locus-tag class description NNL22_00005 PF02096 60Kd inner membrane protein NNL22_00005 PF14849 YidC periplasmic domain NNL22_00010 PF01809 Putative membrane protein insertion efficiency factor NNL22_00015 PF00825 Ribonuclease P NNL22_00020 PF00468 Ribosomal protein L34 NNL22_00025 PF00308 Bacterial dnaA protein NNL22_00025 PF08299 Bacterial dnaA protein helix-turn-helix NNL22_00025 PF11638 DnaA N-terminal domain NNL22_00030 PF00712 DNA polymerase III beta subunit, N-terminal domain NNL22_00030 PF02767 DNA polymerase III beta subunit, central domain NNL22_00030 PF02768 DNA polymerase III beta subunit, C-terminal domain NNL22_00035 PF03109 ABC1 family NNL22_00045 PF02463 RecF/RecN/SMC N terminal domain NNL22_00050 PF01751 Toprim domain NNL22_00050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_00050 PF18053 DNA gyrase B subunit insert domain NNL22_00050 PF00204 DNA gyrase B NNL22_00050 PF00986 DNA gyrase B subunit, carboxyl terminus NNL22_00060 PF00005 ABC transporter NNL22_00060 PF00571 CBS domain NNL22_00065 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_00075 PF03279 Bacterial lipid A biosynthesis acyltransferase NNL22_00080 PF05746 DALR anticodon binding domain NNL22_00080 PF02092 Glycyl-tRNA synthetase beta subunit NNL22_00085 PF02091 Glycyl-tRNA synthetase alpha subunit NNL22_00090 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ NNL22_00105 PF02386 Cation transport protein NNL22_00110 PF02254 TrkA-N domain NNL22_00110 PF02080 TrkA-C domain NNL22_00115 PF01189 16S rRNA methyltransferase RsmB/F NNL22_00115 PF01029 NusB family NNL22_00120 PF02911 Formyl transferase, C-terminal domain NNL22_00120 PF00551 Formyl transferase NNL22_00125 PF01327 Polypeptide deformylase NNL22_00135 PF02481 DNA recombination-mediator protein A NNL22_00135 PF17782 DprA winged helix domain NNL22_00140 PF01300 Telomere recombination NNL22_00145 PF01218 Coproporphyrinogen III oxidase NNL22_00150 PF01488 Shikimate / quinate 5-dehydrogenase NNL22_00150 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NNL22_00150 PF08501 Shikimate dehydrogenase substrate binding domain NNL22_00155 PF01618 MotA/TolQ/ExbB proton channel family NNL22_00160 PF13677 Membrane MotB of proton-channel complex MotA/MotB NNL22_00160 PF00691 OmpA family NNL22_00170 PF00132 Bacterial transferase hexapeptide (six repeats) NNL22_00175 PF01432 Peptidase family M3 NNL22_00190 PF01554 MatE NNL22_00195 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NNL22_00195 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NNL22_00200 PF00115 Cytochrome C and Quinol oxidase polypeptide I NNL22_00205 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 NNL22_00210 PF00510 Cytochrome c oxidase subunit III NNL22_00230 PF02628 Cytochrome oxidase assembly protein NNL22_00235 PF01040 UbiA prenyltransferase family NNL22_00240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_00240 PF00072 Response regulator receiver domain NNL22_00240 PF13426 PAS domain NNL22_00300 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NNL22_00300 PF12833 Helix-turn-helix domain NNL22_00305 PF14864 Alkyl sulfatase C-terminal NNL22_00305 PF14863 Alkyl sulfatase dimerisation NNL22_00305 PF00753 Metallo-beta-lactamase superfamily NNL22_00310 PF01966 HD domain NNL22_00310 PF11871 Domain of unknown function (DUF3391) NNL22_00315 PF00144 Beta-lactamase NNL22_00330 PF00072 Response regulator receiver domain NNL22_00330 PF00672 HAMP domain NNL22_00330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_00330 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NNL22_00330 PF01627 Hpt domain NNL22_00330 PF00512 His Kinase A (phospho-acceptor) domain NNL22_00340 PF00072 Response regulator receiver domain NNL22_00380 PF07486 Cell Wall Hydrolase NNL22_00380 PF01471 Putative peptidoglycan binding domain NNL22_00395 PF06508 Queuosine biosynthesis protein QueC NNL22_00415 PF00487 Fatty acid desaturase NNL22_00420 PF00175 Oxidoreductase NAD-binding domain NNL22_00420 PF00970 Oxidoreductase FAD-binding domain NNL22_00420 PF00111 2Fe-2S iron-sulfur cluster binding domain NNL22_00430 PF00924 Mechanosensitive ion channel NNL22_00430 PF05552 Conserved TM helix NNL22_00440 PF00990 Diguanylate cyclase, GGDEF domain NNL22_00440 PF05230 MASE2 domain NNL22_00450 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NNL22_00450 PF00205 Thiamine pyrophosphate enzyme, central domain NNL22_00450 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NNL22_00455 PF07687 Peptidase dimerisation domain NNL22_00455 PF01546 Peptidase family M20/M25/M40 NNL22_00470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_00470 PF03466 LysR substrate binding domain NNL22_00475 PF10417 C-terminal domain of 1-Cys peroxiredoxin NNL22_00475 PF00578 AhpC/TSA family NNL22_00480 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_00480 PF13192 Thioredoxin domain NNL22_00485 PF00579 tRNA synthetases class I (W and Y) NNL22_00495 PF02743 Cache domain NNL22_00495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NNL22_00495 PF00672 HAMP domain NNL22_00505 PF00501 AMP-binding enzyme NNL22_00505 PF13193 AMP-binding enzyme C-terminal domain NNL22_00515 PF02469 Fasciclin domain NNL22_00525 PF00270 DEAD/DEAH box helicase NNL22_00525 PF00271 Helicase conserved C-terminal domain NNL22_00530 PF00072 Response regulator receiver domain NNL22_00530 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NNL22_00530 PF01627 Hpt domain NNL22_00530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_00530 PF00512 His Kinase A (phospho-acceptor) domain NNL22_00530 PF00672 HAMP domain NNL22_00535 PF00152 tRNA synthetases class II (D, K and N) NNL22_00535 PF01336 OB-fold nucleic acid binding domain NNL22_00555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NNL22_00555 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NNL22_00585 PF01425 Amidase NNL22_00590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_00590 PF03466 LysR substrate binding domain NNL22_00595 PF00005 ABC transporter NNL22_00595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NNL22_00600 PF00005 ABC transporter NNL22_00600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NNL22_00605 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_00605 PF12911 N-terminal TM domain of oligopeptide transport permease C NNL22_00610 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_00615 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_00620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NNL22_00630 PF06039 Malate:quinone oxidoreductase (Mqo) NNL22_00640 PF02230 Phospholipase/Carboxylesterase NNL22_00655 PF00682 HMGL-like NNL22_00655 PF08502 LeuA allosteric (dimerisation) domain NNL22_00660 PF01037 Lrp/AsnC ligand binding domain NNL22_00670 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal NNL22_00670 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal NNL22_00680 PF05661 Protein of unknown function (DUF808) NNL22_00690 PF01926 50S ribosome-binding GTPase NNL22_00700 PF00578 AhpC/TSA family NNL22_00710 PF00106 short chain dehydrogenase NNL22_00730 PF04304 Protein of unknown function (DUF454) NNL22_00735 PF12729 Four helix bundle sensory module for signal transduction NNL22_00735 PF00672 HAMP domain NNL22_00735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NNL22_00740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NNL22_00745 PF12843 Putative quorum-sensing-regulated virulence factor NNL22_00770 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NNL22_00770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NNL22_00780 PF01464 Transglycosylase SLT domain NNL22_00785 PF01205 Uncharacterized protein family UPF0029 NNL22_00785 PF09186 Domain of unknown function (DUF1949) NNL22_00790 PF00593 TonB dependent receptor NNL22_00790 PF07715 TonB-dependent Receptor Plug Domain NNL22_00805 PF01361 Tautomerase enzyme NNL22_00810 PF06779 Uncharacterised MFS-type transporter YbfB NNL22_00815 PF01641 SelR domain NNL22_00815 PF01625 Peptide methionine sulfoxide reductase NNL22_00830 PF00486 Transcriptional regulatory protein, C terminal NNL22_00830 PF00072 Response regulator receiver domain NNL22_00835 PF00512 His Kinase A (phospho-acceptor) domain NNL22_00835 PF18698 Histidine kinase sensor domain NNL22_00835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_00835 PF00672 HAMP domain NNL22_00835 PF00989 PAS fold NNL22_00840 PF02253 Phospholipase A1 NNL22_00845 PF01925 Sulfite exporter TauE/SafE NNL22_00860 PF07152 YaeQ protein NNL22_00865 PF00581 Rhodanese-like domain NNL22_00880 PF00672 HAMP domain NNL22_00880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_00880 PF00512 His Kinase A (phospho-acceptor) domain NNL22_00880 PF01627 Hpt domain NNL22_00880 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NNL22_00880 PF00072 Response regulator receiver domain NNL22_00890 PF12137 RNA polymerase recycling family C-terminal NNL22_00890 PF00176 SNF2 family N-terminal domain NNL22_00890 PF18339 RapA N-terminal Tudor like domain 1 NNL22_00890 PF18337 RapA N-terminal Tudor like domain NNL22_00890 PF00271 Helicase conserved C-terminal domain NNL22_00895 PF00106 short chain dehydrogenase NNL22_00905 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NNL22_00905 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NNL22_00905 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NNL22_00905 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NNL22_00915 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NNL22_00935 PF06794 Uncharacterised protein family (UPF0270) NNL22_00940 PF13411 MerR HTH family regulatory protein NNL22_00945 PF00106 short chain dehydrogenase NNL22_00950 PF00743 Flavin-binding monooxygenase-like NNL22_00975 PF00175 Oxidoreductase NAD-binding domain NNL22_00975 PF00970 Oxidoreductase FAD-binding domain NNL22_00975 PF00111 2Fe-2S iron-sulfur cluster binding domain NNL22_00980 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NNL22_00980 PF00378 Enoyl-CoA hydratase/isomerase NNL22_00980 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NNL22_01015 PF00994 Probable molybdopterin binding domain NNL22_01015 PF02464 Competence-damaged protein NNL22_01025 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NNL22_01030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NNL22_01035 PF00313 'Cold-shock' DNA-binding domain NNL22_01040 PF03880 DbpA RNA binding domain NNL22_01040 PF00270 DEAD/DEAH box helicase NNL22_01040 PF00271 Helicase conserved C-terminal domain NNL22_01060 PF06865 Pyrimidine/purine nucleoside phosphorylase NNL22_01065 PF00313 'Cold-shock' DNA-binding domain NNL22_01070 PF09997 Predicted membrane protein (DUF2238) NNL22_01090 PF12697 Alpha/beta hydrolase family NNL22_01120 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NNL22_01125 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NNL22_01130 PF03480 Bacterial extracellular solute-binding protein, family 7 NNL22_01135 PF02954 Bacterial regulatory protein, Fis family NNL22_01135 PF00158 Sigma-54 interaction domain NNL22_01135 PF00072 Response regulator receiver domain NNL22_01140 PF02743 Cache domain NNL22_01140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_01140 PF00512 His Kinase A (phospho-acceptor) domain NNL22_01150 PF01258 Prokaryotic dksA/traR C4-type zinc finger NNL22_01160 PF01227 GTP cyclohydrolase I NNL22_01170 PF02152 Dihydroneopterin aldolase NNL22_01175 PF00005 ABC transporter NNL22_01180 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_01185 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_01190 PF00497 Bacterial extracellular solute-binding proteins, family 3 NNL22_01200 PF03942 DTW domain NNL22_01205 PF08240 Alcohol dehydrogenase GroES-like domain NNL22_01205 PF00107 Zinc-binding dehydrogenase NNL22_01210 PF00571 CBS domain NNL22_01210 PF01743 Poly A polymerase head domain NNL22_01230 PF00899 ThiF family NNL22_01240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_01240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_01240 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_01240 PF12806 Acetyl-CoA dehydrogenase C-terminal like NNL22_01250 PF00266 Aminotransferase class-V NNL22_01255 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NNL22_01260 PF02277 Phosphoribosyltransferase NNL22_01270 PF12833 Helix-turn-helix domain NNL22_01270 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NNL22_01285 PF00578 AhpC/TSA family NNL22_01300 PF02424 ApbE family NNL22_01305 PF17171 Glutathione S-transferase, C-terminal domain NNL22_01305 PF17172 Glutathione S-transferase N-terminal domain NNL22_01310 PF17810 Arginine decarboxylase helical bundle domain NNL22_01310 PF17944 Arginine decarboxylase C-terminal helical extension NNL22_01310 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NNL22_01315 PF17284 Spermidine synthase tetramerisation domain NNL22_01325 PF00909 Ammonium Transporter Family NNL22_01330 PF00543 Nitrogen regulatory protein P-II NNL22_01335 PF04380 Membrane fusogenic activity NNL22_01340 PF01078 Magnesium chelatase, subunit ChlI NNL22_01340 PF13335 Magnesium chelatase, subunit ChlI C-terminal NNL22_01345 PF00005 ABC transporter NNL22_01350 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_01355 PF00005 ABC transporter NNL22_01365 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NNL22_01370 PF02390 Putative methyltransferase NNL22_01375 PF00072 Response regulator receiver domain NNL22_01375 PF00158 Sigma-54 interaction domain NNL22_01375 PF02954 Bacterial regulatory protein, Fis family NNL22_01380 PF04055 Radical SAM superfamily NNL22_01380 PF06969 HemN C-terminal domain NNL22_01385 PF01725 Ham1 family NNL22_01395 PF00561 alpha/beta hydrolase fold NNL22_01395 PF07021 Methionine biosynthesis protein MetW NNL22_01400 PF00561 alpha/beta hydrolase fold NNL22_01405 PF00350 Dynamin family NNL22_01410 PF02325 YGGT family NNL22_01415 PF03807 NADP oxidoreductase coenzyme F420-dependent NNL22_01415 PF14748 Pyrroline-5-carboxylate reductase dimerisation NNL22_01420 PF01168 Alanine racemase, N-terminal domain NNL22_01425 PF00437 Type II/IV secretion system protein NNL22_01430 PF00437 Type II/IV secretion system protein NNL22_01435 PF01367 5'-3' exonuclease, C-terminal SAM fold NNL22_01435 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NNL22_01435 PF00476 DNA polymerase family A NNL22_01435 PF01612 3'-5' exonuclease NNL22_01445 PF01636 Phosphotransferase enzyme family NNL22_01450 PF01136 Peptidase family U32 NNL22_01450 PF16325 Peptidase family U32 C-terminal domain NNL22_01470 PF00156 Phosphoribosyl transferase domain NNL22_01480 PF01138 3' exoribonuclease family, domain 1 NNL22_01480 PF03725 3' exoribonuclease family, domain 2 NNL22_01485 PF08340 Domain of unknown function (DUF1732) NNL22_01485 PF03755 YicC-like family, N-terminal region NNL22_01490 PF13657 HipA N-terminal domain NNL22_01490 PF07804 HipA-like C-terminal domain NNL22_01495 PF01381 Helix-turn-helix NNL22_01500 PF00378 Enoyl-CoA hydratase/isomerase NNL22_01505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NNL22_01505 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_01510 PF17934 Tetracyclin repressor-like, C-terminal domain NNL22_01510 PF00440 Bacterial regulatory proteins, tetR family NNL22_01545 PF01266 FAD dependent oxidoreductase NNL22_01550 PF01594 AI-2E family transporter NNL22_01555 PF00625 Guanylate kinase NNL22_01560 PF01192 RNA polymerase Rpb6 NNL22_01565 PF13291 ACT domain NNL22_01565 PF04607 Region found in RelA / SpoT proteins NNL22_01565 PF02824 TGS domain NNL22_01570 PF01042 Endoribonuclease L-PSP NNL22_01580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_01580 PF03466 LysR substrate binding domain NNL22_01585 PF00270 DEAD/DEAH box helicase NNL22_01585 PF00271 Helicase conserved C-terminal domain NNL22_01585 PF17191 RecG wedge domain NNL22_01600 PF03150 Di-haem cytochrome c peroxidase NNL22_01640 PF01593 Flavin containing amine oxidoreductase NNL22_01655 PF00672 HAMP domain NNL22_01655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NNL22_01665 PF04116 Fatty acid hydroxylase superfamily NNL22_01685 PF04546 Sigma-70, non-essential region NNL22_01685 PF03979 Sigma-70 factor, region 1.1 NNL22_01685 PF00140 Sigma-70 factor, region 1.2 NNL22_01685 PF04542 Sigma-70 region 2 NNL22_01685 PF04539 Sigma-70 region 3 NNL22_01685 PF04545 Sigma-70, region 4 NNL22_01690 PF10410 DnaB-helicase binding domain of primase NNL22_01690 PF08278 DNA primase DnaG DnaB-binding NNL22_01690 PF13662 Toprim domain NNL22_01690 PF08275 DNA primase catalytic core, N-terminal domain NNL22_01690 PF01807 CHC2 zinc finger NNL22_01695 PF09424 Yqey-like protein NNL22_01700 PF01165 Ribosomal protein S21 NNL22_01705 PF00814 Glycoprotease family NNL22_01710 PF02660 Glycerol-3-phosphate acyltransferase NNL22_01715 PF02152 Dihydroneopterin aldolase NNL22_01720 PF01227 GTP cyclohydrolase I NNL22_01720 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NNL22_01725 PF00342 Phosphoglucose isomerase NNL22_01730 PF02569 Pantoate-beta-alanine ligase NNL22_01735 PF02548 Ketopantoate hydroxymethyltransferase NNL22_01740 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NNL22_01745 PF12626 Polymerase A arginine-rich C-terminus NNL22_01745 PF01743 Poly A polymerase head domain NNL22_01745 PF12627 Probable RNA and SrmB- binding site of polymerase A NNL22_01750 PF00072 Response regulator receiver domain NNL22_01750 PF00158 Sigma-54 interaction domain NNL22_01750 PF02954 Bacterial regulatory protein, Fis family NNL22_01755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_01755 PF00512 His Kinase A (phospho-acceptor) domain NNL22_01755 PF00989 PAS fold NNL22_01755 PF08447 PAS fold NNL22_01760 PF00749 tRNA synthetases class I (E and Q), catalytic domain NNL22_01765 PF01258 Prokaryotic dksA/traR C4-type zinc finger NNL22_01770 PF03749 Sugar fermentation stimulation protein RE domain NNL22_01770 PF17746 SfsA N-terminal OB domain NNL22_01790 PF00196 Bacterial regulatory proteins, luxR family NNL22_01790 PF00072 Response regulator receiver domain NNL22_01800 PF00905 Penicillin binding protein transpeptidase domain NNL22_01800 PF00912 Transglycosylase NNL22_01800 PF14814 Bifunctional transglycosylase second domain NNL22_01810 PF00202 Aminotransferase class-III NNL22_01815 PF02581 Thiamine monophosphate synthase NNL22_01820 PF08543 Phosphomethylpyrimidine kinase NNL22_01820 PF02581 Thiamine monophosphate synthase NNL22_01825 PF03653 Uncharacterised protein family (UPF0093) NNL22_01835 PF01118 Semialdehyde dehydrogenase, NAD binding domain NNL22_01835 PF02774 Semialdehyde dehydrogenase, dimerisation domain NNL22_01850 PF01521 Iron-sulphur cluster biosynthesis NNL22_01855 PF03702 Anhydro-N-acetylmuramic acid kinase NNL22_01860 PF04225 Opacity-associated protein A LysM-like domain NNL22_01860 PF01551 Peptidase family M23 NNL22_01865 PF00579 tRNA synthetases class I (W and Y) NNL22_01915 PF03099 Biotin/lipoate A/B protein ligase family NNL22_01915 PF08279 HTH domain NNL22_01915 PF02237 Biotin protein ligase C terminal domain NNL22_01920 PF03309 Type III pantothenate kinase NNL22_01955 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NNL22_01960 PF00467 KOW motif NNL22_01960 PF02357 Transcription termination factor nusG NNL22_01965 PF00298 Ribosomal protein L11, RNA binding domain NNL22_01965 PF03946 Ribosomal protein L11, N-terminal domain NNL22_01970 PF00687 Ribosomal protein L1p/L10e family NNL22_01975 PF00466 Ribosomal protein L10 NNL22_01980 PF00542 Ribosomal protein L7/L12 C-terminal domain NNL22_01980 PF16320 Ribosomal protein L7/L12 dimerisation domain NNL22_01985 PF00562 RNA polymerase Rpb2, domain 6 NNL22_01985 PF04560 RNA polymerase Rpb2, domain 7 NNL22_01985 PF10385 RNA polymerase beta subunit external 1 domain NNL22_01985 PF04565 RNA polymerase Rpb2, domain 3 NNL22_01985 PF04561 RNA polymerase Rpb2, domain 2 NNL22_01985 PF04563 RNA polymerase beta subunit NNL22_01990 PF04997 RNA polymerase Rpb1, domain 1 NNL22_01990 PF00623 RNA polymerase Rpb1, domain 2 NNL22_01990 PF04983 RNA polymerase Rpb1, domain 3 NNL22_01990 PF05000 RNA polymerase Rpb1, domain 4 NNL22_01990 PF04998 RNA polymerase Rpb1, domain 5 NNL22_01995 PF00164 Ribosomal protein S12/S23 NNL22_02000 PF00177 Ribosomal protein S7p/S5e NNL22_02005 PF03144 Elongation factor Tu domain 2 NNL22_02005 PF03764 Elongation factor G, domain IV NNL22_02005 PF00009 Elongation factor Tu GTP binding domain NNL22_02005 PF00679 Elongation factor G C-terminus NNL22_02005 PF14492 Elongation Factor G, domain II NNL22_02010 PF00009 Elongation factor Tu GTP binding domain NNL22_02010 PF03144 Elongation factor Tu domain 2 NNL22_02010 PF03143 Elongation factor Tu C-terminal domain NNL22_02015 PF00338 Ribosomal protein S10p/S20e NNL22_02020 PF00297 Ribosomal protein L3 NNL22_02025 PF00573 Ribosomal protein L4/L1 family NNL22_02030 PF00276 Ribosomal protein L23 NNL22_02035 PF00181 Ribosomal Proteins L2, RNA binding domain NNL22_02035 PF03947 Ribosomal Proteins L2, C-terminal domain NNL22_02040 PF00203 Ribosomal protein S19 NNL22_02045 PF00237 Ribosomal protein L22p/L17e NNL22_02050 PF00189 Ribosomal protein S3, C-terminal domain NNL22_02050 PF07650 KH domain NNL22_02055 PF00252 Ribosomal protein L16p/L10e NNL22_02060 PF00831 Ribosomal L29 protein NNL22_02065 PF00366 Ribosomal protein S17 NNL22_02070 PF00238 Ribosomal protein L14p/L23e NNL22_02075 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NNL22_02075 PF00467 KOW motif NNL22_02080 PF00673 ribosomal L5P family C-terminus NNL22_02080 PF00281 Ribosomal protein L5 NNL22_02085 PF00253 Ribosomal protein S14p/S29e NNL22_02090 PF00410 Ribosomal protein S8 NNL22_02095 PF00347 Ribosomal protein L6 NNL22_02100 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NNL22_02105 PF03719 Ribosomal protein S5, C-terminal domain NNL22_02105 PF00333 Ribosomal protein S5, N-terminal domain NNL22_02110 PF00327 Ribosomal protein L30p/L7e NNL22_02115 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NNL22_02120 PF00344 SecY translocase NNL22_02125 PF00444 Ribosomal protein L36 NNL22_02130 PF00416 Ribosomal protein S13/S18 NNL22_02135 PF00411 Ribosomal protein S11 NNL22_02140 PF01479 S4 domain NNL22_02140 PF00163 Ribosomal protein S4/S9 N-terminal domain NNL22_02145 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NNL22_02145 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NNL22_02145 PF01000 RNA polymerase Rpb3/RpoA insert domain NNL22_02150 PF01196 Ribosomal protein L17 NNL22_02155 PF17755 UvrA DNA-binding domain NNL22_02155 PF17760 UvrA interaction domain NNL22_02160 PF07690 Major Facilitator Superfamily NNL22_02165 PF00436 Single-strand binding protein family NNL22_02170 PF02743 Cache domain NNL22_02170 PF00672 HAMP domain NNL22_02170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NNL22_02175 PF00696 Amino acid kinase family NNL22_02175 PF13840 ACT domain NNL22_02180 PF06339 Ectoine synthase NNL22_02190 PF00202 Aminotransferase class-III NNL22_02195 PF00583 Acetyltransferase (GNAT) family NNL22_02225 PF00263 Bacterial type II and III secretion system protein NNL22_02225 PF03958 Bacterial type II/III secretion system short domain NNL22_02230 PF13401 AAA domain NNL22_02230 PF01471 Putative peptidoglycan binding domain NNL22_02240 PF00437 Type II/IV secretion system protein NNL22_02240 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NNL22_02245 PF00482 Type II secretion system (T2SS), protein F NNL22_02275 PF00114 Pilin (bacterial filament) NNL22_02275 PF07963 Prokaryotic N-terminal methylation motif NNL22_02285 PF12791 Anti-sigma factor N-terminus NNL22_02285 PF07691 PA14 domain NNL22_02290 PF00072 Response regulator receiver domain NNL22_02290 PF00158 Sigma-54 interaction domain NNL22_02290 PF02954 Bacterial regulatory protein, Fis family NNL22_02295 PF00989 PAS fold NNL22_02295 PF00512 His Kinase A (phospho-acceptor) domain NNL22_02295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_02305 PF03951 Glutamine synthetase, beta-Grasp domain NNL22_02305 PF00120 Glutamine synthetase, catalytic domain NNL22_02310 PF00009 Elongation factor Tu GTP binding domain NNL22_02310 PF00679 Elongation factor G C-terminus NNL22_02310 PF03144 Elongation factor Tu domain 2 NNL22_02315 PF00561 alpha/beta hydrolase fold NNL22_02320 PF02580 D-Tyr-tRNA(Tyr) deacylase NNL22_02325 PF13609 Gram-negative porin NNL22_02360 PF04362 Bacterial Fe(2+) trafficking NNL22_02365 PF00360 Phytochrome region NNL22_02365 PF01590 GAF domain NNL22_02365 PF00563 EAL domain NNL22_02365 PF00990 Diguanylate cyclase, GGDEF domain NNL22_02370 PF00633 Helix-hairpin-helix motif NNL22_02370 PF00730 HhH-GPD superfamily base excision DNA repair protein NNL22_02370 PF14815 NUDIX domain NNL22_02385 PF00475 Imidazoleglycerol-phosphate dehydratase NNL22_02390 PF00117 Glutamine amidotransferase class-I NNL22_02395 PF00977 Histidine biosynthesis protein NNL22_02405 PF04748 Divergent polysaccharide deacetylase NNL22_02415 PF01551 Peptidase family M23 NNL22_02420 PF01676 Metalloenzyme superfamily NNL22_02420 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NNL22_02425 PF00581 Rhodanese-like domain NNL22_02430 PF00462 Glutaredoxin NNL22_02435 PF02556 Preprotein translocase subunit SecB NNL22_02440 PF00588 SpoU rRNA Methylase family NNL22_02445 PF02803 Thiolase, C-terminal domain NNL22_02445 PF00108 Thiolase, N-terminal domain NNL22_02455 PF12627 Probable RNA and SrmB- binding site of polymerase A NNL22_02455 PF01966 HD domain NNL22_02455 PF01743 Poly A polymerase head domain NNL22_02470 PF08245 Mur ligase middle domain NNL22_02470 PF02875 Mur ligase family, glutamate ligase domain NNL22_02470 PF01225 Mur ligase family, catalytic domain NNL22_02475 PF02441 Flavoprotein NNL22_02480 PF01243 Pyridoxamine 5'-phosphate oxidase NNL22_02485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_02485 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_02485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_02495 PF05199 GMC oxidoreductase NNL22_02505 PF00860 Permease family NNL22_02510 PF08207 Elongation factor P (EF-P) KOW-like domain NNL22_02510 PF09285 Elongation factor P, C-terminal NNL22_02510 PF01132 Elongation factor P (EF-P) OB domain NNL22_02515 PF12557 Cob(I)alamin adenosyltransferase N terminal NNL22_02515 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP NNL22_02525 PF07685 CobB/CobQ-like glutamine amidotransferase domain NNL22_02525 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NNL22_02530 PF04324 BFD-like [2Fe-2S] binding domain NNL22_02535 PF00210 Ferritin-like domain NNL22_02540 PF00210 Ferritin-like domain NNL22_02555 PF00156 Phosphoribosyl transferase domain NNL22_02560 PF06968 Biotin and Thiamin Synthesis associated domain NNL22_02560 PF04055 Radical SAM superfamily NNL22_02565 PF00155 Aminotransferase class I and II NNL22_02570 PF12697 Alpha/beta hydrolase family NNL22_02570 PF08241 Methyltransferase domain NNL22_02575 PF08241 Methyltransferase domain NNL22_02575 PF12697 Alpha/beta hydrolase family NNL22_02595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_02595 PF12806 Acetyl-CoA dehydrogenase C-terminal like NNL22_02595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_02595 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_02600 PF12806 Acetyl-CoA dehydrogenase C-terminal like NNL22_02600 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_02600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_02600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_02615 PF14840 Processivity clamp loader gamma complex DNA pol III C-term NNL22_02615 PF06144 DNA polymerase III, delta subunit NNL22_02620 PF04390 Lipopolysaccharide-assembly NNL22_02625 PF08264 Anticodon-binding domain of tRNA NNL22_02625 PF00133 tRNA synthetases class I (I, L, M and V) NNL22_02625 PF13603 Leucyl-tRNA synthetase, Domain 2 NNL22_02635 PF00795 Carbon-nitrogen hydrolase NNL22_02640 PF00571 CBS domain NNL22_02640 PF03471 Transporter associated domain NNL22_02645 PF02130 Uncharacterized protein family UPF0054 NNL22_02650 PF02562 PhoH-like protein NNL22_02665 PF12105 SpoU, rRNA methylase, C-terminal NNL22_02665 PF00588 SpoU rRNA Methylase family NNL22_02670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_02670 PF03466 LysR substrate binding domain NNL22_02680 PF00270 DEAD/DEAH box helicase NNL22_02680 PF03880 DbpA RNA binding domain NNL22_02680 PF00271 Helicase conserved C-terminal domain NNL22_02685 PF01554 MatE NNL22_02690 PF12833 Helix-turn-helix domain NNL22_02695 PF00561 alpha/beta hydrolase fold NNL22_02700 PF00990 Diguanylate cyclase, GGDEF domain NNL22_02700 PF00360 Phytochrome region NNL22_02700 PF00563 EAL domain NNL22_02700 PF01590 GAF domain NNL22_02715 PF00128 Alpha amylase, catalytic domain NNL22_02730 PF00291 Pyridoxal-phosphate dependent enzyme NNL22_02740 PF04245 37-kD nucleoid-associated bacterial protein NNL22_02745 PF00009 Elongation factor Tu GTP binding domain NNL22_02750 PF01507 Phosphoadenosine phosphosulfate reductase family NNL22_02765 PF04286 Protein of unknown function (DUF445) NNL22_02790 PF00919 Uncharacterized protein family UPF0004 NNL22_02790 PF18693 TRAM domain NNL22_02790 PF04055 Radical SAM superfamily NNL22_02795 PF01648 4'-phosphopantetheinyl transferase superfamily NNL22_02800 PF00512 His Kinase A (phospho-acceptor) domain NNL22_02800 PF00072 Response regulator receiver domain NNL22_02800 PF01627 Hpt domain NNL22_02800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_02800 PF00672 HAMP domain NNL22_02800 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NNL22_02805 PF00291 Pyridoxal-phosphate dependent enzyme NNL22_02810 PF05958 tRNA (Uracil-5-)-methyltransferase NNL22_02815 PF02824 TGS domain NNL22_02815 PF04607 Region found in RelA / SpoT proteins NNL22_02815 PF13291 ACT domain NNL22_02820 PF03819 MazG nucleotide pyrophosphohydrolase domain NNL22_02825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NNL22_02825 PF00205 Thiamine pyrophosphate enzyme, central domain NNL22_02825 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NNL22_02860 PF00563 EAL domain NNL22_02860 PF00990 Diguanylate cyclase, GGDEF domain NNL22_02860 PF08448 PAS fold NNL22_02865 PF00072 Response regulator receiver domain NNL22_02870 PF01590 GAF domain NNL22_02870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_02870 PF00512 His Kinase A (phospho-acceptor) domain NNL22_02870 PF08446 PAS fold NNL22_02870 PF00360 Phytochrome region NNL22_02890 PF00311 Phosphoenolpyruvate carboxylase NNL22_02900 PF05191 Adenylate kinase, active site lid NNL22_02905 PF00814 Glycoprotease family NNL22_02910 PF02673 Bacitracin resistance protein BacA NNL22_02920 PF04445 Putative SAM-dependent methyltransferase NNL22_02925 PF01553 Acyltransferase NNL22_02930 PF00005 ABC transporter NNL22_02945 PF01177 Asp/Glu/Hydantoin racemase NNL22_02950 PF00497 Bacterial extracellular solute-binding proteins, family 3 NNL22_02965 PF00563 EAL domain NNL22_02965 PF00990 Diguanylate cyclase, GGDEF domain NNL22_02965 PF03707 Bacterial signalling protein N terminal repeat NNL22_02970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_02970 PF00512 His Kinase A (phospho-acceptor) domain NNL22_02980 PF05448 Acetyl xylan esterase (AXE1) NNL22_02990 PF00501 AMP-binding enzyme NNL22_02990 PF13193 AMP-binding enzyme C-terminal domain NNL22_02990 PF16177 Acetyl-coenzyme A synthetase N-terminus NNL22_02995 PF00196 Bacterial regulatory proteins, luxR family NNL22_02995 PF00072 Response regulator receiver domain NNL22_03000 PF00990 Diguanylate cyclase, GGDEF domain NNL22_03005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_03005 PF03466 LysR substrate binding domain NNL22_03010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_03010 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_03010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_03040 PF07733 Bacterial DNA polymerase III alpha NTPase domain NNL22_03040 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NNL22_03040 PF14579 Helix-hairpin-helix motif NNL22_03040 PF02811 PHP domain NNL22_03040 PF01336 OB-fold nucleic acid binding domain NNL22_03055 PF00990 Diguanylate cyclase, GGDEF domain NNL22_03055 PF03707 Bacterial signalling protein N terminal repeat NNL22_03055 PF00563 EAL domain NNL22_03060 PF00072 Response regulator receiver domain NNL22_03060 PF01627 Hpt domain NNL22_03060 PF00672 HAMP domain NNL22_03060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_03060 PF00512 His Kinase A (phospho-acceptor) domain NNL22_03070 PF00474 Sodium:solute symporter family NNL22_03075 PF13673 Acetyltransferase (GNAT) domain NNL22_03080 PF03458 UPF0126 domain NNL22_03085 PF11490 DNA polymerase III polC-type N-terminus II NNL22_03085 PF14480 DNA polymerase III polC-type N-terminus I NNL22_03085 PF14579 Helix-hairpin-helix motif NNL22_03085 PF02811 PHP domain NNL22_03085 PF00929 Exonuclease NNL22_03085 PF07733 Bacterial DNA polymerase III alpha NTPase domain NNL22_03085 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NNL22_03095 PF01713 Smr domain NNL22_03105 PF00596 Class II Aldolase and Adducin N-terminal domain NNL22_03110 PF03079 ARD/ARD' family NNL22_03115 PF13419 Haloacid dehalogenase-like hydrolase NNL22_03130 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NNL22_03150 PF00069 Protein kinase domain NNL22_03155 PF05638 Type VI secretion system effector, Hcp NNL22_03190 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NNL22_03190 PF00437 Type II/IV secretion system protein NNL22_03200 PF03358 NADPH-dependent FMN reductase NNL22_03205 PF03960 ArsC family NNL22_03210 PF00578 AhpC/TSA family NNL22_03220 PF01336 OB-fold nucleic acid binding domain NNL22_03220 PF02811 PHP domain NNL22_03220 PF14579 Helix-hairpin-helix motif NNL22_03220 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NNL22_03220 PF07733 Bacterial DNA polymerase III alpha NTPase domain NNL22_03225 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NNL22_03230 PF11734 TilS substrate C-terminal domain NNL22_03230 PF09179 TilS substrate binding domain NNL22_03230 PF01171 PP-loop family NNL22_03235 PF06418 CTP synthase N-terminus NNL22_03235 PF00117 Glutamine amidotransferase class-I NNL22_03240 PF00793 DAHP synthetase I family NNL22_03245 PF00113 Enolase, C-terminal TIM barrel domain NNL22_03245 PF03952 Enolase, N-terminal domain NNL22_03250 PF04977 Septum formation initiator NNL22_03255 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NNL22_03260 PF02542 YgbB family NNL22_03265 PF01142 tRNA pseudouridine synthase D (TruD) NNL22_03270 PF01975 Survival protein SurE NNL22_03285 PF01476 LysM domain NNL22_03285 PF01551 Peptidase family M23 NNL22_03290 PF00140 Sigma-70 factor, region 1.2 NNL22_03290 PF04542 Sigma-70 region 2 NNL22_03290 PF04539 Sigma-70 region 3 NNL22_03290 PF04545 Sigma-70, region 4 NNL22_03305 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_03310 PF00005 ABC transporter NNL22_03310 PF03459 TOBE domain NNL22_03320 PF10576 Iron-sulfur binding domain of endonuclease III NNL22_03320 PF00633 Helix-hairpin-helix motif NNL22_03320 PF00730 HhH-GPD superfamily base excision DNA repair protein NNL22_03325 PF02508 Rnf-Nqr subunit, membrane protein NNL22_03330 PF04205 FMN-binding domain NNL22_03335 PF03116 NQR2, RnfD, RnfE family NNL22_03340 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NNL22_03340 PF10531 SLBB domain NNL22_03340 PF13237 4Fe-4S dicluster domain NNL22_03340 PF13375 RnfC Barrel sandwich hybrid domain NNL22_03345 PF04060 Putative Fe-S cluster NNL22_03350 PF02508 Rnf-Nqr subunit, membrane protein NNL22_03355 PF09334 tRNA synthetases class I (M) NNL22_03355 PF01588 Putative tRNA binding domain NNL22_03360 PF10609 NUBPL iron-transfer P-loop NTPase NNL22_03370 PF03649 Uncharacterised protein family (UPF0014) NNL22_03375 PF00005 ABC transporter NNL22_03380 PF00692 dUTPase NNL22_03385 PF07690 Major Facilitator Superfamily NNL22_03400 PF00155 Aminotransferase class I and II NNL22_03405 PF00990 Diguanylate cyclase, GGDEF domain NNL22_03410 PF01209 ubiE/COQ5 methyltransferase family NNL22_03415 PF01263 Aldose 1-epimerase NNL22_03420 PF01554 MatE NNL22_03435 PF17773 UPF0176 acylphosphatase like domain NNL22_03435 PF00581 Rhodanese-like domain NNL22_03445 PF00989 PAS fold NNL22_03445 PF08447 PAS fold NNL22_03445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_03445 PF00512 His Kinase A (phospho-acceptor) domain NNL22_03450 PF00072 Response regulator receiver domain NNL22_03450 PF08448 PAS fold NNL22_03450 PF00512 His Kinase A (phospho-acceptor) domain NNL22_03450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_03450 PF13188 PAS domain NNL22_03455 PF00072 Response regulator receiver domain NNL22_03460 PF02954 Bacterial regulatory protein, Fis family NNL22_03460 PF00072 Response regulator receiver domain NNL22_03460 PF00158 Sigma-54 interaction domain NNL22_03465 PF00990 Diguanylate cyclase, GGDEF domain NNL22_03465 PF00072 Response regulator receiver domain NNL22_03470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_03470 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_03470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_03490 PF00072 Response regulator receiver domain NNL22_03510 PF00850 Histone deacetylase domain NNL22_03525 PF13419 Haloacid dehalogenase-like hydrolase NNL22_03530 PF00762 Ferrochelatase NNL22_03545 PF00990 Diguanylate cyclase, GGDEF domain NNL22_03550 PF12833 Helix-turn-helix domain NNL22_03555 PF02515 CoA-transferase family III NNL22_03560 PF12833 Helix-turn-helix domain NNL22_03560 PF12852 Cupin NNL22_03565 PF01565 FAD binding domain NNL22_03565 PF02913 FAD linked oxidases, C-terminal domain NNL22_03570 PF01266 FAD dependent oxidoreductase NNL22_03570 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NNL22_03575 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NNL22_03575 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NNL22_03580 PF00072 Response regulator receiver domain NNL22_03585 PF04461 Protein of unknown function (DUF520) NNL22_03590 PF07690 Major Facilitator Superfamily NNL22_03595 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NNL22_03605 PF04186 FxsA cytoplasmic membrane protein NNL22_03610 PF00166 Chaperonin 10 Kd subunit NNL22_03615 PF00118 TCP-1/cpn60 chaperonin family NNL22_03630 PF03958 Bacterial type II/III secretion system short domain NNL22_03630 PF00263 Bacterial type II and III secretion system protein NNL22_03635 PF01435 Peptidase family M48 NNL22_03640 PF04011 LemA family NNL22_03645 PF03707 Bacterial signalling protein N terminal repeat NNL22_03645 PF00990 Diguanylate cyclase, GGDEF domain NNL22_03645 PF00563 EAL domain NNL22_03650 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NNL22_03650 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NNL22_03655 PF02222 ATP-grasp domain NNL22_03655 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NNL22_03660 PF00731 AIR carboxylase NNL22_03735 PF01513 ATP-NAD kinase NNL22_03740 PF00149 Calcineurin-like phosphoesterase NNL22_03745 PF01694 Rhomboid family NNL22_03745 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease NNL22_03760 PF01433 Peptidase family M1 domain NNL22_03760 PF11940 Domain of unknown function (DUF3458) Ig-like fold NNL22_03760 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NNL22_03765 PF07044 Protein of unknown function (DUF1329) NNL22_03780 PF16868 NMT1-like family NNL22_03790 PF03129 Anticodon binding domain NNL22_03790 PF02824 TGS domain NNL22_03790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NNL22_03790 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NNL22_03795 PF00707 Translation initiation factor IF-3, C-terminal domain NNL22_03795 PF05198 Translation initiation factor IF-3, N-terminal domain NNL22_03800 PF01632 Ribosomal protein L35 NNL22_03805 PF00453 Ribosomal protein L20 NNL22_03810 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NNL22_03810 PF01409 tRNA synthetases class II core domain (F) NNL22_03815 PF03483 B3/4 domain NNL22_03815 PF03484 tRNA synthetase B5 domain NNL22_03815 PF03147 Ferredoxin-fold anticodon binding domain NNL22_03815 PF01588 Putative tRNA binding domain NNL22_03815 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NNL22_03820 PF00216 Bacterial DNA-binding protein NNL22_03835 PF02798 Glutathione S-transferase, N-terminal domain NNL22_03840 PF16124 RecQ zinc-binding NNL22_03840 PF00271 Helicase conserved C-terminal domain NNL22_03840 PF09382 RQC domain NNL22_03840 PF00570 HRDC domain NNL22_03840 PF00270 DEAD/DEAH box helicase NNL22_03845 PF02646 RmuC family NNL22_03850 PF00563 EAL domain NNL22_03850 PF00990 Diguanylate cyclase, GGDEF domain NNL22_03850 PF08448 PAS fold NNL22_03865 PF07728 AAA domain (dynein-related subfamily) NNL22_03865 PF08406 CbbQ/NirQ/NorQ C-terminal NNL22_03885 PF10414 Sirohaem synthase dimerisation region NNL22_03885 PF14824 Sirohaem biosynthesis protein central NNL22_03885 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NNL22_03890 PF04055 Radical SAM superfamily NNL22_03890 PF13186 Iron-sulfur cluster-binding domain NNL22_03895 PF17805 AsnC-like ligand binding domain NNL22_03900 PF17805 AsnC-like ligand binding domain NNL22_03900 PF13404 AsnC-type helix-turn-helix domain NNL22_03905 PF17805 AsnC-like ligand binding domain NNL22_03910 PF17805 AsnC-like ligand binding domain NNL22_03920 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NNL22_03940 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NNL22_03945 PF00034 Cytochrome c NNL22_03950 PF00115 Cytochrome C and Quinol oxidase polypeptide I NNL22_03965 PF00510 Cytochrome c oxidase subunit III NNL22_03980 PF00753 Metallo-beta-lactamase superfamily NNL22_03980 PF12706 Beta-lactamase superfamily domain NNL22_03985 PF08668 HDOD domain NNL22_04000 PF00106 short chain dehydrogenase NNL22_04005 PF00155 Aminotransferase class I and II NNL22_04015 PF00294 pfkB family carbohydrate kinase NNL22_04025 PF16736 Single Cache-like NNL22_04025 PF00989 PAS fold NNL22_04025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_04025 PF00512 His Kinase A (phospho-acceptor) domain NNL22_04035 PF00072 Response regulator receiver domain NNL22_04035 PF00486 Transcriptional regulatory protein, C terminal NNL22_04040 PF01131 DNA topoisomerase NNL22_04040 PF01751 Toprim domain NNL22_04045 PF01722 BolA-like protein NNL22_04050 PF01300 Telomere recombination NNL22_04115 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system NNL22_04130 PF00700 Bacterial flagellin C-terminal helical region NNL22_04130 PF00669 Bacterial flagellin N-terminal helical region NNL22_04140 PF00700 Bacterial flagellin C-terminal helical region NNL22_04140 PF08884 Flagellin D3 domain NNL22_04140 PF00669 Bacterial flagellin N-terminal helical region NNL22_04150 PF07196 Flagellin hook IN motif NNL22_04150 PF07195 Flagellar hook-associated protein 2 C-terminus NNL22_04150 PF02465 Flagellar hook-associated protein 2 N-terminus NNL22_04155 PF02561 Flagellar protein FliS NNL22_04165 PF00850 Histone deacetylase domain NNL22_04170 PF13607 Succinyl-CoA ligase like flavodoxin domain NNL22_04170 PF13380 CoA binding domain NNL22_04170 PF00583 Acetyltransferase (GNAT) family NNL22_04175 PF04381 Putative exonuclease, RdgC NNL22_04185 PF03883 Peroxide stress protein YaaA NNL22_04200 PF07584 Aerotolerance regulator N-terminal NNL22_04200 PF00092 von Willebrand factor type A domain NNL22_04215 PF01882 Protein of unknown function DUF58 NNL22_04220 PF07726 ATPase family associated with various cellular activities (AAA) NNL22_04220 PF17863 AAA lid domain NNL22_04225 PF05088 Bacterial NAD-glutamate dehydrogenase NNL22_04240 PF04073 Aminoacyl-tRNA editing domain NNL22_04240 PF03129 Anticodon binding domain NNL22_04240 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NNL22_04245 PF02601 Exonuclease VII, large subunit NNL22_04245 PF13742 OB-fold nucleic acid binding domain NNL22_04250 PF00478 IMP dehydrogenase / GMP reductase domain NNL22_04250 PF00571 CBS domain NNL22_04255 PF00117 Glutamine amidotransferase class-I NNL22_04255 PF00958 GMP synthase C terminal domain NNL22_04255 PF02540 NAD synthase NNL22_04260 PF14437 MafB19-like deaminase NNL22_04265 PF01370 NAD dependent epimerase/dehydratase family NNL22_04270 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NNL22_04270 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NNL22_04270 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NNL22_04280 PF00440 Bacterial regulatory proteins, tetR family NNL22_04285 PF00072 Response regulator receiver domain NNL22_04285 PF01966 HD domain NNL22_04295 PF01336 OB-fold nucleic acid binding domain NNL22_04295 PF02938 GAD domain NNL22_04295 PF00152 tRNA synthetases class II (D, K and N) NNL22_04300 PF02075 Crossover junction endodeoxyribonuclease RuvC NNL22_04305 PF07499 RuvA, C-terminal domain NNL22_04305 PF01330 RuvA N terminal domain NNL22_04310 PF17864 RuvB AAA lid domain NNL22_04310 PF05491 RuvB C-terminal winged helix domain NNL22_04310 PF05496 Holliday junction DNA helicase RuvB P-loop domain NNL22_04315 PF03061 Thioesterase superfamily NNL22_04320 PF01618 MotA/TolQ/ExbB proton channel family NNL22_04325 PF02472 Biopolymer transport protein ExbD/TolR NNL22_04335 PF04052 TolB amino-terminal domain NNL22_04335 PF07676 WD40-like Beta Propeller Repeat NNL22_04340 PF00691 OmpA family NNL22_04345 PF16331 TolA binding protein trimerisation NNL22_04345 PF13525 Outer membrane lipoprotein NNL22_04360 PF02445 Quinolinate synthetase A protein NNL22_04365 PF01435 Peptidase family M48 NNL22_04370 PF01206 Sulfurtransferase TusA NNL22_04375 PF01594 AI-2E family transporter NNL22_04385 PF00578 AhpC/TSA family NNL22_04390 PF01842 ACT domain NNL22_04395 PF00701 Dihydrodipicolinate synthetase family NNL22_04405 PF01259 SAICAR synthetase NNL22_04415 PF01370 NAD dependent epimerase/dehydratase family NNL22_04435 PF02661 Fic/DOC family NNL22_04465 PF00483 Nucleotidyl transferase NNL22_04475 PF03477 ATP cone domain NNL22_04475 PF02867 Ribonucleotide reductase, barrel domain NNL22_04475 PF00317 Ribonucleotide reductase, all-alpha domain NNL22_04500 PF13439 Glycosyltransferase Family 4 NNL22_04500 PF00534 Glycosyl transferases group 1 NNL22_04505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NNL22_04510 PF00873 AcrB/AcrD/AcrF family NNL22_04540 PF00069 Protein kinase domain NNL22_04540 PF03793 PASTA domain NNL22_04545 PF00005 ABC transporter NNL22_04550 PF02653 Branched-chain amino acid transport system / permease component NNL22_04570 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_04600 PF00005 ABC transporter NNL22_04605 PF01061 ABC-2 type transporter NNL22_04610 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NNL22_04610 PF14489 QueF-like protein NNL22_04615 PF00211 Adenylate and Guanylate cyclase catalytic domain NNL22_04620 PF00881 Nitroreductase family NNL22_04625 PF00460 Flagella basal body rod protein NNL22_04630 PF00460 Flagella basal body rod protein NNL22_04630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NNL22_04635 PF03963 Flagellar hook capping protein - N-terminal region NNL22_04640 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NNL22_04640 PF07559 Flagellar basal body protein FlaE NNL22_04640 PF00460 Flagella basal body rod protein NNL22_04645 PF00460 Flagella basal body rod protein NNL22_04645 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NNL22_04650 PF00460 Flagella basal body rod protein NNL22_04650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NNL22_04655 PF02107 Flagellar L-ring protein NNL22_04660 PF02119 Flagellar P-ring protein NNL22_04665 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NNL22_04665 PF10135 Rod binding protein NNL22_04675 PF00669 Bacterial flagellin N-terminal helical region NNL22_04690 PF02547 Queuosine biosynthesis protein NNL22_04695 PF01702 Queuine tRNA-ribosyltransferase NNL22_04700 PF02699 Preprotein translocase subunit NNL22_04705 PF07549 SecD/SecF GG Motif NNL22_04705 PF13721 SecD export protein N-terminal TM region NNL22_04705 PF02355 Protein export membrane protein NNL22_04710 PF07549 SecD/SecF GG Motif NNL22_04710 PF02355 Protein export membrane protein NNL22_04715 PF00459 Inositol monophosphatase family NNL22_04720 PF00588 SpoU rRNA Methylase family NNL22_04725 PF00132 Bacterial transferase hexapeptide (six repeats) NNL22_04730 PF02082 Transcriptional regulator NNL22_04735 PF00266 Aminotransferase class-V NNL22_04740 PF00334 Nucleoside diphosphate kinase NNL22_04745 PF04055 Radical SAM superfamily NNL22_04755 PF13464 Domain of unknown function (DUF4115) NNL22_04760 PF04551 GcpE protein NNL22_04765 PF03129 Anticodon binding domain NNL22_04765 PF13393 Histidyl-tRNA synthetase NNL22_04770 PF09976 Tetratricopeptide repeat-like domain NNL22_04775 PF13360 PQQ-like domain NNL22_04785 PF01515 Phosphate acetyl/butaryl transferase NNL22_04785 PF07085 DRTGG domain NNL22_04790 PF00871 Acetokinase family NNL22_04795 PF00990 Diguanylate cyclase, GGDEF domain NNL22_04795 PF03707 Bacterial signalling protein N terminal repeat NNL22_04795 PF00563 EAL domain NNL22_04800 PF08668 HDOD domain NNL22_04800 PF00563 EAL domain NNL22_04830 PF01584 CheW-like domain NNL22_04830 PF00072 Response regulator receiver domain NNL22_04835 PF00111 2Fe-2S iron-sulfur cluster binding domain NNL22_04835 PF03473 MOSC domain NNL22_04835 PF03476 MOSC N-terminal beta barrel domain NNL22_04845 PF16326 ABC transporter C-terminal domain NNL22_04845 PF12848 ABC transporter NNL22_04845 PF00005 ABC transporter NNL22_04855 PF00582 Universal stress protein family NNL22_04870 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NNL22_04870 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NNL22_04870 PF00378 Enoyl-CoA hydratase/isomerase NNL22_04875 PF00108 Thiolase, N-terminal domain NNL22_04875 PF02803 Thiolase, C-terminal domain NNL22_04885 PF01396 Topoisomerase DNA binding C4 zinc finger NNL22_04885 PF01751 Toprim domain NNL22_04885 PF08272 Topoisomerase I zinc-ribbon-like NNL22_04885 PF01131 DNA topoisomerase NNL22_04890 PF00285 Citrate synthase, C-terminal domain NNL22_04895 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NNL22_04900 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NNL22_04905 PF00890 FAD binding domain NNL22_04905 PF02910 Fumarate reductase flavoprotein C-term NNL22_04910 PF13085 2Fe-2S iron-sulfur cluster binding domain NNL22_04915 PF16078 2-oxoglutarate dehydrogenase N-terminus NNL22_04915 PF00676 Dehydrogenase E1 component NNL22_04915 PF16870 2-oxoglutarate dehydrogenase C-terminal NNL22_04915 PF02779 Transketolase, pyrimidine binding domain NNL22_04920 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NNL22_04920 PF00364 Biotin-requiring enzyme NNL22_04920 PF02817 e3 binding domain NNL22_04925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NNL22_04925 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_04930 PF08442 ATP-grasp domain NNL22_04930 PF00549 CoA-ligase NNL22_04935 PF02629 CoA binding domain NNL22_04935 PF00549 CoA-ligase NNL22_04940 PF00579 tRNA synthetases class I (W and Y) NNL22_04945 PF02616 Segregation and condensation protein ScpA NNL22_04950 PF04079 Segregation and condensation complex subunit ScpB NNL22_04955 PF00849 RNA pseudouridylate synthase NNL22_04955 PF01479 S4 domain NNL22_04960 PF00990 Diguanylate cyclase, GGDEF domain NNL22_04970 PF06470 SMC proteins Flexible Hinge Domain NNL22_04970 PF02463 RecF/RecN/SMC N terminal domain NNL22_04975 PF04354 ZipA, C-terminal FtsZ-binding domain NNL22_04980 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NNL22_04980 PF00533 BRCA1 C Terminus (BRCT) domain NNL22_04980 PF01653 NAD-dependent DNA ligase adenylation domain NNL22_04980 PF12826 Helix-hairpin-helix motif NNL22_04980 PF03120 NAD-dependent DNA ligase OB-fold domain NNL22_04985 PF12833 Helix-turn-helix domain NNL22_04985 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NNL22_05000 PF01266 FAD dependent oxidoreductase NNL22_05000 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NNL22_05005 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NNL22_05030 PF00072 Response regulator receiver domain NNL22_05030 PF01584 CheW-like domain NNL22_05035 PF01739 CheR methyltransferase, SAM binding domain NNL22_05035 PF03705 CheR methyltransferase, all-alpha domain NNL22_05045 PF04545 Sigma-70, region 4 NNL22_05045 PF04542 Sigma-70 region 2 NNL22_05050 PF03441 FAD binding domain of DNA photolyase NNL22_05050 PF00875 DNA photolyase NNL22_05100 PF04542 Sigma-70 region 2 NNL22_05100 PF03979 Sigma-70 factor, region 1.1 NNL22_05100 PF04546 Sigma-70, non-essential region NNL22_05100 PF00140 Sigma-70 factor, region 1.2 NNL22_05100 PF04539 Sigma-70 region 3 NNL22_05100 PF04545 Sigma-70, region 4 NNL22_05115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_05115 PF12806 Acetyl-CoA dehydrogenase C-terminal like NNL22_05115 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_05115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_05125 PF02954 Bacterial regulatory protein, Fis family NNL22_05125 PF00072 Response regulator receiver domain NNL22_05125 PF00158 Sigma-54 interaction domain NNL22_05130 PF00072 Response regulator receiver domain NNL22_05135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_05135 PF00512 His Kinase A (phospho-acceptor) domain NNL22_05135 PF01627 Hpt domain NNL22_05135 PF00672 HAMP domain NNL22_05135 PF00072 Response regulator receiver domain NNL22_05135 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NNL22_05145 PF13614 AAA domain NNL22_05160 PF01740 STAS domain NNL22_05165 PF02397 Bacterial sugar transferase NNL22_05170 PF00535 Glycosyl transferase family 2 NNL22_05195 PF12464 Maltose acetyltransferase NNL22_05195 PF00132 Bacterial transferase hexapeptide (six repeats) NNL22_05205 PF00534 Glycosyl transferases group 1 NNL22_05205 PF13439 Glycosyltransferase Family 4 NNL22_05220 PF00535 Glycosyl transferase family 2 NNL22_05225 PF00990 Diguanylate cyclase, GGDEF domain NNL22_05235 PF07995 Glucose / Sorbosone dehydrogenase NNL22_05245 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NNL22_05255 PF00248 Aldo/keto reductase family NNL22_05260 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NNL22_05260 PF12169 DNA polymerase III subunits gamma and tau domain III NNL22_05260 PF12170 DNA polymerase III tau subunit V interacting with alpha NNL22_05265 PF02575 YbaB/EbfC DNA-binding family NNL22_05270 PF02132 RecR protein NNL22_05270 PF13662 Toprim domain NNL22_05275 PF01612 3'-5' exonuclease NNL22_05275 PF00570 HRDC domain NNL22_05280 PF05166 YcgL domain NNL22_05285 PF03692 Putative zinc- or iron-chelating domain NNL22_05305 PF13230 Glutamine amidotransferases class-II NNL22_05310 PF00291 Pyridoxal-phosphate dependent enzyme NNL22_05315 PF10431 C-terminal, D2-small domain, of ClpB protein NNL22_05315 PF02861 Clp amino terminal domain, pathogenicity island component NNL22_05315 PF17871 AAA lid domain NNL22_05315 PF07724 AAA domain (Cdc48 subfamily) NNL22_05315 PF00004 ATPase family associated with various cellular activities (AAA) NNL22_05350 PF01618 MotA/TolQ/ExbB proton channel family NNL22_05370 PF01575 MaoC like domain NNL22_05375 PF12146 Serine aminopeptidase, S33 NNL22_05380 PF13193 AMP-binding enzyme C-terminal domain NNL22_05380 PF00501 AMP-binding enzyme NNL22_05385 PF00270 DEAD/DEAH box helicase NNL22_05385 PF11898 Domain of unknown function (DUF3418) NNL22_05385 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NNL22_05385 PF00271 Helicase conserved C-terminal domain NNL22_05385 PF04408 Helicase associated domain (HA2) NNL22_05390 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NNL22_05390 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NNL22_05395 PF04333 MlaA lipoprotein NNL22_05420 PF13307 Helicase C-terminal domain NNL22_05420 PF06733 DEAD_2 NNL22_05425 PF00196 Bacterial regulatory proteins, luxR family NNL22_05425 PF17874 MalT-like TPR region NNL22_05430 PF01925 Sulfite exporter TauE/SafE NNL22_05435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_05435 PF03466 LysR substrate binding domain NNL22_05440 PF01507 Phosphoadenosine phosphosulfate reductase family NNL22_05450 PF04715 Anthranilate synthase component I, N terminal region NNL22_05450 PF00425 chorismate binding enzyme NNL22_05500 PF11992 Domain of unknown function (DUF3488) NNL22_05500 PF13559 Domain of unknown function (DUF4129) NNL22_05500 PF01841 Transglutaminase-like superfamily NNL22_05505 PF09115 DNA polymerase III, delta subunit, C terminal NNL22_05515 PF01026 TatD related DNase NNL22_05520 PF00561 alpha/beta hydrolase fold NNL22_05530 PF01734 Patatin-like phospholipase NNL22_05535 PF05175 Methyltransferase small domain NNL22_05540 PF01264 Chorismate synthase NNL22_05555 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus NNL22_05555 PF00561 alpha/beta hydrolase fold NNL22_05560 PF03466 LysR substrate binding domain NNL22_05560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_05565 PF00330 Aconitase family (aconitate hydratase) NNL22_05570 PF00694 Aconitase C-terminal domain NNL22_05575 PF00180 Isocitrate/isopropylmalate dehydrogenase NNL22_05580 PF02774 Semialdehyde dehydrogenase, dimerisation domain NNL22_05580 PF01118 Semialdehyde dehydrogenase, NAD binding domain NNL22_05590 PF01416 tRNA pseudouridine synthase NNL22_05595 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NNL22_05600 PF00291 Pyridoxal-phosphate dependent enzyme NNL22_05605 PF00290 Tryptophan synthase alpha chain NNL22_05610 PF17848 Acetyl-coA carboxylase zinc finger domain NNL22_05610 PF01039 Carboxyl transferase domain NNL22_05615 PF08245 Mur ligase middle domain NNL22_05615 PF02875 Mur ligase family, glutamate ligase domain NNL22_05625 PF02674 Colicin V production protein NNL22_05630 PF00156 Phosphoribosyl transferase domain NNL22_05635 PF01053 Cys/Met metabolism PLP-dependent enzyme NNL22_05640 PF01580 FtsK/SpoIIIE family NNL22_05640 PF09397 Ftsk gamma domain NNL22_05640 PF17854 FtsK alpha domain NNL22_05640 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NNL22_05645 PF03548 Outer membrane lipoprotein carrier protein LolA NNL22_05650 PF00004 ATPase family associated with various cellular activities (AAA) NNL22_05650 PF16193 AAA C-terminal domain NNL22_05650 PF12002 MgsA AAA+ ATPase C terminal NNL22_05655 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NNL22_05660 PF02403 Seryl-tRNA synthetase N-terminal domain NNL22_05660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NNL22_05665 PF10414 Sirohaem synthase dimerisation region NNL22_05665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NNL22_05670 PF00793 DAHP synthetase I family NNL22_05685 PF00563 EAL domain NNL22_05685 PF00990 Diguanylate cyclase, GGDEF domain NNL22_05685 PF03707 Bacterial signalling protein N terminal repeat NNL22_05690 PF12697 Alpha/beta hydrolase family NNL22_05700 PF00005 ABC transporter NNL22_05700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NNL22_05705 PF12911 N-terminal TM domain of oligopeptide transport permease C NNL22_05705 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_05710 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_05715 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NNL22_05720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NNL22_05730 PF01464 Transglycosylase SLT domain NNL22_05730 PF01476 LysM domain NNL22_05735 PF00753 Metallo-beta-lactamase superfamily NNL22_05735 PF16123 Hydroxyacylglutathione hydrolase C-terminus NNL22_05745 PF00075 RNase H NNL22_05750 PF00929 Exonuclease NNL22_05770 PF08496 Peptidase family S49 N-terminal NNL22_05770 PF01343 Peptidase family S49 NNL22_05775 PF02254 TrkA-N domain NNL22_05775 PF00999 Sodium/hydrogen exchanger family NNL22_05785 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NNL22_05785 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NNL22_05790 PF02310 B12 binding domain NNL22_05790 PF02574 Homocysteine S-methyltransferase NNL22_05790 PF02607 B12 binding domain NNL22_05790 PF02965 Vitamin B12 dependent methionine synthase, activation domain NNL22_05790 PF00809 Pterin binding enzyme NNL22_05795 PF01521 Iron-sulphur cluster biosynthesis NNL22_05795 PF01106 NifU-like domain NNL22_05800 PF04286 Protein of unknown function (DUF445) NNL22_05805 PF02885 Glycosyl transferase family, helical bundle domain NNL22_05805 PF00591 Glycosyl transferase family, a/b domain NNL22_05810 PF04358 DsrC like protein NNL22_05815 PF02635 DsrE/DsrF-like family NNL22_05820 PF02635 DsrE/DsrF-like family NNL22_05825 PF01027 Inhibitor of apoptosis-promoting Bax1 NNL22_05840 PF00196 Bacterial regulatory proteins, luxR family NNL22_05840 PF00072 Response regulator receiver domain NNL22_05845 PF01541 GIY-YIG catalytic domain NNL22_05845 PF02151 UvrB/uvrC motif NNL22_05845 PF08459 UvrC Helix-hairpin-helix N-terminal NNL22_05850 PF01066 CDP-alcohol phosphatidyltransferase NNL22_05875 PF01863 Protein of unknown function DUF45 NNL22_05890 PF00465 Iron-containing alcohol dehydrogenase NNL22_05895 PF00672 HAMP domain NNL22_05895 PF00512 His Kinase A (phospho-acceptor) domain NNL22_05895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_05895 PF01627 Hpt domain NNL22_05895 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NNL22_05895 PF00072 Response regulator receiver domain NNL22_05910 PF01274 Malate synthase NNL22_05920 PF08007 Cupin superfamily protein NNL22_05925 PF08328 Adenylosuccinate lyase C-terminal NNL22_05925 PF00206 Lyase NNL22_05930 PF04356 Protein of unknown function (DUF489) NNL22_05940 PF00293 NUDIX domain NNL22_05945 PF00849 RNA pseudouridylate synthase NNL22_05955 PF02617 ATP-dependent Clp protease adaptor protein ClpS NNL22_05960 PF17871 AAA lid domain NNL22_05960 PF02861 Clp amino terminal domain, pathogenicity island component NNL22_05960 PF10431 C-terminal, D2-small domain, of ClpB protein NNL22_05960 PF00004 ATPase family associated with various cellular activities (AAA) NNL22_05960 PF07724 AAA domain (Cdc48 subfamily) NNL22_05965 PF01176 Translation initiation factor 1A / IF-1 NNL22_05970 PF04376 Arginine-tRNA-protein transferase, N terminus NNL22_05970 PF04377 Arginine-tRNA-protein transferase, C terminus NNL22_05975 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NNL22_05980 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_05985 PF17863 AAA lid domain NNL22_05985 PF07726 ATPase family associated with various cellular activities (AAA) NNL22_05995 PF04371 Porphyromonas-type peptidyl-arginine deiminase NNL22_06010 PF02687 FtsX-like permease family NNL22_06010 PF12704 MacB-like periplasmic core domain NNL22_06015 PF00005 ABC transporter NNL22_06025 PF03772 Competence protein NNL22_06025 PF13567 Domain of unknown function (DUF4131) NNL22_06025 PF00753 Metallo-beta-lactamase superfamily NNL22_06030 PF01618 MotA/TolQ/ExbB proton channel family NNL22_06035 PF02472 Biopolymer transport protein ExbD/TolR NNL22_06040 PF00664 ABC transporter transmembrane region NNL22_06040 PF00005 ABC transporter NNL22_06045 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NNL22_06050 PF03966 Trm112p-like protein NNL22_06055 PF02348 Cytidylyltransferase NNL22_06060 PF01451 Low molecular weight phosphotyrosine protein phosphatase NNL22_06065 PF01565 FAD binding domain NNL22_06065 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NNL22_06075 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NNL22_06075 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NNL22_06075 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NNL22_06080 PF02397 Bacterial sugar transferase NNL22_06095 PF13614 AAA domain NNL22_06105 PF01522 Polysaccharide deacetylase NNL22_06115 PF00534 Glycosyl transferases group 1 NNL22_06115 PF13439 Glycosyltransferase Family 4 NNL22_06125 PF00535 Glycosyl transferase family 2 NNL22_06130 PF14883 Hypothetical glycosyl hydrolase family 13 NNL22_06130 PF01522 Polysaccharide deacetylase NNL22_06135 PF13439 Glycosyltransferase Family 4 NNL22_06135 PF00534 Glycosyl transferases group 1 NNL22_06140 PF00535 Glycosyl transferase family 2 NNL22_06150 PF01522 Polysaccharide deacetylase NNL22_06170 PF00535 Glycosyl transferase family 2 NNL22_06175 PF13537 Glutamine amidotransferase domain NNL22_06175 PF00733 Asparagine synthase NNL22_06225 PF02954 Bacterial regulatory protein, Fis family NNL22_06225 PF00158 Sigma-54 interaction domain NNL22_06225 PF00072 Response regulator receiver domain NNL22_06230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_06230 PF00512 His Kinase A (phospho-acceptor) domain NNL22_06245 PF01553 Acyltransferase NNL22_06260 PF08361 MAATS-type transcriptional repressor, C-terminal region NNL22_06260 PF00440 Bacterial regulatory proteins, tetR family NNL22_06265 PF03372 Endonuclease/Exonuclease/phosphatase family NNL22_06275 PF02954 Bacterial regulatory protein, Fis family NNL22_06275 PF00072 Response regulator receiver domain NNL22_06275 PF00158 Sigma-54 interaction domain NNL22_06285 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NNL22_06285 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NNL22_06295 PF00300 Histidine phosphatase superfamily (branch 1) NNL22_06300 PF02954 Bacterial regulatory protein, Fis family NNL22_06300 PF00072 Response regulator receiver domain NNL22_06300 PF00158 Sigma-54 interaction domain NNL22_06330 PF00266 Aminotransferase class-V NNL22_06350 PF01012 Electron transfer flavoprotein domain NNL22_06355 PF01012 Electron transfer flavoprotein domain NNL22_06355 PF00766 Electron transfer flavoprotein FAD-binding domain NNL22_06370 PF13291 ACT domain NNL22_06370 PF04607 Region found in RelA / SpoT proteins NNL22_06370 PF02824 TGS domain NNL22_06375 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NNL22_06375 PF12833 Helix-turn-helix domain NNL22_06380 PF01228 Glycine radical NNL22_06380 PF02901 Pyruvate formate lyase-like NNL22_06385 PF04055 Radical SAM superfamily NNL22_06400 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NNL22_06400 PF00384 Molybdopterin oxidoreductase NNL22_06400 PF01568 Molydopterin dinucleotide binding domain NNL22_06405 PF02311 AraC-like ligand binding domain NNL22_06405 PF12833 Helix-turn-helix domain NNL22_06410 PF00501 AMP-binding enzyme NNL22_06410 PF13193 AMP-binding enzyme C-terminal domain NNL22_06415 PF00132 Bacterial transferase hexapeptide (six repeats) NNL22_06420 PF02913 FAD linked oxidases, C-terminal domain NNL22_06420 PF01565 FAD binding domain NNL22_06435 PF00501 AMP-binding enzyme NNL22_06435 PF13193 AMP-binding enzyme C-terminal domain NNL22_06440 PF00682 HMGL-like NNL22_06445 PF18140 Propionyl-coenzyme A carboxylase BT domain NNL22_06445 PF02785 Biotin carboxylase C-terminal domain NNL22_06445 PF00364 Biotin-requiring enzyme NNL22_06445 PF00289 Biotin carboxylase, N-terminal domain NNL22_06445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NNL22_06455 PF01039 Carboxyl transferase domain NNL22_06460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_06460 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_06460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_06480 PF00437 Type II/IV secretion system protein NNL22_06485 PF00482 Type II secretion system (T2SS), protein F NNL22_06490 PF07963 Prokaryotic N-terminal methylation motif NNL22_06490 PF08334 Type II secretion system (T2SS), protein G NNL22_06495 PF12019 Type II transport protein GspH NNL22_06495 PF07963 Prokaryotic N-terminal methylation motif NNL22_06500 PF07963 Prokaryotic N-terminal methylation motif NNL22_06500 PF02501 Type II secretion system (T2SS), protein I NNL22_06505 PF11612 Type II secretion system (T2SS), protein J NNL22_06505 PF07963 Prokaryotic N-terminal methylation motif NNL22_06510 PF03934 Type II secretion system (T2SS), protein K NNL22_06515 PF05134 Type II secretion system (T2SS), protein L NNL22_06515 PF12693 GspL periplasmic domain NNL22_06530 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_06530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NNL22_06535 PF00202 Aminotransferase class-III NNL22_06535 PF06968 Biotin and Thiamin Synthesis associated domain NNL22_06535 PF04055 Radical SAM superfamily NNL22_06540 PF00072 Response regulator receiver domain NNL22_06550 PF10371 Domain of unknown function NNL22_06550 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NNL22_06550 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NNL22_06550 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NNL22_06550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NNL22_06560 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_06560 PF00403 Heavy-metal-associated domain NNL22_06560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NNL22_06570 PF01590 GAF domain NNL22_06570 PF00360 Phytochrome region NNL22_06570 PF00563 EAL domain NNL22_06570 PF00990 Diguanylate cyclase, GGDEF domain NNL22_06575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_06575 PF03466 LysR substrate binding domain NNL22_06600 PF13091 PLD-like domain NNL22_06600 PF13396 Phospholipase_D-nuclease N-terminal NNL22_06610 PF03060 Nitronate monooxygenase NNL22_06615 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NNL22_06615 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NNL22_06615 PF00378 Enoyl-CoA hydratase/isomerase NNL22_06645 PF01526 Tn3 transposase DDE domain NNL22_06645 PF13700 Domain of unknown function (DUF4158) NNL22_06650 PF01734 Patatin-like phospholipase NNL22_06655 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NNL22_06655 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NNL22_06655 PF00378 Enoyl-CoA hydratase/isomerase NNL22_06660 PF00171 Aldehyde dehydrogenase family NNL22_06670 PF00465 Iron-containing alcohol dehydrogenase NNL22_06675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_06675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_06675 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_06675 PF12806 Acetyl-CoA dehydrogenase C-terminal like NNL22_06680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_06680 PF03466 LysR substrate binding domain NNL22_06685 PF12833 Helix-turn-helix domain NNL22_06685 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NNL22_06730 PF00529 HlyD membrane-fusion protein of T1SS NNL22_06730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NNL22_06740 PF00873 AcrB/AcrD/AcrF family NNL22_06755 PF13411 MerR HTH family regulatory protein NNL22_06760 PF00403 Heavy-metal-associated domain NNL22_06795 PF05275 Copper resistance protein B precursor (CopB) NNL22_06800 PF00394 Multicopper oxidase NNL22_06800 PF07731 Multicopper oxidase NNL22_06800 PF07732 Multicopper oxidase NNL22_06855 PF00072 Response regulator receiver domain NNL22_06855 PF00486 Transcriptional regulatory protein, C terminal NNL22_06860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_06875 PF00924 Mechanosensitive ion channel NNL22_06875 PF05552 Conserved TM helix NNL22_06885 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NNL22_06925 PF00756 Putative esterase NNL22_06930 PF00107 Zinc-binding dehydrogenase NNL22_06930 PF08240 Alcohol dehydrogenase GroES-like domain NNL22_06935 PF03466 LysR substrate binding domain NNL22_06935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_06955 PF01081 KDPG and KHG aldolase NNL22_06960 PF00920 Dehydratase family NNL22_06965 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NNL22_06970 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NNL22_06970 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NNL22_06975 PF03793 PASTA domain NNL22_06975 PF00069 Protein kinase domain NNL22_06980 PF01226 Formate/nitrite transporter NNL22_06985 PF02560 Cyanate lyase C-terminal domain NNL22_06990 PF17754 MftR C-terminal domain NNL22_06990 PF00440 Bacterial regulatory proteins, tetR family NNL22_07000 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_07000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NNL22_07005 PF16177 Acetyl-coenzyme A synthetase N-terminus NNL22_07005 PF00501 AMP-binding enzyme NNL22_07005 PF13193 AMP-binding enzyme C-terminal domain NNL22_07010 PF00075 RNase H NNL22_07025 PF01131 DNA topoisomerase NNL22_07025 PF01751 Toprim domain NNL22_07035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_07035 PF12806 Acetyl-CoA dehydrogenase C-terminal like NNL22_07035 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_07035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_07050 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NNL22_07050 PF00384 Molybdopterin oxidoreductase NNL22_07050 PF01568 Molydopterin dinucleotide binding domain NNL22_07180 PF09234 Domain of unknown function (DUF1963) NNL22_07270 PF01145 SPFH domain / Band 7 family NNL22_07305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_07305 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_07305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_07325 PF11842 Domain of unknown function (DUF3362) NNL22_07325 PF04055 Radical SAM superfamily NNL22_07325 PF08497 Radical SAM N-terminal NNL22_07345 PF00563 EAL domain NNL22_07345 PF00990 Diguanylate cyclase, GGDEF domain NNL22_07345 PF03707 Bacterial signalling protein N terminal repeat NNL22_07360 PF02630 SCO1/SenC NNL22_07375 PF00072 Response regulator receiver domain NNL22_07375 PF00486 Transcriptional regulatory protein, C terminal NNL22_07395 PF05368 NmrA-like family NNL22_07400 PF13538 UvrD-like helicase C-terminal domain NNL22_07405 PF12705 PD-(D/E)XK nuclease superfamily NNL22_07405 PF00580 UvrD/REP helicase N-terminal domain NNL22_07405 PF13361 UvrD-like helicase C-terminal domain NNL22_07410 PF17946 RecC C-terminal domain NNL22_07425 PF00849 RNA pseudouridylate synthase NNL22_07430 PF01758 Sodium Bile acid symporter family NNL22_07435 PF01047 MarR family NNL22_07440 PF00255 Glutathione peroxidase NNL22_07450 PF00155 Aminotransferase class I and II NNL22_07460 PF17785 PUA-like domain NNL22_07460 PF10672 S-adenosylmethionine-dependent methyltransferase NNL22_07475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NNL22_07475 PF11890 Domain of unknown function (DUF3410) NNL22_07475 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NNL22_07480 PF00271 Helicase conserved C-terminal domain NNL22_07480 PF00270 DEAD/DEAH box helicase NNL22_07485 PF04315 Elongation factor P hydroxylase NNL22_07490 PF02683 Cytochrome C biogenesis protein transmembrane region NNL22_07490 PF11412 Disulphide bond corrector protein DsbC NNL22_07495 PF01206 Sulfurtransferase TusA NNL22_07505 PF18125 RlmM ferredoxin-like domain NNL22_07505 PF01728 FtsJ-like methyltransferase NNL22_07510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NNL22_07510 PF17200 Single Cache domain 2 NNL22_07510 PF00672 HAMP domain NNL22_07515 PF00027 Cyclic nucleotide-binding domain NNL22_07515 PF00325 Bacterial regulatory proteins, crp family NNL22_07520 PF00115 Cytochrome C and Quinol oxidase polypeptide I NNL22_07535 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NNL22_07535 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP NNL22_07540 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NNL22_07540 PF12801 4Fe-4S binding domain NNL22_07540 PF13746 4Fe-4S dicluster domain NNL22_07550 PF00403 Heavy-metal-associated domain NNL22_07555 PF03597 Cytochrome oxidase maturation protein cbb3-type NNL22_07565 PF06969 HemN C-terminal domain NNL22_07565 PF04055 Radical SAM superfamily NNL22_07570 PF00156 Phosphoribosyl transferase domain NNL22_07580 PF01171 PP-loop family NNL22_07585 PF00440 Bacterial regulatory proteins, tetR family NNL22_07585 PF08359 YsiA-like protein, C-terminal region NNL22_07595 PF05099 Tellurite resistance protein TerB NNL22_07595 PF00226 DnaJ domain NNL22_07625 PF13145 PPIC-type PPIASE domain NNL22_07630 PF00216 Bacterial DNA-binding protein NNL22_07635 PF00004 ATPase family associated with various cellular activities (AAA) NNL22_07635 PF05362 Lon protease (S16) C-terminal proteolytic domain NNL22_07635 PF02190 ATP-dependent protease La (LON) substrate-binding domain NNL22_07640 PF10431 C-terminal, D2-small domain, of ClpB protein NNL22_07640 PF07724 AAA domain (Cdc48 subfamily) NNL22_07640 PF06689 ClpX C4-type zinc finger NNL22_07645 PF00574 Clp protease NNL22_07650 PF05697 Bacterial trigger factor protein (TF) NNL22_07650 PF05698 Bacterial trigger factor protein (TF) C-terminus NNL22_07650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NNL22_07675 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NNL22_07675 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NNL22_07680 PF09190 DALR domain NNL22_07680 PF01406 tRNA synthetases class I (C) catalytic domain NNL22_07685 PF00749 tRNA synthetases class I (E and Q), catalytic domain NNL22_07685 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NNL22_07690 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NNL22_07695 PF12850 Calcineurin-like phosphoesterase superfamily domain NNL22_07700 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NNL22_07705 PF00330 Aconitase family (aconitate hydratase) NNL22_07705 PF06434 Aconitate hydratase 2 N-terminus NNL22_07705 PF11791 Aconitate B N-terminal domain NNL22_07710 PF00571 CBS domain NNL22_07720 PF14765 Polyketide synthase dehydratase NNL22_07720 PF00550 Phosphopantetheine attachment site NNL22_07720 PF08659 KR domain NNL22_07720 PF02801 Beta-ketoacyl synthase, C-terminal domain NNL22_07720 PF00109 Beta-ketoacyl synthase, N-terminal domain NNL22_07720 PF16197 Ketoacyl-synthetase C-terminal extension NNL22_07720 PF00698 Acyl transferase domain NNL22_07720 PF08240 Alcohol dehydrogenase GroES-like domain NNL22_07725 PF03328 HpcH/HpaI aldolase/citrate lyase family NNL22_07735 PF02515 CoA-transferase family III NNL22_07740 PF16197 Ketoacyl-synthetase C-terminal extension NNL22_07740 PF02801 Beta-ketoacyl synthase, C-terminal domain NNL22_07740 PF08659 KR domain NNL22_07740 PF00550 Phosphopantetheine attachment site NNL22_07740 PF08240 Alcohol dehydrogenase GroES-like domain NNL22_07740 PF00698 Acyl transferase domain NNL22_07740 PF00109 Beta-ketoacyl synthase, N-terminal domain NNL22_07740 PF14765 Polyketide synthase dehydratase NNL22_07745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_07745 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_07745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_07750 PF02310 B12 binding domain NNL22_07750 PF01642 Methylmalonyl-CoA mutase NNL22_07760 PF00107 Zinc-binding dehydrogenase NNL22_07760 PF08240 Alcohol dehydrogenase GroES-like domain NNL22_07770 PF01435 Peptidase family M48 NNL22_07775 PF02223 Thymidylate kinase NNL22_07780 PF02618 YceG-like family NNL22_07785 PF01063 Amino-transferase class IV NNL22_07790 PF00109 Beta-ketoacyl synthase, N-terminal domain NNL22_07790 PF02801 Beta-ketoacyl synthase, C-terminal domain NNL22_07795 PF00550 Phosphopantetheine attachment site NNL22_07805 PF00698 Acyl transferase domain NNL22_07810 PF02504 Fatty acid synthesis protein NNL22_07815 PF01783 Ribosomal L32p protein family NNL22_07820 PF02620 Large ribosomal RNA subunit accumulation protein YceD NNL22_07825 PF02545 Maf-like protein NNL22_07830 PF06965 Na+/H+ antiporter 1 NNL22_07830 PF01343 Peptidase family S49 NNL22_07835 PF13419 Haloacid dehalogenase-like hydrolase NNL22_07840 PF01479 S4 domain NNL22_07840 PF00849 RNA pseudouridylate synthase NNL22_07845 PF10150 Ribonuclease E/G family NNL22_07845 PF12111 Polyribonucleotide phosphorylase C terminal NNL22_07845 PF00575 S1 RNA binding domain NNL22_07855 PF00072 Response regulator receiver domain NNL22_07855 PF00990 Diguanylate cyclase, GGDEF domain NNL22_07870 PF02811 PHP domain NNL22_07875 PF03795 YCII-related domain NNL22_07890 PF03737 Aldolase/RraA NNL22_07905 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NNL22_07905 PF00391 PEP-utilising enzyme, mobile domain NNL22_07905 PF02896 PEP-utilising enzyme, TIM barrel domain NNL22_07910 PF03618 Kinase/pyrophosphorylase NNL22_07915 PF05193 Peptidase M16 inactive domain NNL22_07915 PF00675 Insulinase (Peptidase family M16) NNL22_07915 PF08367 Peptidase M16C associated NNL22_07925 PF02142 MGS-like domain NNL22_07940 PF00072 Response regulator receiver domain NNL22_07945 PF00563 EAL domain NNL22_07945 PF03707 Bacterial signalling protein N terminal repeat NNL22_07945 PF00990 Diguanylate cyclase, GGDEF domain NNL22_07970 PF00749 tRNA synthetases class I (E and Q), catalytic domain NNL22_07975 PF00753 Metallo-beta-lactamase superfamily NNL22_07980 PF01297 Zinc-uptake complex component A periplasmic NNL22_07990 PF01844 HNH endonuclease NNL22_07995 PF01207 Dihydrouridine synthase (Dus) NNL22_08000 PF00923 Transaldolase/Fructose-6-phosphate aldolase NNL22_08010 PF03009 Glycerophosphoryl diester phosphodiesterase family NNL22_08015 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NNL22_08015 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_08025 PF02424 ApbE family NNL22_08030 PF00111 2Fe-2S iron-sulfur cluster binding domain NNL22_08030 PF00175 Oxidoreductase NAD-binding domain NNL22_08030 PF00970 Oxidoreductase FAD-binding domain NNL22_08035 PF02508 Rnf-Nqr subunit, membrane protein NNL22_08040 PF02508 Rnf-Nqr subunit, membrane protein NNL22_08045 PF04205 FMN-binding domain NNL22_08050 PF03116 NQR2, RnfD, RnfE family NNL22_08055 PF11973 NQRA C-terminal domain NNL22_08055 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) NNL22_08060 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NNL22_08060 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NNL22_08065 PF00270 DEAD/DEAH box helicase NNL22_08065 PF00271 Helicase conserved C-terminal domain NNL22_08065 PF03461 TRCF domain NNL22_08065 PF17757 UvrB interaction domain NNL22_08065 PF02559 CarD-like/TRCF domain NNL22_08080 PF01048 Phosphorylase superfamily NNL22_08085 PF00924 Mechanosensitive ion channel NNL22_08090 PF00933 Glycosyl hydrolase family 3 N terminal domain NNL22_08105 PF00437 Type II/IV secretion system protein NNL22_08105 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NNL22_08110 PF00909 Ammonium Transporter Family NNL22_08120 PF00571 CBS domain NNL22_08120 PF01743 Poly A polymerase head domain NNL22_08125 PF01207 Dihydrouridine synthase (Dus) NNL22_08130 PF00677 Lumazine binding domain NNL22_08135 PF05175 Methyltransferase small domain NNL22_08140 PF09905 DNA-binding protein VF530 NNL22_08145 PF00849 RNA pseudouridylate synthase NNL22_08155 PF02492 CobW/HypB/UreG, nucleotide-binding domain NNL22_08160 PF01730 UreF NNL22_08165 PF05194 UreE urease accessory protein, C-terminal domain NNL22_08165 PF02814 UreE urease accessory protein, N-terminal domain NNL22_08170 PF00449 Urease alpha-subunit, N-terminal domain NNL22_08170 PF01979 Amidohydrolase family NNL22_08175 PF00699 Urease beta subunit NNL22_08180 PF00547 Urease, gamma subunit NNL22_08185 PF01774 UreD urease accessory protein NNL22_08190 PF00005 ABC transporter NNL22_08195 PF12399 Branched-chain amino acid ATP-binding cassette transporter NNL22_08195 PF00005 ABC transporter NNL22_08205 PF02653 Branched-chain amino acid transport system / permease component NNL22_08220 PF01625 Peptide methionine sulfoxide reductase NNL22_08225 PF03061 Thioesterase superfamily NNL22_08230 PF13847 Methyltransferase domain NNL22_08235 PF05175 Methyltransferase small domain NNL22_08235 PF08468 Methyltransferase small domain N-terminal NNL22_08250 PF00849 RNA pseudouridylate synthase NNL22_08255 PF03109 ABC1 family NNL22_08260 PF00849 RNA pseudouridylate synthase NNL22_08270 PF04958 Arginine N-succinyltransferase beta subunit NNL22_08275 PF01037 Lrp/AsnC ligand binding domain NNL22_08280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_08280 PF03466 LysR substrate binding domain NNL22_08285 PF00463 Isocitrate lyase family NNL22_08295 PF00313 'Cold-shock' DNA-binding domain NNL22_08305 PF04191 Phospholipid methyltransferase NNL22_08315 PF00202 Aminotransferase class-III NNL22_08320 PF00501 AMP-binding enzyme NNL22_08335 PF05128 Domain of unknown function (DUF697) NNL22_08340 PF04317 YcjX-like family, DUF463 NNL22_08345 PF01758 Sodium Bile acid symporter family NNL22_08350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_08350 PF03466 LysR substrate binding domain NNL22_08355 PF07681 DoxX NNL22_08360 PF17954 Quercetinase C-terminal cupin domain NNL22_08360 PF02678 Pirin NNL22_08370 PF01551 Peptidase family M23 NNL22_08370 PF08460 Bacterial SH3 domain NNL22_08380 PF13472 GDSL-like Lipase/Acylhydrolase family NNL22_08485 PF09827 CRISPR associated protein Cas2 NNL22_08490 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NNL22_08495 PF01867 CRISPR associated protein Cas1 NNL22_08510 PF00561 alpha/beta hydrolase fold NNL22_08515 PF00881 Nitroreductase family NNL22_08520 PF02810 SEC-C motif NNL22_08525 PF07690 Major Facilitator Superfamily NNL22_08535 PF01370 NAD dependent epimerase/dehydratase family NNL22_08540 PF13847 Methyltransferase domain NNL22_08545 PF01618 MotA/TolQ/ExbB proton channel family NNL22_08550 PF00691 OmpA family NNL22_08550 PF13677 Membrane MotB of proton-channel complex MotA/MotB NNL22_08555 PF03831 PhnA domain NNL22_08555 PF08274 PhnA Zinc-Ribbon NNL22_08560 PF00005 ABC transporter NNL22_08560 PF00664 ABC transporter transmembrane region NNL22_08565 PF01253 Translation initiation factor SUI1 NNL22_08580 PF01726 LexA DNA binding domain NNL22_08580 PF00717 Peptidase S24-like NNL22_08600 PF07044 Protein of unknown function (DUF1329) NNL22_08605 PF01339 CheB methylesterase NNL22_08605 PF00072 Response regulator receiver domain NNL22_08610 PF00990 Diguanylate cyclase, GGDEF domain NNL22_08610 PF05230 MASE2 domain NNL22_08615 PF04261 Dyp-type peroxidase family NNL22_08620 PF14437 MafB19-like deaminase NNL22_08625 PF00183 Hsp90 protein NNL22_08625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_08660 PF00072 Response regulator receiver domain NNL22_08660 PF00158 Sigma-54 interaction domain NNL22_08705 PF00873 AcrB/AcrD/AcrF family NNL22_08710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NNL22_08720 PF00005 ABC transporter NNL22_08725 PF13472 GDSL-like Lipase/Acylhydrolase family NNL22_08730 PF00561 alpha/beta hydrolase fold NNL22_08735 PF00582 Universal stress protein family NNL22_08750 PF02127 Aminopeptidase I zinc metalloprotease (M18) NNL22_08765 PF01170 Putative RNA methylase family UPF0020 NNL22_08765 PF10672 S-adenosylmethionine-dependent methyltransferase NNL22_08765 PF02926 THUMP domain NNL22_08770 PF04957 Ribosome modulation factor NNL22_08775 PF01180 Dihydroorotate dehydrogenase NNL22_08785 PF01545 Cation efflux family NNL22_08785 PF16916 Dimerisation domain of Zinc Transporter NNL22_08790 PF04851 Type III restriction enzyme, res subunit NNL22_08790 PF02151 UvrB/uvrC motif NNL22_08790 PF12344 Ultra-violet resistance protein B NNL22_08790 PF17757 UvrB interaction domain NNL22_08790 PF00271 Helicase conserved C-terminal domain NNL22_08795 PF00155 Aminotransferase class I and II NNL22_08805 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NNL22_08810 PF18073 Rubredoxin metal binding domain NNL22_08820 PF00216 Bacterial DNA-binding protein NNL22_08825 PF00575 S1 RNA binding domain NNL22_08830 PF02224 Cytidylate kinase NNL22_08835 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NNL22_08840 PF00155 Aminotransferase class I and II NNL22_08845 PF01842 ACT domain NNL22_08845 PF01817 Chorismate mutase type II NNL22_08845 PF00800 Prephenate dehydratase NNL22_08850 PF00266 Aminotransferase class-V NNL22_08855 PF03989 DNA gyrase C-terminal domain, beta-propeller NNL22_08855 PF00521 DNA gyrase/topoisomerase IV, subunit A NNL22_08860 PF17151 Periplasmic sensor domain NNL22_08860 PF00990 Diguanylate cyclase, GGDEF domain NNL22_08865 PF01842 ACT domain NNL22_08865 PF00551 Formyl transferase NNL22_08870 PF01329 Pterin 4 alpha carbinolamine dehydratase NNL22_08875 PF05681 Fumarate hydratase (Fumerase) NNL22_08875 PF05683 Fumarase C-terminus NNL22_08880 PF12262 Bacterial virulence factor lipase N-terminal NNL22_08900 PF00764 Arginosuccinate synthase NNL22_08905 PF00691 OmpA family NNL22_08905 PF13505 Outer membrane protein beta-barrel domain NNL22_08910 PF01979 Amidohydrolase family NNL22_08915 PF00929 Exonuclease NNL22_08920 PF10417 C-terminal domain of 1-Cys peroxiredoxin NNL22_08920 PF00578 AhpC/TSA family NNL22_08925 PF00106 short chain dehydrogenase NNL22_08935 PF05193 Peptidase M16 inactive domain NNL22_08935 PF16187 Middle or third domain of peptidase_M16 NNL22_08935 PF00675 Insulinase (Peptidase family M16) NNL22_08940 PF08411 Exonuclease C-terminal NNL22_08940 PF00929 Exonuclease NNL22_08975 PF02222 ATP-grasp domain NNL22_08985 PF00132 Bacterial transferase hexapeptide (six repeats) NNL22_09000 PF02769 AIR synthase related protein, C-terminal domain NNL22_09000 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NNL22_09000 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NNL22_09005 PF01464 Transglycosylase SLT domain NNL22_09005 PF00497 Bacterial extracellular solute-binding proteins, family 3 NNL22_09010 PF02631 RecX family NNL22_09025 PF02803 Thiolase, C-terminal domain NNL22_09025 PF00108 Thiolase, N-terminal domain NNL22_09030 PF00378 Enoyl-CoA hydratase/isomerase NNL22_09030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NNL22_09030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NNL22_09035 PF11818 C-terminal domain of tail specific protease (DUF3340) NNL22_09035 PF00595 PDZ domain NNL22_09035 PF17804 Tail specific protease N-terminal domain NNL22_09035 PF03572 Peptidase family S41 NNL22_09050 PF01008 Initiation factor 2 subunit family NNL22_09055 PF01979 Amidohydrolase family NNL22_09065 PF13419 Haloacid dehalogenase-like hydrolase NNL22_09070 PF00106 short chain dehydrogenase NNL22_09080 PF03918 Cytochrome C biogenesis protein NNL22_09085 PF08534 Redoxin NNL22_09090 PF01578 Cytochrome C assembly protein NNL22_09090 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NNL22_09095 PF03100 CcmE NNL22_09100 PF04995 Heme exporter protein D (CcmD) NNL22_09105 PF01578 Cytochrome C assembly protein NNL22_09110 PF03379 CcmB protein NNL22_09115 PF00005 ABC transporter NNL22_09125 PF01312 FlhB HrpN YscU SpaS Family NNL22_09130 PF07044 Protein of unknown function (DUF1329) NNL22_09135 PF05230 MASE2 domain NNL22_09135 PF00990 Diguanylate cyclase, GGDEF domain NNL22_09145 PF01584 CheW-like domain NNL22_09160 PF13614 AAA domain NNL22_09165 PF00691 OmpA family NNL22_09165 PF13677 Membrane MotB of proton-channel complex MotA/MotB NNL22_09170 PF01618 MotA/TolQ/ExbB proton channel family NNL22_09175 PF00072 Response regulator receiver domain NNL22_09175 PF01339 CheB methylesterase NNL22_09180 PF02895 Signal transducing histidine kinase, homodimeric domain NNL22_09180 PF00072 Response regulator receiver domain NNL22_09180 PF01584 CheW-like domain NNL22_09180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_09180 PF01627 Hpt domain NNL22_09185 PF04344 Chemotaxis phosphatase, CheZ NNL22_09190 PF00072 Response regulator receiver domain NNL22_09195 PF04545 Sigma-70, region 4 NNL22_09195 PF04542 Sigma-70 region 2 NNL22_09195 PF04539 Sigma-70 region 3 NNL22_09200 PF10609 NUBPL iron-transfer P-loop NTPase NNL22_09205 PF00448 SRP54-type protein, GTPase domain NNL22_09210 PF00771 FHIPEP family NNL22_09215 PF01312 FlhB HrpN YscU SpaS Family NNL22_09220 PF01311 Bacterial export proteins, family 1 NNL22_09225 PF01313 Bacterial export proteins, family 3 NNL22_09230 PF00813 FliP family NNL22_09235 PF04347 Flagellar biosynthesis protein, FliO NNL22_09240 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NNL22_09245 PF02154 Flagellar motor switch protein FliM NNL22_09245 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NNL22_09265 PF00072 Response regulator receiver domain NNL22_09265 PF00486 Transcriptional regulatory protein, C terminal NNL22_09270 PF13466 STAS domain NNL22_09275 PF01339 CheB methylesterase NNL22_09275 PF00072 Response regulator receiver domain NNL22_09280 PF03975 CheD chemotactic sensory transduction NNL22_09285 PF01739 CheR methyltransferase, SAM binding domain NNL22_09285 PF03705 CheR methyltransferase, all-alpha domain NNL22_09290 PF01584 CheW-like domain NNL22_09295 PF01627 Hpt domain NNL22_09295 PF02895 Signal transducing histidine kinase, homodimeric domain NNL22_09295 PF01584 CheW-like domain NNL22_09295 PF09078 CheY binding NNL22_09295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_09300 PF00072 Response regulator receiver domain NNL22_09310 PF00672 HAMP domain NNL22_09310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NNL22_09310 PF17200 Single Cache domain 2 NNL22_09320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NNL22_09320 PF18269 T3SS EscN ATPase C-terminal domain NNL22_09330 PF01706 FliG C-terminal domain NNL22_09330 PF14841 FliG middle domain NNL22_09330 PF14842 FliG N-terminal domain NNL22_09335 PF08345 Flagellar M-ring protein C-terminal NNL22_09335 PF01514 Secretory protein of YscJ/FliF family NNL22_09340 PF02049 Flagellar hook-basal body complex protein FliE NNL22_09345 PF02954 Bacterial regulatory protein, Fis family NNL22_09345 PF00072 Response regulator receiver domain NNL22_09345 PF00158 Sigma-54 interaction domain NNL22_09350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_09350 PF00512 His Kinase A (phospho-acceptor) domain NNL22_09350 PF13188 PAS domain NNL22_09355 PF06490 Flagellar regulatory protein FleQ NNL22_09355 PF02954 Bacterial regulatory protein, Fis family NNL22_09355 PF00158 Sigma-54 interaction domain NNL22_09370 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit NNL22_09375 PF00364 Biotin-requiring enzyme NNL22_09375 PF00682 HMGL-like NNL22_09375 PF02436 Conserved carboxylase domain NNL22_09380 PF04277 Oxaloacetate decarboxylase, gamma chain NNL22_09400 PF02599 Global regulator protein family NNL22_09405 PF00696 Amino acid kinase family NNL22_09405 PF01842 ACT domain NNL22_09405 PF13840 ACT domain NNL22_09410 PF02272 DHHA1 domain NNL22_09410 PF01411 tRNA synthetases class II (A) NNL22_09410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NNL22_09430 PF03739 Lipopolysaccharide export system permease LptF/LptG NNL22_09435 PF03739 Lipopolysaccharide export system permease LptF/LptG NNL22_09440 PF02789 Cytosol aminopeptidase family, N-terminal domain NNL22_09440 PF00883 Cytosol aminopeptidase family, catalytic domain NNL22_09455 PF08264 Anticodon-binding domain of tRNA NNL22_09455 PF00133 tRNA synthetases class I (I, L, M and V) NNL22_09455 PF10458 Valyl tRNA synthetase tRNA binding arm NNL22_09460 PF02558 Ketopantoate reductase PanE/ApbA NNL22_09460 PF08546 Ketopantoate reductase PanE/ApbA C terminal NNL22_09465 PF00672 HAMP domain NNL22_09465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NNL22_09465 PF12729 Four helix bundle sensory module for signal transduction NNL22_09470 PF00480 ROK family NNL22_09475 PF07348 Syd protein (SUKH-2) NNL22_09480 PF17113 Regulatory signalling modulator protein AmpE NNL22_09480 PF03186 CobD/Cbib protein NNL22_09485 PF01510 N-acetylmuramoyl-L-alanine amidase NNL22_09500 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NNL22_09500 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NNL22_09505 PF03707 Bacterial signalling protein N terminal repeat NNL22_09505 PF00990 Diguanylate cyclase, GGDEF domain NNL22_09505 PF00563 EAL domain NNL22_09520 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family NNL22_09525 PF00308 Bacterial dnaA protein NNL22_09530 PF01066 CDP-alcohol phosphatidyltransferase NNL22_09540 PF00586 AIR synthase related protein, N-terminal domain NNL22_09540 PF02769 AIR synthase related protein, C-terminal domain NNL22_09545 PF00551 Formyl transferase NNL22_09555 PF00270 DEAD/DEAH box helicase NNL22_09555 PF04408 Helicase associated domain (HA2) NNL22_09555 PF00271 Helicase conserved C-terminal domain NNL22_09555 PF08482 ATP-dependent helicase C-terminal NNL22_09560 PF00924 Mechanosensitive ion channel NNL22_09560 PF05552 Conserved TM helix NNL22_09580 PF05698 Bacterial trigger factor protein (TF) C-terminus NNL22_09610 PF01553 Acyltransferase NNL22_09640 PF05525 Branched-chain amino acid transport protein NNL22_09645 PF00990 Diguanylate cyclase, GGDEF domain NNL22_09645 PF17151 Periplasmic sensor domain NNL22_09660 PF00120 Glutamine synthetase, catalytic domain NNL22_09660 PF18318 Glutamine synthetase C-terminal domain NNL22_09660 PF12437 Glutamine synthetase type III N terminal NNL22_09670 PF00884 Sulfatase NNL22_09690 PF01272 Transcription elongation factor, GreA/GreB, C-term NNL22_09690 PF14760 Rnk N-terminus NNL22_09700 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal NNL22_09700 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal NNL22_09715 PF00563 EAL domain NNL22_09715 PF00990 Diguanylate cyclase, GGDEF domain NNL22_09715 PF03707 Bacterial signalling protein N terminal repeat NNL22_09720 PF04298 Putative neutral zinc metallopeptidase NNL22_09725 PF12146 Serine aminopeptidase, S33 NNL22_09730 PF00990 Diguanylate cyclase, GGDEF domain NNL22_09735 PF07715 TonB-dependent Receptor Plug Domain NNL22_09735 PF00593 TonB dependent receptor NNL22_09750 PF00563 EAL domain NNL22_09750 PF00990 Diguanylate cyclase, GGDEF domain NNL22_09750 PF03707 Bacterial signalling protein N terminal repeat NNL22_09755 PF00106 short chain dehydrogenase NNL22_09765 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NNL22_09765 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_09770 PF00108 Thiolase, N-terminal domain NNL22_09770 PF02803 Thiolase, C-terminal domain NNL22_09790 PF00583 Acetyltransferase (GNAT) family NNL22_09790 PF00795 Carbon-nitrogen hydrolase NNL22_09795 PF04303 PrpF protein NNL22_09800 PF00330 Aconitase family (aconitate hydratase) NNL22_09800 PF00694 Aconitase C-terminal domain NNL22_09805 PF00285 Citrate synthase, C-terminal domain NNL22_09815 PF00392 Bacterial regulatory proteins, gntR family NNL22_09815 PF07729 FCD domain NNL22_09820 PF12833 Helix-turn-helix domain NNL22_09820 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NNL22_09840 PF07670 Nucleoside recognition NNL22_09845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_09845 PF00512 His Kinase A (phospho-acceptor) domain NNL22_09845 PF00989 PAS fold NNL22_09850 PF00072 Response regulator receiver domain NNL22_09850 PF00196 Bacterial regulatory proteins, luxR family NNL22_09855 PF01551 Peptidase family M23 NNL22_09875 PF05362 Lon protease (S16) C-terminal proteolytic domain NNL22_09875 PF13654 AAA domain NNL22_09890 PF04247 Invasion gene expression up-regulator, SirB NNL22_09895 PF01136 Peptidase family U32 NNL22_09900 PF01136 Peptidase family U32 NNL22_09905 PF04055 Radical SAM superfamily NNL22_09905 PF16199 Radical_SAM C-terminal domain NNL22_09910 PF02036 SCP-2 sterol transfer family NNL22_09920 PF12833 Helix-turn-helix domain NNL22_09920 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NNL22_09925 PF01609 Transposase DDE domain NNL22_09930 PF00550 Phosphopantetheine attachment site NNL22_09935 PF00289 Biotin carboxylase, N-terminal domain NNL22_09935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NNL22_09935 PF02785 Biotin carboxylase C-terminal domain NNL22_09940 PF07055 Enoyl reductase FAD binding domain NNL22_09940 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NNL22_09940 PF12241 Trans-2-enoyl-CoA reductase catalytic region NNL22_09945 PF02801 Beta-ketoacyl synthase, C-terminal domain NNL22_09945 PF00109 Beta-ketoacyl synthase, N-terminal domain NNL22_09950 PF07977 FabA-like domain NNL22_09965 PF00154 recA bacterial DNA recombination protein NNL22_09970 PF01624 MutS domain I NNL22_09970 PF05188 MutS domain II NNL22_09970 PF05192 MutS domain III NNL22_09970 PF05190 MutS family domain IV NNL22_09970 PF00488 MutS domain V NNL22_09975 PF11953 Domain of unknown function (DUF3470) NNL22_09975 PF00037 4Fe-4S binding domain NNL22_09980 PF01351 Ribonuclease HII NNL22_09985 PF02684 Lipid-A-disaccharide synthetase NNL22_09990 PF00132 Bacterial transferase hexapeptide (six repeats) NNL22_09990 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NNL22_09995 PF07977 FabA-like domain NNL22_10000 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NNL22_10000 PF00132 Bacterial transferase hexapeptide (six repeats) NNL22_10010 PF01103 Surface antigen NNL22_10010 PF07244 Surface antigen variable number repeat NNL22_10015 PF13180 PDZ domain NNL22_10015 PF17820 PDZ domain NNL22_10015 PF02163 Peptidase family M50 NNL22_10020 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NNL22_10020 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NNL22_10020 PF13288 DXP reductoisomerase C-terminal domain NNL22_10030 PF01255 Putative undecaprenyl diphosphate synthase NNL22_10035 PF01765 Ribosome recycling factor NNL22_10040 PF00696 Amino acid kinase family NNL22_10045 PF00889 Elongation factor TS NNL22_10050 PF00318 Ribosomal protein S2 NNL22_10055 PF00557 Metallopeptidase family M24 NNL22_10060 PF01909 Nucleotidyltransferase domain NNL22_10060 PF08335 GlnD PII-uridylyltransferase NNL22_10060 PF01966 HD domain NNL22_10065 PF00155 Aminotransferase class I and II NNL22_10070 PF03960 ArsC family NNL22_10075 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle NNL22_10075 PF14602 Hexapeptide repeat of succinyl-transferase NNL22_10080 PF01546 Peptidase family M20/M25/M40 NNL22_10080 PF07687 Peptidase dimerisation domain NNL22_10085 PF13847 Methyltransferase domain NNL22_10100 PF00313 'Cold-shock' DNA-binding domain NNL22_10105 PF04102 SlyX NNL22_10110 PF10431 C-terminal, D2-small domain, of ClpB protein NNL22_10110 PF17871 AAA lid domain NNL22_10110 PF00004 ATPase family associated with various cellular activities (AAA) NNL22_10110 PF07724 AAA domain (Cdc48 subfamily) NNL22_10120 PF05947 Type VI secretion system, TssF NNL22_10130 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NNL22_10150 PF01050 Mannose-6-phosphate isomerase NNL22_10150 PF00483 Nucleotidyl transferase NNL22_10155 PF02719 Polysaccharide biosynthesis protein NNL22_10160 PF02397 Bacterial sugar transferase NNL22_10165 PF01370 NAD dependent epimerase/dehydratase family NNL22_10175 PF02350 UDP-N-acetylglucosamine 2-epimerase NNL22_10180 PF01370 NAD dependent epimerase/dehydratase family NNL22_10185 PF02719 Polysaccharide biosynthesis protein NNL22_10185 PF08485 Polysaccharide biosynthesis protein C-terminal NNL22_10190 PF00977 Histidine biosynthesis protein NNL22_10195 PF00117 Glutamine amidotransferase class-I NNL22_10220 PF13472 GDSL-like Lipase/Acylhydrolase family NNL22_10220 PF02348 Cytidylyltransferase NNL22_10225 PF00483 Nucleotidyl transferase NNL22_10235 PF08666 SAF domain NNL22_10235 PF03102 NeuB family NNL22_10245 PF02911 Formyl transferase, C-terminal domain NNL22_10245 PF01370 NAD dependent epimerase/dehydratase family NNL22_10245 PF00551 Formyl transferase NNL22_10250 PF02350 UDP-N-acetylglucosamine 2-epimerase NNL22_10255 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NNL22_10260 PF02719 Polysaccharide biosynthesis protein NNL22_10270 PF00483 Nucleotidyl transferase NNL22_10275 PF02706 Chain length determinant protein NNL22_10285 PF04321 RmlD substrate binding domain NNL22_10290 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NNL22_10295 PF00483 Nucleotidyl transferase NNL22_10300 PF16363 GDP-mannose 4,6 dehydratase NNL22_10305 PF01370 NAD dependent epimerase/dehydratase family NNL22_10310 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NNL22_10310 PF10996 Beta-Casp domain NNL22_10310 PF00753 Metallo-beta-lactamase superfamily NNL22_10320 PF10996 Beta-Casp domain NNL22_10320 PF00753 Metallo-beta-lactamase superfamily NNL22_10320 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NNL22_10325 PF02885 Glycosyl transferase family, helical bundle domain NNL22_10325 PF00591 Glycosyl transferase family, a/b domain NNL22_10325 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NNL22_10355 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NNL22_10355 PF00437 Type II/IV secretion system protein NNL22_10360 PF00482 Type II secretion system (T2SS), protein F NNL22_10365 PF06750 Bacterial Peptidase A24 N-terminal domain NNL22_10365 PF01478 Type IV leader peptidase family NNL22_10370 PF01121 Dephospho-CoA kinase NNL22_10375 PF03884 DNA gyrase inhibitor YacG NNL22_10380 PF01230 HIT domain NNL22_10390 PF04172 LrgB-like family NNL22_10395 PF18389 TrmO C-terminal domain NNL22_10395 PF01980 tRNA-methyltransferase O NNL22_10405 PF03692 Putative zinc- or iron-chelating domain NNL22_10410 PF00072 Response regulator receiver domain NNL22_10410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NNL22_10410 PF01627 Hpt domain NNL22_10410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_10410 PF00672 HAMP domain NNL22_10410 PF00512 His Kinase A (phospho-acceptor) domain NNL22_10420 PF01022 Bacterial regulatory protein, arsR family NNL22_10455 PF00196 Bacterial regulatory proteins, luxR family NNL22_10455 PF00072 Response regulator receiver domain NNL22_10460 PF07044 Protein of unknown function (DUF1329) NNL22_10470 PF02803 Thiolase, C-terminal domain NNL22_10470 PF00108 Thiolase, N-terminal domain NNL22_10475 PF03969 AFG1-like ATPase NNL22_10485 PF01784 NIF3 (NGG1p interacting factor 3) NNL22_10490 PF00815 Histidinol dehydrogenase NNL22_10495 PF01634 ATP phosphoribosyltransferase NNL22_10500 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NNL22_10505 PF01722 BolA-like protein NNL22_10525 PF02405 Permease MlaE NNL22_10530 PF00005 ABC transporter NNL22_10535 PF01699 Sodium/calcium exchanger protein NNL22_10540 PF01380 SIS domain NNL22_10540 PF00571 CBS domain NNL22_10555 PF00005 ABC transporter NNL22_10555 PF12399 Branched-chain amino acid ATP-binding cassette transporter NNL22_10560 PF00309 Sigma-54 factor, Activator interacting domain (AID) NNL22_10560 PF04963 Sigma-54 factor, core binding domain NNL22_10560 PF04552 Sigma-54, DNA binding domain NNL22_10565 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NNL22_10570 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NNL22_10575 PF03668 P-loop ATPase protein family NNL22_10580 PF00381 PTS HPr component phosphorylation site NNL22_10585 PF01769 Divalent cation transporter NNL22_10585 PF03448 MgtE intracellular N domain NNL22_10585 PF00571 CBS domain NNL22_10590 PF04751 Protein of unknown function (DUF615) NNL22_10595 PF00795 Carbon-nitrogen hydrolase NNL22_10605 PF10150 Ribonuclease E/G family NNL22_10605 PF00575 S1 RNA binding domain NNL22_10610 PF02545 Maf-like protein NNL22_10615 PF04093 rod shape-determining protein MreD NNL22_10620 PF04085 rod shape-determining protein MreC NNL22_10630 PF02686 Glu-tRNAGln amidotransferase C subunit NNL22_10635 PF01425 Amidase NNL22_10640 PF02637 GatB domain NNL22_10640 PF02934 GatB/GatE catalytic domain NNL22_10645 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NNL22_10650 PF02565 Recombination protein O C terminal NNL22_10650 PF11967 Recombination protein O N terminal NNL22_10655 PF07650 KH domain NNL22_10655 PF01926 50S ribosome-binding GTPase NNL22_10660 PF00035 Double-stranded RNA binding motif NNL22_10660 PF14622 Ribonuclease-III-like NNL22_10670 PF10502 Signal peptidase, peptidase S26 NNL22_10675 PF00679 Elongation factor G C-terminus NNL22_10675 PF00009 Elongation factor Tu GTP binding domain NNL22_10675 PF03144 Elongation factor Tu domain 2 NNL22_10675 PF06421 GTP-binding protein LepA C-terminus NNL22_10680 PF00990 Diguanylate cyclase, GGDEF domain NNL22_10680 PF03707 Bacterial signalling protein N terminal repeat NNL22_10680 PF00563 EAL domain NNL22_10685 PF17820 PDZ domain NNL22_10685 PF13180 PDZ domain NNL22_10695 PF17188 MucB/RseB C-terminal domain NNL22_10695 PF03888 MucB/RseB N-terminal domain NNL22_10700 PF03872 Anti sigma-E protein RseA, N-terminal domain NNL22_10700 PF03873 Anti sigma-E protein RseA, C-terminal domain NNL22_10705 PF04542 Sigma-70 region 2 NNL22_10705 PF08281 Sigma-70, region 4 NNL22_10710 PF00890 FAD binding domain NNL22_10710 PF02910 Fumarate reductase flavoprotein C-term NNL22_10715 PF03937 Flavinator of succinate dehydrogenase NNL22_10735 PF03167 Uracil DNA glycosylase superfamily NNL22_10740 PF01336 OB-fold nucleic acid binding domain NNL22_10740 PF00152 tRNA synthetases class II (D, K and N) NNL22_10755 PF17768 RecJ OB domain NNL22_10755 PF02272 DHHA1 domain NNL22_10755 PF01368 DHH family NNL22_10760 PF14821 Threonine synthase N terminus NNL22_10760 PF00291 Pyridoxal-phosphate dependent enzyme NNL22_10765 PF00742 Homoserine dehydrogenase NNL22_10765 PF03447 Homoserine dehydrogenase, NAD binding domain NNL22_10765 PF01842 ACT domain NNL22_10770 PF10411 Disulfide bond isomerase protein N-terminus NNL22_10770 PF13098 Thioredoxin-like domain NNL22_10775 PF01245 Ribosomal protein L19 NNL22_10780 PF01746 tRNA (Guanine-1)-methyltransferase NNL22_10785 PF05239 PRC-barrel domain NNL22_10785 PF01782 RimM N-terminal domain NNL22_10790 PF00886 Ribosomal protein S16 NNL22_10795 PF00448 SRP54-type protein, GTPase domain NNL22_10795 PF02881 SRP54-type protein, helical bundle domain NNL22_10795 PF02978 Signal peptide binding domain NNL22_10800 PF01578 Cytochrome C assembly protein NNL22_10805 PF03471 Transporter associated domain NNL22_10805 PF01595 Cyclin M transmembrane N-terminal domain NNL22_10805 PF00571 CBS domain NNL22_10820 PF00462 Glutaredoxin NNL22_10825 PF02538 Hydantoinase B/oxoprolinase NNL22_10830 PF00202 Aminotransferase class-III NNL22_10835 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NNL22_10835 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NNL22_10840 PF08402 TOBE domain NNL22_10840 PF00005 ABC transporter NNL22_10845 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NNL22_10845 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NNL22_10850 PF00455 DeoR C terminal sensor domain NNL22_10850 PF08220 DeoR-like helix-turn-helix domain NNL22_10855 PF01266 FAD dependent oxidoreductase NNL22_10855 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NNL22_10860 PF00512 His Kinase A (phospho-acceptor) domain NNL22_10860 PF00672 HAMP domain NNL22_10860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_10865 PF00072 Response regulator receiver domain NNL22_10865 PF00486 Transcriptional regulatory protein, C terminal NNL22_10870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NNL22_10890 PF00990 Diguanylate cyclase, GGDEF domain NNL22_10895 PF04264 YceI-like domain NNL22_10900 PF01292 Prokaryotic cytochrome b561 NNL22_10905 PF05231 MASE1 NNL22_10905 PF00563 EAL domain NNL22_10915 PF17283 SprT-like zinc ribbon domain NNL22_10915 PF10263 SprT-like family NNL22_10920 PF00155 Aminotransferase class I and II NNL22_10925 PF00274 Fructose-bisphosphate aldolase class-I NNL22_10930 PF00293 NUDIX domain NNL22_10930 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NNL22_10930 PF09297 NADH pyrophosphatase zinc ribbon domain NNL22_10950 PF00106 short chain dehydrogenase NNL22_10955 PF00672 HAMP domain NNL22_10955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_10955 PF00512 His Kinase A (phospho-acceptor) domain NNL22_10955 PF01627 Hpt domain NNL22_10955 PF00072 Response regulator receiver domain NNL22_10955 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NNL22_10965 PF07859 alpha/beta hydrolase fold NNL22_10970 PF06167 Glucose-regulated metallo-peptidase M90 NNL22_10980 PF00136 DNA polymerase family B NNL22_10980 PF03104 DNA polymerase family B, exonuclease domain NNL22_10990 PF00563 EAL domain NNL22_10990 PF03707 Bacterial signalling protein N terminal repeat NNL22_10990 PF00990 Diguanylate cyclase, GGDEF domain NNL22_10995 PF09905 DNA-binding protein VF530 NNL22_11010 PF12848 ABC transporter NNL22_11010 PF00005 ABC transporter NNL22_11015 PF01272 Transcription elongation factor, GreA/GreB, C-term NNL22_11015 PF03449 Transcription elongation factor, N-terminal NNL22_11030 PF02492 CobW/HypB/UreG, nucleotide-binding domain NNL22_11030 PF07683 Cobalamin synthesis protein cobW C-terminal domain NNL22_11050 PF17200 Single Cache domain 2 NNL22_11050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NNL22_11050 PF00672 HAMP domain NNL22_11055 PF02743 Cache domain NNL22_11055 PF00672 HAMP domain NNL22_11055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NNL22_11075 PF00793 DAHP synthetase I family NNL22_11100 PF03793 PASTA domain NNL22_11100 PF00069 Protein kinase domain NNL22_11115 PF00873 AcrB/AcrD/AcrF family NNL22_11125 PF01212 Beta-eliminating lyase NNL22_11135 PF01810 LysE type translocator NNL22_11150 PF00873 AcrB/AcrD/AcrF family NNL22_11160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NNL22_11175 PF01810 LysE type translocator NNL22_11200 PF00155 Aminotransferase class I and II NNL22_11200 PF00392 Bacterial regulatory proteins, gntR family NNL22_11205 PF00849 RNA pseudouridylate synthase NNL22_11205 PF01479 S4 domain NNL22_11210 PF00270 DEAD/DEAH box helicase NNL22_11210 PF00271 Helicase conserved C-terminal domain NNL22_11215 PF05971 RNA methyltransferase NNL22_11220 PF00111 2Fe-2S iron-sulfur cluster binding domain NNL22_11220 PF00970 Oxidoreductase FAD-binding domain NNL22_11220 PF00175 Oxidoreductase NAD-binding domain NNL22_11225 PF00487 Fatty acid desaturase NNL22_11230 PF01553 Acyltransferase NNL22_11235 PF00271 Helicase conserved C-terminal domain NNL22_11235 PF04851 Type III restriction enzyme, res subunit NNL22_11255 PF00005 ABC transporter NNL22_11255 PF00571 CBS domain NNL22_11260 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_11265 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NNL22_11270 PF05199 GMC oxidoreductase NNL22_11270 PF00732 GMC oxidoreductase NNL22_11275 PF00171 Aldehyde dehydrogenase family NNL22_11280 PF00440 Bacterial regulatory proteins, tetR family NNL22_11280 PF13977 BetI-type transcriptional repressor, C-terminal NNL22_11285 PF00202 Aminotransferase class-III NNL22_11290 PF12320 Type 5 capsule protein repressor C-terminal domain NNL22_11290 PF00149 Calcineurin-like phosphoesterase NNL22_11295 PF13476 AAA domain NNL22_11310 PF00270 DEAD/DEAH box helicase NNL22_11310 PF00271 Helicase conserved C-terminal domain NNL22_11315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NNL22_11315 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NNL22_11330 PF00881 Nitroreductase family NNL22_11335 PF05958 tRNA (Uracil-5-)-methyltransferase NNL22_11365 PF00005 ABC transporter NNL22_11365 PF00664 ABC transporter transmembrane region NNL22_11380 PF00561 alpha/beta hydrolase fold NNL22_11385 PF03280 Proteobacterial lipase chaperone protein NNL22_11390 PF00795 Carbon-nitrogen hydrolase NNL22_11405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_11405 PF00986 DNA gyrase B subunit, carboxyl terminus NNL22_11405 PF00204 DNA gyrase B NNL22_11405 PF01751 Toprim domain NNL22_11410 PF01483 Proprotein convertase P-domain NNL22_11410 PF00082 Subtilase family NNL22_11415 PF01425 Amidase NNL22_11420 PF17932 Tetracyclin repressor-like, C-terminal domain NNL22_11420 PF00440 Bacterial regulatory proteins, tetR family NNL22_11435 PF01039 Carboxyl transferase domain NNL22_11440 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_11440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_11440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_11445 PF00378 Enoyl-CoA hydratase/isomerase NNL22_11445 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NNL22_11445 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NNL22_11450 PF02785 Biotin carboxylase C-terminal domain NNL22_11450 PF00289 Biotin carboxylase, N-terminal domain NNL22_11450 PF00364 Biotin-requiring enzyme NNL22_11450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NNL22_11455 PF00106 short chain dehydrogenase NNL22_11480 PF03466 LysR substrate binding domain NNL22_11480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_11490 PF08443 RimK-like ATP-grasp domain NNL22_11490 PF18030 RimK PreATP-grasp domain NNL22_11500 PF08443 RimK-like ATP-grasp domain NNL22_11500 PF18030 RimK PreATP-grasp domain NNL22_11505 PF03734 L,D-transpeptidase catalytic domain NNL22_11505 PF01476 LysM domain NNL22_11505 PF17969 L,D-transpeptidase C-terminal domain NNL22_11515 PF00860 Permease family NNL22_11520 PF00156 Phosphoribosyl transferase domain NNL22_11530 PF01544 CorA-like Mg2+ transporter protein NNL22_11535 PF00691 OmpA family NNL22_11535 PF04972 BON domain NNL22_11545 PF01769 Divalent cation transporter NNL22_11545 PF03448 MgtE intracellular N domain NNL22_11545 PF00571 CBS domain NNL22_11550 PF00571 CBS domain NNL22_11550 PF03448 MgtE intracellular N domain NNL22_11550 PF01769 Divalent cation transporter NNL22_11555 PF05552 Conserved TM helix NNL22_11555 PF00924 Mechanosensitive ion channel NNL22_11565 PF02308 MgtC family NNL22_11570 PF00849 RNA pseudouridylate synthase NNL22_11570 PF01479 S4 domain NNL22_11575 PF03109 ABC1 family NNL22_11580 PF01557 Fumarylacetoacetate (FAA) hydrolase family NNL22_11585 PF01565 FAD binding domain NNL22_11585 PF02913 FAD linked oxidases, C-terminal domain NNL22_11590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NNL22_11590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NNL22_11595 PF00691 OmpA family NNL22_11595 PF13488 Glycine zipper NNL22_11605 PF07556 Protein of unknown function (DUF1538) NNL22_11610 PF07556 Protein of unknown function (DUF1538) NNL22_11625 PF00271 Helicase conserved C-terminal domain NNL22_11625 PF00270 DEAD/DEAH box helicase NNL22_11630 PF08443 RimK-like ATP-grasp domain NNL22_11630 PF18030 RimK PreATP-grasp domain NNL22_11630 PF02080 TrkA-C domain NNL22_11640 PF08443 RimK-like ATP-grasp domain NNL22_11640 PF18030 RimK PreATP-grasp domain NNL22_11645 PF00924 Mechanosensitive ion channel NNL22_11645 PF12795 Mechanosensitive ion channel porin domain NNL22_11645 PF12794 Mechanosensitive ion channel inner membrane domain 1 NNL22_11655 PF13091 PLD-like domain NNL22_11665 PF01116 Fructose-bisphosphate aldolase class-II NNL22_11670 PF00162 Phosphoglycerate kinase NNL22_11675 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NNL22_11675 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NNL22_11680 PF00456 Transketolase, thiamine diphosphate binding domain NNL22_11680 PF02779 Transketolase, pyrimidine binding domain NNL22_11680 PF02780 Transketolase, C-terminal domain NNL22_11740 PF04717 Type VI secretion system, phage-baseplate injector NNL22_11745 PF01022 Bacterial regulatory protein, arsR family NNL22_11750 PF02772 S-adenosylmethionine synthetase, central domain NNL22_11750 PF00438 S-adenosylmethionine synthetase, N-terminal domain NNL22_11750 PF02773 S-adenosylmethionine synthetase, C-terminal domain NNL22_11755 PF05221 S-adenosyl-L-homocysteine hydrolase NNL22_11755 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NNL22_11760 PF02219 Methylenetetrahydrofolate reductase NNL22_11765 PF04452 RNA methyltransferase NNL22_11770 PF00529 HlyD membrane-fusion protein of T1SS NNL22_11770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NNL22_11775 PF00873 AcrB/AcrD/AcrF family NNL22_11780 PF04286 Protein of unknown function (DUF445) NNL22_11790 PF03631 Virulence factor BrkB NNL22_11795 PF01627 Hpt domain NNL22_11795 PF00072 Response regulator receiver domain NNL22_11795 PF00512 His Kinase A (phospho-acceptor) domain NNL22_11795 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NNL22_11795 PF00672 HAMP domain NNL22_11795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_11800 PF01894 Uncharacterised protein family UPF0047 NNL22_11805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NNL22_11805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NNL22_11810 PF06798 PrkA serine protein kinase C-terminal domain NNL22_11810 PF08298 PrkA AAA domain NNL22_11815 PF04285 Protein of unknown function (DUF444) NNL22_11820 PF04293 SpoVR like protein NNL22_11825 PF11944 Protein of unknown function (DUF3461) NNL22_11840 PF01458 Uncharacterized protein family (UPF0051) NNL22_11845 PF00005 ABC transporter NNL22_11850 PF01458 Uncharacterized protein family (UPF0051) NNL22_11855 PF00266 Aminotransferase class-V NNL22_11860 PF01521 Iron-sulphur cluster biosynthesis NNL22_11865 PF01883 Iron-sulfur cluster assembly protein NNL22_11870 PF02657 Fe-S metabolism associated domain NNL22_11895 PF00365 Phosphofructokinase NNL22_11910 PF00486 Transcriptional regulatory protein, C terminal NNL22_11910 PF00072 Response regulator receiver domain NNL22_11915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_11925 PF00462 Glutaredoxin NNL22_11930 PF00440 Bacterial regulatory proteins, tetR family NNL22_11935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NNL22_11940 PF00873 AcrB/AcrD/AcrF family NNL22_11950 PF00691 OmpA family NNL22_11950 PF05736 OprF membrane domain NNL22_11965 PF00484 Carbonic anhydrase NNL22_11970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_11970 PF03466 LysR substrate binding domain NNL22_11975 PF03976 Polyphosphate kinase 2 (PPK2) NNL22_11985 PF05724 Thiopurine S-methyltransferase (TPMT) NNL22_11990 PF00890 FAD binding domain NNL22_11995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NNL22_11995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NNL22_12015 PF07308 Protein of unknown function (DUF1456) NNL22_12020 PF10928 Protein of unknown function (DUF2810) NNL22_12035 PF00005 ABC transporter NNL22_12060 PF03971 Monomeric isocitrate dehydrogenase NNL22_12065 PF03466 LysR substrate binding domain NNL22_12065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_12070 PF02525 Flavodoxin-like fold NNL22_12075 PF06062 Uncharacterised protein family (UPF0231) NNL22_12090 PF00069 Protein kinase domain NNL22_12090 PF03793 PASTA domain NNL22_12095 PF07690 Major Facilitator Superfamily NNL22_12100 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_12100 PF18267 Rubredoxin NAD+ reductase C-terminal domain NNL22_12100 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NNL22_12100 PF04324 BFD-like [2Fe-2S] binding domain NNL22_12100 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NNL22_12110 PF01568 Molydopterin dinucleotide binding domain NNL22_12110 PF00384 Molybdopterin oxidoreductase NNL22_12110 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NNL22_12110 PF04324 BFD-like [2Fe-2S] binding domain NNL22_12115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NNL22_12120 PF16347 Domain of unknown function (DUF4976) NNL22_12120 PF00884 Sulfatase NNL22_12125 PF00905 Penicillin binding protein transpeptidase domain NNL22_12130 PF00563 EAL domain NNL22_12130 PF00990 Diguanylate cyclase, GGDEF domain NNL22_12130 PF03707 Bacterial signalling protein N terminal repeat NNL22_12145 PF01740 STAS domain NNL22_12145 PF00916 Sulfate permease family NNL22_12150 PF00849 RNA pseudouridylate synthase NNL22_12150 PF01479 S4 domain NNL22_12155 PF01709 Transcriptional regulator NNL22_12170 PF00849 RNA pseudouridylate synthase NNL22_12170 PF01479 S4 domain NNL22_12175 PF00472 RF-1 domain NNL22_12200 PF12833 Helix-turn-helix domain NNL22_12200 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NNL22_12205 PF03848 Tellurite resistance protein TehB NNL22_12210 PF00990 Diguanylate cyclase, GGDEF domain NNL22_12210 PF17158 Membrane-associated sensor, integral membrane domain NNL22_12220 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NNL22_12230 PF03109 ABC1 family NNL22_12235 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NNL22_12235 PF04055 Radical SAM superfamily NNL22_12240 PF03099 Biotin/lipoate A/B protein ligase family NNL22_12245 PF04359 Protein of unknown function (DUF493) NNL22_12250 PF01063 Amino-transferase class IV NNL22_12255 PF00768 D-alanyl-D-alanine carboxypeptidase NNL22_12255 PF07943 Penicillin-binding protein 5, C-terminal domain NNL22_12260 PF03330 Lytic transglycolase NNL22_12260 PF05036 Sporulation related domain NNL22_12265 PF13406 Transglycosylase SLT domain NNL22_12270 PF01098 Cell cycle protein NNL22_12275 PF03717 Penicillin-binding Protein dimerisation domain NNL22_12275 PF00905 Penicillin binding protein transpeptidase domain NNL22_12280 PF02590 Predicted SPOUT methyltransferase NNL22_12290 PF01467 Cytidylyltransferase-like NNL22_12295 PF00171 Aldehyde dehydrogenase family NNL22_12310 PF09335 SNARE associated Golgi protein NNL22_12315 PF05362 Lon protease (S16) C-terminal proteolytic domain NNL22_12315 PF00004 ATPase family associated with various cellular activities (AAA) NNL22_12315 PF02190 ATP-dependent protease La (LON) substrate-binding domain NNL22_12325 PF07885 Ion channel NNL22_12335 PF00920 Dehydratase family NNL22_12340 PF00186 Dihydrofolate reductase NNL22_12345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NNL22_12345 PF08447 PAS fold NNL22_12345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NNL22_12345 PF08447 PAS fold NNL22_12350 PF00303 Thymidylate synthase NNL22_12355 PF01790 Prolipoprotein diacylglyceryl transferase NNL22_12360 PF01925 Sulfite exporter TauE/SafE NNL22_12375 PF00691 OmpA family NNL22_12375 PF13677 Membrane MotB of proton-channel complex MotA/MotB NNL22_12380 PF01618 MotA/TolQ/ExbB proton channel family NNL22_12385 PF02609 Exonuclease VII small subunit NNL22_12390 PF00348 Polyprenyl synthetase NNL22_12395 PF02779 Transketolase, pyrimidine binding domain NNL22_12395 PF02780 Transketolase, C-terminal domain NNL22_12395 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NNL22_12400 PF00925 GTP cyclohydrolase II NNL22_12405 PF06463 Molybdenum Cofactor Synthesis C NNL22_12405 PF04055 Radical SAM superfamily NNL22_12410 PF01967 MoaC family NNL22_12415 PF02581 Thiamine monophosphate synthase NNL22_12420 PF01960 ArgJ family NNL22_12425 PF02810 SEC-C motif NNL22_12425 PF07517 SecA DEAD-like domain NNL22_12425 PF01043 SecA preprotein cross-linking domain NNL22_12425 PF07516 SecA Wing and Scaffold domain NNL22_12430 PF01476 LysM domain NNL22_12430 PF08525 Opacity-associated protein A N-terminal motif NNL22_12430 PF01551 Peptidase family M23 NNL22_12440 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NNL22_12445 PF00091 Tubulin/FtsZ family, GTPase domain NNL22_12445 PF12327 FtsZ family, C-terminal domain NNL22_12450 PF02491 SHS2 domain inserted in FTSA NNL22_12455 PF03799 Cell division protein FtsQ NNL22_12455 PF08478 POTRA domain, FtsQ-type NNL22_12460 PF07478 D-ala D-ala ligase C-terminus NNL22_12460 PF01820 D-ala D-ala ligase N-terminus NNL22_12465 PF01225 Mur ligase family, catalytic domain NNL22_12465 PF02875 Mur ligase family, glutamate ligase domain NNL22_12465 PF08245 Mur ligase middle domain NNL22_12470 PF04101 Glycosyltransferase family 28 C-terminal domain NNL22_12470 PF03033 Glycosyltransferase family 28 N-terminal domain NNL22_12475 PF01098 Cell cycle protein NNL22_12480 PF02875 Mur ligase family, glutamate ligase domain NNL22_12480 PF08245 Mur ligase middle domain NNL22_12485 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NNL22_12485 PF00953 Glycosyl transferase family 4 NNL22_12490 PF01225 Mur ligase family, catalytic domain NNL22_12490 PF02875 Mur ligase family, glutamate ligase domain NNL22_12490 PF08245 Mur ligase middle domain NNL22_12495 PF08245 Mur ligase middle domain NNL22_12495 PF01225 Mur ligase family, catalytic domain NNL22_12495 PF02875 Mur ligase family, glutamate ligase domain NNL22_12500 PF00905 Penicillin binding protein transpeptidase domain NNL22_12500 PF03717 Penicillin-binding Protein dimerisation domain NNL22_12505 PF04999 Cell division protein FtsL NNL22_12510 PF01795 MraW methylase family NNL22_12515 PF02381 MraZ protein, putative antitoxin-like NNL22_12525 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NNL22_12530 PF04348 LppC putative lipoprotein NNL22_12535 PF02021 Uncharacterised protein family UPF0102 NNL22_12540 PF13580 SIS domain NNL22_12545 PF04386 Stringent starvation protein B NNL22_12550 PF02798 Glutathione S-transferase, N-terminal domain NNL22_12550 PF00043 Glutathione S-transferase, C-terminal domain NNL22_12555 PF02167 Cytochrome C1 family NNL22_12560 PF00032 Cytochrome b(C-terminal)/b6/petD NNL22_12560 PF00033 Cytochrome b/b6/petB NNL22_12565 PF00355 Rieske [2Fe-2S] domain NNL22_12565 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NNL22_12570 PF00380 Ribosomal protein S9/S16 NNL22_12575 PF00572 Ribosomal protein L13 NNL22_12580 PF01026 TatD related DNase NNL22_12585 PF00009 Elongation factor Tu GTP binding domain NNL22_12585 PF16658 Class II release factor RF3, C-terminal domain NNL22_12590 PF02743 Cache domain NNL22_12590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_12590 PF00512 His Kinase A (phospho-acceptor) domain NNL22_12595 PF00072 Response regulator receiver domain NNL22_12600 PF00583 Acetyltransferase (GNAT) family NNL22_12610 PF08502 LeuA allosteric (dimerisation) domain NNL22_12610 PF00682 HMGL-like NNL22_12615 PF12833 Helix-turn-helix domain NNL22_12615 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NNL22_12650 PF01066 CDP-alcohol phosphatidyltransferase NNL22_12655 PF10369 Small subunit of acetolactate synthase NNL22_12660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NNL22_12660 PF00205 Thiamine pyrophosphate enzyme, central domain NNL22_12660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NNL22_12675 PF00004 ATPase family associated with various cellular activities (AAA) NNL22_12675 PF07724 AAA domain (Cdc48 subfamily) NNL22_12675 PF17871 AAA lid domain NNL22_12675 PF02861 Clp amino terminal domain, pathogenicity island component NNL22_12675 PF10431 C-terminal, D2-small domain, of ClpB protein NNL22_12680 PF02578 Multi-copper polyphenol oxidoreductase laccase NNL22_12685 PF00849 RNA pseudouridylate synthase NNL22_12685 PF01479 S4 domain NNL22_12690 PF13525 Outer membrane lipoprotein NNL22_12695 PF02540 NAD synthase NNL22_12695 PF00795 Carbon-nitrogen hydrolase NNL22_12700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_12700 PF00512 His Kinase A (phospho-acceptor) domain NNL22_12705 PF02954 Bacterial regulatory protein, Fis family NNL22_12705 PF00072 Response regulator receiver domain NNL22_12705 PF00158 Sigma-54 interaction domain NNL22_12710 PF01266 FAD dependent oxidoreductase NNL22_12750 PF05567 Neisseria PilC beta-propeller domain NNL22_12760 PF02401 LytB protein NNL22_12765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NNL22_12770 PF01252 Signal peptidase (SPase) II NNL22_12775 PF08264 Anticodon-binding domain of tRNA NNL22_12775 PF00133 tRNA synthetases class I (I, L, M and V) NNL22_12775 PF06827 Zinc finger found in FPG and IleRS NNL22_12780 PF06574 FAD synthetase NNL22_12780 PF01687 Riboflavin kinase NNL22_12785 PF03023 Lipid II flippase MurJ NNL22_12790 PF01649 Ribosomal protein S20 NNL22_12795 PF00696 Amino acid kinase family NNL22_12795 PF01472 PUA domain NNL22_12800 PF01018 GTP1/OBG NNL22_12800 PF01926 50S ribosome-binding GTPase NNL22_12805 PF01016 Ribosomal L27 protein NNL22_12810 PF00829 Ribosomal prokaryotic L21 protein NNL22_12815 PF00348 Polyprenyl synthetase NNL22_12820 PF06974 Protein of unknown function (DUF1298) NNL22_12820 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NNL22_12825 PF01871 AMMECR1 NNL22_12830 PF01875 Memo-like protein NNL22_12845 PF04608 Phosphatidylglycerophosphatase A NNL22_12850 PF00586 AIR synthase related protein, N-terminal domain NNL22_12850 PF02769 AIR synthase related protein, C-terminal domain NNL22_12855 PF01029 NusB family NNL22_12860 PF00885 6,7-dimethyl-8-ribityllumazine synthase NNL22_12865 PF00925 GTP cyclohydrolase II NNL22_12865 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NNL22_12870 PF00677 Lumazine binding domain NNL22_12875 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NNL22_12875 PF01872 RibD C-terminal domain NNL22_12880 PF03477 ATP cone domain NNL22_12885 PF00464 Serine hydroxymethyltransferase NNL22_12890 PF12848 ABC transporter NNL22_12890 PF00005 ABC transporter NNL22_12895 PF07238 PilZ domain NNL22_12900 PF18073 Rubredoxin metal binding domain NNL22_12905 PF01053 Cys/Met metabolism PLP-dependent enzyme NNL22_12910 PF01208 Uroporphyrinogen decarboxylase (URO-D) NNL22_12915 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NNL22_12915 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_12920 PF00310 Glutamine amidotransferases class-II NNL22_12920 PF04898 Glutamate synthase central domain NNL22_12920 PF01645 Conserved region in glutamate synthase NNL22_12920 PF01493 GXGXG motif NNL22_12930 PF01761 3-dehydroquinate synthase NNL22_12935 PF01202 Shikimate kinase NNL22_12940 PF11741 AMIN domain NNL22_12940 PF00263 Bacterial type II and III secretion system protein NNL22_12940 PF03958 Bacterial type II/III secretion system short domain NNL22_12940 PF07660 Secretin and TonB N terminus short domain NNL22_12945 PF04351 Pilus assembly protein, PilP NNL22_12950 PF04350 Pilus assembly protein, PilO NNL22_12955 PF05137 Fimbrial assembly protein (PilN) NNL22_12960 PF11104 Type IV pilus assembly protein PilM; NNL22_12965 PF17092 Penicillin-binding protein OB-like domain NNL22_12965 PF00912 Transglycosylase NNL22_12965 PF00905 Penicillin binding protein transpeptidase domain NNL22_12975 PF01323 DSBA-like thioredoxin domain NNL22_12980 PF00034 Cytochrome c NNL22_12985 PF01926 50S ribosome-binding GTPase NNL22_12995 PF00171 Aldehyde dehydrogenase family NNL22_13000 PF01467 Cytidylyltransferase-like NNL22_13005 PF00037 4Fe-4S binding domain NNL22_13030 PF01594 AI-2E family transporter NNL22_13035 PF02503 Polyphosphate kinase middle domain NNL22_13035 PF13090 Polyphosphate kinase C-terminal domain 2 NNL22_13035 PF17941 Polyphosphate kinase C-terminal domain 1 NNL22_13035 PF13089 Polyphosphate kinase N-terminal domain NNL22_13040 PF00490 Delta-aminolevulinic acid dehydratase NNL22_13065 PF05127 Helicase NNL22_13065 PF17176 tRNA-binding domain NNL22_13065 PF08351 Domain of unknown function (DUF1726) NNL22_13065 PF13718 GNAT acetyltransferase 2 NNL22_13080 PF18158 Adaptive response protein AidB N-terminal domain NNL22_13080 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_13080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_13115 PF00282 Pyridoxal-dependent decarboxylase conserved domain NNL22_13130 PF00563 EAL domain NNL22_13130 PF01590 GAF domain NNL22_13130 PF00990 Diguanylate cyclase, GGDEF domain NNL22_13130 PF00360 Phytochrome region NNL22_13135 PF01384 Phosphate transporter family NNL22_13145 PF00990 Diguanylate cyclase, GGDEF domain NNL22_13150 PF00563 EAL domain NNL22_13150 PF00990 Diguanylate cyclase, GGDEF domain NNL22_13150 PF03707 Bacterial signalling protein N terminal repeat NNL22_13155 PF12706 Beta-lactamase superfamily domain NNL22_13175 PF18113 Rubredoxin binding C-terminal domain NNL22_13175 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_13180 PF00301 Rubredoxin NNL22_13185 PF04345 Chorismate lyase NNL22_13190 PF01040 UbiA prenyltransferase family NNL22_13195 PF00486 Transcriptional regulatory protein, C terminal NNL22_13195 PF00072 Response regulator receiver domain NNL22_13200 PF00989 PAS fold NNL22_13200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_13200 PF00512 His Kinase A (phospho-acceptor) domain NNL22_13200 PF11808 Phosphate regulon sensor protein PhoR NNL22_13215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_13215 PF03466 LysR substrate binding domain NNL22_13220 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NNL22_13220 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NNL22_13225 PF00005 ABC transporter NNL22_13230 PF00072 Response regulator receiver domain NNL22_13245 PF00849 RNA pseudouridylate synthase NNL22_13270 PF00005 ABC transporter NNL22_13275 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_13280 PF02769 AIR synthase related protein, C-terminal domain NNL22_13280 PF00586 AIR synthase related protein, N-terminal domain NNL22_13285 PF05552 Conserved TM helix NNL22_13285 PF00924 Mechanosensitive ion channel NNL22_13295 PF01494 FAD binding domain NNL22_13300 PF01230 HIT domain NNL22_13315 PF01895 PhoU domain NNL22_13320 PF00005 ABC transporter NNL22_13325 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_13330 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_13335 PF12849 PBP superfamily domain NNL22_13345 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NNL22_13350 PF03061 Thioesterase superfamily NNL22_13355 PF00072 Response regulator receiver domain NNL22_13355 PF00990 Diguanylate cyclase, GGDEF domain NNL22_13360 PF10672 S-adenosylmethionine-dependent methyltransferase NNL22_13360 PF17785 PUA-like domain NNL22_13365 PF02254 TrkA-N domain NNL22_13365 PF00999 Sodium/hydrogen exchanger family NNL22_13365 PF02080 TrkA-C domain NNL22_13370 PF00990 Diguanylate cyclase, GGDEF domain NNL22_13375 PF13545 Crp-like helix-turn-helix domain NNL22_13375 PF00027 Cyclic nucleotide-binding domain NNL22_13380 PF02566 OsmC-like protein NNL22_13390 PF02675 S-adenosylmethionine decarboxylase NNL22_13395 PF00485 Phosphoribulokinase / Uridine kinase family NNL22_13400 PF00563 EAL domain NNL22_13400 PF00990 Diguanylate cyclase, GGDEF domain NNL22_13400 PF08448 PAS fold NNL22_13410 PF00583 Acetyltransferase (GNAT) family NNL22_13410 PF00696 Amino acid kinase family NNL22_13415 PF01546 Peptidase family M20/M25/M40 NNL22_13415 PF07687 Peptidase dimerisation domain NNL22_13425 PF00990 Diguanylate cyclase, GGDEF domain NNL22_13430 PF00696 Amino acid kinase family NNL22_13435 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NNL22_13435 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NNL22_13435 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NNL22_13435 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NNL22_13440 PF00692 dUTPase NNL22_13445 PF04127 DNA / pantothenate metabolism flavoprotein NNL22_13445 PF02441 Flavoprotein NNL22_13450 PF04002 RadC-like JAB domain NNL22_13455 PF00830 Ribosomal L28 family NNL22_13460 PF00471 Ribosomal protein L33 NNL22_13465 PF00390 Malic enzyme, N-terminal domain NNL22_13465 PF03949 Malic enzyme, NAD binding domain NNL22_13475 PF01197 Ribosomal protein L31 NNL22_13480 PF18074 Primosomal protein N C-terminal domain NNL22_13480 PF00270 DEAD/DEAH box helicase NNL22_13480 PF00271 Helicase conserved C-terminal domain NNL22_13480 PF17764 3′ DNA-binding domain (3′BD) NNL22_13480 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NNL22_13485 PF00750 tRNA synthetases class I (R) NNL22_13485 PF03485 Arginyl tRNA synthetase N terminal domain NNL22_13485 PF05746 DALR anticodon binding domain NNL22_13495 PF00227 Proteasome subunit NNL22_13500 PF00004 ATPase family associated with various cellular activities (AAA) NNL22_13500 PF07724 AAA domain (Cdc48 subfamily) NNL22_13500 PF10431 C-terminal, D2-small domain, of ClpB protein NNL22_13515 PF05524 PEP-utilising enzyme, N-terminal NNL22_13515 PF01590 GAF domain NNL22_13515 PF00391 PEP-utilising enzyme, mobile domain NNL22_13515 PF02896 PEP-utilising enzyme, TIM barrel domain NNL22_13520 PF00293 NUDIX domain NNL22_13535 PF17785 PUA-like domain NNL22_13535 PF10672 S-adenosylmethionine-dependent methyltransferase NNL22_13545 PF02347 Glycine cleavage system P-protein NNL22_13550 PF02347 Glycine cleavage system P-protein NNL22_13555 PF01597 Glycine cleavage H-protein NNL22_13560 PF08669 Glycine cleavage T-protein C-terminal barrel domain NNL22_13560 PF01571 Aminomethyltransferase folate-binding domain NNL22_13565 PF05728 Uncharacterised protein family (UPF0227) NNL22_13570 PF00149 Calcineurin-like phosphoesterase NNL22_13580 PF00293 NUDIX domain NNL22_13585 PF01964 Radical SAM ThiC family NNL22_13585 PF13667 ThiC-associated domain NNL22_13590 PF02321 Outer membrane efflux protein NNL22_13595 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NNL22_13610 PF01522 Polysaccharide deacetylase NNL22_13625 PF00535 Glycosyl transferase family 2 NNL22_13640 PF00535 Glycosyl transferase family 2 NNL22_13650 PF08335 GlnD PII-uridylyltransferase NNL22_13650 PF03710 Glutamate-ammonia ligase adenylyltransferase NNL22_13685 PF00005 ABC transporter NNL22_13690 PF00497 Bacterial extracellular solute-binding proteins, family 3 NNL22_13695 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_13700 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_13705 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NNL22_13710 PF04996 Succinylarginine dihydrolase NNL22_13715 PF00171 Aldehyde dehydrogenase family NNL22_13720 PF04958 Arginine N-succinyltransferase beta subunit NNL22_13725 PF04958 Arginine N-succinyltransferase beta subunit NNL22_13730 PF00202 Aminotransferase class-III NNL22_13735 PF12729 Four helix bundle sensory module for signal transduction NNL22_13735 PF00672 HAMP domain NNL22_13735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NNL22_13740 PF12833 Helix-turn-helix domain NNL22_13745 PF01266 FAD dependent oxidoreductase NNL22_13750 PF00106 short chain dehydrogenase NNL22_13770 PF01636 Phosphotransferase enzyme family NNL22_13785 PF13649 Methyltransferase domain NNL22_13790 PF08003 Protein of unknown function (DUF1698) NNL22_13795 PF00709 Adenylosuccinate synthetase NNL22_13800 PF13393 Histidyl-tRNA synthetase NNL22_13810 PF01145 SPFH domain / Band 7 family NNL22_13815 PF01145 SPFH domain / Band 7 family NNL22_13815 PF12221 Bacterial membrane protein N terminal NNL22_13820 PF16360 GTP-binding GTPase Middle Region NNL22_13820 PF13167 GTP-binding GTPase N-terminal NNL22_13820 PF01926 50S ribosome-binding GTPase NNL22_13825 PF17209 Hfq protein NNL22_13835 PF01119 DNA mismatch repair protein, C-terminal domain NNL22_13835 PF08676 MutL C terminal dimerisation domain NNL22_13840 PF01520 N-acetylmuramoyl-L-alanine amidase NNL22_13840 PF11741 AMIN domain NNL22_13845 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NNL22_13850 PF01256 Carbohydrate kinase NNL22_13850 PF03853 YjeF-related protein N-terminus NNL22_13855 PF08331 Domain of unknown function (DUF1730) NNL22_13860 PF00929 Exonuclease NNL22_13865 PF03193 RsgA GTPase NNL22_13870 PF00691 OmpA family NNL22_13870 PF13677 Membrane MotB of proton-channel complex MotA/MotB NNL22_13875 PF01618 MotA/TolQ/ExbB proton channel family NNL22_13885 PF00581 Rhodanese-like domain NNL22_13890 PF02666 Phosphatidylserine decarboxylase NNL22_13895 PF00152 tRNA synthetases class II (D, K and N) NNL22_13900 PF01132 Elongation factor P (EF-P) OB domain NNL22_13900 PF09285 Elongation factor P, C-terminal NNL22_13900 PF08207 Elongation factor P (EF-P) KOW-like domain NNL22_13905 PF04055 Radical SAM superfamily NNL22_13925 PF03989 DNA gyrase C-terminal domain, beta-propeller NNL22_13925 PF00521 DNA gyrase/topoisomerase IV, subunit A NNL22_13930 PF00817 impB/mucB/samB family NNL22_13930 PF11798 IMS family HHH motif NNL22_13935 PF03775 Septum formation inhibitor MinC, C-terminal domain NNL22_13935 PF05209 Septum formation inhibitor MinC, N-terminal domain NNL22_13940 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NNL22_13945 PF03776 Septum formation topological specificity factor MinE NNL22_13965 PF08359 YsiA-like protein, C-terminal region NNL22_13965 PF00440 Bacterial regulatory proteins, tetR family NNL22_13970 PF02562 PhoH-like protein NNL22_13970 PF13638 PIN domain NNL22_13990 PF03466 LysR substrate binding domain NNL22_13990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_14000 PF13545 Crp-like helix-turn-helix domain NNL22_14000 PF00027 Cyclic nucleotide-binding domain NNL22_14005 PF00899 ThiF family NNL22_14010 PF13847 Methyltransferase domain NNL22_14010 PF17827 PrmC N-terminal domain NNL22_14015 PF03462 PCRF domain NNL22_14015 PF00472 RF-1 domain NNL22_14020 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NNL22_14020 PF01488 Shikimate / quinate 5-dehydrogenase NNL22_14020 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NNL22_14030 PF03550 Outer membrane lipoprotein LolB NNL22_14035 PF08544 GHMP kinases C terminal NNL22_14035 PF00288 GHMP kinases N terminal domain NNL22_14045 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NNL22_14045 PF14572 Phosphoribosyl synthetase-associated domain NNL22_14050 PF01386 Ribosomal L25p family NNL22_14050 PF14693 Ribosomal protein TL5, C-terminal domain NNL22_14055 PF01195 Peptidyl-tRNA hydrolase NNL22_14060 PF01926 50S ribosome-binding GTPase NNL22_14060 PF06071 Protein of unknown function (DUF933) NNL22_14070 PF07963 Prokaryotic N-terminal methylation motif NNL22_14070 PF00114 Pilin (bacterial filament) NNL22_14080 PF00482 Type II secretion system (T2SS), protein F NNL22_14125 PF00360 Phytochrome region NNL22_14125 PF01590 GAF domain NNL22_14125 PF00990 Diguanylate cyclase, GGDEF domain NNL22_14125 PF00563 EAL domain NNL22_14135 PF03625 Domain of unknown function DUF302 NNL22_14135 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NNL22_14145 PF00873 AcrB/AcrD/AcrF family NNL22_14150 PF00109 Beta-ketoacyl synthase, N-terminal domain NNL22_14150 PF02801 Beta-ketoacyl synthase, C-terminal domain NNL22_14160 PF00325 Bacterial regulatory proteins, crp family NNL22_14160 PF00027 Cyclic nucleotide-binding domain NNL22_14165 PF03922 OmpW family NNL22_14175 PF01168 Alanine racemase, N-terminal domain NNL22_14175 PF00842 Alanine racemase, C-terminal domain NNL22_14180 PF00772 DnaB-like helicase N terminal domain NNL22_14180 PF03796 DnaB-like helicase C terminal domain NNL22_14185 PF03948 Ribosomal protein L9, C-terminal domain NNL22_14185 PF01281 Ribosomal protein L9, N-terminal domain NNL22_14195 PF01084 Ribosomal protein S18 NNL22_14200 PF01250 Ribosomal protein S6 NNL22_14205 PF08032 RNA 2'-O ribose methyltransferase substrate binding NNL22_14205 PF00588 SpoU rRNA Methylase family NNL22_14210 PF00575 S1 RNA binding domain NNL22_14210 PF00773 RNB domain NNL22_14210 PF08206 Ribonuclease B OB domain NNL22_14210 PF08461 Ribonuclease R winged-helix domain NNL22_14210 PF17876 Cold shock domain NNL22_14235 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NNL22_14240 PF00111 2Fe-2S iron-sulfur cluster binding domain NNL22_14240 PF01799 [2Fe-2S] binding domain NNL22_14245 PF04851 Type III restriction enzyme, res subunit NNL22_14245 PF00929 Exonuclease NNL22_14245 PF13307 Helicase C-terminal domain NNL22_14275 PF00005 ABC transporter NNL22_14275 PF02687 FtsX-like permease family NNL22_14275 PF12704 MacB-like periplasmic core domain NNL22_14280 PF02687 FtsX-like permease family NNL22_14280 PF12704 MacB-like periplasmic core domain NNL22_14285 PF02687 FtsX-like permease family NNL22_14285 PF00005 ABC transporter NNL22_14285 PF12704 MacB-like periplasmic core domain NNL22_14295 PF03061 Thioesterase superfamily NNL22_14300 PF06974 Protein of unknown function (DUF1298) NNL22_14300 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NNL22_14305 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NNL22_14305 PF02817 e3 binding domain NNL22_14305 PF00364 Biotin-requiring enzyme NNL22_14310 PF00456 Transketolase, thiamine diphosphate binding domain NNL22_14310 PF17831 Pyruvate dehydrogenase E1 component middle domain NNL22_14315 PF02754 Cysteine-rich domain NNL22_14320 PF11870 Domain of unknown function (DUF3390) NNL22_14320 PF13183 4Fe-4S dicluster domain NNL22_14320 PF02589 LUD domain NNL22_14325 PF02589 LUD domain NNL22_14355 PF13458 Periplasmic binding protein NNL22_14360 PF02653 Branched-chain amino acid transport system / permease component NNL22_14365 PF02653 Branched-chain amino acid transport system / permease component NNL22_14365 PF11862 Domain of unknown function (DUF3382) NNL22_14370 PF00005 ABC transporter NNL22_14370 PF12399 Branched-chain amino acid ATP-binding cassette transporter NNL22_14375 PF00005 ABC transporter NNL22_14390 PF02129 X-Pro dipeptidyl-peptidase (S15 family) NNL22_14395 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NNL22_14395 PF01138 3' exoribonuclease family, domain 1 NNL22_14395 PF03725 3' exoribonuclease family, domain 2 NNL22_14395 PF00575 S1 RNA binding domain NNL22_14395 PF00013 KH domain NNL22_14400 PF00312 Ribosomal protein S15 NNL22_14405 PF01509 TruB family pseudouridylate synthase (N terminal domain) NNL22_14405 PF09157 Pseudouridine synthase II TruB, C-terminal NNL22_14405 PF16198 tRNA pseudouridylate synthase B C-terminal domain NNL22_14410 PF02033 Ribosome-binding factor A NNL22_14415 PF04760 Translation initiation factor IF-2, N-terminal region NNL22_14415 PF11987 Translation-initiation factor 2 NNL22_14415 PF00009 Elongation factor Tu GTP binding domain NNL22_14415 PF08364 Bacterial translation initiation factor IF-2 associated region NNL22_14420 PF13184 NusA-like KH domain NNL22_14420 PF08529 NusA N-terminal domain NNL22_14420 PF00575 S1 RNA binding domain NNL22_14425 PF02576 RimP N-terminal domain NNL22_14425 PF17384 RimP C-terminal SH3 domain NNL22_14435 PF03840 Preprotein translocase SecG subunit NNL22_14440 PF00121 Triosephosphate isomerase NNL22_14445 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NNL22_14445 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NNL22_14445 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NNL22_14445 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NNL22_14450 PF00809 Pterin binding enzyme NNL22_14455 PF00004 ATPase family associated with various cellular activities (AAA) NNL22_14455 PF17862 AAA+ lid domain NNL22_14455 PF06480 FtsH Extracellular NNL22_14455 PF01434 Peptidase family M41 NNL22_14460 PF01728 FtsJ-like methyltransferase NNL22_14465 PF01985 CRS1 / YhbY (CRM) domain NNL22_14470 PF01272 Transcription elongation factor, GreA/GreB, C-term NNL22_14470 PF03449 Transcription elongation factor, N-terminal NNL22_14475 PF02142 MGS-like domain NNL22_14475 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NNL22_14475 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NNL22_14480 PF00117 Glutamine amidotransferase class-I NNL22_14480 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NNL22_14485 PF01113 Dihydrodipicolinate reductase, N-terminus NNL22_14485 PF05173 Dihydrodipicolinate reductase, C-terminus NNL22_14490 PF00684 DnaJ central domain NNL22_14490 PF01556 DnaJ C terminal domain NNL22_14490 PF00226 DnaJ domain NNL22_14495 PF00012 Hsp70 protein NNL22_14500 PF01025 GrpE NNL22_14505 PF02463 RecF/RecN/SMC N terminal domain NNL22_14510 PF01475 Ferric uptake regulator family NNL22_14515 PF04355 SmpA / OmlA family NNL22_14520 PF03658 RnfH family Ubiquitin NNL22_14525 PF03364 Polyketide cyclase / dehydrase and lipid transport NNL22_14530 PF00209 Sodium:neurotransmitter symporter family NNL22_14535 PF01668 SmpB protein NNL22_14545 PF13356 Arm DNA-binding domain NNL22_14545 PF00589 Phage integrase family NNL22_14570 PF04002 RadC-like JAB domain NNL22_14575 PF00589 Phage integrase family NNL22_14595 PF00004 ATPase family associated with various cellular activities (AAA) NNL22_14600 PF00271 Helicase conserved C-terminal domain NNL22_14600 PF08463 EcoEI R protein C-terminal NNL22_14600 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) NNL22_14600 PF04851 Type III restriction enzyme, res subunit NNL22_14610 PF13148 Protein of unknown function (DUF3987) NNL22_14615 PF05930 Prophage CP4-57 regulatory protein (AlpA) NNL22_14645 PF00239 Resolvase, N terminal domain NNL22_14645 PF02796 Helix-turn-helix domain of resolvase NNL22_14705 PF13091 PLD-like domain NNL22_14715 PF00005 ABC transporter NNL22_14755 PF01979 Amidohydrolase family NNL22_14775 PF12833 Helix-turn-helix domain NNL22_14775 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NNL22_14790 PF00011 Hsp20/alpha crystallin family NNL22_14805 PF03707 Bacterial signalling protein N terminal repeat NNL22_14805 PF00990 Diguanylate cyclase, GGDEF domain NNL22_14805 PF00563 EAL domain NNL22_14815 PF01903 CbiX NNL22_14820 PF08212 Lipocalin-like domain NNL22_14825 PF08338 Domain of unknown function (DUF1731) NNL22_14825 PF01370 NAD dependent epimerase/dehydratase family NNL22_14830 PF13411 MerR HTH family regulatory protein NNL22_14855 PF00072 Response regulator receiver domain NNL22_14855 PF00158 Sigma-54 interaction domain NNL22_14865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_14865 PF00512 His Kinase A (phospho-acceptor) domain NNL22_14875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_14875 PF00512 His Kinase A (phospho-acceptor) domain NNL22_14880 PF00270 DEAD/DEAH box helicase NNL22_14880 PF00271 Helicase conserved C-terminal domain NNL22_14880 PF00570 HRDC domain NNL22_14880 PF16124 RecQ zinc-binding NNL22_14880 PF09382 RQC domain NNL22_14895 PF02321 Outer membrane efflux protein NNL22_14905 PF13533 Biotin-lipoyl like NNL22_14915 PF01594 AI-2E family transporter NNL22_14920 PF00440 Bacterial regulatory proteins, tetR family NNL22_14925 PF00175 Oxidoreductase NAD-binding domain NNL22_14925 PF00111 2Fe-2S iron-sulfur cluster binding domain NNL22_14925 PF00970 Oxidoreductase FAD-binding domain NNL22_14930 PF00487 Fatty acid desaturase NNL22_14945 PF01674 Lipase (class 2) NNL22_14950 PF00990 Diguanylate cyclase, GGDEF domain NNL22_14955 PF03435 Saccharopine dehydrogenase NADP binding domain NNL22_14970 PF00149 Calcineurin-like phosphoesterase NNL22_15005 PF00378 Enoyl-CoA hydratase/isomerase NNL22_15015 PF00501 AMP-binding enzyme NNL22_15015 PF13193 AMP-binding enzyme C-terminal domain NNL22_15025 PF01209 ubiE/COQ5 methyltransferase family NNL22_15035 PF03109 ABC1 family NNL22_15040 PF01502 Phosphoribosyl-AMP cyclohydrolase NNL22_15045 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NNL22_15050 PF02416 mttA/Hcf106 family NNL22_15055 PF02416 mttA/Hcf106 family NNL22_15060 PF00902 Sec-independent protein translocase protein (TatC) NNL22_15065 PF04452 RNA methyltransferase NNL22_15075 PF01494 FAD binding domain NNL22_15080 PF01494 FAD binding domain NNL22_15085 PF05195 Aminopeptidase P, N-terminal domain NNL22_15085 PF00557 Metallopeptidase family M24 NNL22_15090 PF03695 Uncharacterised protein family (UPF0149) NNL22_15100 PF05164 Cell division protein ZapA NNL22_15110 PF01812 5-formyltetrahydrofolate cyclo-ligase family NNL22_15125 PF00291 Pyridoxal-phosphate dependent enzyme NNL22_15125 PF00585 C-terminal regulatory domain of Threonine dehydratase NNL22_15130 PF16925 Tetracyclin repressor-like, C-terminal domain NNL22_15130 PF00440 Bacterial regulatory proteins, tetR family NNL22_15135 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NNL22_15135 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_15140 PF00563 EAL domain NNL22_15140 PF03707 Bacterial signalling protein N terminal repeat NNL22_15140 PF00990 Diguanylate cyclase, GGDEF domain NNL22_15145 PF07690 Major Facilitator Superfamily NNL22_15150 PF02654 Cobalamin-5-phosphate synthase NNL22_15155 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NNL22_15190 PF03591 AzlC protein NNL22_15205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_15205 PF00512 His Kinase A (phospho-acceptor) domain NNL22_15205 PF09308 LuxQ, periplasmic NNL22_15205 PF00072 Response regulator receiver domain NNL22_15210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_15210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_15210 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_15215 PF00719 Inorganic pyrophosphatase NNL22_15220 PF12801 4Fe-4S binding domain NNL22_15220 PF04205 FMN-binding domain NNL22_15225 PF18793 Nitrous oxide reductase propeller repeat 2 NNL22_15225 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NNL22_15225 PF18764 Nitrous oxide reductase propeller repeat NNL22_15230 PF05048 Periplasmic copper-binding protein (NosD) NNL22_15235 PF00005 ABC transporter NNL22_15240 PF12679 ABC-2 family transporter protein NNL22_15245 PF05573 NosL NNL22_15255 PF03707 Bacterial signalling protein N terminal repeat NNL22_15255 PF00990 Diguanylate cyclase, GGDEF domain NNL22_15255 PF00563 EAL domain NNL22_15260 PF00563 EAL domain NNL22_15260 PF00072 Response regulator receiver domain NNL22_15260 PF00990 Diguanylate cyclase, GGDEF domain NNL22_15265 PF01220 Dehydroquinase class II NNL22_15270 PF00364 Biotin-requiring enzyme NNL22_15275 PF02785 Biotin carboxylase C-terminal domain NNL22_15275 PF00289 Biotin carboxylase, N-terminal domain NNL22_15275 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NNL22_15290 PF01207 Dihydrouridine synthase (Dus) NNL22_15300 PF01808 AICARFT/IMPCHase bienzyme NNL22_15300 PF02142 MGS-like domain NNL22_15305 PF02843 Phosphoribosylglycinamide synthetase, C domain NNL22_15305 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NNL22_15305 PF02844 Phosphoribosylglycinamide synthetase, N domain NNL22_15310 PF03616 Sodium/glutamate symporter NNL22_15315 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NNL22_15315 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_15320 PF00462 Glutaredoxin NNL22_15320 PF08534 Redoxin NNL22_15330 PF00793 DAHP synthetase I family NNL22_15355 PF01817 Chorismate mutase type II NNL22_15355 PF00800 Prephenate dehydratase NNL22_15360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NNL22_15365 PF00873 AcrB/AcrD/AcrF family NNL22_15375 PF14492 Elongation Factor G, domain II NNL22_15375 PF03764 Elongation factor G, domain IV NNL22_15375 PF00009 Elongation factor Tu GTP binding domain NNL22_15375 PF03144 Elongation factor Tu domain 2 NNL22_15375 PF00679 Elongation factor G C-terminus NNL22_15380 PF00072 Response regulator receiver domain NNL22_15380 PF00990 Diguanylate cyclase, GGDEF domain NNL22_15390 PF00459 Inositol monophosphatase family NNL22_15400 PF00440 Bacterial regulatory proteins, tetR family NNL22_15405 PF05690 Thiazole biosynthesis protein ThiG NNL22_15410 PF05690 Thiazole biosynthesis protein ThiG NNL22_15410 PF02597 ThiS family NNL22_15415 PF04241 Protein of unknown function (DUF423) NNL22_15420 PF00149 Calcineurin-like phosphoesterase NNL22_15425 PF00398 Ribosomal RNA adenine dimethylase NNL22_15430 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NNL22_15435 PF09312 SurA N-terminal domain NNL22_15435 PF00639 PPIC-type PPIASE domain NNL22_15440 PF04453 LPS transport system D NNL22_15440 PF03968 OstA-like protein NNL22_15445 PF01636 Phosphotransferase enzyme family NNL22_15450 PF00483 Nucleotidyl transferase NNL22_15460 PF00834 Ribulose-phosphate 3 epimerase family NNL22_15465 PF13419 Haloacid dehalogenase-like hydrolase NNL22_15470 PF00425 chorismate binding enzyme NNL22_15470 PF04715 Anthranilate synthase component I, N terminal region NNL22_15475 PF00117 Glutamine amidotransferase class-I NNL22_15480 PF00591 Glycosyl transferase family, a/b domain NNL22_15480 PF02885 Glycosyl transferase family, helical bundle domain NNL22_15485 PF00218 Indole-3-glycerol phosphate synthase NNL22_15490 PF01627 Hpt domain NNL22_15490 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NNL22_15490 PF00072 Response regulator receiver domain NNL22_15490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_15490 PF00672 HAMP domain NNL22_15490 PF00512 His Kinase A (phospho-acceptor) domain NNL22_15495 PF07813 LTXXQ motif family protein NNL22_15500 PF00486 Transcriptional regulatory protein, C terminal NNL22_15500 PF00072 Response regulator receiver domain NNL22_15505 PF00512 His Kinase A (phospho-acceptor) domain NNL22_15505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_15505 PF00672 HAMP domain NNL22_15505 PF16527 Two-component sensor protein CpxA, periplasmic domain NNL22_15510 PF00072 Response regulator receiver domain NNL22_15510 PF00486 Transcriptional regulatory protein, C terminal NNL22_15515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_15515 PF00512 His Kinase A (phospho-acceptor) domain NNL22_15515 PF00989 PAS fold NNL22_15515 PF16736 Single Cache-like NNL22_15520 PF03006 Haemolysin-III related NNL22_15535 PF01464 Transglycosylase SLT domain NNL22_15535 PF14718 Soluble lytic murein transglycosylase L domain NNL22_15540 PF13409 Glutathione S-transferase, N-terminal domain NNL22_15550 PF00085 Thioredoxin NNL22_15555 PF03707 Bacterial signalling protein N terminal repeat NNL22_15555 PF00990 Diguanylate cyclase, GGDEF domain NNL22_15555 PF00563 EAL domain NNL22_15575 PF01292 Prokaryotic cytochrome b561 NNL22_15630 PF01381 Helix-turn-helix NNL22_15630 PF09856 Predicted transcriptional regulator (DUF2083) NNL22_15630 PF06114 IrrE N-terminal-like domain NNL22_15635 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family NNL22_15655 PF05860 haemagglutination activity domain NNL22_15655 PF13332 Hemagglutinin repeat NNL22_15655 PF15526 Novel toxin 21 NNL22_15655 PF04829 Pre-toxin domain with VENN motif NNL22_15655 PF05594 Haemagluttinin repeat NNL22_15660 PF08479 POTRA domain, ShlB-type NNL22_15660 PF17287 POTRA domain NNL22_15660 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NNL22_15675 PF03480 Bacterial extracellular solute-binding protein, family 7 NNL22_15680 PF13361 UvrD-like helicase C-terminal domain NNL22_15680 PF00580 UvrD/REP helicase N-terminal domain NNL22_15685 PF00990 Diguanylate cyclase, GGDEF domain NNL22_15685 PF00563 EAL domain NNL22_15685 PF03707 Bacterial signalling protein N terminal repeat NNL22_15695 PF00072 Response regulator receiver domain NNL22_15705 PF00384 Molybdopterin oxidoreductase NNL22_15705 PF01568 Molydopterin dinucleotide binding domain NNL22_15710 PF01638 HxlR-like helix-turn-helix NNL22_15715 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NNL22_15730 PF08240 Alcohol dehydrogenase GroES-like domain NNL22_15730 PF00107 Zinc-binding dehydrogenase NNL22_15735 PF01177 Asp/Glu/Hydantoin racemase NNL22_15740 PF04237 YjbR NNL22_15745 PF00478 IMP dehydrogenase / GMP reductase domain NNL22_15745 PF00571 CBS domain NNL22_15750 PF00958 GMP synthase C terminal domain NNL22_15750 PF00117 Glutamine amidotransferase class-I NNL22_15750 PF02540 NAD synthase NNL22_15755 PF00465 Iron-containing alcohol dehydrogenase NNL22_15760 PF00171 Aldehyde dehydrogenase family NNL22_15765 PF00120 Glutamine synthetase, catalytic domain NNL22_15775 PF00107 Zinc-binding dehydrogenase NNL22_15775 PF08240 Alcohol dehydrogenase GroES-like domain NNL22_15780 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NNL22_15780 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NNL22_15790 PF00072 Response regulator receiver domain NNL22_15805 PF00465 Iron-containing alcohol dehydrogenase NNL22_15825 PF00171 Aldehyde dehydrogenase family NNL22_15835 PF05199 GMC oxidoreductase NNL22_15835 PF00732 GMC oxidoreductase NNL22_15845 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NNL22_15850 PF00440 Bacterial regulatory proteins, tetR family NNL22_15850 PF02909 Tetracyclin repressor-like, C-terminal domain NNL22_15855 PF02568 Thiamine biosynthesis protein (ThiI) NNL22_15855 PF02926 THUMP domain NNL22_15860 PF11892 Domain of unknown function (DUF3412) NNL22_15860 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NNL22_15860 PF03641 Possible lysine decarboxylase NNL22_15865 PF00034 Cytochrome c NNL22_15875 PF02311 AraC-like ligand binding domain NNL22_15875 PF12833 Helix-turn-helix domain NNL22_15880 PF00171 Aldehyde dehydrogenase family NNL22_15885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NNL22_15885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NNL22_15885 PF02770 Acyl-CoA dehydrogenase, middle domain NNL22_15890 PF00378 Enoyl-CoA hydratase/isomerase NNL22_15895 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NNL22_15895 PF00378 Enoyl-CoA hydratase/isomerase NNL22_15895 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NNL22_15900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NNL22_15900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NNL22_15915 PF00580 UvrD/REP helicase N-terminal domain NNL22_15915 PF13361 UvrD-like helicase C-terminal domain NNL22_15925 PF00743 Flavin-binding monooxygenase-like NNL22_15930 PF01734 Patatin-like phospholipase NNL22_15995 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NNL22_16000 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system NNL22_16055 PF01548 Transposase NNL22_16055 PF02371 Transposase IS116/IS110/IS902 family NNL22_16170 PF00589 Phage integrase family NNL22_16170 PF13495 Phage integrase, N-terminal SAM-like domain NNL22_16205 PF13519 von Willebrand factor type A domain NNL22_16205 PF01078 Magnesium chelatase, subunit ChlI NNL22_16205 PF17863 AAA lid domain NNL22_16210 PF00486 Transcriptional regulatory protein, C terminal NNL22_16210 PF00072 Response regulator receiver domain NNL22_16215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_16215 PF00672 HAMP domain NNL22_16215 PF00512 His Kinase A (phospho-acceptor) domain NNL22_16255 PF01272 Transcription elongation factor, GreA/GreB, C-term NNL22_16255 PF03449 Transcription elongation factor, N-terminal NNL22_16270 PF00512 His Kinase A (phospho-acceptor) domain NNL22_16270 PF18698 Histidine kinase sensor domain NNL22_16270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_16270 PF00989 PAS fold NNL22_16270 PF00672 HAMP domain NNL22_16275 PF00486 Transcriptional regulatory protein, C terminal NNL22_16275 PF00072 Response regulator receiver domain NNL22_16280 PF05099 Tellurite resistance protein TerB NNL22_16280 PF00226 DnaJ domain NNL22_16285 PF04542 Sigma-70 region 2 NNL22_16285 PF04545 Sigma-70, region 4 NNL22_16285 PF00140 Sigma-70 factor, region 1.2 NNL22_16290 PF18075 FtsX extracellular domain NNL22_16295 PF00005 ABC transporter NNL22_16300 PF02881 SRP54-type protein, helical bundle domain NNL22_16300 PF00448 SRP54-type protein, GTPase domain NNL22_16310 PF05378 Hydantoinase/oxoprolinase N-terminal region NNL22_16310 PF01968 Hydantoinase/oxoprolinase NNL22_16315 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NNL22_16315 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NNL22_16315 PF06827 Zinc finger found in FPG and IleRS NNL22_16325 PF00459 Inositol monophosphatase family NNL22_16330 PF13419 Haloacid dehalogenase-like hydrolase NNL22_16335 PF01479 S4 domain NNL22_16340 PF01430 Hsp33 protein NNL22_16345 PF01293 Phosphoenolpyruvate carboxykinase NNL22_16370 PF00216 Bacterial DNA-binding protein NNL22_16380 PF01914 MarC family integral membrane protein NNL22_16385 PF01979 Amidohydrolase family NNL22_16390 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NNL22_16390 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NNL22_16395 PF00156 Phosphoribosyl transferase domain NNL22_16400 PF03652 Holliday junction resolvase NNL22_16405 PF02622 Uncharacterized ACR, COG1678 NNL22_16415 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NNL22_16415 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NNL22_16420 PF00072 Response regulator receiver domain NNL22_16425 PF00072 Response regulator receiver domain NNL22_16430 PF01584 CheW-like domain NNL22_16435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NNL22_16435 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NNL22_16440 PF01739 CheR methyltransferase, SAM binding domain NNL22_16440 PF03705 CheR methyltransferase, all-alpha domain NNL22_16445 PF01584 CheW-like domain NNL22_16445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_16445 PF01627 Hpt domain NNL22_16445 PF00072 Response regulator receiver domain NNL22_16450 PF00072 Response regulator receiver domain NNL22_16450 PF01339 CheB methylesterase NNL22_16465 PF00005 ABC transporter NNL22_16470 PF00950 ABC 3 transport family NNL22_16480 PF01553 Acyltransferase NNL22_16495 PF00440 Bacterial regulatory proteins, tetR family NNL22_16510 PF04957 Ribosome modulation factor NNL22_16515 PF04262 Glutamate-cysteine ligase NNL22_16520 PF17674 HHH domain NNL22_16520 PF00575 S1 RNA binding domain NNL22_16520 PF09371 Tex-like protein N-terminal domain NNL22_16520 PF16921 Tex protein YqgF-like domain NNL22_16525 PF03707 Bacterial signalling protein N terminal repeat NNL22_16525 PF00990 Diguanylate cyclase, GGDEF domain NNL22_16525 PF00563 EAL domain NNL22_16530 PF00580 UvrD/REP helicase N-terminal domain NNL22_16530 PF13361 UvrD-like helicase C-terminal domain NNL22_16540 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_16540 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NNL22_16545 PF03551 Transcriptional regulator PadR-like family NNL22_16545 PF10400 Virulence activator alpha C-term NNL22_16550 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NNL22_16565 PF00497 Bacterial extracellular solute-binding proteins, family 3 NNL22_16585 PF00245 Alkaline phosphatase NNL22_16595 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NNL22_16600 PF05525 Branched-chain amino acid transport protein NNL22_16615 PF00487 Fatty acid desaturase NNL22_16620 PF00970 Oxidoreductase FAD-binding domain NNL22_16620 PF00111 2Fe-2S iron-sulfur cluster binding domain NNL22_16620 PF00175 Oxidoreductase NAD-binding domain NNL22_16625 PF12833 Helix-turn-helix domain NNL22_16625 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NNL22_16630 PF00313 'Cold-shock' DNA-binding domain NNL22_16640 PF00375 Sodium:dicarboxylate symporter family NNL22_16675 PF07726 ATPase family associated with various cellular activities (AAA) NNL22_16675 PF17863 AAA lid domain NNL22_16680 PF00884 Sulfatase NNL22_16680 PF16385 Domain of unknown function NNL22_16685 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase NNL22_16690 PF07859 alpha/beta hydrolase fold NNL22_16695 PF00563 EAL domain NNL22_16695 PF00990 Diguanylate cyclase, GGDEF domain NNL22_16695 PF03707 Bacterial signalling protein N terminal repeat NNL22_16705 PF03313 Serine dehydratase alpha chain NNL22_16705 PF03315 Serine dehydratase beta chain NNL22_16720 PF00561 alpha/beta hydrolase fold NNL22_16740 PF01645 Conserved region in glutamate synthase NNL22_16760 PF00005 ABC transporter NNL22_16765 PF02405 Permease MlaE NNL22_16780 PF08713 DNA alkylation repair enzyme NNL22_16825 PF01261 Xylose isomerase-like TIM barrel NNL22_16885 PF04357 TamB, inner membrane protein subunit of TAM complex NNL22_16890 PF17243 POTRA domain TamA domain 1 NNL22_16890 PF01103 Surface antigen NNL22_16890 PF07244 Surface antigen variable number repeat NNL22_16895 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NNL22_16895 PF12833 Helix-turn-helix domain NNL22_16900 PF06629 MltA-interacting protein MipA NNL22_16910 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NNL22_16910 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NNL22_16915 PF00676 Dehydrogenase E1 component NNL22_16920 PF02779 Transketolase, pyrimidine binding domain NNL22_16920 PF02780 Transketolase, C-terminal domain NNL22_16925 PF00364 Biotin-requiring enzyme NNL22_16925 PF02817 e3 binding domain NNL22_16925 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NNL22_16960 PF13091 PLD-like domain NNL22_16975 PF01734 Patatin-like phospholipase NNL22_16985 PF03707 Bacterial signalling protein N terminal repeat NNL22_16985 PF00563 EAL domain NNL22_16985 PF00990 Diguanylate cyclase, GGDEF domain NNL22_16990 PF07715 TonB-dependent Receptor Plug Domain NNL22_16990 PF00593 TonB dependent receptor NNL22_17000 PF01032 FecCD transport family NNL22_17005 PF00005 ABC transporter NNL22_17020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_17020 PF00512 His Kinase A (phospho-acceptor) domain NNL22_17020 PF01627 Hpt domain NNL22_17020 PF00072 Response regulator receiver domain NNL22_17025 PF00990 Diguanylate cyclase, GGDEF domain NNL22_17040 PF01678 Diaminopimelate epimerase NNL22_17045 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NNL22_17045 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NNL22_17055 PF12633 Adenylate cyclase NT domain NNL22_17055 PF01295 Adenylate cyclase, class-I NNL22_17060 PF08448 PAS fold NNL22_17060 PF00563 EAL domain NNL22_17060 PF00990 Diguanylate cyclase, GGDEF domain NNL22_17065 PF14698 Argininosuccinate lyase C-terminal NNL22_17065 PF00206 Lyase NNL22_17070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_17070 PF06580 Histidine kinase NNL22_17075 PF04397 LytTr DNA-binding domain NNL22_17075 PF00072 Response regulator receiver domain NNL22_17080 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NNL22_17080 PF03900 Porphobilinogen deaminase, C-terminal domain NNL22_17090 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase NNL22_17095 PF07719 Tetratricopeptide repeat NNL22_17095 PF07219 HemY protein N-terminus NNL22_17105 PF00175 Oxidoreductase NAD-binding domain NNL22_17105 PF00970 Oxidoreductase FAD-binding domain NNL22_17110 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NNL22_17115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NNL22_17115 PF07498 Rho termination factor, N-terminal domain NNL22_17115 PF07497 Rho termination factor, RNA-binding domain NNL22_17125 PF00994 Probable molybdopterin binding domain NNL22_17130 PF03454 MoeA C-terminal region (domain IV) NNL22_17130 PF03453 MoeA N-terminal region (domain I and II) NNL22_17130 PF00994 Probable molybdopterin binding domain NNL22_17135 PF02597 ThiS family NNL22_17140 PF02391 MoaE protein NNL22_17145 PF12804 MobA-like NTP transferase domain NNL22_17155 PF00196 Bacterial regulatory proteins, luxR family NNL22_17155 PF00072 Response regulator receiver domain NNL22_17160 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NNL22_17160 PF00672 HAMP domain NNL22_17160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_17160 PF07730 Histidine kinase NNL22_17175 PF10518 TAT (twin-arginine translocation) pathway signal sequence NNL22_17175 PF01568 Molydopterin dinucleotide binding domain NNL22_17175 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NNL22_17175 PF00384 Molybdopterin oxidoreductase NNL22_17180 PF12800 4Fe-4S binding domain NNL22_17180 PF12838 4Fe-4S dicluster domain NNL22_17185 PF12801 4Fe-4S binding domain NNL22_17185 PF12837 4Fe-4S binding domain NNL22_17190 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) NNL22_17195 PF03264 NapC/NirT cytochrome c family, N-terminal region NNL22_17205 PF00085 Thioredoxin NNL22_17210 PF02541 Ppx/GppA phosphatase family NNL22_17230 PF12848 ABC transporter NNL22_17230 PF00005 ABC transporter NNL22_17245 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NNL22_17245 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NNL22_17255 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ NNL22_17260 PF02600 Disulfide bond formation protein DsbB NNL22_17265 PF00561 alpha/beta hydrolase fold NNL22_17275 PF01227 GTP cyclohydrolase I NNL22_17280 PF02152 Dihydroneopterin aldolase NNL22_17285 PF13380 CoA binding domain NNL22_17295 PF01541 GIY-YIG catalytic domain NNL22_17310 PF07859 alpha/beta hydrolase fold NNL22_17320 PF11871 Domain of unknown function (DUF3391) NNL22_17320 PF01966 HD domain NNL22_17325 PF03006 Haemolysin-III related NNL22_17350 PF01169 Uncharacterized protein family UPF0016 NNL22_17355 PF13411 MerR HTH family regulatory protein NNL22_17360 PF00403 Heavy-metal-associated domain NNL22_17375 PF01740 STAS domain NNL22_17385 PF08461 Ribonuclease R winged-helix domain NNL22_17385 PF08206 Ribonuclease B OB domain NNL22_17385 PF00773 RNB domain NNL22_17385 PF00575 S1 RNA binding domain NNL22_17385 PF17876 Cold shock domain NNL22_17415 PF00563 EAL domain NNL22_17415 PF00990 Diguanylate cyclase, GGDEF domain NNL22_17415 PF03707 Bacterial signalling protein N terminal repeat NNL22_17420 PF08447 PAS fold NNL22_17420 PF08448 PAS fold NNL22_17420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_17425 PF13458 Periplasmic binding protein NNL22_17430 PF00563 EAL domain NNL22_17430 PF01590 GAF domain NNL22_17430 PF00990 Diguanylate cyclase, GGDEF domain NNL22_17430 PF00360 Phytochrome region NNL22_17440 PF00391 PEP-utilising enzyme, mobile domain NNL22_17440 PF05524 PEP-utilising enzyme, N-terminal NNL22_17440 PF02896 PEP-utilising enzyme, TIM barrel domain NNL22_17440 PF01590 GAF domain NNL22_17445 PF00291 Pyridoxal-phosphate dependent enzyme NNL22_17450 PF03372 Endonuclease/Exonuclease/phosphatase family NNL22_17455 PF01554 MatE NNL22_17465 PF05552 Conserved TM helix NNL22_17465 PF00924 Mechanosensitive ion channel NNL22_17470 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_17470 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NNL22_17485 PF00106 short chain dehydrogenase NNL22_17490 PF12034 Domain of unknown function (DUF3520) NNL22_17490 PF00092 von Willebrand factor type A domain NNL22_17490 PF12450 von Willebrand factor NNL22_17505 PF00989 PAS fold NNL22_17505 PF13493 Domain of unknown function (DUF4118) NNL22_17505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_17505 PF00512 His Kinase A (phospho-acceptor) domain NNL22_17505 PF08447 PAS fold NNL22_17505 PF13426 PAS domain NNL22_17510 PF00698 Acyl transferase domain NNL22_17510 PF08240 Alcohol dehydrogenase GroES-like domain NNL22_17510 PF16197 Ketoacyl-synthetase C-terminal extension NNL22_17510 PF02801 Beta-ketoacyl synthase, C-terminal domain NNL22_17510 PF08659 KR domain NNL22_17510 PF00550 Phosphopantetheine attachment site NNL22_17510 PF14765 Polyketide synthase dehydratase NNL22_17510 PF00109 Beta-ketoacyl synthase, N-terminal domain NNL22_17520 PF01914 MarC family integral membrane protein NNL22_17530 PF00012 Hsp70 protein NNL22_17545 PF02321 Outer membrane efflux protein NNL22_17550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NNL22_17555 PF00873 AcrB/AcrD/AcrF family NNL22_17560 PF07730 Histidine kinase NNL22_17560 PF05231 MASE1 NNL22_17560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_17565 PF00072 Response regulator receiver domain NNL22_17565 PF00196 Bacterial regulatory proteins, luxR family NNL22_17575 PF00491 Arginase family NNL22_17595 PF02805 Metal binding domain of Ada NNL22_17595 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NNL22_17595 PF12833 Helix-turn-helix domain NNL22_17595 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NNL22_17600 PF00011 Hsp20/alpha crystallin family NNL22_17605 PF00005 ABC transporter NNL22_17610 PF01032 FecCD transport family NNL22_17620 PF02472 Biopolymer transport protein ExbD/TolR NNL22_17625 PF01618 MotA/TolQ/ExbB proton channel family NNL22_17630 PF03544 Gram-negative bacterial TonB protein C-terminal NNL22_17635 PF07715 TonB-dependent Receptor Plug Domain NNL22_17635 PF00593 TonB dependent receptor NNL22_17645 PF01243 Pyridoxamine 5'-phosphate oxidase NNL22_17655 PF00487 Fatty acid desaturase NNL22_17660 PF00111 2Fe-2S iron-sulfur cluster binding domain NNL22_17660 PF00175 Oxidoreductase NAD-binding domain NNL22_17660 PF00970 Oxidoreductase FAD-binding domain NNL22_17665 PF00202 Aminotransferase class-III NNL22_17670 PF00578 AhpC/TSA family NNL22_17690 PF00196 Bacterial regulatory proteins, luxR family NNL22_17690 PF17874 MalT-like TPR region NNL22_17700 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NNL22_17705 PF02080 TrkA-C domain NNL22_17705 PF03600 Citrate transporter NNL22_17730 PF07690 Major Facilitator Superfamily NNL22_17765 PF01590 GAF domain NNL22_17765 PF00158 Sigma-54 interaction domain NNL22_17770 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NNL22_17770 PF13746 4Fe-4S dicluster domain NNL22_17770 PF12801 4Fe-4S binding domain NNL22_17785 PF01810 LysE type translocator NNL22_17790 PF00012 Hsp70 protein NNL22_17795 PF00012 Hsp70 protein NNL22_17810 PF04244 Deoxyribodipyrimidine photo-lyase-related protein NNL22_17815 PF00255 Glutathione peroxidase NNL22_17835 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_17845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_17845 PF03466 LysR substrate binding domain NNL22_17850 PF00175 Oxidoreductase NAD-binding domain NNL22_17850 PF00970 Oxidoreductase FAD-binding domain NNL22_17855 PF12833 Helix-turn-helix domain NNL22_17860 PF00743 Flavin-binding monooxygenase-like NNL22_17865 PF00561 alpha/beta hydrolase fold NNL22_17895 PF01810 LysE type translocator NNL22_17900 PF03466 LysR substrate binding domain NNL22_17900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NNL22_17905 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NNL22_17905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NNL22_17910 PF02567 Phenazine biosynthesis-like protein NNL22_17915 PF04073 Aminoacyl-tRNA editing domain NNL22_17920 PF01814 Hemerythrin HHE cation binding domain NNL22_17940 PF13244 Domain of unknown function (DUF4040) NNL22_17940 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NNL22_17940 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NNL22_17940 PF00361 Proton-conducting membrane transporter NNL22_17945 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NNL22_17950 PF00361 Proton-conducting membrane transporter NNL22_17955 PF01899 Na+/H+ ion antiporter subunit NNL22_17960 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NNL22_17965 PF03334 Na+/H+ antiporter subunit NNL22_17985 PF00672 HAMP domain NNL22_17985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NNL22_17995 PF03606 C4-dicarboxylate anaerobic carrier NNL22_18000 PF00696 Amino acid kinase family NNL22_18005 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NNL22_18005 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NNL22_18015 PF13520 Amino acid permease NNL22_18020 PF02874 ATP synthase alpha/beta family, beta-barrel domain NNL22_18020 PF16886 ATPsynthase alpha/beta subunit N-term extension NNL22_18020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NNL22_18045 PF01813 ATP synthase subunit D NNL22_18050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NNL22_18050 PF02874 ATP synthase alpha/beta family, beta-barrel domain NNL22_18055 PF01545 Cation efflux family NNL22_18065 PF13411 MerR HTH family regulatory protein NNL22_18085 PF00690 Cation transporter/ATPase, N-terminus NNL22_18085 PF00689 Cation transporting ATPase, C-terminus NNL22_18090 PF03600 Citrate transporter NNL22_18095 PF00005 ABC transporter NNL22_18100 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_18125 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NNL22_18125 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NNL22_18130 PF01022 Bacterial regulatory protein, arsR family NNL22_18140 PF00510 Cytochrome c oxidase subunit III NNL22_18175 PF00005 ABC transporter NNL22_18175 PF00664 ABC transporter transmembrane region NNL22_18180 PF03186 CobD/Cbib protein NNL22_18180 PF17113 Regulatory signalling modulator protein AmpE NNL22_18185 PF00155 Aminotransferase class I and II NNL22_18215 PF00072 Response regulator receiver domain NNL22_18215 PF01627 Hpt domain NNL22_18215 PF18415 Histidine kinase receptor ArcB trans-membrane domain NNL22_18215 PF00512 His Kinase A (phospho-acceptor) domain NNL22_18215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NNL22_18215 PF00989 PAS fold NNL22_18225 PF01914 MarC family integral membrane protein NNL22_18240 PF03544 Gram-negative bacterial TonB protein C-terminal NNL22_18245 PF02472 Biopolymer transport protein ExbD/TolR NNL22_18250 PF01618 MotA/TolQ/ExbB proton channel family NNL22_18255 PF01618 MotA/TolQ/ExbB proton channel family NNL22_18265 PF12833 Helix-turn-helix domain NNL22_18265 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NNL22_18270 PF04116 Fatty acid hydroxylase superfamily NNL22_18305 PF00196 Bacterial regulatory proteins, luxR family NNL22_18310 PF07992 Pyridine nucleotide-disulphide oxidoreductase NNL22_18310 PF18113 Rubredoxin binding C-terminal domain NNL22_18315 PF00301 Rubredoxin NNL22_18320 PF00301 Rubredoxin NNL22_18325 PF00487 Fatty acid desaturase NNL22_18330 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NNL22_18335 PF00528 Binding-protein-dependent transport system inner membrane component NNL22_18340 PF00571 CBS domain NNL22_18340 PF00005 ABC transporter NNL22_18380 PF01979 Amidohydrolase family NNL22_18390 PF13657 HipA N-terminal domain NNL22_18390 PF07804 HipA-like C-terminal domain NNL22_18395 PF01381 Helix-turn-helix NNL22_18455 PF00990 Diguanylate cyclase, GGDEF domain NNL22_18455 PF00072 Response regulator receiver domain NNL22_18470 PF07728 AAA domain (dynein-related subfamily) NNL22_18470 PF17863 AAA lid domain NNL22_18470 PF13519 von Willebrand factor type A domain NNL22_18475 PF12557 Cob(I)alamin adenosyltransferase N terminal NNL22_18475 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP NNL22_18480 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NNL22_18480 PF07685 CobB/CobQ-like glutamine amidotransferase domain NNL22_18485 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NNL22_18485 PF07685 CobB/CobQ-like glutamine amidotransferase domain NNL22_18490 PF13386 Cytochrome C biogenesis protein transmembrane region NNL22_18495 PF01888 CbiD NNL22_18500 PF02571 Precorrin-6x reductase CbiJ/CobK NNL22_18505 PF01903 CbiX NNL22_18510 PF02570 Precorrin-8X methylmutase NNL22_18515 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NNL22_18520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NNL22_18530 PF01890 Cobalamin synthesis G C-terminus NNL22_18530 PF11761 Cobalamin biosynthesis central region NNL22_18530 PF11760 Cobalamin synthesis G N-terminal NNL22_18535 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NNL22_18535 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NNL22_18540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NNL22_18545 PF02492 CobW/HypB/UreG, nucleotide-binding domain NNL22_18545 PF07683 Cobalamin synthesis protein cobW C-terminal domain NNL22_18550 PF02514 CobN/Magnesium Chelatase NNL22_18560 PF01464 Transglycosylase SLT domain NNL22_18560 PF00497 Bacterial extracellular solute-binding proteins, family 3 NNL22_18580 PF01740 STAS domain NNL22_18580 PF00916 Sulfate permease family NNL22_18595 PF01380 SIS domain NNL22_18600 PF00132 Bacterial transferase hexapeptide (six repeats) NNL22_18600 PF12804 MobA-like NTP transferase domain NNL22_18605 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NNL22_18605 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NNL22_18610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NNL22_18610 PF02874 ATP synthase alpha/beta family, beta-barrel domain NNL22_18615 PF00231 ATP synthase NNL22_18620 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NNL22_18620 PF00306 ATP synthase alpha/beta chain, C terminal domain NNL22_18620 PF02874 ATP synthase alpha/beta family, beta-barrel domain NNL22_18625 PF00213 ATP synthase delta (OSCP) subunit NNL22_18630 PF00430 ATP synthase B/B' CF(0) NNL22_18635 PF00137 ATP synthase subunit C NNL22_18640 PF00119 ATP synthase A chain NNL22_18645 PF03899 ATP synthase I chain NNL22_18650 PF17762 HTH domain found in ParB protein NNL22_18650 PF02195 ParB-like nuclease domain NNL22_18655 PF13614 AAA domain NNL22_18660 PF02527 rRNA small subunit methyltransferase G NNL22_18665 PF01134 Glucose inhibited division protein A NNL22_18665 PF13932 GidA associated domain NNL22_18670 PF07690 Major Facilitator Superfamily NNL22_18675 PF01613 Flavin reductase like domain NNL22_18675 PF00258 Flavodoxin NNL22_18685 PF01926 50S ribosome-binding GTPase NNL22_18685 PF12631 MnmE helical domain NNL22_18685 PF10396 GTP-binding protein TrmE N-terminus