locus-tag class description Amet_0001 PF08299 Bacterial dnaA protein helix-turn-helix Amet_0001 PF00308 Bacterial dnaA protein Amet_0001 PF11638 DnaA N-terminal domain Amet_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Amet_0002 PF02767 DNA polymerase III beta subunit, central domain Amet_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Amet_0004 PF02463 RecF/RecN/SMC N terminal domain Amet_0006 PF00986 DNA gyrase B subunit, carboxyl terminus Amet_0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_0006 PF01751 Toprim domain Amet_0006 PF00204 DNA gyrase B Amet_0007 PF00521 DNA gyrase/topoisomerase IV, subunit A Amet_0007 PF03989 DNA gyrase C-terminal domain, beta-propeller Amet_0008 PF01740 STAS domain Amet_0009 PF13581 Histidine kinase-like ATPase domain Amet_0010 PF04545 Sigma-70, region 4 Amet_0010 PF04539 Sigma-70 region 3 Amet_0010 PF04542 Sigma-70 region 2 Amet_0015 PF02347 Glycine cleavage system P-protein Amet_0016 PF02347 Glycine cleavage system P-protein Amet_0017 PF02445 Quinolinate synthetase A protein Amet_0018 PF00890 FAD binding domain Amet_0019 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Amet_0019 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Amet_0020 PF02829 3H domain Amet_0020 PF08279 HTH domain Amet_0022 PF03699 Uncharacterised protein family (UPF0182) Amet_0024 PF02403 Seryl-tRNA synthetase N-terminal domain Amet_0024 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Amet_0026 PF14437 MafB19-like deaminase Amet_0027 PF01206 Sulfurtransferase TusA Amet_0029 PF00924 Mechanosensitive ion channel Amet_0031 PF00155 Aminotransferase class I and II Amet_0032 PF01250 Ribosomal protein S6 Amet_0033 PF00436 Single-strand binding protein family Amet_0034 PF01084 Ribosomal protein S18 Amet_0037 PF14693 Ribosomal protein TL5, C-terminal domain Amet_0037 PF01386 Ribosomal L25p family Amet_0038 PF01386 Ribosomal L25p family Amet_0038 PF14693 Ribosomal protein TL5, C-terminal domain Amet_0039 PF01546 Peptidase family M20/M25/M40 Amet_0039 PF07687 Peptidase dimerisation domain Amet_0040 PF03606 C4-dicarboxylate anaerobic carrier Amet_0041 PF07969 Amidohydrolase family Amet_0043 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_0043 PF00672 HAMP domain Amet_0043 PF02743 Cache domain Amet_0046 PF02618 YceG-like family Amet_0047 PF00899 ThiF family Amet_0049 PF17805 AsnC-like ligand binding domain Amet_0051 PF04055 Radical SAM superfamily Amet_0051 PF13186 Iron-sulfur cluster-binding domain Amet_0052 PF04055 Radical SAM superfamily Amet_0052 PF13186 Iron-sulfur cluster-binding domain Amet_0053 PF03601 Conserved hypothetical protein 698 Amet_0056 PF00291 Pyridoxal-phosphate dependent enzyme Amet_0057 PF01053 Cys/Met metabolism PLP-dependent enzyme Amet_0058 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Amet_0058 PF01488 Shikimate / quinate 5-dehydrogenase Amet_0058 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Amet_0059 PF10414 Sirohaem synthase dimerisation region Amet_0059 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amet_0059 PF14824 Sirohaem biosynthesis protein central Amet_0060 PF03900 Porphobilinogen deaminase, C-terminal domain Amet_0060 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Amet_0062 PF00490 Delta-aminolevulinic acid dehydratase Amet_0063 PF00202 Aminotransferase class-III Amet_0065 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Amet_0065 PF07685 CobB/CobQ-like glutamine amidotransferase domain Amet_0068 PF00288 GHMP kinases N terminal domain Amet_0069 PF02570 Precorrin-8X methylmutase Amet_0070 PF01888 CbiD Amet_0071 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amet_0072 PF05175 Methyltransferase small domain Amet_0073 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amet_0074 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amet_0075 PF11761 Cobalamin biosynthesis central region Amet_0075 PF11760 Cobalamin synthesis G N-terminal Amet_0075 PF01890 Cobalamin synthesis G C-terminus Amet_0076 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amet_0076 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Amet_0077 PF02571 Precorrin-6x reductase CbiJ/CobK Amet_0081 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Amet_0081 PF01276 Orn/Lys/Arg decarboxylase, major domain Amet_0082 PF02223 Thymidylate kinase Amet_0083 PF06153 Cyclic-di-AMP receptor Amet_0085 PF04468 PSP1 C-terminal conserved region Amet_0086 PF00578 AhpC/TSA family Amet_0087 PF04542 Sigma-70 region 2 Amet_0090 PF05175 Methyltransferase small domain Amet_0091 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amet_0092 PF18277 AbrB C-terminal domain Amet_0092 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Amet_0094 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Amet_0094 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain Amet_0094 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Amet_0095 PF07670 Nucleoside recognition Amet_0096 PF07670 Nucleoside recognition Amet_0097 PF03576 Peptidase family S58 Amet_0098 PF04647 Accessory gene regulator B Amet_0101 PF12704 MacB-like periplasmic core domain Amet_0101 PF00005 ABC transporter Amet_0101 PF02687 FtsX-like permease family Amet_0102 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Amet_0102 PF17203 Single cache domain 3 Amet_0102 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_0103 PF00072 Response regulator receiver domain Amet_0103 PF04397 LytTr DNA-binding domain Amet_0108 PF08281 Sigma-70, region 4 Amet_0108 PF04542 Sigma-70 region 2 Amet_0110 PF09334 tRNA synthetases class I (M) Amet_0110 PF08264 Anticodon-binding domain of tRNA Amet_0110 PF01588 Putative tRNA binding domain Amet_0111 PF01026 TatD related DNase Amet_0117 PF13007 Transposase C of IS166 homeodomain Amet_0117 PF13005 zinc-finger binding domain of transposase IS66 Amet_0117 PF13817 IS66 C-terminal element Amet_0117 PF03050 Transposase IS66 family Amet_0129 PF01022 Bacterial regulatory protein, arsR family Amet_0130 PF00403 Heavy-metal-associated domain Amet_0131 PF03851 UV-endonuclease UvdE Amet_0132 PF00392 Bacterial regulatory proteins, gntR family Amet_0133 PF00005 ABC transporter Amet_0135 PF00188 Cysteine-rich secretory protein family Amet_0135 PF14504 CAP-associated N-terminal Amet_0136 PF07501 G5 domain Amet_0136 PF03990 G5-linked-Ubiquitin-like domain Amet_0136 PF06725 3D domain Amet_0137 PF13662 Toprim domain Amet_0137 PF13331 Domain of unknown function (DUF4093) Amet_0138 PF00398 Ribosomal RNA adenine dimethylase Amet_0140 PF01699 Sodium/calcium exchanger protein Amet_0143 PF14034 Sporulation protein YtrH Amet_0146 PF03806 AbgT putative transporter family Amet_0147 PF03806 AbgT putative transporter family Amet_0148 PF07687 Peptidase dimerisation domain Amet_0148 PF01546 Peptidase family M20/M25/M40 Amet_0149 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Amet_0149 PF01276 Orn/Lys/Arg decarboxylase, major domain Amet_0153 PF08245 Mur ligase middle domain Amet_0153 PF02875 Mur ligase family, glutamate ligase domain Amet_0153 PF01225 Mur ligase family, catalytic domain Amet_0154 PF09182 Bacterial purine repressor, N-terminal Amet_0154 PF00156 Phosphoribosyl transferase domain Amet_0155 PF04026 SpoVG Amet_0156 PF12804 MobA-like NTP transferase domain Amet_0156 PF00132 Bacterial transferase hexapeptide (six repeats) Amet_0157 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Amet_0157 PF14572 Phosphoribosyl synthetase-associated domain Amet_0158 PF01195 Peptidyl-tRNA hydrolase Amet_0160 PF17757 UvrB interaction domain Amet_0160 PF03461 TRCF domain Amet_0160 PF00271 Helicase conserved C-terminal domain Amet_0160 PF02559 CarD-like/TRCF domain Amet_0160 PF00270 DEAD/DEAH box helicase Amet_0162 PF15714 Stage V sporulation protein T C-terminal, transcription factor Amet_0162 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Amet_0164 PF03819 MazG nucleotide pyrophosphohydrolase domain Amet_0164 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amet_0165 PF00216 Bacterial DNA-binding protein Amet_0166 PF01479 S4 domain Amet_0168 PF08486 Stage II sporulation protein Amet_0169 PF07873 YabP family Amet_0172 PF00575 S1 RNA binding domain Amet_0173 PF07228 Stage II sporulation protein E (SpoIIE) Amet_0177 PF17820 PDZ domain Amet_0177 PF03572 Peptidase family S41 Amet_0177 PF01471 Putative peptidoglycan binding domain Amet_0178 PF00395 S-layer homology domain Amet_0187 PF13533 Biotin-lipoyl like Amet_0188 PF00873 AcrB/AcrD/AcrF family Amet_0189 PF00440 Bacterial regulatory proteins, tetR family Amet_0189 PF08359 YsiA-like protein, C-terminal region Amet_0192 PF13614 AAA domain Amet_0192 PF13807 G-rich domain on putative tyrosine kinase Amet_0192 PF02706 Chain length determinant protein Amet_0198 PF07963 Prokaryotic N-terminal methylation motif Amet_0201 PF02397 Bacterial sugar transferase Amet_0204 PF00107 Zinc-binding dehydrogenase Amet_0204 PF08240 Alcohol dehydrogenase GroES-like domain Amet_0206 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Amet_0206 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Amet_0206 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Amet_0207 PF02350 UDP-N-acetylglucosamine 2-epimerase Amet_0208 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Amet_0208 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Amet_0208 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Amet_0209 PF00534 Glycosyl transferases group 1 Amet_0210 PF04932 O-Antigen ligase Amet_0214 PF03023 Lipid II flippase MurJ Amet_0217 PF03816 Cell envelope-related transcriptional attenuator domain Amet_0218 PF04754 Putative transposase, YhgA-like Amet_0220 PF01078 Magnesium chelatase, subunit ChlI Amet_0220 PF13335 Magnesium chelatase, subunit ChlI C-terminal Amet_0221 PF02481 DNA recombination-mediator protein A Amet_0221 PF18255 DNA processing protein A sterile alpha motif domain Amet_0224 PF13091 PLD-like domain Amet_0224 PF13087 AAA domain Amet_0225 PF02954 Bacterial regulatory protein, Fis family Amet_0225 PF00158 Sigma-54 interaction domain Amet_0225 PF13426 PAS domain Amet_0226 PF17042 Nucleotide-binding C-terminal domain Amet_0226 PF07005 Sugar-binding N-terminal domain Amet_0227 PF00465 Iron-containing alcohol dehydrogenase Amet_0228 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Amet_0229 PF00701 Dihydrodipicolinate synthetase family Amet_0247 PF13690 Chemotaxis phosphatase CheX Amet_0248 PF00196 Bacterial regulatory proteins, luxR family Amet_0248 PF00072 Response regulator receiver domain Amet_0249 PF00672 HAMP domain Amet_0249 PF02743 Cache domain Amet_0249 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_0250 PF00936 BMC domain Amet_0251 PF10662 Ethanolamine utilisation - propanediol utilisation Amet_0252 PF03861 ANTAR domain Amet_0252 PF00072 Response regulator receiver domain Amet_0253 PF07568 Histidine kinase Amet_0253 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_0253 PF12282 Signal transduction histidine kinase Amet_0254 PF06277 Ethanolamine utilisation protein EutA Amet_0255 PF06751 Ethanolamine ammonia lyase large subunit (EutB) Amet_0256 PF05985 Ethanolamine ammonia-lyase light chain (EutC) Amet_0257 PF00936 BMC domain Amet_0258 PF16365 Ethanolamine utilization protein EutK C-terminus Amet_0258 PF00936 BMC domain Amet_0259 PF00465 Iron-containing alcohol dehydrogenase Amet_0259 PF00171 Aldehyde dehydrogenase family Amet_0260 PF00936 BMC domain Amet_0261 PF01923 Cobalamin adenosyltransferase Amet_0262 PF06130 Phosphate propanoyltransferase Amet_0265 PF03319 Ethanolamine utilisation protein EutN/carboxysome Amet_0266 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Amet_0266 PF12838 4Fe-4S dicluster domain Amet_0266 PF13375 RnfC Barrel sandwich hybrid domain Amet_0266 PF10531 SLBB domain Amet_0268 PF04346 Ethanolamine utilisation protein, EutH Amet_0269 PF00465 Iron-containing alcohol dehydrogenase Amet_0271 PF06100 MCRA family Amet_0277 PF02719 Polysaccharide biosynthesis protein Amet_0282 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Amet_0283 PF00873 AcrB/AcrD/AcrF family Amet_0284 PF01025 GrpE Amet_0285 PF00012 Hsp70 protein Amet_0287 PF01043 SecA preprotein cross-linking domain Amet_0287 PF07516 SecA Wing and Scaffold domain Amet_0287 PF02810 SEC-C motif Amet_0287 PF07517 SecA DEAD-like domain Amet_0288 PF00486 Transcriptional regulatory protein, C terminal Amet_0288 PF00072 Response regulator receiver domain Amet_0289 PF00512 His Kinase A (phospho-acceptor) domain Amet_0289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_0289 PF00672 HAMP domain Amet_0295 PF00483 Nucleotidyl transferase Amet_0296 PF01618 MotA/TolQ/ExbB proton channel family Amet_0297 PF00691 OmpA family Amet_0297 PF13677 Membrane MotB of proton-channel complex MotA/MotB Amet_0302 PF16363 GDP-mannose 4,6 dehydratase Amet_0306 PF00535 Glycosyl transferase family 2 Amet_0307 PF04138 GtrA-like protein Amet_0314 PF00440 Bacterial regulatory proteins, tetR family Amet_0314 PF16859 Tetracyclin repressor-like, C-terminal domain Amet_0315 PF00209 Sodium:neurotransmitter symporter family Amet_0316 PF13426 PAS domain Amet_0316 PF08448 PAS fold Amet_0316 PF00512 His Kinase A (phospho-acceptor) domain Amet_0316 PF00072 Response regulator receiver domain Amet_0316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_0317 PF03061 Thioesterase superfamily Amet_0318 PF05853 beta-keto acid cleavage enzyme Amet_0319 PF00923 Transaldolase/Fructose-6-phosphate aldolase Amet_0320 PF00561 alpha/beta hydrolase fold Amet_0321 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Amet_0322 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Amet_0323 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Amet_0323 PF07498 Rho termination factor, N-terminal domain Amet_0323 PF07497 Rho termination factor, RNA-binding domain Amet_0324 PF01197 Ribosomal protein L31 Amet_0325 PF00265 Thymidine kinase Amet_0327 PF00890 FAD binding domain Amet_0327 PF03358 NADPH-dependent FMN reductase Amet_0327 PF04205 FMN-binding domain Amet_0330 PF17827 PrmC N-terminal domain Amet_0330 PF13847 Methyltransferase domain Amet_0331 PF03462 PCRF domain Amet_0331 PF00472 RF-1 domain Amet_0333 PF16697 Inner membrane component of T3SS, cytoplasmic domain Amet_0334 PF01098 Cell cycle protein Amet_0335 PF03717 Penicillin-binding Protein dimerisation domain Amet_0335 PF03793 PASTA domain Amet_0335 PF00905 Penicillin binding protein transpeptidase domain Amet_0336 PF03481 Putative GTP-binding controlling metal-binding Amet_0336 PF01300 Telomere recombination Amet_0337 PF01451 Low molecular weight phosphotyrosine protein phosphatase Amet_0338 PF02502 Ribose/Galactose Isomerase Amet_0340 PF14437 MafB19-like deaminase Amet_0341 PF00953 Glycosyl transferase family 4 Amet_0342 PF00209 Sodium:neurotransmitter symporter family Amet_0343 PF02350 UDP-N-acetylglucosamine 2-epimerase Amet_0346 PF00119 ATP synthase A chain Amet_0347 PF00137 ATP synthase subunit C Amet_0348 PF00137 ATP synthase subunit C Amet_0349 PF00430 ATP synthase B/B' CF(0) Amet_0350 PF00213 ATP synthase delta (OSCP) subunit Amet_0351 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Amet_0351 PF00306 ATP synthase alpha/beta chain, C terminal domain Amet_0351 PF02874 ATP synthase alpha/beta family, beta-barrel domain Amet_0352 PF00231 ATP synthase Amet_0353 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Amet_0353 PF02874 ATP synthase alpha/beta family, beta-barrel domain Amet_0354 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Amet_0354 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Amet_0358 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Amet_0359 PF08486 Stage II sporulation protein Amet_0363 PF00873 AcrB/AcrD/AcrF family Amet_0364 PF12116 Stage III sporulation protein D Amet_0366 PF00005 ABC transporter Amet_0368 PF02687 FtsX-like permease family Amet_0368 PF00005 ABC transporter Amet_0368 PF12704 MacB-like periplasmic core domain Amet_0369 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Amet_0369 PF00460 Flagella basal body rod protein Amet_0370 PF00460 Flagella basal body rod protein Amet_0370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Amet_0371 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Amet_0371 PF10135 Rod binding protein Amet_0372 PF07977 FabA-like domain Amet_0375 PF00483 Nucleotidyl transferase Amet_0381 PF00392 Bacterial regulatory proteins, gntR family Amet_0381 PF07729 FCD domain Amet_0389 PF13401 AAA domain Amet_0389 PF09077 Mu B transposition protein, C terminal Amet_0398 PF04542 Sigma-70 region 2 Amet_0398 PF04545 Sigma-70, region 4 Amet_0408 PF01520 N-acetylmuramoyl-L-alanine amidase Amet_0408 PF01471 Putative peptidoglycan binding domain Amet_0442 PF01012 Electron transfer flavoprotein domain Amet_0443 PF00766 Electron transfer flavoprotein FAD-binding domain Amet_0443 PF01012 Electron transfer flavoprotein domain Amet_0445 PF01565 FAD binding domain Amet_0445 PF02913 FAD linked oxidases, C-terminal domain Amet_0452 PF00226 DnaJ domain Amet_0452 PF01556 DnaJ C terminal domain Amet_0452 PF00684 DnaJ central domain Amet_0454 PF02540 NAD synthase Amet_0454 PF00958 GMP synthase C terminal domain Amet_0454 PF00117 Glutamine amidotransferase class-I Amet_0455 PF00356 Bacterial regulatory proteins, lacI family Amet_0456 PF13407 Periplasmic binding protein domain Amet_0457 PF00005 ABC transporter Amet_0458 PF02653 Branched-chain amino acid transport system / permease component Amet_0460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amet_0460 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amet_0464 PF02277 Phosphoribosyltransferase Amet_0465 PF00860 Permease family Amet_0467 PF02743 Cache domain Amet_0467 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_0467 PF00672 HAMP domain Amet_0471 PF01799 [2Fe-2S] binding domain Amet_0471 PF00111 2Fe-2S iron-sulfur cluster binding domain Amet_0472 PF01799 [2Fe-2S] binding domain Amet_0472 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Amet_0472 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Amet_0475 PF13378 Enolase C-terminal domain-like Amet_0475 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Amet_0476 PF17676 LD-carboxypeptidase C-terminal domain Amet_0476 PF02016 LD-carboxypeptidase N-terminal domain Amet_0477 PF01244 Membrane dipeptidase (Peptidase family M19) Amet_0478 PF13411 MerR HTH family regulatory protein Amet_0479 PF00890 FAD binding domain Amet_0479 PF04205 FMN-binding domain Amet_0480 PF00731 AIR carboxylase Amet_0481 PF01969 Protein of unknown function DUF111 Amet_0482 PF02540 NAD synthase Amet_0483 PF01546 Peptidase family M20/M25/M40 Amet_0484 PF08442 ATP-grasp domain Amet_0484 PF00549 CoA-ligase Amet_0485 PF02629 CoA binding domain Amet_0485 PF00549 CoA-ligase Amet_0488 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_0488 PF07730 Histidine kinase Amet_0488 PF05384 Sensor protein DegS Amet_0489 PF00072 Response regulator receiver domain Amet_0489 PF00196 Bacterial regulatory proteins, luxR family Amet_0500 PF01614 Bacterial transcriptional regulator Amet_0500 PF09339 IclR helix-turn-helix domain Amet_0501 PF02447 GntP family permease Amet_0502 PF00920 Dehydratase family Amet_0503 PF01557 Fumarylacetoacetate (FAA) hydrolase family Amet_0504 PF00155 Aminotransferase class I and II Amet_0505 PF03328 HpcH/HpaI aldolase/citrate lyase family Amet_0507 PF04055 Radical SAM superfamily Amet_0507 PF13187 4Fe-4S dicluster domain Amet_0509 PF00291 Pyridoxal-phosphate dependent enzyme Amet_0510 PF00202 Aminotransferase class-III Amet_0511 PF18011 C-terminal domain found in long catalases Amet_0511 PF00199 Catalase Amet_0511 PF06628 Catalase-related immune-responsive Amet_0514 PF03323 Bacillus/Clostridium GerA spore germination protein Amet_0516 PF00005 ABC transporter Amet_0517 PF00528 Binding-protein-dependent transport system inner membrane component Amet_0519 PF00005 ABC transporter Amet_0521 PF00183 Hsp90 protein Amet_0523 PF01891 Cobalt uptake substrate-specific transmembrane region Amet_0525 PF00005 ABC transporter Amet_0527 PF01966 HD domain Amet_0527 PF11871 Domain of unknown function (DUF3391) Amet_0531 PF00300 Histidine phosphatase superfamily (branch 1) Amet_0532 PF01906 Putative heavy-metal-binding Amet_0537 PF00753 Metallo-beta-lactamase superfamily Amet_0538 PF09861 Lactate racemase N-terminal domain Amet_0540 PF00291 Pyridoxal-phosphate dependent enzyme Amet_0541 PF01520 N-acetylmuramoyl-L-alanine amidase Amet_0541 PF01471 Putative peptidoglycan binding domain Amet_0542 PF00149 Calcineurin-like phosphoesterase Amet_0542 PF02872 5'-nucleotidase, C-terminal domain Amet_0544 PF12833 Helix-turn-helix domain Amet_0546 PF00072 Response regulator receiver domain Amet_0546 PF00486 Transcriptional regulatory protein, C terminal Amet_0547 PF00672 HAMP domain Amet_0547 PF00512 His Kinase A (phospho-acceptor) domain Amet_0547 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_0550 PF03480 Bacterial extracellular solute-binding protein, family 7 Amet_0552 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Amet_0552 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Amet_0553 PF00392 Bacterial regulatory proteins, gntR family Amet_0553 PF07729 FCD domain Amet_0554 PF00107 Zinc-binding dehydrogenase Amet_0554 PF08240 Alcohol dehydrogenase GroES-like domain Amet_0555 PF01232 Mannitol dehydrogenase Rossmann domain Amet_0555 PF08125 Mannitol dehydrogenase C-terminal domain Amet_0556 PF08666 SAF domain Amet_0556 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Amet_0557 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Amet_0557 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Amet_0558 PF03480 Bacterial extracellular solute-binding protein, family 7 Amet_0559 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Amet_0560 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Amet_0561 PF03009 Glycerophosphoryl diester phosphodiesterase family Amet_0563 PF02308 MgtC family Amet_0564 PF09861 Lactate racemase N-terminal domain Amet_0566 PF00742 Homoserine dehydrogenase Amet_0566 PF03447 Homoserine dehydrogenase, NAD binding domain Amet_0566 PF01842 ACT domain Amet_0567 PF00291 Pyridoxal-phosphate dependent enzyme Amet_0568 PF00288 GHMP kinases N terminal domain Amet_0569 PF00381 PTS HPr component phosphorylation site Amet_0570 PF13393 Histidyl-tRNA synthetase Amet_0571 PF01634 ATP phosphoribosyltransferase Amet_0572 PF00815 Histidinol dehydrogenase Amet_0573 PF00155 Aminotransferase class I and II Amet_0574 PF00475 Imidazoleglycerol-phosphate dehydratase Amet_0575 PF00117 Glutamine amidotransferase class-I Amet_0576 PF00977 Histidine biosynthesis protein Amet_0577 PF00977 Histidine biosynthesis protein Amet_0578 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Amet_0578 PF01502 Phosphoribosyl-AMP cyclohydrolase Amet_0579 PF02436 Conserved carboxylase domain Amet_0579 PF00682 HMGL-like Amet_0579 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Amet_0579 PF00364 Biotin-requiring enzyme Amet_0579 PF00289 Biotin carboxylase, N-terminal domain Amet_0579 PF02785 Biotin carboxylase C-terminal domain Amet_0580 PF00209 Sodium:neurotransmitter symporter family Amet_0582 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_0582 PF00672 HAMP domain Amet_0582 PF17202 Single cache domain 3 Amet_0583 PF04055 Radical SAM superfamily Amet_0584 PF01228 Glycine radical Amet_0584 PF02901 Pyruvate formate lyase-like Amet_0585 PF03372 Endonuclease/Exonuclease/phosphatase family Amet_0586 PF00356 Bacterial regulatory proteins, lacI family Amet_0587 PF00005 ABC transporter Amet_0588 PF02653 Branched-chain amino acid transport system / permease component Amet_0590 PF08240 Alcohol dehydrogenase GroES-like domain Amet_0590 PF00107 Zinc-binding dehydrogenase Amet_0591 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Amet_0591 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Amet_0592 PF00291 Pyridoxal-phosphate dependent enzyme Amet_0594 PF00176 SNF2 family N-terminal domain Amet_0594 PF00271 Helicase conserved C-terminal domain Amet_0594 PF12419 SNF2 Helicase protein Amet_0597 PF00440 Bacterial regulatory proteins, tetR family Amet_0598 PF00005 ABC transporter Amet_0600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Amet_0602 PF09084 NMT1/THI5 like Amet_0603 PF04397 LytTr DNA-binding domain Amet_0603 PF00072 Response regulator receiver domain Amet_0604 PF00860 Permease family Amet_0607 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Amet_0607 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Amet_0608 PF08345 Flagellar M-ring protein C-terminal Amet_0608 PF01514 Secretory protein of YscJ/FliF family Amet_0609 PF14842 FliG N-terminal domain Amet_0609 PF14841 FliG middle domain Amet_0609 PF01706 FliG C-terminal domain Amet_0612 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Amet_0612 PF02154 Flagellar motor switch protein FliM Amet_0613 PF04509 CheC-like family Amet_0613 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Amet_0614 PF00072 Response regulator receiver domain Amet_0615 PF00771 FHIPEP family Amet_0617 PF06445 GyrI-like small molecule binding domain Amet_0617 PF13411 MerR HTH family regulatory protein Amet_0618 PF04397 LytTr DNA-binding domain Amet_0618 PF00072 Response regulator receiver domain Amet_0622 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Amet_0622 PF01348 Type II intron maturase Amet_0640 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Amet_0640 PF00037 4Fe-4S binding domain Amet_0640 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Amet_0641 PF02906 Iron only hydrogenase large subunit, C-terminal domain Amet_0641 PF02256 Iron hydrogenase small subunit Amet_0641 PF00037 4Fe-4S binding domain Amet_0641 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Amet_0643 PF16868 NMT1-like family Amet_0644 PF18152 DAHP synthase ferredoxin-like domain Amet_0644 PF00793 DAHP synthetase I family Amet_0646 PF02153 Prephenate dehydrogenase Amet_0646 PF01842 ACT domain Amet_0647 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Amet_0648 PF00800 Prephenate dehydratase Amet_0648 PF01817 Chorismate mutase type II Amet_0648 PF01842 ACT domain Amet_0649 PF01264 Chorismate synthase Amet_0650 PF01761 3-dehydroquinate synthase Amet_0651 PF01202 Shikimate kinase Amet_0652 PF14698 Argininosuccinate lyase C-terminal Amet_0652 PF00206 Lyase Amet_0653 PF00764 Arginosuccinate synthase Amet_0655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_0655 PF00512 His Kinase A (phospho-acceptor) domain Amet_0655 PF00989 PAS fold Amet_0655 PF16736 Single Cache-like Amet_0656 PF00486 Transcriptional regulatory protein, C terminal Amet_0656 PF00072 Response regulator receiver domain Amet_0659 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_0659 PF00672 HAMP domain Amet_0660 PF01546 Peptidase family M20/M25/M40 Amet_0660 PF07687 Peptidase dimerisation domain Amet_0661 PF03606 C4-dicarboxylate anaerobic carrier Amet_0663 PF00158 Sigma-54 interaction domain Amet_0663 PF13426 PAS domain Amet_0663 PF02954 Bacterial regulatory protein, Fis family Amet_0664 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Amet_0664 PF12838 4Fe-4S dicluster domain Amet_0664 PF10531 SLBB domain Amet_0664 PF13375 RnfC Barrel sandwich hybrid domain Amet_0665 PF09338 Glycine/sarcosine/betaine reductase component B subunits Amet_0667 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) Amet_0668 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) Amet_0669 PF09338 Glycine/sarcosine/betaine reductase component B subunits Amet_0670 PF09338 Glycine/sarcosine/betaine reductase component B subunits Amet_0671 PF05544 Proline racemase Amet_0673 PF00696 Amino acid kinase family Amet_0674 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Amet_0674 PF04073 Aminoacyl-tRNA editing domain Amet_0674 PF03129 Anticodon binding domain Amet_0675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_0677 PF01557 Fumarylacetoacetate (FAA) hydrolase family Amet_0678 PF13660 Domain of unknown function (DUF4147) Amet_0678 PF05161 MOFRL family Amet_0679 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Amet_0679 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amet_0680 PF08240 Alcohol dehydrogenase GroES-like domain Amet_0680 PF00107 Zinc-binding dehydrogenase Amet_0682 PF01799 [2Fe-2S] binding domain Amet_0682 PF00111 2Fe-2S iron-sulfur cluster binding domain Amet_0683 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Amet_0683 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Amet_0684 PF00860 Permease family Amet_0685 PF07905 Purine catabolism regulatory protein-like family Amet_0685 PF13556 PucR C-terminal helix-turn-helix domain Amet_0685 PF17853 GGDEF-like domain Amet_0687 PF00549 CoA-ligase Amet_0687 PF02629 CoA binding domain Amet_0689 PF06545 Protein of unknown function (DUF1116) Amet_0690 PF04199 Putative cyclase Amet_0691 PF00795 Carbon-nitrogen hydrolase Amet_0692 PF02515 CoA-transferase family III Amet_0694 PF03553 Na+/H+ antiporter family Amet_0696 PF00939 Sodium:sulfate symporter transmembrane region Amet_0697 PF00202 Aminotransferase class-III Amet_0698 PF13520 Amino acid permease Amet_0700 PF00158 Sigma-54 interaction domain Amet_0700 PF02954 Bacterial regulatory protein, Fis family Amet_0700 PF00989 PAS fold Amet_0702 PF00294 pfkB family carbohydrate kinase Amet_0703 PF04227 Indigoidine synthase A like protein Amet_0704 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_0704 PF00512 His Kinase A (phospho-acceptor) domain Amet_0704 PF00672 HAMP domain Amet_0704 PF00989 PAS fold Amet_0705 PF06949 Protein of unknown function (DUF1292) Amet_0706 PF11871 Domain of unknown function (DUF3391) Amet_0706 PF01966 HD domain Amet_0707 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Amet_0707 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Amet_0707 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Amet_0707 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Amet_0708 PF00072 Response regulator receiver domain Amet_0708 PF00486 Transcriptional regulatory protein, C terminal Amet_0709 PF00512 His Kinase A (phospho-acceptor) domain Amet_0709 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_0713 PF06866 Protein of unknown function (DUF1256) Amet_0722 PF14490 Helix-hairpin-helix containing domain Amet_0722 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Amet_0722 PF13538 UvrD-like helicase C-terminal domain Amet_0727 PF00460 Flagella basal body rod protein Amet_0727 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Amet_0728 PF00669 Bacterial flagellin N-terminal helical region Amet_0728 PF00700 Bacterial flagellin C-terminal helical region Amet_0730 PF02623 FliW protein Amet_0731 PF02599 Global regulator protein family Amet_0732 PF00669 Bacterial flagellin N-terminal helical region Amet_0732 PF00700 Bacterial flagellin C-terminal helical region Amet_0750 PF02915 Rubrerythrin Amet_0752 PF00672 HAMP domain Amet_0752 PF01966 HD domain Amet_0759 PF03358 NADPH-dependent FMN reductase Amet_0759 PF04205 FMN-binding domain Amet_0759 PF00890 FAD binding domain Amet_0760 PF00881 Nitroreductase family Amet_0761 PF02645 Uncharacterised protein, DegV family COG1307 Amet_0764 PF02913 FAD linked oxidases, C-terminal domain Amet_0764 PF01565 FAD binding domain Amet_0765 PF01012 Electron transfer flavoprotein domain Amet_0766 PF01012 Electron transfer flavoprotein domain Amet_0766 PF00766 Electron transfer flavoprotein FAD-binding domain Amet_0766 PF13237 4Fe-4S dicluster domain Amet_0767 PF03616 Sodium/glutamate symporter Amet_0769 PF00583 Acetyltransferase (GNAT) family Amet_0770 PF11871 Domain of unknown function (DUF3391) Amet_0770 PF01966 HD domain Amet_0771 PF08668 HDOD domain Amet_0777 PF00753 Metallo-beta-lactamase superfamily Amet_0777 PF10996 Beta-Casp domain Amet_0777 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Amet_0779 PF16868 NMT1-like family Amet_0783 PF01063 Amino-transferase class IV Amet_0785 PF07196 Flagellin hook IN motif Amet_0785 PF02465 Flagellar hook-associated protein 2 N-terminus Amet_0785 PF07195 Flagellar hook-associated protein 2 C-terminus Amet_0786 PF02561 Flagellar protein FliS Amet_0788 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Amet_0788 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Amet_0790 PF01043 SecA preprotein cross-linking domain Amet_0790 PF07516 SecA Wing and Scaffold domain Amet_0790 PF02810 SEC-C motif Amet_0790 PF07517 SecA DEAD-like domain Amet_0791 PF03462 PCRF domain Amet_0791 PF00472 RF-1 domain Amet_0795 PF00669 Bacterial flagellin N-terminal helical region Amet_0795 PF00700 Bacterial flagellin C-terminal helical region Amet_0797 PF00884 Sulfatase Amet_0799 PF17674 HHH domain Amet_0799 PF16921 Tex protein YqgF-like domain Amet_0799 PF09371 Tex-like protein N-terminal domain Amet_0799 PF00575 S1 RNA binding domain Amet_0800 PF07690 Major Facilitator Superfamily Amet_0802 PF12822 ECF transporter, substrate-specific component Amet_0803 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Amet_0804 PF00814 Glycoprotease family Amet_0805 PF00583 Acetyltransferase (GNAT) family Amet_0806 PF08402 TOBE domain Amet_0806 PF00005 ABC transporter Amet_0810 PF12848 ABC transporter Amet_0810 PF16326 ABC transporter C-terminal domain Amet_0810 PF00005 ABC transporter Amet_0813 PF12838 4Fe-4S dicluster domain Amet_0815 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Amet_0815 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Amet_0817 PF02652 L-lactate permease Amet_0818 PF00392 Bacterial regulatory proteins, gntR family Amet_0818 PF07729 FCD domain Amet_0819 PF01012 Electron transfer flavoprotein domain Amet_0820 PF01012 Electron transfer flavoprotein domain Amet_0820 PF00766 Electron transfer flavoprotein FAD-binding domain Amet_0821 PF02913 FAD linked oxidases, C-terminal domain Amet_0821 PF01565 FAD binding domain Amet_0822 PF01910 Thiamine-binding protein Amet_0823 PF00005 ABC transporter Amet_0825 PF08220 DeoR-like helix-turn-helix domain Amet_0825 PF00455 DeoR C terminal sensor domain Amet_0826 PF00294 pfkB family carbohydrate kinase Amet_0827 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Amet_0827 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Amet_0828 PF02378 Phosphotransferase system, EIIC Amet_0828 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Amet_0829 PF12826 Helix-hairpin-helix motif Amet_0829 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Amet_0829 PF03120 NAD-dependent DNA ligase OB-fold domain Amet_0829 PF01653 NAD-dependent DNA ligase adenylation domain Amet_0829 PF00533 BRCA1 C Terminus (BRCT) domain Amet_0832 PF04474 Protein of unknown function (DUF554) Amet_0833 PF00166 Chaperonin 10 Kd subunit Amet_0834 PF00118 TCP-1/cpn60 chaperonin family Amet_0835 PF00589 Phage integrase family Amet_0835 PF14659 Phage integrase, N-terminal SAM-like domain Amet_0847 PF08463 EcoEI R protein C-terminal Amet_0847 PF00271 Helicase conserved C-terminal domain Amet_0847 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Amet_0847 PF04851 Type III restriction enzyme, res subunit Amet_0848 PF02384 N-6 DNA Methylase Amet_0849 PF01420 Type I restriction modification DNA specificity domain Amet_0850 PF02463 RecF/RecN/SMC N terminal domain Amet_0864 PF00717 Peptidase S24-like Amet_0864 PF01726 LexA DNA binding domain Amet_0869 PF00692 dUTPase Amet_0870 PF03323 Bacillus/Clostridium GerA spore germination protein Amet_0872 PF05504 Spore germination B3/ GerAC like, C-terminal Amet_0886 PF01381 Helix-turn-helix Amet_0888 PF12833 Helix-turn-helix domain Amet_0889 PF00892 EamA-like transporter family Amet_0890 PF01588 Putative tRNA binding domain Amet_0892 PF00294 pfkB family carbohydrate kinase Amet_0894 PF00005 ABC transporter Amet_0894 PF17912 MalK OB fold domain Amet_0894 PF03459 TOBE domain Amet_0895 PF07470 Glycosyl Hydrolase Family 88 Amet_0897 PF00528 Binding-protein-dependent transport system inner membrane component Amet_0898 PF00528 Binding-protein-dependent transport system inner membrane component Amet_0899 PF00295 Glycosyl hydrolases family 28 Amet_0900 PF04962 KduI/IolB family Amet_0902 PF00356 Bacterial regulatory proteins, lacI family Amet_0905 PF07875 Coat F domain Amet_0909 PF00571 CBS domain Amet_0909 PF00478 IMP dehydrogenase / GMP reductase domain Amet_0910 PF00117 Glutamine amidotransferase class-I Amet_0910 PF00958 GMP synthase C terminal domain Amet_0913 PF07885 Ion channel Amet_0914 PF10531 SLBB domain Amet_0916 PF02222 ATP-grasp domain Amet_0916 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Amet_0917 PF00731 AIR carboxylase Amet_0918 PF01259 SAICAR synthetase Amet_0919 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase Amet_0921 PF00586 AIR synthase related protein, N-terminal domain Amet_0921 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Amet_0921 PF02769 AIR synthase related protein, C-terminal domain Amet_0922 PF00156 Phosphoribosyl transferase domain Amet_0923 PF00586 AIR synthase related protein, N-terminal domain Amet_0923 PF02769 AIR synthase related protein, C-terminal domain Amet_0924 PF00551 Formyl transferase Amet_0925 PF02142 MGS-like domain Amet_0925 PF01808 AICARFT/IMPCHase bienzyme Amet_0926 PF02843 Phosphoribosylglycinamide synthetase, C domain Amet_0926 PF02844 Phosphoribosylglycinamide synthetase, N domain Amet_0926 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Amet_0929 PF13426 PAS domain Amet_0929 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_0929 PF08447 PAS fold Amet_0930 PF03180 NLPA lipoprotein Amet_0931 PF00528 Binding-protein-dependent transport system inner membrane component Amet_0932 PF00005 ABC transporter Amet_0932 PF09383 NIL domain Amet_0934 PF01371 Trp repressor protein Amet_0935 PF13840 ACT domain Amet_0935 PF00696 Amino acid kinase family Amet_0938 PF00072 Response regulator receiver domain Amet_0938 PF01966 HD domain Amet_0940 PF00672 HAMP domain Amet_0940 PF16591 Helical bimodular sensor domain Amet_0940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_0941 PF00580 UvrD/REP helicase N-terminal domain Amet_0941 PF13361 UvrD-like helicase C-terminal domain Amet_0942 PF12826 Helix-hairpin-helix motif Amet_0942 PF03120 NAD-dependent DNA ligase OB-fold domain Amet_0942 PF01653 NAD-dependent DNA ligase adenylation domain Amet_0942 PF00533 BRCA1 C Terminus (BRCT) domain Amet_0945 PF02915 Rubrerythrin Amet_0947 PF02421 Ferrous iron transport protein B Amet_0947 PF07670 Nucleoside recognition Amet_0947 PF07664 Ferrous iron transport protein B C terminus Amet_0947 PF17910 FeoB cytosolic helical domain Amet_0952 PF00586 AIR synthase related protein, N-terminal domain Amet_0952 PF02769 AIR synthase related protein, C-terminal domain Amet_0953 PF01520 N-acetylmuramoyl-L-alanine amidase Amet_0953 PF04122 Putative cell wall binding repeat 2 Amet_0954 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Amet_0955 PF10646 Sporulation and spore germination Amet_0956 PF01138 3' exoribonuclease family, domain 1 Amet_0956 PF03725 3' exoribonuclease family, domain 2 Amet_0957 PF01725 Ham1 family Amet_0958 PF12850 Calcineurin-like phosphoesterase superfamily domain Amet_0966 PF07282 Putative transposase DNA-binding domain Amet_0966 PF01385 Probable transposase Amet_0966 PF12323 Helix-turn-helix domain Amet_0967 PF01966 HD domain Amet_0969 PF03480 Bacterial extracellular solute-binding protein, family 7 Amet_0971 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Amet_0972 PF13344 Haloacid dehalogenase-like hydrolase Amet_0973 PF04324 BFD-like [2Fe-2S] binding domain Amet_0973 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amet_0974 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amet_0974 PF04324 BFD-like [2Fe-2S] binding domain Amet_0976 PF02308 MgtC family Amet_0977 PF06874 Firmicute fructose-1,6-bisphosphatase Amet_0979 PF03466 LysR substrate binding domain Amet_0979 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amet_0981 PF01022 Bacterial regulatory protein, arsR family Amet_0983 PF01451 Low molecular weight phosphotyrosine protein phosphatase Amet_0984 PF01758 Sodium Bile acid symporter family Amet_0985 PF06953 Arsenical resistance operon trans-acting repressor ArsD Amet_0986 PF02374 Anion-transporting ATPase Amet_0987 PF02374 Anion-transporting ATPase Amet_0989 PF12804 MobA-like NTP transferase domain Amet_0990 PF00384 Molybdopterin oxidoreductase Amet_0990 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Amet_0990 PF01568 Molydopterin dinucleotide binding domain Amet_0990 PF10518 TAT (twin-arginine translocation) pathway signal sequence Amet_0991 PF13247 4Fe-4S dicluster domain Amet_0994 PF02416 mttA/Hcf106 family Amet_0995 PF00994 Probable molybdopterin binding domain Amet_0995 PF02464 Competence-damaged protein Amet_0996 PF03453 MoeA N-terminal region (domain I and II) Amet_0996 PF03454 MoeA C-terminal region (domain IV) Amet_0996 PF00994 Probable molybdopterin binding domain Amet_0998 PF02416 mttA/Hcf106 family Amet_0999 PF00902 Sec-independent protein translocase protein (TatC) Amet_1000 PF02634 FdhD/NarQ family Amet_1001 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Amet_1001 PF01138 3' exoribonuclease family, domain 1 Amet_1001 PF03725 3' exoribonuclease family, domain 2 Amet_1001 PF00575 S1 RNA binding domain Amet_1001 PF00013 KH domain Amet_1004 PF13538 UvrD-like helicase C-terminal domain Amet_1006 PF00013 KH domain Amet_1006 PF00575 S1 RNA binding domain Amet_1006 PF03725 3' exoribonuclease family, domain 2 Amet_1006 PF01138 3' exoribonuclease family, domain 1 Amet_1006 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Amet_1007 PF00293 NUDIX domain Amet_1010 PF00916 Sulfate permease family Amet_1010 PF01740 STAS domain Amet_1012 PF18698 Histidine kinase sensor domain Amet_1012 PF00512 His Kinase A (phospho-acceptor) domain Amet_1012 PF00672 HAMP domain Amet_1012 PF00989 PAS fold Amet_1012 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1013 PF00989 PAS fold Amet_1013 PF18415 Histidine kinase receptor ArcB trans-membrane domain Amet_1013 PF00512 His Kinase A (phospho-acceptor) domain Amet_1013 PF00072 Response regulator receiver domain Amet_1013 PF01627 Hpt domain Amet_1014 PF00072 Response regulator receiver domain Amet_1014 PF00486 Transcriptional regulatory protein, C terminal Amet_1016 PF07670 Nucleoside recognition Amet_1017 PF07670 Nucleoside recognition Amet_1018 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Amet_1018 PF01872 RibD C-terminal domain Amet_1019 PF00677 Lumazine binding domain Amet_1020 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Amet_1020 PF00925 GTP cyclohydrolase II Amet_1021 PF00885 6,7-dimethyl-8-ribityllumazine synthase Amet_1022 PF12849 PBP superfamily domain Amet_1023 PF00528 Binding-protein-dependent transport system inner membrane component Amet_1024 PF00005 ABC transporter Amet_1029 PF03816 Cell envelope-related transcriptional attenuator domain Amet_1030 PF13426 PAS domain Amet_1030 PF07228 Stage II sporulation protein E (SpoIIE) Amet_1032 PF00664 ABC transporter transmembrane region Amet_1032 PF03412 Peptidase C39 family Amet_1032 PF00005 ABC transporter Amet_1040 PF00196 Bacterial regulatory proteins, luxR family Amet_1040 PF17874 MalT-like TPR region Amet_1045 PF01695 IstB-like ATP binding protein Amet_1046 PF00665 Integrase core domain Amet_1056 PF13408 Recombinase zinc beta ribbon domain Amet_1056 PF00239 Resolvase, N terminal domain Amet_1056 PF07508 Recombinase Amet_1059 PF08367 Peptidase M16C associated Amet_1059 PF05193 Peptidase M16 inactive domain Amet_1059 PF00675 Insulinase (Peptidase family M16) Amet_1060 PF00196 Bacterial regulatory proteins, luxR family Amet_1060 PF00072 Response regulator receiver domain Amet_1063 PF08439 Oligopeptidase F Amet_1063 PF01432 Peptidase family M3 Amet_1064 PF00795 Carbon-nitrogen hydrolase Amet_1064 PF00583 Acetyltransferase (GNAT) family Amet_1065 PF00356 Bacterial regulatory proteins, lacI family Amet_1066 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Amet_1066 PF05698 Bacterial trigger factor protein (TF) C-terminus Amet_1066 PF05697 Bacterial trigger factor protein (TF) Amet_1067 PF00574 Clp protease Amet_1068 PF06689 ClpX C4-type zinc finger Amet_1068 PF07724 AAA domain (Cdc48 subfamily) Amet_1068 PF10431 C-terminal, D2-small domain, of ClpB protein Amet_1069 PF02417 Chromate transporter Amet_1070 PF02417 Chromate transporter Amet_1071 PF00004 ATPase family associated with various cellular activities (AAA) Amet_1071 PF05362 Lon protease (S16) C-terminal proteolytic domain Amet_1072 PF05362 Lon protease (S16) C-terminal proteolytic domain Amet_1072 PF00004 ATPase family associated with various cellular activities (AAA) Amet_1072 PF02190 ATP-dependent protease La (LON) substrate-binding domain Amet_1073 PF01926 50S ribosome-binding GTPase Amet_1074 PF01220 Dehydroquinase class II Amet_1075 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Amet_1075 PF01488 Shikimate / quinate 5-dehydrogenase Amet_1075 PF08501 Shikimate dehydrogenase substrate binding domain Amet_1078 PF02885 Glycosyl transferase family, helical bundle domain Amet_1078 PF00591 Glycosyl transferase family, a/b domain Amet_1078 PF00117 Glutamine amidotransferase class-I Amet_1079 PF00591 Glycosyl transferase family, a/b domain Amet_1079 PF02885 Glycosyl transferase family, helical bundle domain Amet_1080 PF00218 Indole-3-glycerol phosphate synthase Amet_1081 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Amet_1082 PF00291 Pyridoxal-phosphate dependent enzyme Amet_1083 PF00290 Tryptophan synthase alpha chain Amet_1084 PF00301 Rubredoxin Amet_1085 PF02073 Thermophilic metalloprotease (M29) Amet_1094 PF00403 Heavy-metal-associated domain Amet_1099 PF00486 Transcriptional regulatory protein, C terminal Amet_1099 PF00072 Response regulator receiver domain Amet_1100 PF00672 HAMP domain Amet_1100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1100 PF00512 His Kinase A (phospho-acceptor) domain Amet_1104 PF02541 Ppx/GppA phosphatase family Amet_1110 PF01047 MarR family Amet_1111 PF01554 MatE Amet_1116 PF00258 Flavodoxin Amet_1117 PF00528 Binding-protein-dependent transport system inner membrane component Amet_1119 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amet_1120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_1120 PF00005 ABC transporter Amet_1121 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_1121 PF00005 ABC transporter Amet_1122 PF01554 MatE Amet_1123 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Amet_1127 PF01869 BadF/BadG/BcrA/BcrD ATPase family Amet_1128 PF00005 ABC transporter Amet_1131 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amet_1132 PF00528 Binding-protein-dependent transport system inner membrane component Amet_1133 PF12911 N-terminal TM domain of oligopeptide transport permease C Amet_1133 PF00528 Binding-protein-dependent transport system inner membrane component Amet_1134 PF00005 ABC transporter Amet_1135 PF00005 ABC transporter Amet_1136 PF01554 MatE Amet_1137 PF06580 Histidine kinase Amet_1137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1137 PF00672 HAMP domain Amet_1137 PF02743 Cache domain Amet_1138 PF00072 Response regulator receiver domain Amet_1138 PF00196 Bacterial regulatory proteins, luxR family Amet_1139 PF00403 Heavy-metal-associated domain Amet_1141 PF01131 DNA topoisomerase Amet_1141 PF01751 Toprim domain Amet_1144 PF03334 Na+/H+ antiporter subunit Amet_1148 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Amet_1149 PF00361 Proton-conducting membrane transporter Amet_1150 PF00392 Bacterial regulatory proteins, gntR family Amet_1150 PF07702 UTRA domain Amet_1153 PF05845 Bacterial phosphonate metabolism protein (PhnH) Amet_1154 PF05861 Bacterial phosphonate metabolism protein (PhnI) Amet_1155 PF06007 Phosphonate metabolism protein PhnJ Amet_1156 PF00005 ABC transporter Amet_1157 PF07969 Amidohydrolase family Amet_1158 PF00005 ABC transporter Amet_1160 PF00528 Binding-protein-dependent transport system inner membrane component Amet_1161 PF00528 Binding-protein-dependent transport system inner membrane component Amet_1162 PF00005 ABC transporter Amet_1165 PF01966 HD domain Amet_1167 PF07694 5TMR of 5TMR-LYT Amet_1167 PF00990 Diguanylate cyclase, GGDEF domain Amet_1168 PF13091 PLD-like domain Amet_1168 PF13396 Phospholipase_D-nuclease N-terminal Amet_1171 PF01869 BadF/BadG/BcrA/BcrD ATPase family Amet_1173 PF00005 ABC transporter Amet_1174 PF00950 ABC 3 transport family Amet_1177 PF03063 Prismane/CO dehydrogenase family Amet_1179 PF01209 ubiE/COQ5 methyltransferase family Amet_1181 PF02583 Metal-sensitive transcriptional repressor Amet_1184 PF08645 Polynucleotide kinase 3 phosphatase Amet_1186 PF00188 Cysteine-rich secretory protein family Amet_1187 PF12729 Four helix bundle sensory module for signal transduction Amet_1187 PF00672 HAMP domain Amet_1187 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_1189 PF02548 Ketopantoate hydroxymethyltransferase Amet_1191 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Amet_1191 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Amet_1192 PF01546 Peptidase family M20/M25/M40 Amet_1192 PF07687 Peptidase dimerisation domain Amet_1193 PF09339 IclR helix-turn-helix domain Amet_1193 PF01614 Bacterial transcriptional regulator Amet_1194 PF01321 Creatinase/Prolidase N-terminal domain Amet_1194 PF00557 Metallopeptidase family M24 Amet_1198 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Amet_1199 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Amet_1199 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Amet_1200 PF00579 tRNA synthetases class I (W and Y) Amet_1201 PF00269 Small, acid-soluble spore proteins, alpha/beta type Amet_1205 PF02308 MgtC family Amet_1206 PF02390 Putative methyltransferase Amet_1211 PF01554 MatE Amet_1212 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Amet_1213 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Amet_1213 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Amet_1213 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Amet_1220 PF17783 CvfB-like winged helix domain Amet_1220 PF13509 S1 domain Amet_1223 PF00550 Phosphopantetheine attachment site Amet_1224 PF02915 Rubrerythrin Amet_1225 PF02690 Na+/Pi-cotransporter Amet_1227 PF08245 Mur ligase middle domain Amet_1227 PF08443 RimK-like ATP-grasp domain Amet_1227 PF02875 Mur ligase family, glutamate ligase domain Amet_1230 PF03773 Predicted permease Amet_1234 PF02424 ApbE family Amet_1236 PF01476 LysM domain Amet_1236 PF03734 L,D-transpeptidase catalytic domain Amet_1237 PF01255 Putative undecaprenyl diphosphate synthase Amet_1239 PF04205 FMN-binding domain Amet_1239 PF00890 FAD binding domain Amet_1239 PF03358 NADPH-dependent FMN reductase Amet_1240 PF00005 ABC transporter Amet_1241 PF00528 Binding-protein-dependent transport system inner membrane component Amet_1242 PF00497 Bacterial extracellular solute-binding proteins, family 3 Amet_1243 PF02308 MgtC family Amet_1247 PF02581 Thiamine monophosphate synthase Amet_1248 PF02110 Hydroxyethylthiazole kinase family Amet_1249 PF08543 Phosphomethylpyrimidine kinase Amet_1249 PF02581 Thiamine monophosphate synthase Amet_1251 PF00676 Dehydrogenase E1 component Amet_1252 PF02780 Transketolase, C-terminal domain Amet_1252 PF02779 Transketolase, pyrimidine binding domain Amet_1253 PF02817 e3 binding domain Amet_1253 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Amet_1253 PF00364 Biotin-requiring enzyme Amet_1254 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amet_1254 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Amet_1255 PF07228 Stage II sporulation protein E (SpoIIE) Amet_1255 PF13426 PAS domain Amet_1256 PF01966 HD domain Amet_1257 PF03123 CAT RNA binding domain Amet_1257 PF00874 PRD domain Amet_1258 PF00381 PTS HPr component phosphorylation site Amet_1259 PF02896 PEP-utilising enzyme, TIM barrel domain Amet_1259 PF00391 PEP-utilising enzyme, mobile domain Amet_1259 PF05524 PEP-utilising enzyme, N-terminal Amet_1260 PF01614 Bacterial transcriptional regulator Amet_1260 PF09339 IclR helix-turn-helix domain Amet_1261 PF01081 KDPG and KHG aldolase Amet_1262 PF00294 pfkB family carbohydrate kinase Amet_1263 PF00392 Bacterial regulatory proteins, gntR family Amet_1263 PF07729 FCD domain Amet_1264 PF07702 UTRA domain Amet_1264 PF00392 Bacterial regulatory proteins, gntR family Amet_1266 PF03401 Tripartite tricarboxylate transporter family receptor Amet_1267 PF01970 Tripartite tricarboxylate transporter TctA family Amet_1269 PF03951 Glutamine synthetase, beta-Grasp domain Amet_1269 PF00120 Glutamine synthetase, catalytic domain Amet_1273 PF09335 SNARE associated Golgi protein Amet_1274 PF00072 Response regulator receiver domain Amet_1275 PF13426 PAS domain Amet_1275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1275 PF00512 His Kinase A (phospho-acceptor) domain Amet_1275 PF08448 PAS fold Amet_1275 PF00072 Response regulator receiver domain Amet_1276 PF00528 Binding-protein-dependent transport system inner membrane component Amet_1278 PF18698 Histidine kinase sensor domain Amet_1278 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1278 PF00672 HAMP domain Amet_1278 PF00989 PAS fold Amet_1278 PF00512 His Kinase A (phospho-acceptor) domain Amet_1282 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Amet_1283 PF03845 Spore germination protein Amet_1284 PF05504 Spore germination B3/ GerAC like, C-terminal Amet_1285 PF03323 Bacillus/Clostridium GerA spore germination protein Amet_1286 PF02796 Helix-turn-helix domain of resolvase Amet_1286 PF00239 Resolvase, N terminal domain Amet_1288 PF03480 Bacterial extracellular solute-binding protein, family 7 Amet_1289 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Amet_1289 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Amet_1290 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Amet_1291 PF02614 Glucuronate isomerase Amet_1292 PF03786 D-mannonate dehydratase (UxuA) Amet_1293 PF01232 Mannitol dehydrogenase Rossmann domain Amet_1293 PF08125 Mannitol dehydrogenase C-terminal domain Amet_1294 PF07729 FCD domain Amet_1294 PF00392 Bacterial regulatory proteins, gntR family Amet_1295 PF00005 ABC transporter Amet_1296 PF00313 'Cold-shock' DNA-binding domain Amet_1298 PF00753 Metallo-beta-lactamase superfamily Amet_1298 PF03772 Competence protein Amet_1298 PF13567 Domain of unknown function (DUF4131) Amet_1301 PF01915 Glycosyl hydrolase family 3 C-terminal domain Amet_1301 PF00933 Glycosyl hydrolase family 3 N terminal domain Amet_1302 PF03951 Glutamine synthetase, beta-Grasp domain Amet_1302 PF00120 Glutamine synthetase, catalytic domain Amet_1303 PF00072 Response regulator receiver domain Amet_1304 PF00390 Malic enzyme, N-terminal domain Amet_1304 PF03949 Malic enzyme, NAD binding domain Amet_1305 PF00919 Uncharacterized protein family UPF0004 Amet_1305 PF01938 TRAM domain Amet_1305 PF04055 Radical SAM superfamily Amet_1317 PF03023 Lipid II flippase MurJ Amet_1319 PF18324 Hypothetical protein TT1725 Amet_1319 PF00180 Isocitrate/isopropylmalate dehydrogenase Amet_1320 PF00330 Aconitase family (aconitate hydratase) Amet_1321 PF00682 HMGL-like Amet_1323 PF00392 Bacterial regulatory proteins, gntR family Amet_1324 PF00005 ABC transporter Amet_1326 PF00005 ABC transporter Amet_1327 PF00528 Binding-protein-dependent transport system inner membrane component Amet_1330 PF01568 Molydopterin dinucleotide binding domain Amet_1330 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Amet_1330 PF00384 Molybdopterin oxidoreductase Amet_1331 PF09163 Formate dehydrogenase N, transmembrane Amet_1331 PF12800 4Fe-4S binding domain Amet_1331 PF13247 4Fe-4S dicluster domain Amet_1332 PF12798 4Fe-4S binding domain Amet_1332 PF00037 4Fe-4S binding domain Amet_1337 PF13686 DsrE/DsrF/DrsH-like family Amet_1339 PF00440 Bacterial regulatory proteins, tetR family Amet_1341 PF00873 AcrB/AcrD/AcrF family Amet_1343 PF00571 CBS domain Amet_1343 PF03471 Transporter associated domain Amet_1343 PF01595 Cyclin M transmembrane N-terminal domain Amet_1345 PF00266 Aminotransferase class-V Amet_1346 PF00210 Ferritin-like domain Amet_1348 PF00890 FAD binding domain Amet_1348 PF14537 Cytochrome c3 Amet_1349 PF00294 pfkB family carbohydrate kinase Amet_1354 PF01571 Aminomethyltransferase folate-binding domain Amet_1354 PF08669 Glycine cleavage T-protein C-terminal barrel domain Amet_1355 PF01597 Glycine cleavage H-protein Amet_1356 PF02347 Glycine cleavage system P-protein Amet_1357 PF02347 Glycine cleavage system P-protein Amet_1360 PF07136 Protein of unknown function (DUF1385) Amet_1364 PF00269 Small, acid-soluble spore proteins, alpha/beta type Amet_1365 PF01098 Cell cycle protein Amet_1366 PF01769 Divalent cation transporter Amet_1366 PF03448 MgtE intracellular N domain Amet_1366 PF00571 CBS domain Amet_1367 PF07486 Cell Wall Hydrolase Amet_1367 PF01471 Putative peptidoglycan binding domain Amet_1368 PF14620 YpeB sporulation Amet_1372 PF01609 Transposase DDE domain Amet_1375 PF00342 Phosphoglucose isomerase Amet_1376 PF01177 Asp/Glu/Hydantoin racemase Amet_1377 PF13492 GAF domain Amet_1377 PF07694 5TMR of 5TMR-LYT Amet_1377 PF06580 Histidine kinase Amet_1377 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1378 PF04397 LytTr DNA-binding domain Amet_1378 PF00072 Response regulator receiver domain Amet_1380 PF13722 5TM C-terminal transporter carbon starvation CstA Amet_1380 PF02554 Carbon starvation protein CstA Amet_1382 PF01546 Peptidase family M20/M25/M40 Amet_1383 PF14667 Polysaccharide biosynthesis C-terminal domain Amet_1383 PF01943 Polysaccharide biosynthesis protein Amet_1394 PF04205 FMN-binding domain Amet_1394 PF00890 FAD binding domain Amet_1395 PF00145 C-5 cytosine-specific DNA methylase Amet_1395 PF13411 MerR HTH family regulatory protein Amet_1400 PF01066 CDP-alcohol phosphatidyltransferase Amet_1402 PF08264 Anticodon-binding domain of tRNA Amet_1402 PF00133 tRNA synthetases class I (I, L, M and V) Amet_1402 PF10458 Valyl tRNA synthetase tRNA binding arm Amet_1403 PF08245 Mur ligase middle domain Amet_1403 PF02875 Mur ligase family, glutamate ligase domain Amet_1404 PF01545 Cation efflux family Amet_1404 PF16916 Dimerisation domain of Zinc Transporter Amet_1405 PF00589 Phage integrase family Amet_1405 PF13495 Phage integrase, N-terminal SAM-like domain Amet_1410 PF07508 Recombinase Amet_1410 PF13408 Recombinase zinc beta ribbon domain Amet_1410 PF00239 Resolvase, N terminal domain Amet_1411 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Amet_1411 PF01348 Type II intron maturase Amet_1416 PF08331 Domain of unknown function (DUF1730) Amet_1421 PF01965 DJ-1/PfpI family Amet_1422 PF00805 Pentapeptide repeats (8 copies) Amet_1423 PF13302 Acetyltransferase (GNAT) domain Amet_1426 PF04294 VanW like protein Amet_1428 PF12833 Helix-turn-helix domain Amet_1431 PF00144 Beta-lactamase Amet_1435 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Amet_1436 PF13302 Acetyltransferase (GNAT) domain Amet_1440 PF00398 Ribosomal RNA adenine dimethylase Amet_1441 PF08713 DNA alkylation repair enzyme Amet_1442 PF01553 Acyltransferase Amet_1446 PF03063 Prismane/CO dehydrogenase family Amet_1447 PF00582 Universal stress protein family Amet_1448 PF03707 Bacterial signalling protein N terminal repeat Amet_1448 PF00990 Diguanylate cyclase, GGDEF domain Amet_1448 PF00563 EAL domain Amet_1449 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_1449 PF00672 HAMP domain Amet_1449 PF02743 Cache domain Amet_1450 PF02678 Pirin Amet_1450 PF05726 Pirin C-terminal cupin domain Amet_1451 PF16326 ABC transporter C-terminal domain Amet_1451 PF12848 ABC transporter Amet_1451 PF00005 ABC transporter Amet_1453 PF01965 DJ-1/PfpI family Amet_1457 PF00072 Response regulator receiver domain Amet_1457 PF00486 Transcriptional regulatory protein, C terminal Amet_1458 PF00672 HAMP domain Amet_1458 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1458 PF00512 His Kinase A (phospho-acceptor) domain Amet_1458 PF13426 PAS domain Amet_1459 PF00005 ABC transporter Amet_1460 PF02687 FtsX-like permease family Amet_1461 PF00578 AhpC/TSA family Amet_1461 PF10417 C-terminal domain of 1-Cys peroxiredoxin Amet_1462 PF00578 AhpC/TSA family Amet_1462 PF10417 C-terminal domain of 1-Cys peroxiredoxin Amet_1463 PF02001 Protein of unknown function DUF134 Amet_1469 PF02146 Sir2 family Amet_1471 PF00665 Integrase core domain Amet_1472 PF01695 IstB-like ATP binding protein Amet_1474 PF01965 DJ-1/PfpI family Amet_1474 PF12833 Helix-turn-helix domain Amet_1479 PF01047 MarR family Amet_1480 PF02374 Anion-transporting ATPase Amet_1480 PF17886 HSP20-like domain found in ArsA Amet_1481 PF00005 ABC transporter Amet_1486 PF01520 N-acetylmuramoyl-L-alanine amidase Amet_1486 PF05036 Sporulation related domain Amet_1491 PF04235 Protein of unknown function (DUF418) Amet_1497 PF00578 AhpC/TSA family Amet_1501 PF13732 Domain of unknown function (DUF4162) Amet_1501 PF00005 ABC transporter Amet_1502 PF13977 BetI-type transcriptional repressor, C-terminal Amet_1502 PF00440 Bacterial regulatory proteins, tetR family Amet_1504 PF06445 GyrI-like small molecule binding domain Amet_1504 PF12833 Helix-turn-helix domain Amet_1505 PF00889 Elongation factor TS Amet_1506 PF00486 Transcriptional regulatory protein, C terminal Amet_1506 PF00072 Response regulator receiver domain Amet_1507 PF00512 His Kinase A (phospho-acceptor) domain Amet_1507 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1507 PF18719 ArlS sensor domain Amet_1510 PF02629 CoA binding domain Amet_1510 PF06971 Putative DNA-binding protein N-terminus Amet_1511 PF01938 TRAM domain Amet_1511 PF05958 tRNA (Uracil-5-)-methyltransferase Amet_1512 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amet_1513 PF00528 Binding-protein-dependent transport system inner membrane component Amet_1514 PF12911 N-terminal TM domain of oligopeptide transport permease C Amet_1514 PF00528 Binding-protein-dependent transport system inner membrane component Amet_1515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_1515 PF00005 ABC transporter Amet_1516 PF00583 Acetyltransferase (GNAT) family Amet_1518 PF00486 Transcriptional regulatory protein, C terminal Amet_1518 PF00072 Response regulator receiver domain Amet_1519 PF00512 His Kinase A (phospho-acceptor) domain Amet_1519 PF00989 PAS fold Amet_1519 PF16736 Single Cache-like Amet_1519 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1522 PF00873 AcrB/AcrD/AcrF family Amet_1525 PF00391 PEP-utilising enzyme, mobile domain Amet_1525 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Amet_1526 PF07690 Major Facilitator Superfamily Amet_1529 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Amet_1536 PF00005 ABC transporter Amet_1540 PF04073 Aminoacyl-tRNA editing domain Amet_1545 PF00005 ABC transporter Amet_1545 PF00664 ABC transporter transmembrane region Amet_1547 PF00155 Aminotransferase class I and II Amet_1547 PF00392 Bacterial regulatory proteins, gntR family Amet_1551 PF04205 FMN-binding domain Amet_1551 PF00890 FAD binding domain Amet_1551 PF03358 NADPH-dependent FMN reductase Amet_1553 PF12848 ABC transporter Amet_1553 PF16326 ABC transporter C-terminal domain Amet_1553 PF00005 ABC transporter Amet_1554 PF02687 FtsX-like permease family Amet_1554 PF12704 MacB-like periplasmic core domain Amet_1555 PF00005 ABC transporter Amet_1556 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Amet_1557 PF07730 Histidine kinase Amet_1559 PF00196 Bacterial regulatory proteins, luxR family Amet_1559 PF00072 Response regulator receiver domain Amet_1560 PF04235 Protein of unknown function (DUF418) Amet_1561 PF00144 Beta-lactamase Amet_1565 PF03551 Transcriptional regulator PadR-like family Amet_1570 PF00141 Peroxidase Amet_1573 PF00072 Response regulator receiver domain Amet_1573 PF00990 Diguanylate cyclase, GGDEF domain Amet_1575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_1575 PF00672 HAMP domain Amet_1575 PF02743 Cache domain Amet_1579 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Amet_1580 PF01613 Flavin reductase like domain Amet_1584 PF00072 Response regulator receiver domain Amet_1584 PF00196 Bacterial regulatory proteins, luxR family Amet_1586 PF03649 Uncharacterised protein family (UPF0014) Amet_1587 PF00005 ABC transporter Amet_1587 PF09383 NIL domain Amet_1588 PF03551 Transcriptional regulator PadR-like family Amet_1592 PF00269 Small, acid-soluble spore proteins, alpha/beta type Amet_1593 PF02899 Phage integrase, N-terminal SAM-like domain Amet_1593 PF00589 Phage integrase family Amet_1601 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Amet_1601 PF01348 Type II intron maturase Amet_1602 PF00239 Resolvase, N terminal domain Amet_1602 PF13408 Recombinase zinc beta ribbon domain Amet_1602 PF07508 Recombinase Amet_1607 PF02384 N-6 DNA Methylase Amet_1607 PF12161 HsdM N-terminal domain Amet_1609 PF18766 SWI2/SNF2 ATPase Amet_1609 PF12008 Type I restriction and modification enzyme - subunit R C terminal Amet_1609 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Amet_1612 PF00872 Transposase, Mutator family Amet_1613 PF08331 Domain of unknown function (DUF1730) Amet_1615 PF02690 Na+/Pi-cotransporter Amet_1616 PF00155 Aminotransferase class I and II Amet_1617 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain Amet_1617 PF01522 Polysaccharide deacetylase Amet_1618 PF02875 Mur ligase family, glutamate ligase domain Amet_1618 PF08245 Mur ligase middle domain Amet_1618 PF01225 Mur ligase family, catalytic domain Amet_1620 PF13185 GAF domain Amet_1622 PF01546 Peptidase family M20/M25/M40 Amet_1622 PF07687 Peptidase dimerisation domain Amet_1624 PF13091 PLD-like domain Amet_1624 PF13396 Phospholipase_D-nuclease N-terminal Amet_1626 PF13649 Methyltransferase domain Amet_1627 PF00313 'Cold-shock' DNA-binding domain Amet_1628 PF01430 Hsp33 protein Amet_1630 PF04286 Protein of unknown function (DUF445) Amet_1632 PF01434 Peptidase family M41 Amet_1632 PF17862 AAA+ lid domain Amet_1632 PF00004 ATPase family associated with various cellular activities (AAA) Amet_1633 PF00707 Translation initiation factor IF-3, C-terminal domain Amet_1633 PF05198 Translation initiation factor IF-3, N-terminal domain Amet_1634 PF01632 Ribosomal protein L35 Amet_1635 PF00453 Ribosomal protein L20 Amet_1636 PF02386 Cation transport protein Amet_1637 PF02080 TrkA-C domain Amet_1637 PF02254 TrkA-N domain Amet_1638 PF08032 RNA 2'-O ribose methyltransferase substrate binding Amet_1638 PF00588 SpoU rRNA Methylase family Amet_1639 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Amet_1639 PF01409 tRNA synthetases class II core domain (F) Amet_1640 PF03147 Ferredoxin-fold anticodon binding domain Amet_1640 PF03483 B3/4 domain Amet_1640 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Amet_1640 PF03484 tRNA synthetase B5 domain Amet_1640 PF01588 Putative tRNA binding domain Amet_1641 PF05164 Cell division protein ZapA Amet_1642 PF01136 Peptidase family U32 Amet_1642 PF12392 Collagenase Amet_1643 PF01325 Iron dependent repressor, N-terminal DNA binding domain Amet_1643 PF02742 Iron dependent repressor, metal binding and dimerisation domain Amet_1644 PF00005 ABC transporter Amet_1645 PF00950 ABC 3 transport family Amet_1646 PF01297 Zinc-uptake complex component A periplasmic Amet_1648 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Amet_1648 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Amet_1649 PF00291 Pyridoxal-phosphate dependent enzyme Amet_1650 PF00266 Aminotransferase class-V Amet_1653 PF00005 ABC transporter Amet_1654 PF09335 SNARE associated Golgi protein Amet_1656 PF01541 GIY-YIG catalytic domain Amet_1657 PF00465 Iron-containing alcohol dehydrogenase Amet_1659 PF00881 Nitroreductase family Amet_1661 PF04060 Putative Fe-S cluster Amet_1667 PF01867 CRISPR associated protein Cas1 Amet_1668 PF09827 CRISPR associated protein Cas2 Amet_1670 PF00056 lactate/malate dehydrogenase, NAD binding domain Amet_1670 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Amet_1671 PF01467 Cytidylyltransferase-like Amet_1673 PF00497 Bacterial extracellular solute-binding proteins, family 3 Amet_1674 PF00528 Binding-protein-dependent transport system inner membrane component Amet_1675 PF00005 ABC transporter Amet_1676 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Amet_1676 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Amet_1676 PF10371 Domain of unknown function Amet_1676 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Amet_1676 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Amet_1677 PF02446 4-alpha-glucanotransferase Amet_1678 PF00343 Carbohydrate phosphorylase Amet_1681 PF04542 Sigma-70 region 2 Amet_1681 PF08281 Sigma-70, region 4 Amet_1684 PF00860 Permease family Amet_1688 PF00005 ABC transporter Amet_1691 PF00486 Transcriptional regulatory protein, C terminal Amet_1691 PF00072 Response regulator receiver domain Amet_1692 PF00512 His Kinase A (phospho-acceptor) domain Amet_1692 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1694 PF04060 Putative Fe-S cluster Amet_1695 PF00149 Calcineurin-like phosphoesterase Amet_1697 PF00258 Flavodoxin Amet_1697 PF00753 Metallo-beta-lactamase superfamily Amet_1698 PF00583 Acetyltransferase (GNAT) family Amet_1700 PF08240 Alcohol dehydrogenase GroES-like domain Amet_1700 PF00107 Zinc-binding dehydrogenase Amet_1701 PF08367 Peptidase M16C associated Amet_1701 PF00675 Insulinase (Peptidase family M16) Amet_1701 PF05193 Peptidase M16 inactive domain Amet_1702 PF07085 DRTGG domain Amet_1702 PF01368 DHH family Amet_1702 PF00571 CBS domain Amet_1702 PF02833 DHHA2 domain Amet_1704 PF00994 Probable molybdopterin binding domain Amet_1704 PF18146 Damage-inducible protein CinA KH domain Amet_1704 PF02464 Competence-damaged protein Amet_1705 PF11871 Domain of unknown function (DUF3391) Amet_1705 PF01966 HD domain Amet_1706 PF01370 NAD dependent epimerase/dehydratase family Amet_1707 PF01479 S4 domain Amet_1707 PF00163 Ribosomal protein S4/S9 N-terminal domain Amet_1711 PF01522 Polysaccharide deacetylase Amet_1712 PF01713 Smr domain Amet_1712 PF00488 MutS domain V Amet_1713 PF04463 Protein of unknown function (DUF523) Amet_1714 PF00750 tRNA synthetases class I (R) Amet_1714 PF03485 Arginyl tRNA synthetase N terminal domain Amet_1714 PF05746 DALR anticodon binding domain Amet_1715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_1715 PF02743 Cache domain Amet_1715 PF00672 HAMP domain Amet_1718 PF01554 MatE Amet_1722 PF02310 B12 binding domain Amet_1722 PF04055 Radical SAM superfamily Amet_1726 PF01515 Phosphate acetyl/butaryl transferase Amet_1732 PF00149 Calcineurin-like phosphoesterase Amet_1732 PF02872 5'-nucleotidase, C-terminal domain Amet_1733 PF00005 ABC transporter Amet_1733 PF17912 MalK OB fold domain Amet_1733 PF03459 TOBE domain Amet_1734 PF00528 Binding-protein-dependent transport system inner membrane component Amet_1735 PF00528 Binding-protein-dependent transport system inner membrane component Amet_1736 PF13416 Bacterial extracellular solute-binding protein Amet_1737 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Amet_1737 PF01138 3' exoribonuclease family, domain 1 Amet_1737 PF03725 3' exoribonuclease family, domain 2 Amet_1737 PF00013 KH domain Amet_1737 PF00575 S1 RNA binding domain Amet_1746 PF00717 Peptidase S24-like Amet_1746 PF01726 LexA DNA binding domain Amet_1755 PF13519 von Willebrand factor type A domain Amet_1757 PF01695 IstB-like ATP binding protein Amet_1758 PF08281 Sigma-70, region 4 Amet_1758 PF00665 Integrase core domain Amet_1760 PF08241 Methyltransferase domain Amet_1761 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Amet_1765 PF00665 Integrase core domain Amet_1766 PF01695 IstB-like ATP binding protein Amet_1769 PF11799 impB/mucB/samB family C-terminal domain Amet_1769 PF00817 impB/mucB/samB family Amet_1770 PF00072 Response regulator receiver domain Amet_1770 PF00486 Transcriptional regulatory protein, C terminal Amet_1771 PF18698 Histidine kinase sensor domain Amet_1771 PF00672 HAMP domain Amet_1771 PF00989 PAS fold Amet_1771 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1771 PF00512 His Kinase A (phospho-acceptor) domain Amet_1773 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) Amet_1773 PF07581 The GLUG motif Amet_1780 PF00106 short chain dehydrogenase Amet_1782 PF00149 Calcineurin-like phosphoesterase Amet_1783 PF00398 Ribosomal RNA adenine dimethylase Amet_1798 PF08281 Sigma-70, region 4 Amet_1798 PF04542 Sigma-70 region 2 Amet_1802 PF04542 Sigma-70 region 2 Amet_1802 PF08281 Sigma-70, region 4 Amet_1827 PF01022 Bacterial regulatory protein, arsR family Amet_1828 PF01758 Sodium Bile acid symporter family Amet_1829 PF06953 Arsenical resistance operon trans-acting repressor ArsD Amet_1830 PF02374 Anion-transporting ATPase Amet_1831 PF02374 Anion-transporting ATPase Amet_1833 PF07722 Peptidase C26 Amet_1838 PF00266 Aminotransferase class-V Amet_1841 PF01022 Bacterial regulatory protein, arsR family Amet_1846 PF00005 ABC transporter Amet_1851 PF04542 Sigma-70 region 2 Amet_1851 PF08281 Sigma-70, region 4 Amet_1861 PF00753 Metallo-beta-lactamase superfamily Amet_1869 PF01541 GIY-YIG catalytic domain Amet_1873 PF01047 MarR family Amet_1879 PF00005 ABC transporter Amet_1879 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_1880 PF00005 ABC transporter Amet_1880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_1881 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amet_1882 PF01244 Membrane dipeptidase (Peptidase family M19) Amet_1883 PF01979 Amidohydrolase family Amet_1884 PF03576 Peptidase family S58 Amet_1886 PF01520 N-acetylmuramoyl-L-alanine amidase Amet_1886 PF05036 Sporulation related domain Amet_1888 PF01609 Transposase DDE domain Amet_1891 PF04542 Sigma-70 region 2 Amet_1891 PF08281 Sigma-70, region 4 Amet_1897 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Amet_1897 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Amet_1901 PF01381 Helix-turn-helix Amet_1902 PF00132 Bacterial transferase hexapeptide (six repeats) Amet_1903 PF00005 ABC transporter Amet_1905 PF01636 Phosphotransferase enzyme family Amet_1907 PF00561 alpha/beta hydrolase fold Amet_1908 PF00440 Bacterial regulatory proteins, tetR family Amet_1908 PF17932 Tetracyclin repressor-like, C-terminal domain Amet_1911 PF12833 Helix-turn-helix domain Amet_1913 PF00440 Bacterial regulatory proteins, tetR family Amet_1913 PF17932 Tetracyclin repressor-like, C-terminal domain Amet_1914 PF00391 PEP-utilising enzyme, mobile domain Amet_1914 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Amet_1915 PF00486 Transcriptional regulatory protein, C terminal Amet_1915 PF00072 Response regulator receiver domain Amet_1916 PF00672 HAMP domain Amet_1916 PF00512 His Kinase A (phospho-acceptor) domain Amet_1916 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1917 PF00486 Transcriptional regulatory protein, C terminal Amet_1917 PF00072 Response regulator receiver domain Amet_1918 PF00672 HAMP domain Amet_1918 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1918 PF00512 His Kinase A (phospho-acceptor) domain Amet_1919 PF00005 ABC transporter Amet_1927 PF09077 Mu B transposition protein, C terminal Amet_1927 PF13401 AAA domain Amet_1936 PF04542 Sigma-70 region 2 Amet_1936 PF04545 Sigma-70, region 4 Amet_1945 PF01471 Putative peptidoglycan binding domain Amet_1945 PF01520 N-acetylmuramoyl-L-alanine amidase Amet_1980 PF03062 MBOAT, membrane-bound O-acyltransferase family Amet_1982 PF01520 N-acetylmuramoyl-L-alanine amidase Amet_1983 PF03358 NADPH-dependent FMN reductase Amet_1986 PF01228 Glycine radical Amet_1986 PF02901 Pyruvate formate lyase-like Amet_1987 PF04055 Radical SAM superfamily Amet_1992 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_1992 PF00512 His Kinase A (phospho-acceptor) domain Amet_1993 PF00072 Response regulator receiver domain Amet_1993 PF00486 Transcriptional regulatory protein, C terminal Amet_2002 PF00005 ABC transporter Amet_2005 PF00528 Binding-protein-dependent transport system inner membrane component Amet_2006 PF00528 Binding-protein-dependent transport system inner membrane component Amet_2006 PF12911 N-terminal TM domain of oligopeptide transport permease C Amet_2007 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amet_2008 PF00005 ABC transporter Amet_2008 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_2009 PF00005 ABC transporter Amet_2009 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_2010 PF08241 Methyltransferase domain Amet_2011 PF00266 Aminotransferase class-V Amet_2013 PF01022 Bacterial regulatory protein, arsR family Amet_2016 PF03063 Prismane/CO dehydrogenase family Amet_2017 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Amet_2019 PF04961 Formiminotransferase-cyclodeaminase Amet_2020 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Amet_2020 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Amet_2023 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Amet_2023 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amet_2025 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit Amet_2026 PF04060 Putative Fe-S cluster Amet_2026 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit Amet_2027 PF00809 Pterin binding enzyme Amet_2028 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit Amet_2028 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain Amet_2035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amet_2036 PF00528 Binding-protein-dependent transport system inner membrane component Amet_2037 PF00528 Binding-protein-dependent transport system inner membrane component Amet_2037 PF12911 N-terminal TM domain of oligopeptide transport permease C Amet_2038 PF00005 ABC transporter Amet_2038 PF02687 FtsX-like permease family Amet_2038 PF12704 MacB-like periplasmic core domain Amet_2039 PF00005 ABC transporter Amet_2041 PF01370 NAD dependent epimerase/dehydratase family Amet_2042 PF01551 Peptidase family M23 Amet_2042 PF10145 Phage-related minor tail protein Amet_2042 PF01464 Transglycosylase SLT domain Amet_2045 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amet_2046 PF00528 Binding-protein-dependent transport system inner membrane component Amet_2048 PF00005 ABC transporter Amet_2048 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_2049 PF00005 ABC transporter Amet_2049 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_2054 PF02222 ATP-grasp domain Amet_2055 PF02655 ATP-grasp domain Amet_2055 PF00206 Lyase Amet_2056 PF01554 MatE Amet_2058 PF10145 Phage-related minor tail protein Amet_2058 PF01551 Peptidase family M23 Amet_2058 PF01464 Transglycosylase SLT domain Amet_2059 PF07883 Cupin domain Amet_2060 PF00158 Sigma-54 interaction domain Amet_2060 PF02954 Bacterial regulatory protein, Fis family Amet_2060 PF00989 PAS fold Amet_2061 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amet_2062 PF00528 Binding-protein-dependent transport system inner membrane component Amet_2064 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_2064 PF00005 ABC transporter Amet_2065 PF00005 ABC transporter Amet_2065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_2066 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain Amet_2066 PF00877 NlpC/P60 family Amet_2067 PF07969 Amidohydrolase family Amet_2068 PF04951 D-aminopeptidase Amet_2069 PF00072 Response regulator receiver domain Amet_2069 PF01627 Hpt domain Amet_2069 PF00512 His Kinase A (phospho-acceptor) domain Amet_2069 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_2070 PF00440 Bacterial regulatory proteins, tetR family Amet_2072 PF01047 MarR family Amet_2075 PF02653 Branched-chain amino acid transport system / permease component Amet_2076 PF11862 Domain of unknown function (DUF3382) Amet_2076 PF02653 Branched-chain amino acid transport system / permease component Amet_2077 PF00005 ABC transporter Amet_2077 PF12399 Branched-chain amino acid ATP-binding cassette transporter Amet_2078 PF00005 ABC transporter Amet_2079 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Amet_2080 PF00795 Carbon-nitrogen hydrolase Amet_2082 PF01381 Helix-turn-helix Amet_2085 PF00809 Pterin binding enzyme Amet_2086 PF02607 B12 binding domain Amet_2086 PF02310 B12 binding domain Amet_2093 PF02607 B12 binding domain Amet_2093 PF02310 B12 binding domain Amet_2097 PF02607 B12 binding domain Amet_2097 PF02310 B12 binding domain Amet_2098 PF00392 Bacterial regulatory proteins, gntR family Amet_2098 PF07702 UTRA domain Amet_2104 PF13443 Cro/C1-type HTH DNA-binding domain Amet_2109 PF13443 Cro/C1-type HTH DNA-binding domain Amet_2113 PF01695 IstB-like ATP binding protein Amet_2114 PF00665 Integrase core domain Amet_2119 PF01434 Peptidase family M41 Amet_2119 PF00004 ATPase family associated with various cellular activities (AAA) Amet_2119 PF17862 AAA+ lid domain Amet_2120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Amet_2122 PF00082 Subtilase family Amet_2144 PF01000 RNA polymerase Rpb3/RpoA insert domain Amet_2144 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Amet_2144 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Amet_2149 PF08281 Sigma-70, region 4 Amet_2149 PF04542 Sigma-70 region 2 Amet_2155 PF00924 Mechanosensitive ion channel Amet_2156 PF01966 HD domain Amet_2157 PF00117 Glutamine amidotransferase class-I Amet_2159 PF01063 Amino-transferase class IV Amet_2161 PF00809 Pterin binding enzyme Amet_2162 PF02152 Dihydroneopterin aldolase Amet_2163 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Amet_2164 PF18152 DAHP synthase ferredoxin-like domain Amet_2164 PF00793 DAHP synthetase I family Amet_2166 PF08141 Small acid-soluble spore protein H family Amet_2170 PF15975 Flotillin Amet_2170 PF01145 SPFH domain / Band 7 family Amet_2171 PF03129 Anticodon binding domain Amet_2171 PF13393 Histidyl-tRNA synthetase Amet_2172 PF00990 Diguanylate cyclase, GGDEF domain Amet_2172 PF07694 5TMR of 5TMR-LYT Amet_2173 PF01871 AMMECR1 Amet_2173 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Amet_2175 PF00005 ABC transporter Amet_2175 PF00664 ABC transporter transmembrane region Amet_2176 PF00664 ABC transporter transmembrane region Amet_2176 PF00005 ABC transporter Amet_2179 PF14849 YidC periplasmic domain Amet_2179 PF02096 60Kd inner membrane protein Amet_2180 PF01594 AI-2E family transporter Amet_2181 PF04607 Region found in RelA / SpoT proteins Amet_2182 PF00027 Cyclic nucleotide-binding domain Amet_2182 PF00520 Ion transport protein Amet_2183 PF00905 Penicillin binding protein transpeptidase domain Amet_2183 PF00912 Transglycosylase Amet_2193 PF18395 Cas3 C-terminal domain Amet_2193 PF00270 DEAD/DEAH box helicase Amet_2193 PF18019 HD domain Amet_2195 PF01867 CRISPR associated protein Cas1 Amet_2196 PF09827 CRISPR associated protein Cas2 Amet_2202 PF13361 UvrD-like helicase C-terminal domain Amet_2202 PF00580 UvrD/REP helicase N-terminal domain Amet_2203 PF00710 Asparaginase, N-terminal Amet_2203 PF17763 Glutaminase/Asparaginase C-terminal domain Amet_2205 PF00266 Aminotransferase class-V Amet_2206 PF02568 Thiamine biosynthesis protein (ThiI) Amet_2206 PF02926 THUMP domain Amet_2207 PF01967 MoaC family Amet_2208 PF00994 Probable molybdopterin binding domain Amet_2209 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV Amet_2210 PF04055 Radical SAM superfamily Amet_2211 PF01228 Glycine radical Amet_2211 PF02901 Pyruvate formate lyase-like Amet_2212 PF01740 STAS domain Amet_2213 PF13581 Histidine kinase-like ATPase domain Amet_2214 PF04539 Sigma-70 region 3 Amet_2214 PF04545 Sigma-70, region 4 Amet_2214 PF04542 Sigma-70 region 2 Amet_2216 PF12164 Stage V sporulation protein AA Amet_2217 PF13782 Stage V sporulation protein AB Amet_2219 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Amet_2220 PF07451 Stage V sporulation protein AD (SpoVAD) Amet_2221 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Amet_2222 PF14097 Stage V sporulation protein AE1 Amet_2223 PF00912 Transglycosylase Amet_2223 PF00905 Penicillin binding protein transpeptidase domain Amet_2225 PF16360 GTP-binding GTPase Middle Region Amet_2225 PF13167 GTP-binding GTPase N-terminal Amet_2225 PF01926 50S ribosome-binding GTPase Amet_2229 PF09186 Domain of unknown function (DUF1949) Amet_2229 PF01205 Uncharacterized protein family UPF0029 Amet_2232 PF01925 Sulfite exporter TauE/SafE Amet_2233 PF00291 Pyridoxal-phosphate dependent enzyme Amet_2234 PF02540 NAD synthase Amet_2235 PF01709 Transcriptional regulator Amet_2237 PF13495 Phage integrase, N-terminal SAM-like domain Amet_2237 PF00589 Phage integrase family Amet_2244 PF00583 Acetyltransferase (GNAT) family Amet_2257 PF01381 Helix-turn-helix Amet_2258 PF13302 Acetyltransferase (GNAT) domain Amet_2261 PF00583 Acetyltransferase (GNAT) family Amet_2279 PF00072 Response regulator receiver domain Amet_2279 PF09308 LuxQ, periplasmic Amet_2279 PF00512 His Kinase A (phospho-acceptor) domain Amet_2279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_2280 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Amet_2280 PF13375 RnfC Barrel sandwich hybrid domain Amet_2280 PF10531 SLBB domain Amet_2280 PF13237 4Fe-4S dicluster domain Amet_2281 PF03116 NQR2, RnfD, RnfE family Amet_2282 PF04205 FMN-binding domain Amet_2283 PF02508 Rnf-Nqr subunit, membrane protein Amet_2284 PF02508 Rnf-Nqr subunit, membrane protein Amet_2285 PF13187 4Fe-4S dicluster domain Amet_2285 PF04060 Putative Fe-S cluster Amet_2285 PF00037 4Fe-4S binding domain Amet_2288 PF02545 Maf-like protein Amet_2289 PF04002 RadC-like JAB domain Amet_2293 PF00905 Penicillin binding protein transpeptidase domain Amet_2293 PF03717 Penicillin-binding Protein dimerisation domain Amet_2294 PF03775 Septum formation inhibitor MinC, C-terminal domain Amet_2295 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Amet_2296 PF03776 Septum formation topological specificity factor MinE Amet_2297 PF02142 MGS-like domain Amet_2299 PF02163 Peptidase family M50 Amet_2302 PF10150 Ribonuclease E/G family Amet_2302 PF00575 S1 RNA binding domain Amet_2303 PF00829 Ribosomal prokaryotic L21 protein Amet_2305 PF01016 Ribosomal L27 protein Amet_2307 PF01926 50S ribosome-binding GTPase Amet_2307 PF09269 Domain of unknown function (DUF1967) Amet_2307 PF01018 GTP1/OBG Amet_2309 PF01467 Cytidylyltransferase-like Amet_2310 PF01966 HD domain Amet_2311 PF03816 Cell envelope-related transcriptional attenuator domain Amet_2312 PF01699 Sodium/calcium exchanger protein Amet_2314 PF00133 tRNA synthetases class I (I, L, M and V) Amet_2314 PF08264 Anticodon-binding domain of tRNA Amet_2314 PF13603 Leucyl-tRNA synthetase, Domain 2 Amet_2314 PF09334 tRNA synthetases class I (M) Amet_2316 PF01042 Endoribonuclease L-PSP Amet_2317 PF01842 ACT domain Amet_2317 PF03315 Serine dehydratase beta chain Amet_2318 PF03313 Serine dehydratase alpha chain Amet_2319 PF00768 D-alanyl-D-alanine carboxypeptidase Amet_2319 PF07943 Penicillin-binding protein 5, C-terminal domain Amet_2321 PF02769 AIR synthase related protein, C-terminal domain Amet_2321 PF00586 AIR synthase related protein, N-terminal domain Amet_2322 PF01235 Sodium:alanine symporter family Amet_2323 PF03841 L-seryl-tRNA selenium transferase Amet_2323 PF12390 Selenocysteine synthase N terminal Amet_2324 PF03144 Elongation factor Tu domain 2 Amet_2324 PF00009 Elongation factor Tu GTP binding domain Amet_2324 PF09105 Elongation factor SelB, winged helix Amet_2324 PF09107 Elongation factor SelB, winged helix Amet_2324 PF09106 Elongation factor SelB, winged helix Amet_2325 PF00486 Transcriptional regulatory protein, C terminal Amet_2325 PF00072 Response regulator receiver domain Amet_2326 PF00989 PAS fold Amet_2326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_2326 PF16736 Single Cache-like Amet_2326 PF00512 His Kinase A (phospho-acceptor) domain Amet_2331 PF00561 alpha/beta hydrolase fold Amet_2332 PF01416 tRNA pseudouridine synthase Amet_2334 PF04070 Domain of unknown function (DUF378) Amet_2337 PF02075 Crossover junction endodeoxyribonuclease RuvC Amet_2338 PF07499 RuvA, C-terminal domain Amet_2338 PF01330 RuvA N terminal domain Amet_2339 PF17864 RuvB AAA lid domain Amet_2339 PF05491 RuvB C-terminal winged helix domain Amet_2339 PF05496 Holliday junction DNA helicase RuvB P-loop domain Amet_2340 PF08486 Stage II sporulation protein Amet_2341 PF02547 Queuosine biosynthesis protein Amet_2343 PF02699 Preprotein translocase subunit Amet_2347 PF00132 Bacterial transferase hexapeptide (six repeats) Amet_2348 PF07549 SecD/SecF GG Motif Amet_2348 PF02355 Protein export membrane protein Amet_2349 PF02355 Protein export membrane protein Amet_2349 PF07549 SecD/SecF GG Motif Amet_2350 PF03109 ABC1 family Amet_2351 PF02272 DHHA1 domain Amet_2351 PF17768 RecJ OB domain Amet_2351 PF01368 DHH family Amet_2351 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Amet_2352 PF00156 Phosphoribosyl transferase domain Amet_2353 PF02824 TGS domain Amet_2353 PF04607 Region found in RelA / SpoT proteins Amet_2353 PF13291 ACT domain Amet_2354 PF02580 D-Tyr-tRNA(Tyr) deacylase Amet_2355 PF00753 Metallo-beta-lactamase superfamily Amet_2357 PF04055 Radical SAM superfamily Amet_2358 PF13393 Histidyl-tRNA synthetase Amet_2358 PF03129 Anticodon binding domain Amet_2359 PF02938 GAD domain Amet_2359 PF01336 OB-fold nucleic acid binding domain Amet_2359 PF00152 tRNA synthetases class II (D, K and N) Amet_2361 PF00899 ThiF family Amet_2365 PF00464 Serine hydroxymethyltransferase Amet_2366 PF13426 PAS domain Amet_2366 PF02954 Bacterial regulatory protein, Fis family Amet_2366 PF00158 Sigma-54 interaction domain Amet_2369 PF00291 Pyridoxal-phosphate dependent enzyme Amet_2370 PF16552 D-ornithine 4,5-aminomutase alpha-subunit Amet_2371 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase Amet_2371 PF02310 B12 binding domain Amet_2371 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit Amet_2372 PF13941 MutL protein Amet_2373 PF01168 Alanine racemase, N-terminal domain Amet_2377 PF00239 Resolvase, N terminal domain Amet_2377 PF02796 Helix-turn-helix domain of resolvase Amet_2382 PF00004 ATPase family associated with various cellular activities (AAA) Amet_2404 PF00269 Small, acid-soluble spore proteins, alpha/beta type Amet_2406 PF01471 Putative peptidoglycan binding domain Amet_2406 PF07486 Cell Wall Hydrolase Amet_2408 PF10668 Phage terminase small subunit Amet_2421 PF09393 Phage tail tube protein Amet_2430 PF04865 Baseplate J-like protein Amet_2437 PF05105 Bacteriophage holin family Amet_2438 PF05036 Sporulation related domain Amet_2438 PF01520 N-acetylmuramoyl-L-alanine amidase Amet_2440 PF02086 D12 class N6 adenine-specific DNA methyltransferase Amet_2445 PF01212 Beta-eliminating lyase Amet_2446 PF12002 MgsA AAA+ ATPase C terminal Amet_2446 PF05496 Holliday junction DNA helicase RuvB P-loop domain Amet_2446 PF16193 AAA C-terminal domain Amet_2450 PF00188 Cysteine-rich secretory protein family Amet_2451 PF04321 RmlD substrate binding domain Amet_2452 PF02082 Transcriptional regulator Amet_2453 PF00266 Aminotransferase class-V Amet_2454 PF01592 NifU-like N terminal domain Amet_2457 PF01594 AI-2E family transporter Amet_2458 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Amet_2458 PF02272 DHHA1 domain Amet_2458 PF01411 tRNA synthetases class II (A) Amet_2459 PF06135 IreB regulatory phosphoprotein Amet_2461 PF00248 Aldo/keto reductase family Amet_2462 PF03652 Holliday junction resolvase Amet_2463 PF06949 Protein of unknown function (DUF1292) Amet_2465 PF17746 SfsA N-terminal OB domain Amet_2465 PF03749 Sugar fermentation stimulation protein RE domain Amet_2466 PF01475 Ferric uptake regulator family Amet_2467 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Amet_2467 PF17770 Ribonuclease J C-terminal domain Amet_2467 PF00753 Metallo-beta-lactamase superfamily Amet_2472 PF00485 Phosphoribulokinase / Uridine kinase family Amet_2473 PF00905 Penicillin binding protein transpeptidase domain Amet_2473 PF03717 Penicillin-binding Protein dimerisation domain Amet_2473 PF03793 PASTA domain Amet_2474 PF04545 Sigma-70, region 4 Amet_2474 PF04542 Sigma-70 region 2 Amet_2475 PF00239 Resolvase, N terminal domain Amet_2475 PF02796 Helix-turn-helix domain of resolvase Amet_2480 PF04545 Sigma-70, region 4 Amet_2480 PF04542 Sigma-70 region 2 Amet_2483 PF07963 Prokaryotic N-terminal methylation motif Amet_2488 PF01220 Dehydroquinase class II Amet_2489 PF00557 Metallopeptidase family M24 Amet_2489 PF01321 Creatinase/Prolidase N-terminal domain Amet_2490 PF01132 Elongation factor P (EF-P) OB domain Amet_2490 PF08207 Elongation factor P (EF-P) KOW-like domain Amet_2490 PF09285 Elongation factor P, C-terminal Amet_2494 PF06686 Stage III sporulation protein AC/AD protein family Amet_2495 PF06686 Stage III sporulation protein AC/AD protein family Amet_2496 PF09546 Stage III sporulation protein AE (spore_III_AE) Amet_2497 PF09581 Stage III sporulation protein AF (Spore_III_AF) Amet_2500 PF03780 Asp23 family, cell envelope-related function Amet_2501 PF01029 NusB family Amet_2502 PF00814 Glycoprotease family Amet_2503 PF02601 Exonuclease VII, large subunit Amet_2503 PF13742 OB-fold nucleic acid binding domain Amet_2504 PF02609 Exonuclease VII small subunit Amet_2505 PF00348 Polyprenyl synthetase Amet_2506 PF02681 Divergent PAP2 family Amet_2508 PF02780 Transketolase, C-terminal domain Amet_2508 PF02779 Transketolase, pyrimidine binding domain Amet_2508 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Amet_2509 PF01728 FtsJ-like methyltransferase Amet_2509 PF01479 S4 domain Amet_2510 PF02863 Arginine repressor, C-terminal domain Amet_2510 PF01316 Arginine repressor, DNA binding domain Amet_2511 PF13476 AAA domain Amet_2512 PF05580 SpoIVB peptidase S55 Amet_2512 PF17820 PDZ domain Amet_2513 PF00072 Response regulator receiver domain Amet_2513 PF08769 Sporulation initiation factor Spo0A C terminal Amet_2515 PF02631 RecX family Amet_2518 PF00535 Glycosyl transferase family 2 Amet_2521 PF00293 NUDIX domain Amet_2522 PF01944 Stage II sporulation protein M Amet_2523 PF00589 Phage integrase family Amet_2523 PF02899 Phage integrase, N-terminal SAM-like domain Amet_2524 PF01676 Metalloenzyme superfamily Amet_2525 PF01048 Phosphorylase superfamily Amet_2526 PF01048 Phosphorylase superfamily Amet_2527 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Amet_2527 PF00591 Glycosyl transferase family, a/b domain Amet_2527 PF02885 Glycosyl transferase family, helical bundle domain Amet_2528 PF07943 Penicillin-binding protein 5, C-terminal domain Amet_2528 PF00768 D-alanyl-D-alanine carboxypeptidase Amet_2529 PF01743 Poly A polymerase head domain Amet_2529 PF13735 tRNA nucleotidyltransferase domain 2 putative Amet_2529 PF12627 Probable RNA and SrmB- binding site of polymerase A Amet_2530 PF02163 Peptidase family M50 Amet_2531 PF02616 Segregation and condensation protein ScpA Amet_2532 PF04079 Segregation and condensation complex subunit ScpB Amet_2533 PF03807 NADP oxidoreductase coenzyme F420-dependent Amet_2533 PF14748 Pyrroline-5-carboxylate reductase dimerisation Amet_2534 PF00589 Phage integrase family Amet_2534 PF02899 Phage integrase, N-terminal SAM-like domain Amet_2535 PF01726 LexA DNA binding domain Amet_2535 PF00717 Peptidase S24-like Amet_2537 PF06838 Methionine gamma-lyase Amet_2539 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Amet_2539 PF01926 50S ribosome-binding GTPase Amet_2540 PF17866 AAA lid domain Amet_2540 PF00004 ATPase family associated with various cellular activities (AAA) Amet_2541 PF17209 Hfq protein Amet_2543 PF01119 DNA mismatch repair protein, C-terminal domain Amet_2543 PF08676 MutL C terminal dimerisation domain Amet_2544 PF00488 MutS domain V Amet_2544 PF01624 MutS domain I Amet_2544 PF05188 MutS domain II Amet_2544 PF05192 MutS domain III Amet_2544 PF05190 MutS family domain IV Amet_2545 PF04055 Radical SAM superfamily Amet_2545 PF01938 TRAM domain Amet_2545 PF00919 Uncharacterized protein family UPF0004 Amet_2559 PF04865 Baseplate J-like protein Amet_2580 PF10668 Phage terminase small subunit Amet_2582 PF01555 DNA methylase Amet_2585 PF00436 Single-strand binding protein family Amet_2606 PF02463 RecF/RecN/SMC N terminal domain Amet_2613 PF01381 Helix-turn-helix Amet_2616 PF07508 Recombinase Amet_2616 PF13408 Recombinase zinc beta ribbon domain Amet_2616 PF00239 Resolvase, N terminal domain Amet_2617 PF00919 Uncharacterized protein family UPF0004 Amet_2617 PF01938 TRAM domain Amet_2617 PF04055 Radical SAM superfamily Amet_2618 PF00155 Aminotransferase class I and II Amet_2623 PF03705 CheR methyltransferase, all-alpha domain Amet_2623 PF01739 CheR methyltransferase, SAM binding domain Amet_2624 PF00575 S1 RNA binding domain Amet_2625 PF02401 LytB protein Amet_2626 PF01553 Acyltransferase Amet_2627 PF02224 Cytidylate kinase Amet_2630 PF00300 Histidine phosphatase superfamily (branch 1) Amet_2631 PF01418 Helix-turn-helix domain, rpiR family Amet_2631 PF01380 SIS domain Amet_2633 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Amet_2634 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Amet_2634 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Amet_2634 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Amet_2636 PF01975 Survival protein SurE Amet_2638 PF02436 Conserved carboxylase domain Amet_2638 PF00682 HMGL-like Amet_2638 PF00364 Biotin-requiring enzyme Amet_2640 PF00849 RNA pseudouridylate synthase Amet_2640 PF01479 S4 domain Amet_2641 PF01134 Glucose inhibited division protein A Amet_2641 PF13932 GidA associated domain Amet_2643 PF00768 D-alanyl-D-alanine carboxypeptidase Amet_2643 PF07943 Penicillin-binding protein 5, C-terminal domain Amet_2645 PF09579 Sporulation protein YtfJ (Spore_YtfJ) Amet_2648 PF02675 S-adenosylmethionine decarboxylase Amet_2649 PF17284 Spermidine synthase tetramerisation domain Amet_2650 PF00491 Arginase family Amet_2653 PF00155 Aminotransferase class I and II Amet_2655 PF02811 PHP domain Amet_2656 PF04232 Stage V sporulation protein S (SpoVS) Amet_2657 PF01966 HD domain Amet_2657 PF00013 KH domain Amet_2657 PF12072 Domain of unknown function (DUF3552) Amet_2658 PF00154 recA bacterial DNA recombination protein Amet_2659 PF01066 CDP-alcohol phosphatidyltransferase Amet_2660 PF04055 Radical SAM superfamily Amet_2660 PF00919 Uncharacterized protein family UPF0004 Amet_2660 PF18693 TRAM domain Amet_2661 PF00581 Rhodanese-like domain Amet_2662 PF17854 FtsK alpha domain Amet_2662 PF09397 Ftsk gamma domain Amet_2662 PF01580 FtsK/SpoIIIE family Amet_2663 PF00574 Clp protease Amet_2665 PF05193 Peptidase M16 inactive domain Amet_2665 PF00675 Insulinase (Peptidase family M16) Amet_2666 PF01522 Polysaccharide deacetylase Amet_2666 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain Amet_2667 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Amet_2667 PF00575 S1 RNA binding domain Amet_2667 PF03725 3' exoribonuclease family, domain 2 Amet_2667 PF01138 3' exoribonuclease family, domain 1 Amet_2667 PF00013 KH domain Amet_2668 PF00312 Ribosomal protein S15 Amet_2669 PF01687 Riboflavin kinase Amet_2669 PF06574 FAD synthetase Amet_2670 PF01509 TruB family pseudouridylate synthase (N terminal domain) Amet_2670 PF16198 tRNA pseudouridylate synthase B C-terminal domain Amet_2671 PF01368 DHH family Amet_2671 PF02272 DHHA1 domain Amet_2672 PF02033 Ribosome-binding factor A Amet_2673 PF04760 Translation initiation factor IF-2, N-terminal region Amet_2673 PF11987 Translation-initiation factor 2 Amet_2673 PF00009 Elongation factor Tu GTP binding domain Amet_2674 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Amet_2676 PF13184 NusA-like KH domain Amet_2676 PF00575 S1 RNA binding domain Amet_2676 PF08529 NusA N-terminal domain Amet_2677 PF02576 RimP N-terminal domain Amet_2677 PF17384 RimP C-terminal SH3 domain Amet_2678 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Amet_2678 PF02811 PHP domain Amet_2678 PF07733 Bacterial DNA polymerase III alpha NTPase domain Amet_2678 PF11490 DNA polymerase III polC-type N-terminus II Amet_2678 PF00929 Exonuclease Amet_2678 PF01336 OB-fold nucleic acid binding domain Amet_2678 PF14579 Helix-hairpin-helix motif Amet_2679 PF00535 Glycosyl transferase family 2 Amet_2680 PF04551 GcpE protein Amet_2681 PF02163 Peptidase family M50 Amet_2681 PF17820 PDZ domain Amet_2682 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Amet_2682 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Amet_2682 PF13288 DXP reductoisomerase C-terminal domain Amet_2684 PF01255 Putative undecaprenyl diphosphate synthase Amet_2686 PF01765 Ribosome recycling factor Amet_2687 PF00696 Amino acid kinase family Amet_2688 PF00889 Elongation factor TS Amet_2689 PF00318 Ribosomal protein S2 Amet_2694 PF04542 Sigma-70 region 2 Amet_2694 PF04539 Sigma-70 region 3 Amet_2694 PF04545 Sigma-70, region 4 Amet_2695 PF03975 CheD chemotactic sensory transduction Amet_2696 PF04509 CheC-like family Amet_2697 PF01584 CheW-like domain Amet_2698 PF01584 CheW-like domain Amet_2698 PF02895 Signal transducing histidine kinase, homodimeric domain Amet_2698 PF07194 P2 response regulator binding domain Amet_2698 PF01627 Hpt domain Amet_2698 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_2699 PF00072 Response regulator receiver domain Amet_2699 PF01339 CheB methylesterase Amet_2701 PF10609 NUBPL iron-transfer P-loop NTPase Amet_2702 PF00448 SRP54-type protein, GTPase domain Amet_2703 PF00771 FHIPEP family Amet_2704 PF01312 FlhB HrpN YscU SpaS Family Amet_2705 PF01311 Bacterial export proteins, family 1 Amet_2706 PF01313 Bacterial export proteins, family 3 Amet_2707 PF00813 FliP family Amet_2709 PF00072 Response regulator receiver domain Amet_2710 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Amet_2710 PF04509 CheC-like family Amet_2711 PF02154 Flagellar motor switch protein FliM Amet_2711 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Amet_2713 PF00691 OmpA family Amet_2713 PF13677 Membrane MotB of proton-channel complex MotA/MotB Amet_2714 PF01618 MotA/TolQ/ExbB proton channel family Amet_2716 PF07559 Flagellar basal body protein FlaE Amet_2716 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Amet_2716 PF00460 Flagella basal body rod protein Amet_2718 PF03963 Flagellar hook capping protein - N-terminal region Amet_2722 PF02874 ATP synthase alpha/beta family, beta-barrel domain Amet_2722 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Amet_2722 PF18269 T3SS EscN ATPase C-terminal domain Amet_2724 PF14841 FliG middle domain Amet_2724 PF01706 FliG C-terminal domain Amet_2724 PF14842 FliG N-terminal domain Amet_2725 PF01514 Secretory protein of YscJ/FliF family Amet_2725 PF08345 Flagellar M-ring protein C-terminal Amet_2726 PF02049 Flagellar hook-basal body complex protein FliE Amet_2727 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Amet_2727 PF00460 Flagella basal body rod protein Amet_2728 PF00460 Flagella basal body rod protein Amet_2729 PF00512 His Kinase A (phospho-acceptor) domain Amet_2729 PF13188 PAS domain Amet_2729 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_2729 PF08448 PAS fold Amet_2729 PF00072 Response regulator receiver domain Amet_2732 PF01584 CheW-like domain Amet_2732 PF00072 Response regulator receiver domain Amet_2733 PF01966 HD domain Amet_2733 PF00072 Response regulator receiver domain Amet_2734 PF08222 CodY helix-turn-helix domain Amet_2734 PF06018 CodY GAF-like domain Amet_2735 PF01751 Toprim domain Amet_2735 PF01131 DNA topoisomerase Amet_2735 PF01396 Topoisomerase DNA binding C4 zinc finger Amet_2736 PF02481 DNA recombination-mediator protein A Amet_2736 PF17782 DprA winged helix domain Amet_2737 PF13335 Magnesium chelatase, subunit ChlI C-terminal Amet_2737 PF01078 Magnesium chelatase, subunit ChlI Amet_2739 PF02021 Uncharacterised protein family UPF0102 Amet_2740 PF01351 Ribonuclease HII Amet_2741 PF01926 50S ribosome-binding GTPase Amet_2742 PF01245 Ribosomal protein L19 Amet_2743 PF01746 tRNA (Guanine-1)-methyltransferase Amet_2744 PF01782 RimM N-terminal domain Amet_2744 PF05239 PRC-barrel domain Amet_2746 PF00886 Ribosomal protein S16 Amet_2747 PF00448 SRP54-type protein, GTPase domain Amet_2747 PF02978 Signal peptide binding domain Amet_2747 PF02881 SRP54-type protein, helical bundle domain Amet_2748 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Amet_2749 PF02881 SRP54-type protein, helical bundle domain Amet_2749 PF00448 SRP54-type protein, GTPase domain Amet_2750 PF02463 RecF/RecN/SMC N terminal domain Amet_2750 PF06470 SMC proteins Flexible Hinge Domain Amet_2752 PF14622 Ribonuclease-III-like Amet_2752 PF00035 Double-stranded RNA binding motif Amet_2753 PF00109 Beta-ketoacyl synthase, N-terminal domain Amet_2753 PF02801 Beta-ketoacyl synthase, C-terminal domain Amet_2754 PF00550 Phosphopantetheine attachment site Amet_2756 PF00698 Acyl transferase domain Amet_2757 PF03060 Nitronate monooxygenase Amet_2758 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Amet_2758 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Amet_2759 PF02504 Fatty acid synthesis protein Amet_2761 PF01783 Ribosomal L32p protein family Amet_2763 PF00871 Acetokinase family Amet_2764 PF05636 HIGH Nucleotidyl Transferase Amet_2765 PF07670 Nucleoside recognition Amet_2767 PF01467 Cytidylyltransferase-like Amet_2769 PF00269 Small, acid-soluble spore proteins, alpha/beta type Amet_2770 PF00271 Helicase conserved C-terminal domain Amet_2770 PF00270 DEAD/DEAH box helicase Amet_2770 PF17191 RecG wedge domain Amet_2771 PF13684 Dihydroxyacetone kinase family Amet_2771 PF02734 DAK2 domain Amet_2772 PF03780 Asp23 family, cell envelope-related function Amet_2773 PF00830 Ribosomal L28 family Amet_2776 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain Amet_2776 PF04263 Thiamin pyrophosphokinase, catalytic domain Amet_2777 PF00834 Ribulose-phosphate 3 epimerase family Amet_2778 PF16745 RsgA N-terminal domain Amet_2778 PF03193 RsgA GTPase Amet_2779 PF03793 PASTA domain Amet_2779 PF00069 Protein kinase domain Amet_2781 PF04055 Radical SAM superfamily Amet_2782 PF01189 16S rRNA methyltransferase RsmB/F Amet_2782 PF01029 NusB family Amet_2783 PF04298 Putative neutral zinc metallopeptidase Amet_2785 PF02911 Formyl transferase, C-terminal domain Amet_2785 PF00551 Formyl transferase Amet_2786 PF01327 Polypeptide deformylase Amet_2787 PF17764 3′ DNA-binding domain (3′BD) Amet_2787 PF00271 Helicase conserved C-terminal domain Amet_2787 PF18074 Primosomal protein N C-terminal domain Amet_2787 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Amet_2787 PF04851 Type III restriction enzyme, res subunit Amet_2788 PF02441 Flavoprotein Amet_2788 PF04127 DNA / pantothenate metabolism flavoprotein Amet_2789 PF01192 RNA polymerase Rpb6 Amet_2790 PF00625 Guanylate kinase Amet_2791 PF04025 Domain of unknown function (DUF370) Amet_2792 PF03755 YicC-like family, N-terminal region Amet_2792 PF08340 Domain of unknown function (DUF1732) Amet_2793 PF01678 Diaminopimelate epimerase Amet_2795 PF00156 Phosphoribosyl transferase domain Amet_2796 PF01479 S4 domain Amet_2796 PF00849 RNA pseudouridylate synthase Amet_2797 PF01252 Signal peptidase (SPase) II Amet_2798 PF01258 Prokaryotic dksA/traR C4-type zinc finger Amet_2799 PF01048 Phosphorylase superfamily Amet_2800 PF05103 DivIVA protein Amet_2801 PF01479 S4 domain Amet_2801 PF17774 Putative RNA-binding domain in YlmH Amet_2803 PF04472 Cell division protein SepF Amet_2804 PF01168 Alanine racemase, N-terminal domain Amet_2808 PF00005 ABC transporter Amet_2808 PF00571 CBS domain Amet_2809 PF00528 Binding-protein-dependent transport system inner membrane component Amet_2810 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Amet_2812 PF02653 Branched-chain amino acid transport system / permease component Amet_2813 PF00005 ABC transporter Amet_2814 PF13407 Periplasmic binding protein domain Amet_2815 PF13407 Periplasmic binding protein domain Amet_2816 PF12833 Helix-turn-helix domain Amet_2816 PF00072 Response regulator receiver domain Amet_2817 PF02743 Cache domain Amet_2817 PF00672 HAMP domain Amet_2817 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_2817 PF06580 Histidine kinase Amet_2820 PF03009 Glycerophosphoryl diester phosphodiesterase family Amet_2821 PF02675 S-adenosylmethionine decarboxylase Amet_2822 PF07724 AAA domain (Cdc48 subfamily) Amet_2822 PF00004 ATPase family associated with various cellular activities (AAA) Amet_2822 PF17871 AAA lid domain Amet_2822 PF02861 Clp amino terminal domain, pathogenicity island component Amet_2822 PF10431 C-terminal, D2-small domain, of ClpB protein Amet_2824 PF04011 LemA family Amet_2825 PF01476 LysM domain Amet_2825 PF00877 NlpC/P60 family Amet_2845 PF01695 IstB-like ATP binding protein Amet_2846 PF00665 Integrase core domain Amet_2855 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Amet_2855 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Amet_2856 PF02660 Glycerol-3-phosphate acyltransferase Amet_2857 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Amet_2857 PF01926 50S ribosome-binding GTPase Amet_2862 PF14045 YIEGIA protein Amet_2865 PF18698 Histidine kinase sensor domain Amet_2865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_2865 PF00512 His Kinase A (phospho-acceptor) domain Amet_2865 PF00989 PAS fold Amet_2865 PF00672 HAMP domain Amet_2866 PF00486 Transcriptional regulatory protein, C terminal Amet_2866 PF00072 Response regulator receiver domain Amet_2868 PF03477 ATP cone domain Amet_2869 PF05239 PRC-barrel domain Amet_2870 PF04539 Sigma-70 region 3 Amet_2870 PF04542 Sigma-70 region 2 Amet_2870 PF04545 Sigma-70, region 4 Amet_2871 PF04545 Sigma-70, region 4 Amet_2871 PF04542 Sigma-70 region 2 Amet_2872 PF03419 Sporulation factor SpoIIGA Amet_2873 PF00091 Tubulin/FtsZ family, GTPase domain Amet_2873 PF12327 FtsZ family, C-terminal domain Amet_2878 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Amet_2879 PF04101 Glycosyltransferase family 28 C-terminal domain Amet_2879 PF03033 Glycosyltransferase family 28 N-terminal domain Amet_2880 PF01098 Cell cycle protein Amet_2881 PF08245 Mur ligase middle domain Amet_2881 PF02875 Mur ligase family, glutamate ligase domain Amet_2882 PF00953 Glycosyl transferase family 4 Amet_2883 PF08245 Mur ligase middle domain Amet_2883 PF02875 Mur ligase family, glutamate ligase domain Amet_2883 PF01225 Mur ligase family, catalytic domain Amet_2884 PF01225 Mur ligase family, catalytic domain Amet_2884 PF02875 Mur ligase family, glutamate ligase domain Amet_2884 PF08245 Mur ligase middle domain Amet_2885 PF03717 Penicillin-binding Protein dimerisation domain Amet_2885 PF03793 PASTA domain Amet_2885 PF00905 Penicillin binding protein transpeptidase domain Amet_2887 PF01795 MraW methylase family Amet_2888 PF02381 MraZ protein, putative antitoxin-like Amet_2891 PF05193 Peptidase M16 inactive domain Amet_2891 PF00675 Insulinase (Peptidase family M16) Amet_2892 PF05193 Peptidase M16 inactive domain Amet_2896 PF06071 Protein of unknown function (DUF933) Amet_2896 PF01926 50S ribosome-binding GTPase Amet_2897 PF01791 DeoC/LacD family aldolase Amet_2898 PF06130 Phosphate propanoyltransferase Amet_2904 PF01923 Cobalamin adenosyltransferase Amet_2905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_2905 PF00005 ABC transporter Amet_2906 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_2906 PF00005 ABC transporter Amet_2909 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amet_2911 PF00005 ABC transporter Amet_2911 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_2912 PF00005 ABC transporter Amet_2912 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_2914 PF00528 Binding-protein-dependent transport system inner membrane component Amet_2915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amet_2918 PF01578 Cytochrome C assembly protein Amet_2919 PF05140 ResB-like family Amet_2920 PF02335 Cytochrome c552 Amet_2925 PF00563 EAL domain Amet_2925 PF00990 Diguanylate cyclase, GGDEF domain Amet_2925 PF03707 Bacterial signalling protein N terminal repeat Amet_2926 PF00563 EAL domain Amet_2926 PF00990 Diguanylate cyclase, GGDEF domain Amet_2926 PF03707 Bacterial signalling protein N terminal repeat Amet_2927 PF04542 Sigma-70 region 2 Amet_2927 PF08281 Sigma-70, region 4 Amet_2931 PF07739 TipAS antibiotic-recognition domain Amet_2931 PF13411 MerR HTH family regulatory protein Amet_2932 PF12849 PBP superfamily domain Amet_2933 PF00293 NUDIX domain Amet_2934 PF02743 Cache domain Amet_2934 PF00672 HAMP domain Amet_2934 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_2935 PF03572 Peptidase family S41 Amet_2935 PF17820 PDZ domain Amet_2935 PF01471 Putative peptidoglycan binding domain Amet_2940 PF13419 Haloacid dehalogenase-like hydrolase Amet_2941 PF01546 Peptidase family M20/M25/M40 Amet_2941 PF07687 Peptidase dimerisation domain Amet_2943 PF00672 HAMP domain Amet_2943 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_2943 PF02743 Cache domain Amet_2944 PF02903 Alpha amylase, N-terminal ig-like domain Amet_2944 PF00686 Starch binding domain Amet_2944 PF00128 Alpha amylase, catalytic domain Amet_2945 PF00343 Carbohydrate phosphorylase Amet_2946 PF08323 Starch synthase catalytic domain Amet_2946 PF00534 Glycosyl transferases group 1 Amet_2947 PF00483 Nucleotidyl transferase Amet_2948 PF00483 Nucleotidyl transferase Amet_2948 PF00132 Bacterial transferase hexapeptide (six repeats) Amet_2949 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Amet_2949 PF02806 Alpha amylase, C-terminal all-beta domain Amet_2949 PF00128 Alpha amylase, catalytic domain Amet_2952 PF00270 DEAD/DEAH box helicase Amet_2952 PF00271 Helicase conserved C-terminal domain Amet_2953 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Amet_2953 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amet_2954 PF07478 D-ala D-ala ligase C-terminus Amet_2954 PF01820 D-ala D-ala ligase N-terminus Amet_2956 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Amet_2956 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Amet_2958 PF08218 Citrate lyase ligase C-terminal domain Amet_2958 PF00583 Acetyltransferase (GNAT) family Amet_2959 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Amet_2959 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Amet_2960 PF02743 Cache domain Amet_2960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_2960 PF00672 HAMP domain Amet_2961 PF03547 Membrane transport protein Amet_2962 PF00694 Aconitase C-terminal domain Amet_2964 PF03390 2-hydroxycarboxylate transporter family Amet_2965 PF03949 Malic enzyme, NAD binding domain Amet_2965 PF00390 Malic enzyme, N-terminal domain Amet_2966 PF04703 FaeA-like protein Amet_2966 PF00072 Response regulator receiver domain Amet_2967 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Amet_2967 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_2967 PF17203 Single cache domain 3 Amet_2967 PF00989 PAS fold Amet_2968 PF07722 Peptidase C26 Amet_2969 PF00563 EAL domain Amet_2969 PF08668 HDOD domain Amet_2973 PF02626 Carboxyltransferase domain, subdomain A and B Amet_2974 PF02682 Carboxyltransferase domain, subdomain C and D Amet_2975 PF07286 Protein of unknown function (DUF1445) Amet_2976 PF01566 Natural resistance-associated macrophage protein Amet_2977 PF03746 LamB/YcsF family Amet_2978 PF02954 Bacterial regulatory protein, Fis family Amet_2978 PF00072 Response regulator receiver domain Amet_2978 PF00158 Sigma-54 interaction domain Amet_2979 PF00989 PAS fold Amet_2979 PF00512 His Kinase A (phospho-acceptor) domain Amet_2979 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_2980 PF00474 Sodium:solute symporter family Amet_2990 PF01784 NIF3 (NGG1p interacting factor 3) Amet_2991 PF04816 tRNA (adenine(22)-N(1))-methyltransferase Amet_2993 PF04542 Sigma-70 region 2 Amet_2993 PF03979 Sigma-70 factor, region 1.1 Amet_2993 PF00140 Sigma-70 factor, region 1.2 Amet_2993 PF04545 Sigma-70, region 4 Amet_2993 PF04539 Sigma-70 region 3 Amet_2994 PF08275 DNA primase catalytic core, N-terminal domain Amet_2994 PF10410 DnaB-helicase binding domain of primase Amet_2994 PF01807 CHC2 zinc finger Amet_2995 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Amet_2996 PF13286 Phosphohydrolase-associated domain Amet_2996 PF01966 HD domain Amet_2998 PF03591 AzlC protein Amet_2999 PF00155 Aminotransferase class I and II Amet_2999 PF00392 Bacterial regulatory proteins, gntR family Amet_3000 PF00890 FAD binding domain Amet_3000 PF04205 FMN-binding domain Amet_3000 PF03358 NADPH-dependent FMN reductase Amet_3001 PF00072 Response regulator receiver domain Amet_3001 PF00486 Transcriptional regulatory protein, C terminal Amet_3002 PF00672 HAMP domain Amet_3002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3002 PF00512 His Kinase A (phospho-acceptor) domain Amet_3002 PF13426 PAS domain Amet_3003 PF01212 Beta-eliminating lyase Amet_3008 PF00440 Bacterial regulatory proteins, tetR family Amet_3009 PF04205 FMN-binding domain Amet_3009 PF00890 FAD binding domain Amet_3009 PF03358 NADPH-dependent FMN reductase Amet_3010 PF01609 Transposase DDE domain Amet_3013 PF00163 Ribosomal protein S4/S9 N-terminal domain Amet_3013 PF01479 S4 domain Amet_3014 PF00258 Flavodoxin Amet_3015 PF02583 Metal-sensitive transcriptional repressor Amet_3016 PF01554 MatE Amet_3018 PF03551 Transcriptional regulator PadR-like family Amet_3019 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Amet_3019 PF00391 PEP-utilising enzyme, mobile domain Amet_3019 PF02896 PEP-utilising enzyme, TIM barrel domain Amet_3020 PF03618 Kinase/pyrophosphorylase Amet_3021 PF08279 HTH domain Amet_3021 PF00571 CBS domain Amet_3022 PF03129 Anticodon binding domain Amet_3022 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Amet_3023 PF00889 Elongation factor TS Amet_3024 PF02565 Recombination protein O C terminal Amet_3024 PF11967 Recombination protein O N terminal Amet_3026 PF01926 50S ribosome-binding GTPase Amet_3026 PF07650 KH domain Amet_3027 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Amet_3028 PF17479 Protein of unknown function (DUF3048) C-terminal domain Amet_3028 PF11258 Protein of unknown function (DUF3048) N-terminal domain Amet_3030 PF01219 Prokaryotic diacylglycerol kinase Amet_3031 PF02130 Uncharacterized protein family UPF0054 Amet_3032 PF07697 7TM-HD extracellular Amet_3032 PF01966 HD domain Amet_3032 PF07698 7TM receptor with intracellular HD hydrolase Amet_3033 PF02562 PhoH-like protein Amet_3035 PF07873 YabP family Amet_3037 PF12127 SigmaW regulon antibacterial Amet_3038 PF01957 NfeD-like C-terminal, partner-binding Amet_3038 PF01972 Serine dehydrogenase proteinase Amet_3042 PF01165 Ribosomal protein S21 Amet_3043 PF01230 HIT domain Amet_3044 PF04055 Radical SAM superfamily Amet_3044 PF01938 TRAM domain Amet_3044 PF00919 Uncharacterized protein family UPF0004 Amet_3045 PF04452 RNA methyltransferase Amet_3048 PF00012 Hsp70 protein Amet_3049 PF01025 GrpE Amet_3050 PF01628 HrcA protein C terminal domain Amet_3051 PF06969 HemN C-terminal domain Amet_3051 PF04055 Radical SAM superfamily Amet_3052 PF00679 Elongation factor G C-terminus Amet_3052 PF03144 Elongation factor Tu domain 2 Amet_3052 PF00009 Elongation factor Tu GTP binding domain Amet_3052 PF06421 GTP-binding protein LepA C-terminus Amet_3055 PF03418 Germination protease Amet_3056 PF01649 Ribosomal protein S20 Amet_3058 PF00753 Metallo-beta-lactamase superfamily Amet_3058 PF03772 Competence protein Amet_3058 PF13567 Domain of unknown function (DUF4131) Amet_3060 PF12706 Beta-lactamase superfamily domain Amet_3062 PF00753 Metallo-beta-lactamase superfamily Amet_3062 PF13567 Domain of unknown function (DUF4131) Amet_3062 PF03772 Competence protein Amet_3069 PF01061 ABC-2 type transporter Amet_3070 PF00005 ABC transporter Amet_3071 PF07969 Amidohydrolase family Amet_3072 PF04608 Phosphatidylglycerophosphatase A Amet_3073 PF00270 DEAD/DEAH box helicase Amet_3073 PF00271 Helicase conserved C-terminal domain Amet_3075 PF03323 Bacillus/Clostridium GerA spore germination protein Amet_3077 PF01244 Membrane dipeptidase (Peptidase family M19) Amet_3079 PF00005 ABC transporter Amet_3081 PF02308 MgtC family Amet_3082 PF01970 Tripartite tricarboxylate transporter TctA family Amet_3084 PF03401 Tripartite tricarboxylate transporter family receptor Amet_3086 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3086 PF18698 Histidine kinase sensor domain Amet_3086 PF00672 HAMP domain Amet_3086 PF00512 His Kinase A (phospho-acceptor) domain Amet_3086 PF00989 PAS fold Amet_3087 PF00072 Response regulator receiver domain Amet_3087 PF00486 Transcriptional regulatory protein, C terminal Amet_3089 PF00766 Electron transfer flavoprotein FAD-binding domain Amet_3089 PF01012 Electron transfer flavoprotein domain Amet_3090 PF01012 Electron transfer flavoprotein domain Amet_3091 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amet_3091 PF02770 Acyl-CoA dehydrogenase, middle domain Amet_3091 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amet_3092 PF01575 MaoC like domain Amet_3095 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Amet_3095 PF00037 4Fe-4S binding domain Amet_3095 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Amet_3096 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amet_3096 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Amet_3096 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Amet_3101 PF00535 Glycosyl transferase family 2 Amet_3103 PF01145 SPFH domain / Band 7 family Amet_3104 PF01145 SPFH domain / Band 7 family Amet_3106 PF00521 DNA gyrase/topoisomerase IV, subunit A Amet_3106 PF03989 DNA gyrase C-terminal domain, beta-propeller Amet_3107 PF01751 Toprim domain Amet_3107 PF00204 DNA gyrase B Amet_3107 PF00986 DNA gyrase B subunit, carboxyl terminus Amet_3107 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3113 PF03734 L,D-transpeptidase catalytic domain Amet_3114 PF00133 tRNA synthetases class I (I, L, M and V) Amet_3114 PF08264 Anticodon-binding domain of tRNA Amet_3115 PF03009 Glycerophosphoryl diester phosphodiesterase family Amet_3116 PF00464 Serine hydroxymethyltransferase Amet_3117 PF17770 Ribonuclease J C-terminal domain Amet_3117 PF00753 Metallo-beta-lactamase superfamily Amet_3117 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Amet_3120 PF01618 MotA/TolQ/ExbB proton channel family Amet_3122 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amet_3123 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Amet_3123 PF01464 Transglycosylase SLT domain Amet_3124 PF01121 Dephospho-CoA kinase Amet_3125 PF00476 DNA polymerase family A Amet_3125 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Amet_3125 PF01367 5'-3' exonuclease, C-terminal SAM fold Amet_3127 PF04542 Sigma-70 region 2 Amet_3127 PF08281 Sigma-70, region 4 Amet_3128 PF04307 LexA-binding, inner membrane-associated putative hydrolase Amet_3137 PF16916 Dimerisation domain of Zinc Transporter Amet_3137 PF01545 Cation efflux family Amet_3138 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amet_3138 PF03466 LysR substrate binding domain Amet_3139 PF02645 Uncharacterised protein, DegV family COG1307 Amet_3140 PF02127 Aminopeptidase I zinc metalloprotease (M18) Amet_3141 PF00072 Response regulator receiver domain Amet_3141 PF00196 Bacterial regulatory proteins, luxR family Amet_3142 PF07730 Histidine kinase Amet_3142 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3142 PF05384 Sensor protein DegS Amet_3144 PF01584 CheW-like domain Amet_3145 PF05979 Bacterial protein of unknown function (DUF896) Amet_3148 PF01979 Amidohydrolase family Amet_3149 PF00221 Aromatic amino acid lyase Amet_3150 PF03698 Uncharacterised protein family (UPF0180) Amet_3151 PF01047 MarR family Amet_3152 PF08525 Opacity-associated protein A N-terminal motif Amet_3152 PF01551 Peptidase family M23 Amet_3152 PF01476 LysM domain Amet_3154 PF00781 Diacylglycerol kinase catalytic domain Amet_3155 PF00155 Aminotransferase class I and II Amet_3159 PF00005 ABC transporter Amet_3159 PF00664 ABC transporter transmembrane region Amet_3160 PF00005 ABC transporter Amet_3160 PF00664 ABC transporter transmembrane region Amet_3164 PF00563 EAL domain Amet_3164 PF00498 FHA domain Amet_3164 PF00990 Diguanylate cyclase, GGDEF domain Amet_3166 PF02811 PHP domain Amet_3166 PF14791 DNA polymerase beta thumb Amet_3166 PF14716 Helix-hairpin-helix domain Amet_3168 PF03453 MoeA N-terminal region (domain I and II) Amet_3168 PF00994 Probable molybdopterin binding domain Amet_3168 PF03454 MoeA C-terminal region (domain IV) Amet_3169 PF03453 MoeA N-terminal region (domain I and II) Amet_3169 PF00994 Probable molybdopterin binding domain Amet_3169 PF03454 MoeA C-terminal region (domain IV) Amet_3170 PF01434 Peptidase family M41 Amet_3170 PF00004 ATPase family associated with various cellular activities (AAA) Amet_3170 PF17862 AAA+ lid domain Amet_3173 PF00849 RNA pseudouridylate synthase Amet_3174 PF01513 ATP-NAD kinase Amet_3175 PF00375 Sodium:dicarboxylate symporter family Amet_3176 PF01339 CheB methylesterase Amet_3176 PF00072 Response regulator receiver domain Amet_3182 PF00375 Sodium:dicarboxylate symporter family Amet_3183 PF04060 Putative Fe-S cluster Amet_3185 PF07556 Protein of unknown function (DUF1538) Amet_3186 PF03116 NQR2, RnfD, RnfE family Amet_3187 PF04205 FMN-binding domain Amet_3188 PF02508 Rnf-Nqr subunit, membrane protein Amet_3189 PF02508 Rnf-Nqr subunit, membrane protein Amet_3190 PF00970 Oxidoreductase FAD-binding domain Amet_3190 PF00111 2Fe-2S iron-sulfur cluster binding domain Amet_3190 PF00175 Oxidoreductase NAD-binding domain Amet_3193 PF00202 Aminotransferase class-III Amet_3194 PF00696 Amino acid kinase family Amet_3194 PF13840 ACT domain Amet_3194 PF01842 ACT domain Amet_3195 PF00132 Bacterial transferase hexapeptide (six repeats) Amet_3195 PF14602 Hexapeptide repeat of succinyl-transferase Amet_3195 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal Amet_3196 PF01113 Dihydrodipicolinate reductase, N-terminus Amet_3196 PF05173 Dihydrodipicolinate reductase, C-terminus Amet_3197 PF00701 Dihydrodipicolinate synthetase family Amet_3198 PF01118 Semialdehyde dehydrogenase, NAD binding domain Amet_3198 PF02774 Semialdehyde dehydrogenase, dimerisation domain Amet_3199 PF07486 Cell Wall Hydrolase Amet_3200 PF00795 Carbon-nitrogen hydrolase Amet_3202 PF03323 Bacillus/Clostridium GerA spore germination protein Amet_3205 PF03099 Biotin/lipoate A/B protein ligase family Amet_3205 PF10437 Bacterial lipoate protein ligase C-terminus Amet_3206 PF01070 FMN-dependent dehydrogenase Amet_3208 PF18698 Histidine kinase sensor domain Amet_3208 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3208 PF00672 HAMP domain Amet_3208 PF00989 PAS fold Amet_3208 PF00512 His Kinase A (phospho-acceptor) domain Amet_3209 PF00072 Response regulator receiver domain Amet_3209 PF00486 Transcriptional regulatory protein, C terminal Amet_3210 PF01869 BadF/BadG/BcrA/BcrD ATPase family Amet_3211 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component Amet_3212 PF03323 Bacillus/Clostridium GerA spore germination protein Amet_3213 PF03600 Citrate transporter Amet_3214 PF00694 Aconitase C-terminal domain Amet_3214 PF00330 Aconitase family (aconitate hydratase) Amet_3215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amet_3215 PF03466 LysR substrate binding domain Amet_3216 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Amet_3217 PF00364 Biotin-requiring enzyme Amet_3219 PF01039 Carboxyl transferase domain Amet_3220 PF00364 Biotin-requiring enzyme Amet_3220 PF00682 HMGL-like Amet_3220 PF02436 Conserved carboxylase domain Amet_3222 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase Amet_3223 PF04223 Citrate lyase, alpha subunit (CitF) Amet_3224 PF03328 HpcH/HpaI aldolase/citrate lyase family Amet_3225 PF06857 Malonate decarboxylase delta subunit (MdcD) Amet_3226 PF03390 2-hydroxycarboxylate transporter family Amet_3227 PF08769 Sporulation initiation factor Spo0A C terminal Amet_3227 PF00072 Response regulator receiver domain Amet_3228 PF00512 His Kinase A (phospho-acceptor) domain Amet_3228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3228 PF02743 Cache domain Amet_3229 PF00390 Malic enzyme, N-terminal domain Amet_3229 PF03949 Malic enzyme, NAD binding domain Amet_3230 PF04198 Putative sugar-binding domain Amet_3232 PF00672 HAMP domain Amet_3232 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3232 PF07730 Histidine kinase Amet_3232 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Amet_3240 PF02632 BioY family Amet_3241 PF04055 Radical SAM superfamily Amet_3241 PF06968 Biotin and Thiamin Synthesis associated domain Amet_3242 PF02743 Cache domain Amet_3242 PF00672 HAMP domain Amet_3242 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_3245 PF00350 Dynamin family Amet_3246 PF03448 MgtE intracellular N domain Amet_3246 PF01769 Divalent cation transporter Amet_3246 PF00571 CBS domain Amet_3247 PF00589 Phage integrase family Amet_3247 PF02899 Phage integrase, N-terminal SAM-like domain Amet_3249 PF08447 PAS fold Amet_3249 PF08448 PAS fold Amet_3249 PF00990 Diguanylate cyclase, GGDEF domain Amet_3249 PF00563 EAL domain Amet_3255 PF00072 Response regulator receiver domain Amet_3255 PF02954 Bacterial regulatory protein, Fis family Amet_3255 PF00158 Sigma-54 interaction domain Amet_3256 PF00989 PAS fold Amet_3256 PF00512 His Kinase A (phospho-acceptor) domain Amet_3256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3258 PF00512 His Kinase A (phospho-acceptor) domain Amet_3258 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3258 PF00672 HAMP domain Amet_3259 PF00072 Response regulator receiver domain Amet_3259 PF00486 Transcriptional regulatory protein, C terminal Amet_3262 PF01476 LysM domain Amet_3262 PF00877 NlpC/P60 family Amet_3271 PF00403 Heavy-metal-associated domain Amet_3272 PF00403 Heavy-metal-associated domain Amet_3279 PF01209 ubiE/COQ5 methyltransferase family Amet_3280 PF02310 B12 binding domain Amet_3280 PF04055 Radical SAM superfamily Amet_3282 PF05067 Manganese containing catalase Amet_3290 PF00581 Rhodanese-like domain Amet_3291 PF00581 Rhodanese-like domain Amet_3292 PF00005 ABC transporter Amet_3292 PF08402 TOBE domain Amet_3295 PF13416 Bacterial extracellular solute-binding protein Amet_3297 PF09335 SNARE associated Golgi protein Amet_3299 PF00581 Rhodanese-like domain Amet_3300 PF18766 SWI2/SNF2 ATPase Amet_3300 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Amet_3300 PF11867 Domain of unknown function (DUF3387) Amet_3305 PF02254 TrkA-N domain Amet_3305 PF02080 TrkA-C domain Amet_3307 PF00486 Transcriptional regulatory protein, C terminal Amet_3307 PF00072 Response regulator receiver domain Amet_3308 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3308 PF13493 Domain of unknown function (DUF4118) Amet_3308 PF00512 His Kinase A (phospho-acceptor) domain Amet_3308 PF02702 Osmosensitive K+ channel His kinase sensor domain Amet_3310 PF02386 Cation transport protein Amet_3313 PF13726 Na+-H+ antiporter family Amet_3313 PF03553 Na+/H+ antiporter family Amet_3314 PF04024 PspC domain Amet_3316 PF04854 Protein of unknown function, DUF624 Amet_3317 PF04616 Glycosyl hydrolases family 43 Amet_3317 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain Amet_3318 PF00528 Binding-protein-dependent transport system inner membrane component Amet_3319 PF00528 Binding-protein-dependent transport system inner membrane component Amet_3321 PF00072 Response regulator receiver domain Amet_3321 PF00158 Sigma-54 interaction domain Amet_3321 PF02954 Bacterial regulatory protein, Fis family Amet_3322 PF06580 Histidine kinase Amet_3322 PF00672 HAMP domain Amet_3322 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3322 PF02743 Cache domain Amet_3323 PF17912 MalK OB fold domain Amet_3323 PF03459 TOBE domain Amet_3323 PF00005 ABC transporter Amet_3324 PF17853 GGDEF-like domain Amet_3324 PF13556 PucR C-terminal helix-turn-helix domain Amet_3324 PF05651 Putative sugar diacid recognition Amet_3325 PF02557 D-alanyl-D-alanine carboxypeptidase Amet_3326 PF00156 Phosphoribosyl transferase domain Amet_3327 PF00005 ABC transporter Amet_3327 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_3328 PF00005 ABC transporter Amet_3328 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amet_3330 PF00528 Binding-protein-dependent transport system inner membrane component Amet_3333 PF04060 Putative Fe-S cluster Amet_3334 PF01063 Amino-transferase class IV Amet_3335 PF01171 PP-loop family Amet_3336 PF12848 ABC transporter Amet_3336 PF00005 ABC transporter Amet_3338 PF00557 Metallopeptidase family M24 Amet_3338 PF01321 Creatinase/Prolidase N-terminal domain Amet_3344 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Amet_3344 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Amet_3346 PF01799 [2Fe-2S] binding domain Amet_3346 PF00111 2Fe-2S iron-sulfur cluster binding domain Amet_3348 PF01131 DNA topoisomerase Amet_3348 PF01751 Toprim domain Amet_3350 PF00271 Helicase conserved C-terminal domain Amet_3350 PF00270 DEAD/DEAH box helicase Amet_3355 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system Amet_3359 PF01348 Type II intron maturase Amet_3359 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Amet_3360 PF00239 Resolvase, N terminal domain Amet_3360 PF07508 Recombinase Amet_3360 PF13408 Recombinase zinc beta ribbon domain Amet_3363 PF14319 Transposase zinc-binding domain Amet_3363 PF04986 Putative transposase Amet_3366 PF13302 Acetyltransferase (GNAT) domain Amet_3371 PF00005 ABC transporter Amet_3371 PF12848 ABC transporter Amet_3372 PF00005 ABC transporter Amet_3372 PF16326 ABC transporter C-terminal domain Amet_3372 PF12848 ABC transporter Amet_3373 PF02965 Vitamin B12 dependent methionine synthase, activation domain Amet_3373 PF02310 B12 binding domain Amet_3373 PF00809 Pterin binding enzyme Amet_3373 PF02607 B12 binding domain Amet_3373 PF02574 Homocysteine S-methyltransferase Amet_3375 PF02219 Methylenetetrahydrofolate reductase Amet_3376 PF01053 Cys/Met metabolism PLP-dependent enzyme Amet_3377 PF00188 Cysteine-rich secretory protein family Amet_3378 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Amet_3378 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Amet_3378 PF02142 MGS-like domain Amet_3379 PF00117 Glutamine amidotransferase class-I Amet_3379 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Amet_3380 PF00202 Aminotransferase class-III Amet_3381 PF00696 Amino acid kinase family Amet_3382 PF01960 ArgJ family Amet_3383 PF02774 Semialdehyde dehydrogenase, dimerisation domain Amet_3383 PF01118 Semialdehyde dehydrogenase, NAD binding domain Amet_3384 PF01641 SelR domain Amet_3386 PF03951 Glutamine synthetase, beta-Grasp domain Amet_3386 PF00120 Glutamine synthetase, catalytic domain Amet_3387 PF02637 GatB domain Amet_3387 PF02934 GatB/GatE catalytic domain Amet_3388 PF01425 Amidase Amet_3389 PF02686 Glu-tRNAGln amidotransferase C subunit Amet_3390 PF00152 tRNA synthetases class II (D, K and N) Amet_3390 PF01336 OB-fold nucleic acid binding domain Amet_3391 PF00543 Nitrogen regulatory protein P-II Amet_3392 PF00909 Ammonium Transporter Family Amet_3393 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Amet_3393 PF01411 tRNA synthetases class II (A) Amet_3393 PF02272 DHHA1 domain Amet_3394 PF12323 Helix-turn-helix domain Amet_3394 PF07282 Putative transposase DNA-binding domain Amet_3394 PF01385 Probable transposase Amet_3397 PF04898 Glutamate synthase central domain Amet_3397 PF01645 Conserved region in glutamate synthase Amet_3397 PF01493 GXGXG motif Amet_3397 PF00310 Glutamine amidotransferases class-II Amet_3399 PF05167 Uncharacterised ACR (DUF711) Amet_3400 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Amet_3400 PF00205 Thiamine pyrophosphate enzyme, central domain Amet_3400 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Amet_3402 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Amet_3402 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Amet_3403 PF10369 Small subunit of acetolactate synthase Amet_3404 PF13291 ACT domain Amet_3404 PF00291 Pyridoxal-phosphate dependent enzyme Amet_3406 PF00535 Glycosyl transferase family 2 Amet_3406 PF13181 Tetratricopeptide repeat Amet_3407 PF13840 ACT domain Amet_3407 PF00696 Amino acid kinase family Amet_3408 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Amet_3409 PF04223 Citrate lyase, alpha subunit (CitF) Amet_3410 PF03328 HpcH/HpaI aldolase/citrate lyase family Amet_3411 PF06857 Malonate decarboxylase delta subunit (MdcD) Amet_3412 PF05683 Fumarase C-terminus Amet_3412 PF05681 Fumarate hydratase (Fumerase) Amet_3414 PF05034 Methylaspartate ammonia-lyase N-terminus Amet_3414 PF07476 Methylaspartate ammonia-lyase C-terminus Amet_3415 PF06368 Methylaspartate mutase E chain (MutE) Amet_3416 PF02310 B12 binding domain Amet_3418 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Amet_3418 PF00205 Thiamine pyrophosphate enzyme, central domain Amet_3418 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Amet_3419 PF01842 ACT domain Amet_3420 PF08903 Domain of unknown function (DUF1846) Amet_3426 PF01225 Mur ligase family, catalytic domain Amet_3426 PF02875 Mur ligase family, glutamate ligase domain Amet_3426 PF08245 Mur ligase middle domain Amet_3427 PF00768 D-alanyl-D-alanine carboxypeptidase Amet_3427 PF07943 Penicillin-binding protein 5, C-terminal domain Amet_3436 PF00535 Glycosyl transferase family 2 Amet_3436 PF13181 Tetratricopeptide repeat Amet_3438 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Amet_3439 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Amet_3439 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Amet_3439 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Amet_3441 PF00534 Glycosyl transferases group 1 Amet_3441 PF13439 Glycosyltransferase Family 4 Amet_3442 PF01370 NAD dependent epimerase/dehydratase family Amet_3443 PF01476 LysM domain Amet_3444 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amet_3444 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amet_3445 PF00132 Bacterial transferase hexapeptide (six repeats) Amet_3446 PF14398 YheC/D like ATP-grasp Amet_3450 PF00535 Glycosyl transferase family 2 Amet_3452 PF13439 Glycosyltransferase Family 4 Amet_3452 PF00534 Glycosyl transferases group 1 Amet_3454 PF02645 Uncharacterised protein, DegV family COG1307 Amet_3455 PF00180 Isocitrate/isopropylmalate dehydrogenase Amet_3456 PF00694 Aconitase C-terminal domain Amet_3457 PF00330 Aconitase family (aconitate hydratase) Amet_3460 PF00890 FAD binding domain Amet_3460 PF04205 FMN-binding domain Amet_3460 PF03358 NADPH-dependent FMN reductase Amet_3462 PF04461 Protein of unknown function (DUF520) Amet_3464 PF07308 Protein of unknown function (DUF1456) Amet_3466 PF00210 Ferritin-like domain Amet_3467 PF02028 BCCT, betaine/carnitine/choline family transporter Amet_3468 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Amet_3468 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Amet_3469 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Amet_3469 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Amet_3470 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Amet_3475 PF01478 Type IV leader peptidase family Amet_3475 PF06750 Bacterial Peptidase A24 N-terminal domain Amet_3479 PF08334 Type II secretion system (T2SS), protein G Amet_3479 PF07963 Prokaryotic N-terminal methylation motif Amet_3480 PF00482 Type II secretion system (T2SS), protein F Amet_3481 PF00437 Type II/IV secretion system protein Amet_3482 PF00437 Type II/IV secretion system protein Amet_3483 PF01966 HD domain Amet_3483 PF00072 Response regulator receiver domain Amet_3484 PF02310 B12 binding domain Amet_3484 PF04055 Radical SAM superfamily Amet_3485 PF04055 Radical SAM superfamily Amet_3486 PF13649 Methyltransferase domain Amet_3490 PF00155 Aminotransferase class I and II Amet_3491 PF10672 S-adenosylmethionine-dependent methyltransferase Amet_3491 PF17785 PUA-like domain Amet_3492 PF00009 Elongation factor Tu GTP binding domain Amet_3493 PF01507 Phosphoadenosine phosphosulfate reductase family Amet_3495 PF02910 Fumarate reductase flavoprotein C-term Amet_3495 PF00890 FAD binding domain Amet_3497 PF00939 Sodium:sulfate symporter transmembrane region Amet_3499 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Amet_3499 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Amet_3501 PF00899 ThiF family Amet_3503 PF04073 Aminoacyl-tRNA editing domain Amet_3510 PF01212 Beta-eliminating lyase Amet_3511 PF01970 Tripartite tricarboxylate transporter TctA family Amet_3514 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Amet_3514 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Amet_3515 PF00682 HMGL-like Amet_3517 PF04055 Radical SAM superfamily Amet_3517 PF02579 Dinitrogenase iron-molybdenum cofactor Amet_3518 PF00148 Nitrogenase component 1 type Oxidoreductase Amet_3519 PF00148 Nitrogenase component 1 type Oxidoreductase Amet_3520 PF00148 Nitrogenase component 1 type Oxidoreductase Amet_3521 PF00148 Nitrogenase component 1 type Oxidoreductase Amet_3522 PF00543 Nitrogen regulatory protein P-II Amet_3523 PF00543 Nitrogen regulatory protein P-II Amet_3524 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Amet_3531 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Amet_3533 PF03480 Bacterial extracellular solute-binding protein, family 7 Amet_3534 PF00920 Dehydratase family Amet_3535 PF12833 Helix-turn-helix domain Amet_3535 PF00072 Response regulator receiver domain Amet_3536 PF00512 His Kinase A (phospho-acceptor) domain Amet_3536 PF16750 Sensor domain of 2-component histidine kinase Amet_3536 PF00672 HAMP domain Amet_3536 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3537 PF10091 Putative glucoamylase Amet_3537 PF06165 Glycosyltransferase family 36 Amet_3537 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Amet_3538 PF00483 Nucleotidyl transferase Amet_3539 PF04389 Peptidase family M28 Amet_3541 PF00092 von Willebrand factor type A domain Amet_3543 PF01297 Zinc-uptake complex component A periplasmic Amet_3545 PF02811 PHP domain Amet_3552 PF00005 ABC transporter Amet_3553 PF02687 FtsX-like permease family Amet_3554 PF00005 ABC transporter Amet_3555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3556 PF00486 Transcriptional regulatory protein, C terminal Amet_3556 PF00072 Response regulator receiver domain Amet_3560 PF01695 IstB-like ATP binding protein Amet_3561 PF00665 Integrase core domain Amet_3563 PF04397 LytTr DNA-binding domain Amet_3563 PF00072 Response regulator receiver domain Amet_3567 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3567 PF17203 Single cache domain 3 Amet_3568 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3568 PF17203 Single cache domain 3 Amet_3570 PF01668 SmpB protein Amet_3572 PF08206 Ribonuclease B OB domain Amet_3572 PF17876 Cold shock domain Amet_3572 PF00773 RNB domain Amet_3572 PF00575 S1 RNA binding domain Amet_3574 PF03030 Inorganic H+ pyrophosphatase Amet_3576 PF03952 Enolase, N-terminal domain Amet_3576 PF00113 Enolase, C-terminal TIM barrel domain Amet_3577 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Amet_3577 PF01676 Metalloenzyme superfamily Amet_3578 PF00121 Triosephosphate isomerase Amet_3579 PF00162 Phosphoglycerate kinase Amet_3580 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Amet_3580 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Amet_3581 PF04198 Putative sugar-binding domain Amet_3582 PF04963 Sigma-54 factor, core binding domain Amet_3582 PF04552 Sigma-54, DNA binding domain Amet_3582 PF00309 Sigma-54 factor, Activator interacting domain (AID) Amet_3586 PF04055 Radical SAM superfamily Amet_3587 PF11230 Protein of unknown function (DUF3029) Amet_3588 PF02608 ABC transporter substrate-binding protein PnrA-like Amet_3589 PF02504 Fatty acid synthesis protein Amet_3590 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Amet_3593 PF09338 Glycine/sarcosine/betaine reductase component B subunits Amet_3594 PF00085 Thioredoxin Amet_3595 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amet_3597 PF02645 Uncharacterised protein, DegV family COG1307 Amet_3598 PF00588 SpoU rRNA Methylase family Amet_3601 PF09557 Domain of unknown function (DUF2382) Amet_3601 PF05239 PRC-barrel domain Amet_3602 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amet_3602 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amet_3604 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amet_3604 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Amet_3605 PF00266 Aminotransferase class-V Amet_3607 PF02645 Uncharacterised protein, DegV family COG1307 Amet_3609 PF02872 5'-nucleotidase, C-terminal domain Amet_3609 PF00149 Calcineurin-like phosphoesterase Amet_3610 PF00149 Calcineurin-like phosphoesterase Amet_3610 PF02872 5'-nucleotidase, C-terminal domain Amet_3613 PF01475 Ferric uptake regulator family Amet_3614 PF00155 Aminotransferase class I and II Amet_3615 PF03186 CobD/Cbib protein Amet_3616 PF07685 CobB/CobQ-like glutamine amidotransferase domain Amet_3616 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Amet_3617 PF00005 ABC transporter Amet_3618 PF01032 FecCD transport family Amet_3619 PF01497 Periplasmic binding protein Amet_3620 PF00300 Histidine phosphatase superfamily (branch 1) Amet_3621 PF02654 Cobalamin-5-phosphate synthase Amet_3622 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Amet_3623 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Amet_3626 PF04294 VanW like protein Amet_3627 PF02491 SHS2 domain inserted in FTSA Amet_3628 PF10576 Iron-sulfur binding domain of endonuclease III Amet_3628 PF00633 Helix-hairpin-helix motif Amet_3628 PF00730 HhH-GPD superfamily base excision DNA repair protein Amet_3630 PF00873 AcrB/AcrD/AcrF family Amet_3633 PF10502 Signal peptidase, peptidase S26 Amet_3634 PF00155 Aminotransferase class I and II Amet_3635 PF13654 AAA domain Amet_3635 PF05362 Lon protease (S16) C-terminal proteolytic domain Amet_3636 PF08331 Domain of unknown function (DUF1730) Amet_3637 PF10502 Signal peptidase, peptidase S26 Amet_3642 PF04960 Glutaminase Amet_3643 PF00485 Phosphoribulokinase / Uridine kinase family Amet_3644 PF00571 CBS domain Amet_3645 PF00696 Amino acid kinase family Amet_3646 PF00171 Aldehyde dehydrogenase family Amet_3647 PF10502 Signal peptidase, peptidase S26 Amet_3650 PF13419 Haloacid dehalogenase-like hydrolase Amet_3652 PF02525 Flavodoxin-like fold Amet_3653 PF05067 Manganese containing catalase Amet_3656 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Amet_3657 PF00583 Acetyltransferase (GNAT) family Amet_3659 PF00005 ABC transporter Amet_3660 PF00528 Binding-protein-dependent transport system inner membrane component Amet_3661 PF00497 Bacterial extracellular solute-binding proteins, family 3 Amet_3662 PF00877 NlpC/P60 family Amet_3665 PF01546 Peptidase family M20/M25/M40 Amet_3669 PF02638 Glycosyl hydrolase-like 10 Amet_3671 PF05958 tRNA (Uracil-5-)-methyltransferase Amet_3672 PF01479 S4 domain Amet_3672 PF00849 RNA pseudouridylate synthase Amet_3674 PF01066 CDP-alcohol phosphatidyltransferase Amet_3675 PF01116 Fructose-bisphosphate aldolase class-II Amet_3678 PF04607 Region found in RelA / SpoT proteins Amet_3679 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Amet_3679 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Amet_3682 PF16199 Radical_SAM C-terminal domain Amet_3682 PF04055 Radical SAM superfamily Amet_3686 PF01476 LysM domain Amet_3686 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Amet_3688 PF04070 Domain of unknown function (DUF378) Amet_3690 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Amet_3690 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amet_3692 PF03144 Elongation factor Tu domain 2 Amet_3692 PF00009 Elongation factor Tu GTP binding domain Amet_3692 PF16658 Class II release factor RF3, C-terminal domain Amet_3694 PF00892 EamA-like transporter family Amet_3695 PF00258 Flavodoxin Amet_3697 PF01625 Peptide methionine sulfoxide reductase Amet_3698 PF00990 Diguanylate cyclase, GGDEF domain Amet_3698 PF00072 Response regulator receiver domain Amet_3700 PF00072 Response regulator receiver domain Amet_3702 PF00291 Pyridoxal-phosphate dependent enzyme Amet_3706 PF01053 Cys/Met metabolism PLP-dependent enzyme Amet_3707 PF01053 Cys/Met metabolism PLP-dependent enzyme Amet_3709 PF02875 Mur ligase family, glutamate ligase domain Amet_3709 PF08245 Mur ligase middle domain Amet_3709 PF01225 Mur ligase family, catalytic domain Amet_3710 PF07478 D-ala D-ala ligase C-terminus Amet_3710 PF01820 D-ala D-ala ligase N-terminus Amet_3711 PF00989 PAS fold Amet_3711 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3711 PF16736 Single Cache-like Amet_3711 PF00512 His Kinase A (phospho-acceptor) domain Amet_3712 PF00072 Response regulator receiver domain Amet_3712 PF00486 Transcriptional regulatory protein, C terminal Amet_3715 PF00196 Bacterial regulatory proteins, luxR family Amet_3715 PF00072 Response regulator receiver domain Amet_3716 PF07730 Histidine kinase Amet_3719 PF00005 ABC transporter Amet_3722 PF13545 Crp-like helix-turn-helix domain Amet_3722 PF00027 Cyclic nucleotide-binding domain Amet_3723 PF00258 Flavodoxin Amet_3723 PF00753 Metallo-beta-lactamase superfamily Amet_3725 PF00654 Voltage gated chloride channel Amet_3726 PF04239 Protein of unknown function (DUF421) Amet_3727 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Amet_3728 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Amet_3729 PF03480 Bacterial extracellular solute-binding protein, family 7 Amet_3736 PF08534 Redoxin Amet_3737 PF01546 Peptidase family M20/M25/M40 Amet_3737 PF07687 Peptidase dimerisation domain Amet_3738 PF03601 Conserved hypothetical protein 698 Amet_3739 PF09962 Uncharacterized conserved protein (DUF2196) Amet_3740 PF00892 EamA-like transporter family Amet_3742 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Amet_3744 PF07478 D-ala D-ala ligase C-terminus Amet_3746 PF09861 Lactate racemase N-terminal domain Amet_3747 PF01565 FAD binding domain Amet_3747 PF02913 FAD linked oxidases, C-terminal domain Amet_3748 PF01012 Electron transfer flavoprotein domain Amet_3748 PF00766 Electron transfer flavoprotein FAD-binding domain Amet_3749 PF01012 Electron transfer flavoprotein domain Amet_3750 PF07729 FCD domain Amet_3750 PF00392 Bacterial regulatory proteins, gntR family Amet_3751 PF02652 L-lactate permease Amet_3753 PF00072 Response regulator receiver domain Amet_3753 PF01966 HD domain Amet_3754 PF00672 HAMP domain Amet_3754 PF02743 Cache domain Amet_3754 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_3755 PF00270 DEAD/DEAH box helicase Amet_3755 PF03880 DbpA RNA binding domain Amet_3755 PF00271 Helicase conserved C-terminal domain Amet_3756 PF01636 Phosphotransferase enzyme family Amet_3757 PF01008 Initiation factor 2 subunit family Amet_3758 PF00596 Class II Aldolase and Adducin N-terminal domain Amet_3760 PF01584 CheW-like domain Amet_3762 PF00005 ABC transporter Amet_3763 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Amet_3764 PF03063 Prismane/CO dehydrogenase family Amet_3765 PF13247 4Fe-4S dicluster domain Amet_3766 PF02954 Bacterial regulatory protein, Fis family Amet_3766 PF00989 PAS fold Amet_3766 PF00158 Sigma-54 interaction domain Amet_3767 PF08439 Oligopeptidase F Amet_3767 PF01432 Peptidase family M3 Amet_3769 PF13307 Helicase C-terminal domain Amet_3771 PF00005 ABC transporter Amet_3772 PF01032 FecCD transport family Amet_3773 PF01032 FecCD transport family Amet_3774 PF01497 Periplasmic binding protein Amet_3776 PF01795 MraW methylase family Amet_3777 PF02743 Cache domain Amet_3777 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_3777 PF00672 HAMP domain Amet_3779 PF07517 SecA DEAD-like domain Amet_3779 PF01043 SecA preprotein cross-linking domain Amet_3779 PF07516 SecA Wing and Scaffold domain Amet_3783 PF01232 Mannitol dehydrogenase Rossmann domain Amet_3783 PF08125 Mannitol dehydrogenase C-terminal domain Amet_3784 PF03786 D-mannonate dehydratase (UxuA) Amet_3786 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Amet_3788 PF03480 Bacterial extracellular solute-binding protein, family 7 Amet_3789 PF00392 Bacterial regulatory proteins, gntR family Amet_3789 PF07729 FCD domain Amet_3790 PF04434 SWIM zinc finger Amet_3791 PF00271 Helicase conserved C-terminal domain Amet_3791 PF12419 SNF2 Helicase protein Amet_3791 PF00176 SNF2 family N-terminal domain Amet_3794 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Amet_3794 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Amet_3795 PF00480 ROK family Amet_3796 PF01261 Xylose isomerase-like TIM barrel Amet_3797 PF02653 Branched-chain amino acid transport system / permease component Amet_3798 PF00005 ABC transporter Amet_3799 PF13407 Periplasmic binding protein domain Amet_3800 PF01263 Aldose 1-epimerase Amet_3804 PF04397 LytTr DNA-binding domain Amet_3804 PF00072 Response regulator receiver domain Amet_3805 PF02743 Cache domain Amet_3805 PF00672 HAMP domain Amet_3805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3805 PF06580 Histidine kinase Amet_3806 PF01554 MatE Amet_3807 PF00664 ABC transporter transmembrane region Amet_3807 PF00005 ABC transporter Amet_3808 PF04954 Siderophore-interacting protein Amet_3808 PF00664 ABC transporter transmembrane region Amet_3808 PF00005 ABC transporter Amet_3808 PF08021 Siderophore-interacting FAD-binding domain Amet_3812 PF04542 Sigma-70 region 2 Amet_3812 PF08281 Sigma-70, region 4 Amet_3816 PF01385 Probable transposase Amet_3816 PF12323 Helix-turn-helix domain Amet_3816 PF07282 Putative transposase DNA-binding domain Amet_3818 PF08279 HTH domain Amet_3818 PF13280 WYL domain Amet_3822 PF00936 BMC domain Amet_3823 PF06130 Phosphate propanoyltransferase Amet_3824 PF00465 Iron-containing alcohol dehydrogenase Amet_3824 PF00171 Aldehyde dehydrogenase family Amet_3825 PF00936 BMC domain Amet_3828 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Amet_3828 PF13237 4Fe-4S dicluster domain Amet_3828 PF13375 RnfC Barrel sandwich hybrid domain Amet_3828 PF10531 SLBB domain Amet_3834 PF00936 BMC domain Amet_3835 PF04055 Radical SAM superfamily Amet_3835 PF13187 4Fe-4S dicluster domain Amet_3836 PF01228 Glycine radical Amet_3836 PF02901 Pyruvate formate lyase-like Amet_3837 PF00936 BMC domain Amet_3838 PF00936 BMC domain Amet_3842 PF00465 Iron-containing alcohol dehydrogenase Amet_3843 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3843 PF00672 HAMP domain Amet_3843 PF02743 Cache domain Amet_3843 PF06580 Histidine kinase Amet_3844 PF10114 Sensory domain found in PocR Amet_3844 PF12833 Helix-turn-helix domain Amet_3846 PF12833 Helix-turn-helix domain Amet_3847 PF00005 ABC transporter Amet_3847 PF17755 UvrA DNA-binding domain Amet_3847 PF17760 UvrA interaction domain Amet_3851 PF00440 Bacterial regulatory proteins, tetR family Amet_3851 PF08361 MAATS-type transcriptional repressor, C-terminal region Amet_3854 PF01695 IstB-like ATP binding protein Amet_3855 PF00665 Integrase core domain Amet_3856 PF01169 Uncharacterized protein family UPF0016 Amet_3859 PF04205 FMN-binding domain Amet_3859 PF00890 FAD binding domain Amet_3862 PF00440 Bacterial regulatory proteins, tetR family Amet_3862 PF08361 MAATS-type transcriptional repressor, C-terminal region Amet_3863 PF14537 Cytochrome c3 Amet_3863 PF00890 FAD binding domain Amet_3867 PF00664 ABC transporter transmembrane region Amet_3867 PF00005 ABC transporter Amet_3868 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3868 PF00512 His Kinase A (phospho-acceptor) domain Amet_3876 PF01554 MatE Amet_3881 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_3881 PF02743 Cache domain Amet_3881 PF00672 HAMP domain Amet_3887 PF07690 Major Facilitator Superfamily Amet_3891 PF09861 Lactate racemase N-terminal domain Amet_3892 PF03180 NLPA lipoprotein Amet_3893 PF00528 Binding-protein-dependent transport system inner membrane component Amet_3894 PF09383 NIL domain Amet_3894 PF00005 ABC transporter Amet_3904 PF01061 ABC-2 type transporter Amet_3905 PF00005 ABC transporter Amet_3905 PF13732 Domain of unknown function (DUF4162) Amet_3908 PF00005 ABC transporter Amet_3911 PF01695 IstB-like ATP binding protein Amet_3919 PF01609 Transposase DDE domain Amet_3926 PF00132 Bacterial transferase hexapeptide (six repeats) Amet_3932 PF02535 ZIP Zinc transporter Amet_3934 PF00141 Peroxidase Amet_3935 PF13411 MerR HTH family regulatory protein Amet_3935 PF07739 TipAS antibiotic-recognition domain Amet_3937 PF00005 ABC transporter Amet_3937 PF13732 Domain of unknown function (DUF4162) Amet_3942 PF00005 ABC transporter Amet_3953 PF02687 FtsX-like permease family Amet_3954 PF00005 ABC transporter Amet_3955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_3956 PF00072 Response regulator receiver domain Amet_3956 PF00486 Transcriptional regulatory protein, C terminal Amet_3969 PF03432 Relaxase/Mobilisation nuclease domain Amet_3970 PF00665 Integrase core domain Amet_3971 PF01695 IstB-like ATP binding protein Amet_3975 PF06470 SMC proteins Flexible Hinge Domain Amet_3975 PF02463 RecF/RecN/SMC N terminal domain Amet_3980 PF01476 LysM domain Amet_3980 PF01551 Peptidase family M23 Amet_3993 PF02195 ParB-like nuclease domain Amet_3994 PF13614 AAA domain Amet_3996 PF01758 Sodium Bile acid symporter family Amet_3997 PF00403 Heavy-metal-associated domain Amet_4009 PF01612 3'-5' exonuclease Amet_4009 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Amet_4009 PF00476 DNA polymerase family A Amet_4009 PF01367 5'-3' exonuclease, C-terminal SAM fold Amet_4016 PF05105 Bacteriophage holin family Amet_4030 PF04860 Phage portal protein Amet_4033 PF03354 Phage Terminase Amet_4039 PF01555 DNA methylase Amet_4040 PF02772 S-adenosylmethionine synthetase, central domain Amet_4040 PF00438 S-adenosylmethionine synthetase, N-terminal domain Amet_4040 PF02773 S-adenosylmethionine synthetase, C-terminal domain Amet_4056 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Amet_4056 PF11867 Domain of unknown function (DUF3387) Amet_4056 PF18766 SWI2/SNF2 ATPase Amet_4058 PF02384 N-6 DNA Methylase Amet_4058 PF12161 HsdM N-terminal domain Amet_4060 PF02475 Met-10+ like-protein Amet_4060 PF01938 TRAM domain Amet_4060 PF05958 tRNA (Uracil-5-)-methyltransferase Amet_4064 PF03061 Thioesterase superfamily Amet_4068 PF00224 Pyruvate kinase, barrel domain Amet_4068 PF02887 Pyruvate kinase, alpha/beta domain Amet_4068 PF00391 PEP-utilising enzyme, mobile domain Amet_4069 PF00365 Phosphofructokinase Amet_4071 PF01336 OB-fold nucleic acid binding domain Amet_4071 PF02811 PHP domain Amet_4071 PF14579 Helix-hairpin-helix motif Amet_4071 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Amet_4071 PF07733 Bacterial DNA polymerase III alpha NTPase domain Amet_4073 PF02971 Formiminotransferase domain Amet_4073 PF07837 Formiminotransferase domain, N-terminal subdomain Amet_4075 PF01712 Deoxynucleoside kinase Amet_4076 PF01712 Deoxynucleoside kinase Amet_4080 PF01695 IstB-like ATP binding protein Amet_4081 PF00665 Integrase core domain Amet_4086 PF00989 PAS fold Amet_4086 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_4086 PF17203 Single cache domain 3 Amet_4086 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Amet_4087 PF00072 Response regulator receiver domain Amet_4087 PF00196 Bacterial regulatory proteins, luxR family Amet_4088 PF10298 WhiA N-terminal LAGLIDADG-like domain Amet_4088 PF14527 WhiA LAGLIDADG-like domain Amet_4088 PF02650 WhiA C-terminal HTH domain Amet_4090 PF00293 NUDIX domain Amet_4091 PF01933 Uncharacterised protein family UPF0052 Amet_4092 PF03668 P-loop ATPase protein family Amet_4093 PF01565 FAD binding domain Amet_4093 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Amet_4096 PF04055 Radical SAM superfamily Amet_4096 PF06463 Molybdenum Cofactor Synthesis C Amet_4098 PF01568 Molydopterin dinucleotide binding domain Amet_4098 PF00384 Molybdopterin oxidoreductase Amet_4098 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Amet_4099 PF12838 4Fe-4S dicluster domain Amet_4099 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Amet_4099 PF00384 Molybdopterin oxidoreductase Amet_4099 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Amet_4099 PF01568 Molydopterin dinucleotide binding domain Amet_4100 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Amet_4100 PF00037 4Fe-4S binding domain Amet_4100 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Amet_4103 PF10396 GTP-binding protein TrmE N-terminus Amet_4103 PF01926 50S ribosome-binding GTPase Amet_4103 PF12631 MnmE helical domain Amet_4104 PF06968 Biotin and Thiamin Synthesis associated domain Amet_4104 PF04055 Radical SAM superfamily Amet_4105 PF06968 Biotin and Thiamin Synthesis associated domain Amet_4105 PF04055 Radical SAM superfamily Amet_4107 PF02906 Iron only hydrogenase large subunit, C-terminal domain Amet_4107 PF02256 Iron hydrogenase small subunit Amet_4107 PF00037 4Fe-4S binding domain Amet_4107 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Amet_4108 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Amet_4108 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Amet_4108 PF00037 4Fe-4S binding domain Amet_4111 PF01590 GAF domain Amet_4111 PF02954 Bacterial regulatory protein, Fis family Amet_4111 PF00158 Sigma-54 interaction domain Amet_4112 PF00291 Pyridoxal-phosphate dependent enzyme Amet_4113 PF02734 DAK2 domain Amet_4114 PF02733 Dak1 domain Amet_4115 PF00005 ABC transporter Amet_4116 PF12399 Branched-chain amino acid ATP-binding cassette transporter Amet_4116 PF00005 ABC transporter Amet_4117 PF02653 Branched-chain amino acid transport system / permease component Amet_4117 PF11862 Domain of unknown function (DUF3382) Amet_4118 PF02653 Branched-chain amino acid transport system / permease component Amet_4119 PF13458 Periplasmic binding protein Amet_4121 PF00480 ROK family Amet_4122 PF02603 HPr Serine kinase N terminus Amet_4122 PF07475 HPr Serine kinase C-terminal domain Amet_4123 PF04024 PspC domain Amet_4124 PF12826 Helix-hairpin-helix motif Amet_4124 PF02151 UvrB/uvrC motif Amet_4124 PF01541 GIY-YIG catalytic domain Amet_4124 PF08459 UvrC Helix-hairpin-helix N-terminal Amet_4126 PF17755 UvrA DNA-binding domain Amet_4126 PF17760 UvrA interaction domain Amet_4127 PF02151 UvrB/uvrC motif Amet_4127 PF12344 Ultra-violet resistance protein B Amet_4127 PF17757 UvrB interaction domain Amet_4127 PF04851 Type III restriction enzyme, res subunit Amet_4127 PF00271 Helicase conserved C-terminal domain Amet_4128 PF13180 PDZ domain Amet_4128 PF03572 Peptidase family S41 Amet_4129 PF04225 Opacity-associated protein A LysM-like domain Amet_4129 PF01551 Peptidase family M23 Amet_4130 PF18075 FtsX extracellular domain Amet_4130 PF02687 FtsX-like permease family Amet_4131 PF00005 ABC transporter Amet_4132 PF01812 5-formyltetrahydrofolate cyclo-ligase family Amet_4133 PF05362 Lon protease (S16) C-terminal proteolytic domain Amet_4133 PF13654 AAA domain Amet_4134 PF05257 CHAP domain Amet_4134 PF01476 LysM domain Amet_4138 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Amet_4138 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Amet_4139 PF03808 Glycosyl transferase WecB/TagA/CpsF family Amet_4143 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Amet_4145 PF00842 Alanine racemase, C-terminal domain Amet_4145 PF01168 Alanine racemase, N-terminal domain Amet_4147 PF01648 4'-phosphopantetheinyl transferase superfamily Amet_4150 PF00361 Proton-conducting membrane transporter Amet_4151 PF00361 Proton-conducting membrane transporter Amet_4152 PF00361 Proton-conducting membrane transporter Amet_4154 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Amet_4158 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Amet_4159 PF01899 Na+/H+ ion antiporter subunit Amet_4164 PF00005 ABC transporter Amet_4166 PF00571 CBS domain Amet_4167 PF13175 AAA ATPase domain Amet_4168 PF12320 Type 5 capsule protein repressor C-terminal domain Amet_4168 PF00149 Calcineurin-like phosphoesterase Amet_4169 PF13361 UvrD-like helicase C-terminal domain Amet_4169 PF12705 PD-(D/E)XK nuclease superfamily Amet_4169 PF00580 UvrD/REP helicase N-terminal domain Amet_4172 PF00005 ABC transporter Amet_4172 PF02687 FtsX-like permease family Amet_4172 PF12704 MacB-like periplasmic core domain Amet_4176 PF12705 PD-(D/E)XK nuclease superfamily Amet_4180 PF02915 Rubrerythrin Amet_4181 PF01979 Amidohydrolase family Amet_4182 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Amet_4183 PF03702 Anhydro-N-acetylmuramic acid kinase Amet_4184 PF04794 YdjC-like protein Amet_4185 PF02056 Family 4 glycosyl hydrolase Amet_4185 PF11975 Family 4 glycosyl hydrolase C-terminal domain Amet_4186 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Amet_4187 PF02378 Phosphotransferase system, EIIC Amet_4188 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Amet_4189 PF13580 SIS domain Amet_4190 PF01380 SIS domain Amet_4190 PF01418 Helix-turn-helix domain, rpiR family Amet_4191 PF01869 BadF/BadG/BcrA/BcrD ATPase family Amet_4193 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Amet_4194 PF02056 Family 4 glycosyl hydrolase Amet_4194 PF11975 Family 4 glycosyl hydrolase C-terminal domain Amet_4195 PF02378 Phosphotransferase system, EIIC Amet_4196 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Amet_4197 PF00158 Sigma-54 interaction domain Amet_4197 PF00874 PRD domain Amet_4197 PF03610 PTS system fructose IIA component Amet_4198 PF02666 Phosphatidylserine decarboxylase Amet_4200 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Amet_4200 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Amet_4201 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain Amet_4201 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain Amet_4202 PF00072 Response regulator receiver domain Amet_4202 PF00196 Bacterial regulatory proteins, luxR family Amet_4203 PF07730 Histidine kinase Amet_4206 PF00005 ABC transporter Amet_4207 PF00156 Phosphoribosyl transferase domain Amet_4208 PF01180 Dihydroorotate dehydrogenase Amet_4209 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Amet_4210 PF02142 MGS-like domain Amet_4210 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Amet_4210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Amet_4211 PF00117 Glutamine amidotransferase class-I Amet_4211 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Amet_4212 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Amet_4215 PF04951 D-aminopeptidase Amet_4216 PF11798 IMS family HHH motif Amet_4216 PF00817 impB/mucB/samB family Amet_4216 PF11799 impB/mucB/samB family C-terminal domain Amet_4217 PF01336 OB-fold nucleic acid binding domain Amet_4217 PF00152 tRNA synthetases class II (D, K and N) Amet_4218 PF07690 Major Facilitator Superfamily Amet_4219 PF13411 MerR HTH family regulatory protein Amet_4219 PF07739 TipAS antibiotic-recognition domain Amet_4223 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Amet_4224 PF07451 Stage V sporulation protein AD (SpoVAD) Amet_4225 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Amet_4228 PF01048 Phosphorylase superfamily Amet_4229 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amet_4229 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Amet_4230 PF01554 MatE Amet_4232 PF02581 Thiamine monophosphate synthase Amet_4233 PF01964 Radical SAM ThiC family Amet_4234 PF06968 Biotin and Thiamin Synthesis associated domain Amet_4234 PF04055 Radical SAM superfamily Amet_4235 PF05690 Thiazole biosynthesis protein ThiG Amet_4236 PF00581 Rhodanese-like domain Amet_4236 PF00899 ThiF family Amet_4239 PF10688 Bacterial inner membrane protein Amet_4244 PF03600 Citrate transporter Amet_4245 PF00989 PAS fold Amet_4245 PF02954 Bacterial regulatory protein, Fis family Amet_4245 PF00158 Sigma-54 interaction domain Amet_4246 PF01144 Coenzyme A transferase Amet_4247 PF01144 Coenzyme A transferase Amet_4248 PF00158 Sigma-54 interaction domain Amet_4248 PF02954 Bacterial regulatory protein, Fis family Amet_4248 PF00989 PAS fold Amet_4250 PF08281 Sigma-70, region 4 Amet_4250 PF04542 Sigma-70 region 2 Amet_4252 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain Amet_4252 PF01522 Polysaccharide deacetylase Amet_4253 PF02073 Thermophilic metalloprotease (M29) Amet_4254 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Amet_4254 PF00749 tRNA synthetases class I (E and Q), catalytic domain Amet_4255 PF03167 Uracil DNA glycosylase superfamily Amet_4256 PF01554 MatE Amet_4258 PF01177 Asp/Glu/Hydantoin racemase Amet_4260 PF03006 Haemolysin-III related Amet_4262 PF03631 Virulence factor BrkB Amet_4265 PF02535 ZIP Zinc transporter Amet_4266 PF01329 Pterin 4 alpha carbinolamine dehydratase Amet_4267 PF00107 Zinc-binding dehydrogenase Amet_4267 PF08240 Alcohol dehydrogenase GroES-like domain Amet_4268 PF00294 pfkB family carbohydrate kinase Amet_4269 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Amet_4269 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Amet_4269 PF02378 Phosphotransferase system, EIIC Amet_4270 PF05043 Mga helix-turn-helix domain Amet_4270 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Amet_4270 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Amet_4270 PF00874 PRD domain Amet_4270 PF08279 HTH domain Amet_4271 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Amet_4271 PF02378 Phosphotransferase system, EIIC Amet_4274 PF00180 Isocitrate/isopropylmalate dehydrogenase Amet_4275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amet_4275 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Amet_4275 PF01842 ACT domain Amet_4282 PF00583 Acetyltransferase (GNAT) family Amet_4288 PF01966 HD domain Amet_4290 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Amet_4290 PF01348 Type II intron maturase Amet_4291 PF07508 Recombinase Amet_4291 PF13408 Recombinase zinc beta ribbon domain Amet_4291 PF00239 Resolvase, N terminal domain Amet_4299 PF01380 SIS domain Amet_4300 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Amet_4300 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Amet_4300 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Amet_4300 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Amet_4301 PF02554 Carbon starvation protein CstA Amet_4301 PF13722 5TM C-terminal transporter carbon starvation CstA Amet_4308 PF00871 Acetokinase family Amet_4309 PF01515 Phosphate acetyl/butaryl transferase Amet_4310 PF00871 Acetokinase family Amet_4311 PF00989 PAS fold Amet_4311 PF00158 Sigma-54 interaction domain Amet_4311 PF02954 Bacterial regulatory protein, Fis family Amet_4313 PF02457 DisA bacterial checkpoint controller nucleotide-binding Amet_4316 PF00202 Aminotransferase class-III Amet_4317 PF00202 Aminotransferase class-III Amet_4318 PF07885 Ion channel Amet_4321 PF02659 Putative manganese efflux pump Amet_4323 PF02743 Cache domain Amet_4323 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_4323 PF00512 His Kinase A (phospho-acceptor) domain Amet_4327 PF00633 Helix-hairpin-helix motif Amet_4327 PF00730 HhH-GPD superfamily base excision DNA repair protein Amet_4327 PF14815 NUDIX domain Amet_4328 PF00578 AhpC/TSA family Amet_4329 PF01169 Uncharacterized protein family UPF0016 Amet_4330 PF00462 Glutaredoxin Amet_4334 PF04239 Protein of unknown function (DUF421) Amet_4335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Amet_4336 PF01546 Peptidase family M20/M25/M40 Amet_4336 PF07687 Peptidase dimerisation domain Amet_4337 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Amet_4337 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Amet_4338 PF00171 Aldehyde dehydrogenase family Amet_4339 PF02673 Bacitracin resistance protein BacA Amet_4374 PF01471 Putative peptidoglycan binding domain Amet_4374 PF01520 N-acetylmuramoyl-L-alanine amidase Amet_4384 PF04542 Sigma-70 region 2 Amet_4384 PF04545 Sigma-70, region 4 Amet_4393 PF13401 AAA domain Amet_4393 PF09077 Mu B transposition protein, C terminal Amet_4402 PF04405 Domain of Unknown function (DUF542) Amet_4402 PF01814 Hemerythrin HHE cation binding domain Amet_4403 PF03819 MazG nucleotide pyrophosphohydrolase domain Amet_4405 PF00733 Asparagine synthase Amet_4405 PF13537 Glutamine amidotransferase domain Amet_4406 PF03471 Transporter associated domain Amet_4406 PF00571 CBS domain Amet_4406 PF01595 Cyclin M transmembrane N-terminal domain Amet_4407 PF18698 Histidine kinase sensor domain Amet_4407 PF00989 PAS fold Amet_4407 PF00672 HAMP domain Amet_4407 PF00512 His Kinase A (phospho-acceptor) domain Amet_4407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_4408 PF03734 L,D-transpeptidase catalytic domain Amet_4408 PF01476 LysM domain Amet_4411 PF18698 Histidine kinase sensor domain Amet_4411 PF00512 His Kinase A (phospho-acceptor) domain Amet_4411 PF00672 HAMP domain Amet_4411 PF00989 PAS fold Amet_4411 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_4415 PF02386 Cation transport protein Amet_4416 PF02254 TrkA-N domain Amet_4416 PF02080 TrkA-C domain Amet_4420 PF00563 EAL domain Amet_4420 PF00990 Diguanylate cyclase, GGDEF domain Amet_4420 PF00360 Phytochrome region Amet_4420 PF01590 GAF domain Amet_4423 PF06445 GyrI-like small molecule binding domain Amet_4423 PF13411 MerR HTH family regulatory protein Amet_4424 PF00491 Arginase family Amet_4425 PF04055 Radical SAM superfamily Amet_4426 PF03099 Biotin/lipoate A/B protein ligase family Amet_4431 PF00871 Acetokinase family Amet_4432 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amet_4432 PF03466 LysR substrate binding domain Amet_4433 PF00989 PAS fold Amet_4433 PF00672 HAMP domain Amet_4433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_4433 PF18698 Histidine kinase sensor domain Amet_4433 PF00512 His Kinase A (phospho-acceptor) domain Amet_4435 PF14489 QueF-like protein Amet_4437 PF02915 Rubrerythrin Amet_4438 PF04748 Divergent polysaccharide deacetylase Amet_4440 PF01520 N-acetylmuramoyl-L-alanine amidase Amet_4442 PF00380 Ribosomal protein S9/S16 Amet_4443 PF00572 Ribosomal protein L13 Amet_4444 PF01416 tRNA pseudouridine synthase Amet_4445 PF02361 Cobalt transport protein Amet_4446 PF00005 ABC transporter Amet_4447 PF00005 ABC transporter Amet_4448 PF01196 Ribosomal protein L17 Amet_4449 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Amet_4449 PF01000 RNA polymerase Rpb3/RpoA insert domain Amet_4449 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Amet_4450 PF01479 S4 domain Amet_4450 PF00163 Ribosomal protein S4/S9 N-terminal domain Amet_4451 PF00411 Ribosomal protein S11 Amet_4452 PF00416 Ribosomal protein S13/S18 Amet_4453 PF00444 Ribosomal protein L36 Amet_4454 PF01176 Translation initiation factor 1A / IF-1 Amet_4456 PF00557 Metallopeptidase family M24 Amet_4457 PF05191 Adenylate kinase, active site lid Amet_4458 PF00344 SecY translocase Amet_4459 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Amet_4460 PF00327 Ribosomal protein L30p/L7e Amet_4461 PF00333 Ribosomal protein S5, N-terminal domain Amet_4461 PF03719 Ribosomal protein S5, C-terminal domain Amet_4462 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Amet_4463 PF00347 Ribosomal protein L6 Amet_4464 PF00410 Ribosomal protein S8 Amet_4465 PF00253 Ribosomal protein S14p/S29e Amet_4466 PF00281 Ribosomal protein L5 Amet_4466 PF00673 ribosomal L5P family C-terminus Amet_4467 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Amet_4467 PF00467 KOW motif Amet_4468 PF00238 Ribosomal protein L14p/L23e Amet_4469 PF00366 Ribosomal protein S17 Amet_4470 PF00831 Ribosomal L29 protein Amet_4471 PF00252 Ribosomal protein L16p/L10e Amet_4472 PF00189 Ribosomal protein S3, C-terminal domain Amet_4472 PF07650 KH domain Amet_4473 PF00237 Ribosomal protein L22p/L17e Amet_4474 PF00203 Ribosomal protein S19 Amet_4475 PF03947 Ribosomal Proteins L2, C-terminal domain Amet_4475 PF00181 Ribosomal Proteins L2, RNA binding domain Amet_4476 PF00276 Ribosomal protein L23 Amet_4477 PF00573 Ribosomal protein L4/L1 family Amet_4478 PF00297 Ribosomal protein L3 Amet_4479 PF00338 Ribosomal protein S10p/S20e Amet_4480 PF03143 Elongation factor Tu C-terminal domain Amet_4480 PF00009 Elongation factor Tu GTP binding domain Amet_4480 PF03144 Elongation factor Tu domain 2 Amet_4481 PF03144 Elongation factor Tu domain 2 Amet_4481 PF00009 Elongation factor Tu GTP binding domain Amet_4481 PF00679 Elongation factor G C-terminus Amet_4481 PF14492 Elongation Factor G, domain II Amet_4481 PF03764 Elongation factor G, domain IV Amet_4482 PF00177 Ribosomal protein S7p/S5e Amet_4483 PF00164 Ribosomal protein S12/S23 Amet_4484 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Amet_4485 PF00623 RNA polymerase Rpb1, domain 2 Amet_4485 PF04998 RNA polymerase Rpb1, domain 5 Amet_4485 PF05000 RNA polymerase Rpb1, domain 4 Amet_4485 PF04983 RNA polymerase Rpb1, domain 3 Amet_4485 PF04997 RNA polymerase Rpb1, domain 1 Amet_4486 PF04565 RNA polymerase Rpb2, domain 3 Amet_4486 PF10385 RNA polymerase beta subunit external 1 domain Amet_4486 PF04563 RNA polymerase beta subunit Amet_4486 PF04560 RNA polymerase Rpb2, domain 7 Amet_4486 PF00562 RNA polymerase Rpb2, domain 6 Amet_4486 PF04561 RNA polymerase Rpb2, domain 2 Amet_4487 PF00542 Ribosomal protein L7/L12 C-terminal domain Amet_4487 PF16320 Ribosomal protein L7/L12 dimerisation domain Amet_4488 PF00466 Ribosomal protein L10 Amet_4489 PF00687 Ribosomal protein L1p/L10e family Amet_4490 PF03946 Ribosomal protein L11, N-terminal domain Amet_4490 PF00298 Ribosomal protein L11, RNA binding domain Amet_4491 PF02357 Transcription termination factor nusG Amet_4491 PF00467 KOW motif Amet_4493 PF00471 Ribosomal protein L33 Amet_4494 PF00009 Elongation factor Tu GTP binding domain Amet_4494 PF03144 Elongation factor Tu domain 2 Amet_4494 PF03143 Elongation factor Tu C-terminal domain Amet_4495 PF04542 Sigma-70 region 2 Amet_4495 PF08281 Sigma-70, region 4 Amet_4496 PF05991 YacP-like NYN domain Amet_4497 PF00588 SpoU rRNA Methylase family Amet_4497 PF08032 RNA 2'-O ribose methyltransferase substrate binding Amet_4498 PF02511 Thymidylate synthase complementing protein Amet_4500 PF00636 Ribonuclease III domain Amet_4501 PF01406 tRNA synthetases class I (C) catalytic domain Amet_4501 PF09190 DALR domain Amet_4502 PF00132 Bacterial transferase hexapeptide (six repeats) Amet_4503 PF00749 tRNA synthetases class I (E and Q), catalytic domain Amet_4504 PF06207 Protein of unknown function (DUF1002) Amet_4505 PF02542 YgbB family Amet_4506 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Amet_4508 PF02559 CarD-like/TRCF domain Amet_4510 PF10635 DisA bacterial checkpoint controller linker region Amet_4510 PF12826 Helix-hairpin-helix motif Amet_4510 PF02457 DisA bacterial checkpoint controller nucleotide-binding Amet_4511 PF18073 Rubredoxin metal binding domain Amet_4512 PF00004 ATPase family associated with various cellular activities (AAA) Amet_4512 PF07724 AAA domain (Cdc48 subfamily) Amet_4512 PF17871 AAA lid domain Amet_4512 PF02861 Clp amino terminal domain, pathogenicity island component Amet_4512 PF10431 C-terminal, D2-small domain, of ClpB protein Amet_4513 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Amet_4514 PF02151 UvrB/uvrC motif Amet_4515 PF14492 Elongation Factor G, domain II Amet_4515 PF03764 Elongation factor G, domain IV Amet_4515 PF00679 Elongation factor G C-terminus Amet_4515 PF00009 Elongation factor Tu GTP binding domain Amet_4515 PF03144 Elongation factor Tu domain 2 Amet_4516 PF00155 Aminotransferase class I and II Amet_4517 PF00080 Copper/zinc superoxide dismutase (SODC) Amet_4519 PF00654 Voltage gated chloride channel Amet_4520 PF02867 Ribonucleotide reductase, barrel domain Amet_4520 PF00317 Ribonucleotide reductase, all-alpha domain Amet_4520 PF03477 ATP cone domain Amet_4523 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Amet_4523 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amet_4524 PF00152 tRNA synthetases class II (D, K and N) Amet_4524 PF01336 OB-fold nucleic acid binding domain Amet_4525 PF01272 Transcription elongation factor, GreA/GreB, C-term Amet_4525 PF03449 Transcription elongation factor, N-terminal Amet_4527 PF01207 Dihydrouridine synthase (Dus) Amet_4528 PF03309 Type III pantothenate kinase Amet_4530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_4532 PF01144 Coenzyme A transferase Amet_4533 PF00158 Sigma-54 interaction domain Amet_4533 PF02954 Bacterial regulatory protein, Fis family Amet_4533 PF00989 PAS fold Amet_4534 PF02237 Biotin protein ligase C terminal domain Amet_4534 PF03099 Biotin/lipoate A/B protein ligase family Amet_4534 PF08279 HTH domain Amet_4535 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Amet_4536 PF00364 Biotin-requiring enzyme Amet_4538 PF01039 Carboxyl transferase domain Amet_4541 PF02310 B12 binding domain Amet_4541 PF01642 Methylmalonyl-CoA mutase Amet_4543 PF00004 ATPase family associated with various cellular activities (AAA) Amet_4543 PF17862 AAA+ lid domain Amet_4543 PF01434 Peptidase family M41 Amet_4546 PF00092 von Willebrand factor type A domain Amet_4548 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase Amet_4548 PF02310 B12 binding domain Amet_4549 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit Amet_4550 PF01713 Smr domain Amet_4550 PF00488 MutS domain V Amet_4552 PF12544 Lysine-2,3-aminomutase Amet_4552 PF04055 Radical SAM superfamily Amet_4554 PF02954 Bacterial regulatory protein, Fis family Amet_4554 PF13426 PAS domain Amet_4554 PF00158 Sigma-54 interaction domain Amet_4555 PF01170 Putative RNA methylase family UPF0020 Amet_4555 PF02926 THUMP domain Amet_4558 PF00149 Calcineurin-like phosphoesterase Amet_4560 PF03063 Prismane/CO dehydrogenase family Amet_4561 PF17099 Tryptophan transporter TrpP Amet_4562 PF00155 Aminotransferase class I and II Amet_4563 PF02625 XdhC and CoxI family Amet_4563 PF13478 XdhC Rossmann domain Amet_4564 PF13478 XdhC Rossmann domain Amet_4564 PF02625 XdhC and CoxI family Amet_4565 PF00483 Nucleotidyl transferase Amet_4565 PF14602 Hexapeptide repeat of succinyl-transferase Amet_4565 PF00132 Bacterial transferase hexapeptide (six repeats) Amet_4567 PF01979 Amidohydrolase family Amet_4567 PF13382 Adenine deaminase C-terminal domain Amet_4568 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Amet_4569 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Amet_4569 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Amet_4570 PF01799 [2Fe-2S] binding domain Amet_4570 PF00111 2Fe-2S iron-sulfur cluster binding domain Amet_4571 PF03450 CO dehydrogenase flavoprotein C-terminal domain Amet_4571 PF00941 FAD binding domain in molybdopterin dehydrogenase Amet_4572 PF01979 Amidohydrolase family Amet_4573 PF00860 Permease family Amet_4574 PF01979 Amidohydrolase family Amet_4574 PF13382 Adenine deaminase C-terminal domain Amet_4577 PF00936 BMC domain Amet_4580 PF00936 BMC domain Amet_4581 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Amet_4582 PF02441 Flavoprotein Amet_4584 PF01979 Amidohydrolase family Amet_4585 PF01268 Formate--tetrahydrofolate ligase Amet_4586 PF07837 Formiminotransferase domain, N-terminal subdomain Amet_4586 PF02971 Formiminotransferase domain Amet_4587 PF04199 Putative cyclase Amet_4588 PF17853 GGDEF-like domain Amet_4588 PF13556 PucR C-terminal helix-turn-helix domain Amet_4588 PF05651 Putative sugar diacid recognition Amet_4589 PF04961 Formiminotransferase-cyclodeaminase Amet_4591 PF01820 D-ala D-ala ligase N-terminus Amet_4591 PF07478 D-ala D-ala ligase C-terminus Amet_4592 PF09551 Stage II sporulation protein R (spore_II_R) Amet_4597 PF03845 Spore germination protein Amet_4598 PF03845 Spore germination protein Amet_4600 PF03323 Bacillus/Clostridium GerA spore germination protein Amet_4602 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Amet_4603 PF00392 Bacterial regulatory proteins, gntR family Amet_4603 PF07729 FCD domain Amet_4604 PF08544 GHMP kinases C terminal Amet_4604 PF00288 GHMP kinases N terminal domain Amet_4607 PF00696 Amino acid kinase family Amet_4608 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Amet_4608 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Amet_4610 PF06257 Biofilm formation stimulator VEG Amet_4611 PF08239 Bacterial SH3 domain Amet_4611 PF01520 N-acetylmuramoyl-L-alanine amidase Amet_4612 PF01047 MarR family Amet_4616 PF02789 Cytosol aminopeptidase family, N-terminal domain Amet_4616 PF00883 Cytosol aminopeptidase family, catalytic domain Amet_4619 PF03358 NADPH-dependent FMN reductase Amet_4619 PF00890 FAD binding domain Amet_4619 PF04205 FMN-binding domain Amet_4620 PF01895 PhoU domain Amet_4621 PF00005 ABC transporter Amet_4622 PF00528 Binding-protein-dependent transport system inner membrane component Amet_4623 PF00528 Binding-protein-dependent transport system inner membrane component Amet_4624 PF12849 PBP superfamily domain Amet_4625 PF12706 Beta-lactamase superfamily domain Amet_4626 PF00892 EamA-like transporter family Amet_4627 PF08402 TOBE domain Amet_4627 PF00005 ABC transporter Amet_4628 PF00528 Binding-protein-dependent transport system inner membrane component Amet_4630 PF00108 Thiolase, N-terminal domain Amet_4630 PF02803 Thiolase, C-terminal domain Amet_4632 PF01594 AI-2E family transporter Amet_4633 PF04239 Protein of unknown function (DUF421) Amet_4634 PF01416 tRNA pseudouridine synthase Amet_4638 PF02743 Cache domain Amet_4638 PF00672 HAMP domain Amet_4638 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_4643 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Amet_4643 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain Amet_4644 PF00158 Sigma-54 interaction domain Amet_4644 PF13426 PAS domain Amet_4644 PF02954 Bacterial regulatory protein, Fis family Amet_4646 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Amet_4646 PF00384 Molybdopterin oxidoreductase Amet_4646 PF01568 Molydopterin dinucleotide binding domain Amet_4648 PF02779 Transketolase, pyrimidine binding domain Amet_4648 PF02780 Transketolase, C-terminal domain Amet_4648 PF00456 Transketolase, thiamine diphosphate binding domain Amet_4650 PF07516 SecA Wing and Scaffold domain Amet_4650 PF01043 SecA preprotein cross-linking domain Amet_4650 PF07517 SecA DEAD-like domain Amet_4650 PF02810 SEC-C motif Amet_4651 PF01554 MatE Amet_4653 PF01880 Desulfoferrodoxin Amet_4655 PF13091 PLD-like domain Amet_4655 PF13396 Phospholipase_D-nuclease N-terminal Amet_4657 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Amet_4657 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Amet_4657 PF10371 Domain of unknown function Amet_4657 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Amet_4657 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Amet_4658 PF00005 ABC transporter Amet_4658 PF00664 ABC transporter transmembrane region Amet_4660 PF03590 Aspartate-ammonia ligase Amet_4663 PF01266 FAD dependent oxidoreductase Amet_4663 PF00355 Rieske [2Fe-2S] domain Amet_4665 PF03313 Serine dehydratase alpha chain Amet_4667 PF03060 Nitronate monooxygenase Amet_4670 PF00005 ABC transporter Amet_4671 PF00440 Bacterial regulatory proteins, tetR family Amet_4671 PF17925 Tetracyclin repressor-like, C-terminal domain Amet_4672 PF01624 MutS domain I Amet_4672 PF05188 MutS domain II Amet_4672 PF05192 MutS domain III Amet_4672 PF05190 MutS family domain IV Amet_4672 PF00488 MutS domain V Amet_4675 PF12833 Helix-turn-helix domain Amet_4675 PF02311 AraC-like ligand binding domain Amet_4683 PF04542 Sigma-70 region 2 Amet_4683 PF08281 Sigma-70, region 4 Amet_4684 PF00665 Integrase core domain Amet_4685 PF01695 IstB-like ATP binding protein Amet_4693 PF04542 Sigma-70 region 2 Amet_4693 PF08281 Sigma-70, region 4 Amet_4695 PF09382 RQC domain Amet_4695 PF16124 RecQ zinc-binding Amet_4695 PF00570 HRDC domain Amet_4695 PF00271 Helicase conserved C-terminal domain Amet_4695 PF00270 DEAD/DEAH box helicase Amet_4696 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Amet_4698 PF01479 S4 domain Amet_4698 PF00849 RNA pseudouridylate synthase Amet_4699 PF00271 Helicase conserved C-terminal domain Amet_4699 PF00270 DEAD/DEAH box helicase Amet_4703 PF16868 NMT1-like family Amet_4708 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amet_4708 PF03466 LysR substrate binding domain Amet_4709 PF04143 Sulphur transport Amet_4711 PF04143 Sulphur transport Amet_4714 PF00892 EamA-like transporter family Amet_4715 PF12822 ECF transporter, substrate-specific component Amet_4717 PF00672 HAMP domain Amet_4717 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amet_4717 PF02743 Cache domain Amet_4718 PF00005 ABC transporter Amet_4719 PF00005 ABC transporter Amet_4721 PF00528 Binding-protein-dependent transport system inner membrane component Amet_4722 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amet_4723 PF07690 Major Facilitator Superfamily Amet_4725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Amet_4726 PF13508 Acetyltransferase (GNAT) domain Amet_4726 PF00583 Acetyltransferase (GNAT) family Amet_4727 PF00392 Bacterial regulatory proteins, gntR family Amet_4727 PF00155 Aminotransferase class I and II Amet_4728 PF00892 EamA-like transporter family Amet_4729 PF00072 Response regulator receiver domain Amet_4729 PF00486 Transcriptional regulatory protein, C terminal Amet_4730 PF00512 His Kinase A (phospho-acceptor) domain Amet_4730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_4735 PF05569 BlaR1 peptidase M56 Amet_4735 PF00905 Penicillin binding protein transpeptidase domain Amet_4738 PF17912 MalK OB fold domain Amet_4738 PF00005 ABC transporter Amet_4738 PF03459 TOBE domain Amet_4742 PF00528 Binding-protein-dependent transport system inner membrane component Amet_4743 PF00528 Binding-protein-dependent transport system inner membrane component Amet_4744 PF00005 ABC transporter Amet_4745 PF02687 FtsX-like permease family Amet_4745 PF12704 MacB-like periplasmic core domain Amet_4746 PF00512 His Kinase A (phospho-acceptor) domain Amet_4746 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_4746 PF00672 HAMP domain Amet_4747 PF00072 Response regulator receiver domain Amet_4747 PF00486 Transcriptional regulatory protein, C terminal Amet_4749 PF02590 Predicted SPOUT methyltransferase Amet_4751 PF13180 PDZ domain Amet_4752 PF00753 Metallo-beta-lactamase superfamily Amet_4753 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Amet_4757 PF00512 His Kinase A (phospho-acceptor) domain Amet_4757 PF13426 PAS domain Amet_4757 PF00672 HAMP domain Amet_4757 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amet_4758 PF00486 Transcriptional regulatory protein, C terminal Amet_4758 PF00072 Response regulator receiver domain Amet_4760 PF00082 Subtilase family Amet_4761 PF01476 LysM domain Amet_4761 PF08525 Opacity-associated protein A N-terminal motif Amet_4761 PF01551 Peptidase family M23 Amet_4765 PF00709 Adenylosuccinate synthetase Amet_4768 PF00772 DnaB-like helicase N terminal domain Amet_4768 PF03796 DnaB-like helicase C terminal domain Amet_4769 PF01281 Ribosomal protein L9, N-terminal domain Amet_4769 PF03948 Ribosomal protein L9, C-terminal domain Amet_4770 PF01368 DHH family Amet_4770 PF02272 DHHA1 domain Amet_4773 PF06081 Aromatic acid exporter family member 1 Amet_4774 PF07441 SigmaK-factor processing regulatory protein BofA Amet_4776 PF02562 PhoH-like protein Amet_4776 PF13638 PIN domain Amet_4779 PF02132 RecR protein Amet_4779 PF13662 Toprim domain Amet_4780 PF02575 YbaB/EbfC DNA-binding family Amet_4781 PF12169 DNA polymerase III subunits gamma and tau domain III Amet_4785 PF06866 Protein of unknown function (DUF1256) Amet_4787 PF00781 Diacylglycerol kinase catalytic domain Amet_4789 PF00266 Aminotransferase class-V Amet_4790 PF02567 Phenazine biosynthesis-like protein Amet_4791 PF02195 ParB-like nuclease domain Amet_4791 PF17762 HTH domain found in ParB protein Amet_4792 PF13614 AAA domain Amet_4794 PF02195 ParB-like nuclease domain Amet_4794 PF17762 HTH domain found in ParB protein Amet_4795 PF02527 rRNA small subunit methyltransferase G Amet_4796 PF13932 GidA associated domain Amet_4796 PF01134 Glucose inhibited division protein A Amet_4797 PF01926 50S ribosome-binding GTPase Amet_4797 PF12631 MnmE helical domain Amet_4797 PF10396 GTP-binding protein TrmE N-terminus Amet_4798 PF01424 R3H domain Amet_4798 PF14804 Jag N-terminus Amet_4799 PF02096 60Kd inner membrane protein Amet_4800 PF01809 Putative membrane protein insertion efficiency factor Amet_4801 PF00825 Ribonuclease P Amet_4802 PF00468 Ribosomal protein L34