locus-tag class description NKI27_00005 PF02096 60Kd inner membrane protein NKI27_00005 PF14849 YidC periplasmic domain NKI27_00010 PF01926 50S ribosome-binding GTPase NKI27_00010 PF12631 MnmE helical domain NKI27_00010 PF10396 GTP-binding protein TrmE N-terminus NKI27_00015 PF01613 Flavin reductase like domain NKI27_00015 PF00258 Flavodoxin NKI27_00020 PF07690 Major Facilitator Superfamily NKI27_00025 PF01134 Glucose inhibited division protein A NKI27_00025 PF13932 GidA associated domain NKI27_00030 PF02527 rRNA small subunit methyltransferase G NKI27_00035 PF13614 AAA domain NKI27_00040 PF17762 HTH domain found in ParB protein NKI27_00040 PF02195 ParB-like nuclease domain NKI27_00045 PF03899 ATP synthase I chain NKI27_00050 PF00119 ATP synthase A chain NKI27_00055 PF00137 ATP synthase subunit C NKI27_00060 PF00430 ATP synthase B/B' CF(0) NKI27_00065 PF00213 ATP synthase delta (OSCP) subunit NKI27_00070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NKI27_00070 PF00306 ATP synthase alpha/beta chain, C terminal domain NKI27_00070 PF02874 ATP synthase alpha/beta family, beta-barrel domain NKI27_00075 PF00231 ATP synthase NKI27_00080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NKI27_00080 PF02874 ATP synthase alpha/beta family, beta-barrel domain NKI27_00085 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NKI27_00085 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NKI27_00090 PF00132 Bacterial transferase hexapeptide (six repeats) NKI27_00090 PF12804 MobA-like NTP transferase domain NKI27_00095 PF01380 SIS domain NKI27_00115 PF01740 STAS domain NKI27_00115 PF00916 Sulfate permease family NKI27_00135 PF01464 Transglycosylase SLT domain NKI27_00135 PF00497 Bacterial extracellular solute-binding proteins, family 3 NKI27_00145 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NKI27_00145 PF07685 CobB/CobQ-like glutamine amidotransferase domain NKI27_00185 PF01694 Rhomboid family NKI27_00195 PF01979 Amidohydrolase family NKI27_00210 PF03707 Bacterial signalling protein N terminal repeat NKI27_00210 PF00563 EAL domain NKI27_00210 PF00990 Diguanylate cyclase, GGDEF domain NKI27_00220 PF00487 Fatty acid desaturase NKI27_00225 PF00301 Rubredoxin NKI27_00230 PF00301 Rubredoxin NKI27_00235 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_00235 PF18113 Rubredoxin binding C-terminal domain NKI27_00240 PF00196 Bacterial regulatory proteins, luxR family NKI27_00260 PF00462 Glutaredoxin NKI27_00260 PF08534 Redoxin NKI27_00265 PF10415 Fumarase C C-terminus NKI27_00265 PF00206 Lyase NKI27_00285 PF02028 BCCT, betaine/carnitine/choline family transporter NKI27_00290 PF02525 Flavodoxin-like fold NKI27_00295 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NKI27_00305 PF02661 Fic/DOC family NKI27_00315 PF04116 Fatty acid hydroxylase superfamily NKI27_00320 PF12833 Helix-turn-helix domain NKI27_00320 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NKI27_00330 PF01618 MotA/TolQ/ExbB proton channel family NKI27_00335 PF01618 MotA/TolQ/ExbB proton channel family NKI27_00340 PF02472 Biopolymer transport protein ExbD/TolR NKI27_00345 PF03544 Gram-negative bacterial TonB protein C-terminal NKI27_00355 PF05016 ParE toxin of type II toxin-antitoxin system, parDE NKI27_00360 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH NKI27_00365 PF12848 ABC transporter NKI27_00365 PF16326 ABC transporter C-terminal domain NKI27_00365 PF00005 ABC transporter NKI27_00375 PF01914 MarC family integral membrane protein NKI27_00380 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NKI27_00380 PF00072 Response regulator receiver domain NKI27_00380 PF01627 Hpt domain NKI27_00380 PF00672 HAMP domain NKI27_00380 PF00512 His Kinase A (phospho-acceptor) domain NKI27_00380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_00385 PF00005 ABC transporter NKI27_00395 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_00400 PF07702 UTRA domain NKI27_00400 PF00392 Bacterial regulatory proteins, gntR family NKI27_00405 PF06754 Phosphonate metabolism protein PhnG NKI27_00410 PF05845 Bacterial phosphonate metabolism protein (PhnH) NKI27_00415 PF05861 Bacterial phosphonate metabolism protein (PhnI) NKI27_00420 PF06007 Phosphonate metabolism protein PhnJ NKI27_00425 PF00005 ABC transporter NKI27_00430 PF00005 ABC transporter NKI27_00435 PF07969 Amidohydrolase family NKI27_00445 PF12706 Beta-lactamase superfamily domain NKI27_00455 PF04893 Yip1 domain NKI27_00475 PF08267 Cobalamin-independent synthase, N-terminal domain NKI27_00475 PF01717 Cobalamin-independent synthase, Catalytic domain NKI27_00480 PF03466 LysR substrate binding domain NKI27_00480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_00485 PF03477 ATP cone domain NKI27_00485 PF02867 Ribonucleotide reductase, barrel domain NKI27_00485 PF00317 Ribonucleotide reductase, all-alpha domain NKI27_00490 PF00268 Ribonucleotide reductase, small chain NKI27_00500 PF00664 ABC transporter transmembrane region NKI27_00500 PF00005 ABC transporter NKI27_00510 PF00990 Diguanylate cyclase, GGDEF domain NKI27_00510 PF08448 PAS fold NKI27_00530 PF00510 Cytochrome c oxidase subunit III NKI27_00535 PF01022 Bacterial regulatory protein, arsR family NKI27_00540 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NKI27_00540 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NKI27_00565 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_00570 PF00005 ABC transporter NKI27_00575 PF03600 Citrate transporter NKI27_00585 PF03600 Citrate transporter NKI27_00610 PF12729 Four helix bundle sensory module for signal transduction NKI27_00610 PF00672 HAMP domain NKI27_00610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NKI27_00625 PF03334 Na+/H+ antiporter subunit NKI27_00630 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NKI27_00635 PF01899 Na+/H+ ion antiporter subunit NKI27_00640 PF00361 Proton-conducting membrane transporter NKI27_00645 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NKI27_00650 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NKI27_00650 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NKI27_00650 PF00361 Proton-conducting membrane transporter NKI27_00650 PF13244 Domain of unknown function (DUF4040) NKI27_00665 PF17874 MalT-like TPR region NKI27_00665 PF00196 Bacterial regulatory proteins, luxR family NKI27_00665 PF17874 MalT-like TPR region NKI27_00665 PF00196 Bacterial regulatory proteins, luxR family NKI27_00675 PF00884 Sulfatase NKI27_00685 PF01814 Hemerythrin HHE cation binding domain NKI27_00690 PF04073 Aminoacyl-tRNA editing domain NKI27_00695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NKI27_00695 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NKI27_00700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_00700 PF03466 LysR substrate binding domain NKI27_00705 PF01810 LysE type translocator NKI27_00710 PF03458 UPF0126 domain NKI27_00735 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NKI27_00735 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NKI27_00735 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NKI27_00735 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NKI27_00740 PF01050 Mannose-6-phosphate isomerase NKI27_00740 PF00483 Nucleotidyl transferase NKI27_00745 PF05426 Alginate lyase NKI27_00750 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX NKI27_00750 PF16824 C-terminal carbohydrate-binding module NKI27_00755 PF11182 Alginate O-acetyl transferase AlgF NKI27_00760 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX NKI27_00765 PF03062 MBOAT, membrane-bound O-acyltransferase family NKI27_00770 PF13229 Right handed beta helix region NKI27_00775 PF13372 Alginate export NKI27_00780 PF07238 PilZ domain NKI27_00790 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NKI27_00790 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NKI27_00790 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NKI27_00800 PF00561 alpha/beta hydrolase fold NKI27_00805 PF00743 Flavin-binding monooxygenase-like NKI27_00810 PF12833 Helix-turn-helix domain NKI27_00810 PF02311 AraC-like ligand binding domain NKI27_00820 PF00884 Sulfatase NKI27_00830 PF00970 Oxidoreductase FAD-binding domain NKI27_00830 PF00175 Oxidoreductase NAD-binding domain NKI27_00835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_00835 PF03466 LysR substrate binding domain NKI27_00840 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_00855 PF06039 Malate:quinone oxidoreductase (Mqo) NKI27_00860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_00860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_00860 PF09317 Domain of unknown function (DUF1974) NKI27_00860 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_00875 PF00012 Hsp70 protein NKI27_00880 PF00012 Hsp70 protein NKI27_00885 PF01810 LysE type translocator NKI27_00930 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NKI27_00950 PF00578 AhpC/TSA family NKI27_00955 PF00202 Aminotransferase class-III NKI27_00960 PF00970 Oxidoreductase FAD-binding domain NKI27_00960 PF00042 Globin NKI27_00960 PF00175 Oxidoreductase NAD-binding domain NKI27_00965 PF00487 Fatty acid desaturase NKI27_00975 PF01243 Pyridoxamine 5'-phosphate oxidase NKI27_00985 PF07715 TonB-dependent Receptor Plug Domain NKI27_00985 PF00593 TonB dependent receptor NKI27_00990 PF03544 Gram-negative bacterial TonB protein C-terminal NKI27_00995 PF01618 MotA/TolQ/ExbB proton channel family NKI27_01000 PF02472 Biopolymer transport protein ExbD/TolR NKI27_01010 PF01032 FecCD transport family NKI27_01015 PF00005 ABC transporter NKI27_01030 PF13091 PLD-like domain NKI27_01065 PF00011 Hsp20/alpha crystallin family NKI27_01070 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NKI27_01070 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NKI27_01070 PF12833 Helix-turn-helix domain NKI27_01070 PF02805 Metal binding domain of Ada NKI27_01075 PF00873 AcrB/AcrD/AcrF family NKI27_01085 PF02321 Outer membrane efflux protein NKI27_01090 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NKI27_01090 PF01266 FAD dependent oxidoreductase NKI27_01100 PF00012 Hsp70 protein NKI27_01115 PF00873 AcrB/AcrD/AcrF family NKI27_01130 PF00440 Bacterial regulatory proteins, tetR family NKI27_01135 PF01914 MarC family integral membrane protein NKI27_01155 PF12450 von Willebrand factor NKI27_01155 PF00092 von Willebrand factor type A domain NKI27_01155 PF12034 Domain of unknown function (DUF3520) NKI27_01160 PF00106 short chain dehydrogenase NKI27_01175 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_01175 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NKI27_01180 PF05552 Conserved TM helix NKI27_01180 PF00924 Mechanosensitive ion channel NKI27_01195 PF03372 Endonuclease/Exonuclease/phosphatase family NKI27_01200 PF01590 GAF domain NKI27_01200 PF05524 PEP-utilising enzyme, N-terminal NKI27_01200 PF00391 PEP-utilising enzyme, mobile domain NKI27_01200 PF02896 PEP-utilising enzyme, TIM barrel domain NKI27_01210 PF03707 Bacterial signalling protein N terminal repeat NKI27_01210 PF00990 Diguanylate cyclase, GGDEF domain NKI27_01210 PF00563 EAL domain NKI27_01220 PF08448 PAS fold NKI27_01220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_01220 PF08447 PAS fold NKI27_01260 PF08206 Ribonuclease B OB domain NKI27_01260 PF00575 S1 RNA binding domain NKI27_01260 PF00773 RNB domain NKI27_01260 PF17876 Cold shock domain NKI27_01275 PF00403 Heavy-metal-associated domain NKI27_01280 PF13411 MerR HTH family regulatory protein NKI27_01310 PF03006 Haemolysin-III related NKI27_01315 PF07859 alpha/beta hydrolase fold NKI27_01330 PF01541 GIY-YIG catalytic domain NKI27_01340 PF13380 CoA binding domain NKI27_01345 PF02152 Dihydroneopterin aldolase NKI27_01350 PF01227 GTP cyclohydrolase I NKI27_01360 PF00561 alpha/beta hydrolase fold NKI27_01365 PF02600 Disulfide bond formation protein DsbB NKI27_01370 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ NKI27_01380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NKI27_01380 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NKI27_01395 PF00005 ABC transporter NKI27_01395 PF12848 ABC transporter NKI27_01400 PF02798 Glutathione S-transferase, N-terminal domain NKI27_01405 PF02541 Ppx/GppA phosphatase family NKI27_01410 PF00085 Thioredoxin NKI27_01420 PF03264 NapC/NirT cytochrome c family, N-terminal region NKI27_01425 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) NKI27_01430 PF00384 Molybdopterin oxidoreductase NKI27_01430 PF01568 Molydopterin dinucleotide binding domain NKI27_01430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NKI27_01445 PF00672 HAMP domain NKI27_01445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_01445 PF07730 Histidine kinase NKI27_01445 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NKI27_01450 PF00196 Bacterial regulatory proteins, luxR family NKI27_01450 PF00072 Response regulator receiver domain NKI27_01455 PF12804 MobA-like NTP transferase domain NKI27_01460 PF02391 MoaE protein NKI27_01465 PF02597 ThiS family NKI27_01470 PF03453 MoeA N-terminal region (domain I and II) NKI27_01470 PF00994 Probable molybdopterin binding domain NKI27_01470 PF03454 MoeA C-terminal region (domain IV) NKI27_01475 PF00994 Probable molybdopterin binding domain NKI27_01485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NKI27_01485 PF07498 Rho termination factor, N-terminal domain NKI27_01485 PF07497 Rho termination factor, RNA-binding domain NKI27_01490 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NKI27_01495 PF00970 Oxidoreductase FAD-binding domain NKI27_01495 PF00175 Oxidoreductase NAD-binding domain NKI27_01500 PF07719 Tetratricopeptide repeat NKI27_01500 PF07219 HemY protein N-terminus NKI27_01505 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase NKI27_01510 PF02602 Uroporphyrinogen-III synthase HemD NKI27_01515 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NKI27_01515 PF03900 Porphobilinogen deaminase, C-terminal domain NKI27_01520 PF04397 LytTr DNA-binding domain NKI27_01520 PF00072 Response regulator receiver domain NKI27_01525 PF07694 5TMR of 5TMR-LYT NKI27_01525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_01525 PF06580 Histidine kinase NKI27_01530 PF14698 Argininosuccinate lyase C-terminal NKI27_01530 PF00206 Lyase NKI27_01535 PF07694 5TMR of 5TMR-LYT NKI27_01535 PF00990 Diguanylate cyclase, GGDEF domain NKI27_01540 PF12633 Adenylate cyclase NT domain NKI27_01540 PF01295 Adenylate cyclase, class-I NKI27_01550 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NKI27_01550 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NKI27_01555 PF01678 Diaminopimelate epimerase NKI27_01570 PF00990 Diguanylate cyclase, GGDEF domain NKI27_01575 PF01627 Hpt domain NKI27_01575 PF00072 Response regulator receiver domain NKI27_01575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_01575 PF00512 His Kinase A (phospho-acceptor) domain NKI27_01590 PF00005 ABC transporter NKI27_01595 PF01032 FecCD transport family NKI27_01600 PF01497 Periplasmic binding protein NKI27_01605 PF07715 TonB-dependent Receptor Plug Domain NKI27_01605 PF00593 TonB dependent receptor NKI27_01610 PF13188 PAS domain NKI27_01610 PF00990 Diguanylate cyclase, GGDEF domain NKI27_01610 PF03707 Bacterial signalling protein N terminal repeat NKI27_01610 PF00563 EAL domain NKI27_01620 PF01734 Patatin-like phospholipase NKI27_01635 PF13091 PLD-like domain NKI27_01650 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NKI27_01650 PF00364 Biotin-requiring enzyme NKI27_01650 PF02817 e3 binding domain NKI27_01655 PF02780 Transketolase, C-terminal domain NKI27_01655 PF02779 Transketolase, pyrimidine binding domain NKI27_01660 PF00676 Dehydrogenase E1 component NKI27_01665 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NKI27_01665 PF12833 Helix-turn-helix domain NKI27_01670 PF07244 Surface antigen variable number repeat NKI27_01670 PF17243 POTRA domain TamA domain 1 NKI27_01670 PF01103 Surface antigen NKI27_01675 PF04357 TamB, inner membrane protein subunit of TAM complex NKI27_01720 PF08713 DNA alkylation repair enzyme NKI27_01735 PF02405 Permease MlaE NKI27_01740 PF00005 ABC transporter NKI27_01760 PF01645 Conserved region in glutamate synthase NKI27_01785 PF03315 Serine dehydratase beta chain NKI27_01785 PF03313 Serine dehydratase alpha chain NKI27_01790 PF07859 alpha/beta hydrolase fold NKI27_01795 PF00497 Bacterial extracellular solute-binding proteins, family 3 NKI27_01800 PF00313 'Cold-shock' DNA-binding domain NKI27_01805 PF00924 Mechanosensitive ion channel NKI27_01805 PF05552 Conserved TM helix NKI27_01810 PF10011 Predicted membrane protein (DUF2254) NKI27_01835 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NKI27_01840 PF03551 Transcriptional regulator PadR-like family NKI27_01840 PF10400 Virulence activator alpha C-term NKI27_01845 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_01845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NKI27_01850 PF00580 UvrD/REP helicase N-terminal domain NKI27_01850 PF13361 UvrD-like helicase C-terminal domain NKI27_01855 PF00990 Diguanylate cyclase, GGDEF domain NKI27_01855 PF00563 EAL domain NKI27_01855 PF03707 Bacterial signalling protein N terminal repeat NKI27_01860 PF17674 HHH domain NKI27_01860 PF00575 S1 RNA binding domain NKI27_01860 PF09371 Tex-like protein N-terminal domain NKI27_01860 PF16921 Tex protein YqgF-like domain NKI27_01865 PF04262 Glutamate-cysteine ligase NKI27_01880 PF00672 HAMP domain NKI27_01880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NKI27_01880 PF02743 Cache domain NKI27_01900 PF01553 Acyltransferase NKI27_01910 PF00950 ABC 3 transport family NKI27_01915 PF00005 ABC transporter NKI27_01930 PF01339 CheB methylesterase NKI27_01930 PF00072 Response regulator receiver domain NKI27_01935 PF00072 Response regulator receiver domain NKI27_01935 PF01584 CheW-like domain NKI27_01935 PF01627 Hpt domain NKI27_01935 PF02895 Signal transducing histidine kinase, homodimeric domain NKI27_01935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_01940 PF01739 CheR methyltransferase, SAM binding domain NKI27_01940 PF03705 CheR methyltransferase, all-alpha domain NKI27_01945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NKI27_01945 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NKI27_01950 PF01584 CheW-like domain NKI27_01955 PF00072 Response regulator receiver domain NKI27_01960 PF00072 Response regulator receiver domain NKI27_01965 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NKI27_01965 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NKI27_01975 PF02622 Uncharacterized ACR, COG1678 NKI27_01980 PF03652 Holliday junction resolvase NKI27_01985 PF00156 Phosphoribosyl transferase domain NKI27_01990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NKI27_01990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NKI27_01995 PF01979 Amidohydrolase family NKI27_02000 PF01914 MarC family integral membrane protein NKI27_02005 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) NKI27_02010 PF00216 Bacterial DNA-binding protein NKI27_02035 PF01293 Phosphoenolpyruvate carboxykinase NKI27_02040 PF01430 Hsp33 protein NKI27_02045 PF01479 S4 domain NKI27_02050 PF13419 Haloacid dehalogenase-like hydrolase NKI27_02055 PF00459 Inositol monophosphatase family NKI27_02065 PF06827 Zinc finger found in FPG and IleRS NKI27_02065 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NKI27_02065 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NKI27_02080 PF00005 ABC transporter NKI27_02085 PF18075 FtsX extracellular domain NKI27_02090 PF04542 Sigma-70 region 2 NKI27_02090 PF04545 Sigma-70, region 4 NKI27_02090 PF00140 Sigma-70 factor, region 1.2 NKI27_02095 PF00226 DnaJ domain NKI27_02095 PF05099 Tellurite resistance protein TerB NKI27_02100 PF00072 Response regulator receiver domain NKI27_02100 PF00486 Transcriptional regulatory protein, C terminal NKI27_02105 PF00672 HAMP domain NKI27_02105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_02105 PF18698 Histidine kinase sensor domain NKI27_02105 PF00512 His Kinase A (phospho-acceptor) domain NKI27_02120 PF01272 Transcription elongation factor, GreA/GreB, C-term NKI27_02120 PF03449 Transcription elongation factor, N-terminal NKI27_02150 PF00512 His Kinase A (phospho-acceptor) domain NKI27_02150 PF00672 HAMP domain NKI27_02150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_02155 PF00486 Transcriptional regulatory protein, C terminal NKI27_02155 PF00072 Response regulator receiver domain NKI27_02160 PF17863 AAA lid domain NKI27_02160 PF01078 Magnesium chelatase, subunit ChlI NKI27_02160 PF13519 von Willebrand factor type A domain NKI27_02170 PF00155 Aminotransferase class I and II NKI27_02170 PF00392 Bacterial regulatory proteins, gntR family NKI27_02190 PF00691 OmpA family NKI27_02200 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NKI27_02200 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NKI27_02215 PF01734 Patatin-like phospholipase NKI27_02220 PF00743 Flavin-binding monooxygenase-like NKI27_02230 PF00580 UvrD/REP helicase N-terminal domain NKI27_02230 PF13361 UvrD-like helicase C-terminal domain NKI27_02245 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NKI27_02245 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NKI27_02250 PF00378 Enoyl-CoA hydratase/isomerase NKI27_02255 PF00378 Enoyl-CoA hydratase/isomerase NKI27_02260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_02260 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_02260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_02265 PF00171 Aldehyde dehydrogenase family NKI27_02270 PF02311 AraC-like ligand binding domain NKI27_02270 PF12833 Helix-turn-helix domain NKI27_02275 PF00762 Ferrochelatase NKI27_02285 PF00034 Cytochrome c NKI27_02290 PF11892 Domain of unknown function (DUF3412) NKI27_02290 PF03641 Possible lysine decarboxylase NKI27_02290 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NKI27_02295 PF02568 Thiamine biosynthesis protein (ThiI) NKI27_02295 PF02926 THUMP domain NKI27_02300 PF02909 Tetracyclin repressor-like, C-terminal domain NKI27_02300 PF00440 Bacterial regulatory proteins, tetR family NKI27_02305 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NKI27_02315 PF00732 GMC oxidoreductase NKI27_02315 PF05199 GMC oxidoreductase NKI27_02325 PF00171 Aldehyde dehydrogenase family NKI27_02340 PF00465 Iron-containing alcohol dehydrogenase NKI27_02350 PF00892 EamA-like transporter family NKI27_02355 PF11849 Domain of unknown function (DUF3369) NKI27_02365 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NKI27_02365 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NKI27_02375 PF08240 Alcohol dehydrogenase GroES-like domain NKI27_02375 PF00107 Zinc-binding dehydrogenase NKI27_02380 PF00924 Mechanosensitive ion channel NKI27_02390 PF00120 Glutamine synthetase, catalytic domain NKI27_02395 PF00171 Aldehyde dehydrogenase family NKI27_02400 PF00465 Iron-containing alcohol dehydrogenase NKI27_02405 PF02540 NAD synthase NKI27_02405 PF00958 GMP synthase C terminal domain NKI27_02405 PF00117 Glutamine amidotransferase class-I NKI27_02410 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_02415 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_02420 PF08402 TOBE domain NKI27_02420 PF00005 ABC transporter NKI27_02425 PF13416 Bacterial extracellular solute-binding protein NKI27_02430 PF04237 YjbR NKI27_02435 PF01177 Asp/Glu/Hydantoin racemase NKI27_02440 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NKI27_02445 PF01638 HxlR-like helix-turn-helix NKI27_02450 PF01568 Molydopterin dinucleotide binding domain NKI27_02450 PF00384 Molybdopterin oxidoreductase NKI27_02465 PF00563 EAL domain NKI27_02465 PF00990 Diguanylate cyclase, GGDEF domain NKI27_02465 PF03707 Bacterial signalling protein N terminal repeat NKI27_02470 PF13361 UvrD-like helicase C-terminal domain NKI27_02470 PF00580 UvrD/REP helicase N-terminal domain NKI27_02475 PF03480 Bacterial extracellular solute-binding protein, family 7 NKI27_02490 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NKI27_02490 PF08479 POTRA domain, ShlB-type NKI27_02490 PF17287 POTRA domain NKI27_02495 PF15526 Novel toxin 21 NKI27_02495 PF05860 haemagglutination activity domain NKI27_02495 PF13332 Hemagglutinin repeat NKI27_02495 PF05594 Haemagluttinin repeat NKI27_02495 PF04829 Pre-toxin domain with VENN motif NKI27_02500 PF13332 Hemagglutinin repeat NKI27_02500 PF04829 Pre-toxin domain with VENN motif NKI27_02500 PF05860 haemagglutination activity domain NKI27_02530 PF04143 Sulphur transport NKI27_02540 PF00501 AMP-binding enzyme NKI27_02540 PF13193 AMP-binding enzyme C-terminal domain NKI27_02570 PF03707 Bacterial signalling protein N terminal repeat NKI27_02570 PF00563 EAL domain NKI27_02570 PF00990 Diguanylate cyclase, GGDEF domain NKI27_02575 PF00085 Thioredoxin NKI27_02585 PF13409 Glutathione S-transferase, N-terminal domain NKI27_02590 PF01464 Transglycosylase SLT domain NKI27_02590 PF14718 Soluble lytic murein transglycosylase L domain NKI27_02600 PF03006 Haemolysin-III related NKI27_02605 PF00989 PAS fold NKI27_02605 PF16736 Single Cache-like NKI27_02605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_02605 PF00512 His Kinase A (phospho-acceptor) domain NKI27_02610 PF00072 Response regulator receiver domain NKI27_02610 PF00486 Transcriptional regulatory protein, C terminal NKI27_02615 PF16527 Two-component sensor protein CpxA, periplasmic domain NKI27_02615 PF00672 HAMP domain NKI27_02615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_02615 PF00512 His Kinase A (phospho-acceptor) domain NKI27_02620 PF00072 Response regulator receiver domain NKI27_02620 PF00486 Transcriptional regulatory protein, C terminal NKI27_02630 PF00672 HAMP domain NKI27_02630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_02630 PF00512 His Kinase A (phospho-acceptor) domain NKI27_02630 PF01627 Hpt domain NKI27_02630 PF00072 Response regulator receiver domain NKI27_02630 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NKI27_02635 PF00218 Indole-3-glycerol phosphate synthase NKI27_02640 PF00591 Glycosyl transferase family, a/b domain NKI27_02640 PF02885 Glycosyl transferase family, helical bundle domain NKI27_02645 PF00117 Glutamine amidotransferase class-I NKI27_02650 PF04715 Anthranilate synthase component I, N terminal region NKI27_02650 PF00425 chorismate binding enzyme NKI27_02655 PF13419 Haloacid dehalogenase-like hydrolase NKI27_02660 PF00834 Ribulose-phosphate 3 epimerase family NKI27_02670 PF00483 Nucleotidyl transferase NKI27_02675 PF01636 Phosphotransferase enzyme family NKI27_02680 PF04453 LPS transport system D NKI27_02685 PF00639 PPIC-type PPIASE domain NKI27_02685 PF09312 SurA N-terminal domain NKI27_02690 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NKI27_02695 PF00398 Ribosomal RNA adenine dimethylase NKI27_02700 PF00149 Calcineurin-like phosphoesterase NKI27_02705 PF04241 Protein of unknown function (DUF423) NKI27_02710 PF05690 Thiazole biosynthesis protein ThiG NKI27_02710 PF02597 ThiS family NKI27_02715 PF05690 Thiazole biosynthesis protein ThiG NKI27_02720 PF00440 Bacterial regulatory proteins, tetR family NKI27_02735 PF00990 Diguanylate cyclase, GGDEF domain NKI27_02735 PF00072 Response regulator receiver domain NKI27_02740 PF00009 Elongation factor Tu GTP binding domain NKI27_02740 PF03144 Elongation factor Tu domain 2 NKI27_02740 PF00679 Elongation factor G C-terminus NKI27_02740 PF03764 Elongation factor G, domain IV NKI27_02740 PF14492 Elongation Factor G, domain II NKI27_02750 PF00873 AcrB/AcrD/AcrF family NKI27_02755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NKI27_02760 PF01817 Chorismate mutase type II NKI27_02760 PF00800 Prephenate dehydratase NKI27_02780 PF00793 DAHP synthetase I family NKI27_02790 PF08534 Redoxin NKI27_02790 PF00462 Glutaredoxin NKI27_02795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NKI27_02795 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_02800 PF03616 Sodium/glutamate symporter NKI27_02825 PF00892 EamA-like transporter family NKI27_02840 PF01774 UreD urease accessory protein NKI27_02845 PF00547 Urease, gamma subunit NKI27_02850 PF00699 Urease beta subunit NKI27_02855 PF01979 Amidohydrolase family NKI27_02855 PF00449 Urease alpha-subunit, N-terminal domain NKI27_02860 PF05194 UreE urease accessory protein, C-terminal domain NKI27_02860 PF02814 UreE urease accessory protein, N-terminal domain NKI27_02865 PF01730 UreF NKI27_02870 PF02492 CobW/HypB/UreG, nucleotide-binding domain NKI27_02875 PF04955 HupE / UreJ protein NKI27_02880 PF00072 Response regulator receiver domain NKI27_02880 PF00990 Diguanylate cyclase, GGDEF domain NKI27_02885 PF02843 Phosphoribosylglycinamide synthetase, C domain NKI27_02885 PF02844 Phosphoribosylglycinamide synthetase, N domain NKI27_02885 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NKI27_02890 PF01808 AICARFT/IMPCHase bienzyme NKI27_02890 PF02142 MGS-like domain NKI27_02900 PF01207 Dihydrouridine synthase (Dus) NKI27_02915 PF02785 Biotin carboxylase C-terminal domain NKI27_02915 PF00289 Biotin carboxylase, N-terminal domain NKI27_02915 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NKI27_02920 PF00364 Biotin-requiring enzyme NKI27_02925 PF01220 Dehydroquinase class II NKI27_02930 PF00990 Diguanylate cyclase, GGDEF domain NKI27_02930 PF00072 Response regulator receiver domain NKI27_02935 PF03707 Bacterial signalling protein N terminal repeat NKI27_02935 PF00990 Diguanylate cyclase, GGDEF domain NKI27_02935 PF00563 EAL domain NKI27_02945 PF05573 NosL NKI27_02950 PF12679 ABC-2 family transporter protein NKI27_02955 PF00005 ABC transporter NKI27_02960 PF05048 Periplasmic copper-binding protein (NosD) NKI27_02965 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NKI27_02965 PF18793 Nitrous oxide reductase propeller repeat 2 NKI27_02965 PF18764 Nitrous oxide reductase propeller repeat NKI27_02970 PF04205 FMN-binding domain NKI27_02970 PF12801 4Fe-4S binding domain NKI27_02980 PF00719 Inorganic pyrophosphatase NKI27_02985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_02985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_02985 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_02995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_02995 PF00512 His Kinase A (phospho-acceptor) domain NKI27_02995 PF09308 LuxQ, periplasmic NKI27_02995 PF00072 Response regulator receiver domain NKI27_03010 PF03591 AzlC protein NKI27_03040 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NKI27_03045 PF02654 Cobalamin-5-phosphate synthase NKI27_03050 PF07690 Major Facilitator Superfamily NKI27_03055 PF00990 Diguanylate cyclase, GGDEF domain NKI27_03055 PF03707 Bacterial signalling protein N terminal repeat NKI27_03055 PF00563 EAL domain NKI27_03060 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_03060 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NKI27_03065 PF00440 Bacterial regulatory proteins, tetR family NKI27_03065 PF16925 Tetracyclin repressor-like, C-terminal domain NKI27_03070 PF00291 Pyridoxal-phosphate dependent enzyme NKI27_03070 PF00585 C-terminal regulatory domain of Threonine dehydratase NKI27_03080 PF01812 5-formyltetrahydrofolate cyclo-ligase family NKI27_03090 PF05164 Cell division protein ZapA NKI27_03105 PF05195 Aminopeptidase P, N-terminal domain NKI27_03105 PF00557 Metallopeptidase family M24 NKI27_03110 PF01494 FAD binding domain NKI27_03115 PF01494 FAD binding domain NKI27_03125 PF04452 RNA methyltransferase NKI27_03130 PF00902 Sec-independent protein translocase protein (TatC) NKI27_03135 PF02416 mttA/Hcf106 family NKI27_03140 PF02416 mttA/Hcf106 family NKI27_03145 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NKI27_03150 PF01502 Phosphoribosyl-AMP cyclohydrolase NKI27_03155 PF03109 ABC1 family NKI27_03165 PF01209 ubiE/COQ5 methyltransferase family NKI27_03175 PF13193 AMP-binding enzyme C-terminal domain NKI27_03175 PF00501 AMP-binding enzyme NKI27_03185 PF00378 Enoyl-CoA hydratase/isomerase NKI27_03225 PF00700 Bacterial flagellin C-terminal helical region NKI27_03225 PF00669 Bacterial flagellin N-terminal helical region NKI27_03230 PF03435 Saccharopine dehydrogenase NADP binding domain NKI27_03235 PF00990 Diguanylate cyclase, GGDEF domain NKI27_03260 PF00487 Fatty acid desaturase NKI27_03265 PF00175 Oxidoreductase NAD-binding domain NKI27_03265 PF00111 2Fe-2S iron-sulfur cluster binding domain NKI27_03265 PF00970 Oxidoreductase FAD-binding domain NKI27_03270 PF00440 Bacterial regulatory proteins, tetR family NKI27_03280 PF03069 Acetamidase/Formamidase family NKI27_03285 PF00005 ABC transporter NKI27_03290 PF00005 ABC transporter NKI27_03290 PF12399 Branched-chain amino acid ATP-binding cassette transporter NKI27_03310 PF00072 Response regulator receiver domain NKI27_03310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_03310 PF00512 His Kinase A (phospho-acceptor) domain NKI27_03310 PF18415 Histidine kinase receptor ArcB trans-membrane domain NKI27_03310 PF01627 Hpt domain NKI27_03310 PF00989 PAS fold NKI27_03315 PF00072 Response regulator receiver domain NKI27_03315 PF00486 Transcriptional regulatory protein, C terminal NKI27_03325 PF16124 RecQ zinc-binding NKI27_03325 PF09382 RQC domain NKI27_03325 PF00570 HRDC domain NKI27_03325 PF00271 Helicase conserved C-terminal domain NKI27_03325 PF00270 DEAD/DEAH box helicase NKI27_03330 PF17151 Periplasmic sensor domain NKI27_03330 PF00990 Diguanylate cyclase, GGDEF domain NKI27_03335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_03335 PF00512 His Kinase A (phospho-acceptor) domain NKI27_03345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_03345 PF00512 His Kinase A (phospho-acceptor) domain NKI27_03355 PF00158 Sigma-54 interaction domain NKI27_03355 PF00072 Response regulator receiver domain NKI27_03375 PF13411 MerR HTH family regulatory protein NKI27_03380 PF08338 Domain of unknown function (DUF1731) NKI27_03380 PF01370 NAD dependent epimerase/dehydratase family NKI27_03390 PF17158 Membrane-associated sensor, integral membrane domain NKI27_03390 PF00990 Diguanylate cyclase, GGDEF domain NKI27_03420 PF00266 Aminotransferase class-V NKI27_03440 PF00271 Helicase conserved C-terminal domain NKI27_03440 PF04851 Type III restriction enzyme, res subunit NKI27_03440 PF02151 UvrB/uvrC motif NKI27_03440 PF17757 UvrB interaction domain NKI27_03440 PF12344 Ultra-violet resistance protein B NKI27_03500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NKI27_03500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NKI27_03505 PF00890 FAD binding domain NKI27_03510 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal NKI27_03510 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal NKI27_03520 PF01668 SmpB protein NKI27_03525 PF00209 Sodium:neurotransmitter symporter family NKI27_03530 PF03364 Polyketide cyclase / dehydrase and lipid transport NKI27_03535 PF03658 RnfH family Ubiquitin NKI27_03540 PF04355 SmpA / OmlA family NKI27_03545 PF01475 Ferric uptake regulator family NKI27_03550 PF02463 RecF/RecN/SMC N terminal domain NKI27_03555 PF01025 GrpE NKI27_03560 PF00012 Hsp70 protein NKI27_03565 PF00684 DnaJ central domain NKI27_03565 PF00226 DnaJ domain NKI27_03565 PF01556 DnaJ C terminal domain NKI27_03570 PF05173 Dihydrodipicolinate reductase, C-terminus NKI27_03570 PF01113 Dihydrodipicolinate reductase, N-terminus NKI27_03575 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NKI27_03575 PF00117 Glutamine amidotransferase class-I NKI27_03580 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NKI27_03580 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NKI27_03580 PF02142 MGS-like domain NKI27_03585 PF01272 Transcription elongation factor, GreA/GreB, C-term NKI27_03585 PF03449 Transcription elongation factor, N-terminal NKI27_03590 PF01985 CRS1 / YhbY (CRM) domain NKI27_03595 PF01728 FtsJ-like methyltransferase NKI27_03600 PF00004 ATPase family associated with various cellular activities (AAA) NKI27_03600 PF17862 AAA+ lid domain NKI27_03600 PF06480 FtsH Extracellular NKI27_03600 PF01434 Peptidase family M41 NKI27_03605 PF00809 Pterin binding enzyme NKI27_03610 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NKI27_03610 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NKI27_03610 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NKI27_03610 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NKI27_03615 PF00121 Triosephosphate isomerase NKI27_03620 PF03840 Preprotein translocase SecG subunit NKI27_03630 PF02576 RimP N-terminal domain NKI27_03630 PF17384 RimP C-terminal SH3 domain NKI27_03635 PF13184 NusA-like KH domain NKI27_03635 PF08529 NusA N-terminal domain NKI27_03635 PF00575 S1 RNA binding domain NKI27_03640 PF04760 Translation initiation factor IF-2, N-terminal region NKI27_03640 PF11987 Translation-initiation factor 2 NKI27_03640 PF00009 Elongation factor Tu GTP binding domain NKI27_03640 PF08364 Bacterial translation initiation factor IF-2 associated region NKI27_03645 PF02033 Ribosome-binding factor A NKI27_03650 PF09157 Pseudouridine synthase II TruB, C-terminal NKI27_03650 PF16198 tRNA pseudouridylate synthase B C-terminal domain NKI27_03650 PF01509 TruB family pseudouridylate synthase (N terminal domain) NKI27_03655 PF00312 Ribosomal protein S15 NKI27_03660 PF00575 S1 RNA binding domain NKI27_03660 PF03725 3' exoribonuclease family, domain 2 NKI27_03660 PF00013 KH domain NKI27_03660 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NKI27_03660 PF01138 3' exoribonuclease family, domain 1 NKI27_03665 PF12146 Serine aminopeptidase, S33 NKI27_03685 PF00005 ABC transporter NKI27_03690 PF00005 ABC transporter NKI27_03690 PF12399 Branched-chain amino acid ATP-binding cassette transporter NKI27_03695 PF02653 Branched-chain amino acid transport system / permease component NKI27_03695 PF11862 Domain of unknown function (DUF3382) NKI27_03700 PF02653 Branched-chain amino acid transport system / permease component NKI27_03705 PF13458 Periplasmic binding protein NKI27_03735 PF17831 Pyruvate dehydrogenase E1 component middle domain NKI27_03735 PF00456 Transketolase, thiamine diphosphate binding domain NKI27_03740 PF00364 Biotin-requiring enzyme NKI27_03740 PF02817 e3 binding domain NKI27_03740 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NKI27_03745 PF00465 Iron-containing alcohol dehydrogenase NKI27_03750 PF01467 Cytidylyltransferase-like NKI27_03760 PF00313 'Cold-shock' DNA-binding domain NKI27_03765 PF06974 Protein of unknown function (DUF1298) NKI27_03765 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NKI27_03785 PF00929 Exonuclease NKI27_03785 PF04851 Type III restriction enzyme, res subunit NKI27_03785 PF13307 Helicase C-terminal domain NKI27_03790 PF03707 Bacterial signalling protein N terminal repeat NKI27_03790 PF00563 EAL domain NKI27_03790 PF00990 Diguanylate cyclase, GGDEF domain NKI27_03800 PF00111 2Fe-2S iron-sulfur cluster binding domain NKI27_03800 PF01799 [2Fe-2S] binding domain NKI27_03805 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NKI27_03830 PF00989 PAS fold NKI27_03830 PF00512 His Kinase A (phospho-acceptor) domain NKI27_03830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_03835 PF00072 Response regulator receiver domain NKI27_03840 PF00563 EAL domain NKI27_03840 PF00990 Diguanylate cyclase, GGDEF domain NKI27_03840 PF03707 Bacterial signalling protein N terminal repeat NKI27_03845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NKI27_03850 PF00575 S1 RNA binding domain NKI27_03850 PF17876 Cold shock domain NKI27_03850 PF08206 Ribonuclease B OB domain NKI27_03850 PF08461 Ribonuclease R winged-helix domain NKI27_03850 PF00773 RNB domain NKI27_03855 PF00588 SpoU rRNA Methylase family NKI27_03855 PF08032 RNA 2'-O ribose methyltransferase substrate binding NKI27_03860 PF01250 Ribosomal protein S6 NKI27_03865 PF01084 Ribosomal protein S18 NKI27_03875 PF01281 Ribosomal protein L9, N-terminal domain NKI27_03875 PF03948 Ribosomal protein L9, C-terminal domain NKI27_03880 PF03796 DnaB-like helicase C terminal domain NKI27_03880 PF00772 DnaB-like helicase N terminal domain NKI27_03885 PF01168 Alanine racemase, N-terminal domain NKI27_03885 PF00842 Alanine racemase, C-terminal domain NKI27_03895 PF00027 Cyclic nucleotide-binding domain NKI27_03895 PF00325 Bacterial regulatory proteins, crp family NKI27_03905 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NKI27_03905 PF03625 Domain of unknown function DUF302 NKI27_03925 PF00563 EAL domain NKI27_03925 PF00990 Diguanylate cyclase, GGDEF domain NKI27_03925 PF03707 Bacterial signalling protein N terminal repeat NKI27_03995 PF00487 Fatty acid desaturase NKI27_04000 PF00111 2Fe-2S iron-sulfur cluster binding domain NKI27_04000 PF00970 Oxidoreductase FAD-binding domain NKI27_04000 PF00175 Oxidoreductase NAD-binding domain NKI27_04005 PF12833 Helix-turn-helix domain NKI27_04005 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NKI27_04010 PF00313 'Cold-shock' DNA-binding domain NKI27_04020 PF18339 RapA N-terminal Tudor like domain 1 NKI27_04020 PF00176 SNF2 family N-terminal domain NKI27_04020 PF12137 RNA polymerase recycling family C-terminal NKI27_04020 PF18337 RapA N-terminal Tudor like domain NKI27_04020 PF00271 Helicase conserved C-terminal domain NKI27_04080 PF00069 Protein kinase domain NKI27_04080 PF03793 PASTA domain NKI27_04105 PF00271 Helicase conserved C-terminal domain NKI27_04105 PF08494 DEAD/H associated NKI27_04105 PF00270 DEAD/DEAH box helicase NKI27_04160 PF01926 50S ribosome-binding GTPase NKI27_04160 PF06071 Protein of unknown function (DUF933) NKI27_04165 PF01195 Peptidyl-tRNA hydrolase NKI27_04170 PF01386 Ribosomal L25p family NKI27_04170 PF14693 Ribosomal protein TL5, C-terminal domain NKI27_04175 PF14572 Phosphoribosyl synthetase-associated domain NKI27_04175 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NKI27_04185 PF08544 GHMP kinases C terminal NKI27_04185 PF00288 GHMP kinases N terminal domain NKI27_04190 PF03550 Outer membrane lipoprotein LolB NKI27_04200 PF01488 Shikimate / quinate 5-dehydrogenase NKI27_04200 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NKI27_04200 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NKI27_04205 PF00472 RF-1 domain NKI27_04205 PF03462 PCRF domain NKI27_04210 PF13847 Methyltransferase domain NKI27_04210 PF17827 PrmC N-terminal domain NKI27_04215 PF00899 ThiF family NKI27_04230 PF03466 LysR substrate binding domain NKI27_04230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_04235 PF13638 PIN domain NKI27_04235 PF02562 PhoH-like protein NKI27_04255 PF03776 Septum formation topological specificity factor MinE NKI27_04260 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NKI27_04265 PF05209 Septum formation inhibitor MinC, N-terminal domain NKI27_04265 PF03775 Septum formation inhibitor MinC, C-terminal domain NKI27_04270 PF11798 IMS family HHH motif NKI27_04270 PF11799 impB/mucB/samB family C-terminal domain NKI27_04270 PF00817 impB/mucB/samB family NKI27_04275 PF00521 DNA gyrase/topoisomerase IV, subunit A NKI27_04275 PF03989 DNA gyrase C-terminal domain, beta-propeller NKI27_04285 PF05231 MASE1 NKI27_04285 PF00563 EAL domain NKI27_04295 PF04055 Radical SAM superfamily NKI27_04300 PF08207 Elongation factor P (EF-P) KOW-like domain NKI27_04300 PF09285 Elongation factor P, C-terminal NKI27_04300 PF01132 Elongation factor P (EF-P) OB domain NKI27_04305 PF00152 tRNA synthetases class II (D, K and N) NKI27_04310 PF02666 Phosphatidylserine decarboxylase NKI27_04315 PF00581 Rhodanese-like domain NKI27_04325 PF01618 MotA/TolQ/ExbB proton channel family NKI27_04330 PF13677 Membrane MotB of proton-channel complex MotA/MotB NKI27_04330 PF00691 OmpA family NKI27_04335 PF03193 RsgA GTPase NKI27_04340 PF00929 Exonuclease NKI27_04345 PF08331 Domain of unknown function (DUF1730) NKI27_04350 PF01256 Carbohydrate kinase NKI27_04350 PF03853 YjeF-related protein N-terminus NKI27_04355 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NKI27_04360 PF11741 AMIN domain NKI27_04360 PF01520 N-acetylmuramoyl-L-alanine amidase NKI27_04365 PF01119 DNA mismatch repair protein, C-terminal domain NKI27_04365 PF08676 MutL C terminal dimerisation domain NKI27_04375 PF17209 Hfq protein NKI27_04380 PF16360 GTP-binding GTPase Middle Region NKI27_04380 PF13167 GTP-binding GTPase N-terminal NKI27_04380 PF01926 50S ribosome-binding GTPase NKI27_04385 PF01145 SPFH domain / Band 7 family NKI27_04385 PF12221 Bacterial membrane protein N terminal NKI27_04390 PF01145 SPFH domain / Band 7 family NKI27_04400 PF13393 Histidyl-tRNA synthetase NKI27_04405 PF00709 Adenylosuccinate synthetase NKI27_04410 PF08003 Protein of unknown function (DUF1698) NKI27_04415 PF13649 Methyltransferase domain NKI27_04430 PF01636 Phosphotransferase enzyme family NKI27_04450 PF01266 FAD dependent oxidoreductase NKI27_04455 PF00202 Aminotransferase class-III NKI27_04460 PF04958 Arginine N-succinyltransferase beta subunit NKI27_04465 PF04958 Arginine N-succinyltransferase beta subunit NKI27_04470 PF00171 Aldehyde dehydrogenase family NKI27_04475 PF04996 Succinylarginine dihydrolase NKI27_04480 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NKI27_04485 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_04490 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_04495 PF00497 Bacterial extracellular solute-binding proteins, family 3 NKI27_04500 PF00005 ABC transporter NKI27_04535 PF04362 Bacterial Fe(2+) trafficking NKI27_04540 PF00360 Phytochrome region NKI27_04540 PF00563 EAL domain NKI27_04540 PF01590 GAF domain NKI27_04540 PF00990 Diguanylate cyclase, GGDEF domain NKI27_04545 PF00730 HhH-GPD superfamily base excision DNA repair protein NKI27_04545 PF14815 NUDIX domain NKI27_04560 PF00475 Imidazoleglycerol-phosphate dehydratase NKI27_04565 PF00117 Glutamine amidotransferase class-I NKI27_04570 PF00977 Histidine biosynthesis protein NKI27_04575 PF00977 Histidine biosynthesis protein NKI27_04585 PF04748 Divergent polysaccharide deacetylase NKI27_04595 PF01551 Peptidase family M23 NKI27_04600 PF01676 Metalloenzyme superfamily NKI27_04600 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NKI27_04605 PF00581 Rhodanese-like domain NKI27_04610 PF00462 Glutaredoxin NKI27_04615 PF02556 Preprotein translocase subunit SecB NKI27_04620 PF00588 SpoU rRNA Methylase family NKI27_04625 PF00108 Thiolase, N-terminal domain NKI27_04625 PF02803 Thiolase, C-terminal domain NKI27_04635 PF01966 HD domain NKI27_04635 PF01743 Poly A polymerase head domain NKI27_04635 PF12627 Probable RNA and SrmB- binding site of polymerase A NKI27_04650 PF08245 Mur ligase middle domain NKI27_04650 PF01225 Mur ligase family, catalytic domain NKI27_04650 PF02875 Mur ligase family, glutamate ligase domain NKI27_04655 PF02441 Flavoprotein NKI27_04660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_04660 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_04660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_04670 PF05199 GMC oxidoreductase NKI27_04675 PF07690 Major Facilitator Superfamily NKI27_04685 PF00860 Permease family NKI27_04690 PF01132 Elongation factor P (EF-P) OB domain NKI27_04690 PF08207 Elongation factor P (EF-P) KOW-like domain NKI27_04690 PF09285 Elongation factor P, C-terminal NKI27_04695 PF12557 Cob(I)alamin adenosyltransferase N terminal NKI27_04695 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP NKI27_04710 PF00210 Ferritin-like domain NKI27_04715 PF00210 Ferritin-like domain NKI27_04725 PF00005 ABC transporter NKI27_04730 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_04750 PF00005 ABC transporter NKI27_04755 PF01032 FecCD transport family NKI27_04770 PF00672 HAMP domain NKI27_04770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_04770 PF00512 His Kinase A (phospho-acceptor) domain NKI27_04770 PF16750 Sensor domain of 2-component histidine kinase NKI27_04775 PF00072 Response regulator receiver domain NKI27_04775 PF00486 Transcriptional regulatory protein, C terminal NKI27_04780 PF07715 TonB-dependent Receptor Plug Domain NKI27_04780 PF00593 TonB dependent receptor NKI27_04785 PF03929 PepSY-associated TM region NKI27_04795 PF03544 Gram-negative bacterial TonB protein C-terminal NKI27_04800 PF02472 Biopolymer transport protein ExbD/TolR NKI27_04805 PF01618 MotA/TolQ/ExbB proton channel family NKI27_04810 PF01618 MotA/TolQ/ExbB proton channel family NKI27_04840 PF00005 ABC transporter NKI27_04845 PF00950 ABC 3 transport family NKI27_04865 PF00258 Flavodoxin NKI27_04875 PF06968 Biotin and Thiamin Synthesis associated domain NKI27_04875 PF04055 Radical SAM superfamily NKI27_04880 PF00155 Aminotransferase class I and II NKI27_04885 PF12697 Alpha/beta hydrolase family NKI27_04885 PF08241 Methyltransferase domain NKI27_04890 PF12697 Alpha/beta hydrolase family NKI27_04890 PF08241 Methyltransferase domain NKI27_04910 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_04910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_04910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_04910 PF12806 Acetyl-CoA dehydrogenase C-terminal like NKI27_04915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_04915 PF12806 Acetyl-CoA dehydrogenase C-terminal like NKI27_04915 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_04915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_04920 PF04231 Endonuclease I NKI27_04925 PF14840 Processivity clamp loader gamma complex DNA pol III C-term NKI27_04925 PF06144 DNA polymerase III, delta subunit NKI27_04935 PF00133 tRNA synthetases class I (I, L, M and V) NKI27_04935 PF08264 Anticodon-binding domain of tRNA NKI27_04935 PF13603 Leucyl-tRNA synthetase, Domain 2 NKI27_04945 PF00795 Carbon-nitrogen hydrolase NKI27_04950 PF00571 CBS domain NKI27_04950 PF03471 Transporter associated domain NKI27_04955 PF02130 Uncharacterized protein family UPF0054 NKI27_04960 PF02562 PhoH-like protein NKI27_04975 PF00588 SpoU rRNA Methylase family NKI27_04975 PF12105 SpoU, rRNA methylase, C-terminal NKI27_04980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_04980 PF03466 LysR substrate binding domain NKI27_04990 PF00107 Zinc-binding dehydrogenase NKI27_04990 PF16884 N-terminal domain of oxidoreductase NKI27_05005 PF03880 DbpA RNA binding domain NKI27_05005 PF00270 DEAD/DEAH box helicase NKI27_05005 PF00271 Helicase conserved C-terminal domain NKI27_05010 PF01554 MatE NKI27_05025 PF00128 Alpha amylase, catalytic domain NKI27_05045 PF04245 37-kD nucleoid-associated bacterial protein NKI27_05050 PF00009 Elongation factor Tu GTP binding domain NKI27_05055 PF01507 Phosphoadenosine phosphosulfate reductase family NKI27_05070 PF04055 Radical SAM superfamily NKI27_05070 PF18693 TRAM domain NKI27_05070 PF00919 Uncharacterized protein family UPF0004 NKI27_05075 PF01648 4'-phosphopantetheinyl transferase superfamily NKI27_05080 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NKI27_05080 PF00072 Response regulator receiver domain NKI27_05080 PF01627 Hpt domain NKI27_05080 PF00512 His Kinase A (phospho-acceptor) domain NKI27_05080 PF00672 HAMP domain NKI27_05080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_05085 PF00291 Pyridoxal-phosphate dependent enzyme NKI27_05090 PF05958 tRNA (Uracil-5-)-methyltransferase NKI27_05095 PF04607 Region found in RelA / SpoT proteins NKI27_05095 PF13291 ACT domain NKI27_05095 PF02824 TGS domain NKI27_05100 PF03819 MazG nucleotide pyrophosphohydrolase domain NKI27_05120 PF08448 PAS fold NKI27_05120 PF00563 EAL domain NKI27_05120 PF00990 Diguanylate cyclase, GGDEF domain NKI27_05125 PF08446 PAS fold NKI27_05125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_05125 PF01590 GAF domain NKI27_05125 PF00360 Phytochrome region NKI27_05125 PF00512 His Kinase A (phospho-acceptor) domain NKI27_05135 PF00311 Phosphoenolpyruvate carboxylase NKI27_05145 PF05191 Adenylate kinase, active site lid NKI27_05150 PF00814 Glycoprotease family NKI27_05155 PF02673 Bacitracin resistance protein BacA NKI27_05165 PF04445 Putative SAM-dependent methyltransferase NKI27_05170 PF01553 Acyltransferase NKI27_05175 PF00005 ABC transporter NKI27_05190 PF01177 Asp/Glu/Hydantoin racemase NKI27_05195 PF00497 Bacterial extracellular solute-binding proteins, family 3 NKI27_05210 PF03707 Bacterial signalling protein N terminal repeat NKI27_05210 PF00990 Diguanylate cyclase, GGDEF domain NKI27_05210 PF00563 EAL domain NKI27_05215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_05215 PF00512 His Kinase A (phospho-acceptor) domain NKI27_05220 PF10609 NUBPL iron-transfer P-loop NTPase NKI27_05235 PF16177 Acetyl-coenzyme A synthetase N-terminus NKI27_05235 PF00501 AMP-binding enzyme NKI27_05235 PF13193 AMP-binding enzyme C-terminal domain NKI27_05240 PF00196 Bacterial regulatory proteins, luxR family NKI27_05240 PF00072 Response regulator receiver domain NKI27_05245 PF00072 Response regulator receiver domain NKI27_05245 PF00990 Diguanylate cyclase, GGDEF domain NKI27_05250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_05250 PF03466 LysR substrate binding domain NKI27_05255 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_05255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_05255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_05285 PF00990 Diguanylate cyclase, GGDEF domain NKI27_05285 PF00563 EAL domain NKI27_05285 PF03707 Bacterial signalling protein N terminal repeat NKI27_05300 PF00072 Response regulator receiver domain NKI27_05300 PF00672 HAMP domain NKI27_05300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_05300 PF00512 His Kinase A (phospho-acceptor) domain NKI27_05300 PF01627 Hpt domain NKI27_05310 PF00474 Sodium:solute symporter family NKI27_05315 PF00589 Phage integrase family NKI27_05315 PF13495 Phage integrase, N-terminal SAM-like domain NKI27_05320 PF02659 Putative manganese efflux pump NKI27_05330 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NKI27_05335 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system NKI27_05350 PF08378 Nuclease-related domain NKI27_05485 PF13817 IS66 C-terminal element NKI27_05485 PF03050 Transposase IS66 family NKI27_05485 PF13007 Transposase C of IS166 homeodomain NKI27_05485 PF13005 zinc-finger binding domain of transposase IS66 NKI27_05555 PF03050 Transposase IS66 family NKI27_05555 PF13817 IS66 C-terminal element NKI27_05555 PF13007 Transposase C of IS166 homeodomain NKI27_05555 PF13005 zinc-finger binding domain of transposase IS66 NKI27_05605 PF02599 Global regulator protein family NKI27_05610 PF04231 Endonuclease I NKI27_05635 PF02661 Fic/DOC family NKI27_05635 PF17841 BID domain of Bartonella effector protein (Bep) NKI27_05785 PF12556 Cobaltochelatase CobS subunit N terminal NKI27_05785 PF08406 CbbQ/NirQ/NorQ C-terminal NKI27_05785 PF07728 AAA domain (dynein-related subfamily) NKI27_05830 PF04002 RadC-like JAB domain NKI27_05855 PF13005 zinc-finger binding domain of transposase IS66 NKI27_05855 PF13817 IS66 C-terminal element NKI27_05855 PF03050 Transposase IS66 family NKI27_05855 PF13007 Transposase C of IS166 homeodomain NKI27_05870 PF02824 TGS domain NKI27_05870 PF04607 Region found in RelA / SpoT proteins NKI27_05870 PF13291 ACT domain NKI27_05935 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like NKI27_05950 PF13007 Transposase C of IS166 homeodomain NKI27_05950 PF03050 Transposase IS66 family NKI27_05950 PF13005 zinc-finger binding domain of transposase IS66 NKI27_05950 PF13817 IS66 C-terminal element NKI27_06020 PF05016 ParE toxin of type II toxin-antitoxin system, parDE NKI27_06070 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NKI27_06075 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system NKI27_06095 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH NKI27_06100 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ NKI27_06125 PF00330 Aconitase family (aconitate hydratase) NKI27_06125 PF00694 Aconitase C-terminal domain NKI27_06130 PF14480 DNA polymerase III polC-type N-terminus I NKI27_06130 PF11490 DNA polymerase III polC-type N-terminus II NKI27_06130 PF07733 Bacterial DNA polymerase III alpha NTPase domain NKI27_06130 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NKI27_06130 PF14579 Helix-hairpin-helix motif NKI27_06130 PF02811 PHP domain NKI27_06130 PF00929 Exonuclease NKI27_06140 PF01713 Smr domain NKI27_06150 PF00596 Class II Aldolase and Adducin N-terminal domain NKI27_06155 PF03079 ARD/ARD' family NKI27_06160 PF13419 Haloacid dehalogenase-like hydrolase NKI27_06175 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NKI27_06205 PF00437 Type II/IV secretion system protein NKI27_06205 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NKI27_06215 PF03358 NADPH-dependent FMN reductase NKI27_06220 PF03960 ArsC family NKI27_06235 PF03738 Glutathionylspermidine synthase preATP-grasp NKI27_06240 PF06693 Protein of unknown function (DUF1190) NKI27_06245 PF03994 Domain of Unknown Function (DUF350) NKI27_06260 PF04012 PspA/IM30 family NKI27_06265 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) NKI27_06285 PF02811 PHP domain NKI27_06285 PF14579 Helix-hairpin-helix motif NKI27_06285 PF01336 OB-fold nucleic acid binding domain NKI27_06285 PF07733 Bacterial DNA polymerase III alpha NTPase domain NKI27_06285 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NKI27_06290 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NKI27_06295 PF11734 TilS substrate C-terminal domain NKI27_06295 PF09179 TilS substrate binding domain NKI27_06295 PF01171 PP-loop family NKI27_06300 PF00117 Glutamine amidotransferase class-I NKI27_06300 PF06418 CTP synthase N-terminus NKI27_06305 PF00793 DAHP synthetase I family NKI27_06310 PF03952 Enolase, N-terminal domain NKI27_06310 PF00113 Enolase, C-terminal TIM barrel domain NKI27_06315 PF04977 Septum formation initiator NKI27_06320 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NKI27_06325 PF02542 YgbB family NKI27_06330 PF01142 tRNA pseudouridine synthase D (TruD) NKI27_06335 PF01975 Survival protein SurE NKI27_06350 PF01476 LysM domain NKI27_06350 PF01551 Peptidase family M23 NKI27_06355 PF00140 Sigma-70 factor, region 1.2 NKI27_06355 PF04539 Sigma-70 region 3 NKI27_06355 PF04542 Sigma-70 region 2 NKI27_06355 PF04545 Sigma-70, region 4 NKI27_06370 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_06375 PF00005 ABC transporter NKI27_06375 PF03459 TOBE domain NKI27_06390 PF10576 Iron-sulfur binding domain of endonuclease III NKI27_06390 PF00633 Helix-hairpin-helix motif NKI27_06390 PF00730 HhH-GPD superfamily base excision DNA repair protein NKI27_06395 PF02508 Rnf-Nqr subunit, membrane protein NKI27_06400 PF04205 FMN-binding domain NKI27_06405 PF03116 NQR2, RnfD, RnfE family NKI27_06410 PF13375 RnfC Barrel sandwich hybrid domain NKI27_06410 PF13237 4Fe-4S dicluster domain NKI27_06410 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NKI27_06410 PF10531 SLBB domain NKI27_06415 PF04060 Putative Fe-S cluster NKI27_06420 PF02508 Rnf-Nqr subunit, membrane protein NKI27_06425 PF09334 tRNA synthetases class I (M) NKI27_06425 PF01588 Putative tRNA binding domain NKI27_06430 PF10609 NUBPL iron-transfer P-loop NTPase NKI27_06435 PF00403 Heavy-metal-associated domain NKI27_06440 PF00034 Cytochrome c NKI27_06450 PF00115 Cytochrome C and Quinol oxidase polypeptide I NKI27_06460 PF03649 Uncharacterised protein family (UPF0014) NKI27_06465 PF00005 ABC transporter NKI27_06470 PF00692 dUTPase NKI27_06475 PF07690 Major Facilitator Superfamily NKI27_06480 PF00596 Class II Aldolase and Adducin N-terminal domain NKI27_06490 PF00155 Aminotransferase class I and II NKI27_06495 PF00990 Diguanylate cyclase, GGDEF domain NKI27_06500 PF01209 ubiE/COQ5 methyltransferase family NKI27_06505 PF01263 Aldose 1-epimerase NKI27_06510 PF01554 MatE NKI27_06515 PF00563 EAL domain NKI27_06515 PF08668 HDOD domain NKI27_06525 PF00581 Rhodanese-like domain NKI27_06525 PF17773 UPF0176 acylphosphatase like domain NKI27_06535 PF13188 PAS domain NKI27_06535 PF08448 PAS fold NKI27_06535 PF00072 Response regulator receiver domain NKI27_06535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_06535 PF00512 His Kinase A (phospho-acceptor) domain NKI27_06540 PF00072 Response regulator receiver domain NKI27_06540 PF08448 PAS fold NKI27_06540 PF00512 His Kinase A (phospho-acceptor) domain NKI27_06540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_06540 PF13188 PAS domain NKI27_06545 PF02954 Bacterial regulatory protein, Fis family NKI27_06545 PF00072 Response regulator receiver domain NKI27_06545 PF00158 Sigma-54 interaction domain NKI27_06550 PF02954 Bacterial regulatory protein, Fis family NKI27_06550 PF00072 Response regulator receiver domain NKI27_06550 PF00158 Sigma-54 interaction domain NKI27_06555 PF17158 Membrane-associated sensor, integral membrane domain NKI27_06555 PF00990 Diguanylate cyclase, GGDEF domain NKI27_06560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_06560 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_06560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_06565 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_06565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_06565 PF12806 Acetyl-CoA dehydrogenase C-terminal like NKI27_06565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_06580 PF00072 Response regulator receiver domain NKI27_06610 PF00990 Diguanylate cyclase, GGDEF domain NKI27_06615 PF12833 Helix-turn-helix domain NKI27_06620 PF02515 CoA-transferase family III NKI27_06625 PF12852 Cupin NKI27_06625 PF12833 Helix-turn-helix domain NKI27_06635 PF01266 FAD dependent oxidoreductase NKI27_06635 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NKI27_06640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NKI27_06640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NKI27_06645 PF00072 Response regulator receiver domain NKI27_06650 PF04461 Protein of unknown function (DUF520) NKI27_06660 PF07690 Major Facilitator Superfamily NKI27_06665 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NKI27_06675 PF04186 FxsA cytoplasmic membrane protein NKI27_06680 PF00166 Chaperonin 10 Kd subunit NKI27_06685 PF00118 TCP-1/cpn60 chaperonin family NKI27_06700 PF00263 Bacterial type II and III secretion system protein NKI27_06700 PF03958 Bacterial type II/III secretion system short domain NKI27_06705 PF01435 Peptidase family M48 NKI27_06710 PF04011 LemA family NKI27_06715 PF03707 Bacterial signalling protein N terminal repeat NKI27_06715 PF00563 EAL domain NKI27_06715 PF00990 Diguanylate cyclase, GGDEF domain NKI27_06720 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NKI27_06720 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NKI27_06725 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NKI27_06725 PF02222 ATP-grasp domain NKI27_06730 PF00731 AIR carboxylase NKI27_06805 PF01513 ATP-NAD kinase NKI27_06810 PF00149 Calcineurin-like phosphoesterase NKI27_06815 PF01694 Rhomboid family NKI27_06815 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease NKI27_06830 PF01433 Peptidase family M1 domain NKI27_06830 PF11940 Domain of unknown function (DUF3458) Ig-like fold NKI27_06830 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NKI27_06835 PF07044 Protein of unknown function (DUF1329) NKI27_06850 PF16868 NMT1-like family NKI27_06860 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NKI27_06860 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NKI27_06860 PF03129 Anticodon binding domain NKI27_06860 PF02824 TGS domain NKI27_06865 PF00707 Translation initiation factor IF-3, C-terminal domain NKI27_06865 PF05198 Translation initiation factor IF-3, N-terminal domain NKI27_06870 PF01632 Ribosomal protein L35 NKI27_06875 PF00453 Ribosomal protein L20 NKI27_06880 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NKI27_06880 PF01409 tRNA synthetases class II core domain (F) NKI27_06885 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NKI27_06885 PF01588 Putative tRNA binding domain NKI27_06885 PF03147 Ferredoxin-fold anticodon binding domain NKI27_06885 PF03483 B3/4 domain NKI27_06885 PF03484 tRNA synthetase B5 domain NKI27_06890 PF00216 Bacterial DNA-binding protein NKI27_06915 PF03050 Transposase IS66 family NKI27_06915 PF13817 IS66 C-terminal element NKI27_06915 PF13007 Transposase C of IS166 homeodomain NKI27_06915 PF13005 zinc-finger binding domain of transposase IS66 NKI27_06970 PF13519 von Willebrand factor type A domain NKI27_06970 PF17863 AAA lid domain NKI27_06970 PF07728 AAA domain (dynein-related subfamily) NKI27_06975 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP NKI27_06975 PF12557 Cob(I)alamin adenosyltransferase N terminal NKI27_06980 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NKI27_06980 PF07685 CobB/CobQ-like glutamine amidotransferase domain NKI27_06985 PF01888 CbiD NKI27_06990 PF02571 Precorrin-6x reductase CbiJ/CobK NKI27_06995 PF02570 Precorrin-8X methylmutase NKI27_07000 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NKI27_07005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NKI27_07010 PF11761 Cobalamin biosynthesis central region NKI27_07010 PF11760 Cobalamin synthesis G N-terminal NKI27_07010 PF01890 Cobalamin synthesis G C-terminus NKI27_07015 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NKI27_07015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NKI27_07020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NKI27_07030 PF01903 CbiX NKI27_07035 PF02492 CobW/HypB/UreG, nucleotide-binding domain NKI27_07035 PF07683 Cobalamin synthesis protein cobW C-terminal domain NKI27_07040 PF02514 CobN/Magnesium Chelatase NKI27_07045 PF07685 CobB/CobQ-like glutamine amidotransferase domain NKI27_07045 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NKI27_07050 PF03186 CobD/Cbib protein NKI27_07050 PF17113 Regulatory signalling modulator protein AmpE NKI27_07055 PF00155 Aminotransferase class I and II NKI27_07060 PF04955 HupE / UreJ protein NKI27_07065 PF02567 Phenazine biosynthesis-like protein NKI27_07070 PF01817 Chorismate mutase type II NKI27_07080 PF02798 Glutathione S-transferase, N-terminal domain NKI27_07085 PF13438 Domain of unknown function (DUF4113) NKI27_07085 PF00817 impB/mucB/samB family NKI27_07085 PF11799 impB/mucB/samB family C-terminal domain NKI27_07090 PF00717 Peptidase S24-like NKI27_07095 PF09382 RQC domain NKI27_07095 PF16124 RecQ zinc-binding NKI27_07095 PF00570 HRDC domain NKI27_07095 PF00271 Helicase conserved C-terminal domain NKI27_07095 PF00270 DEAD/DEAH box helicase NKI27_07100 PF02646 RmuC family NKI27_07105 PF00990 Diguanylate cyclase, GGDEF domain NKI27_07105 PF00563 EAL domain NKI27_07105 PF08448 PAS fold NKI27_07115 PF07728 AAA domain (dynein-related subfamily) NKI27_07115 PF08406 CbbQ/NirQ/NorQ C-terminal NKI27_07135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NKI27_07135 PF14824 Sirohaem biosynthesis protein central NKI27_07135 PF10414 Sirohaem synthase dimerisation region NKI27_07140 PF13186 Iron-sulfur cluster-binding domain NKI27_07140 PF04055 Radical SAM superfamily NKI27_07145 PF17805 AsnC-like ligand binding domain NKI27_07150 PF13404 AsnC-type helix-turn-helix domain NKI27_07150 PF17805 AsnC-like ligand binding domain NKI27_07155 PF17805 AsnC-like ligand binding domain NKI27_07160 PF17805 AsnC-like ligand binding domain NKI27_07170 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NKI27_07190 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NKI27_07195 PF00034 Cytochrome c NKI27_07200 PF00115 Cytochrome C and Quinol oxidase polypeptide I NKI27_07205 PF00092 von Willebrand factor type A domain NKI27_07210 PF00510 Cytochrome c oxidase subunit III NKI27_07225 PF00753 Metallo-beta-lactamase superfamily NKI27_07225 PF12706 Beta-lactamase superfamily domain NKI27_07230 PF08668 HDOD domain NKI27_07245 PF00155 Aminotransferase class I and II NKI27_07255 PF00294 pfkB family carbohydrate kinase NKI27_07260 PF16736 Single Cache-like NKI27_07260 PF00989 PAS fold NKI27_07260 PF00512 His Kinase A (phospho-acceptor) domain NKI27_07260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_07270 PF00486 Transcriptional regulatory protein, C terminal NKI27_07270 PF00072 Response regulator receiver domain NKI27_07275 PF01131 DNA topoisomerase NKI27_07275 PF01751 Toprim domain NKI27_07280 PF01722 BolA-like protein NKI27_07285 PF01300 Telomere recombination NKI27_07300 PF13438 Domain of unknown function (DUF4113) NKI27_07300 PF00817 impB/mucB/samB family NKI27_07300 PF11798 IMS family HHH motif NKI27_07300 PF11799 impB/mucB/samB family C-terminal domain NKI27_07305 PF00717 Peptidase S24-like NKI27_07350 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NKI27_07360 PF05523 WxcM-like, C-terminal NKI27_07390 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NKI27_07400 PF13193 AMP-binding enzyme C-terminal domain NKI27_07400 PF00501 AMP-binding enzyme NKI27_07405 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NKI27_07405 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NKI27_07410 PF00550 Phosphopantetheine attachment site NKI27_07425 PF00700 Bacterial flagellin C-terminal helical region NKI27_07425 PF00669 Bacterial flagellin N-terminal helical region NKI27_07445 PF07195 Flagellar hook-associated protein 2 C-terminus NKI27_07445 PF02465 Flagellar hook-associated protein 2 N-terminus NKI27_07455 PF00850 Histone deacetylase domain NKI27_07460 PF13380 CoA binding domain NKI27_07460 PF13607 Succinyl-CoA ligase like flavodoxin domain NKI27_07460 PF00583 Acetyltransferase (GNAT) family NKI27_07465 PF04381 Putative exonuclease, RdgC NKI27_07475 PF03883 Peroxide stress protein YaaA NKI27_07500 PF00092 von Willebrand factor type A domain NKI27_07500 PF07584 Aerotolerance regulator N-terminal NKI27_07515 PF01882 Protein of unknown function DUF58 NKI27_07520 PF07726 ATPase family associated with various cellular activities (AAA) NKI27_07520 PF17863 AAA lid domain NKI27_07525 PF05088 Bacterial NAD-glutamate dehydrogenase NKI27_07540 PF03129 Anticodon binding domain NKI27_07540 PF04073 Aminoacyl-tRNA editing domain NKI27_07540 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NKI27_07545 PF13742 OB-fold nucleic acid binding domain NKI27_07545 PF02601 Exonuclease VII, large subunit NKI27_07550 PF00478 IMP dehydrogenase / GMP reductase domain NKI27_07550 PF00571 CBS domain NKI27_07555 PF02540 NAD synthase NKI27_07555 PF00958 GMP synthase C terminal domain NKI27_07555 PF00117 Glutamine amidotransferase class-I NKI27_07560 PF14437 MafB19-like deaminase NKI27_07565 PF01370 NAD dependent epimerase/dehydratase family NKI27_07570 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NKI27_07570 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NKI27_07570 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NKI27_07580 PF00440 Bacterial regulatory proteins, tetR family NKI27_07585 PF01966 HD domain NKI27_07585 PF00072 Response regulator receiver domain NKI27_07595 PF00152 tRNA synthetases class II (D, K and N) NKI27_07595 PF02938 GAD domain NKI27_07595 PF01336 OB-fold nucleic acid binding domain NKI27_07600 PF02075 Crossover junction endodeoxyribonuclease RuvC NKI27_07605 PF01330 RuvA N terminal domain NKI27_07605 PF07499 RuvA, C-terminal domain NKI27_07610 PF17864 RuvB AAA lid domain NKI27_07610 PF05496 Holliday junction DNA helicase RuvB P-loop domain NKI27_07610 PF05491 RuvB C-terminal winged helix domain NKI27_07615 PF03061 Thioesterase superfamily NKI27_07620 PF01618 MotA/TolQ/ExbB proton channel family NKI27_07625 PF02472 Biopolymer transport protein ExbD/TolR NKI27_07635 PF07676 WD40-like Beta Propeller Repeat NKI27_07635 PF04052 TolB amino-terminal domain NKI27_07640 PF00691 OmpA family NKI27_07645 PF13525 Outer membrane lipoprotein NKI27_07645 PF16331 TolA binding protein trimerisation NKI27_07660 PF02445 Quinolinate synthetase A protein NKI27_07665 PF01435 Peptidase family M48 NKI27_07670 PF01206 Sulfurtransferase TusA NKI27_07675 PF01594 AI-2E family transporter NKI27_07685 PF00578 AhpC/TSA family NKI27_07690 PF01842 ACT domain NKI27_07695 PF00701 Dihydrodipicolinate synthetase family NKI27_07705 PF01259 SAICAR synthetase NKI27_07715 PF01370 NAD dependent epimerase/dehydratase family NKI27_07765 PF00271 Helicase conserved C-terminal domain NKI27_07765 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) NKI27_07765 PF08463 EcoEI R protein C-terminal NKI27_07765 PF04851 Type III restriction enzyme, res subunit NKI27_07795 PF18766 SWI2/SNF2 ATPase NKI27_07795 PF11867 Domain of unknown function (DUF3387) NKI27_07795 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NKI27_07805 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system NKI27_07815 PF02384 N-6 DNA Methylase NKI27_07815 PF12161 HsdM N-terminal domain NKI27_07860 PF01541 GIY-YIG catalytic domain NKI27_07865 PF01420 Type I restriction modification DNA specificity domain NKI27_07870 PF02463 RecF/RecN/SMC N terminal domain NKI27_07890 PF06250 YhcG PDDEXK nuclease domain NKI27_07890 PF17761 DUF1016 N-terminal domain NKI27_07940 PF00483 Nucleotidyl transferase NKI27_07950 PF03477 ATP cone domain NKI27_07950 PF02867 Ribonucleotide reductase, barrel domain NKI27_07950 PF00317 Ribonucleotide reductase, all-alpha domain NKI27_07970 PF00873 AcrB/AcrD/AcrF family NKI27_08000 PF00005 ABC transporter NKI27_08005 PF02653 Branched-chain amino acid transport system / permease component NKI27_08025 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_08055 PF00005 ABC transporter NKI27_08060 PF01061 ABC-2 type transporter NKI27_08065 PF14489 QueF-like protein NKI27_08065 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NKI27_08070 PF00211 Adenylate and Guanylate cyclase catalytic domain NKI27_08075 PF00881 Nitroreductase family NKI27_08085 PF00460 Flagella basal body rod protein NKI27_08090 PF00460 Flagella basal body rod protein NKI27_08090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NKI27_08095 PF03963 Flagellar hook capping protein - N-terminal region NKI27_08100 PF07559 Flagellar basal body protein FlaE NKI27_08100 PF00460 Flagella basal body rod protein NKI27_08100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NKI27_08105 PF00460 Flagella basal body rod protein NKI27_08105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NKI27_08110 PF00460 Flagella basal body rod protein NKI27_08110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NKI27_08115 PF02107 Flagellar L-ring protein NKI27_08120 PF02119 Flagellar P-ring protein NKI27_08125 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NKI27_08125 PF10135 Rod binding protein NKI27_08130 PF00460 Flagella basal body rod protein NKI27_08130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NKI27_08135 PF00700 Bacterial flagellin C-terminal helical region NKI27_08135 PF00669 Bacterial flagellin N-terminal helical region NKI27_08145 PF02678 Pirin NKI27_08145 PF17954 Quercetinase C-terminal cupin domain NKI27_08155 PF02678 Pirin NKI27_08155 PF05726 Pirin C-terminal cupin domain NKI27_08160 PF02678 Pirin NKI27_08160 PF05726 Pirin C-terminal cupin domain NKI27_08165 PF02525 Flavodoxin-like fold NKI27_08175 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_08175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NKI27_08185 PF00578 AhpC/TSA family NKI27_08190 PF02547 Queuosine biosynthesis protein NKI27_08195 PF01702 Queuine tRNA-ribosyltransferase NKI27_08200 PF02699 Preprotein translocase subunit NKI27_08205 PF07549 SecD/SecF GG Motif NKI27_08205 PF13721 SecD export protein N-terminal TM region NKI27_08205 PF02355 Protein export membrane protein NKI27_08210 PF07549 SecD/SecF GG Motif NKI27_08210 PF02355 Protein export membrane protein NKI27_08215 PF00459 Inositol monophosphatase family NKI27_08220 PF00588 SpoU rRNA Methylase family NKI27_08225 PF00132 Bacterial transferase hexapeptide (six repeats) NKI27_08230 PF02082 Transcriptional regulator NKI27_08235 PF00266 Aminotransferase class-V NKI27_08240 PF00334 Nucleoside diphosphate kinase NKI27_08245 PF04055 Radical SAM superfamily NKI27_08255 PF13464 Domain of unknown function (DUF4115) NKI27_08260 PF04551 GcpE protein NKI27_08265 PF03129 Anticodon binding domain NKI27_08265 PF13393 Histidyl-tRNA synthetase NKI27_08270 PF09976 Tetratricopeptide repeat-like domain NKI27_08275 PF13360 PQQ-like domain NKI27_08285 PF01515 Phosphate acetyl/butaryl transferase NKI27_08285 PF07085 DRTGG domain NKI27_08290 PF00871 Acetokinase family NKI27_08295 PF03707 Bacterial signalling protein N terminal repeat NKI27_08295 PF00990 Diguanylate cyclase, GGDEF domain NKI27_08295 PF00563 EAL domain NKI27_08300 PF00563 EAL domain NKI27_08300 PF08668 HDOD domain NKI27_08330 PF00072 Response regulator receiver domain NKI27_08330 PF01584 CheW-like domain NKI27_08335 PF03473 MOSC domain NKI27_08335 PF00111 2Fe-2S iron-sulfur cluster binding domain NKI27_08335 PF03476 MOSC N-terminal beta barrel domain NKI27_08345 PF12848 ABC transporter NKI27_08345 PF16326 ABC transporter C-terminal domain NKI27_08345 PF00005 ABC transporter NKI27_08355 PF00582 Universal stress protein family NKI27_08370 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NKI27_08370 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NKI27_08370 PF00378 Enoyl-CoA hydratase/isomerase NKI27_08375 PF02803 Thiolase, C-terminal domain NKI27_08375 PF00108 Thiolase, N-terminal domain NKI27_08385 PF01396 Topoisomerase DNA binding C4 zinc finger NKI27_08385 PF01131 DNA topoisomerase NKI27_08385 PF08272 Topoisomerase I zinc-ribbon-like NKI27_08385 PF01751 Toprim domain NKI27_08390 PF00285 Citrate synthase, C-terminal domain NKI27_08395 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NKI27_08400 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NKI27_08405 PF00890 FAD binding domain NKI27_08405 PF02910 Fumarate reductase flavoprotein C-term NKI27_08410 PF13085 2Fe-2S iron-sulfur cluster binding domain NKI27_08415 PF16870 2-oxoglutarate dehydrogenase C-terminal NKI27_08415 PF02779 Transketolase, pyrimidine binding domain NKI27_08415 PF00676 Dehydrogenase E1 component NKI27_08415 PF16078 2-oxoglutarate dehydrogenase N-terminus NKI27_08420 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NKI27_08420 PF00364 Biotin-requiring enzyme NKI27_08420 PF02817 e3 binding domain NKI27_08425 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_08425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NKI27_08430 PF08442 ATP-grasp domain NKI27_08430 PF00549 CoA-ligase NKI27_08435 PF02629 CoA binding domain NKI27_08435 PF00549 CoA-ligase NKI27_08440 PF00579 tRNA synthetases class I (W and Y) NKI27_08445 PF02616 Segregation and condensation protein ScpA NKI27_08450 PF04079 Segregation and condensation complex subunit ScpB NKI27_08455 PF00849 RNA pseudouridylate synthase NKI27_08455 PF01479 S4 domain NKI27_08460 PF00990 Diguanylate cyclase, GGDEF domain NKI27_08470 PF06470 SMC proteins Flexible Hinge Domain NKI27_08470 PF02463 RecF/RecN/SMC N terminal domain NKI27_08475 PF04354 ZipA, C-terminal FtsZ-binding domain NKI27_08480 PF01653 NAD-dependent DNA ligase adenylation domain NKI27_08480 PF03120 NAD-dependent DNA ligase OB-fold domain NKI27_08480 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NKI27_08480 PF12826 Helix-hairpin-helix motif NKI27_08480 PF00533 BRCA1 C Terminus (BRCT) domain NKI27_08485 PF01266 FAD dependent oxidoreductase NKI27_08485 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NKI27_08490 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NKI27_08495 PF00990 Diguanylate cyclase, GGDEF domain NKI27_08495 PF17158 Membrane-associated sensor, integral membrane domain NKI27_08520 PF00072 Response regulator receiver domain NKI27_08520 PF01584 CheW-like domain NKI27_08525 PF01739 CheR methyltransferase, SAM binding domain NKI27_08525 PF03705 CheR methyltransferase, all-alpha domain NKI27_08535 PF04545 Sigma-70, region 4 NKI27_08535 PF04542 Sigma-70 region 2 NKI27_08540 PF00875 DNA photolyase NKI27_08540 PF03441 FAD binding domain of DNA photolyase NKI27_08585 PF00005 ABC transporter NKI27_08585 PF12848 ABC transporter NKI27_08595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_08595 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_08595 PF12806 Acetyl-CoA dehydrogenase C-terminal like NKI27_08595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_08605 PF07995 Glucose / Sorbosone dehydrogenase NKI27_08615 PF08859 DGC domain NKI27_08625 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NKI27_08645 PF02082 Transcriptional regulator NKI27_08650 PF00970 Oxidoreductase FAD-binding domain NKI27_08650 PF00042 Globin NKI27_08650 PF00175 Oxidoreductase NAD-binding domain NKI27_08655 PF02954 Bacterial regulatory protein, Fis family NKI27_08655 PF00158 Sigma-54 interaction domain NKI27_08655 PF00072 Response regulator receiver domain NKI27_08660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_08660 PF00989 PAS fold NKI27_08660 PF00512 His Kinase A (phospho-acceptor) domain NKI27_08665 PF01654 Cytochrome bd terminal oxidase subunit I NKI27_08670 PF02322 Cytochrome bd terminal oxidase subunit II NKI27_08675 PF00248 Aldo/keto reductase family NKI27_08680 PF12169 DNA polymerase III subunits gamma and tau domain III NKI27_08680 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NKI27_08680 PF12170 DNA polymerase III tau subunit V interacting with alpha NKI27_08680 PF12169 DNA polymerase III subunits gamma and tau domain III NKI27_08680 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NKI27_08680 PF12170 DNA polymerase III tau subunit V interacting with alpha NKI27_08685 PF02575 YbaB/EbfC DNA-binding family NKI27_08690 PF02132 RecR protein NKI27_08690 PF13662 Toprim domain NKI27_08695 PF01612 3'-5' exonuclease NKI27_08695 PF00570 HRDC domain NKI27_08700 PF05166 YcgL domain NKI27_08705 PF03692 Putative zinc- or iron-chelating domain NKI27_08725 PF13230 Glutamine amidotransferases class-II NKI27_08730 PF00291 Pyridoxal-phosphate dependent enzyme NKI27_08735 PF10431 C-terminal, D2-small domain, of ClpB protein NKI27_08735 PF00004 ATPase family associated with various cellular activities (AAA) NKI27_08735 PF07724 AAA domain (Cdc48 subfamily) NKI27_08735 PF17871 AAA lid domain NKI27_08735 PF02861 Clp amino terminal domain, pathogenicity island component NKI27_08770 PF01618 MotA/TolQ/ExbB proton channel family NKI27_08790 PF01575 MaoC like domain NKI27_08795 PF12146 Serine aminopeptidase, S33 NKI27_08800 PF00501 AMP-binding enzyme NKI27_08800 PF13193 AMP-binding enzyme C-terminal domain NKI27_08805 PF00270 DEAD/DEAH box helicase NKI27_08805 PF11898 Domain of unknown function (DUF3418) NKI27_08805 PF04408 Helicase associated domain (HA2) NKI27_08805 PF00271 Helicase conserved C-terminal domain NKI27_08805 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NKI27_08810 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NKI27_08810 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NKI27_08825 PF01471 Putative peptidoglycan binding domain NKI27_08825 PF13401 AAA domain NKI27_08835 PF13307 Helicase C-terminal domain NKI27_08835 PF06733 DEAD_2 NKI27_08840 PF17874 MalT-like TPR region NKI27_08840 PF00196 Bacterial regulatory proteins, luxR family NKI27_08845 PF01925 Sulfite exporter TauE/SafE NKI27_08850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_08850 PF03466 LysR substrate binding domain NKI27_08855 PF01507 Phosphoadenosine phosphosulfate reductase family NKI27_08865 PF00425 chorismate binding enzyme NKI27_08865 PF04715 Anthranilate synthase component I, N terminal region NKI27_08910 PF01841 Transglutaminase-like superfamily NKI27_08910 PF13559 Domain of unknown function (DUF4129) NKI27_08910 PF11992 Domain of unknown function (DUF3488) NKI27_08915 PF09115 DNA polymerase III, delta subunit, C terminal NKI27_08925 PF01026 TatD related DNase NKI27_08930 PF00561 alpha/beta hydrolase fold NKI27_08930 PF08386 TAP-like protein NKI27_08940 PF01734 Patatin-like phospholipase NKI27_08945 PF05175 Methyltransferase small domain NKI27_08950 PF01264 Chorismate synthase NKI27_08955 PF12832 MFS_1 like family NKI27_08965 PF00561 alpha/beta hydrolase fold NKI27_08965 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus NKI27_08970 PF03466 LysR substrate binding domain NKI27_08970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_08975 PF00330 Aconitase family (aconitate hydratase) NKI27_08980 PF00694 Aconitase C-terminal domain NKI27_08985 PF00180 Isocitrate/isopropylmalate dehydrogenase NKI27_08990 PF01118 Semialdehyde dehydrogenase, NAD binding domain NKI27_08990 PF02774 Semialdehyde dehydrogenase, dimerisation domain NKI27_09000 PF01416 tRNA pseudouridine synthase NKI27_09005 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NKI27_09010 PF00291 Pyridoxal-phosphate dependent enzyme NKI27_09015 PF00290 Tryptophan synthase alpha chain NKI27_09020 PF17848 Acetyl-coA carboxylase zinc finger domain NKI27_09020 PF01039 Carboxyl transferase domain NKI27_09025 PF08245 Mur ligase middle domain NKI27_09025 PF02875 Mur ligase family, glutamate ligase domain NKI27_09035 PF02674 Colicin V production protein NKI27_09040 PF00156 Phosphoribosyl transferase domain NKI27_09045 PF01053 Cys/Met metabolism PLP-dependent enzyme NKI27_09050 PF17854 FtsK alpha domain NKI27_09050 PF09397 Ftsk gamma domain NKI27_09050 PF01580 FtsK/SpoIIIE family NKI27_09050 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NKI27_09055 PF03548 Outer membrane lipoprotein carrier protein LolA NKI27_09060 PF00004 ATPase family associated with various cellular activities (AAA) NKI27_09060 PF16193 AAA C-terminal domain NKI27_09060 PF12002 MgsA AAA+ ATPase C terminal NKI27_09065 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NKI27_09070 PF02403 Seryl-tRNA synthetase N-terminal domain NKI27_09070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NKI27_09075 PF10414 Sirohaem synthase dimerisation region NKI27_09075 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NKI27_09080 PF00793 DAHP synthetase I family NKI27_09100 PF12697 Alpha/beta hydrolase family NKI27_09110 PF00005 ABC transporter NKI27_09110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NKI27_09115 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_09115 PF12911 N-terminal TM domain of oligopeptide transport permease C NKI27_09120 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_09125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NKI27_09130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NKI27_09140 PF01476 LysM domain NKI27_09140 PF01464 Transglycosylase SLT domain NKI27_09145 PF16123 Hydroxyacylglutathione hydrolase C-terminus NKI27_09145 PF00753 Metallo-beta-lactamase superfamily NKI27_09155 PF00929 Exonuclease NKI27_09170 PF01343 Peptidase family S49 NKI27_09170 PF08496 Peptidase family S49 N-terminal NKI27_09185 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NKI27_09185 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NKI27_09190 PF02574 Homocysteine S-methyltransferase NKI27_09190 PF00809 Pterin binding enzyme NKI27_09190 PF02607 B12 binding domain NKI27_09190 PF02310 B12 binding domain NKI27_09190 PF02965 Vitamin B12 dependent methionine synthase, activation domain NKI27_09195 PF01521 Iron-sulphur cluster biosynthesis NKI27_09195 PF01106 NifU-like domain NKI27_09210 PF02885 Glycosyl transferase family, helical bundle domain NKI27_09210 PF00591 Glycosyl transferase family, a/b domain NKI27_09215 PF04358 DsrC like protein NKI27_09220 PF04077 DsrH like protein NKI27_09225 PF02635 DsrE/DsrF-like family NKI27_09230 PF02635 DsrE/DsrF-like family NKI27_09235 PF01027 Inhibitor of apoptosis-promoting Bax1 NKI27_09250 PF00072 Response regulator receiver domain NKI27_09250 PF00196 Bacterial regulatory proteins, luxR family NKI27_09255 PF02151 UvrB/uvrC motif NKI27_09255 PF08459 UvrC Helix-hairpin-helix N-terminal NKI27_09255 PF01541 GIY-YIG catalytic domain NKI27_09260 PF01066 CDP-alcohol phosphatidyltransferase NKI27_09280 PF13356 Arm DNA-binding domain NKI27_09280 PF00589 Phage integrase family NKI27_09290 PF13356 Arm DNA-binding domain NKI27_09290 PF00589 Phage integrase family NKI27_09300 PF13356 Arm DNA-binding domain NKI27_09300 PF00589 Phage integrase family NKI27_09320 PF01695 IstB-like ATP binding protein NKI27_09325 PF00665 Integrase core domain NKI27_09350 PF13356 Arm DNA-binding domain NKI27_09350 PF00589 Phage integrase family NKI27_09370 PF01863 Protein of unknown function DUF45 NKI27_09380 PF00465 Iron-containing alcohol dehydrogenase NKI27_09385 PF00672 HAMP domain NKI27_09385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_09385 PF01627 Hpt domain NKI27_09385 PF00512 His Kinase A (phospho-acceptor) domain NKI27_09385 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NKI27_09385 PF00072 Response regulator receiver domain NKI27_09400 PF01274 Malate synthase NKI27_09410 PF08007 Cupin superfamily protein NKI27_09415 PF00206 Lyase NKI27_09415 PF08328 Adenylosuccinate lyase C-terminal NKI27_09420 PF04356 Protein of unknown function (DUF489) NKI27_09430 PF00293 NUDIX domain NKI27_09435 PF00849 RNA pseudouridylate synthase NKI27_09445 PF02617 ATP-dependent Clp protease adaptor protein ClpS NKI27_09450 PF10431 C-terminal, D2-small domain, of ClpB protein NKI27_09450 PF02861 Clp amino terminal domain, pathogenicity island component NKI27_09450 PF00004 ATPase family associated with various cellular activities (AAA) NKI27_09450 PF17871 AAA lid domain NKI27_09450 PF07724 AAA domain (Cdc48 subfamily) NKI27_09455 PF01176 Translation initiation factor 1A / IF-1 NKI27_09460 PF04377 Arginine-tRNA-protein transferase, C terminus NKI27_09460 PF04376 Arginine-tRNA-protein transferase, N terminus NKI27_09465 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NKI27_09470 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_09475 PF07726 ATPase family associated with various cellular activities (AAA) NKI27_09475 PF17863 AAA lid domain NKI27_09480 PF00795 Carbon-nitrogen hydrolase NKI27_09485 PF04371 Porphyromonas-type peptidyl-arginine deiminase NKI27_09500 PF02687 FtsX-like permease family NKI27_09500 PF12704 MacB-like periplasmic core domain NKI27_09505 PF00005 ABC transporter NKI27_09515 PF13567 Domain of unknown function (DUF4131) NKI27_09515 PF03772 Competence protein NKI27_09515 PF00753 Metallo-beta-lactamase superfamily NKI27_09520 PF01618 MotA/TolQ/ExbB proton channel family NKI27_09525 PF02472 Biopolymer transport protein ExbD/TolR NKI27_09530 PF00005 ABC transporter NKI27_09530 PF00664 ABC transporter transmembrane region NKI27_09535 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NKI27_09540 PF03966 Trm112p-like protein NKI27_09545 PF02348 Cytidylyltransferase NKI27_09550 PF01451 Low molecular weight phosphotyrosine protein phosphatase NKI27_09555 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NKI27_09555 PF01565 FAD binding domain NKI27_09565 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NKI27_09565 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NKI27_09565 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NKI27_09570 PF02397 Bacterial sugar transferase NKI27_09585 PF13614 AAA domain NKI27_09595 PF01522 Polysaccharide deacetylase NKI27_09605 PF00534 Glycosyl transferases group 1 NKI27_09605 PF13439 Glycosyltransferase Family 4 NKI27_09615 PF00535 Glycosyl transferase family 2 NKI27_09620 PF01522 Polysaccharide deacetylase NKI27_09620 PF14883 Hypothetical glycosyl hydrolase family 13 NKI27_09625 PF00534 Glycosyl transferases group 1 NKI27_09625 PF13439 Glycosyltransferase Family 4 NKI27_09650 PF00132 Bacterial transferase hexapeptide (six repeats) NKI27_09665 PF00535 Glycosyl transferase family 2 NKI27_09675 PF00535 Glycosyl transferase family 2 NKI27_09685 PF00535 Glycosyl transferase family 2 NKI27_09685 PF02709 N-terminal domain of galactosyltransferase NKI27_09720 PF02954 Bacterial regulatory protein, Fis family NKI27_09720 PF00158 Sigma-54 interaction domain NKI27_09720 PF00072 Response regulator receiver domain NKI27_09725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_09725 PF00512 His Kinase A (phospho-acceptor) domain NKI27_09730 PF01370 NAD dependent epimerase/dehydratase family NKI27_09735 PF01553 Acyltransferase NKI27_09740 PF00589 Phage integrase family NKI27_09740 PF13356 Arm DNA-binding domain NKI27_09750 PF08681 Protein of unknown function (DUF1778) NKI27_09820 PF13005 zinc-finger binding domain of transposase IS66 NKI27_09820 PF03050 Transposase IS66 family NKI27_09820 PF13817 IS66 C-terminal element NKI27_09820 PF13007 Transposase C of IS166 homeodomain NKI27_09840 PF00239 Resolvase, N terminal domain NKI27_09840 PF02796 Helix-turn-helix domain of resolvase NKI27_09850 PF01483 Proprotein convertase P-domain NKI27_09850 PF00082 Subtilase family NKI27_09895 PF00665 Integrase core domain NKI27_09900 PF01695 IstB-like ATP binding protein NKI27_09970 PF13005 zinc-finger binding domain of transposase IS66 NKI27_09970 PF13007 Transposase C of IS166 homeodomain NKI27_09970 PF13817 IS66 C-terminal element NKI27_09970 PF03050 Transposase IS66 family NKI27_09975 PF12327 FtsZ family, C-terminal domain NKI27_09975 PF00091 Tubulin/FtsZ family, GTPase domain NKI27_10070 PF07728 AAA domain (dynein-related subfamily) NKI27_10070 PF12102 Domain of unknown function (DUF3578) NKI27_10120 PF08361 MAATS-type transcriptional repressor, C-terminal region NKI27_10120 PF00440 Bacterial regulatory proteins, tetR family NKI27_10125 PF03372 Endonuclease/Exonuclease/phosphatase family NKI27_10135 PF00072 Response regulator receiver domain NKI27_10145 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NKI27_10145 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NKI27_10160 PF00266 Aminotransferase class-V NKI27_10180 PF01012 Electron transfer flavoprotein domain NKI27_10185 PF00766 Electron transfer flavoprotein FAD-binding domain NKI27_10185 PF01012 Electron transfer flavoprotein domain NKI27_10190 PF13193 AMP-binding enzyme C-terminal domain NKI27_10190 PF00501 AMP-binding enzyme NKI27_10195 PF00682 HMGL-like NKI27_10200 PF18140 Propionyl-coenzyme A carboxylase BT domain NKI27_10200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NKI27_10200 PF00364 Biotin-requiring enzyme NKI27_10200 PF00289 Biotin carboxylase, N-terminal domain NKI27_10200 PF02785 Biotin carboxylase C-terminal domain NKI27_10205 PF00378 Enoyl-CoA hydratase/isomerase NKI27_10210 PF01039 Carboxyl transferase domain NKI27_10215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_10215 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_10215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_10235 PF00437 Type II/IV secretion system protein NKI27_10240 PF00482 Type II secretion system (T2SS), protein F NKI27_10245 PF07963 Prokaryotic N-terminal methylation motif NKI27_10245 PF08334 Type II secretion system (T2SS), protein G NKI27_10250 PF12019 Type II transport protein GspH NKI27_10250 PF07963 Prokaryotic N-terminal methylation motif NKI27_10255 PF02501 Type II secretion system (T2SS), protein I NKI27_10255 PF07963 Prokaryotic N-terminal methylation motif NKI27_10260 PF11612 Type II secretion system (T2SS), protein J NKI27_10260 PF07963 Prokaryotic N-terminal methylation motif NKI27_10270 PF12693 GspL periplasmic domain NKI27_10270 PF05134 Type II secretion system (T2SS), protein L NKI27_10285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NKI27_10285 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_10290 PF13401 AAA domain NKI27_10290 PF01471 Putative peptidoglycan binding domain NKI27_10375 PF13476 AAA domain NKI27_10380 PF03280 Proteobacterial lipase chaperone protein NKI27_10385 PF00561 alpha/beta hydrolase fold NKI27_10410 PF13091 PLD-like domain NKI27_10410 PF13396 Phospholipase_D-nuclease N-terminal NKI27_10415 PF12697 Alpha/beta hydrolase family NKI27_10430 PF13194 Domain of unknown function (DUF4010) NKI27_10435 PF02627 Carboxymuconolactone decarboxylase family NKI27_10445 PF02254 TrkA-N domain NKI27_10445 PF00999 Sodium/hydrogen exchanger family NKI27_10450 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NKI27_10450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NKI27_10460 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NKI27_10460 PF02885 Glycosyl transferase family, helical bundle domain NKI27_10460 PF00591 Glycosyl transferase family, a/b domain NKI27_10465 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NKI27_10465 PF00753 Metallo-beta-lactamase superfamily NKI27_10465 PF10996 Beta-Casp domain NKI27_10470 PF09363 XFP C-terminal domain NKI27_10470 PF09364 XFP N-terminal domain NKI27_10470 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase NKI27_10500 PF00403 Heavy-metal-associated domain NKI27_10505 PF13411 MerR HTH family regulatory protein NKI27_10520 PF00873 AcrB/AcrD/AcrF family NKI27_10530 PF00529 HlyD membrane-fusion protein of T1SS NKI27_10530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NKI27_10550 PF11412 Disulphide bond corrector protein DsbC NKI27_10550 PF02683 Cytochrome C biogenesis protein transmembrane region NKI27_10550 PF00085 Thioredoxin NKI27_10560 PF01252 Signal peptidase (SPase) II NKI27_10565 PF01545 Cation efflux family NKI27_10570 PF13411 MerR HTH family regulatory protein NKI27_10595 PF00924 Mechanosensitive ion channel NKI27_10605 PF00072 Response regulator receiver domain NKI27_10605 PF01584 CheW-like domain NKI27_10615 PF01926 50S ribosome-binding GTPase NKI27_10615 PF13167 GTP-binding GTPase N-terminal NKI27_10615 PF16360 GTP-binding GTPase Middle Region NKI27_10630 PF00999 Sodium/hydrogen exchanger family NKI27_10630 PF02080 TrkA-C domain NKI27_10630 PF02254 TrkA-N domain NKI27_10635 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NKI27_10655 PF00756 Putative esterase NKI27_10660 PF08240 Alcohol dehydrogenase GroES-like domain NKI27_10660 PF00107 Zinc-binding dehydrogenase NKI27_10665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_10665 PF03466 LysR substrate binding domain NKI27_10670 PF02899 Phage integrase, N-terminal SAM-like domain NKI27_10670 PF00589 Phage integrase family NKI27_10675 PF03448 MgtE intracellular N domain NKI27_10675 PF01769 Divalent cation transporter NKI27_10675 PF00571 CBS domain NKI27_10690 PF00563 EAL domain NKI27_10690 PF08668 HDOD domain NKI27_10695 PF01081 KDPG and KHG aldolase NKI27_10700 PF00920 Dehydratase family NKI27_10705 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NKI27_10710 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NKI27_10710 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NKI27_10715 PF00069 Protein kinase domain NKI27_10715 PF03793 PASTA domain NKI27_10720 PF01226 Formate/nitrite transporter NKI27_10725 PF02560 Cyanate lyase C-terminal domain NKI27_10730 PF01070 FMN-dependent dehydrogenase NKI27_10735 PF18331 PKHD-type hydroxylase C-terminal domain NKI27_10735 PF13640 2OG-Fe(II) oxygenase superfamily NKI27_10740 PF07715 TonB-dependent Receptor Plug Domain NKI27_10740 PF00593 TonB dependent receptor NKI27_10755 PF02472 Biopolymer transport protein ExbD/TolR NKI27_10760 PF01618 MotA/TolQ/ExbB proton channel family NKI27_10770 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_10770 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NKI27_10775 PF00501 AMP-binding enzyme NKI27_10775 PF13193 AMP-binding enzyme C-terminal domain NKI27_10775 PF16177 Acetyl-coenzyme A synthetase N-terminus NKI27_10780 PF00075 RNase H NKI27_10795 PF01131 DNA topoisomerase NKI27_10795 PF01751 Toprim domain NKI27_10810 PF02311 AraC-like ligand binding domain NKI27_10810 PF12833 Helix-turn-helix domain NKI27_10815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_10815 PF12806 Acetyl-CoA dehydrogenase C-terminal like NKI27_10815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_10815 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_10820 PF12697 Alpha/beta hydrolase family NKI27_10825 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NKI27_10825 PF00384 Molybdopterin oxidoreductase NKI27_10825 PF01568 Molydopterin dinucleotide binding domain NKI27_10890 PF01145 SPFH domain / Band 7 family NKI27_10925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_10925 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_10925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_10945 PF08497 Radical SAM N-terminal NKI27_10945 PF04055 Radical SAM superfamily NKI27_10945 PF11842 Domain of unknown function (DUF3362) NKI27_10965 PF03707 Bacterial signalling protein N terminal repeat NKI27_10965 PF00990 Diguanylate cyclase, GGDEF domain NKI27_10965 PF00563 EAL domain NKI27_10980 PF02630 SCO1/SenC NKI27_10995 PF00486 Transcriptional regulatory protein, C terminal NKI27_10995 PF00072 Response regulator receiver domain NKI27_11010 PF13538 UvrD-like helicase C-terminal domain NKI27_11015 PF12705 PD-(D/E)XK nuclease superfamily NKI27_11015 PF00580 UvrD/REP helicase N-terminal domain NKI27_11015 PF13361 UvrD-like helicase C-terminal domain NKI27_11020 PF17946 RecC C-terminal domain NKI27_11035 PF00849 RNA pseudouridylate synthase NKI27_11050 PF07237 Protein of unknown function (DUF1428) NKI27_11060 PF13085 2Fe-2S iron-sulfur cluster binding domain NKI27_11065 PF01047 MarR family NKI27_11070 PF00255 Glutathione peroxidase NKI27_11095 PF00155 Aminotransferase class I and II NKI27_11105 PF10672 S-adenosylmethionine-dependent methyltransferase NKI27_11105 PF17785 PUA-like domain NKI27_11120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NKI27_11120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NKI27_11120 PF11890 Domain of unknown function (DUF3410) NKI27_11125 PF00270 DEAD/DEAH box helicase NKI27_11125 PF00271 Helicase conserved C-terminal domain NKI27_11130 PF04315 Elongation factor P hydroxylase NKI27_11135 PF11412 Disulphide bond corrector protein DsbC NKI27_11135 PF02683 Cytochrome C biogenesis protein transmembrane region NKI27_11140 PF01206 Sulfurtransferase TusA NKI27_11150 PF01728 FtsJ-like methyltransferase NKI27_11150 PF18125 RlmM ferredoxin-like domain NKI27_11155 PF08447 PAS fold NKI27_11155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NKI27_11160 PF00027 Cyclic nucleotide-binding domain NKI27_11160 PF13545 Crp-like helix-turn-helix domain NKI27_11165 PF00115 Cytochrome C and Quinol oxidase polypeptide I NKI27_11180 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NKI27_11180 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP NKI27_11185 PF13746 4Fe-4S dicluster domain NKI27_11185 PF12801 4Fe-4S binding domain NKI27_11185 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NKI27_11195 PF00403 Heavy-metal-associated domain NKI27_11210 PF06969 HemN C-terminal domain NKI27_11210 PF04055 Radical SAM superfamily NKI27_11215 PF00156 Phosphoribosyl transferase domain NKI27_11230 PF01171 PP-loop family NKI27_11235 PF08359 YsiA-like protein, C-terminal region NKI27_11235 PF00440 Bacterial regulatory proteins, tetR family NKI27_11240 PF00226 DnaJ domain NKI27_11240 PF01556 DnaJ C terminal domain NKI27_11240 PF16713 Enriched in aromatic and glycine Residues box NKI27_11270 PF13145 PPIC-type PPIASE domain NKI27_11275 PF00216 Bacterial DNA-binding protein NKI27_11280 PF02190 ATP-dependent protease La (LON) substrate-binding domain NKI27_11280 PF00004 ATPase family associated with various cellular activities (AAA) NKI27_11280 PF05362 Lon protease (S16) C-terminal proteolytic domain NKI27_11285 PF07724 AAA domain (Cdc48 subfamily) NKI27_11285 PF10431 C-terminal, D2-small domain, of ClpB protein NKI27_11285 PF06689 ClpX C4-type zinc finger NKI27_11290 PF00574 Clp protease NKI27_11295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NKI27_11295 PF05698 Bacterial trigger factor protein (TF) C-terminus NKI27_11295 PF05697 Bacterial trigger factor protein (TF) NKI27_11320 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NKI27_11320 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NKI27_11325 PF09190 DALR domain NKI27_11325 PF01406 tRNA synthetases class I (C) catalytic domain NKI27_11330 PF00749 tRNA synthetases class I (E and Q), catalytic domain NKI27_11330 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NKI27_11335 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NKI27_11340 PF12850 Calcineurin-like phosphoesterase superfamily domain NKI27_11345 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NKI27_11350 PF00330 Aconitase family (aconitate hydratase) NKI27_11350 PF06434 Aconitate hydratase 2 N-terminus NKI27_11350 PF11791 Aconitate B N-terminal domain NKI27_11365 PF00698 Acyl transferase domain NKI27_11365 PF08240 Alcohol dehydrogenase GroES-like domain NKI27_11365 PF16197 Ketoacyl-synthetase C-terminal extension NKI27_11365 PF00109 Beta-ketoacyl synthase, N-terminal domain NKI27_11365 PF02801 Beta-ketoacyl synthase, C-terminal domain NKI27_11365 PF08659 KR domain NKI27_11365 PF00550 Phosphopantetheine attachment site NKI27_11365 PF14765 Polyketide synthase dehydratase NKI27_11370 PF03328 HpcH/HpaI aldolase/citrate lyase family NKI27_11380 PF02515 CoA-transferase family III NKI27_11385 PF08240 Alcohol dehydrogenase GroES-like domain NKI27_11385 PF00107 Zinc-binding dehydrogenase NKI27_11390 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_11390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_11390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_11395 PF02310 B12 binding domain NKI27_11395 PF01642 Methylmalonyl-CoA mutase NKI27_11405 PF08240 Alcohol dehydrogenase GroES-like domain NKI27_11405 PF00107 Zinc-binding dehydrogenase NKI27_11415 PF01435 Peptidase family M48 NKI27_11420 PF02223 Thymidylate kinase NKI27_11425 PF02618 YceG-like family NKI27_11430 PF01063 Amino-transferase class IV NKI27_11435 PF00109 Beta-ketoacyl synthase, N-terminal domain NKI27_11435 PF02801 Beta-ketoacyl synthase, C-terminal domain NKI27_11440 PF00550 Phosphopantetheine attachment site NKI27_11450 PF00698 Acyl transferase domain NKI27_11455 PF02504 Fatty acid synthesis protein NKI27_11460 PF01783 Ribosomal L32p protein family NKI27_11465 PF02620 Large ribosomal RNA subunit accumulation protein YceD NKI27_11470 PF02545 Maf-like protein NKI27_11475 PF06965 Na+/H+ antiporter 1 NKI27_11475 PF01343 Peptidase family S49 NKI27_11480 PF13419 Haloacid dehalogenase-like hydrolase NKI27_11485 PF01479 S4 domain NKI27_11485 PF00849 RNA pseudouridylate synthase NKI27_11490 PF12111 Polyribonucleotide phosphorylase C terminal NKI27_11490 PF10150 Ribonuclease E/G family NKI27_11490 PF00575 S1 RNA binding domain NKI27_11500 PF00072 Response regulator receiver domain NKI27_11510 PF02811 PHP domain NKI27_11515 PF03795 YCII-related domain NKI27_11530 PF03737 Aldolase/RraA NKI27_11545 PF00391 PEP-utilising enzyme, mobile domain NKI27_11545 PF02896 PEP-utilising enzyme, TIM barrel domain NKI27_11545 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NKI27_11550 PF03618 Kinase/pyrophosphorylase NKI27_11555 PF05193 Peptidase M16 inactive domain NKI27_11555 PF08367 Peptidase M16C associated NKI27_11555 PF00675 Insulinase (Peptidase family M16) NKI27_11565 PF02142 MGS-like domain NKI27_11580 PF00072 Response regulator receiver domain NKI27_11605 PF00749 tRNA synthetases class I (E and Q), catalytic domain NKI27_11610 PF00753 Metallo-beta-lactamase superfamily NKI27_11615 PF01297 Zinc-uptake complex component A periplasmic NKI27_11625 PF01844 HNH endonuclease NKI27_11630 PF01207 Dihydrouridine synthase (Dus) NKI27_11635 PF00923 Transaldolase/Fructose-6-phosphate aldolase NKI27_11645 PF03009 Glycerophosphoryl diester phosphodiesterase family NKI27_11650 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_11650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NKI27_11655 PF04400 (Na+)-NQR maturation NqrM NKI27_11660 PF02424 ApbE family NKI27_11665 PF00970 Oxidoreductase FAD-binding domain NKI27_11665 PF00111 2Fe-2S iron-sulfur cluster binding domain NKI27_11665 PF00175 Oxidoreductase NAD-binding domain NKI27_11670 PF02508 Rnf-Nqr subunit, membrane protein NKI27_11675 PF02508 Rnf-Nqr subunit, membrane protein NKI27_11680 PF04205 FMN-binding domain NKI27_11685 PF03116 NQR2, RnfD, RnfE family NKI27_11690 PF11973 NQRA C-terminal domain NKI27_11690 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) NKI27_11695 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NKI27_11695 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NKI27_11700 PF02559 CarD-like/TRCF domain NKI27_11700 PF00270 DEAD/DEAH box helicase NKI27_11700 PF00271 Helicase conserved C-terminal domain NKI27_11700 PF03461 TRCF domain NKI27_11700 PF17757 UvrB interaction domain NKI27_11710 PF01048 Phosphorylase superfamily NKI27_11715 PF00924 Mechanosensitive ion channel NKI27_11720 PF00933 Glycosyl hydrolase family 3 N terminal domain NKI27_11735 PF00909 Ammonium Transporter Family NKI27_11745 PF00571 CBS domain NKI27_11745 PF01743 Poly A polymerase head domain NKI27_11750 PF01207 Dihydrouridine synthase (Dus) NKI27_11755 PF00677 Lumazine binding domain NKI27_11760 PF05175 Methyltransferase small domain NKI27_11770 PF09905 DNA-binding protein VF530 NKI27_11775 PF00849 RNA pseudouridylate synthase NKI27_11775 PF01479 S4 domain NKI27_11785 PF00005 ABC transporter NKI27_11790 PF12399 Branched-chain amino acid ATP-binding cassette transporter NKI27_11790 PF00005 ABC transporter NKI27_11800 PF02653 Branched-chain amino acid transport system / permease component NKI27_11815 PF01625 Peptide methionine sulfoxide reductase NKI27_11820 PF03061 Thioesterase superfamily NKI27_11825 PF13847 Methyltransferase domain NKI27_11830 PF05175 Methyltransferase small domain NKI27_11830 PF08468 Methyltransferase small domain N-terminal NKI27_11845 PF00849 RNA pseudouridylate synthase NKI27_11850 PF03109 ABC1 family NKI27_11855 PF00849 RNA pseudouridylate synthase NKI27_11860 PF06974 Protein of unknown function (DUF1298) NKI27_11860 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NKI27_11865 PF14850 DNA-binding domain of Proline dehydrogenase NKI27_11865 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NKI27_11865 PF01619 Proline dehydrogenase NKI27_11865 PF00171 Aldehyde dehydrogenase family NKI27_11870 PF00474 Sodium:solute symporter family NKI27_11875 PF02567 Phenazine biosynthesis-like protein NKI27_11880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NKI27_11895 PF13673 Acetyltransferase (GNAT) domain NKI27_11910 PF04958 Arginine N-succinyltransferase beta subunit NKI27_11915 PF03466 LysR substrate binding domain NKI27_11915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_11920 PF00463 Isocitrate lyase family NKI27_11930 PF00313 'Cold-shock' DNA-binding domain NKI27_11940 PF01914 MarC family integral membrane protein NKI27_11945 PF00202 Aminotransferase class-III NKI27_11950 PF00501 AMP-binding enzyme NKI27_11965 PF05128 Domain of unknown function (DUF697) NKI27_11970 PF04317 YcjX-like family, DUF463 NKI27_11980 PF04973 Nicotinamide mononucleotide transporter NKI27_12020 PF01758 Sodium Bile acid symporter family NKI27_12025 PF03553 Na+/H+ antiporter family NKI27_12025 PF13726 Na+-H+ antiporter family NKI27_12030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_12030 PF03466 LysR substrate binding domain NKI27_12035 PF07681 DoxX NKI27_12040 PF00107 Zinc-binding dehydrogenase NKI27_12040 PF08240 Alcohol dehydrogenase GroES-like domain NKI27_12050 PF01551 Peptidase family M23 NKI27_12090 PF00561 alpha/beta hydrolase fold NKI27_12095 PF02769 AIR synthase related protein, C-terminal domain NKI27_12095 PF00586 AIR synthase related protein, N-terminal domain NKI27_12100 PF00881 Nitroreductase family NKI27_12105 PF02810 SEC-C motif NKI27_12110 PF07690 Major Facilitator Superfamily NKI27_12120 PF01370 NAD dependent epimerase/dehydratase family NKI27_12125 PF13847 Methyltransferase domain NKI27_12130 PF01618 MotA/TolQ/ExbB proton channel family NKI27_12135 PF13677 Membrane MotB of proton-channel complex MotA/MotB NKI27_12135 PF00691 OmpA family NKI27_12140 PF03831 PhnA domain NKI27_12140 PF08274 PhnA Zinc-Ribbon NKI27_12145 PF00005 ABC transporter NKI27_12145 PF00664 ABC transporter transmembrane region NKI27_12150 PF01253 Translation initiation factor SUI1 NKI27_12160 PF00717 Peptidase S24-like NKI27_12160 PF01726 LexA DNA binding domain NKI27_12180 PF07044 Protein of unknown function (DUF1329) NKI27_12185 PF01339 CheB methylesterase NKI27_12185 PF00072 Response regulator receiver domain NKI27_12190 PF00990 Diguanylate cyclase, GGDEF domain NKI27_12190 PF05230 MASE2 domain NKI27_12195 PF04261 Dyp-type peroxidase family NKI27_12200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_12200 PF00183 Hsp90 protein NKI27_12235 PF00072 Response regulator receiver domain NKI27_12235 PF00158 Sigma-54 interaction domain NKI27_12280 PF00873 AcrB/AcrD/AcrF family NKI27_12285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NKI27_12295 PF00005 ABC transporter NKI27_12300 PF13472 GDSL-like Lipase/Acylhydrolase family NKI27_12305 PF00561 alpha/beta hydrolase fold NKI27_12310 PF00582 Universal stress protein family NKI27_12325 PF02127 Aminopeptidase I zinc metalloprotease (M18) NKI27_12340 PF10672 S-adenosylmethionine-dependent methyltransferase NKI27_12340 PF02926 THUMP domain NKI27_12340 PF01170 Putative RNA methylase family UPF0020 NKI27_12345 PF04957 Ribosome modulation factor NKI27_12350 PF01180 Dihydroorotate dehydrogenase NKI27_12360 PF01545 Cation efflux family NKI27_12360 PF16916 Dimerisation domain of Zinc Transporter NKI27_12365 PF12344 Ultra-violet resistance protein B NKI27_12365 PF02151 UvrB/uvrC motif NKI27_12365 PF17757 UvrB interaction domain NKI27_12365 PF00271 Helicase conserved C-terminal domain NKI27_12365 PF04851 Type III restriction enzyme, res subunit NKI27_12370 PF00155 Aminotransferase class I and II NKI27_12380 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NKI27_12385 PF18073 Rubredoxin metal binding domain NKI27_12395 PF00216 Bacterial DNA-binding protein NKI27_12400 PF00575 S1 RNA binding domain NKI27_12405 PF02224 Cytidylate kinase NKI27_12410 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NKI27_12415 PF00155 Aminotransferase class I and II NKI27_12420 PF00800 Prephenate dehydratase NKI27_12420 PF01817 Chorismate mutase type II NKI27_12420 PF01842 ACT domain NKI27_12425 PF00266 Aminotransferase class-V NKI27_12430 PF03989 DNA gyrase C-terminal domain, beta-propeller NKI27_12430 PF00521 DNA gyrase/topoisomerase IV, subunit A NKI27_12435 PF17158 Membrane-associated sensor, integral membrane domain NKI27_12435 PF00990 Diguanylate cyclase, GGDEF domain NKI27_12440 PF00551 Formyl transferase NKI27_12440 PF01842 ACT domain NKI27_12445 PF01329 Pterin 4 alpha carbinolamine dehydratase NKI27_12450 PF05681 Fumarate hydratase (Fumerase) NKI27_12450 PF05683 Fumarase C-terminus NKI27_12465 PF00764 Arginosuccinate synthase NKI27_12470 PF13505 Outer membrane protein beta-barrel domain NKI27_12470 PF00691 OmpA family NKI27_12475 PF01979 Amidohydrolase family NKI27_12480 PF00929 Exonuclease NKI27_12485 PF10417 C-terminal domain of 1-Cys peroxiredoxin NKI27_12485 PF00578 AhpC/TSA family NKI27_12490 PF07516 SecA Wing and Scaffold domain NKI27_12490 PF01043 SecA preprotein cross-linking domain NKI27_12490 PF07517 SecA DEAD-like domain NKI27_12490 PF02810 SEC-C motif NKI27_12500 PF00106 short chain dehydrogenase NKI27_12510 PF00675 Insulinase (Peptidase family M16) NKI27_12510 PF05193 Peptidase M16 inactive domain NKI27_12510 PF16187 Middle or third domain of peptidase_M16 NKI27_12515 PF00929 Exonuclease NKI27_12515 PF08411 Exonuclease C-terminal NKI27_12550 PF02222 ATP-grasp domain NKI27_12560 PF00132 Bacterial transferase hexapeptide (six repeats) NKI27_12570 PF01784 NIF3 (NGG1p interacting factor 3) NKI27_12575 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NKI27_12575 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NKI27_12575 PF02769 AIR synthase related protein, C-terminal domain NKI27_12580 PF01464 Transglycosylase SLT domain NKI27_12580 PF00497 Bacterial extracellular solute-binding proteins, family 3 NKI27_12585 PF02631 RecX family NKI27_12600 PF02803 Thiolase, C-terminal domain NKI27_12600 PF00108 Thiolase, N-terminal domain NKI27_12605 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NKI27_12605 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NKI27_12605 PF00378 Enoyl-CoA hydratase/isomerase NKI27_12610 PF00595 PDZ domain NKI27_12610 PF03572 Peptidase family S41 NKI27_12610 PF11818 C-terminal domain of tail specific protease (DUF3340) NKI27_12610 PF17804 Tail specific protease N-terminal domain NKI27_12625 PF01008 Initiation factor 2 subunit family NKI27_12630 PF01979 Amidohydrolase family NKI27_12640 PF13419 Haloacid dehalogenase-like hydrolase NKI27_12645 PF00106 short chain dehydrogenase NKI27_12655 PF03918 Cytochrome C biogenesis protein NKI27_12660 PF08534 Redoxin NKI27_12665 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NKI27_12665 PF01578 Cytochrome C assembly protein NKI27_12670 PF03100 CcmE NKI27_12680 PF01578 Cytochrome C assembly protein NKI27_12685 PF03379 CcmB protein NKI27_12690 PF00005 ABC transporter NKI27_12705 PF07044 Protein of unknown function (DUF1329) NKI27_12710 PF00990 Diguanylate cyclase, GGDEF domain NKI27_12710 PF01590 GAF domain NKI27_12710 PF00563 EAL domain NKI27_12710 PF00360 Phytochrome region NKI27_12720 PF01584 CheW-like domain NKI27_12730 PF13614 AAA domain NKI27_12735 PF00691 OmpA family NKI27_12735 PF13677 Membrane MotB of proton-channel complex MotA/MotB NKI27_12740 PF01618 MotA/TolQ/ExbB proton channel family NKI27_12745 PF01339 CheB methylesterase NKI27_12745 PF00072 Response regulator receiver domain NKI27_12750 PF01627 Hpt domain NKI27_12750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_12750 PF00072 Response regulator receiver domain NKI27_12750 PF02895 Signal transducing histidine kinase, homodimeric domain NKI27_12750 PF01584 CheW-like domain NKI27_12755 PF04344 Chemotaxis phosphatase, CheZ NKI27_12760 PF00072 Response regulator receiver domain NKI27_12765 PF04542 Sigma-70 region 2 NKI27_12765 PF04539 Sigma-70 region 3 NKI27_12765 PF04545 Sigma-70, region 4 NKI27_12770 PF10609 NUBPL iron-transfer P-loop NTPase NKI27_12775 PF00448 SRP54-type protein, GTPase domain NKI27_12780 PF00771 FHIPEP family NKI27_12785 PF01312 FlhB HrpN YscU SpaS Family NKI27_12790 PF01311 Bacterial export proteins, family 1 NKI27_12795 PF01313 Bacterial export proteins, family 3 NKI27_12800 PF00813 FliP family NKI27_12810 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NKI27_12815 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NKI27_12815 PF02154 Flagellar motor switch protein FliM NKI27_12835 PF00072 Response regulator receiver domain NKI27_12840 PF13466 STAS domain NKI27_12845 PF00072 Response regulator receiver domain NKI27_12845 PF01339 CheB methylesterase NKI27_12850 PF03975 CheD chemotactic sensory transduction NKI27_12855 PF01739 CheR methyltransferase, SAM binding domain NKI27_12855 PF03705 CheR methyltransferase, all-alpha domain NKI27_12860 PF01584 CheW-like domain NKI27_12865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_12865 PF02895 Signal transducing histidine kinase, homodimeric domain NKI27_12865 PF09078 CheY binding NKI27_12865 PF01584 CheW-like domain NKI27_12865 PF01627 Hpt domain NKI27_12870 PF00072 Response regulator receiver domain NKI27_12870 PF00486 Transcriptional regulatory protein, C terminal NKI27_12885 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NKI27_12885 PF18269 T3SS EscN ATPase C-terminal domain NKI27_12895 PF01706 FliG C-terminal domain NKI27_12895 PF14841 FliG middle domain NKI27_12895 PF14842 FliG N-terminal domain NKI27_12900 PF01514 Secretory protein of YscJ/FliF family NKI27_12900 PF08345 Flagellar M-ring protein C-terminal NKI27_12905 PF02049 Flagellar hook-basal body complex protein FliE NKI27_12910 PF00158 Sigma-54 interaction domain NKI27_12910 PF00072 Response regulator receiver domain NKI27_12910 PF02954 Bacterial regulatory protein, Fis family NKI27_12915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_12915 PF00512 His Kinase A (phospho-acceptor) domain NKI27_12915 PF13188 PAS domain NKI27_12920 PF00158 Sigma-54 interaction domain NKI27_12920 PF06490 Flagellar regulatory protein FleQ NKI27_12920 PF02954 Bacterial regulatory protein, Fis family NKI27_12935 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit NKI27_12940 PF02436 Conserved carboxylase domain NKI27_12940 PF00682 HMGL-like NKI27_12940 PF00364 Biotin-requiring enzyme NKI27_12945 PF04277 Oxaloacetate decarboxylase, gamma chain NKI27_12965 PF02599 Global regulator protein family NKI27_12970 PF13840 ACT domain NKI27_12970 PF01842 ACT domain NKI27_12970 PF00696 Amino acid kinase family NKI27_12975 PF02272 DHHA1 domain NKI27_12975 PF01411 tRNA synthetases class II (A) NKI27_12975 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NKI27_12995 PF03739 Lipopolysaccharide export system permease LptF/LptG NKI27_13000 PF03739 Lipopolysaccharide export system permease LptF/LptG NKI27_13005 PF02789 Cytosol aminopeptidase family, N-terminal domain NKI27_13005 PF00883 Cytosol aminopeptidase family, catalytic domain NKI27_13020 PF08264 Anticodon-binding domain of tRNA NKI27_13020 PF00133 tRNA synthetases class I (I, L, M and V) NKI27_13020 PF10458 Valyl tRNA synthetase tRNA binding arm NKI27_13025 PF02558 Ketopantoate reductase PanE/ApbA NKI27_13025 PF08546 Ketopantoate reductase PanE/ApbA C terminal NKI27_13045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NKI27_13045 PF12729 Four helix bundle sensory module for signal transduction NKI27_13045 PF00672 HAMP domain NKI27_13050 PF00480 ROK family NKI27_13055 PF07348 Syd protein (SUKH-2) NKI27_13060 PF17113 Regulatory signalling modulator protein AmpE NKI27_13065 PF01510 N-acetylmuramoyl-L-alanine amidase NKI27_13080 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NKI27_13080 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NKI27_13085 PF00563 EAL domain NKI27_13085 PF00990 Diguanylate cyclase, GGDEF domain NKI27_13085 PF03707 Bacterial signalling protein N terminal repeat NKI27_13100 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family NKI27_13105 PF00308 Bacterial dnaA protein NKI27_13110 PF01066 CDP-alcohol phosphatidyltransferase NKI27_13120 PF00586 AIR synthase related protein, N-terminal domain NKI27_13120 PF02769 AIR synthase related protein, C-terminal domain NKI27_13125 PF00551 Formyl transferase NKI27_13135 PF00270 DEAD/DEAH box helicase NKI27_13135 PF04408 Helicase associated domain (HA2) NKI27_13135 PF00271 Helicase conserved C-terminal domain NKI27_13135 PF08482 ATP-dependent helicase C-terminal NKI27_13150 PF05698 Bacterial trigger factor protein (TF) C-terminus NKI27_13175 PF01553 Acyltransferase NKI27_13205 PF00245 Alkaline phosphatase NKI27_13215 PF05525 Branched-chain amino acid transport protein NKI27_13220 PF00990 Diguanylate cyclase, GGDEF domain NKI27_13220 PF00072 Response regulator receiver domain NKI27_13225 PF12437 Glutamine synthetase type III N terminal NKI27_13225 PF18318 Glutamine synthetase C-terminal domain NKI27_13225 PF00120 Glutamine synthetase, catalytic domain NKI27_13240 PF01272 Transcription elongation factor, GreA/GreB, C-term NKI27_13240 PF14760 Rnk N-terminus NKI27_13255 PF07715 TonB-dependent Receptor Plug Domain NKI27_13255 PF00593 TonB dependent receptor NKI27_13270 PF00990 Diguanylate cyclase, GGDEF domain NKI27_13270 PF00563 EAL domain NKI27_13270 PF03707 Bacterial signalling protein N terminal repeat NKI27_13275 PF00106 short chain dehydrogenase NKI27_13285 PF03167 Uracil DNA glycosylase superfamily NKI27_13290 PF02803 Thiolase, C-terminal domain NKI27_13290 PF00108 Thiolase, N-terminal domain NKI27_13310 PF00583 Acetyltransferase (GNAT) family NKI27_13310 PF00795 Carbon-nitrogen hydrolase NKI27_13315 PF04303 PrpF protein NKI27_13320 PF00694 Aconitase C-terminal domain NKI27_13320 PF00330 Aconitase family (aconitate hydratase) NKI27_13325 PF00285 Citrate synthase, C-terminal domain NKI27_13335 PF07729 FCD domain NKI27_13335 PF00392 Bacterial regulatory proteins, gntR family NKI27_13340 PF12392 Collagenase NKI27_13340 PF01136 Peptidase family U32 NKI27_13350 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NKI27_13350 PF12833 Helix-turn-helix domain NKI27_13365 PF07670 Nucleoside recognition NKI27_13370 PF00512 His Kinase A (phospho-acceptor) domain NKI27_13370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_13370 PF00989 PAS fold NKI27_13375 PF00196 Bacterial regulatory proteins, luxR family NKI27_13375 PF00072 Response regulator receiver domain NKI27_13380 PF01551 Peptidase family M23 NKI27_13390 PF05362 Lon protease (S16) C-terminal proteolytic domain NKI27_13390 PF13654 AAA domain NKI27_13415 PF04247 Invasion gene expression up-regulator, SirB NKI27_13420 PF01136 Peptidase family U32 NKI27_13425 PF01136 Peptidase family U32 NKI27_13430 PF04055 Radical SAM superfamily NKI27_13430 PF16199 Radical_SAM C-terminal domain NKI27_13435 PF02036 SCP-2 sterol transfer family NKI27_13445 PF00550 Phosphopantetheine attachment site NKI27_13450 PF02785 Biotin carboxylase C-terminal domain NKI27_13450 PF00289 Biotin carboxylase, N-terminal domain NKI27_13450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NKI27_13455 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NKI27_13455 PF12241 Trans-2-enoyl-CoA reductase catalytic region NKI27_13455 PF07055 Enoyl reductase FAD binding domain NKI27_13460 PF00109 Beta-ketoacyl synthase, N-terminal domain NKI27_13460 PF02801 Beta-ketoacyl synthase, C-terminal domain NKI27_13465 PF07977 FabA-like domain NKI27_13480 PF00154 recA bacterial DNA recombination protein NKI27_13485 PF05192 MutS domain III NKI27_13485 PF05190 MutS family domain IV NKI27_13485 PF00488 MutS domain V NKI27_13485 PF05188 MutS domain II NKI27_13485 PF01624 MutS domain I NKI27_13490 PF11953 Domain of unknown function (DUF3470) NKI27_13490 PF00037 4Fe-4S binding domain NKI27_13495 PF01351 Ribonuclease HII NKI27_13500 PF02684 Lipid-A-disaccharide synthetase NKI27_13505 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NKI27_13505 PF00132 Bacterial transferase hexapeptide (six repeats) NKI27_13510 PF07977 FabA-like domain NKI27_13515 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NKI27_13515 PF00132 Bacterial transferase hexapeptide (six repeats) NKI27_13525 PF07244 Surface antigen variable number repeat NKI27_13525 PF01103 Surface antigen NKI27_13530 PF02163 Peptidase family M50 NKI27_13530 PF17820 PDZ domain NKI27_13530 PF13180 PDZ domain NKI27_13535 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NKI27_13535 PF13288 DXP reductoisomerase C-terminal domain NKI27_13535 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NKI27_13545 PF01255 Putative undecaprenyl diphosphate synthase NKI27_13550 PF01765 Ribosome recycling factor NKI27_13555 PF00696 Amino acid kinase family NKI27_13560 PF00889 Elongation factor TS NKI27_13565 PF00318 Ribosomal protein S2 NKI27_13570 PF00557 Metallopeptidase family M24 NKI27_13575 PF01842 ACT domain NKI27_13575 PF08335 GlnD PII-uridylyltransferase NKI27_13575 PF01966 HD domain NKI27_13575 PF01909 Nucleotidyltransferase domain NKI27_13580 PF00155 Aminotransferase class I and II NKI27_13585 PF03960 ArsC family NKI27_13590 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle NKI27_13590 PF14602 Hexapeptide repeat of succinyl-transferase NKI27_13595 PF07687 Peptidase dimerisation domain NKI27_13595 PF01546 Peptidase family M20/M25/M40 NKI27_13600 PF13847 Methyltransferase domain NKI27_13615 PF00313 'Cold-shock' DNA-binding domain NKI27_13620 PF04102 SlyX NKI27_13625 PF10431 C-terminal, D2-small domain, of ClpB protein NKI27_13625 PF17871 AAA lid domain NKI27_13625 PF07724 AAA domain (Cdc48 subfamily) NKI27_13625 PF00004 ATPase family associated with various cellular activities (AAA) NKI27_13635 PF05947 Type VI secretion system, TssF NKI27_13645 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NKI27_13665 PF00483 Nucleotidyl transferase NKI27_13665 PF01050 Mannose-6-phosphate isomerase NKI27_13670 PF02719 Polysaccharide biosynthesis protein NKI27_13675 PF02397 Bacterial sugar transferase NKI27_13680 PF01370 NAD dependent epimerase/dehydratase family NKI27_13690 PF02350 UDP-N-acetylglucosamine 2-epimerase NKI27_13700 PF08485 Polysaccharide biosynthesis protein C-terminal NKI27_13700 PF02719 Polysaccharide biosynthesis protein NKI27_13720 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NKI27_13725 PF00132 Bacterial transferase hexapeptide (six repeats) NKI27_13740 PF01609 Transposase DDE domain NKI27_13740 PF13808 DDE_Tnp_1-associated NKI27_13765 PF01501 Glycosyl transferase family 8 NKI27_13765 PF00535 Glycosyl transferase family 2 NKI27_13775 PF00535 Glycosyl transferase family 2 NKI27_13785 PF08239 Bacterial SH3 domain NKI27_13785 PF00005 ABC transporter NKI27_13810 PF00005 ABC transporter NKI27_13810 PF00664 ABC transporter transmembrane region NKI27_13815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NKI27_13815 PF00529 HlyD membrane-fusion protein of T1SS NKI27_13820 PF02321 Outer membrane efflux protein NKI27_13825 PF04321 RmlD substrate binding domain NKI27_13830 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NKI27_13835 PF00483 Nucleotidyl transferase NKI27_13840 PF16363 GDP-mannose 4,6 dehydratase NKI27_13845 PF01370 NAD dependent epimerase/dehydratase family NKI27_13850 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NKI27_13850 PF10996 Beta-Casp domain NKI27_13850 PF00753 Metallo-beta-lactamase superfamily NKI27_13860 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NKI27_13860 PF10996 Beta-Casp domain NKI27_13860 PF00753 Metallo-beta-lactamase superfamily NKI27_13865 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NKI27_13865 PF00591 Glycosyl transferase family, a/b domain NKI27_13865 PF02885 Glycosyl transferase family, helical bundle domain NKI27_13870 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NKI27_13870 PF14572 Phosphoribosyl synthetase-associated domain NKI27_13880 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NKI27_13880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NKI27_13885 PF00132 Bacterial transferase hexapeptide (six repeats) NKI27_13890 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NKI27_13895 PF02350 UDP-N-acetylglucosamine 2-epimerase NKI27_13920 PF12697 Alpha/beta hydrolase family NKI27_13920 PF08241 Methyltransferase domain NKI27_13935 PF00534 Glycosyl transferases group 1 NKI27_13950 PF00535 Glycosyl transferase family 2 NKI27_13980 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NKI27_13980 PF00437 Type II/IV secretion system protein NKI27_13985 PF00482 Type II secretion system (T2SS), protein F NKI27_13990 PF01478 Type IV leader peptidase family NKI27_13990 PF06750 Bacterial Peptidase A24 N-terminal domain NKI27_14005 PF01121 Dephospho-CoA kinase NKI27_14010 PF03884 DNA gyrase inhibitor YacG NKI27_14015 PF01230 HIT domain NKI27_14020 PF03788 LrgA family NKI27_14025 PF04172 LrgB-like family NKI27_14030 PF18389 TrmO C-terminal domain NKI27_14030 PF01980 tRNA-methyltransferase O NKI27_14040 PF03692 Putative zinc- or iron-chelating domain NKI27_14045 PF00672 HAMP domain NKI27_14045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_14045 PF00512 His Kinase A (phospho-acceptor) domain NKI27_14045 PF01627 Hpt domain NKI27_14045 PF00072 Response regulator receiver domain NKI27_14045 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NKI27_14050 PF01022 Bacterial regulatory protein, arsR family NKI27_14085 PF00196 Bacterial regulatory proteins, luxR family NKI27_14085 PF00072 Response regulator receiver domain NKI27_14090 PF07044 Protein of unknown function (DUF1329) NKI27_14100 PF02803 Thiolase, C-terminal domain NKI27_14100 PF00108 Thiolase, N-terminal domain NKI27_14105 PF03969 AFG1-like ATPase NKI27_14115 PF01784 NIF3 (NGG1p interacting factor 3) NKI27_14120 PF00815 Histidinol dehydrogenase NKI27_14125 PF01634 ATP phosphoribosyltransferase NKI27_14130 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NKI27_14135 PF01722 BolA-like protein NKI27_14155 PF02405 Permease MlaE NKI27_14160 PF00005 ABC transporter NKI27_14165 PF01699 Sodium/calcium exchanger protein NKI27_14170 PF00571 CBS domain NKI27_14170 PF01380 SIS domain NKI27_14185 PF00005 ABC transporter NKI27_14185 PF12399 Branched-chain amino acid ATP-binding cassette transporter NKI27_14190 PF04552 Sigma-54, DNA binding domain NKI27_14190 PF04963 Sigma-54 factor, core binding domain NKI27_14190 PF00309 Sigma-54 factor, Activator interacting domain (AID) NKI27_14195 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NKI27_14200 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NKI27_14205 PF03668 P-loop ATPase protein family NKI27_14210 PF00381 PTS HPr component phosphorylation site NKI27_14215 PF00571 CBS domain NKI27_14215 PF01769 Divalent cation transporter NKI27_14215 PF03448 MgtE intracellular N domain NKI27_14220 PF04751 Protein of unknown function (DUF615) NKI27_14225 PF00795 Carbon-nitrogen hydrolase NKI27_14235 PF10150 Ribonuclease E/G family NKI27_14235 PF00575 S1 RNA binding domain NKI27_14240 PF02545 Maf-like protein NKI27_14245 PF04093 rod shape-determining protein MreD NKI27_14250 PF04085 rod shape-determining protein MreC NKI27_14260 PF02686 Glu-tRNAGln amidotransferase C subunit NKI27_14265 PF01425 Amidase NKI27_14270 PF02934 GatB/GatE catalytic domain NKI27_14270 PF02637 GatB domain NKI27_14275 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NKI27_14280 PF02565 Recombination protein O C terminal NKI27_14280 PF11967 Recombination protein O N terminal NKI27_14285 PF07650 KH domain NKI27_14285 PF01926 50S ribosome-binding GTPase NKI27_14290 PF00035 Double-stranded RNA binding motif NKI27_14290 PF14622 Ribonuclease-III-like NKI27_14300 PF10502 Signal peptidase, peptidase S26 NKI27_14305 PF06421 GTP-binding protein LepA C-terminus NKI27_14305 PF03144 Elongation factor Tu domain 2 NKI27_14305 PF00009 Elongation factor Tu GTP binding domain NKI27_14305 PF00679 Elongation factor G C-terminus NKI27_14310 PF03707 Bacterial signalling protein N terminal repeat NKI27_14310 PF00990 Diguanylate cyclase, GGDEF domain NKI27_14310 PF00563 EAL domain NKI27_14315 PF13180 PDZ domain NKI27_14315 PF17820 PDZ domain NKI27_14325 PF03888 MucB/RseB N-terminal domain NKI27_14325 PF17188 MucB/RseB C-terminal domain NKI27_14330 PF03873 Anti sigma-E protein RseA, C-terminal domain NKI27_14330 PF03872 Anti sigma-E protein RseA, N-terminal domain NKI27_14335 PF04542 Sigma-70 region 2 NKI27_14335 PF08281 Sigma-70, region 4 NKI27_14340 PF02910 Fumarate reductase flavoprotein C-term NKI27_14340 PF00890 FAD binding domain NKI27_14345 PF03937 Flavinator of succinate dehydrogenase NKI27_14360 PF03167 Uracil DNA glycosylase superfamily NKI27_14365 PF01336 OB-fold nucleic acid binding domain NKI27_14365 PF00152 tRNA synthetases class II (D, K and N) NKI27_14380 PF17768 RecJ OB domain NKI27_14380 PF02272 DHHA1 domain NKI27_14380 PF01368 DHH family NKI27_14385 PF14821 Threonine synthase N terminus NKI27_14385 PF00291 Pyridoxal-phosphate dependent enzyme NKI27_14390 PF01842 ACT domain NKI27_14390 PF03447 Homoserine dehydrogenase, NAD binding domain NKI27_14390 PF00742 Homoserine dehydrogenase NKI27_14395 PF10411 Disulfide bond isomerase protein N-terminus NKI27_14395 PF13098 Thioredoxin-like domain NKI27_14400 PF01245 Ribosomal protein L19 NKI27_14405 PF01746 tRNA (Guanine-1)-methyltransferase NKI27_14410 PF01782 RimM N-terminal domain NKI27_14410 PF05239 PRC-barrel domain NKI27_14415 PF00886 Ribosomal protein S16 NKI27_14420 PF02978 Signal peptide binding domain NKI27_14420 PF02881 SRP54-type protein, helical bundle domain NKI27_14420 PF00448 SRP54-type protein, GTPase domain NKI27_14430 PF01595 Cyclin M transmembrane N-terminal domain NKI27_14430 PF03471 Transporter associated domain NKI27_14430 PF00571 CBS domain NKI27_14445 PF00462 Glutaredoxin NKI27_14450 PF00202 Aminotransferase class-III NKI27_14455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NKI27_14455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NKI27_14460 PF08402 TOBE domain NKI27_14460 PF00005 ABC transporter NKI27_14465 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NKI27_14465 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NKI27_14470 PF08220 DeoR-like helix-turn-helix domain NKI27_14470 PF00455 DeoR C terminal sensor domain NKI27_14475 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NKI27_14475 PF01266 FAD dependent oxidoreductase NKI27_14480 PF00512 His Kinase A (phospho-acceptor) domain NKI27_14480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_14480 PF00672 HAMP domain NKI27_14485 PF00486 Transcriptional regulatory protein, C terminal NKI27_14485 PF00072 Response regulator receiver domain NKI27_14490 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NKI27_14515 PF00990 Diguanylate cyclase, GGDEF domain NKI27_14515 PF00072 Response regulator receiver domain NKI27_14520 PF04264 YceI-like domain NKI27_14525 PF01292 Prokaryotic cytochrome b561 NKI27_14530 PF00563 EAL domain NKI27_14530 PF05231 MASE1 NKI27_14540 PF10263 SprT-like family NKI27_14545 PF00155 Aminotransferase class I and II NKI27_14550 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NKI27_14550 PF00293 NUDIX domain NKI27_14550 PF09297 NADH pyrophosphatase zinc ribbon domain NKI27_14560 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NKI27_14560 PF00072 Response regulator receiver domain NKI27_14560 PF01627 Hpt domain NKI27_14560 PF00512 His Kinase A (phospho-acceptor) domain NKI27_14560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_14560 PF00672 HAMP domain NKI27_14570 PF07859 alpha/beta hydrolase fold NKI27_14575 PF06167 Glucose-regulated metallo-peptidase M90 NKI27_14585 PF00136 DNA polymerase family B NKI27_14585 PF03104 DNA polymerase family B, exonuclease domain NKI27_14595 PF03707 Bacterial signalling protein N terminal repeat NKI27_14595 PF00990 Diguanylate cyclase, GGDEF domain NKI27_14595 PF00563 EAL domain NKI27_14600 PF09905 DNA-binding protein VF530 NKI27_14615 PF00005 ABC transporter NKI27_14615 PF12848 ABC transporter NKI27_14620 PF01272 Transcription elongation factor, GreA/GreB, C-term NKI27_14620 PF03449 Transcription elongation factor, N-terminal NKI27_14635 PF07683 Cobalamin synthesis protein cobW C-terminal domain NKI27_14635 PF02492 CobW/HypB/UreG, nucleotide-binding domain NKI27_14650 PF00672 HAMP domain NKI27_14650 PF17200 Single Cache domain 2 NKI27_14650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NKI27_14655 PF00672 HAMP domain NKI27_14655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NKI27_14655 PF02743 Cache domain NKI27_14660 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NKI27_14660 PF12833 Helix-turn-helix domain NKI27_14670 PF00892 EamA-like transporter family NKI27_14675 PF00793 DAHP synthetase I family NKI27_14695 PF00873 AcrB/AcrD/AcrF family NKI27_14700 PF13533 Biotin-lipoyl like NKI27_14710 PF01212 Beta-eliminating lyase NKI27_14725 PF00027 Cyclic nucleotide-binding domain NKI27_14725 PF00520 Ion transport protein NKI27_14740 PF01464 Transglycosylase SLT domain NKI27_14765 PF01556 DnaJ C terminal domain NKI27_14765 PF00226 DnaJ domain NKI27_14780 PF00873 AcrB/AcrD/AcrF family NKI27_14790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NKI27_14805 PF01810 LysE type translocator NKI27_14850 PF00196 Bacterial regulatory proteins, luxR family NKI27_14850 PF17874 MalT-like TPR region NKI27_14865 PF00155 Aminotransferase class I and II NKI27_14865 PF00392 Bacterial regulatory proteins, gntR family NKI27_14870 PF03969 AFG1-like ATPase NKI27_14875 PF00849 RNA pseudouridylate synthase NKI27_14875 PF01479 S4 domain NKI27_14880 PF00270 DEAD/DEAH box helicase NKI27_14880 PF00271 Helicase conserved C-terminal domain NKI27_14900 PF05971 RNA methyltransferase NKI27_14905 PF01553 Acyltransferase NKI27_14920 PF00271 Helicase conserved C-terminal domain NKI27_14920 PF04851 Type III restriction enzyme, res subunit NKI27_14960 PF00149 Calcineurin-like phosphoesterase NKI27_14960 PF12320 Type 5 capsule protein repressor C-terminal domain NKI27_14965 PF13476 AAA domain NKI27_14980 PF00270 DEAD/DEAH box helicase NKI27_14980 PF00271 Helicase conserved C-terminal domain NKI27_14985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NKI27_14985 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NKI27_14995 PF00881 Nitroreductase family NKI27_15000 PF05958 tRNA (Uracil-5-)-methyltransferase NKI27_15015 PF00005 ABC transporter NKI27_15015 PF00664 ABC transporter transmembrane region NKI27_15030 PF00106 short chain dehydrogenase NKI27_15035 PF00561 alpha/beta hydrolase fold NKI27_15045 PF00795 Carbon-nitrogen hydrolase NKI27_15055 PF00924 Mechanosensitive ion channel NKI27_15055 PF05552 Conserved TM helix NKI27_15060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_15060 PF00986 DNA gyrase B subunit, carboxyl terminus NKI27_15060 PF01751 Toprim domain NKI27_15060 PF00204 DNA gyrase B NKI27_15070 PF00082 Subtilase family NKI27_15070 PF01483 Proprotein convertase P-domain NKI27_15075 PF01425 Amidase NKI27_15085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_15085 PF00512 His Kinase A (phospho-acceptor) domain NKI27_15085 PF01627 Hpt domain NKI27_15085 PF00072 Response regulator receiver domain NKI27_15085 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NKI27_15085 PF00672 HAMP domain NKI27_15090 PF17932 Tetracyclin repressor-like, C-terminal domain NKI27_15090 PF00440 Bacterial regulatory proteins, tetR family NKI27_15105 PF01039 Carboxyl transferase domain NKI27_15110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_15110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_15110 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_15115 PF00378 Enoyl-CoA hydratase/isomerase NKI27_15120 PF00364 Biotin-requiring enzyme NKI27_15120 PF00289 Biotin carboxylase, N-terminal domain NKI27_15120 PF02785 Biotin carboxylase C-terminal domain NKI27_15120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NKI27_15125 PF00106 short chain dehydrogenase NKI27_15140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_15140 PF03466 LysR substrate binding domain NKI27_15150 PF08443 RimK-like ATP-grasp domain NKI27_15150 PF18030 RimK PreATP-grasp domain NKI27_15160 PF08443 RimK-like ATP-grasp domain NKI27_15160 PF18030 RimK PreATP-grasp domain NKI27_15165 PF17969 L,D-transpeptidase C-terminal domain NKI27_15165 PF03734 L,D-transpeptidase catalytic domain NKI27_15175 PF00860 Permease family NKI27_15180 PF00156 Phosphoribosyl transferase domain NKI27_15190 PF01544 CorA-like Mg2+ transporter protein NKI27_15200 PF00691 OmpA family NKI27_15210 PF03448 MgtE intracellular N domain NKI27_15210 PF01769 Divalent cation transporter NKI27_15210 PF00571 CBS domain NKI27_15230 PF02308 MgtC family NKI27_15235 PF00849 RNA pseudouridylate synthase NKI27_15235 PF01479 S4 domain NKI27_15240 PF03109 ABC1 family NKI27_15245 PF01557 Fumarylacetoacetate (FAA) hydrolase family NKI27_15250 PF02913 FAD linked oxidases, C-terminal domain NKI27_15250 PF01565 FAD binding domain NKI27_15255 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NKI27_15255 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NKI27_15260 PF13488 Glycine zipper NKI27_15260 PF00691 OmpA family NKI27_15270 PF00271 Helicase conserved C-terminal domain NKI27_15270 PF00270 DEAD/DEAH box helicase NKI27_15275 PF00924 Mechanosensitive ion channel NKI27_15275 PF12795 Mechanosensitive ion channel porin domain NKI27_15275 PF12794 Mechanosensitive ion channel inner membrane domain 1 NKI27_15290 PF01116 Fructose-bisphosphate aldolase class-II NKI27_15295 PF00162 Phosphoglycerate kinase NKI27_15300 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NKI27_15300 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NKI27_15305 PF02780 Transketolase, C-terminal domain NKI27_15305 PF00456 Transketolase, thiamine diphosphate binding domain NKI27_15305 PF02779 Transketolase, pyrimidine binding domain NKI27_15330 PF04717 Type VI secretion system, phage-baseplate injector NKI27_15335 PF01022 Bacterial regulatory protein, arsR family NKI27_15340 PF02773 S-adenosylmethionine synthetase, C-terminal domain NKI27_15340 PF02772 S-adenosylmethionine synthetase, central domain NKI27_15340 PF00438 S-adenosylmethionine synthetase, N-terminal domain NKI27_15345 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NKI27_15345 PF05221 S-adenosyl-L-homocysteine hydrolase NKI27_15350 PF02219 Methylenetetrahydrofolate reductase NKI27_15355 PF04452 RNA methyltransferase NKI27_15360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NKI27_15360 PF00529 HlyD membrane-fusion protein of T1SS NKI27_15365 PF00873 AcrB/AcrD/AcrF family NKI27_15395 PF04286 Protein of unknown function (DUF445) NKI27_15405 PF03631 Virulence factor BrkB NKI27_15410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NKI27_15410 PF00072 Response regulator receiver domain NKI27_15410 PF00512 His Kinase A (phospho-acceptor) domain NKI27_15410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_15410 PF00672 HAMP domain NKI27_15410 PF01627 Hpt domain NKI27_15415 PF08298 PrkA AAA domain NKI27_15415 PF06798 PrkA serine protein kinase C-terminal domain NKI27_15420 PF04285 Protein of unknown function (DUF444) NKI27_15425 PF04293 SpoVR like protein NKI27_15430 PF11944 Protein of unknown function (DUF3461) NKI27_15440 PF01458 Uncharacterized protein family (UPF0051) NKI27_15445 PF00005 ABC transporter NKI27_15450 PF01458 Uncharacterized protein family (UPF0051) NKI27_15455 PF00266 Aminotransferase class-V NKI27_15460 PF01521 Iron-sulphur cluster biosynthesis NKI27_15465 PF01883 Iron-sulfur cluster assembly protein NKI27_15470 PF02657 Fe-S metabolism associated domain NKI27_15490 PF00365 Phosphofructokinase NKI27_15505 PF00486 Transcriptional regulatory protein, C terminal NKI27_15505 PF00072 Response regulator receiver domain NKI27_15510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_15520 PF00462 Glutaredoxin NKI27_15525 PF00440 Bacterial regulatory proteins, tetR family NKI27_15530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NKI27_15535 PF00873 AcrB/AcrD/AcrF family NKI27_15545 PF00691 OmpA family NKI27_15545 PF05736 OprF membrane domain NKI27_15555 PF00144 Beta-lactamase NKI27_15565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_15565 PF03466 LysR substrate binding domain NKI27_15570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NKI27_15570 PF00289 Biotin carboxylase, N-terminal domain NKI27_15570 PF02785 Biotin carboxylase C-terminal domain NKI27_15575 PF00682 HMGL-like NKI27_15575 PF02436 Conserved carboxylase domain NKI27_15575 PF00364 Biotin-requiring enzyme NKI27_15580 PF00484 Carbonic anhydrase NKI27_15585 PF05724 Thiopurine S-methyltransferase (TPMT) NKI27_15590 PF05154 TM2 domain NKI27_15595 PF05656 Protein of unknown function (DUF805) NKI27_15615 PF07308 Protein of unknown function (DUF1456) NKI27_15620 PF10928 Protein of unknown function (DUF2810) NKI27_15635 PF00005 ABC transporter NKI27_15655 PF03971 Monomeric isocitrate dehydrogenase NKI27_15665 PF03848 Tellurite resistance protein TehB NKI27_15670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_15670 PF03466 LysR substrate binding domain NKI27_15675 PF06062 Uncharacterised protein family (UPF0231) NKI27_15685 PF03793 PASTA domain NKI27_15685 PF00069 Protein kinase domain NKI27_15690 PF07690 Major Facilitator Superfamily NKI27_15695 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NKI27_15695 PF04324 BFD-like [2Fe-2S] binding domain NKI27_15695 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NKI27_15695 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_15695 PF18267 Rubredoxin NAD+ reductase C-terminal domain NKI27_15705 PF01568 Molydopterin dinucleotide binding domain NKI27_15705 PF04324 BFD-like [2Fe-2S] binding domain NKI27_15705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NKI27_15705 PF00384 Molybdopterin oxidoreductase NKI27_15710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NKI27_15725 PF08443 RimK-like ATP-grasp domain NKI27_15725 PF18030 RimK PreATP-grasp domain NKI27_15725 PF02080 TrkA-C domain NKI27_15740 PF01740 STAS domain NKI27_15740 PF00916 Sulfate permease family NKI27_15745 PF00849 RNA pseudouridylate synthase NKI27_15745 PF01479 S4 domain NKI27_15750 PF01709 Transcriptional regulator NKI27_15760 PF00924 Mechanosensitive ion channel NKI27_15765 PF00849 RNA pseudouridylate synthase NKI27_15765 PF01479 S4 domain NKI27_15770 PF00472 RF-1 domain NKI27_15785 PF12833 Helix-turn-helix domain NKI27_15785 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NKI27_15790 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NKI27_15800 PF03109 ABC1 family NKI27_15805 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NKI27_15805 PF04055 Radical SAM superfamily NKI27_15810 PF03099 Biotin/lipoate A/B protein ligase family NKI27_15815 PF04359 Protein of unknown function (DUF493) NKI27_15820 PF01063 Amino-transferase class IV NKI27_15825 PF07943 Penicillin-binding protein 5, C-terminal domain NKI27_15825 PF00768 D-alanyl-D-alanine carboxypeptidase NKI27_15830 PF03330 Lytic transglycolase NKI27_15830 PF05036 Sporulation related domain NKI27_15835 PF13406 Transglycosylase SLT domain NKI27_15840 PF01098 Cell cycle protein NKI27_15845 PF03717 Penicillin-binding Protein dimerisation domain NKI27_15845 PF00905 Penicillin binding protein transpeptidase domain NKI27_15850 PF02590 Predicted SPOUT methyltransferase NKI27_15860 PF01467 Cytidylyltransferase-like NKI27_15865 PF00171 Aldehyde dehydrogenase family NKI27_15880 PF09335 SNARE associated Golgi protein NKI27_15885 PF00004 ATPase family associated with various cellular activities (AAA) NKI27_15885 PF02190 ATP-dependent protease La (LON) substrate-binding domain NKI27_15885 PF05362 Lon protease (S16) C-terminal proteolytic domain NKI27_15895 PF07885 Ion channel NKI27_15905 PF00920 Dehydratase family NKI27_15910 PF00186 Dihydrofolate reductase NKI27_15915 PF08447 PAS fold NKI27_15915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NKI27_15915 PF08447 PAS fold NKI27_15915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NKI27_15920 PF00303 Thymidylate synthase NKI27_15925 PF01790 Prolipoprotein diacylglyceryl transferase NKI27_15930 PF01925 Sulfite exporter TauE/SafE NKI27_15945 PF00691 OmpA family NKI27_15945 PF13677 Membrane MotB of proton-channel complex MotA/MotB NKI27_15950 PF01618 MotA/TolQ/ExbB proton channel family NKI27_15955 PF02609 Exonuclease VII small subunit NKI27_15960 PF00348 Polyprenyl synthetase NKI27_15965 PF02779 Transketolase, pyrimidine binding domain NKI27_15965 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NKI27_15965 PF02780 Transketolase, C-terminal domain NKI27_15970 PF00925 GTP cyclohydrolase II NKI27_15975 PF06463 Molybdenum Cofactor Synthesis C NKI27_15975 PF04055 Radical SAM superfamily NKI27_15980 PF01967 MoaC family NKI27_15985 PF02581 Thiamine monophosphate synthase NKI27_15990 PF01960 ArgJ family NKI27_15995 PF02810 SEC-C motif NKI27_15995 PF07517 SecA DEAD-like domain NKI27_15995 PF01043 SecA preprotein cross-linking domain NKI27_15995 PF07516 SecA Wing and Scaffold domain NKI27_16000 PF01476 LysM domain NKI27_16000 PF01551 Peptidase family M23 NKI27_16000 PF08525 Opacity-associated protein A N-terminal motif NKI27_16010 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NKI27_16015 PF12327 FtsZ family, C-terminal domain NKI27_16015 PF00091 Tubulin/FtsZ family, GTPase domain NKI27_16020 PF02491 SHS2 domain inserted in FTSA NKI27_16025 PF03799 Cell division protein FtsQ NKI27_16025 PF08478 POTRA domain, FtsQ-type NKI27_16030 PF07478 D-ala D-ala ligase C-terminus NKI27_16030 PF01820 D-ala D-ala ligase N-terminus NKI27_16035 PF01225 Mur ligase family, catalytic domain NKI27_16035 PF02875 Mur ligase family, glutamate ligase domain NKI27_16035 PF08245 Mur ligase middle domain NKI27_16040 PF04101 Glycosyltransferase family 28 C-terminal domain NKI27_16040 PF03033 Glycosyltransferase family 28 N-terminal domain NKI27_16045 PF01098 Cell cycle protein NKI27_16050 PF02875 Mur ligase family, glutamate ligase domain NKI27_16050 PF08245 Mur ligase middle domain NKI27_16055 PF00953 Glycosyl transferase family 4 NKI27_16055 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NKI27_16060 PF01225 Mur ligase family, catalytic domain NKI27_16060 PF02875 Mur ligase family, glutamate ligase domain NKI27_16060 PF08245 Mur ligase middle domain NKI27_16065 PF01225 Mur ligase family, catalytic domain NKI27_16065 PF02875 Mur ligase family, glutamate ligase domain NKI27_16065 PF08245 Mur ligase middle domain NKI27_16070 PF00905 Penicillin binding protein transpeptidase domain NKI27_16070 PF03717 Penicillin-binding Protein dimerisation domain NKI27_16075 PF04999 Cell division protein FtsL NKI27_16080 PF01795 MraW methylase family NKI27_16085 PF02381 MraZ protein, putative antitoxin-like NKI27_16095 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NKI27_16100 PF04348 LppC putative lipoprotein NKI27_16105 PF02021 Uncharacterised protein family UPF0102 NKI27_16110 PF13580 SIS domain NKI27_16115 PF04386 Stringent starvation protein B NKI27_16120 PF00043 Glutathione S-transferase, C-terminal domain NKI27_16120 PF02798 Glutathione S-transferase, N-terminal domain NKI27_16125 PF02167 Cytochrome C1 family NKI27_16130 PF00033 Cytochrome b/b6/petB NKI27_16130 PF00032 Cytochrome b(C-terminal)/b6/petD NKI27_16135 PF00355 Rieske [2Fe-2S] domain NKI27_16135 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NKI27_16140 PF00380 Ribosomal protein S9/S16 NKI27_16145 PF00572 Ribosomal protein L13 NKI27_16150 PF01026 TatD related DNase NKI27_16155 PF03144 Elongation factor Tu domain 2 NKI27_16155 PF16658 Class II release factor RF3, C-terminal domain NKI27_16155 PF00009 Elongation factor Tu GTP binding domain NKI27_16160 PF02743 Cache domain NKI27_16160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_16160 PF00512 His Kinase A (phospho-acceptor) domain NKI27_16165 PF00072 Response regulator receiver domain NKI27_16170 PF00583 Acetyltransferase (GNAT) family NKI27_16180 PF00682 HMGL-like NKI27_16180 PF08502 LeuA allosteric (dimerisation) domain NKI27_16185 PF12833 Helix-turn-helix domain NKI27_16185 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NKI27_16205 PF01066 CDP-alcohol phosphatidyltransferase NKI27_16210 PF10369 Small subunit of acetolactate synthase NKI27_16215 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NKI27_16215 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NKI27_16215 PF00205 Thiamine pyrophosphate enzyme, central domain NKI27_16225 PF10431 C-terminal, D2-small domain, of ClpB protein NKI27_16225 PF00004 ATPase family associated with various cellular activities (AAA) NKI27_16225 PF17871 AAA lid domain NKI27_16225 PF02861 Clp amino terminal domain, pathogenicity island component NKI27_16225 PF07724 AAA domain (Cdc48 subfamily) NKI27_16230 PF02578 Multi-copper polyphenol oxidoreductase laccase NKI27_16235 PF01479 S4 domain NKI27_16235 PF00849 RNA pseudouridylate synthase NKI27_16240 PF13525 Outer membrane lipoprotein NKI27_16245 PF00795 Carbon-nitrogen hydrolase NKI27_16245 PF02540 NAD synthase NKI27_16250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_16250 PF00512 His Kinase A (phospho-acceptor) domain NKI27_16255 PF00072 Response regulator receiver domain NKI27_16255 PF00158 Sigma-54 interaction domain NKI27_16255 PF02954 Bacterial regulatory protein, Fis family NKI27_16260 PF01266 FAD dependent oxidoreductase NKI27_16280 PF05567 Neisseria PilC beta-propeller domain NKI27_16305 PF02401 LytB protein NKI27_16310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NKI27_16315 PF01252 Signal peptidase (SPase) II NKI27_16320 PF08264 Anticodon-binding domain of tRNA NKI27_16320 PF06827 Zinc finger found in FPG and IleRS NKI27_16320 PF00133 tRNA synthetases class I (I, L, M and V) NKI27_16325 PF06574 FAD synthetase NKI27_16325 PF01687 Riboflavin kinase NKI27_16330 PF03023 Lipid II flippase MurJ NKI27_16335 PF01649 Ribosomal protein S20 NKI27_16340 PF00696 Amino acid kinase family NKI27_16340 PF01472 PUA domain NKI27_16345 PF01018 GTP1/OBG NKI27_16345 PF01926 50S ribosome-binding GTPase NKI27_16350 PF01016 Ribosomal L27 protein NKI27_16355 PF00829 Ribosomal prokaryotic L21 protein NKI27_16360 PF00348 Polyprenyl synthetase NKI27_16365 PF06974 Protein of unknown function (DUF1298) NKI27_16365 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NKI27_16380 PF04608 Phosphatidylglycerophosphatase A NKI27_16385 PF00586 AIR synthase related protein, N-terminal domain NKI27_16385 PF02769 AIR synthase related protein, C-terminal domain NKI27_16390 PF01029 NusB family NKI27_16395 PF00885 6,7-dimethyl-8-ribityllumazine synthase NKI27_16400 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NKI27_16400 PF00925 GTP cyclohydrolase II NKI27_16405 PF00677 Lumazine binding domain NKI27_16410 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NKI27_16410 PF01872 RibD C-terminal domain NKI27_16415 PF03477 ATP cone domain NKI27_16420 PF00464 Serine hydroxymethyltransferase NKI27_16425 PF12848 ABC transporter NKI27_16425 PF00005 ABC transporter NKI27_16430 PF07238 PilZ domain NKI27_16435 PF18073 Rubredoxin metal binding domain NKI27_16440 PF01053 Cys/Met metabolism PLP-dependent enzyme NKI27_16445 PF01208 Uroporphyrinogen decarboxylase (URO-D) NKI27_16450 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NKI27_16450 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_16455 PF00310 Glutamine amidotransferases class-II NKI27_16455 PF04898 Glutamate synthase central domain NKI27_16455 PF01645 Conserved region in glutamate synthase NKI27_16455 PF01493 GXGXG motif NKI27_16465 PF01761 3-dehydroquinate synthase NKI27_16470 PF01202 Shikimate kinase NKI27_16480 PF11741 AMIN domain NKI27_16480 PF00263 Bacterial type II and III secretion system protein NKI27_16480 PF03958 Bacterial type II/III secretion system short domain NKI27_16480 PF07660 Secretin and TonB N terminus short domain NKI27_16485 PF04351 Pilus assembly protein, PilP NKI27_16490 PF04350 Pilus assembly protein, PilO NKI27_16495 PF05137 Fimbrial assembly protein (PilN) NKI27_16500 PF11104 Type IV pilus assembly protein PilM; NKI27_16505 PF17092 Penicillin-binding protein OB-like domain NKI27_16505 PF00912 Transglycosylase NKI27_16505 PF00905 Penicillin binding protein transpeptidase domain NKI27_16515 PF01323 DSBA-like thioredoxin domain NKI27_16520 PF00034 Cytochrome c NKI27_16525 PF01926 50S ribosome-binding GTPase NKI27_16535 PF00171 Aldehyde dehydrogenase family NKI27_16540 PF01467 Cytidylyltransferase-like NKI27_16545 PF00037 4Fe-4S binding domain NKI27_16570 PF01594 AI-2E family transporter NKI27_16575 PF17941 Polyphosphate kinase C-terminal domain 1 NKI27_16575 PF13090 Polyphosphate kinase C-terminal domain 2 NKI27_16575 PF13089 Polyphosphate kinase N-terminal domain NKI27_16575 PF02503 Polyphosphate kinase middle domain NKI27_16580 PF00490 Delta-aminolevulinic acid dehydratase NKI27_16605 PF08351 Domain of unknown function (DUF1726) NKI27_16605 PF13718 GNAT acetyltransferase 2 NKI27_16605 PF05127 Helicase NKI27_16605 PF17176 tRNA-binding domain NKI27_16615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_16615 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_16615 PF18158 Adaptive response protein AidB N-terminal domain NKI27_16620 PF13462 Thioredoxin NKI27_16645 PF00282 Pyridoxal-dependent decarboxylase conserved domain NKI27_16660 PF00563 EAL domain NKI27_16660 PF01590 GAF domain NKI27_16660 PF00990 Diguanylate cyclase, GGDEF domain NKI27_16660 PF00360 Phytochrome region NKI27_16665 PF01384 Phosphate transporter family NKI27_16670 PF00990 Diguanylate cyclase, GGDEF domain NKI27_16670 PF00072 Response regulator receiver domain NKI27_16675 PF00990 Diguanylate cyclase, GGDEF domain NKI27_16675 PF03707 Bacterial signalling protein N terminal repeat NKI27_16675 PF00563 EAL domain NKI27_16680 PF12706 Beta-lactamase superfamily domain NKI27_16700 PF07992 Pyridine nucleotide-disulphide oxidoreductase NKI27_16700 PF18113 Rubredoxin binding C-terminal domain NKI27_16705 PF00301 Rubredoxin NKI27_16710 PF04345 Chorismate lyase NKI27_16715 PF01040 UbiA prenyltransferase family NKI27_16720 PF00072 Response regulator receiver domain NKI27_16720 PF00486 Transcriptional regulatory protein, C terminal NKI27_16725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_16725 PF00989 PAS fold NKI27_16725 PF11808 Phosphate regulon sensor protein PhoR NKI27_16725 PF00512 His Kinase A (phospho-acceptor) domain NKI27_16735 PF03466 LysR substrate binding domain NKI27_16735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_16740 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NKI27_16740 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NKI27_16745 PF00005 ABC transporter NKI27_16750 PF00072 Response regulator receiver domain NKI27_16765 PF00849 RNA pseudouridylate synthase NKI27_16790 PF00005 ABC transporter NKI27_16795 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_16800 PF02769 AIR synthase related protein, C-terminal domain NKI27_16800 PF00586 AIR synthase related protein, N-terminal domain NKI27_16805 PF00924 Mechanosensitive ion channel NKI27_16805 PF05552 Conserved TM helix NKI27_16815 PF01494 FAD binding domain NKI27_16820 PF01230 HIT domain NKI27_16835 PF01895 PhoU domain NKI27_16840 PF00005 ABC transporter NKI27_16845 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_16850 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_16855 PF12849 PBP superfamily domain NKI27_16865 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NKI27_16870 PF03061 Thioesterase superfamily NKI27_16875 PF00999 Sodium/hydrogen exchanger family NKI27_16875 PF02080 TrkA-C domain NKI27_16875 PF02254 TrkA-N domain NKI27_16880 PF13545 Crp-like helix-turn-helix domain NKI27_16880 PF00027 Cyclic nucleotide-binding domain NKI27_16885 PF02566 OsmC-like protein NKI27_16890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NKI27_16895 PF02675 S-adenosylmethionine decarboxylase NKI27_16900 PF00485 Phosphoribulokinase / Uridine kinase family NKI27_16905 PF00563 EAL domain NKI27_16905 PF00990 Diguanylate cyclase, GGDEF domain NKI27_16905 PF08448 PAS fold NKI27_16915 PF00696 Amino acid kinase family NKI27_16915 PF00583 Acetyltransferase (GNAT) family NKI27_16920 PF01546 Peptidase family M20/M25/M40 NKI27_16920 PF07687 Peptidase dimerisation domain NKI27_16930 PF00990 Diguanylate cyclase, GGDEF domain NKI27_16935 PF00696 Amino acid kinase family NKI27_16940 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NKI27_16940 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NKI27_16940 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NKI27_16940 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NKI27_16945 PF00692 dUTPase NKI27_16950 PF04127 DNA / pantothenate metabolism flavoprotein NKI27_16950 PF02441 Flavoprotein NKI27_16955 PF04002 RadC-like JAB domain NKI27_16960 PF00830 Ribosomal L28 family NKI27_16965 PF00471 Ribosomal protein L33 NKI27_16970 PF03949 Malic enzyme, NAD binding domain NKI27_16970 PF00390 Malic enzyme, N-terminal domain NKI27_16980 PF01197 Ribosomal protein L31 NKI27_16985 PF00270 DEAD/DEAH box helicase NKI27_16985 PF00271 Helicase conserved C-terminal domain NKI27_16985 PF17764 3′ DNA-binding domain (3′BD) NKI27_16985 PF18074 Primosomal protein N C-terminal domain NKI27_16985 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NKI27_16990 PF03485 Arginyl tRNA synthetase N terminal domain NKI27_16990 PF05746 DALR anticodon binding domain NKI27_16990 PF00750 tRNA synthetases class I (R) NKI27_17000 PF00227 Proteasome subunit NKI27_17005 PF10431 C-terminal, D2-small domain, of ClpB protein NKI27_17005 PF00004 ATPase family associated with various cellular activities (AAA) NKI27_17005 PF07724 AAA domain (Cdc48 subfamily) NKI27_17020 PF00391 PEP-utilising enzyme, mobile domain NKI27_17020 PF02896 PEP-utilising enzyme, TIM barrel domain NKI27_17020 PF05524 PEP-utilising enzyme, N-terminal NKI27_17020 PF01590 GAF domain NKI27_17025 PF00293 NUDIX domain NKI27_17040 PF17785 PUA-like domain NKI27_17040 PF10672 S-adenosylmethionine-dependent methyltransferase NKI27_17045 PF02347 Glycine cleavage system P-protein NKI27_17050 PF02347 Glycine cleavage system P-protein NKI27_17055 PF01597 Glycine cleavage H-protein NKI27_17060 PF08669 Glycine cleavage T-protein C-terminal barrel domain NKI27_17060 PF01571 Aminomethyltransferase folate-binding domain NKI27_17065 PF05728 Uncharacterised protein family (UPF0227) NKI27_17070 PF00149 Calcineurin-like phosphoesterase NKI27_17080 PF00293 NUDIX domain NKI27_17085 PF13667 ThiC-associated domain NKI27_17085 PF01964 Radical SAM ThiC family NKI27_17090 PF02321 Outer membrane efflux protein NKI27_17095 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NKI27_17125 PF00534 Glycosyl transferases group 1 NKI27_17125 PF13439 Glycosyltransferase Family 4 NKI27_17130 PF00534 Glycosyl transferases group 1 NKI27_17130 PF13439 Glycosyltransferase Family 4 NKI27_17140 PF08335 GlnD PII-uridylyltransferase NKI27_17140 PF03710 Glutamate-ammonia ligase adenylyltransferase NKI27_17175 PF01928 CYTH domain NKI27_17180 PF13609 Gram-negative porin NKI27_17185 PF02580 D-Tyr-tRNA(Tyr) deacylase NKI27_17190 PF00561 alpha/beta hydrolase fold NKI27_17195 PF00679 Elongation factor G C-terminus NKI27_17195 PF00009 Elongation factor Tu GTP binding domain NKI27_17195 PF03144 Elongation factor Tu domain 2 NKI27_17200 PF00120 Glutamine synthetase, catalytic domain NKI27_17200 PF03951 Glutamine synthetase, beta-Grasp domain NKI27_17210 PF00989 PAS fold NKI27_17210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_17210 PF00512 His Kinase A (phospho-acceptor) domain NKI27_17215 PF00158 Sigma-54 interaction domain NKI27_17215 PF02954 Bacterial regulatory protein, Fis family NKI27_17215 PF00072 Response regulator receiver domain NKI27_17250 PF07963 Prokaryotic N-terminal methylation motif NKI27_17260 PF00482 Type II secretion system (T2SS), protein F NKI27_17265 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NKI27_17265 PF00437 Type II/IV secretion system protein NKI27_17275 PF13401 AAA domain NKI27_17275 PF01471 Putative peptidoglycan binding domain NKI27_17280 PF00263 Bacterial type II and III secretion system protein NKI27_17280 PF03958 Bacterial type II/III secretion system short domain NKI27_17310 PF00583 Acetyltransferase (GNAT) family NKI27_17315 PF00202 Aminotransferase class-III NKI27_17325 PF06339 Ectoine synthase NKI27_17330 PF00696 Amino acid kinase family NKI27_17330 PF13840 ACT domain NKI27_17340 PF04055 Radical SAM superfamily NKI27_17345 PF01228 Glycine radical NKI27_17345 PF02901 Pyruvate formate lyase-like NKI27_17350 PF01228 Glycine radical NKI27_17350 PF02901 Pyruvate formate lyase-like NKI27_17360 PF12833 Helix-turn-helix domain NKI27_17365 PF00436 Single-strand binding protein family NKI27_17370 PF07690 Major Facilitator Superfamily NKI27_17375 PF17755 UvrA DNA-binding domain NKI27_17375 PF17760 UvrA interaction domain NKI27_17380 PF01196 Ribosomal protein L17 NKI27_17385 PF01000 RNA polymerase Rpb3/RpoA insert domain NKI27_17385 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NKI27_17385 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NKI27_17390 PF00163 Ribosomal protein S4/S9 N-terminal domain NKI27_17390 PF01479 S4 domain NKI27_17395 PF00411 Ribosomal protein S11 NKI27_17400 PF00416 Ribosomal protein S13/S18 NKI27_17405 PF00444 Ribosomal protein L36 NKI27_17410 PF00344 SecY translocase NKI27_17415 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NKI27_17420 PF00327 Ribosomal protein L30p/L7e NKI27_17425 PF03719 Ribosomal protein S5, C-terminal domain NKI27_17425 PF00333 Ribosomal protein S5, N-terminal domain NKI27_17430 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NKI27_17435 PF00347 Ribosomal protein L6 NKI27_17440 PF00410 Ribosomal protein S8 NKI27_17445 PF00253 Ribosomal protein S14p/S29e NKI27_17450 PF00281 Ribosomal protein L5 NKI27_17450 PF00673 ribosomal L5P family C-terminus NKI27_17455 PF00467 KOW motif NKI27_17455 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NKI27_17460 PF00238 Ribosomal protein L14p/L23e NKI27_17465 PF00366 Ribosomal protein S17 NKI27_17470 PF00831 Ribosomal L29 protein NKI27_17475 PF00252 Ribosomal protein L16p/L10e NKI27_17480 PF07650 KH domain NKI27_17480 PF00189 Ribosomal protein S3, C-terminal domain NKI27_17485 PF00237 Ribosomal protein L22p/L17e NKI27_17490 PF00203 Ribosomal protein S19 NKI27_17495 PF00181 Ribosomal Proteins L2, RNA binding domain NKI27_17495 PF03947 Ribosomal Proteins L2, C-terminal domain NKI27_17500 PF00276 Ribosomal protein L23 NKI27_17505 PF00573 Ribosomal protein L4/L1 family NKI27_17510 PF00297 Ribosomal protein L3 NKI27_17515 PF00338 Ribosomal protein S10p/S20e NKI27_17520 PF00009 Elongation factor Tu GTP binding domain NKI27_17520 PF03144 Elongation factor Tu domain 2 NKI27_17520 PF03143 Elongation factor Tu C-terminal domain NKI27_17525 PF00679 Elongation factor G C-terminus NKI27_17525 PF14492 Elongation Factor G, domain II NKI27_17525 PF03764 Elongation factor G, domain IV NKI27_17525 PF03144 Elongation factor Tu domain 2 NKI27_17525 PF00009 Elongation factor Tu GTP binding domain NKI27_17530 PF00177 Ribosomal protein S7p/S5e NKI27_17535 PF00164 Ribosomal protein S12/S23 NKI27_17540 PF04997 RNA polymerase Rpb1, domain 1 NKI27_17540 PF00623 RNA polymerase Rpb1, domain 2 NKI27_17540 PF05000 RNA polymerase Rpb1, domain 4 NKI27_17540 PF04998 RNA polymerase Rpb1, domain 5 NKI27_17540 PF04983 RNA polymerase Rpb1, domain 3 NKI27_17545 PF10385 RNA polymerase beta subunit external 1 domain NKI27_17545 PF04563 RNA polymerase beta subunit NKI27_17545 PF04561 RNA polymerase Rpb2, domain 2 NKI27_17545 PF04565 RNA polymerase Rpb2, domain 3 NKI27_17545 PF00562 RNA polymerase Rpb2, domain 6 NKI27_17545 PF04560 RNA polymerase Rpb2, domain 7 NKI27_17550 PF00542 Ribosomal protein L7/L12 C-terminal domain NKI27_17550 PF16320 Ribosomal protein L7/L12 dimerisation domain NKI27_17555 PF00466 Ribosomal protein L10 NKI27_17560 PF00687 Ribosomal protein L1p/L10e family NKI27_17565 PF00298 Ribosomal protein L11, RNA binding domain NKI27_17565 PF03946 Ribosomal protein L11, N-terminal domain NKI27_17570 PF00467 KOW motif NKI27_17570 PF02357 Transcription termination factor nusG NKI27_17575 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NKI27_17610 PF03309 Type III pantothenate kinase NKI27_17615 PF02237 Biotin protein ligase C terminal domain NKI27_17615 PF08279 HTH domain NKI27_17615 PF03099 Biotin/lipoate A/B protein ligase family NKI27_17665 PF00579 tRNA synthetases class I (W and Y) NKI27_17670 PF01551 Peptidase family M23 NKI27_17670 PF04225 Opacity-associated protein A LysM-like domain NKI27_17675 PF03702 Anhydro-N-acetylmuramic acid kinase NKI27_17680 PF01521 Iron-sulphur cluster biosynthesis NKI27_17695 PF01118 Semialdehyde dehydrogenase, NAD binding domain NKI27_17695 PF02774 Semialdehyde dehydrogenase, dimerisation domain NKI27_17705 PF03653 Uncharacterised protein family (UPF0093) NKI27_17710 PF08543 Phosphomethylpyrimidine kinase NKI27_17710 PF02581 Thiamine monophosphate synthase NKI27_17715 PF02581 Thiamine monophosphate synthase NKI27_17720 PF00202 Aminotransferase class-III NKI27_17730 PF00905 Penicillin binding protein transpeptidase domain NKI27_17730 PF00912 Transglycosylase NKI27_17730 PF14814 Bifunctional transglycosylase second domain NKI27_17740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_17740 PF00072 Response regulator receiver domain NKI27_17760 PF17746 SfsA N-terminal OB domain NKI27_17760 PF03749 Sugar fermentation stimulation protein RE domain NKI27_17765 PF01258 Prokaryotic dksA/traR C4-type zinc finger NKI27_17770 PF00749 tRNA synthetases class I (E and Q), catalytic domain NKI27_17775 PF00512 His Kinase A (phospho-acceptor) domain NKI27_17775 PF08447 PAS fold NKI27_17775 PF00989 PAS fold NKI27_17775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_17780 PF02954 Bacterial regulatory protein, Fis family NKI27_17780 PF00072 Response regulator receiver domain NKI27_17780 PF00158 Sigma-54 interaction domain NKI27_17785 PF01743 Poly A polymerase head domain NKI27_17785 PF12626 Polymerase A arginine-rich C-terminus NKI27_17785 PF12627 Probable RNA and SrmB- binding site of polymerase A NKI27_17790 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NKI27_17795 PF02548 Ketopantoate hydroxymethyltransferase NKI27_17800 PF02569 Pantoate-beta-alanine ligase NKI27_17805 PF00342 Phosphoglucose isomerase NKI27_17810 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NKI27_17815 PF02152 Dihydroneopterin aldolase NKI27_17820 PF02660 Glycerol-3-phosphate acyltransferase NKI27_17825 PF00814 Glycoprotease family NKI27_17830 PF01165 Ribosomal protein S21 NKI27_17835 PF09424 Yqey-like protein NKI27_17840 PF08278 DNA primase DnaG DnaB-binding NKI27_17840 PF13662 Toprim domain NKI27_17840 PF01807 CHC2 zinc finger NKI27_17840 PF08275 DNA primase catalytic core, N-terminal domain NKI27_17840 PF10410 DnaB-helicase binding domain of primase NKI27_17845 PF04545 Sigma-70, region 4 NKI27_17845 PF04539 Sigma-70 region 3 NKI27_17845 PF04542 Sigma-70 region 2 NKI27_17845 PF03979 Sigma-70 factor, region 1.1 NKI27_17845 PF04546 Sigma-70, non-essential region NKI27_17845 PF00140 Sigma-70 factor, region 1.2 NKI27_17885 PF04116 Fatty acid hydroxylase superfamily NKI27_17895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NKI27_17895 PF00672 HAMP domain NKI27_17910 PF01593 Flavin containing amine oxidoreductase NKI27_17940 PF00270 DEAD/DEAH box helicase NKI27_17940 PF00271 Helicase conserved C-terminal domain NKI27_17940 PF17191 RecG wedge domain NKI27_17945 PF03466 LysR substrate binding domain NKI27_17945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_17955 PF01042 Endoribonuclease L-PSP NKI27_17960 PF13291 ACT domain NKI27_17960 PF02824 TGS domain NKI27_17960 PF04607 Region found in RelA / SpoT proteins NKI27_17970 PF00625 Guanylate kinase NKI27_17975 PF01266 FAD dependent oxidoreductase NKI27_17980 PF08340 Domain of unknown function (DUF1732) NKI27_17980 PF03755 YicC-like family, N-terminal region NKI27_17985 PF01138 3' exoribonuclease family, domain 1 NKI27_17985 PF03725 3' exoribonuclease family, domain 2 NKI27_18010 PF02321 Outer membrane efflux protein NKI27_18015 PF00664 ABC transporter transmembrane region NKI27_18015 PF00005 ABC transporter NKI27_18015 PF03412 Peptidase C39 family NKI27_18020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NKI27_18020 PF00529 HlyD membrane-fusion protein of T1SS NKI27_18055 PF00196 Bacterial regulatory proteins, luxR family NKI27_18055 PF03472 Autoinducer binding domain NKI27_18060 PF05193 Peptidase M16 inactive domain NKI27_18060 PF00675 Insulinase (Peptidase family M16) NKI27_18070 PF00156 Phosphoribosyl transferase domain NKI27_18090 PF01136 Peptidase family U32 NKI27_18090 PF16325 Peptidase family U32 C-terminal domain NKI27_18095 PF01636 Phosphotransferase enzyme family NKI27_18105 PF01367 5'-3' exonuclease, C-terminal SAM fold NKI27_18105 PF01612 3'-5' exonuclease NKI27_18105 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NKI27_18105 PF00476 DNA polymerase family A NKI27_18110 PF00437 Type II/IV secretion system protein NKI27_18115 PF00437 Type II/IV secretion system protein NKI27_18120 PF01168 Alanine racemase, N-terminal domain NKI27_18125 PF03807 NADP oxidoreductase coenzyme F420-dependent NKI27_18125 PF14748 Pyrroline-5-carboxylate reductase dimerisation NKI27_18130 PF02325 YGGT family NKI27_18135 PF00350 Dynamin family NKI27_18140 PF00561 alpha/beta hydrolase fold NKI27_18145 PF00561 alpha/beta hydrolase fold NKI27_18145 PF07021 Methionine biosynthesis protein MetW NKI27_18155 PF01725 Ham1 family NKI27_18160 PF04055 Radical SAM superfamily NKI27_18160 PF06969 HemN C-terminal domain NKI27_18165 PF00072 Response regulator receiver domain NKI27_18165 PF02954 Bacterial regulatory protein, Fis family NKI27_18165 PF00158 Sigma-54 interaction domain NKI27_18170 PF02390 Putative methyltransferase NKI27_18175 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NKI27_18180 PF01078 Magnesium chelatase, subunit ChlI NKI27_18180 PF13335 Magnesium chelatase, subunit ChlI C-terminal NKI27_18185 PF04380 Membrane fusogenic activity NKI27_18190 PF00543 Nitrogen regulatory protein P-II NKI27_18195 PF00909 Ammonium Transporter Family NKI27_18200 PF17284 Spermidine synthase tetramerisation domain NKI27_18205 PF17944 Arginine decarboxylase C-terminal helical extension NKI27_18205 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NKI27_18205 PF17810 Arginine decarboxylase helical bundle domain NKI27_18210 PF17171 Glutathione S-transferase, C-terminal domain NKI27_18210 PF17172 Glutathione S-transferase N-terminal domain NKI27_18215 PF12833 Helix-turn-helix domain NKI27_18215 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NKI27_18225 PF02277 Phosphoribosyltransferase NKI27_18230 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NKI27_18235 PF00266 Aminotransferase class-V NKI27_18240 PF03170 Bacterial cellulose synthase subunit NKI27_18240 PF07238 PilZ domain NKI27_18240 PF00535 Glycosyl transferase family 2 NKI27_18245 PF02770 Acyl-CoA dehydrogenase, middle domain NKI27_18245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NKI27_18245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NKI27_18245 PF12806 Acetyl-CoA dehydrogenase C-terminal like NKI27_18255 PF00899 ThiF family NKI27_18270 PF08240 Alcohol dehydrogenase GroES-like domain NKI27_18270 PF00107 Zinc-binding dehydrogenase NKI27_18285 PF00497 Bacterial extracellular solute-binding proteins, family 3 NKI27_18290 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_18295 PF00528 Binding-protein-dependent transport system inner membrane component NKI27_18300 PF00005 ABC transporter NKI27_18335 PF00571 CBS domain NKI27_18345 PF12697 Alpha/beta hydrolase family NKI27_18355 PF09997 Predicted membrane protein (DUF2238) NKI27_18365 PF00313 'Cold-shock' DNA-binding domain NKI27_18370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NKI27_18375 PF00753 Metallo-beta-lactamase superfamily NKI27_18380 PF06865 Pyrimidine/purine nucleoside phosphorylase NKI27_18395 PF03880 DbpA RNA binding domain NKI27_18395 PF00270 DEAD/DEAH box helicase NKI27_18395 PF00271 Helicase conserved C-terminal domain NKI27_18400 PF00313 'Cold-shock' DNA-binding domain NKI27_18405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NKI27_18410 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NKI27_18420 PF00994 Probable molybdopterin binding domain NKI27_18420 PF02464 Competence-damaged protein NKI27_18455 PF00378 Enoyl-CoA hydratase/isomerase NKI27_18460 PF06794 Uncharacterised protein family (UPF0270) NKI27_18465 PF00106 short chain dehydrogenase NKI27_18495 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NKI27_18495 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NKI27_18495 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NKI27_18495 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NKI27_18500 PF00271 Helicase conserved C-terminal domain NKI27_18500 PF12137 RNA polymerase recycling family C-terminal NKI27_18500 PF00176 SNF2 family N-terminal domain NKI27_18500 PF18339 RapA N-terminal Tudor like domain 1 NKI27_18500 PF18337 RapA N-terminal Tudor like domain NKI27_18510 PF00072 Response regulator receiver domain NKI27_18510 PF01627 Hpt domain NKI27_18510 PF00512 His Kinase A (phospho-acceptor) domain NKI27_18510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_18510 PF00672 HAMP domain NKI27_18510 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NKI27_18515 PF01627 Hpt domain NKI27_18515 PF00512 His Kinase A (phospho-acceptor) domain NKI27_18515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_18515 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NKI27_18515 PF00672 HAMP domain NKI27_18515 PF00072 Response regulator receiver domain NKI27_18525 PF00581 Rhodanese-like domain NKI27_18530 PF07152 YaeQ protein NKI27_18555 PF01925 Sulfite exporter TauE/SafE NKI27_18560 PF01641 SelR domain NKI27_18560 PF01625 Peptide methionine sulfoxide reductase NKI27_18565 PF06779 Uncharacterised MFS-type transporter YbfB NKI27_18570 PF01361 Tautomerase enzyme NKI27_18585 PF00593 TonB dependent receptor NKI27_18585 PF07715 TonB-dependent Receptor Plug Domain NKI27_18590 PF01205 Uncharacterized protein family UPF0029 NKI27_18590 PF09186 Domain of unknown function (DUF1949) NKI27_18595 PF01464 Transglycosylase SLT domain NKI27_18605 PF00672 HAMP domain NKI27_18605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_18605 PF00512 His Kinase A (phospho-acceptor) domain NKI27_18605 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB NKI27_18605 PF08448 PAS fold NKI27_18610 PF00990 Diguanylate cyclase, GGDEF domain NKI27_18615 PF02954 Bacterial regulatory protein, Fis family NKI27_18615 PF00072 Response regulator receiver domain NKI27_18615 PF00158 Sigma-54 interaction domain NKI27_18630 PF07715 TonB-dependent Receptor Plug Domain NKI27_18630 PF00593 TonB dependent receptor NKI27_18635 PF00072 Response regulator receiver domain NKI27_18635 PF00196 Bacterial regulatory proteins, luxR family NKI27_18640 PF00672 HAMP domain NKI27_18640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_18640 PF00512 His Kinase A (phospho-acceptor) domain NKI27_18645 PF03280 Proteobacterial lipase chaperone protein NKI27_18650 PF00561 alpha/beta hydrolase fold NKI27_18655 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NKI27_18655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NKI27_18680 PF12843 Putative quorum-sensing-regulated virulence factor NKI27_18685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NKI27_18690 PF04304 Protein of unknown function (DUF454) NKI27_18695 PF01743 Poly A polymerase head domain NKI27_18695 PF12627 Probable RNA and SrmB- binding site of polymerase A NKI27_18695 PF02272 DHHA1 domain NKI27_18695 PF01368 DHH family NKI27_18695 PF00571 CBS domain NKI27_18705 PF00106 short chain dehydrogenase NKI27_18720 PF01926 50S ribosome-binding GTPase NKI27_18725 PF05661 Protein of unknown function (DUF808) NKI27_18735 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal NKI27_18735 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal NKI27_18745 PF01037 Lrp/AsnC ligand binding domain NKI27_18750 PF08502 LeuA allosteric (dimerisation) domain NKI27_18750 PF00682 HMGL-like NKI27_18765 PF02230 Phospholipase/Carboxylesterase NKI27_18775 PF06039 Malate:quinone oxidoreductase (Mqo) NKI27_18785 PF01425 Amidase NKI27_18810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NKI27_18810 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NKI27_18835 PF01336 OB-fold nucleic acid binding domain NKI27_18835 PF00152 tRNA synthetases class II (D, K and N) NKI27_18840 PF01627 Hpt domain NKI27_18840 PF00512 His Kinase A (phospho-acceptor) domain NKI27_18840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_18840 PF00672 HAMP domain NKI27_18840 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NKI27_18840 PF00072 Response regulator receiver domain NKI27_18845 PF00270 DEAD/DEAH box helicase NKI27_18845 PF00271 Helicase conserved C-terminal domain NKI27_18860 PF13193 AMP-binding enzyme C-terminal domain NKI27_18860 PF00501 AMP-binding enzyme NKI27_18865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NKI27_18865 PF00672 HAMP domain NKI27_18865 PF02743 Cache domain NKI27_18875 PF00579 tRNA synthetases class I (W and Y) NKI27_18885 PF01546 Peptidase family M20/M25/M40 NKI27_18885 PF07687 Peptidase dimerisation domain NKI27_18890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NKI27_18890 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NKI27_18890 PF00205 Thiamine pyrophosphate enzyme, central domain NKI27_18905 PF02253 Phospholipase A1 NKI27_18930 PF06508 Queuosine biosynthesis protein QueC NKI27_18950 PF00072 Response regulator receiver domain NKI27_18960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_18960 PF00512 His Kinase A (phospho-acceptor) domain NKI27_18960 PF09308 LuxQ, periplasmic NKI27_18960 PF00072 Response regulator receiver domain NKI27_18975 PF00144 Beta-lactamase NKI27_18985 PF13581 Histidine kinase-like ATPase domain NKI27_18985 PF13426 PAS domain NKI27_18985 PF07568 Histidine kinase NKI27_18990 PF01040 UbiA prenyltransferase family NKI27_18995 PF02628 Cytochrome oxidase assembly protein NKI27_19015 PF00510 Cytochrome c oxidase subunit III NKI27_19020 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 NKI27_19025 PF00115 Cytochrome C and Quinol oxidase polypeptide I NKI27_19030 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NKI27_19030 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NKI27_19035 PF01554 MatE NKI27_19050 PF01432 Peptidase family M3 NKI27_19055 PF00132 Bacterial transferase hexapeptide (six repeats) NKI27_19065 PF00691 OmpA family NKI27_19065 PF13677 Membrane MotB of proton-channel complex MotA/MotB NKI27_19070 PF01618 MotA/TolQ/ExbB proton channel family NKI27_19075 PF08501 Shikimate dehydrogenase substrate binding domain NKI27_19075 PF01488 Shikimate / quinate 5-dehydrogenase NKI27_19075 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NKI27_19080 PF01218 Coproporphyrinogen III oxidase NKI27_19085 PF01300 Telomere recombination NKI27_19090 PF17782 DprA winged helix domain NKI27_19090 PF02481 DNA recombination-mediator protein A NKI27_19100 PF01327 Polypeptide deformylase NKI27_19105 PF00551 Formyl transferase NKI27_19105 PF02911 Formyl transferase, C-terminal domain NKI27_19110 PF01029 NusB family NKI27_19110 PF01189 16S rRNA methyltransferase RsmB/F NKI27_19115 PF02080 TrkA-C domain NKI27_19115 PF02254 TrkA-N domain NKI27_19120 PF02386 Cation transport protein NKI27_19135 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ NKI27_19140 PF02091 Glycyl-tRNA synthetase alpha subunit NKI27_19145 PF02092 Glycyl-tRNA synthetase beta subunit NKI27_19145 PF05746 DALR anticodon binding domain NKI27_19150 PF03279 Bacterial lipid A biosynthesis acyltransferase NKI27_19155 PF09339 IclR helix-turn-helix domain NKI27_19155 PF01614 Bacterial transcriptional regulator NKI27_19160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NKI27_19160 PF00529 HlyD membrane-fusion protein of T1SS NKI27_19165 PF00873 AcrB/AcrD/AcrF family NKI27_19170 PF17876 Cold shock domain NKI27_19170 PF08461 Ribonuclease R winged-helix domain NKI27_19170 PF08206 Ribonuclease B OB domain NKI27_19170 PF00773 RNB domain NKI27_19170 PF00575 S1 RNA binding domain NKI27_19175 PF00313 'Cold-shock' DNA-binding domain NKI27_19180 PF00582 Universal stress protein family NKI27_19185 PF00582 Universal stress protein family NKI27_19190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_19190 PF00512 His Kinase A (phospho-acceptor) domain NKI27_19195 PF00072 Response regulator receiver domain NKI27_19195 PF00486 Transcriptional regulatory protein, C terminal NKI27_19200 PF00970 Oxidoreductase FAD-binding domain NKI27_19200 PF00111 2Fe-2S iron-sulfur cluster binding domain NKI27_19200 PF00175 Oxidoreductase NAD-binding domain NKI27_19230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NKI27_19230 PF01751 Toprim domain NKI27_19230 PF18053 DNA gyrase B subunit insert domain NKI27_19230 PF00204 DNA gyrase B NKI27_19230 PF00986 DNA gyrase B subunit, carboxyl terminus NKI27_19235 PF02463 RecF/RecN/SMC N terminal domain NKI27_19245 PF03109 ABC1 family NKI27_19250 PF00712 DNA polymerase III beta subunit, N-terminal domain NKI27_19250 PF02767 DNA polymerase III beta subunit, central domain NKI27_19250 PF02768 DNA polymerase III beta subunit, C-terminal domain NKI27_19255 PF11638 DnaA N-terminal domain NKI27_19255 PF00308 Bacterial dnaA protein NKI27_19255 PF08299 Bacterial dnaA protein helix-turn-helix NKI27_19260 PF00468 Ribosomal protein L34 NKI27_19265 PF00825 Ribonuclease P NKI27_19270 PF01809 Putative membrane protein insertion efficiency factor