962 Putative rRNA methylase J0B03_02170 PF01479 S4 domain J0B03_02170 PF00849 RNA pseudouridylate synthase J0B03_02175 PF04079 Segregation and condensation complex subunit ScpB J0B03_02180 PF02616 Segregation and condensation protein ScpA J0B03_02185 PF02163 Peptidase family M50 J0B03_02190 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J0B03_02190 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J0B03_02195 PF01676 Metalloenzyme superfamily J0B03_02200 PF00293 NUDIX domain J0B03_02205 PF03477 ATP cone domain J0B03_02210 PF00091 Tubulin/FtsZ family, GTPase domain J0B03_02210 PF12327 FtsZ family, C-terminal domain J0B03_02215 PF06947 Protein of unknown function (DUF1290) J0B03_02220 PF05949 Bacterial protein of unknown function (DUF881) J0B03_02225 PF05949 Bacterial protein of unknown function (DUF881) J0B03_02235 PF04101 Glycosyltransferase family 28 C-terminal domain J0B03_02235 PF03033 Glycosyltransferase family 28 N-terminal domain J0B03_02240 PF01098 Cell cycle protein J0B03_02245 PF02875 Mur ligase family, glutamate ligase domain J0B03_02245 PF08245 Mur ligase middle domain J0B03_02250 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 J0B03_02250 PF00953 Glycosyl transferase family 4 J0B03_02255 PF08245 Mur ligase middle domain J0B03_02255 PF02875 Mur ligase family, glutamate ligase domain J0B03_02255 PF01225 Mur ligase family, catalytic domain J0B03_02260 PF08245 Mur ligase middle domain J0B03_02260 PF01225 Mur ligase family, catalytic domain J0B03_02260 PF02875 Mur ligase family, glutamate ligase domain J0B03_02265 PF00905 Penicillin binding protein transpeptidase domain J0B03_02265 PF03717 Penicillin-binding Protein dimerisation domain J0B03_02265 PF03793 PASTA domain J0B03_02275 PF01795 MraW methylase family J0B03_02280 PF02381 MraZ protein, putative antitoxin-like J0B03_02285 PF01790 Prolipoprotein diacylglyceryl transferase J0B03_02290 PF06130 Phosphate propanoyltransferase J0B03_02295 PF02463 RecF/RecN/SMC N terminal domain J0B03_02300 PF02863 Arginine repressor, C-terminal domain J0B03_02300 PF01316 Arginine repressor, DNA binding domain J0B03_02305 PF01513 ATP-NAD kinase J0B03_02310 PF01479 S4 domain J0B03_02310 PF01728 FtsJ-like methyltransferase J0B03_02320 PF00348 Polyprenyl synthetase J0B03_02330 PF13742 OB-fold nucleic acid binding domain J0B03_02330 PF02601 Exonuclease VII, large subunit J0B03_02335 PF00814 Glycoprotease family J0B03_02340 PF01029 NusB family J0B03_02350 PF13685 Iron-containing alcohol dehydrogenase J0B03_02355 PF13344 Haloacid dehalogenase-like hydrolase J0B03_02365 PF03829 PTS system glucitol/sorbitol-specific IIA component J0B03_02370 PF03612 Sorbitol phosphotransferase enzyme II N-terminus J0B03_02370 PF07663 Sorbitol phosphotransferase enzyme II C-terminus J0B03_02375 PF03608 PTS system enzyme II sorbitol-specific factor J0B03_02385 PF04198 Putative sugar-binding domain J0B03_02390 PF01869 BadF/BadG/BcrA/BcrD ATPase family J0B03_02395 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J0B03_02395 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J0B03_02405 PF00871 Acetokinase family J0B03_02410 PF03483 B3/4 domain J0B03_02410 PF03147 Ferredoxin-fold anticodon binding domain J0B03_02410 PF01588 Putative tRNA binding domain J0B03_02410 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J0B03_02410 PF03484 tRNA synthetase B5 domain J0B03_02415 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J0B03_02415 PF01409 tRNA synthetases class II core domain (F) J0B03_02420 PF08032 RNA 2'-O ribose methyltransferase substrate binding J0B03_02420 PF00588 SpoU rRNA Methylase family J0B03_02425 PF02080 TrkA-C domain J0B03_02425 PF02254 TrkA-N domain J0B03_02430 PF02386 Cation transport protein J0B03_02445 PF00860 Permease family J0B03_02515 PF00356 Bacterial regulatory proteins, lacI family J0B03_02525 PF14748 Pyrroline-5-carboxylate reductase dimerisation J0B03_02525 PF03807 NADP oxidoreductase coenzyme F420-dependent J0B03_02530 PF02424 ApbE family J0B03_02555 PF00348 Polyprenyl synthetase J0B03_02560 PF02664 S-Ribosylhomocysteinase (LuxS) J0B03_02565 PF13840 ACT domain J0B03_02565 PF00696 Amino acid kinase family J0B03_02565 PF01842 ACT domain J0B03_02570 PF03447 Homoserine dehydrogenase, NAD binding domain J0B03_02570 PF00742 Homoserine dehydrogenase J0B03_02570 PF01842 ACT domain J0B03_02575 PF00291 Pyridoxal-phosphate dependent enzyme J0B03_02575 PF14821 Threonine synthase N terminus J0B03_02580 PF00288 GHMP kinases N terminal domain J0B03_02580 PF08544 GHMP kinases C terminal J0B03_02590 PF00909 Ammonium Transporter Family J0B03_02595 PF00543 Nitrogen regulatory protein P-II J0B03_02615 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_02615 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J0B03_02620 PF01493 GXGXG motif J0B03_02620 PF00310 Glutamine amidotransferases class-II J0B03_02620 PF04898 Glutamate synthase central domain J0B03_02620 PF01645 Conserved region in glutamate synthase J0B03_02625 PF00005 ABC transporter J0B03_02630 PF12399 Branched-chain amino acid ATP-binding cassette transporter J0B03_02630 PF00005 ABC transporter J0B03_02635 PF02653 Branched-chain amino acid transport system / permease component J0B03_02635 PF11862 Domain of unknown function (DUF3382) J0B03_02640 PF02653 Branched-chain amino acid transport system / permease component J0B03_02645 PF13458 Periplasmic binding protein J0B03_02650 PF03060 Nitronate monooxygenase J0B03_02660 PF13419 Haloacid dehalogenase-like hydrolase J0B03_02665 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase J0B03_02665 PF01676 Metalloenzyme superfamily J0B03_02670 PF01541 GIY-YIG catalytic domain J0B03_02680 PF13302 Acetyltransferase (GNAT) domain J0B03_02685 PF12544 Lysine-2,3-aminomutase J0B03_02685 PF04055 Radical SAM superfamily J0B03_02690 PF00361 Proton-conducting membrane transporter J0B03_02695 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J0B03_02700 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J0B03_02715 PF03334 Na+/H+ antiporter subunit J0B03_02720 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J0B03_02730 PF01895 PhoU domain J0B03_02735 PF00005 ABC transporter J0B03_02740 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_02745 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_02750 PF12849 PBP superfamily domain J0B03_02755 PF13520 Amino acid permease J0B03_02780 PF00072 Response regulator receiver domain J0B03_02780 PF00486 Transcriptional regulatory protein, C terminal J0B03_02785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J0B03_02785 PF00512 His Kinase A (phospho-acceptor) domain J0B03_02810 PF02310 B12 binding domain J0B03_02810 PF02607 B12 binding domain J0B03_02810 PF02965 Vitamin B12 dependent methionine synthase, activation domain J0B03_02810 PF00809 Pterin binding enzyme J0B03_02810 PF02574 Homocysteine S-methyltransferase J0B03_02815 PF01208 Uroporphyrinogen decarboxylase (URO-D) J0B03_02820 PF00809 Pterin binding enzyme J0B03_02820 PF02574 Homocysteine S-methyltransferase J0B03_02820 PF02310 B12 binding domain J0B03_02820 PF02607 B12 binding domain J0B03_02820 PF02965 Vitamin B12 dependent methionine synthase, activation domain J0B03_02840 PF03976 Polyphosphate kinase 2 (PPK2) J0B03_02845 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J0B03_02845 PF02142 MGS-like domain J0B03_02845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J0B03_02850 PF00730 HhH-GPD superfamily base excision DNA repair protein J0B03_02850 PF00633 Helix-hairpin-helix motif J0B03_02850 PF14815 NUDIX domain J0B03_02855 PF00056 lactate/malate dehydrogenase, NAD binding domain J0B03_02855 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J0B03_02860 PF09383 NIL domain J0B03_02860 PF00005 ABC transporter J0B03_02865 PF02653 Branched-chain amino acid transport system / permease component J0B03_02875 PF00135 Carboxylesterase family J0B03_02895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J0B03_02900 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_02905 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_02905 PF12911 N-terminal TM domain of oligopeptide transport permease C J0B03_02910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J0B03_02910 PF00005 ABC transporter J0B03_02915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J0B03_02915 PF00005 ABC transporter J0B03_02920 PF00005 ABC transporter J0B03_02925 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_02930 PF00497 Bacterial extracellular solute-binding proteins, family 3 J0B03_02940 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_02945 PF00005 ABC transporter J0B03_02955 PF01040 UbiA prenyltransferase family J0B03_02965 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J0B03_02965 PF00037 4Fe-4S binding domain J0B03_02965 PF02256 Iron hydrogenase small subunit J0B03_02965 PF02906 Iron only hydrogenase large subunit, C-terminal domain J0B03_02970 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J0B03_02970 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J0B03_02970 PF00037 4Fe-4S binding domain J0B03_02980 PF00999 Sodium/hydrogen exchanger family J0B03_02995 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J0B03_02995 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_03000 PF13476 AAA domain J0B03_03005 PF12320 Type 5 capsule protein repressor C-terminal domain J0B03_03005 PF00149 Calcineurin-like phosphoesterase J0B03_03010 PF02906 Iron only hydrogenase large subunit, C-terminal domain J0B03_03010 PF02256 Iron hydrogenase small subunit J0B03_03010 PF00037 4Fe-4S binding domain J0B03_03010 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J0B03_03015 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J0B03_03015 PF00037 4Fe-4S binding domain J0B03_03015 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J0B03_03045 PF02310 B12 binding domain J0B03_03045 PF02607 B12 binding domain J0B03_03045 PF02965 Vitamin B12 dependent methionine synthase, activation domain J0B03_03045 PF00809 Pterin binding enzyme J0B03_03045 PF02574 Homocysteine S-methyltransferase J0B03_03060 PF07690 Major Facilitator Superfamily J0B03_03070 PF02421 Ferrous iron transport protein B J0B03_03070 PF07664 Ferrous iron transport protein B C terminus J0B03_03070 PF07670 Nucleoside recognition J0B03_03070 PF17910 FeoB cytosolic helical domain J0B03_03075 PF04023 FeoA domain J0B03_03080 PF00005 ABC transporter J0B03_03080 PF12848 ABC transporter J0B03_03085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J0B03_03090 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg J0B03_03090 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II J0B03_03090 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase J0B03_03095 PF13193 AMP-binding enzyme C-terminal domain J0B03_03095 PF00501 AMP-binding enzyme J0B03_03100 PF00583 Acetyltransferase (GNAT) family J0B03_03105 PF00571 CBS domain J0B03_03110 PF00850 Histone deacetylase domain J0B03_03130 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J0B03_03130 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_03135 PF01228 Glycine radical J0B03_03135 PF02901 Pyruvate formate lyase-like J0B03_03140 PF04055 Radical SAM superfamily J0B03_03160 PF14535 AMP-binding enzyme C-terminal domain J0B03_03160 PF00501 AMP-binding enzyme J0B03_03175 PF00501 AMP-binding enzyme J0B03_03175 PF14535 AMP-binding enzyme C-terminal domain J0B03_03190 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_03195 PF00497 Bacterial extracellular solute-binding proteins, family 3 J0B03_03200 PF00291 Pyridoxal-phosphate dependent enzyme J0B03_03205 PF00155 Aminotransferase class I and II J0B03_03210 PF13380 CoA binding domain J0B03_03210 PF00583 Acetyltransferase (GNAT) family J0B03_03210 PF13607 Succinyl-CoA ligase like flavodoxin domain J0B03_03220 PF00266 Aminotransferase class-V J0B03_03230 PF00586 AIR synthase related protein, N-terminal domain J0B03_03230 PF02769 AIR synthase related protein, C-terminal domain J0B03_03235 PF00175 Oxidoreductase NAD-binding domain J0B03_03235 PF00042 Globin J0B03_03235 PF00970 Oxidoreductase FAD-binding domain J0B03_03245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J0B03_03245 PF00005 ABC transporter J0B03_03250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J0B03_03250 PF00005 ABC transporter J0B03_03255 PF12911 N-terminal TM domain of oligopeptide transport permease C J0B03_03255 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_03260 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_03265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J0B03_03270 PF05698 Bacterial trigger factor protein (TF) C-terminus J0B03_03270 PF05697 Bacterial trigger factor protein (TF) J0B03_03270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J0B03_03275 PF04143 Sulphur transport J0B03_03280 PF00924 Mechanosensitive ion channel J0B03_03285 PF14760 Rnk N-terminus J0B03_03285 PF01272 Transcription elongation factor, GreA/GreB, C-term J0B03_03315 PF02901 Pyruvate formate lyase-like J0B03_03315 PF01228 Glycine radical J0B03_03350 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain J0B03_03350 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 J0B03_03355 PF00731 AIR carboxylase J0B03_03360 PF02540 NAD synthase J0B03_03365 PF01969 Protein of unknown function DUF111 J0B03_03370 PF17941 Polyphosphate kinase C-terminal domain 1 J0B03_03370 PF13090 Polyphosphate kinase C-terminal domain 2 J0B03_03370 PF02503 Polyphosphate kinase middle domain J0B03_03370 PF13089 Polyphosphate kinase N-terminal domain J0B03_03375 PF02541 Ppx/GppA phosphatase family J0B03_03385 PF00990 Diguanylate cyclase, GGDEF domain J0B03_03385 PF08448 PAS fold J0B03_03395 PF13673 Acetyltransferase (GNAT) domain J0B03_03400 PF00902 Sec-independent protein translocase protein (TatC) J0B03_03405 PF02416 mttA/Hcf106 family J0B03_03410 PF02634 FdhD/NarQ family J0B03_03420 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 J0B03_03420 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain J0B03_03430 PF00270 DEAD/DEAH box helicase J0B03_03430 PF00271 Helicase conserved C-terminal domain J0B03_03430 PF03880 DbpA RNA binding domain J0B03_03435 PF00107 Zinc-binding dehydrogenase J0B03_03435 PF08240 Alcohol dehydrogenase GroES-like domain J0B03_03440 PF00455 DeoR C terminal sensor domain J0B03_03440 PF08220 DeoR-like helix-turn-helix domain J0B03_03445 PF04226 Transglycosylase associated protein J0B03_03460 PF01966 HD domain J0B03_03460 PF00072 Response regulator receiver domain J0B03_03465 PF00733 Asparagine synthase J0B03_03465 PF13537 Glutamine amidotransferase domain J0B03_03480 PF00933 Glycosyl hydrolase family 3 N terminal domain J0B03_03480 PF14310 Fibronectin type III-like domain J0B03_03480 PF01915 Glycosyl hydrolase family 3 C-terminal domain J0B03_03485 PF02096 60Kd inner membrane protein J0B03_03500 PF00582 Universal stress protein family J0B03_03505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J0B03_03505 PF00384 Molybdopterin oxidoreductase J0B03_03505 PF01568 Molydopterin dinucleotide binding domain J0B03_03520 PF03009 Glycerophosphoryl diester phosphodiesterase family J0B03_03525 PF07739 TipAS antibiotic-recognition domain J0B03_03525 PF13411 MerR HTH family regulatory protein J0B03_03530 PF12791 Anti-sigma factor N-terminus J0B03_03535 PF04542 Sigma-70 region 2 J0B03_03545 PF00565 Staphylococcal nuclease homologue J0B03_03550 PF13556 PucR C-terminal helix-turn-helix domain J0B03_03560 PF01613 Flavin reductase like domain J0B03_03575 PF02965 Vitamin B12 dependent methionine synthase, activation domain J0B03_03575 PF02574 Homocysteine S-methyltransferase J0B03_03575 PF02607 B12 binding domain J0B03_03575 PF02310 B12 binding domain J0B03_03575 PF00809 Pterin binding enzyme J0B03_03585 PF02965 Vitamin B12 dependent methionine synthase, activation domain J0B03_03585 PF00809 Pterin binding enzyme J0B03_03585 PF02574 Homocysteine S-methyltransferase J0B03_03585 PF02607 B12 binding domain J0B03_03585 PF02310 B12 binding domain J0B03_03610 PF01594 AI-2E family transporter J0B03_03620 PF00591 Glycosyl transferase family, a/b domain J0B03_03620 PF02885 Glycosyl transferase family, helical bundle domain J0B03_03625 PF08240 Alcohol dehydrogenase GroES-like domain J0B03_03625 PF00107 Zinc-binding dehydrogenase J0B03_03645 PF13545 Crp-like helix-turn-helix domain J0B03_03645 PF00027 Cyclic nucleotide-binding domain J0B03_03660 PF00890 FAD binding domain J0B03_03660 PF04205 FMN-binding domain J0B03_03665 PF00890 FAD binding domain J0B03_03665 PF04205 FMN-binding domain J0B03_03670 PF00440 Bacterial regulatory proteins, tetR family J0B03_03670 PF08361 MAATS-type transcriptional repressor, C-terminal region J0B03_03675 PF00916 Sulfate permease family J0B03_03675 PF01740 STAS domain J0B03_03700 PF07690 Major Facilitator Superfamily J0B03_03705 PF00582 Universal stress protein family J0B03_03730 PF13732 Domain of unknown function (DUF4162) J0B03_03730 PF00005 ABC transporter J0B03_03735 PF16363 GDP-mannose 4,6 dehydratase J0B03_03745 PF02615 Malate/L-lactate dehydrogenase J0B03_03750 PF09339 IclR helix-turn-helix domain J0B03_03750 PF01614 Bacterial transcriptional regulator J0B03_03755 PF00294 pfkB family carbohydrate kinase J0B03_03760 PF01081 KDPG and KHG aldolase J0B03_03770 PF03786 D-mannonate dehydratase (UxuA) J0B03_03775 PF08240 Alcohol dehydrogenase GroES-like domain J0B03_03775 PF00107 Zinc-binding dehydrogenase J0B03_03790 PF03480 Bacterial extracellular solute-binding protein, family 7 J0B03_03795 PF07729 FCD domain J0B03_03795 PF00392 Bacterial regulatory proteins, gntR family J0B03_03805 PF04324 BFD-like [2Fe-2S] binding domain J0B03_03805 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_03810 PF01266 FAD dependent oxidoreductase J0B03_03815 PF00392 Bacterial regulatory proteins, gntR family J0B03_03815 PF07702 UTRA domain J0B03_03820 PF00990 Diguanylate cyclase, GGDEF domain J0B03_03840 PF00356 Bacterial regulatory proteins, lacI family J0B03_03845 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J0B03_03860 PF02615 Malate/L-lactate dehydrogenase J0B03_03865 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J0B03_03865 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J0B03_03870 PF04074 YhcH/YjgK/YiaL J0B03_03875 PF00072 Response regulator receiver domain J0B03_03875 PF01966 HD domain J0B03_03880 PF08818 Domain of unknown function (DU1801) J0B03_03890 PF02910 Fumarate reductase flavoprotein C-term J0B03_03890 PF00890 FAD binding domain J0B03_03900 PF00005 ABC transporter J0B03_03905 PF12399 Branched-chain amino acid ATP-binding cassette transporter J0B03_03905 PF00005 ABC transporter J0B03_03910 PF02653 Branched-chain amino acid transport system / permease component J0B03_03910 PF11862 Domain of unknown function (DUF3382) J0B03_03915 PF02653 Branched-chain amino acid transport system / permease component J0B03_03925 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_03925 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J0B03_03945 PF03611 PTS system sugar-specific permease component J0B03_03950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J0B03_03960 PF02492 CobW/HypB/UreG, nucleotide-binding domain J0B03_03960 PF07683 Cobalamin synthesis protein cobW C-terminal domain J0B03_03970 PF02607 B12 binding domain J0B03_03970 PF02310 B12 binding domain J0B03_03980 PF00107 Zinc-binding dehydrogenase J0B03_03980 PF08240 Alcohol dehydrogenase GroES-like domain J0B03_03985 PF01791 DeoC/LacD family aldolase J0B03_03990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J0B03_03990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J0B03_04000 PF07702 UTRA domain J0B03_04000 PF00392 Bacterial regulatory proteins, gntR family J0B03_04010 PF00890 FAD binding domain J0B03_04010 PF14537 Cytochrome c3 J0B03_04035 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J0B03_04035 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J0B03_04045 PF03480 Bacterial extracellular solute-binding protein, family 7 J0B03_04050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J0B03_04050 PF03466 LysR substrate binding domain J0B03_04060 PF00596 Class II Aldolase and Adducin N-terminal domain J0B03_04070 PF03611 PTS system sugar-specific permease component J0B03_04085 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J0B03_04090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J0B03_04095 PF00892 EamA-like transporter family J0B03_04110 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) J0B03_04110 PF07581 The GLUG motif J0B03_04115 PF07581 The GLUG motif J0B03_04115 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) J0B03_04150 PF00082 Subtilase family J0B03_04165 PF05598 Transposase domain (DUF772) J0B03_04170 PF13333 Integrase core domain J0B03_04170 PF00665 Integrase core domain J0B03_04170 PF13276 HTH-like domain J0B03_04185 PF00872 Transposase, Mutator family J0B03_04190 PF01467 Cytidylyltransferase-like J0B03_04195 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J0B03_04195 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J0B03_04195 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J0B03_04215 PF00132 Bacterial transferase hexapeptide (six repeats) J0B03_04220 PF02350 UDP-N-acetylglucosamine 2-epimerase J0B03_04225 PF01370 NAD dependent epimerase/dehydratase family J0B03_04230 PF02719 Polysaccharide biosynthesis protein J0B03_04230 PF08485 Polysaccharide biosynthesis protein C-terminal J0B03_04240 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase J0B03_04250 PF13276 HTH-like domain J0B03_04250 PF13333 Integrase core domain J0B03_04250 PF00665 Integrase core domain J0B03_04265 PF02397 Bacterial sugar transferase J0B03_04275 PF16363 GDP-mannose 4,6 dehydratase J0B03_04280 PF00483 Nucleotidyl transferase J0B03_04285 PF02706 Chain length determinant protein J0B03_04285 PF13807 G-rich domain on putative tyrosine kinase J0B03_04285 PF13614 AAA domain J0B03_04290 PF02706 Chain length determinant protein J0B03_04295 PF03816 Cell envelope-related transcriptional attenuator domain J0B03_04315 PF00953 Glycosyl transferase family 4 J0B03_04320 PF00483 Nucleotidyl transferase J0B03_04325 PF08240 Alcohol dehydrogenase GroES-like domain J0B03_04325 PF00107 Zinc-binding dehydrogenase J0B03_04330 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J0B03_04335 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase J0B03_04340 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase J0B03_04345 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase J0B03_04350 PF00005 ABC transporter J0B03_04350 PF08239 Bacterial SH3 domain J0B03_04355 PF01061 ABC-2 type transporter J0B03_04370 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J0B03_04370 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J0B03_04375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J0B03_04375 PF02874 ATP synthase alpha/beta family, beta-barrel domain J0B03_04380 PF00231 ATP synthase J0B03_04385 PF02874 ATP synthase alpha/beta family, beta-barrel domain J0B03_04385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J0B03_04385 PF00306 ATP synthase alpha/beta chain, C terminal domain J0B03_04390 PF00213 ATP synthase delta (OSCP) subunit J0B03_04395 PF00430 ATP synthase B/B' CF(0) J0B03_04400 PF00137 ATP synthase subunit C J0B03_04405 PF00137 ATP synthase subunit C J0B03_04410 PF00137 ATP synthase subunit C J0B03_04415 PF00119 ATP synthase A chain J0B03_04440 PF02502 Ribose/Galactose Isomerase J0B03_04445 PF01451 Low molecular weight phosphotyrosine protein phosphatase J0B03_04450 PF01300 Telomere recombination J0B03_04450 PF03481 Putative GTP-binding controlling metal-binding J0B03_04455 PF00472 RF-1 domain J0B03_04455 PF03462 PCRF domain J0B03_04470 PF00571 CBS domain J0B03_04470 PF01380 SIS domain J0B03_04475 PF02073 Thermophilic metalloprotease (M29) J0B03_04485 PF00005 ABC transporter J0B03_04525 PF01814 Hemerythrin HHE cation binding domain J0B03_04525 PF04405 Domain of Unknown function (DUF542) J0B03_04530 PF00027 Cyclic nucleotide-binding domain J0B03_04530 PF13545 Crp-like helix-turn-helix domain J0B03_04540 PF17783 CvfB-like winged helix domain J0B03_04540 PF13509 S1 domain J0B03_04545 PF00497 Bacterial extracellular solute-binding proteins, family 3 J0B03_04550 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_04555 PF00005 ABC transporter J0B03_04570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J0B03_04570 PF02378 Phosphotransferase system, EIIC J0B03_04575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J0B03_04575 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J0B03_04580 PF00294 pfkB family carbohydrate kinase J0B03_04585 PF00455 DeoR C terminal sensor domain J0B03_04585 PF08220 DeoR-like helix-turn-helix domain J0B03_04595 PF01066 CDP-alcohol phosphatidyltransferase J0B03_04600 PF08497 Radical SAM N-terminal J0B03_04600 PF04055 Radical SAM superfamily J0B03_04600 PF11842 Domain of unknown function (DUF3362) J0B03_04605 PF01416 tRNA pseudouridine synthase J0B03_04610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J0B03_04620 PF01171 PP-loop family J0B03_04625 PF00011 Hsp20/alpha crystallin family J0B03_04645 PF10609 NUBPL iron-transfer P-loop NTPase J0B03_04655 PF10609 NUBPL iron-transfer P-loop NTPase J0B03_04665 PF02001 Protein of unknown function DUF134 J0B03_04670 PF00005 ABC transporter J0B03_04675 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_04680 PF00497 Bacterial extracellular solute-binding proteins, family 3 J0B03_04705 PF01594 AI-2E family transporter J0B03_04710 PF00924 Mechanosensitive ion channel J0B03_04710 PF05552 Conserved TM helix J0B03_04720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J0B03_04720 PF03466 LysR substrate binding domain J0B03_04725 PF02607 B12 binding domain J0B03_04725 PF02310 B12 binding domain J0B03_04735 PF00795 Carbon-nitrogen hydrolase J0B03_04740 PF04371 Porphyromonas-type peptidyl-arginine deiminase J0B03_04755 PF00440 Bacterial regulatory proteins, tetR family J0B03_04755 PF17922 Tetracyclin repressor-like, C-terminal domain J0B03_04765 PF00005 ABC transporter J0B03_04770 PF00120 Glutamine synthetase, catalytic domain J0B03_04770 PF18318 Glutamine synthetase C-terminal domain J0B03_04770 PF12437 Glutamine synthetase type III N terminal J0B03_04775 PF07690 Major Facilitator Superfamily J0B03_04780 PF00005 ABC transporter J0B03_04790 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_04795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J0B03_04795 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_04810 PF00005 ABC transporter J0B03_04815 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_04830 PF00535 Glycosyl transferase family 2 J0B03_04835 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J0B03_04845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J0B03_04845 PF03466 LysR substrate binding domain J0B03_04850 PF04143 Sulphur transport J0B03_04855 PF04143 Sulphur transport J0B03_04860 PF01235 Sodium:alanine symporter family J0B03_04875 PF01758 Sodium Bile acid symporter family J0B03_04880 PF01022 Bacterial regulatory protein, arsR family J0B03_04885 PF00474 Sodium:solute symporter family J0B03_04895 PF00797 N-acetyltransferase J0B03_04900 PF00664 ABC transporter transmembrane region J0B03_04900 PF00005 ABC transporter J0B03_04905 PF00005 ABC transporter J0B03_04905 PF00664 ABC transporter transmembrane region J0B03_04950 PF02901 Pyruvate formate lyase-like J0B03_04950 PF01228 Glycine radical J0B03_04965 PF00465 Iron-containing alcohol dehydrogenase J0B03_04975 PF02653 Branched-chain amino acid transport system / permease component J0B03_04980 PF00005 ABC transporter J0B03_04995 PF00365 Phosphofructokinase J0B03_05000 PF00365 Phosphofructokinase J0B03_05005 PF07694 5TMR of 5TMR-LYT J0B03_05005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J0B03_05005 PF06580 Histidine kinase J0B03_05010 PF04397 LytTr DNA-binding domain J0B03_05010 PF00072 Response regulator receiver domain J0B03_05020 PF00474 Sodium:solute symporter family J0B03_05030 PF14579 Helix-hairpin-helix motif J0B03_05030 PF00929 Exonuclease J0B03_05030 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J0B03_05030 PF01336 OB-fold nucleic acid binding domain J0B03_05030 PF02811 PHP domain J0B03_05030 PF07733 Bacterial DNA polymerase III alpha NTPase domain J0B03_05030 PF11490 DNA polymerase III polC-type N-terminus II J0B03_05035 PF16177 Acetyl-coenzyme A synthetase N-terminus J0B03_05035 PF00501 AMP-binding enzyme J0B03_05035 PF13193 AMP-binding enzyme C-terminal domain J0B03_05040 PF00890 FAD binding domain J0B03_05040 PF14537 Cytochrome c3 J0B03_05065 PF01588 Putative tRNA binding domain J0B03_05075 PF07731 Multicopper oxidase J0B03_05075 PF07732 Multicopper oxidase J0B03_05090 PF03412 Peptidase C39 family J0B03_05090 PF00005 ABC transporter J0B03_05090 PF00664 ABC transporter transmembrane region J0B03_05095 PF03649 Uncharacterised protein family (UPF0014) J0B03_05100 PF04069 Substrate binding domain of ABC-type glycine betaine transport system J0B03_05105 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_05110 PF00571 CBS domain J0B03_05110 PF00005 ABC transporter J0B03_05115 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_05130 PF01569 PAP2 superfamily J0B03_05135 PF13302 Acetyltransferase (GNAT) domain J0B03_05140 PF00248 Aldo/keto reductase family J0B03_05170 PF01134 Glucose inhibited division protein A J0B03_05170 PF13932 GidA associated domain J0B03_05185 PF00440 Bacterial regulatory proteins, tetR family J0B03_05185 PF08361 MAATS-type transcriptional repressor, C-terminal region J0B03_05200 PF12697 Alpha/beta hydrolase family J0B03_05225 PF01699 Sodium/calcium exchanger protein J0B03_05235 PF13276 HTH-like domain J0B03_05235 PF00665 Integrase core domain J0B03_05235 PF13333 Integrase core domain J0B03_05250 PF00005 ABC transporter J0B03_05250 PF12848 ABC transporter J0B03_05255 PF00005 ABC transporter J0B03_05260 PF01061 ABC-2 type transporter J0B03_05280 PF06445 GyrI-like small molecule binding domain J0B03_05280 PF12833 Helix-turn-helix domain J0B03_05285 PF00271 Helicase conserved C-terminal domain J0B03_05285 PF00270 DEAD/DEAH box helicase J0B03_05290 PF17755 UvrA DNA-binding domain J0B03_05290 PF00005 ABC transporter J0B03_05290 PF17760 UvrA interaction domain J0B03_05300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J0B03_05300 PF03466 LysR substrate binding domain J0B03_05305 PF18089 DAPG hydrolase PhiG domain J0B03_05315 PF00890 FAD binding domain J0B03_05315 PF02910 Fumarate reductase flavoprotein C-term J0B03_05335 PF00175 Oxidoreductase NAD-binding domain J0B03_05335 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B J0B03_05340 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J0B03_05340 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_05340 PF13247 4Fe-4S dicluster domain J0B03_05350 PF01381 Helix-turn-helix J0B03_05375 PF00665 Integrase core domain J0B03_05375 PF13276 HTH-like domain J0B03_05375 PF13333 Integrase core domain J0B03_05385 PF00144 Beta-lactamase J0B03_05400 PF01593 Flavin containing amine oxidoreductase J0B03_05425 PF02661 Fic/DOC family J0B03_05425 PF12728 Helix-turn-helix domain J0B03_05440 PF13610 DDE domain J0B03_05445 PF00872 Transposase, Mutator family J0B03_05465 PF02607 B12 binding domain J0B03_05465 PF02310 B12 binding domain J0B03_05485 PF02548 Ketopantoate hydroxymethyltransferase J0B03_05505 PF13610 DDE domain J0B03_05515 PF13361 UvrD-like helicase C-terminal domain J0B03_05515 PF00580 UvrD/REP helicase N-terminal domain J0B03_05540 PF02796 Helix-turn-helix domain of resolvase J0B03_05540 PF00239 Resolvase, N terminal domain J0B03_05555 PF05105 Bacteriophage holin family J0B03_05590 PF05973 Phage derived protein Gp49-like (DUF891) J0B03_05635 PF00574 Clp protease J0B03_05640 PF04860 Phage portal protein J0B03_05675 PF01555 DNA methylase J0B03_05730 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J0B03_05730 PF01367 5'-3' exonuclease, C-terminal SAM fold J0B03_05730 PF01612 3'-5' exonuclease J0B03_05730 PF00476 DNA polymerase family A J0B03_05785 PF13276 HTH-like domain J0B03_05785 PF00665 Integrase core domain J0B03_05785 PF13333 Integrase core domain J0B03_05800 PF01695 IstB-like ATP binding protein J0B03_05830 PF02086 D12 class N6 adenine-specific DNA methyltransferase J0B03_05835 PF01555 DNA methylase J0B03_05845 PF05958 tRNA (Uracil-5-)-methyltransferase J0B03_05845 PF01938 TRAM domain J0B03_05855 PF02632 BioY family J0B03_05865 PF02386 Cation transport protein J0B03_05870 PF02254 TrkA-N domain J0B03_05870 PF02080 TrkA-C domain J0B03_05875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J0B03_05875 PF02702 Osmosensitive K+ channel His kinase sensor domain J0B03_05875 PF00512 His Kinase A (phospho-acceptor) domain J0B03_05875 PF13493 Domain of unknown function (DUF4118) J0B03_05880 PF00072 Response regulator receiver domain J0B03_05880 PF00486 Transcriptional regulatory protein, C terminal J0B03_05885 PF03816 Cell envelope-related transcriptional attenuator domain J0B03_05905 PF04991 LicD family J0B03_05910 PF00294 pfkB family carbohydrate kinase J0B03_05910 PF01467 Cytidylyltransferase-like J0B03_05945 PF00534 Glycosyl transferases group 1 J0B03_05945 PF13439 Glycosyltransferase Family 4 J0B03_05955 PF00535 Glycosyl transferase family 2 J0B03_05960 PF02397 Bacterial sugar transferase J0B03_05965 PF01467 Cytidylyltransferase-like J0B03_05970 PF04794 YdjC-like protein J0B03_05975 PF04991 LicD family J0B03_05995 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J0B03_05995 PF02403 Seryl-tRNA synthetase N-terminal domain J0B03_06000 PF03699 Uncharacterised protein family (UPF0182) J0B03_06005 PF08279 HTH domain J0B03_06005 PF02829 3H domain J0B03_06055 PF01336 OB-fold nucleic acid binding domain J0B03_06055 PF00152 tRNA synthetases class II (D, K and N) J0B03_06060 PF01272 Transcription elongation factor, GreA/GreB, C-term J0B03_06060 PF03449 Transcription elongation factor, N-terminal J0B03_06065 PF01207 Dihydrouridine synthase (Dus) J0B03_06070 PF03309 Type III pantothenate kinase J0B03_06085 PF01434 Peptidase family M41 J0B03_06085 PF06480 FtsH Extracellular J0B03_06085 PF17862 AAA+ lid domain J0B03_06085 PF00004 ATPase family associated with various cellular activities (AAA) J0B03_06090 PF00156 Phosphoribosyl transferase domain J0B03_06095 PF11734 TilS substrate C-terminal domain J0B03_06095 PF01171 PP-loop family J0B03_06125 PF02541 Ppx/GppA phosphatase family J0B03_06125 PF01761 3-dehydroquinate synthase J0B03_06130 PF00575 S1 RNA binding domain J0B03_06140 PF02843 Phosphoribosylglycinamide synthetase, C domain J0B03_06140 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J0B03_06140 PF02844 Phosphoribosylglycinamide synthetase, N domain J0B03_06145 PF02142 MGS-like domain J0B03_06145 PF01808 AICARFT/IMPCHase bienzyme J0B03_06150 PF00551 Formyl transferase J0B03_06155 PF02769 AIR synthase related protein, C-terminal domain J0B03_06155 PF00586 AIR synthase related protein, N-terminal domain J0B03_06160 PF00156 Phosphoribosyl transferase domain J0B03_06165 PF01259 SAICAR synthetase J0B03_06180 PF01479 S4 domain J0B03_06185 PF00216 Bacterial DNA-binding protein J0B03_06190 PF03819 MazG nucleotide pyrophosphohydrolase domain J0B03_06190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J0B03_06195 PF01943 Polysaccharide biosynthesis protein J0B03_06195 PF14667 Polysaccharide biosynthesis C-terminal domain J0B03_06205 PF00639 PPIC-type PPIASE domain J0B03_06210 PF17757 UvrB interaction domain J0B03_06210 PF00270 DEAD/DEAH box helicase J0B03_06210 PF02559 CarD-like/TRCF domain J0B03_06210 PF03461 TRCF domain J0B03_06210 PF00271 Helicase conserved C-terminal domain J0B03_06215 PF02559 CarD-like/TRCF domain J0B03_06215 PF17757 UvrB interaction domain J0B03_06215 PF03461 TRCF domain J0B03_06215 PF00271 Helicase conserved C-terminal domain J0B03_06215 PF00270 DEAD/DEAH box helicase J0B03_06220 PF01195 Peptidyl-tRNA hydrolase J0B03_06225 PF14572 Phosphoribosyl synthetase-associated domain J0B03_06225 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J0B03_06230 PF00132 Bacterial transferase hexapeptide (six repeats) J0B03_06230 PF12804 MobA-like NTP transferase domain J0B03_06235 PF04026 SpoVG J0B03_06240 PF09182 Bacterial purine repressor, N-terminal J0B03_06240 PF00156 Phosphoribosyl transferase domain J0B03_06245 PF02875 Mur ligase family, glutamate ligase domain J0B03_06245 PF08245 Mur ligase middle domain J0B03_06245 PF01225 Mur ligase family, catalytic domain J0B03_06260 PF01043 SecA preprotein cross-linking domain J0B03_06260 PF02810 SEC-C motif J0B03_06260 PF07516 SecA Wing and Scaffold domain J0B03_06260 PF07517 SecA DEAD-like domain J0B03_06265 PF00708 Acylphosphatase J0B03_06270 PF01880 Desulfoferrodoxin J0B03_06275 PF11700 Vacuole effluxer Atg22 like J0B03_06285 PF00330 Aconitase family (aconitate hydratase) J0B03_06290 PF00682 HMGL-like J0B03_06295 PF00579 tRNA synthetases class I (W and Y) J0B03_06300 PF01177 Asp/Glu/Hydantoin racemase J0B03_06305 PF00380 Ribosomal protein S9/S16 J0B03_06310 PF00572 Ribosomal protein L13 J0B03_06315 PF01416 tRNA pseudouridine synthase J0B03_06320 PF02361 Cobalt transport protein J0B03_06325 PF00005 ABC transporter J0B03_06330 PF00005 ABC transporter J0B03_06335 PF01196 Ribosomal protein L17 J0B03_06340 PF01000 RNA polymerase Rpb3/RpoA insert domain J0B03_06340 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J0B03_06340 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J0B03_06345 PF00163 Ribosomal protein S4/S9 N-terminal domain J0B03_06345 PF01479 S4 domain J0B03_06350 PF00411 Ribosomal protein S11 J0B03_06355 PF00416 Ribosomal protein S13/S18 J0B03_06360 PF00444 Ribosomal protein L36 J0B03_06365 PF01176 Translation initiation factor 1A / IF-1 J0B03_06375 PF00557 Metallopeptidase family M24 J0B03_06380 PF05191 Adenylate kinase, active site lid J0B03_06385 PF00344 SecY translocase J0B03_06390 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J0B03_06395 PF00327 Ribosomal protein L30p/L7e J0B03_06400 PF03719 Ribosomal protein S5, C-terminal domain J0B03_06400 PF00333 Ribosomal protein S5, N-terminal domain J0B03_06405 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J0B03_06410 PF00347 Ribosomal protein L6 J0B03_06415 PF00410 Ribosomal protein S8 J0B03_06420 PF00253 Ribosomal protein S14p/S29e J0B03_06425 PF00281 Ribosomal protein L5 J0B03_06425 PF00673 ribosomal L5P family C-terminus J0B03_06430 PF00467 KOW motif J0B03_06430 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J0B03_06435 PF00238 Ribosomal protein L14p/L23e J0B03_06440 PF00366 Ribosomal protein S17 J0B03_06445 PF00831 Ribosomal L29 protein J0B03_06450 PF00252 Ribosomal protein L16p/L10e J0B03_06455 PF07650 KH domain J0B03_06455 PF00189 Ribosomal protein S3, C-terminal domain J0B03_06460 PF00237 Ribosomal protein L22p/L17e J0B03_06465 PF00203 Ribosomal protein S19 J0B03_06470 PF03947 Ribosomal Proteins L2, C-terminal domain J0B03_06470 PF00181 Ribosomal Proteins L2, RNA binding domain J0B03_06475 PF00276 Ribosomal protein L23 J0B03_06480 PF00573 Ribosomal protein L4/L1 family J0B03_06485 PF00297 Ribosomal protein L3 J0B03_06490 PF00338 Ribosomal protein S10p/S20e J0B03_06495 PF00009 Elongation factor Tu GTP binding domain J0B03_06495 PF03144 Elongation factor Tu domain 2 J0B03_06495 PF03143 Elongation factor Tu C-terminal domain J0B03_06505 PF00177 Ribosomal protein S7p/S5e J0B03_06510 PF00164 Ribosomal protein S12/S23 J0B03_06515 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family J0B03_06520 PF04998 RNA polymerase Rpb1, domain 5 J0B03_06520 PF05000 RNA polymerase Rpb1, domain 4 J0B03_06520 PF04983 RNA polymerase Rpb1, domain 3 J0B03_06520 PF04997 RNA polymerase Rpb1, domain 1 J0B03_06520 PF00623 RNA polymerase Rpb1, domain 2 J0B03_06525 PF04563 RNA polymerase beta subunit J0B03_06525 PF10385 RNA polymerase beta subunit external 1 domain J0B03_06525 PF04561 RNA polymerase Rpb2, domain 2 J0B03_06525 PF00562 RNA polymerase Rpb2, domain 6 J0B03_06525 PF04565 RNA polymerase Rpb2, domain 3 J0B03_06525 PF04560 RNA polymerase Rpb2, domain 7 J0B03_06530 PF00542 Ribosomal protein L7/L12 C-terminal domain J0B03_06530 PF16320 Ribosomal protein L7/L12 dimerisation domain J0B03_06535 PF00466 Ribosomal protein L10 J0B03_06540 PF00687 Ribosomal protein L1p/L10e family J0B03_06545 PF00298 Ribosomal protein L11, RNA binding domain J0B03_06545 PF03946 Ribosomal protein L11, N-terminal domain J0B03_06550 PF02357 Transcription termination factor nusG J0B03_06550 PF00467 KOW motif J0B03_06555 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J0B03_06560 PF00471 Ribosomal protein L33 J0B03_06565 PF03143 Elongation factor Tu C-terminal domain J0B03_06565 PF00009 Elongation factor Tu GTP binding domain J0B03_06565 PF03144 Elongation factor Tu domain 2 J0B03_06580 PF08281 Sigma-70, region 4 J0B03_06580 PF04542 Sigma-70 region 2 J0B03_06590 PF00588 SpoU rRNA Methylase family J0B03_06590 PF08032 RNA 2'-O ribose methyltransferase substrate binding J0B03_06595 PF02511 Thymidylate synthase complementing protein J0B03_06600 PF02926 THUMP domain J0B03_06600 PF01170 Putative RNA methylase family UPF0020 J0B03_06605 PF13393 Histidyl-tRNA synthetase J0B03_06610 PF00579 tRNA synthetases class I (W and Y) J0B03_06610 PF01479 S4 domain J0B03_06615 PF01252 Signal peptidase (SPase) II J0B03_06620 PF00392 Bacterial regulatory proteins, gntR family J0B03_06620 PF07729 FCD domain J0B03_06625 PF08544 GHMP kinases C terminal J0B03_06625 PF00288 GHMP kinases N terminal domain J0B03_06630 PF08544 GHMP kinases C terminal J0B03_06630 PF00288 GHMP kinases N terminal domain J0B03_06635 PF13361 UvrD-like helicase C-terminal domain J0B03_06635 PF00580 UvrD/REP helicase N-terminal domain J0B03_06635 PF12705 PD-(D/E)XK nuclease superfamily J0B03_06640 PF12705 PD-(D/E)XK nuclease superfamily J0B03_06645 PF04015 Domain of unknown function (DUF362) J0B03_06650 PF01261 Xylose isomerase-like TIM barrel J0B03_06670 PF03180 NLPA lipoprotein J0B03_06675 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_06680 PF09383 NIL domain J0B03_06680 PF00005 ABC transporter J0B03_06685 PF02082 Transcriptional regulator J0B03_06690 PF02082 Transcriptional regulator J0B03_06710 PF00403 Heavy-metal-associated domain J0B03_06715 PF01022 Bacterial regulatory protein, arsR family J0B03_06720 PF03167 Uracil DNA glycosylase superfamily J0B03_06725 PF06874 Firmicute fructose-1,6-bisphosphatase J0B03_06740 PF18419 ATP-grasp-like domain J0B03_06740 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J0B03_06740 PF04262 Glutamate-cysteine ligase J0B03_06745 PF00271 Helicase conserved C-terminal domain J0B03_06745 PF00270 DEAD/DEAH box helicase J0B03_06750 PF13419 Haloacid dehalogenase-like hydrolase J0B03_06755 PF00582 Universal stress protein family J0B03_06760 PF01232 Mannitol dehydrogenase Rossmann domain J0B03_06760 PF08125 Mannitol dehydrogenase C-terminal domain J0B03_06765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J0B03_06770 PF05043 Mga helix-turn-helix domain J0B03_06770 PF08279 HTH domain J0B03_06770 PF00874 PRD domain J0B03_06770 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J0B03_06775 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J0B03_06775 PF02378 Phosphotransferase system, EIIC J0B03_06785 PF04002 RadC-like JAB domain J0B03_06790 PF03631 Virulence factor BrkB J0B03_06805 PF00571 CBS domain J0B03_06805 PF02163 Peptidase family M50 J0B03_06815 PF01625 Peptide methionine sulfoxide reductase J0B03_06815 PF01641 SelR domain J0B03_06830 PF12146 Serine aminopeptidase, S33 J0B03_06835 PF08331 Domain of unknown function (DUF1730) J0B03_06855 PF17827 PrmC N-terminal domain J0B03_06855 PF05175 Methyltransferase small domain J0B03_06860 PF01197 Ribosomal protein L31 J0B03_06865 PF08264 Anticodon-binding domain of tRNA J0B03_06865 PF09334 tRNA synthetases class I (M) J0B03_06865 PF01588 Putative tRNA binding domain J0B03_06870 PF18277 AbrB C-terminal domain J0B03_06870 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J0B03_06875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J0B03_06880 PF00709 Adenylosuccinate synthetase J0B03_06890 PF00772 DnaB-like helicase N terminal domain J0B03_06890 PF03796 DnaB-like helicase C terminal domain J0B03_06895 PF03948 Ribosomal protein L9, C-terminal domain J0B03_06895 PF01281 Ribosomal protein L9, N-terminal domain J0B03_06900 PF01368 DHH family J0B03_06900 PF02272 DHHA1 domain J0B03_06905 PF01084 Ribosomal protein S18 J0B03_06910 PF00436 Single-strand binding protein family J0B03_06915 PF01250 Ribosomal protein S6 J0B03_06920 PF06107 Bacterial protein of unknown function (DUF951) J0B03_06935 PF17762 HTH domain found in ParB protein J0B03_06935 PF02195 ParB-like nuclease domain J0B03_06940 PF13614 AAA domain J0B03_06945 PF17762 HTH domain found in ParB protein J0B03_06945 PF02195 ParB-like nuclease domain J0B03_06950 PF02527 rRNA small subunit methyltransferase G J0B03_06955 PF01134 Glucose inhibited division protein A J0B03_06955 PF13932 GidA associated domain J0B03_06960 PF01926 50S ribosome-binding GTPase J0B03_06960 PF12631 MnmE helical domain J0B03_06960 PF10396 GTP-binding protein TrmE N-terminus J0B03_06965 PF14804 Jag N-terminus J0B03_06965 PF01424 R3H domain J0B03_06970 PF02096 60Kd inner membrane protein J0B03_06975 PF01809 Putative membrane protein insertion efficiency factor J0B03_06980 PF00825 Ribonuclease P J0B03_06985 PF00468 Ribosomal protein L34 J0B03_06990 PF11638 DnaA N-terminal domain J0B03_06990 PF00308 Bacterial dnaA protein J0B03_06990 PF08299 Bacterial dnaA protein helix-turn-helix J0B03_06995 PF00712 DNA polymerase III beta subunit, N-terminal domain J0B03_06995 PF02767 DNA polymerase III beta subunit, central domain J0B03_06995 PF02768 DNA polymerase III beta subunit, C-terminal domain J0B03_07005 PF02463 RecF/RecN/SMC N terminal domain J0B03_07010 PF01751 Toprim domain J0B03_07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J0B03_07010 PF00986 DNA gyrase B subunit, carboxyl terminus J0B03_07010 PF00204 DNA gyrase B J0B03_07015 PF00521 DNA gyrase/topoisomerase IV, subunit A J0B03_07015 PF03989 DNA gyrase C-terminal domain, beta-propeller J0B03_07025 PF00834 Ribulose-phosphate 3 epimerase family J0B03_07030 PF00497 Bacterial extracellular solute-binding proteins, family 3 J0B03_07035 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_07040 PF00005 ABC transporter J0B03_07045 PF00301 Rubredoxin J0B03_07065 PF00085 Thioredoxin J0B03_07070 PF01276 Orn/Lys/Arg decarboxylase, major domain J0B03_07070 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain J0B03_07075 PF02223 Thymidylate kinase J0B03_07080 PF09115 DNA polymerase III, delta subunit, C terminal J0B03_07085 PF04468 PSP1 C-terminal conserved region J0B03_07090 PF12838 4Fe-4S dicluster domain J0B03_07095 PF05175 Methyltransferase small domain J0B03_07100 PF01502 Phosphoribosyl-AMP cyclohydrolase J0B03_07100 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J0B03_07105 PF00977 Histidine biosynthesis protein J0B03_07110 PF00977 Histidine biosynthesis protein J0B03_07115 PF00117 Glutamine amidotransferase class-I J0B03_07120 PF00475 Imidazoleglycerol-phosphate dehydratase J0B03_07125 PF00815 Histidinol dehydrogenase J0B03_07130 PF01634 ATP phosphoribosyltransferase J0B03_07135 PF13393 Histidyl-tRNA synthetase J0B03_07140 PF13419 Haloacid dehalogenase-like hydrolase J0B03_07145 PF01743 Poly A polymerase head domain J0B03_07145 PF12627 Probable RNA and SrmB- binding site of polymerase A J0B03_07145 PF13735 tRNA nucleotidyltransferase domain 2 putative J0B03_07150 PF02659 Putative manganese efflux pump J0B03_07155 PF13331 Domain of unknown function (DUF4093) J0B03_07155 PF01751 Toprim domain J0B03_07160 PF00398 Ribosomal RNA adenine dimethylase J0B03_07165 PF01557 Fumarylacetoacetate (FAA) hydrolase family J0B03_07175 PF03707 Bacterial signalling protein N terminal repeat J0B03_07175 PF00563 EAL domain J0B03_07175 PF00990 Diguanylate cyclase, GGDEF domain J0B03_07195 PF00005 ABC transporter J0B03_07200 PF07730 Histidine kinase J0B03_07200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J0B03_07205 PF00196 Bacterial regulatory proteins, luxR family J0B03_07205 PF00072 Response regulator receiver domain J0B03_07225 PF00155 Aminotransferase class I and II J0B03_07230 PF01894 Uncharacterised protein family UPF0047 J0B03_07240 PF01554 MatE J0B03_07245 PF01047 MarR family J0B03_07250 PF00005 ABC transporter J0B03_07250 PF00664 ABC transporter transmembrane region J0B03_07255 PF00664 ABC transporter transmembrane region J0B03_07255 PF00005 ABC transporter J0B03_07260 PF00689 Cation transporting ATPase, C-terminus J0B03_07260 PF00690 Cation transporter/ATPase, N-terminus J0B03_07290 PF00583 Acetyltransferase (GNAT) family J0B03_07295 PF01043 SecA preprotein cross-linking domain J0B03_07295 PF07516 SecA Wing and Scaffold domain J0B03_07295 PF07517 SecA DEAD-like domain J0B03_07295 PF02810 SEC-C motif J0B03_07315 PF03116 NQR2, RnfD, RnfE family J0B03_07320 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) J0B03_07320 PF07581 The GLUG motif J0B03_07330 PF12127 SigmaW regulon antibacterial J0B03_07335 PF01957 NfeD-like C-terminal, partner-binding J0B03_07335 PF01972 Serine dehydrogenase proteinase J0B03_07340 PF00005 ABC transporter J0B03_07345 PF02687 FtsX-like permease family J0B03_07345 PF12704 MacB-like periplasmic core domain J0B03_07355 PF05105 Bacteriophage holin family J0B03_07400 PF18665 Tetracyclin repressor-like, C-terminal domain J0B03_07400 PF00440 Bacterial regulatory proteins, tetR family J0B03_07405 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J0B03_07460 PF01571 Aminomethyltransferase folate-binding domain J0B03_07460 PF08669 Glycine cleavage T-protein C-terminal barrel domain J0B03_07475 PF02548 Ketopantoate hydroxymethyltransferase J0B03_07505 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_07505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J0B03_07535 PF02028 BCCT, betaine/carnitine/choline family transporter J0B03_07570 PF00392 Bacterial regulatory proteins, gntR family J0B03_07570 PF00155 Aminotransferase class I and II J0B03_07580 PF00133 tRNA synthetases class I (I, L, M and V) J0B03_07580 PF08264 Anticodon-binding domain of tRNA J0B03_07585 PF00356 Bacterial regulatory proteins, lacI family J0B03_07590 PF02615 Malate/L-lactate dehydrogenase J0B03_07620 PF01116 Fructose-bisphosphate aldolase class-II J0B03_07630 PF03328 HpcH/HpaI aldolase/citrate lyase family J0B03_07635 PF03480 Bacterial extracellular solute-binding protein, family 7 J0B03_07645 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J0B03_07645 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J0B03_07650 PF08264 Anticodon-binding domain of tRNA J0B03_07650 PF00133 tRNA synthetases class I (I, L, M and V) J0B03_07715 PF00072 Response regulator receiver domain J0B03_07745 PF00885 6,7-dimethyl-8-ribityllumazine synthase J0B03_07750 PF00925 GTP cyclohydrolase II J0B03_07750 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J0B03_07755 PF00677 Lumazine binding domain J0B03_07760 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J0B03_07760 PF01872 RibD C-terminal domain J0B03_07770 PF04024 PspC domain J0B03_07785 PF00005 ABC transporter J0B03_07790 PF01048 Phosphorylase superfamily J0B03_07805 PF01168 Alanine racemase, N-terminal domain J0B03_07805 PF00842 Alanine racemase, C-terminal domain J0B03_07810 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) J0B03_07810 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 J0B03_07815 PF06418 CTP synthase N-terminus J0B03_07815 PF00117 Glutamine amidotransferase class-I J0B03_07820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J0B03_07820 PF07497 Rho termination factor, RNA-binding domain J0B03_07820 PF07498 Rho termination factor, N-terminal domain J0B03_07825 PF18152 DAHP synthase ferredoxin-like domain J0B03_07825 PF00793 DAHP synthetase I family J0B03_07830 PF02153 Prephenate dehydrogenase J0B03_07835 PF01026 TatD related DNase J0B03_07840 PF06725 3D domain J0B03_07845 PF05496 Holliday junction DNA helicase RuvB P-loop domain J0B03_07845 PF05491 RuvB C-terminal winged helix domain J0B03_07845 PF17864 RuvB AAA lid domain J0B03_07855 PF08525 Opacity-associated protein A N-terminal motif J0B03_07855 PF01476 LysM domain J0B03_07855 PF01551 Peptidase family M23 J0B03_07860 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J0B03_07865 PF00753 Metallo-beta-lactamase superfamily J0B03_07870 PF13180 PDZ domain J0B03_07880 PF01966 HD domain J0B03_07880 PF01336 OB-fold nucleic acid binding domain J0B03_07890 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J0B03_07890 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J0B03_07900 PF00205 Thiamine pyrophosphate enzyme, central domain J0B03_07900 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J0B03_07900 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J0B03_07910 PF08502 LeuA allosteric (dimerisation) domain J0B03_07910 PF00682 HMGL-like J0B03_07915 PF00180 Isocitrate/isopropylmalate dehydrogenase J0B03_07930 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J0B03_07930 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J0B03_07940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J0B03_07940 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_07950 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J0B03_07950 PF01871 AMMECR1 J0B03_07965 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain J0B03_07965 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain J0B03_07975 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J0B03_07980 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B J0B03_07990 PF00156 Phosphoribosyl transferase domain J0B03_07995 PF00117 Glutamine amidotransferase class-I J0B03_07995 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J0B03_08000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J0B03_08000 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J0B03_08000 PF02142 MGS-like domain J0B03_08005 PF02082 Transcriptional regulator J0B03_08010 PF00291 Pyridoxal-phosphate dependent enzyme J0B03_08015 PF00583 Acetyltransferase (GNAT) family J0B03_08020 PF12838 4Fe-4S dicluster domain J0B03_08020 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J0B03_08020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J0B03_08020 PF01568 Molydopterin dinucleotide binding domain J0B03_08020 PF00384 Molybdopterin oxidoreductase J0B03_08025 PF12804 MobA-like NTP transferase domain J0B03_08030 PF02634 FdhD/NarQ family J0B03_08045 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 J0B03_08045 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain J0B03_08060 PF02590 Predicted SPOUT methyltransferase J0B03_08070 PF02146 Sir2 family J0B03_08085 PF00994 Probable molybdopterin binding domain J0B03_08095 PF00994 Probable molybdopterin binding domain J0B03_08095 PF03454 MoeA C-terminal region (domain IV) J0B03_08095 PF03453 MoeA N-terminal region (domain I and II) J0B03_08100 PF12727 PBP superfamily domain J0B03_08100 PF12728 Helix-turn-helix domain J0B03_08105 PF04055 Radical SAM superfamily J0B03_08105 PF06463 Molybdenum Cofactor Synthesis C J0B03_08110 PF01967 MoaC family J0B03_08120 PF02954 Bacterial regulatory protein, Fis family J0B03_08120 PF13426 PAS domain J0B03_08120 PF00158 Sigma-54 interaction domain J0B03_08125 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain J0B03_08125 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 J0B03_08135 PF00899 ThiF family J0B03_08135 PF00581 Rhodanese-like domain J0B03_08155 PF11258 Protein of unknown function (DUF3048) N-terminal domain J0B03_08155 PF17479 Protein of unknown function (DUF3048) C-terminal domain J0B03_08160 PF05195 Aminopeptidase P, N-terminal domain J0B03_08160 PF00557 Metallopeptidase family M24 J0B03_08170 PF11799 impB/mucB/samB family C-terminal domain J0B03_08170 PF00817 impB/mucB/samB family J0B03_08180 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain J0B03_08180 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family J0B03_08180 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain J0B03_08190 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J0B03_08190 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J0B03_08190 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J0B03_08190 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J0B03_08195 PF02073 Thermophilic metalloprotease (M29) J0B03_08205 PF00171 Aldehyde dehydrogenase family J0B03_08210 PF00438 S-adenosylmethionine synthetase, N-terminal domain J0B03_08210 PF02773 S-adenosylmethionine synthetase, C-terminal domain J0B03_08210 PF02772 S-adenosylmethionine synthetase, central domain J0B03_08220 PF00186 Dihydrofolate reductase J0B03_08225 PF07977 FabA-like domain J0B03_08230 PF00109 Beta-ketoacyl synthase, N-terminal domain J0B03_08230 PF02801 Beta-ketoacyl synthase, C-terminal domain J0B03_08240 PF00698 Acyl transferase domain J0B03_08245 PF00550 Phosphopantetheine attachment site J0B03_08250 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J0B03_08250 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J0B03_08255 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J0B03_08260 PF17848 Acetyl-coA carboxylase zinc finger domain J0B03_08260 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J0B03_08265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J0B03_08265 PF02785 Biotin carboxylase C-terminal domain J0B03_08265 PF00289 Biotin carboxylase, N-terminal domain J0B03_08270 PF00364 Biotin-requiring enzyme J0B03_08275 PF00364 Biotin-requiring enzyme J0B03_08280 PF07055 Enoyl reductase FAD binding domain J0B03_08280 PF12241 Trans-2-enoyl-CoA reductase catalytic region J0B03_08280 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J0B03_08290 PF00156 Phosphoribosyl transferase domain J0B03_08295 PF01565 FAD binding domain J0B03_08295 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J0B03_08300 PF02811 PHP domain J0B03_08305 PF03668 P-loop ATPase protein family J0B03_08310 PF01933 Uncharacterised protein family UPF0052 J0B03_08315 PF02650 WhiA C-terminal HTH domain J0B03_08315 PF14527 WhiA LAGLIDADG-like domain J0B03_08315 PF10298 WhiA N-terminal LAGLIDADG-like domain J0B03_08320 PF07733 Bacterial DNA polymerase III alpha NTPase domain J0B03_08320 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J0B03_08320 PF14579 Helix-hairpin-helix motif J0B03_08320 PF02811 PHP domain J0B03_08320 PF01336 OB-fold nucleic acid binding domain J0B03_08325 PF00365 Phosphofructokinase J0B03_08330 PF00391 PEP-utilising enzyme, mobile domain J0B03_08330 PF00224 Pyruvate kinase, barrel domain J0B03_08330 PF02887 Pyruvate kinase, alpha/beta domain J0B03_08340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J0B03_08340 PF00672 HAMP domain J0B03_08340 PF00512 His Kinase A (phospho-acceptor) domain J0B03_08340 PF13426 PAS domain J0B03_08345 PF00486 Transcriptional regulatory protein, C terminal J0B03_08345 PF00072 Response regulator receiver domain J0B03_08355 PF00156 Phosphoribosyl transferase domain J0B03_08370 PF01915 Glycosyl hydrolase family 3 C-terminal domain J0B03_08370 PF00933 Glycosyl hydrolase family 3 N terminal domain J0B03_08370 PF14310 Fibronectin type III-like domain J0B03_08385 PF01032 FecCD transport family J0B03_08390 PF00005 ABC transporter J0B03_08425 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase J0B03_08430 PF01522 Polysaccharide deacetylase J0B03_08435 PF16123 Hydroxyacylglutathione hydrolase C-terminus J0B03_08435 PF00753 Metallo-beta-lactamase superfamily J0B03_08440 PF00990 Diguanylate cyclase, GGDEF domain J0B03_08440 PF05231 MASE1 J0B03_08440 PF00563 EAL domain J0B03_08440 PF13426 PAS domain J0B03_08440 PF08448 PAS fold J0B03_08440 PF08447 PAS fold J0B03_08470 PF13186 Iron-sulfur cluster-binding domain J0B03_08470 PF04055 Radical SAM superfamily J0B03_08480 PF02545 Maf-like protein J0B03_08505 PF02492 CobW/HypB/UreG, nucleotide-binding domain J0B03_08505 PF07683 Cobalamin synthesis protein cobW C-terminal domain J0B03_08515 PF17152 Periplasmic sensor domain J0B03_08515 PF00990 Diguanylate cyclase, GGDEF domain J0B03_08520 PF04073 Aminoacyl-tRNA editing domain J0B03_08525 PF00293 NUDIX domain J0B03_08540 PF03060 Nitronate monooxygenase J0B03_08545 PF01228 Glycine radical J0B03_08545 PF02901 Pyruvate formate lyase-like J0B03_08550 PF02901 Pyruvate formate lyase-like J0B03_08550 PF01228 Glycine radical J0B03_08555 PF03466 LysR substrate binding domain J0B03_08555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J0B03_08560 PF04055 Radical SAM superfamily J0B03_08565 PF08903 Domain of unknown function (DUF1846) J0B03_08570 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 J0B03_08575 PF00484 Carbonic anhydrase J0B03_08580 PF00155 Aminotransferase class I and II J0B03_08585 PF03109 ABC1 family J0B03_08595 PF00990 Diguanylate cyclase, GGDEF domain J0B03_08595 PF00072 Response regulator receiver domain J0B03_08600 PF07690 Major Facilitator Superfamily J0B03_08615 PF12833 Helix-turn-helix domain J0B03_08615 PF02311 AraC-like ligand binding domain J0B03_08620 PF00107 Zinc-binding dehydrogenase J0B03_08620 PF08240 Alcohol dehydrogenase GroES-like domain J0B03_08625 PF00456 Transketolase, thiamine diphosphate binding domain J0B03_08630 PF02780 Transketolase, C-terminal domain J0B03_08630 PF02779 Transketolase, pyrimidine binding domain J0B03_08670 PF00817 impB/mucB/samB family J0B03_08670 PF11799 impB/mucB/samB family C-terminal domain J0B03_08675 PF07859 alpha/beta hydrolase fold J0B03_08700 PF00753 Metallo-beta-lactamase superfamily J0B03_08700 PF00581 Rhodanese-like domain J0B03_08710 PF03600 Citrate transporter J0B03_08710 PF02080 TrkA-C domain J0B03_08725 PF00171 Aldehyde dehydrogenase family J0B03_08730 PF00209 Sodium:neurotransmitter symporter family J0B03_08735 PF13426 PAS domain J0B03_08735 PF08448 PAS fold J0B03_08735 PF05231 MASE1 J0B03_08735 PF00563 EAL domain J0B03_08735 PF08447 PAS fold J0B03_08735 PF00990 Diguanylate cyclase, GGDEF domain J0B03_08740 PF07690 Major Facilitator Superfamily J0B03_08745 PF05378 Hydantoinase/oxoprolinase N-terminal region J0B03_08745 PF01968 Hydantoinase/oxoprolinase J0B03_08755 PF02608 ABC transporter substrate-binding protein PnrA-like J0B03_08760 PF00005 ABC transporter J0B03_08770 PF02653 Branched-chain amino acid transport system / permease component J0B03_08775 PF01761 3-dehydroquinate synthase J0B03_08785 PF01264 Chorismate synthase J0B03_08790 PF01842 ACT domain J0B03_08790 PF01817 Chorismate mutase type II J0B03_08790 PF00800 Prephenate dehydratase J0B03_08800 PF00289 Biotin carboxylase, N-terminal domain J0B03_08800 PF00682 HMGL-like J0B03_08800 PF02436 Conserved carboxylase domain J0B03_08800 PF02785 Biotin carboxylase C-terminal domain J0B03_08800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J0B03_08800 PF00364 Biotin-requiring enzyme J0B03_08805 PF02457 DisA bacterial checkpoint controller nucleotide-binding J0B03_08820 PF01063 Amino-transferase class IV J0B03_08825 PF05524 PEP-utilising enzyme, N-terminal J0B03_08825 PF00391 PEP-utilising enzyme, mobile domain J0B03_08825 PF02896 PEP-utilising enzyme, TIM barrel domain J0B03_08830 PF00381 PTS HPr component phosphorylation site J0B03_08845 PF01740 STAS domain J0B03_08850 PF13581 Histidine kinase-like ATPase domain J0B03_08855 PF04545 Sigma-70, region 4 J0B03_08855 PF04539 Sigma-70 region 3 J0B03_08855 PF04542 Sigma-70 region 2 J0B03_08860 PF00679 Elongation factor G C-terminus J0B03_08860 PF03144 Elongation factor Tu domain 2 J0B03_08860 PF00009 Elongation factor Tu GTP binding domain J0B03_08860 PF03764 Elongation factor G, domain IV J0B03_08860 PF14492 Elongation Factor G, domain II J0B03_08870 PF02151 UvrB/uvrC motif J0B03_08875 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain J0B03_08880 PF00004 ATPase family associated with various cellular activities (AAA) J0B03_08880 PF10431 C-terminal, D2-small domain, of ClpB protein J0B03_08880 PF17871 AAA lid domain J0B03_08880 PF07724 AAA domain (Cdc48 subfamily) J0B03_08880 PF02861 Clp amino terminal domain, pathogenicity island component J0B03_08885 PF02237 Biotin protein ligase C terminal domain J0B03_08885 PF08279 HTH domain J0B03_08885 PF03099 Biotin/lipoate A/B protein ligase family J0B03_08900 PF02678 Pirin J0B03_08900 PF05726 Pirin C-terminal cupin domain J0B03_08915 PF01297 Zinc-uptake complex component A periplasmic J0B03_08920 PF00005 ABC transporter J0B03_08925 PF00950 ABC 3 transport family J0B03_08950 PF13649 Methyltransferase domain J0B03_08955 PF02618 YceG-like family J0B03_08960 PF01047 MarR family J0B03_08965 PF02915 Rubrerythrin J0B03_08970 PF00462 Glutaredoxin J0B03_08990 PF04204 Homoserine O-succinyltransferase J0B03_08995 PF01053 Cys/Met metabolism PLP-dependent enzyme J0B03_09005 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J0B03_09005 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J0B03_09010 PF02557 D-alanyl-D-alanine carboxypeptidase J0B03_09025 PF01554 MatE J0B03_09030 PF01699 Sodium/calcium exchanger protein J0B03_09035 PF08486 Stage II sporulation protein J0B03_09055 PF02719 Polysaccharide biosynthesis protein J0B03_09060 PF07581 The GLUG motif J0B03_09060 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) J0B03_09065 PF01554 MatE J0B03_09075 PF00990 Diguanylate cyclase, GGDEF domain J0B03_09075 PF00563 EAL domain J0B03_09075 PF03707 Bacterial signalling protein N terminal repeat J0B03_09080 PF00753 Metallo-beta-lactamase superfamily J0B03_09080 PF00258 Flavodoxin J0B03_09080 PF00301 Rubredoxin J0B03_09090 PF00085 Thioredoxin J0B03_09095 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_09100 PF01556 DnaJ C terminal domain J0B03_09100 PF00226 DnaJ domain J0B03_09105 PF02861 Clp amino terminal domain, pathogenicity island component J0B03_09105 PF00004 ATPase family associated with various cellular activities (AAA) J0B03_09105 PF10431 C-terminal, D2-small domain, of ClpB protein J0B03_09105 PF17871 AAA lid domain J0B03_09105 PF07724 AAA domain (Cdc48 subfamily) J0B03_09110 PF01544 CorA-like Mg2+ transporter protein J0B03_09120 PF01266 FAD dependent oxidoreductase J0B03_09125 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_09125 PF04324 BFD-like [2Fe-2S] binding domain J0B03_09135 PF00156 Phosphoribosyl transferase domain J0B03_09140 PF00860 Permease family J0B03_09155 PF00381 PTS HPr component phosphorylation site J0B03_09160 PF05979 Bacterial protein of unknown function (DUF896) J0B03_09165 PF02127 Aminopeptidase I zinc metalloprotease (M18) J0B03_09170 PF01121 Dephospho-CoA kinase J0B03_09205 PF08676 MutL C terminal dimerisation domain J0B03_09205 PF01119 DNA mismatch repair protein, C-terminal domain J0B03_09210 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J0B03_09210 PF13375 RnfC Barrel sandwich hybrid domain J0B03_09210 PF10531 SLBB domain J0B03_09210 PF13237 4Fe-4S dicluster domain J0B03_09215 PF03116 NQR2, RnfD, RnfE family J0B03_09220 PF04205 FMN-binding domain J0B03_09225 PF02508 Rnf-Nqr subunit, membrane protein J0B03_09230 PF02508 Rnf-Nqr subunit, membrane protein J0B03_09235 PF00037 4Fe-4S binding domain J0B03_09235 PF13187 4Fe-4S dicluster domain J0B03_09235 PF04060 Putative Fe-S cluster J0B03_09245 PF02545 Maf-like protein J0B03_09265 PF00905 Penicillin binding protein transpeptidase domain J0B03_09265 PF03717 Penicillin-binding Protein dimerisation domain J0B03_09265 PF03717 Penicillin-binding Protein dimerisation domain J0B03_09265 PF00905 Penicillin binding protein transpeptidase domain J0B03_09270 PF01545 Cation efflux family J0B03_09270 PF16916 Dimerisation domain of Zinc Transporter J0B03_09280 PF00873 AcrB/AcrD/AcrF family J0B03_09290 PF00881 Nitroreductase family J0B03_09300 PF07228 Stage II sporulation protein E (SpoIIE) J0B03_09300 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain J0B03_09305 PF16199 Radical_SAM C-terminal domain J0B03_09305 PF04055 Radical SAM superfamily J0B03_09310 PF00300 Histidine phosphatase superfamily (branch 1) J0B03_09315 PF01116 Fructose-bisphosphate aldolase class-II J0B03_09320 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J0B03_09320 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J0B03_09325 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus J0B03_09325 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J0B03_09345 PF07516 SecA Wing and Scaffold domain J0B03_09345 PF02810 SEC-C motif J0B03_09345 PF01043 SecA preprotein cross-linking domain J0B03_09345 PF07517 SecA DEAD-like domain J0B03_09355 PF07722 Peptidase C26 J0B03_09360 PF16921 Tex protein YqgF-like domain J0B03_09360 PF09371 Tex-like protein N-terminal domain J0B03_09360 PF00575 S1 RNA binding domain J0B03_09360 PF17674 HHH domain J0B03_09365 PF12822 ECF transporter, substrate-specific component J0B03_09370 PF00809 Pterin binding enzyme J0B03_09370 PF02310 B12 binding domain J0B03_09370 PF02574 Homocysteine S-methyltransferase J0B03_09370 PF02607 B12 binding domain J0B03_09370 PF02965 Vitamin B12 dependent methionine synthase, activation domain J0B03_09380 PF00814 Glycoprotease family J0B03_09405 PF00486 Transcriptional regulatory protein, C terminal J0B03_09405 PF00072 Response regulator receiver domain J0B03_09410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J0B03_09410 PF00512 His Kinase A (phospho-acceptor) domain J0B03_09410 PF16736 Single Cache-like J0B03_09410 PF00989 PAS fold J0B03_09420 PF00583 Acetyltransferase (GNAT) family J0B03_09430 PF00814 Glycoprotease family J0B03_09435 PF00005 ABC transporter J0B03_09435 PF12848 ABC transporter J0B03_09435 PF16326 ABC transporter C-terminal domain J0B03_09440 PF02629 CoA binding domain J0B03_09440 PF06971 Putative DNA-binding protein N-terminus J0B03_09445 PF00120 Glutamine synthetase, catalytic domain J0B03_09445 PF03951 Glutamine synthetase, beta-Grasp domain J0B03_09470 PF04474 Protein of unknown function (DUF554) J0B03_09475 PF00166 Chaperonin 10 Kd subunit J0B03_09480 PF00118 TCP-1/cpn60 chaperonin family J0B03_09490 PF00478 IMP dehydrogenase / GMP reductase domain J0B03_09490 PF00571 CBS domain J0B03_09495 PF02540 NAD synthase J0B03_09495 PF00958 GMP synthase C terminal domain J0B03_09495 PF00117 Glutamine amidotransferase class-I J0B03_09500 PF00512 His Kinase A (phospho-acceptor) domain J0B03_09500 PF00989 PAS fold J0B03_09500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J0B03_09500 PF16736 Single Cache-like J0B03_09505 PF00072 Response regulator receiver domain J0B03_09505 PF00486 Transcriptional regulatory protein, C terminal J0B03_09510 PF12704 MacB-like periplasmic core domain J0B03_09510 PF02687 FtsX-like permease family J0B03_09510 PF00005 ABC transporter J0B03_09535 PF05853 beta-keto acid cleavage enzyme J0B03_09540 PF00108 Thiolase, N-terminal domain J0B03_09540 PF02803 Thiolase, C-terminal domain J0B03_09545 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J0B03_09545 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J0B03_09560 PF01144 Coenzyme A transferase J0B03_09565 PF01144 Coenzyme A transferase J0B03_09570 PF00158 Sigma-54 interaction domain J0B03_09570 PF00072 Response regulator receiver domain J0B03_09570 PF02954 Bacterial regulatory protein, Fis family J0B03_09575 PF02645 Uncharacterised protein, DegV family COG1307 J0B03_09600 PF03358 NADPH-dependent FMN reductase J0B03_09605 PF00881 Nitroreductase family J0B03_09615 PF02540 NAD synthase J0B03_09615 PF00958 GMP synthase C terminal domain J0B03_09630 PF01252 Signal peptidase (SPase) II J0B03_09635 PF00072 Response regulator receiver domain J0B03_09635 PF00486 Transcriptional regulatory protein, C terminal J0B03_09640 PF00672 HAMP domain J0B03_09640 PF14827 Double sensory domain of two-component sensor kinase J0B03_09640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J0B03_09640 PF00512 His Kinase A (phospho-acceptor) domain J0B03_09640 PF13426 PAS domain J0B03_09645 PF00465 Iron-containing alcohol dehydrogenase J0B03_09650 PF13361 UvrD-like helicase C-terminal domain J0B03_09650 PF00580 UvrD/REP helicase N-terminal domain J0B03_09660 PF02686 Glu-tRNAGln amidotransferase C subunit J0B03_09665 PF01425 Amidase J0B03_09670 PF02637 GatB domain J0B03_09670 PF02934 GatB/GatE catalytic domain J0B03_09675 PF00586 AIR synthase related protein, N-terminal domain J0B03_09675 PF02769 AIR synthase related protein, C-terminal domain J0B03_09680 PF01138 3' exoribonuclease family, domain 1 J0B03_09680 PF03725 3' exoribonuclease family, domain 2 J0B03_09685 PF01725 Ham1 family J0B03_09730 PF12161 HsdM N-terminal domain J0B03_09730 PF02384 N-6 DNA Methylase J0B03_09735 PF01420 Type I restriction modification DNA specificity domain J0B03_09740 PF12008 Type I restriction and modification enzyme - subunit R C terminal J0B03_09740 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) J0B03_09740 PF18766 SWI2/SNF2 ATPase J0B03_09750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J0B03_09750 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_09755 PF01522 Polysaccharide deacetylase J0B03_09765 PF00005 ABC transporter J0B03_09770 PF01458 Uncharacterized protein family (UPF0051) J0B03_09790 PF01226 Formate/nitrite transporter J0B03_09800 PF00403 Heavy-metal-associated domain J0B03_09805 PF00403 Heavy-metal-associated domain J0B03_09810 PF02583 Metal-sensitive transcriptional repressor J0B03_09820 PF00291 Pyridoxal-phosphate dependent enzyme J0B03_09825 PF01546 Peptidase family M20/M25/M40 J0B03_09825 PF07687 Peptidase dimerisation domain J0B03_09830 PF00923 Transaldolase/Fructose-6-phosphate aldolase J0B03_09840 PF06253 Trimethylamine methyltransferase (MTTB) J0B03_09850 PF06253 Trimethylamine methyltransferase (MTTB) J0B03_09855 PF02028 BCCT, betaine/carnitine/choline family transporter J0B03_09865 PF00665 Integrase core domain J0B03_09865 PF13333 Integrase core domain J0B03_09865 PF13276 HTH-like domain J0B03_09870 PF02028 BCCT, betaine/carnitine/choline family transporter J0B03_09880 PF03459 TOBE domain J0B03_09880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J0B03_09890 PF12849 PBP superfamily domain J0B03_09895 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_09900 PF00005 ABC transporter J0B03_09910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J0B03_09910 PF01842 ACT domain J0B03_09910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J0B03_09920 PF00485 Phosphoribulokinase / Uridine kinase family J0B03_09945 PF14693 Ribosomal protein TL5, C-terminal domain J0B03_09945 PF01386 Ribosomal L25p family J0B03_09950 PF07478 D-ala D-ala ligase C-terminus J0B03_09960 PF04198 Putative sugar-binding domain J0B03_09960 PF13936 Helix-turn-helix domain J0B03_09965 PF00676 Dehydrogenase E1 component J0B03_09970 PF02780 Transketolase, C-terminal domain J0B03_09970 PF02779 Transketolase, pyrimidine binding domain J0B03_09975 PF00364 Biotin-requiring enzyme J0B03_09975 PF02817 e3 binding domain J0B03_09975 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J0B03_09980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J0B03_09980 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_10000 PF09190 DALR domain J0B03_10000 PF01406 tRNA synthetases class I (C) catalytic domain J0B03_10005 PF00636 Ribonuclease III domain J0B03_10010 PF01926 50S ribosome-binding GTPase J0B03_10010 PF06071 Protein of unknown function (DUF933) J0B03_10015 PF04309 Glycerol-3-phosphate responsive antiterminator J0B03_10020 PF00456 Transketolase, thiamine diphosphate binding domain J0B03_10020 PF02780 Transketolase, C-terminal domain J0B03_10020 PF02779 Transketolase, pyrimidine binding domain J0B03_10025 PF04055 Radical SAM superfamily J0B03_10035 PF00005 ABC transporter J0B03_10040 PF02687 FtsX-like permease family J0B03_10040 PF18075 FtsX extracellular domain J0B03_10045 PF08525 Opacity-associated protein A N-terminal motif J0B03_10045 PF01551 Peptidase family M23 J0B03_10045 PF01476 LysM domain J0B03_10050 PF01471 Putative peptidoglycan binding domain J0B03_10050 PF03572 Peptidase family S41 J0B03_10050 PF17820 PDZ domain J0B03_10060 PF00255 Glutathione peroxidase J0B03_10065 PF02502 Ribose/Galactose Isomerase J0B03_10080 PF12733 Cadherin-like beta sandwich domain J0B03_10080 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) J0B03_10120 PF07690 Major Facilitator Superfamily J0B03_10130 PF02607 B12 binding domain J0B03_10130 PF02310 B12 binding domain J0B03_10135 PF18267 Rubredoxin NAD+ reductase C-terminal domain J0B03_10135 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_10145 PF13396 Phospholipase_D-nuclease N-terminal J0B03_10145 PF13091 PLD-like domain J0B03_10155 PF01820 D-ala D-ala ligase N-terminus J0B03_10155 PF07478 D-ala D-ala ligase C-terminus J0B03_10165 PF00750 tRNA synthetases class I (R) J0B03_10165 PF03485 Arginyl tRNA synthetase N terminal domain J0B03_10165 PF05746 DALR anticodon binding domain J0B03_10170 PF07687 Peptidase dimerisation domain J0B03_10170 PF01546 Peptidase family M20/M25/M40 J0B03_10180 PF18073 Rubredoxin metal binding domain J0B03_10185 PF02559 CarD-like/TRCF domain J0B03_10195 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J0B03_10200 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J0B03_10200 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J0B03_10200 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J0B03_10200 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J0B03_10205 PF01380 SIS domain J0B03_10215 PF00890 FAD binding domain J0B03_10215 PF04205 FMN-binding domain J0B03_10225 PF05362 Lon protease (S16) C-terminal proteolytic domain J0B03_10225 PF13654 AAA domain J0B03_10230 PF02615 Malate/L-lactate dehydrogenase J0B03_10235 PF00313 'Cold-shock' DNA-binding domain J0B03_10245 PF00465 Iron-containing alcohol dehydrogenase J0B03_10260 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J0B03_10270 PF00183 Hsp90 protein J0B03_10295 PF00180 Isocitrate/isopropylmalate dehydrogenase J0B03_10295 PF18324 Hypothetical protein TT1725 J0B03_10300 PF14437 MafB19-like deaminase J0B03_10310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J0B03_10310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J0B03_10315 PF00266 Aminotransferase class-V J0B03_10325 PF00005 ABC transporter J0B03_10355 PF12169 DNA polymerase III subunits gamma and tau domain III J0B03_10360 PF02575 YbaB/EbfC DNA-binding family J0B03_10365 PF02132 RecR protein J0B03_10365 PF13662 Toprim domain J0B03_10370 PF00271 Helicase conserved C-terminal domain J0B03_10370 PF04851 Type III restriction enzyme, res subunit J0B03_10370 PF02151 UvrB/uvrC motif J0B03_10370 PF12344 Ultra-violet resistance protein B J0B03_10370 PF17757 UvrB interaction domain J0B03_10375 PF17760 UvrA interaction domain J0B03_10375 PF17755 UvrA DNA-binding domain J0B03_10385 PF05698 Bacterial trigger factor protein (TF) C-terminus J0B03_10385 PF05697 Bacterial trigger factor protein (TF) J0B03_10385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J0B03_10390 PF00574 Clp protease J0B03_10395 PF06689 ClpX C4-type zinc finger J0B03_10395 PF07724 AAA domain (Cdc48 subfamily) J0B03_10395 PF10431 C-terminal, D2-small domain, of ClpB protein J0B03_10400 PF00004 ATPase family associated with various cellular activities (AAA) J0B03_10400 PF02190 ATP-dependent protease La (LON) substrate-binding domain J0B03_10400 PF05362 Lon protease (S16) C-terminal proteolytic domain J0B03_10405 PF01926 50S ribosome-binding GTPase J0B03_10410 PF08331 Domain of unknown function (DUF1730) J0B03_10415 PF00575 S1 RNA binding domain J0B03_10415 PF10150 Ribonuclease E/G family J0B03_10420 PF00829 Ribosomal prokaryotic L21 protein J0B03_10430 PF01016 Ribosomal L27 protein J0B03_10435 PF01018 GTP1/OBG J0B03_10435 PF09269 Domain of unknown function (DUF1967) J0B03_10435 PF01926 50S ribosome-binding GTPase J0B03_10445 PF01467 Cytidylyltransferase-like J0B03_10450 PF01966 HD domain J0B03_10465 PF00588 SpoU rRNA Methylase family J0B03_10470 PF02690 Na+/Pi-cotransporter J0B03_10475 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_10480 PF04552 Sigma-54, DNA binding domain J0B03_10480 PF04963 Sigma-54 factor, core binding domain J0B03_10480 PF00309 Sigma-54 factor, Activator interacting domain (AID) J0B03_10485 PF04198 Putative sugar-binding domain J0B03_10490 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J0B03_10490 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J0B03_10495 PF00162 Phosphoglycerate kinase J0B03_10500 PF00121 Triosephosphate isomerase J0B03_10505 PF01676 Metalloenzyme superfamily J0B03_10505 PF06415 BPG-independent PGAM N-terminus (iPGM_N) J0B03_10510 PF03952 Enolase, N-terminal domain J0B03_10510 PF00113 Enolase, C-terminal TIM barrel domain J0B03_10515 PF03840 Preprotein translocase SecG subunit J0B03_10520 PF03030 Inorganic H+ pyrophosphatase J0B03_10530 PF00575 S1 RNA binding domain J0B03_10530 PF00773 RNB domain J0B03_10530 PF08206 Ribonuclease B OB domain J0B03_10530 PF17876 Cold shock domain J0B03_10535 PF01668 SmpB protein J0B03_10575 PF07995 Glucose / Sorbosone dehydrogenase J0B03_10590 PF02645 Uncharacterised protein, DegV family COG1307 J0B03_10600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J0B03_10610 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J0B03_10610 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_10615 PF03883 Peroxide stress protein YaaA J0B03_10620 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J0B03_10660 PF00072 Response regulator receiver domain J0B03_10665 PF00005 ABC transporter J0B03_10665 PF00571 CBS domain J0B03_10670 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_10675 PF04069 Substrate binding domain of ABC-type glycine betaine transport system J0B03_10680 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J0B03_10680 PF00205 Thiamine pyrophosphate enzyme, central domain J0B03_10680 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J0B03_10685 PF00155 Aminotransferase class I and II J0B03_10690 PF00171 Aldehyde dehydrogenase family J0B03_10695 PF07859 alpha/beta hydrolase fold J0B03_10715 PF01325 Iron dependent repressor, N-terminal DNA binding domain J0B03_10715 PF02742 Iron dependent repressor, metal binding and dimerisation domain J0B03_10715 PF18357 Diphteria toxin repressor SH3 domain J0B03_10725 PF02421 Ferrous iron transport protein B J0B03_10725 PF17910 FeoB cytosolic helical domain J0B03_10725 PF07664 Ferrous iron transport protein B C terminus J0B03_10725 PF07670 Nucleoside recognition J0B03_10765 PF10531 SLBB domain J0B03_10765 PF13375 RnfC Barrel sandwich hybrid domain J0B03_10765 PF13237 4Fe-4S dicluster domain J0B03_10765 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J0B03_10770 PF00990 Diguanylate cyclase, GGDEF domain J0B03_10780 PF05437 Branched-chain amino acid transport protein (AzlD) J0B03_10785 PF03591 AzlC protein J0B03_10790 PF09107 Elongation factor SelB, winged helix J0B03_10790 PF09106 Elongation factor SelB, winged helix J0B03_10790 PF03144 Elongation factor Tu domain 2 J0B03_10790 PF00009 Elongation factor Tu GTP binding domain J0B03_10790 PF09105 Elongation factor SelB, winged helix J0B03_10795 PF12390 Selenocysteine synthase N terminal J0B03_10795 PF03841 L-seryl-tRNA selenium transferase J0B03_10815 PF02151 UvrB/uvrC motif J0B03_10815 PF08459 UvrC Helix-hairpin-helix N-terminal J0B03_10815 PF01541 GIY-YIG catalytic domain J0B03_10825 PF02603 HPr Serine kinase N terminus J0B03_10825 PF07475 HPr Serine kinase C-terminal domain J0B03_10830 PF02811 PHP domain J0B03_10835 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J0B03_10840 PF02645 Uncharacterised protein, DegV family COG1307 J0B03_10845 PF02645 Uncharacterised protein, DegV family COG1307 J0B03_10850 PF00342 Phosphoglucose isomerase J0B03_10860 PF00072 Response regulator receiver domain J0B03_10860 PF00486 Transcriptional regulatory protein, C terminal J0B03_10870 PF00512 His Kinase A (phospho-acceptor) domain J0B03_10870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J0B03_10870 PF18719 ArlS sensor domain J0B03_10875 PF00440 Bacterial regulatory proteins, tetR family J0B03_10880 PF01648 4'-phosphopantetheinyl transferase superfamily J0B03_10885 PF01256 Carbohydrate kinase J0B03_10885 PF03853 YjeF-related protein N-terminus J0B03_10890 PF02540 NAD synthase J0B03_10890 PF00795 Carbon-nitrogen hydrolase J0B03_10895 PF01371 Trp repressor protein J0B03_10900 PF08501 Shikimate dehydrogenase substrate binding domain J0B03_10905 PF01098 Cell cycle protein J0B03_10920 PF00749 tRNA synthetases class I (E and Q), catalytic domain J0B03_10930 PF00206 Lyase J0B03_10930 PF14698 Argininosuccinate lyase C-terminal J0B03_10935 PF00764 Arginosuccinate synthase J0B03_10940 PF01118 Semialdehyde dehydrogenase, NAD binding domain J0B03_10940 PF02774 Semialdehyde dehydrogenase, dimerisation domain J0B03_10945 PF01960 ArgJ family J0B03_10950 PF00696 Amino acid kinase family J0B03_10955 PF00202 Aminotransferase class-III J0B03_10960 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J0B03_10960 PF00117 Glutamine amidotransferase class-I J0B03_10965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J0B03_10965 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J0B03_10965 PF02142 MGS-like domain J0B03_10970 PF02660 Glycerol-3-phosphate acyltransferase J0B03_10975 PF08471 Class II vitamin B12-dependent ribonucleotide reductase J0B03_10975 PF02867 Ribonucleotide reductase, barrel domain J0B03_10990 PF01063 Amino-transferase class IV J0B03_11005 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J0B03_11005 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J0B03_11005 PF02824 TGS domain J0B03_11005 PF03129 Anticodon binding domain J0B03_11010 PF05198 Translation initiation factor IF-3, N-terminal domain J0B03_11010 PF00707 Translation initiation factor IF-3, C-terminal domain J0B03_11015 PF01632 Ribosomal protein L35 J0B03_11020 PF00453 Ribosomal protein L20 J0B03_11030 PF04542 Sigma-70 region 2 J0B03_11030 PF08281 Sigma-70, region 4 J0B03_11035 PF13490 Putative zinc-finger J0B03_11040 PF01367 5'-3' exonuclease, C-terminal SAM fold J0B03_11040 PF00476 DNA polymerase family A J0B03_11040 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J0B03_11045 PF00849 RNA pseudouridylate synthase J0B03_11045 PF01479 S4 domain J0B03_11050 PF03838 Recombination protein U J0B03_11055 PF00075 RNase H J0B03_11060 PF01812 5-formyltetrahydrofolate cyclo-ligase family J0B03_11065 PF02310 B12 binding domain J0B03_11065 PF02607 B12 binding domain J0B03_11070 PF00392 Bacterial regulatory proteins, gntR family J0B03_11070 PF07702 UTRA domain J0B03_11080 PF01047 MarR family J0B03_11085 PF02645 Uncharacterised protein, DegV family COG1307 J0B03_11095 PF01513 ATP-NAD kinase J0B03_11115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J0B03_11120 PF00155 Aminotransferase class I and II J0B03_11155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J0B03_11155 PF02874 ATP synthase alpha/beta family, beta-barrel domain J0B03_11155 PF16886 ATPsynthase alpha/beta subunit N-term extension J0B03_11160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J0B03_11160 PF02874 ATP synthase alpha/beta family, beta-barrel domain J0B03_11165 PF01813 ATP synthase subunit D J0B03_11170 PF13302 Acetyltransferase (GNAT) domain J0B03_11180 PF00768 D-alanyl-D-alanine carboxypeptidase J0B03_11190 PF00753 Metallo-beta-lactamase superfamily J0B03_11190 PF03772 Competence protein J0B03_11190 PF13567 Domain of unknown function (DUF4131) J0B03_11200 PF01649 Ribosomal protein S20 J0B03_11205 PF00800 Prephenate dehydratase J0B03_11205 PF01817 Chorismate mutase type II J0B03_11215 PF00849 RNA pseudouridylate synthase J0B03_11220 PF00905 Penicillin binding protein transpeptidase domain J0B03_11220 PF00912 Transglycosylase J0B03_11230 PF03063 Prismane/CO dehydrogenase family J0B03_11235 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J0B03_11240 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain J0B03_11240 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit J0B03_11250 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit J0B03_11255 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit J0B03_11255 PF04060 Putative Fe-S cluster J0B03_11265 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit J0B03_11265 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain J0B03_11270 PF00175 Oxidoreductase NAD-binding domain J0B03_11270 PF00111 2Fe-2S iron-sulfur cluster binding domain J0B03_11270 PF00970 Oxidoreductase FAD-binding domain J0B03_11280 PF02310 B12 binding domain J0B03_11280 PF02607 B12 binding domain J0B03_11290 PF00205 Thiamine pyrophosphate enzyme, central domain J0B03_11290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J0B03_11290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J0B03_11295 PF10369 Small subunit of acetolactate synthase J0B03_11295 PF01842 ACT domain J0B03_11315 PF01268 Formate--tetrahydrofolate ligase J0B03_11320 PF04961 Formiminotransferase-cyclodeaminase J0B03_11325 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J0B03_11325 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J0B03_11345 PF02277 Phosphoribosyltransferase J0B03_11360 PF02875 Mur ligase family, glutamate ligase domain J0B03_11360 PF08245 Mur ligase middle domain J0B03_11370 PF00633 Helix-hairpin-helix motif J0B03_11370 PF10576 Iron-sulfur binding domain of endonuclease III J0B03_11370 PF00730 HhH-GPD superfamily base excision DNA repair protein J0B03_11375 PF01497 Periplasmic binding protein J0B03_11380 PF01032 FecCD transport family J0B03_11385 PF00005 ABC transporter J0B03_11390 PF07685 CobB/CobQ-like glutamine amidotransferase domain J0B03_11395 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J0B03_11400 PF02654 Cobalamin-5-phosphate synthase J0B03_11405 PF00300 Histidine phosphatase superfamily (branch 1) J0B03_11420 PF02885 Glycosyl transferase family, helical bundle domain J0B03_11420 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain J0B03_11420 PF00591 Glycosyl transferase family, a/b domain J0B03_11425 PF02631 RecX family J0B03_11430 PF05167 Uncharacterised ACR (DUF711) J0B03_11450 PF04452 RNA methyltransferase J0B03_11455 PF04055 Radical SAM superfamily J0B03_11455 PF01938 TRAM domain J0B03_11455 PF00919 Uncharacterized protein family UPF0004 J0B03_11460 PF01230 HIT domain J0B03_11465 PF01165 Ribosomal protein S21 J0B03_11470 PF09424 Yqey-like protein J0B03_11475 PF02562 PhoH-like protein J0B03_11480 PF07697 7TM-HD extracellular J0B03_11480 PF01966 HD domain J0B03_11480 PF07698 7TM receptor with intracellular HD hydrolase J0B03_11485 PF02130 Uncharacterized protein family UPF0054 J0B03_11490 PF01219 Prokaryotic diacylglycerol kinase J0B03_11495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J0B03_11500 PF07650 KH domain J0B03_11500 PF01926 50S ribosome-binding GTPase J0B03_11505 PF02565 Recombination protein O C terminal J0B03_11505 PF11967 Recombination protein O N terminal J0B03_11510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J0B03_11510 PF03129 Anticodon binding domain J0B03_11515 PF08279 HTH domain J0B03_11515 PF00571 CBS domain J0B03_11520 PF03618 Kinase/pyrophosphorylase J0B03_11525 PF02896 PEP-utilising enzyme, TIM barrel domain J0B03_11525 PF00391 PEP-utilising enzyme, mobile domain J0B03_11525 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J0B03_11540 PF00664 ABC transporter transmembrane region J0B03_11540 PF00005 ABC transporter J0B03_11545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J0B03_11545 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_11555 PF01613 Flavin reductase like domain J0B03_11555 PF00753 Metallo-beta-lactamase superfamily J0B03_11565 PF00107 Zinc-binding dehydrogenase J0B03_11565 PF08240 Alcohol dehydrogenase GroES-like domain J0B03_11570 PF00990 Diguanylate cyclase, GGDEF domain J0B03_11580 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_11580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J0B03_11600 PF00270 DEAD/DEAH box helicase J0B03_11600 PF00271 Helicase conserved C-terminal domain J0B03_11615 PF01384 Phosphate transporter family J0B03_11630 PF04073 Aminoacyl-tRNA editing domain J0B03_11635 PF01381 Helix-turn-helix J0B03_11640 PF01906 Putative heavy-metal-binding J0B03_11645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J0B03_11645 PF03466 LysR substrate binding domain J0B03_11650 PF00892 EamA-like transporter family J0B03_11670 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J0B03_11670 PF07992 Pyridine nucleotide-disulphide oxidoreductase J0B03_11675 PF03551 Transcriptional regulator PadR-like family J0B03_11675 PF10400 Virulence activator alpha C-term J0B03_11690 PF01116 Fructose-bisphosphate aldolase class-II J0B03_11715 PF00578 AhpC/TSA family J0B03_11720 PF02683 Cytochrome C biogenesis protein transmembrane region J0B03_11725 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain J0B03_11725 PF01522 Polysaccharide deacetylase J0B03_11730 PF00497 Bacterial extracellular solute-binding proteins, family 3 J0B03_11735 PF00497 Bacterial extracellular solute-binding proteins, family 3 J0B03_11740 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_11745 PF00528 Binding-protein-dependent transport system inner membrane component J0B03_11750 PF00005 ABC transporter J0B03_11755 PF02386 Cation transport protein J0B03_11760 PF02254 TrkA-N domain J0B03_11760 PF02080 TrkA-C domain J0B03_11770 PF05223 NTF2-like N-terminal transpeptidase domain J0B03_11770 PF03717 Penicillin-binding Protein dimerisation domain J0B03_11770 PF00905 Penicillin binding protein transpeptidase domain J0B03_11775 PF00731 AIR carboxylase J0B03_11780 PF02222 ATP-grasp domain J0B03_11780 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J0B03_11780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J0B03_11805 PF03773 Predicted permease J0B03_11810 PF01022 Bacterial regulatory protein, arsR family J0B03_11815 PF03193 RsgA GTPase J0B03_11845 PF13443 Cro/C1-type HTH DNA-binding domain J0B03_11850 PF11188 Protein of unknown function (DUF2975) J0B03_11865 PF02535 ZIP Zinc transporter J0B03_11875 PF08241 Methyltransferase domain J0B03_11890 PF03466 LysR substrate binding domain J0B03_11890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J0B03_11895 PF03601 Conserved hypothetical protein 698 J0B03_11900 PF03372 Endonuclease/Exonuclease/phosphatase family J0B03_11905 PF05958 tRNA (Uracil-5-)-methyltransferase J0B03_11915 PF00696 Amino acid kinase family J0B03_11920 PF00005 ABC transporter J0B03_11920 PF00664 ABC transporter transmembrane region J0B03_11925 PF02607 B12 binding domain J0B03_11925 PF02310 B12 binding domain J0B03_11935 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase J0B03_11935 PF00534 Glycosyl transferases group 1 J0B03_11940 PF01769 Divalent cation transporter J0B03_11940 PF03448 MgtE intracellular N domain J0B03_11940 PF00571 CBS domain J0B03_11945 PF00486 Transcriptional regulatory protein, C terminal J0B03_11945 PF00072 Response regulator receiver domain J0B03_11950 PF18698 Histidine kinase sensor domain J0B03_11950 PF00512 His Kinase A (phospho-acceptor) domain J0B03_11950 PF00989 PAS fold J0B03_11950 PF00672 HAMP domain J0B03_11950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J0B03_11955 PF10458 Valyl tRNA synthetase tRNA binding arm J0B03_11955 PF00133 tRNA synthetases class I (I, L, M and V) J0B03_11955 PF08264 Anticodon-binding domain of tRNA J0B03_11970 PF10437 Bacterial lipoate protein ligase C-terminus J0B03_11970 PF03099 Biotin/lipoate A/B protein ligase family J0B03_11975 PF13840 ACT domain J0B03_11975 PF01842 ACT domain J0B03_11975 PF00696 Amino acid kinase family J0B03_11980 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal J0B03_11980 PF14602 Hexapeptide repeat of succinyl-transferase J0B03_11980 PF00132 Bacterial transferase hexapeptide (six repeats) J0B03_11985 PF01113 Dihydrodipicolinate reductase, N-terminus J0B03_11985 PF05173 Dihydrodipicolinate reductase, C-terminus J0B03_11990 PF00701 Dihydrodipicolinate synthetase family J0B03_11995 PF01118 Semialdehyde dehydrogenase, NAD binding domain J0B03_11995 PF02774 Semialdehyde dehydrogenase, dimerisation domain J0B03_12000 PF07687 Peptidase dimerisation domain J0B03_12000 PF01546 Peptidase family M20/M25/M40 J0B03_12010 PF13649 Methyltransferase domain J0B03_12015 PF00313 'Cold-shock' DNA-binding domain J0B03_12020 PF01430 Hsp33 protein J0B03_12055 PF13443 Cro/C1-type HTH DNA-binding domain J0B03_12065 PF00977 Histidine biosynthesis protein J0B03_12070 PF17932 Tetracyclin repressor-like, C-terminal domain J0B03_12070 PF00440 Bacterial regulatory proteins, tetR family J0B03_12085 PF01546 Peptidase family M20/M25/M40 J0B03_12085 PF07687 Peptidase dimerisation domain J0B03_12110 PF02687 FtsX-like permease family J0B03_12110 PF12704 MacB-like periplasmic core domain J0B03_12110 PF00005 ABC transporter J0B03_12120 PF00005 ABC transporter J0B03_12130 PF03099 Biotin/lipoate A/B protein ligase family J0B03_12135 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J0B03_12135 PF04055 Radical SAM superfamily