locus-tag class description Clos_0001 PF08299 Bacterial dnaA protein helix-turn-helix Clos_0001 PF00308 Bacterial dnaA protein Clos_0001 PF11638 DnaA N-terminal domain Clos_0002 PF02767 DNA polymerase III beta subunit, central domain Clos_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Clos_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Clos_0004 PF02463 RecF/RecN/SMC N terminal domain Clos_0005 PF04025 Domain of unknown function (DUF370) Clos_0006 PF01751 Toprim domain Clos_0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0006 PF00986 DNA gyrase B subunit, carboxyl terminus Clos_0006 PF00204 DNA gyrase B Clos_0007 PF03989 DNA gyrase C-terminal domain, beta-propeller Clos_0007 PF00521 DNA gyrase/topoisomerase IV, subunit A Clos_0008 PF01740 STAS domain Clos_0009 PF13581 Histidine kinase-like ATPase domain Clos_0010 PF04542 Sigma-70 region 2 Clos_0010 PF04545 Sigma-70, region 4 Clos_0010 PF04539 Sigma-70 region 3 Clos_0011 PF02829 3H domain Clos_0011 PF08279 HTH domain Clos_0014 PF02403 Seryl-tRNA synthetase N-terminal domain Clos_0014 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clos_0018 PF14437 MafB19-like deaminase Clos_0019 PF03099 Biotin/lipoate A/B protein ligase family Clos_0019 PF10437 Bacterial lipoate protein ligase C-terminus Clos_0022 PF01206 Sulfurtransferase TusA Clos_0025 PF00155 Aminotransferase class I and II Clos_0026 PF00158 Sigma-54 interaction domain Clos_0026 PF02954 Bacterial regulatory protein, Fis family Clos_0026 PF00989 PAS fold Clos_0027 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Clos_0027 PF13237 4Fe-4S dicluster domain Clos_0027 PF13375 RnfC Barrel sandwich hybrid domain Clos_0027 PF10531 SLBB domain Clos_0028 PF09338 Glycine/sarcosine/betaine reductase component B subunits Clos_0031 PF09338 Glycine/sarcosine/betaine reductase component B subunits Clos_0032 PF09338 Glycine/sarcosine/betaine reductase component B subunits Clos_0033 PF05544 Proline racemase Clos_0035 PF01250 Ribosomal protein S6 Clos_0036 PF00436 Single-strand binding protein family Clos_0037 PF01084 Ribosomal protein S18 Clos_0038 PF00005 ABC transporter Clos_0039 PF00005 ABC transporter Clos_0041 PF04397 LytTr DNA-binding domain Clos_0041 PF00072 Response regulator receiver domain Clos_0042 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Clos_0042 PF01488 Shikimate / quinate 5-dehydrogenase Clos_0042 PF08501 Shikimate dehydrogenase substrate binding domain Clos_0044 PF14693 Ribosomal protein TL5, C-terminal domain Clos_0044 PF01386 Ribosomal L25p family Clos_0045 PF01386 Ribosomal L25p family Clos_0045 PF14693 Ribosomal protein TL5, C-terminal domain Clos_0048 PF13426 PAS domain Clos_0048 PF00158 Sigma-54 interaction domain Clos_0048 PF02954 Bacterial regulatory protein, Fis family Clos_0052 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_0052 PF00672 HAMP domain Clos_0052 PF02743 Cache domain Clos_0053 PF02583 Metal-sensitive transcriptional repressor Clos_0054 PF00403 Heavy-metal-associated domain Clos_0056 PF12833 Helix-turn-helix domain Clos_0056 PF02311 AraC-like ligand binding domain Clos_0057 PF02618 YceG-like family Clos_0059 PF01276 Orn/Lys/Arg decarboxylase, major domain Clos_0059 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Clos_0060 PF02223 Thymidylate kinase Clos_0061 PF06153 Cyclic-di-AMP receptor Clos_0062 PF12169 DNA polymerase III subunits gamma and tau domain III Clos_0062 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Clos_0062 PF12170 DNA polymerase III tau subunit V interacting with alpha Clos_0063 PF04468 PSP1 C-terminal conserved region Clos_0064 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Clos_0064 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clos_0065 PF08669 Glycine cleavage T-protein C-terminal barrel domain Clos_0065 PF01571 Aminomethyltransferase folate-binding domain Clos_0066 PF01597 Glycine cleavage H-protein Clos_0067 PF02347 Glycine cleavage system P-protein Clos_0068 PF02347 Glycine cleavage system P-protein Clos_0069 PF02954 Bacterial regulatory protein, Fis family Clos_0069 PF13426 PAS domain Clos_0069 PF00158 Sigma-54 interaction domain Clos_0072 PF00871 Acetokinase family Clos_0073 PF00155 Aminotransferase class I and II Clos_0075 PF00398 Ribosomal RNA adenine dimethylase Clos_0078 PF02219 Methylenetetrahydrofolate reductase Clos_0080 PF02607 B12 binding domain Clos_0080 PF00809 Pterin binding enzyme Clos_0080 PF02574 Homocysteine S-methyltransferase Clos_0080 PF02965 Vitamin B12 dependent methionine synthase, activation domain Clos_0080 PF02310 B12 binding domain Clos_0082 PF03551 Transcriptional regulator PadR-like family Clos_0085 PF00989 PAS fold Clos_0085 PF02954 Bacterial regulatory protein, Fis family Clos_0085 PF00158 Sigma-54 interaction domain Clos_0086 PF01144 Coenzyme A transferase Clos_0088 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Clos_0088 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Clos_0090 PF01575 MaoC like domain Clos_0091 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Clos_0091 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Clos_0091 PF02770 Acyl-CoA dehydrogenase, middle domain Clos_0092 PF01012 Electron transfer flavoprotein domain Clos_0093 PF00766 Electron transfer flavoprotein FAD-binding domain Clos_0093 PF01012 Electron transfer flavoprotein domain Clos_0095 PF00072 Response regulator receiver domain Clos_0095 PF00486 Transcriptional regulatory protein, C terminal Clos_0096 PF00989 PAS fold Clos_0096 PF00512 His Kinase A (phospho-acceptor) domain Clos_0096 PF16736 Single Cache-like Clos_0096 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0101 PF00005 ABC transporter Clos_0101 PF12848 ABC transporter Clos_0113 PF03575 Peptidase family S51 Clos_0120 PF13302 Acetyltransferase (GNAT) domain Clos_0121 PF00486 Transcriptional regulatory protein, C terminal Clos_0121 PF00072 Response regulator receiver domain Clos_0122 PF00005 ABC transporter Clos_0124 PF00512 His Kinase A (phospho-acceptor) domain Clos_0124 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0125 PF09383 NIL domain Clos_0125 PF00005 ABC transporter Clos_0126 PF00528 Binding-protein-dependent transport system inner membrane component Clos_0127 PF00171 Aldehyde dehydrogenase family Clos_0128 PF00696 Amino acid kinase family Clos_0129 PF03807 NADP oxidoreductase coenzyme F420-dependent Clos_0129 PF14748 Pyrroline-5-carboxylate reductase dimerisation Clos_0130 PF10502 Signal peptidase, peptidase S26 Clos_0137 PF10431 C-terminal, D2-small domain, of ClpB protein Clos_0137 PF02861 Clp amino terminal domain, pathogenicity island component Clos_0137 PF17871 AAA lid domain Clos_0137 PF07724 AAA domain (Cdc48 subfamily) Clos_0137 PF00004 ATPase family associated with various cellular activities (AAA) Clos_0139 PF00301 Rubredoxin Clos_0139 PF00753 Metallo-beta-lactamase superfamily Clos_0139 PF00258 Flavodoxin Clos_0141 PF00005 ABC transporter Clos_0142 PF12704 MacB-like periplasmic core domain Clos_0142 PF02687 FtsX-like permease family Clos_0145 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Clos_0145 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Clos_0146 PF12833 Helix-turn-helix domain Clos_0146 PF00730 HhH-GPD superfamily base excision DNA repair protein Clos_0146 PF02805 Metal binding domain of Ada Clos_0146 PF06029 AlkA N-terminal domain Clos_0148 PF02492 CobW/HypB/UreG, nucleotide-binding domain Clos_0149 PF00005 ABC transporter Clos_0152 PF00665 Integrase core domain Clos_0152 PF13333 Integrase core domain Clos_0155 PF01520 N-acetylmuramoyl-L-alanine amidase Clos_0155 PF05036 Sporulation related domain Clos_0163 PF04542 Sigma-70 region 2 Clos_0163 PF08281 Sigma-70, region 4 Clos_0165 PF00378 Enoyl-CoA hydratase/isomerase Clos_0167 PF01144 Coenzyme A transferase Clos_0169 PF01012 Electron transfer flavoprotein domain Clos_0170 PF01012 Electron transfer flavoprotein domain Clos_0170 PF13237 4Fe-4S dicluster domain Clos_0170 PF00766 Electron transfer flavoprotein FAD-binding domain Clos_0171 PF02954 Bacterial regulatory protein, Fis family Clos_0171 PF00158 Sigma-54 interaction domain Clos_0171 PF00989 PAS fold Clos_0173 PF01266 FAD dependent oxidoreductase Clos_0173 PF00355 Rieske [2Fe-2S] domain Clos_0176 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Clos_0176 PF00749 tRNA synthetases class I (E and Q), catalytic domain Clos_0177 PF01554 MatE Clos_0178 PF04205 FMN-binding domain Clos_0178 PF00890 FAD binding domain Clos_0179 PF02743 Cache domain Clos_0179 PF00672 HAMP domain Clos_0179 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0179 PF06580 Histidine kinase Clos_0180 PF12833 Helix-turn-helix domain Clos_0180 PF00072 Response regulator receiver domain Clos_0182 PF08525 Opacity-associated protein A N-terminal motif Clos_0182 PF01551 Peptidase family M23 Clos_0182 PF01476 LysM domain Clos_0183 PF00497 Bacterial extracellular solute-binding proteins, family 3 Clos_0184 PF00528 Binding-protein-dependent transport system inner membrane component Clos_0185 PF00005 ABC transporter Clos_0186 PF02743 Cache domain Clos_0186 PF00672 HAMP domain Clos_0186 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_0187 PF02954 Bacterial regulatory protein, Fis family Clos_0187 PF13426 PAS domain Clos_0187 PF00158 Sigma-54 interaction domain Clos_0188 PF01235 Sodium:alanine symporter family Clos_0189 PF01546 Peptidase family M20/M25/M40 Clos_0190 PF03591 AzlC protein Clos_0191 PF05437 Branched-chain amino acid transport protein (AzlD) Clos_0193 PF00150 Cellulase (glycosyl hydrolase family 5) Clos_0193 PF00395 S-layer homology domain Clos_0193 PF03424 Carbohydrate binding domain (family 17/28) Clos_0196 PF00005 ABC transporter Clos_0203 PF08447 PAS fold Clos_0203 PF00512 His Kinase A (phospho-acceptor) domain Clos_0203 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0203 PF00989 PAS fold Clos_0204 PF00158 Sigma-54 interaction domain Clos_0204 PF00072 Response regulator receiver domain Clos_0204 PF02954 Bacterial regulatory protein, Fis family Clos_0207 PF13247 4Fe-4S dicluster domain Clos_0208 PF12804 MobA-like NTP transferase domain Clos_0209 PF01645 Conserved region in glutamate synthase Clos_0209 PF13187 4Fe-4S dicluster domain Clos_0210 PF03453 MoeA N-terminal region (domain I and II) Clos_0210 PF03454 MoeA C-terminal region (domain IV) Clos_0210 PF00994 Probable molybdopterin binding domain Clos_0214 PF00005 ABC transporter Clos_0217 PF06968 Biotin and Thiamin Synthesis associated domain Clos_0217 PF04055 Radical SAM superfamily Clos_0221 PF02492 CobW/HypB/UreG, nucleotide-binding domain Clos_0222 PF12704 MacB-like periplasmic core domain Clos_0222 PF02687 FtsX-like permease family Clos_0222 PF00005 ABC transporter Clos_0227 PF00491 Arginase family Clos_0228 PF13145 PPIC-type PPIASE domain Clos_0229 PF08439 Oligopeptidase F Clos_0229 PF01432 Peptidase family M3 Clos_0230 PF00072 Response regulator receiver domain Clos_0230 PF00486 Transcriptional regulatory protein, C terminal Clos_0231 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0231 PF00672 HAMP domain Clos_0231 PF00512 His Kinase A (phospho-acceptor) domain Clos_0231 PF00989 PAS fold Clos_0231 PF18698 Histidine kinase sensor domain Clos_0233 PF00664 ABC transporter transmembrane region Clos_0233 PF00005 ABC transporter Clos_0237 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Clos_0237 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Clos_0237 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Clos_0237 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clos_0237 PF10371 Domain of unknown function Clos_0238 PF13396 Phospholipase_D-nuclease N-terminal Clos_0238 PF13091 PLD-like domain Clos_0239 PF01880 Desulfoferrodoxin Clos_0241 PF02743 Cache domain Clos_0241 PF00672 HAMP domain Clos_0241 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_0244 PF01554 MatE Clos_0245 PF01568 Molydopterin dinucleotide binding domain Clos_0245 PF00384 Molybdopterin oxidoreductase Clos_0245 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Clos_0249 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Clos_0249 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Clos_0250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_0250 PF02743 Cache domain Clos_0250 PF00672 HAMP domain Clos_0254 PF02659 Putative manganese efflux pump Clos_0255 PF01699 Sodium/calcium exchanger protein Clos_0256 PF01594 AI-2E family transporter Clos_0258 PF00108 Thiolase, N-terminal domain Clos_0258 PF02803 Thiolase, C-terminal domain Clos_0259 PF00892 EamA-like transporter family Clos_0260 PF00534 Glycosyl transferases group 1 Clos_0260 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase Clos_0262 PF00111 2Fe-2S iron-sulfur cluster binding domain Clos_0262 PF01799 [2Fe-2S] binding domain Clos_0264 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Clos_0264 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Clos_0265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_0265 PF00672 HAMP domain Clos_0265 PF02743 Cache domain Clos_0266 PF12849 PBP superfamily domain Clos_0267 PF00528 Binding-protein-dependent transport system inner membrane component Clos_0268 PF00528 Binding-protein-dependent transport system inner membrane component Clos_0269 PF00005 ABC transporter Clos_0270 PF01895 PhoU domain Clos_0273 PF00890 FAD binding domain Clos_0273 PF04205 FMN-binding domain Clos_0276 PF00037 4Fe-4S binding domain Clos_0276 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Clos_0276 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Clos_0277 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Clos_0277 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Clos_0277 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clos_0278 PF02789 Cytosol aminopeptidase family, N-terminal domain Clos_0278 PF00883 Cytosol aminopeptidase family, catalytic domain Clos_0281 PF08486 Stage II sporulation protein Clos_0282 PF06257 Biofilm formation stimulator VEG Clos_0283 PF01541 GIY-YIG catalytic domain Clos_0285 PF00288 GHMP kinases N terminal domain Clos_0285 PF08544 GHMP kinases C terminal Clos_0286 PF00392 Bacterial regulatory proteins, gntR family Clos_0286 PF07729 FCD domain Clos_0288 PF03323 Bacillus/Clostridium GerA spore germination protein Clos_0289 PF03845 Spore germination protein Clos_0290 PF05504 Spore germination B3/ GerAC like, C-terminal Clos_0291 PF09551 Stage II sporulation protein R (spore_II_R) Clos_0295 PF05651 Putative sugar diacid recognition Clos_0295 PF17853 GGDEF-like domain Clos_0295 PF13556 PucR C-terminal helix-turn-helix domain Clos_0296 PF00578 AhpC/TSA family Clos_0297 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Clos_0297 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Clos_0298 PF08245 Mur ligase middle domain Clos_0298 PF02875 Mur ligase family, glutamate ligase domain Clos_0298 PF01225 Mur ligase family, catalytic domain Clos_0299 PF07687 Peptidase dimerisation domain Clos_0299 PF01546 Peptidase family M20/M25/M40 Clos_0300 PF00188 Cysteine-rich secretory protein family Clos_0303 PF00528 Binding-protein-dependent transport system inner membrane component Clos_0304 PF00005 ABC transporter Clos_0305 PF03692 Putative zinc- or iron-chelating domain Clos_0307 PF12833 Helix-turn-helix domain Clos_0307 PF17853 GGDEF-like domain Clos_0309 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Clos_0311 PF01032 FecCD transport family Clos_0312 PF00005 ABC transporter Clos_0313 PF11844 Domain of unknown function (DUF3364) Clos_0313 PF00148 Nitrogenase component 1 type Oxidoreductase Clos_0317 PF03323 Bacillus/Clostridium GerA spore germination protein Clos_0319 PF01032 FecCD transport family Clos_0320 PF00005 ABC transporter Clos_0321 PF00005 ABC transporter Clos_0322 PF01061 ABC-2 type transporter Clos_0323 PF06180 Cobalt chelatase (CbiK) Clos_0324 PF00486 Transcriptional regulatory protein, C terminal Clos_0324 PF00072 Response regulator receiver domain Clos_0325 PF18698 Histidine kinase sensor domain Clos_0325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0325 PF00989 PAS fold Clos_0325 PF00672 HAMP domain Clos_0325 PF00512 His Kinase A (phospho-acceptor) domain Clos_0326 PF02142 MGS-like domain Clos_0331 PF01554 MatE Clos_0332 PF12787 EcsC protein family Clos_0333 PF00291 Pyridoxal-phosphate dependent enzyme Clos_0337 PF01261 Xylose isomerase-like TIM barrel Clos_0340 PF01636 Phosphotransferase enzyme family Clos_0341 PF13302 Acetyltransferase (GNAT) domain Clos_0348 PF13673 Acetyltransferase (GNAT) domain Clos_0349 PF17676 LD-carboxypeptidase C-terminal domain Clos_0349 PF02016 LD-carboxypeptidase N-terminal domain Clos_0354 PF02743 Cache domain Clos_0354 PF00672 HAMP domain Clos_0354 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_0355 PF00753 Metallo-beta-lactamase superfamily Clos_0359 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Clos_0360 PF04199 Putative cyclase Clos_0362 PF01979 Amidohydrolase family Clos_0363 PF00857 Isochorismatase family Clos_0364 PF02441 Flavoprotein Clos_0365 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Clos_0366 PF00936 BMC domain Clos_0368 PF00936 BMC domain Clos_0369 PF00936 BMC domain Clos_0372 PF01979 Amidohydrolase family Clos_0372 PF13382 Adenine deaminase C-terminal domain Clos_0373 PF00860 Permease family Clos_0374 PF01979 Amidohydrolase family Clos_0375 PF03450 CO dehydrogenase flavoprotein C-terminal domain Clos_0375 PF00941 FAD binding domain in molybdopterin dehydrogenase Clos_0376 PF00111 2Fe-2S iron-sulfur cluster binding domain Clos_0376 PF01799 [2Fe-2S] binding domain Clos_0377 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Clos_0377 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Clos_0378 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Clos_0379 PF13382 Adenine deaminase C-terminal domain Clos_0379 PF01979 Amidohydrolase family Clos_0382 PF02675 S-adenosylmethionine decarboxylase Clos_0383 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Clos_0383 PF01276 Orn/Lys/Arg decarboxylase, major domain Clos_0384 PF17284 Spermidine synthase tetramerisation domain Clos_0385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_0385 PF00672 HAMP domain Clos_0386 PF03061 Thioesterase superfamily Clos_0388 PF00072 Response regulator receiver domain Clos_0388 PF00486 Transcriptional regulatory protein, C terminal Clos_0389 PF00072 Response regulator receiver domain Clos_0389 PF00512 His Kinase A (phospho-acceptor) domain Clos_0389 PF08448 PAS fold Clos_0389 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0389 PF13188 PAS domain Clos_0390 PF00890 FAD binding domain Clos_0390 PF14537 Cytochrome c3 Clos_0391 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Clos_0393 PF17099 Tryptophan transporter TrpP Clos_0394 PF00364 Biotin-requiring enzyme Clos_0395 PF00289 Biotin carboxylase, N-terminal domain Clos_0395 PF02785 Biotin carboxylase C-terminal domain Clos_0395 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Clos_0396 PF01039 Carboxyl transferase domain Clos_0397 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Clos_0398 PF00581 Rhodanese-like domain Clos_0399 PF03006 Haemolysin-III related Clos_0401 PF17676 LD-carboxypeptidase C-terminal domain Clos_0401 PF02016 LD-carboxypeptidase N-terminal domain Clos_0402 PF01546 Peptidase family M20/M25/M40 Clos_0402 PF07687 Peptidase dimerisation domain Clos_0404 PF13686 DsrE/DsrF/DrsH-like family Clos_0405 PF00266 Aminotransferase class-V Clos_0407 PF01063 Amino-transferase class IV Clos_0408 PF00704 Glycosyl hydrolases family 18 Clos_0408 PF01476 LysM domain Clos_0410 PF00990 Diguanylate cyclase, GGDEF domain Clos_0410 PF17156 Gammaproteobacterial periplasmic sensor domain Clos_0411 PF01170 Putative RNA methylase family UPF0020 Clos_0411 PF02926 THUMP domain Clos_0414 PF00890 FAD binding domain Clos_0414 PF04205 FMN-binding domain Clos_0414 PF03358 NADPH-dependent FMN reductase Clos_0415 PF00149 Calcineurin-like phosphoesterase Clos_0416 PF13426 PAS domain Clos_0416 PF02954 Bacterial regulatory protein, Fis family Clos_0416 PF00158 Sigma-54 interaction domain Clos_0418 PF12544 Lysine-2,3-aminomutase Clos_0418 PF04055 Radical SAM superfamily Clos_0420 PF01624 MutS domain I Clos_0420 PF05188 MutS domain II Clos_0420 PF05192 MutS domain III Clos_0420 PF05190 MutS family domain IV Clos_0420 PF00488 MutS domain V Clos_0421 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit Clos_0422 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase Clos_0422 PF02310 B12 binding domain Clos_0426 PF04397 LytTr DNA-binding domain Clos_0426 PF00072 Response regulator receiver domain Clos_0430 PF03793 PASTA domain Clos_0430 PF00069 Protein kinase domain Clos_0432 PF00004 ATPase family associated with various cellular activities (AAA) Clos_0432 PF17862 AAA+ lid domain Clos_0432 PF01434 Peptidase family M41 Clos_0433 PF06826 Predicted Permease Membrane Region Clos_0433 PF02080 TrkA-C domain Clos_0435 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Clos_0435 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Clos_0436 PF01642 Methylmalonyl-CoA mutase Clos_0436 PF02310 B12 binding domain Clos_0437 PF02310 B12 binding domain Clos_0437 PF01642 Methylmalonyl-CoA mutase Clos_0440 PF01039 Carboxyl transferase domain Clos_0442 PF00364 Biotin-requiring enzyme Clos_0443 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Clos_0444 PF08279 HTH domain Clos_0444 PF03099 Biotin/lipoate A/B protein ligase family Clos_0444 PF02237 Biotin protein ligase C terminal domain Clos_0446 PF03309 Type III pantothenate kinase Clos_0447 PF01207 Dihydrouridine synthase (Dus) Clos_0449 PF01272 Transcription elongation factor, GreA/GreB, C-term Clos_0449 PF03449 Transcription elongation factor, N-terminal Clos_0450 PF01336 OB-fold nucleic acid binding domain Clos_0450 PF00152 tRNA synthetases class II (D, K and N) Clos_0452 PF02867 Ribonucleotide reductase, barrel domain Clos_0452 PF17975 Ribonucleotide reductase alpha domain Clos_0453 PF00009 Elongation factor Tu GTP binding domain Clos_0453 PF14492 Elongation Factor G, domain II Clos_0453 PF03764 Elongation factor G, domain IV Clos_0453 PF03144 Elongation factor Tu domain 2 Clos_0453 PF00679 Elongation factor G C-terminus Clos_0454 PF02151 UvrB/uvrC motif Clos_0455 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Clos_0456 PF02861 Clp amino terminal domain, pathogenicity island component Clos_0456 PF00004 ATPase family associated with various cellular activities (AAA) Clos_0456 PF07724 AAA domain (Cdc48 subfamily) Clos_0456 PF17871 AAA lid domain Clos_0456 PF10431 C-terminal, D2-small domain, of ClpB protein Clos_0457 PF18073 Rubredoxin metal binding domain Clos_0458 PF10635 DisA bacterial checkpoint controller linker region Clos_0458 PF02457 DisA bacterial checkpoint controller nucleotide-binding Clos_0460 PF02559 CarD-like/TRCF domain Clos_0462 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Clos_0462 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Clos_0463 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Clos_0464 PF02542 YgbB family Clos_0465 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clos_0465 PF09180 Prolyl-tRNA synthetase, C-terminal Clos_0465 PF03129 Anticodon binding domain Clos_0466 PF06207 Protein of unknown function (DUF1002) Clos_0467 PF00749 tRNA synthetases class I (E and Q), catalytic domain Clos_0468 PF06426 Serine acetyltransferase, N-terminal Clos_0468 PF00132 Bacterial transferase hexapeptide (six repeats) Clos_0469 PF01406 tRNA synthetases class I (C) catalytic domain Clos_0469 PF09190 DALR domain Clos_0470 PF00636 Ribonuclease III domain Clos_0472 PF02511 Thymidylate synthase complementing protein Clos_0473 PF00588 SpoU rRNA Methylase family Clos_0473 PF08032 RNA 2'-O ribose methyltransferase substrate binding Clos_0474 PF05991 YacP-like NYN domain Clos_0475 PF04542 Sigma-70 region 2 Clos_0475 PF08281 Sigma-70, region 4 Clos_0476 PF03143 Elongation factor Tu C-terminal domain Clos_0476 PF03144 Elongation factor Tu domain 2 Clos_0476 PF00009 Elongation factor Tu GTP binding domain Clos_0477 PF00471 Ribosomal protein L33 Clos_0479 PF02357 Transcription termination factor nusG Clos_0479 PF00467 KOW motif Clos_0480 PF00298 Ribosomal protein L11, RNA binding domain Clos_0480 PF03946 Ribosomal protein L11, N-terminal domain Clos_0481 PF00687 Ribosomal protein L1p/L10e family Clos_0482 PF00466 Ribosomal protein L10 Clos_0483 PF16320 Ribosomal protein L7/L12 dimerisation domain Clos_0483 PF00542 Ribosomal protein L7/L12 C-terminal domain Clos_0484 PF04560 RNA polymerase Rpb2, domain 7 Clos_0484 PF10385 RNA polymerase beta subunit external 1 domain Clos_0484 PF04565 RNA polymerase Rpb2, domain 3 Clos_0484 PF00562 RNA polymerase Rpb2, domain 6 Clos_0484 PF04563 RNA polymerase beta subunit Clos_0484 PF04561 RNA polymerase Rpb2, domain 2 Clos_0485 PF04998 RNA polymerase Rpb1, domain 5 Clos_0485 PF04997 RNA polymerase Rpb1, domain 1 Clos_0485 PF00623 RNA polymerase Rpb1, domain 2 Clos_0485 PF04983 RNA polymerase Rpb1, domain 3 Clos_0485 PF05000 RNA polymerase Rpb1, domain 4 Clos_0486 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Clos_0487 PF00164 Ribosomal protein S12/S23 Clos_0488 PF00177 Ribosomal protein S7p/S5e Clos_0489 PF00009 Elongation factor Tu GTP binding domain Clos_0489 PF00679 Elongation factor G C-terminus Clos_0489 PF03764 Elongation factor G, domain IV Clos_0489 PF03144 Elongation factor Tu domain 2 Clos_0489 PF14492 Elongation Factor G, domain II Clos_0490 PF03144 Elongation factor Tu domain 2 Clos_0490 PF03143 Elongation factor Tu C-terminal domain Clos_0490 PF00009 Elongation factor Tu GTP binding domain Clos_0491 PF00338 Ribosomal protein S10p/S20e Clos_0492 PF00297 Ribosomal protein L3 Clos_0493 PF00573 Ribosomal protein L4/L1 family Clos_0494 PF00276 Ribosomal protein L23 Clos_0495 PF00181 Ribosomal Proteins L2, RNA binding domain Clos_0495 PF03947 Ribosomal Proteins L2, C-terminal domain Clos_0496 PF00203 Ribosomal protein S19 Clos_0497 PF00237 Ribosomal protein L22p/L17e Clos_0498 PF00189 Ribosomal protein S3, C-terminal domain Clos_0498 PF07650 KH domain Clos_0499 PF00252 Ribosomal protein L16p/L10e Clos_0500 PF00831 Ribosomal L29 protein Clos_0501 PF00366 Ribosomal protein S17 Clos_0502 PF00238 Ribosomal protein L14p/L23e Clos_0503 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Clos_0503 PF00467 KOW motif Clos_0504 PF00673 ribosomal L5P family C-terminus Clos_0504 PF00281 Ribosomal protein L5 Clos_0505 PF00253 Ribosomal protein S14p/S29e Clos_0506 PF00410 Ribosomal protein S8 Clos_0507 PF00347 Ribosomal protein L6 Clos_0508 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Clos_0509 PF00333 Ribosomal protein S5, N-terminal domain Clos_0509 PF03719 Ribosomal protein S5, C-terminal domain Clos_0510 PF00327 Ribosomal protein L30p/L7e Clos_0511 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Clos_0512 PF00344 SecY translocase Clos_0513 PF05191 Adenylate kinase, active site lid Clos_0514 PF00557 Metallopeptidase family M24 Clos_0516 PF01176 Translation initiation factor 1A / IF-1 Clos_0517 PF00444 Ribosomal protein L36 Clos_0518 PF00416 Ribosomal protein S13/S18 Clos_0519 PF00411 Ribosomal protein S11 Clos_0520 PF00163 Ribosomal protein S4/S9 N-terminal domain Clos_0520 PF01479 S4 domain Clos_0521 PF01000 RNA polymerase Rpb3/RpoA insert domain Clos_0521 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Clos_0521 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Clos_0522 PF01196 Ribosomal protein L17 Clos_0523 PF00005 ABC transporter Clos_0524 PF00005 ABC transporter Clos_0525 PF02361 Cobalt transport protein Clos_0526 PF01416 tRNA pseudouridine synthase Clos_0527 PF00572 Ribosomal protein L13 Clos_0528 PF00380 Ribosomal protein S9/S16 Clos_0530 PF01520 N-acetylmuramoyl-L-alanine amidase Clos_0530 PF08239 Bacterial SH3 domain Clos_0532 PF10609 NUBPL iron-transfer P-loop NTPase Clos_0533 PF00478 IMP dehydrogenase / GMP reductase domain Clos_0533 PF00571 CBS domain Clos_0534 PF00117 Glutamine amidotransferase class-I Clos_0534 PF00958 GMP synthase C terminal domain Clos_0534 PF02540 NAD synthase Clos_0535 PF00860 Permease family Clos_0536 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Clos_0536 PF02222 ATP-grasp domain Clos_0537 PF00731 AIR carboxylase Clos_0538 PF00156 Phosphoribosyl transferase domain Clos_0539 PF00586 AIR synthase related protein, N-terminal domain Clos_0539 PF02769 AIR synthase related protein, C-terminal domain Clos_0540 PF00551 Formyl transferase Clos_0541 PF02142 MGS-like domain Clos_0541 PF01808 AICARFT/IMPCHase bienzyme Clos_0542 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Clos_0542 PF02843 Phosphoribosylglycinamide synthetase, C domain Clos_0542 PF02844 Phosphoribosylglycinamide synthetase, N domain Clos_0543 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_0543 PF02743 Cache domain Clos_0543 PF00672 HAMP domain Clos_0544 PF03180 NLPA lipoprotein Clos_0545 PF13840 ACT domain Clos_0545 PF00696 Amino acid kinase family Clos_0546 PF00375 Sodium:dicarboxylate symporter family Clos_0547 PF01177 Asp/Glu/Hydantoin racemase Clos_0548 PF02416 mttA/Hcf106 family Clos_0549 PF00580 UvrD/REP helicase N-terminal domain Clos_0549 PF13361 UvrD-like helicase C-terminal domain Clos_0550 PF00533 BRCA1 C Terminus (BRCT) domain Clos_0550 PF01653 NAD-dependent DNA ligase adenylation domain Clos_0550 PF12826 Helix-hairpin-helix motif Clos_0550 PF03120 NAD-dependent DNA ligase OB-fold domain Clos_0554 PF00395 S-layer homology domain Clos_0554 PF01520 N-acetylmuramoyl-L-alanine amidase Clos_0555 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Clos_0557 PF03725 3' exoribonuclease family, domain 2 Clos_0557 PF01138 3' exoribonuclease family, domain 1 Clos_0558 PF01725 Ham1 family Clos_0559 PF12850 Calcineurin-like phosphoesterase superfamily domain Clos_0562 PF02586 SOS response associated peptidase (SRAP) Clos_0567 PF01546 Peptidase family M20/M25/M40 Clos_0567 PF07687 Peptidase dimerisation domain Clos_0569 PF02634 FdhD/NarQ family Clos_0570 PF04055 Radical SAM superfamily Clos_0570 PF06463 Molybdenum Cofactor Synthesis C Clos_0573 PF01565 FAD binding domain Clos_0573 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Clos_0574 PF03668 P-loop ATPase protein family Clos_0575 PF01933 Uncharacterised protein family UPF0052 Clos_0576 PF00860 Permease family Clos_0577 PF00293 NUDIX domain Clos_0578 PF10298 WhiA N-terminal LAGLIDADG-like domain Clos_0578 PF02650 WhiA C-terminal HTH domain Clos_0578 PF14527 WhiA LAGLIDADG-like domain Clos_0580 PF02971 Formiminotransferase domain Clos_0580 PF07837 Formiminotransferase domain, N-terminal subdomain Clos_0582 PF18693 TRAM domain Clos_0582 PF04055 Radical SAM superfamily Clos_0582 PF00919 Uncharacterized protein family UPF0004 Clos_0583 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Clos_0583 PF07733 Bacterial DNA polymerase III alpha NTPase domain Clos_0583 PF01336 OB-fold nucleic acid binding domain Clos_0583 PF02811 PHP domain Clos_0583 PF14579 Helix-hairpin-helix motif Clos_0585 PF00365 Phosphofructokinase Clos_0586 PF00391 PEP-utilising enzyme, mobile domain Clos_0586 PF02887 Pyruvate kinase, alpha/beta domain Clos_0586 PF00224 Pyruvate kinase, barrel domain Clos_0587 PF00440 Bacterial regulatory proteins, tetR family Clos_0587 PF08359 YsiA-like protein, C-terminal region Clos_0588 PF03358 NADPH-dependent FMN reductase Clos_0588 PF04205 FMN-binding domain Clos_0588 PF00890 FAD binding domain Clos_0590 PF05958 tRNA (Uracil-5-)-methyltransferase Clos_0590 PF01938 TRAM domain Clos_0592 PF02824 TGS domain Clos_0592 PF13291 ACT domain Clos_0592 PF04607 Region found in RelA / SpoT proteins Clos_0595 PF13333 Integrase core domain Clos_0595 PF00665 Integrase core domain Clos_0599 PF00355 Rieske [2Fe-2S] domain Clos_0602 PF12728 Helix-turn-helix domain Clos_0602 PF12727 PBP superfamily domain Clos_0604 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Clos_0604 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Clos_0610 PF02702 Osmosensitive K+ channel His kinase sensor domain Clos_0610 PF00512 His Kinase A (phospho-acceptor) domain Clos_0610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0610 PF13493 Domain of unknown function (DUF4118) Clos_0611 PF00486 Transcriptional regulatory protein, C terminal Clos_0611 PF00072 Response regulator receiver domain Clos_0614 PF00535 Glycosyl transferase family 2 Clos_0616 PF00990 Diguanylate cyclase, GGDEF domain Clos_0616 PF07694 5TMR of 5TMR-LYT Clos_0617 PF02915 Rubrerythrin Clos_0618 PF01475 Ferric uptake regulator family Clos_0620 PF01588 Putative tRNA binding domain Clos_0621 PF00465 Iron-containing alcohol dehydrogenase Clos_0622 PF06826 Predicted Permease Membrane Region Clos_0622 PF02080 TrkA-C domain Clos_0623 PF08442 ATP-grasp domain Clos_0623 PF00549 CoA-ligase Clos_0624 PF02629 CoA binding domain Clos_0624 PF00549 CoA-ligase Clos_0625 PF00990 Diguanylate cyclase, GGDEF domain Clos_0625 PF03707 Bacterial signalling protein N terminal repeat Clos_0625 PF00563 EAL domain Clos_0626 PF00171 Aldehyde dehydrogenase family Clos_0628 PF12683 Protein of unknown function (DUF3798) Clos_0629 PF00005 ABC transporter Clos_0632 PF03960 ArsC family Clos_0635 PF02667 Short chain fatty acid transporter Clos_0636 PF02770 Acyl-CoA dehydrogenase, middle domain Clos_0636 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Clos_0636 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Clos_0637 PF01012 Electron transfer flavoprotein domain Clos_0638 PF00766 Electron transfer flavoprotein FAD-binding domain Clos_0638 PF01012 Electron transfer flavoprotein domain Clos_0639 PF00535 Glycosyl transferase family 2 Clos_0639 PF13181 Tetratricopeptide repeat Clos_0642 PF03167 Uracil DNA glycosylase superfamily Clos_0643 PF01545 Cation efflux family Clos_0643 PF16916 Dimerisation domain of Zinc Transporter Clos_0649 PF00155 Aminotransferase class I and II Clos_0649 PF00392 Bacterial regulatory proteins, gntR family Clos_0651 PF00294 pfkB family carbohydrate kinase Clos_0652 PF04227 Indigoidine synthase A like protein Clos_0653 PF00085 Thioredoxin Clos_0654 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clos_0655 PF02535 ZIP Zinc transporter Clos_0656 PF07556 Protein of unknown function (DUF1538) Clos_0658 PF08439 Oligopeptidase F Clos_0658 PF01432 Peptidase family M3 Clos_0660 PF00005 ABC transporter Clos_0661 PF18075 FtsX extracellular domain Clos_0661 PF02687 FtsX-like permease family Clos_0662 PF13419 Haloacid dehalogenase-like hydrolase Clos_0663 PF02073 Thermophilic metalloprotease (M29) Clos_0664 PF00291 Pyridoxal-phosphate dependent enzyme Clos_0665 PF07739 TipAS antibiotic-recognition domain Clos_0665 PF13411 MerR HTH family regulatory protein Clos_0667 PF00486 Transcriptional regulatory protein, C terminal Clos_0667 PF00072 Response regulator receiver domain Clos_0668 PF00672 HAMP domain Clos_0668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0668 PF00512 His Kinase A (phospho-acceptor) domain Clos_0670 PF03063 Prismane/CO dehydrogenase family Clos_0671 PF03471 Transporter associated domain Clos_0671 PF00571 CBS domain Clos_0671 PF01595 Cyclin M transmembrane N-terminal domain Clos_0672 PF12848 ABC transporter Clos_0672 PF00005 ABC transporter Clos_0673 PF02080 TrkA-C domain Clos_0673 PF02254 TrkA-N domain Clos_0674 PF02386 Cation transport protein Clos_0675 PF08534 Redoxin Clos_0676 PF16868 NMT1-like family Clos_0680 PF02557 D-alanyl-D-alanine carboxypeptidase Clos_0682 PF12833 Helix-turn-helix domain Clos_0682 PF12852 Cupin Clos_0684 PF00005 ABC transporter Clos_0684 PF00664 ABC transporter transmembrane region Clos_0685 PF00664 ABC transporter transmembrane region Clos_0685 PF00005 ABC transporter Clos_0686 PF08448 PAS fold Clos_0686 PF00990 Diguanylate cyclase, GGDEF domain Clos_0688 PF02638 Glycosyl hydrolase-like 10 Clos_0689 PF01170 Putative RNA methylase family UPF0020 Clos_0689 PF10672 S-adenosylmethionine-dependent methyltransferase Clos_0689 PF02926 THUMP domain Clos_0690 PF01479 S4 domain Clos_0690 PF00849 RNA pseudouridylate synthase Clos_0691 PF13538 UvrD-like helicase C-terminal domain Clos_0692 PF00465 Iron-containing alcohol dehydrogenase Clos_0694 PF04542 Sigma-70 region 2 Clos_0694 PF08281 Sigma-70, region 4 Clos_0697 PF14266 Putative component of 'biosynthetic module' Clos_0698 PF05816 Toxic anion resistance protein (TelA) Clos_0699 PF02342 TerD domain Clos_0701 PF02342 TerD domain Clos_0702 PF02342 TerD domain Clos_0705 PF00005 ABC transporter Clos_0708 PF00005 ABC transporter Clos_0711 PF03144 Elongation factor Tu domain 2 Clos_0711 PF00009 Elongation factor Tu GTP binding domain Clos_0711 PF16658 Class II release factor RF3, C-terminal domain Clos_0712 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Clos_0712 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Clos_0715 PF16199 Radical_SAM C-terminal domain Clos_0715 PF04055 Radical SAM superfamily Clos_0716 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Clos_0716 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Clos_0717 PF04607 Region found in RelA / SpoT proteins Clos_0719 PF01116 Fructose-bisphosphate aldolase class-II Clos_0720 PF01066 CDP-alcohol phosphatidyltransferase Clos_0721 PF01479 S4 domain Clos_0721 PF00849 RNA pseudouridylate synthase Clos_0722 PF00497 Bacterial extracellular solute-binding proteins, family 3 Clos_0723 PF00528 Binding-protein-dependent transport system inner membrane component Clos_0724 PF00005 ABC transporter Clos_0725 PF01938 TRAM domain Clos_0725 PF05958 tRNA (Uracil-5-)-methyltransferase Clos_0727 PF00486 Transcriptional regulatory protein, C terminal Clos_0727 PF00072 Response regulator receiver domain Clos_0728 PF00512 His Kinase A (phospho-acceptor) domain Clos_0728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0729 PF00005 ABC transporter Clos_0729 PF02687 FtsX-like permease family Clos_0729 PF12704 MacB-like periplasmic core domain Clos_0731 PF03781 Sulfatase-modifying factor enzyme 1 Clos_0734 PF01695 IstB-like ATP binding protein Clos_0736 PF13333 Integrase core domain Clos_0736 PF00665 Integrase core domain Clos_0744 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Clos_0744 PF03466 LysR substrate binding domain Clos_0745 PF02567 Phenazine biosynthesis-like protein Clos_0748 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0748 PF08447 PAS fold Clos_0748 PF00989 PAS fold Clos_0748 PF00512 His Kinase A (phospho-acceptor) domain Clos_0749 PF00072 Response regulator receiver domain Clos_0749 PF02954 Bacterial regulatory protein, Fis family Clos_0749 PF00158 Sigma-54 interaction domain Clos_0750 PF01235 Sodium:alanine symporter family Clos_0752 PF16925 Tetracyclin repressor-like, C-terminal domain Clos_0752 PF00440 Bacterial regulatory proteins, tetR family Clos_0753 PF05977 Transmembrane secretion effector Clos_0755 PF00005 ABC transporter Clos_0756 PF13411 MerR HTH family regulatory protein Clos_0756 PF07739 TipAS antibiotic-recognition domain Clos_0758 PF01872 RibD C-terminal domain Clos_0760 PF06100 MCRA family Clos_0763 PF00092 von Willebrand factor type A domain Clos_0764 PF00132 Bacterial transferase hexapeptide (six repeats) Clos_0766 PF01964 Radical SAM ThiC family Clos_0769 PF00155 Aminotransferase class I and II Clos_0769 PF00392 Bacterial regulatory proteins, gntR family Clos_0771 PF04439 Streptomycin adenylyltransferase Clos_0775 PF03851 UV-endonuclease UvdE Clos_0776 PF04070 Domain of unknown function (DUF378) Clos_0777 PF01381 Helix-turn-helix Clos_0780 PF13411 MerR HTH family regulatory protein Clos_0780 PF07739 TipAS antibiotic-recognition domain Clos_0782 PF08281 Sigma-70, region 4 Clos_0782 PF04542 Sigma-70 region 2 Clos_0785 PF01047 MarR family Clos_0787 PF00486 Transcriptional regulatory protein, C terminal Clos_0787 PF00072 Response regulator receiver domain Clos_0788 PF00512 His Kinase A (phospho-acceptor) domain Clos_0788 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0788 PF18719 ArlS sensor domain Clos_0789 PF08534 Redoxin Clos_0791 PF00936 BMC domain Clos_0792 PF10662 Ethanolamine utilisation - propanediol utilisation Clos_0793 PF01923 Cobalamin adenosyltransferase Clos_0794 PF00465 Iron-containing alcohol dehydrogenase Clos_0795 PF00936 BMC domain Clos_0796 PF06277 Ethanolamine utilisation protein EutA Clos_0797 PF06751 Ethanolamine ammonia lyase large subunit (EutB) Clos_0798 PF05985 Ethanolamine ammonia-lyase light chain (EutC) Clos_0799 PF00936 BMC domain Clos_0800 PF00936 BMC domain Clos_0801 PF00171 Aldehyde dehydrogenase family Clos_0801 PF00465 Iron-containing alcohol dehydrogenase Clos_0802 PF00936 BMC domain Clos_0804 PF06130 Phosphate propanoyltransferase Clos_0806 PF03319 Ethanolamine utilisation protein EutN/carboxysome Clos_0807 PF04346 Ethanolamine utilisation protein, EutH Clos_0808 PF06249 Ethanolamine utilisation protein EutQ Clos_0812 PF00158 Sigma-54 interaction domain Clos_0812 PF13426 PAS domain Clos_0812 PF02954 Bacterial regulatory protein, Fis family Clos_0813 PF02515 CoA-transferase family III Clos_0815 PF00682 HMGL-like Clos_0816 PF08279 HTH domain Clos_0816 PF13280 WYL domain Clos_0820 PF00664 ABC transporter transmembrane region Clos_0820 PF00005 ABC transporter Clos_0821 PF00664 ABC transporter transmembrane region Clos_0821 PF00005 ABC transporter Clos_0822 PF06445 GyrI-like small molecule binding domain Clos_0822 PF13411 MerR HTH family regulatory protein Clos_0823 PF00149 Calcineurin-like phosphoesterase Clos_0824 PF00375 Sodium:dicarboxylate symporter family Clos_0825 PF00291 Pyridoxal-phosphate dependent enzyme Clos_0826 PF11954 Domain of unknown function (DUF3471) Clos_0826 PF00144 Beta-lactamase Clos_0828 PF02417 Chromate transporter Clos_0830 PF03466 LysR substrate binding domain Clos_0830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Clos_0831 PF00210 Ferritin-like domain Clos_0833 PF12697 Alpha/beta hydrolase family Clos_0834 PF00990 Diguanylate cyclase, GGDEF domain Clos_0834 PF17158 Membrane-associated sensor, integral membrane domain Clos_0836 PF03062 MBOAT, membrane-bound O-acyltransferase family Clos_0838 PF00892 EamA-like transporter family Clos_0839 PF04294 VanW like protein Clos_0841 PF01276 Orn/Lys/Arg decarboxylase, major domain Clos_0841 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Clos_0846 PF00291 Pyridoxal-phosphate dependent enzyme Clos_0847 PF00107 Zinc-binding dehydrogenase Clos_0848 PF01047 MarR family Clos_0850 PF01757 Acyltransferase family Clos_0852 PF05726 Pirin C-terminal cupin domain Clos_0852 PF02678 Pirin Clos_0853 PF07883 Cupin domain Clos_0854 PF13556 PucR C-terminal helix-turn-helix domain Clos_0854 PF17853 GGDEF-like domain Clos_0858 PF02386 Cation transport protein Clos_0860 PF13493 Domain of unknown function (DUF4118) Clos_0860 PF00512 His Kinase A (phospho-acceptor) domain Clos_0860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0860 PF02702 Osmosensitive K+ channel His kinase sensor domain Clos_0861 PF00486 Transcriptional regulatory protein, C terminal Clos_0861 PF00072 Response regulator receiver domain Clos_0862 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Clos_0862 PF07685 CobB/CobQ-like glutamine amidotransferase domain Clos_0863 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Clos_0863 PF07685 CobB/CobQ-like glutamine amidotransferase domain Clos_0864 PF07969 Amidohydrolase family Clos_0865 PF13520 Amino acid permease Clos_0867 PF00860 Permease family Clos_0870 PF11392 Protein of unknown function (DUF2877) Clos_0871 PF00549 CoA-ligase Clos_0871 PF02629 CoA binding domain Clos_0872 PF02629 CoA binding domain Clos_0872 PF00549 CoA-ligase Clos_0873 PF06545 Protein of unknown function (DUF1116) Clos_0875 PF00795 Carbon-nitrogen hydrolase Clos_0876 PF02515 CoA-transferase family III Clos_0877 PF00941 FAD binding domain in molybdopterin dehydrogenase Clos_0877 PF03450 CO dehydrogenase flavoprotein C-terminal domain Clos_0878 PF01799 [2Fe-2S] binding domain Clos_0878 PF00111 2Fe-2S iron-sulfur cluster binding domain Clos_0879 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Clos_0879 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Clos_0880 PF00132 Bacterial transferase hexapeptide (six repeats) Clos_0880 PF12804 MobA-like NTP transferase domain Clos_0881 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_0881 PF02743 Cache domain Clos_0881 PF00672 HAMP domain Clos_0882 PF02659 Putative manganese efflux pump Clos_0883 PF01554 MatE Clos_0884 PF01293 Phosphoenolpyruvate carboxykinase Clos_0886 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clos_0886 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Clos_0886 PF00205 Thiamine pyrophosphate enzyme, central domain Clos_0890 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Clos_0890 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Clos_0895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Clos_0895 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clos_0896 PF01022 Bacterial regulatory protein, arsR family Clos_0897 PF02743 Cache domain Clos_0897 PF00672 HAMP domain Clos_0897 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_0898 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Clos_0899 PF05067 Manganese containing catalase Clos_0906 PF10502 Signal peptidase, peptidase S26 Clos_0907 PF08331 Domain of unknown function (DUF1730) Clos_0908 PF05362 Lon protease (S16) C-terminal proteolytic domain Clos_0908 PF13654 AAA domain Clos_0909 PF00155 Aminotransferase class I and II Clos_0910 PF10576 Iron-sulfur binding domain of endonuclease III Clos_0910 PF00633 Helix-hairpin-helix motif Clos_0910 PF00730 HhH-GPD superfamily base excision DNA repair protein Clos_0911 PF02491 SHS2 domain inserted in FTSA Clos_0912 PF04294 VanW like protein Clos_0915 PF01497 Periplasmic binding protein Clos_0916 PF01032 FecCD transport family Clos_0917 PF00005 ABC transporter Clos_0918 PF01475 Ferric uptake regulator family Clos_0920 PF00149 Calcineurin-like phosphoesterase Clos_0920 PF02872 5'-nucleotidase, C-terminal domain Clos_0921 PF00579 tRNA synthetases class I (W and Y) Clos_0921 PF01479 S4 domain Clos_0927 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Clos_0927 PF13378 Enolase C-terminal domain-like Clos_0929 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Clos_0929 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Clos_0929 PF00037 4Fe-4S binding domain Clos_0930 PF00037 4Fe-4S binding domain Clos_0930 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Clos_0930 PF02256 Iron hydrogenase small subunit Clos_0930 PF02906 Iron only hydrogenase large subunit, C-terminal domain Clos_0934 PF00005 ABC transporter Clos_0935 PF00924 Mechanosensitive ion channel Clos_0936 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Clos_0936 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Clos_0937 PF04073 Aminoacyl-tRNA editing domain Clos_0940 PF04542 Sigma-70 region 2 Clos_0940 PF08281 Sigma-70, region 4 Clos_0943 PF00486 Transcriptional regulatory protein, C terminal Clos_0943 PF00072 Response regulator receiver domain Clos_0944 PF18719 ArlS sensor domain Clos_0944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0944 PF00512 His Kinase A (phospho-acceptor) domain Clos_0946 PF02673 Bacitracin resistance protein BacA Clos_0949 PF01032 FecCD transport family Clos_0950 PF00005 ABC transporter Clos_0951 PF00588 SpoU rRNA Methylase family Clos_0952 PF02645 Uncharacterised protein, DegV family COG1307 Clos_0954 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clos_0955 PF00085 Thioredoxin Clos_0956 PF09338 Glycine/sarcosine/betaine reductase component B subunits Clos_0959 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Clos_0960 PF02504 Fatty acid synthesis protein Clos_0961 PF02608 ABC transporter substrate-binding protein PnrA-like Clos_0962 PF11230 Protein of unknown function (DUF3029) Clos_0963 PF04055 Radical SAM superfamily Clos_0967 PF04552 Sigma-54, DNA binding domain Clos_0967 PF04963 Sigma-54 factor, core binding domain Clos_0967 PF00309 Sigma-54 factor, Activator interacting domain (AID) Clos_0968 PF04198 Putative sugar-binding domain Clos_0969 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Clos_0969 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Clos_0970 PF00162 Phosphoglycerate kinase Clos_0971 PF00121 Triosephosphate isomerase Clos_0973 PF00113 Enolase, C-terminal TIM barrel domain Clos_0973 PF03952 Enolase, N-terminal domain Clos_0975 PF03030 Inorganic H+ pyrophosphatase Clos_0976 PF06961 Protein of unknown function (DUF1294) Clos_0977 PF00575 S1 RNA binding domain Clos_0977 PF00773 RNB domain Clos_0977 PF08206 Ribonuclease B OB domain Clos_0977 PF17876 Cold shock domain Clos_0978 PF01668 SmpB protein Clos_0979 PF00271 Helicase conserved C-terminal domain Clos_0979 PF00570 HRDC domain Clos_0979 PF00270 DEAD/DEAH box helicase Clos_0979 PF16124 RecQ zinc-binding Clos_0979 PF09382 RQC domain Clos_0980 PF00005 ABC transporter Clos_0981 PF02687 FtsX-like permease family Clos_0982 PF00486 Transcriptional regulatory protein, C terminal Clos_0982 PF00072 Response regulator receiver domain Clos_0983 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_0986 PF10431 C-terminal, D2-small domain, of ClpB protein Clos_0986 PF00004 ATPase family associated with various cellular activities (AAA) Clos_0986 PF07724 AAA domain (Cdc48 subfamily) Clos_0986 PF17871 AAA lid domain Clos_0989 PF00037 4Fe-4S binding domain Clos_0989 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Clos_0989 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Clos_0990 PF02906 Iron only hydrogenase large subunit, C-terminal domain Clos_0990 PF02256 Iron hydrogenase small subunit Clos_0990 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Clos_0990 PF00037 4Fe-4S binding domain Clos_0991 PF04055 Radical SAM superfamily Clos_0991 PF06968 Biotin and Thiamin Synthesis associated domain Clos_0993 PF01926 50S ribosome-binding GTPase Clos_0993 PF07650 KH domain Clos_0994 PF00849 RNA pseudouridylate synthase Clos_0994 PF01479 S4 domain Clos_0995 PF08241 Methyltransferase domain Clos_0996 PF16360 GTP-binding GTPase Middle Region Clos_0996 PF01926 50S ribosome-binding GTPase Clos_0996 PF13167 GTP-binding GTPase N-terminal Clos_0997 PF10990 Protein of unknown function (DUF2809) Clos_0999 PF00563 EAL domain Clos_0999 PF12792 CSS motif domain associated with EAL Clos_1001 PF01588 Putative tRNA binding domain Clos_1001 PF09334 tRNA synthetases class I (M) Clos_1001 PF08264 Anticodon-binding domain of tRNA Clos_1002 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Clos_1002 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Clos_1003 PF09334 tRNA synthetases class I (M) Clos_1005 PF03848 Tellurite resistance protein TehB Clos_1006 PF04951 D-aminopeptidase Clos_1009 PF00795 Carbon-nitrogen hydrolase Clos_1010 PF03459 TOBE domain Clos_1011 PF01891 Cobalt uptake substrate-specific transmembrane region Clos_1012 PF02553 Cobalt transport protein component CbiN Clos_1013 PF02361 Cobalt transport protein Clos_1014 PF00005 ABC transporter Clos_1015 PF02570 Precorrin-8X methylmutase Clos_1016 PF01888 CbiD Clos_1017 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clos_1018 PF05175 Methyltransferase small domain Clos_1019 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clos_1020 PF11760 Cobalamin synthesis G N-terminal Clos_1020 PF11761 Cobalamin biosynthesis central region Clos_1020 PF01890 Cobalamin synthesis G C-terminus Clos_1021 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clos_1022 PF02571 Precorrin-6x reductase CbiJ/CobK Clos_1023 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clos_1024 PF02417 Chromate transporter Clos_1026 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Clos_1026 PF03466 LysR substrate binding domain Clos_1027 PF04143 Sulphur transport Clos_1029 PF04143 Sulphur transport Clos_1030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Clos_1030 PF03466 LysR substrate binding domain Clos_1034 PF01751 Toprim domain Clos_1034 PF01131 DNA topoisomerase Clos_1035 PF01047 MarR family Clos_1037 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clos_1037 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Clos_1038 PF01171 PP-loop family Clos_1039 PF00176 SNF2 family N-terminal domain Clos_1039 PF00271 Helicase conserved C-terminal domain Clos_1039 PF12419 SNF2 Helicase protein Clos_1042 PF04024 PspC domain Clos_1045 PF01145 SPFH domain / Band 7 family Clos_1045 PF15975 Flotillin Clos_1046 PF14659 Phage integrase, N-terminal SAM-like domain Clos_1046 PF00589 Phage integrase family Clos_1048 PF01381 Helix-turn-helix Clos_1054 PF01695 IstB-like ATP binding protein Clos_1056 PF12729 Four helix bundle sensory module for signal transduction Clos_1056 PF00672 HAMP domain Clos_1056 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_1057 PF01790 Prolipoprotein diacylglyceryl transferase Clos_1066 PF00403 Heavy-metal-associated domain Clos_1073 PF00291 Pyridoxal-phosphate dependent enzyme Clos_1074 PF01053 Cys/Met metabolism PLP-dependent enzyme Clos_1076 PF13649 Methyltransferase domain Clos_1078 PF00989 PAS fold Clos_1078 PF00512 His Kinase A (phospho-acceptor) domain Clos_1078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_1079 PF02954 Bacterial regulatory protein, Fis family Clos_1079 PF00072 Response regulator receiver domain Clos_1079 PF00158 Sigma-54 interaction domain Clos_1080 PF01209 ubiE/COQ5 methyltransferase family Clos_1081 PF02535 ZIP Zinc transporter Clos_1083 PF01252 Signal peptidase (SPase) II Clos_1085 PF01022 Bacterial regulatory protein, arsR family Clos_1087 PF00403 Heavy-metal-associated domain Clos_1090 PF13411 MerR HTH family regulatory protein Clos_1092 PF00005 ABC transporter Clos_1093 PF04542 Sigma-70 region 2 Clos_1093 PF08281 Sigma-70, region 4 Clos_1094 PF13847 Methyltransferase domain Clos_1095 PF12804 MobA-like NTP transferase domain Clos_1096 PF01568 Molydopterin dinucleotide binding domain Clos_1096 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Clos_1096 PF00384 Molybdopterin oxidoreductase Clos_1097 PF13247 4Fe-4S dicluster domain Clos_1097 PF00037 4Fe-4S binding domain Clos_1099 PF12800 4Fe-4S binding domain Clos_1099 PF13247 4Fe-4S dicluster domain Clos_1101 PF02416 mttA/Hcf106 family Clos_1102 PF00994 Probable molybdopterin binding domain Clos_1102 PF02464 Competence-damaged protein Clos_1103 PF00994 Probable molybdopterin binding domain Clos_1103 PF03453 MoeA N-terminal region (domain I and II) Clos_1103 PF03454 MoeA C-terminal region (domain IV) Clos_1107 PF01022 Bacterial regulatory protein, arsR family Clos_1109 PF06953 Arsenical resistance operon trans-acting repressor ArsD Clos_1110 PF02374 Anion-transporting ATPase Clos_1112 PF01022 Bacterial regulatory protein, arsR family Clos_1113 PF01451 Low molecular weight phosphotyrosine protein phosphatase Clos_1114 PF01758 Sodium Bile acid symporter family Clos_1116 PF12849 PBP superfamily domain Clos_1117 PF00528 Binding-protein-dependent transport system inner membrane component Clos_1118 PF00528 Binding-protein-dependent transport system inner membrane component Clos_1119 PF00005 ABC transporter Clos_1120 PF01895 PhoU domain Clos_1123 PF03773 Predicted permease Clos_1132 PF03480 Bacterial extracellular solute-binding protein, family 7 Clos_1134 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Clos_1135 PF13344 Haloacid dehalogenase-like hydrolase Clos_1136 PF04309 Glycerol-3-phosphate responsive antiterminator Clos_1137 PF04324 BFD-like [2Fe-2S] binding domain Clos_1137 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clos_1138 PF04324 BFD-like [2Fe-2S] binding domain Clos_1138 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clos_1140 PF02308 MgtC family Clos_1144 PF13597 Anaerobic ribonucleoside-triphosphate reductase Clos_1144 PF03477 ATP cone domain Clos_1145 PF04055 Radical SAM superfamily Clos_1148 PF00999 Sodium/hydrogen exchanger family Clos_1152 PF13567 Domain of unknown function (DUF4131) Clos_1152 PF00753 Metallo-beta-lactamase superfamily Clos_1152 PF03772 Competence protein Clos_1154 PF00300 Histidine phosphatase superfamily (branch 1) Clos_1155 PF00881 Nitroreductase family Clos_1158 PF02245 Methylpurine-DNA glycosylase (MPG) Clos_1159 PF01070 FMN-dependent dehydrogenase Clos_1160 PF01522 Polysaccharide deacetylase Clos_1161 PF07486 Cell Wall Hydrolase Clos_1162 PF02774 Semialdehyde dehydrogenase, dimerisation domain Clos_1162 PF01118 Semialdehyde dehydrogenase, NAD binding domain Clos_1163 PF00701 Dihydrodipicolinate synthetase family Clos_1164 PF01113 Dihydrodipicolinate reductase, N-terminus Clos_1164 PF05173 Dihydrodipicolinate reductase, C-terminus Clos_1165 PF00375 Sodium:dicarboxylate symporter family Clos_1166 PF08439 Oligopeptidase F Clos_1166 PF01432 Peptidase family M3 Clos_1170 PF01513 ATP-NAD kinase Clos_1171 PF00849 RNA pseudouridylate synthase Clos_1173 PF00004 ATPase family associated with various cellular activities (AAA) Clos_1173 PF17862 AAA+ lid domain Clos_1173 PF01434 Peptidase family M41 Clos_1174 PF03453 MoeA N-terminal region (domain I and II) Clos_1174 PF03454 MoeA C-terminal region (domain IV) Clos_1174 PF00994 Probable molybdopterin binding domain Clos_1175 PF03454 MoeA C-terminal region (domain IV) Clos_1175 PF00994 Probable molybdopterin binding domain Clos_1175 PF03453 MoeA N-terminal region (domain I and II) Clos_1177 PF01943 Polysaccharide biosynthesis protein Clos_1177 PF14667 Polysaccharide biosynthesis C-terminal domain Clos_1180 PF00005 ABC transporter Clos_1180 PF00664 ABC transporter transmembrane region Clos_1181 PF00005 ABC transporter Clos_1181 PF00664 ABC transporter transmembrane region Clos_1183 PF00155 Aminotransferase class I and II Clos_1184 PF00781 Diacylglycerol kinase catalytic domain Clos_1185 PF01047 MarR family Clos_1186 PF00990 Diguanylate cyclase, GGDEF domain Clos_1187 PF00221 Aromatic amino acid lyase Clos_1188 PF01979 Amidohydrolase family Clos_1191 PF05979 Bacterial protein of unknown function (DUF896) Clos_1192 PF01584 CheW-like domain Clos_1194 PF05384 Sensor protein DegS Clos_1194 PF07730 Histidine kinase Clos_1194 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_1195 PF00196 Bacterial regulatory proteins, luxR family Clos_1195 PF00072 Response regulator receiver domain Clos_1196 PF02645 Uncharacterised protein, DegV family COG1307 Clos_1197 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Clos_1197 PF03466 LysR substrate binding domain Clos_1198 PF04607 Region found in RelA / SpoT proteins Clos_1199 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Clos_1200 PF00005 ABC transporter Clos_1201 PF02687 FtsX-like permease family Clos_1201 PF12704 MacB-like periplasmic core domain Clos_1201 PF00005 ABC transporter Clos_1202 PF00072 Response regulator receiver domain Clos_1202 PF00486 Transcriptional regulatory protein, C terminal Clos_1203 PF18698 Histidine kinase sensor domain Clos_1203 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_1203 PF00672 HAMP domain Clos_1203 PF00989 PAS fold Clos_1203 PF00512 His Kinase A (phospho-acceptor) domain Clos_1204 PF04542 Sigma-70 region 2 Clos_1204 PF08281 Sigma-70, region 4 Clos_1206 PF00476 DNA polymerase family A Clos_1206 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Clos_1206 PF01367 5'-3' exonuclease, C-terminal SAM fold Clos_1207 PF01121 Dephospho-CoA kinase Clos_1208 PF01464 Transglycosylase SLT domain Clos_1208 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Clos_1209 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Clos_1211 PF01327 Polypeptide deformylase Clos_1212 PF07969 Amidohydrolase family Clos_1217 PF02223 Thymidylate kinase Clos_1218 PF00270 DEAD/DEAH box helicase Clos_1218 PF00271 Helicase conserved C-terminal domain Clos_1221 PF03772 Competence protein Clos_1221 PF13567 Domain of unknown function (DUF4131) Clos_1221 PF00753 Metallo-beta-lactamase superfamily Clos_1223 PF00753 Metallo-beta-lactamase superfamily Clos_1223 PF13567 Domain of unknown function (DUF4131) Clos_1223 PF03772 Competence protein Clos_1225 PF01649 Ribosomal protein S20 Clos_1226 PF03418 Germination protease Clos_1229 PF06421 GTP-binding protein LepA C-terminus Clos_1229 PF00679 Elongation factor G C-terminus Clos_1229 PF00009 Elongation factor Tu GTP binding domain Clos_1229 PF03144 Elongation factor Tu domain 2 Clos_1230 PF06969 HemN C-terminal domain Clos_1230 PF04055 Radical SAM superfamily Clos_1231 PF01628 HrcA protein C terminal domain Clos_1232 PF01025 GrpE Clos_1233 PF00012 Hsp70 protein Clos_1236 PF04452 RNA methyltransferase Clos_1237 PF04055 Radical SAM superfamily Clos_1237 PF01938 TRAM domain Clos_1237 PF00919 Uncharacterized protein family UPF0004 Clos_1238 PF01230 HIT domain Clos_1239 PF01165 Ribosomal protein S21 Clos_1240 PF09424 Yqey-like protein Clos_1242 PF12127 SigmaW regulon antibacterial Clos_1244 PF07873 YabP family Clos_1246 PF02562 PhoH-like protein Clos_1247 PF01966 HD domain Clos_1247 PF07698 7TM receptor with intracellular HD hydrolase Clos_1247 PF07697 7TM-HD extracellular Clos_1248 PF02130 Uncharacterized protein family UPF0054 Clos_1249 PF01219 Prokaryotic diacylglycerol kinase Clos_1251 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Clos_1252 PF07650 KH domain Clos_1252 PF01926 50S ribosome-binding GTPase Clos_1253 PF11967 Recombination protein O N terminal Clos_1253 PF02565 Recombination protein O C terminal Clos_1254 PF00889 Elongation factor TS Clos_1255 PF03129 Anticodon binding domain Clos_1255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clos_1256 PF08279 HTH domain Clos_1256 PF00571 CBS domain Clos_1257 PF03618 Kinase/pyrophosphorylase Clos_1258 PF00391 PEP-utilising enzyme, mobile domain Clos_1258 PF02896 PEP-utilising enzyme, TIM barrel domain Clos_1258 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Clos_1263 PF13302 Acetyltransferase (GNAT) domain Clos_1267 PF00005 ABC transporter Clos_1270 PF03551 Transcriptional regulator PadR-like family Clos_1273 PF11188 Protein of unknown function (DUF2975) Clos_1274 PF13443 Cro/C1-type HTH DNA-binding domain Clos_1275 PF01494 FAD binding domain Clos_1277 PF01966 HD domain Clos_1277 PF13286 Phosphohydrolase-associated domain Clos_1278 PF01807 CHC2 zinc finger Clos_1278 PF10410 DnaB-helicase binding domain of primase Clos_1278 PF08275 DNA primase catalytic core, N-terminal domain Clos_1279 PF04545 Sigma-70, region 4 Clos_1279 PF04539 Sigma-70 region 3 Clos_1279 PF04542 Sigma-70 region 2 Clos_1279 PF00140 Sigma-70 factor, region 1.2 Clos_1279 PF03979 Sigma-70 factor, region 1.1 Clos_1281 PF04816 tRNA (adenine(22)-N(1))-methyltransferase Clos_1282 PF01784 NIF3 (NGG1p interacting factor 3) Clos_1284 PF14659 Phage integrase, N-terminal SAM-like domain Clos_1284 PF00589 Phage integrase family Clos_1286 PF07883 Cupin domain Clos_1286 PF01381 Helix-turn-helix Clos_1290 PF00271 Helicase conserved C-terminal domain Clos_1290 PF00176 SNF2 family N-terminal domain Clos_1290 PF04434 SWIM zinc finger Clos_1294 PF13662 Toprim domain Clos_1294 PF08275 DNA primase catalytic core, N-terminal domain Clos_1294 PF01807 CHC2 zinc finger Clos_1294 PF10410 DnaB-helicase binding domain of primase Clos_1294 PF08278 DNA primase DnaG DnaB-binding Clos_1312 PF05139 Erythromycin esterase Clos_1317 PF18273 Type III R-M EcoP15I C-terminal domain Clos_1317 PF01555 DNA methylase Clos_1318 PF08774 VRR-NUC domain Clos_1318 PF04851 Type III restriction enzyme, res subunit Clos_1320 PF04002 RadC-like JAB domain Clos_1322 PF00899 ThiF family Clos_1323 PF00005 ABC transporter Clos_1323 PF17755 UvrA DNA-binding domain Clos_1323 PF17760 UvrA interaction domain Clos_1324 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Clos_1324 PF01488 Shikimate / quinate 5-dehydrogenase Clos_1327 PF03900 Porphobilinogen deaminase, C-terminal domain Clos_1327 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Clos_1329 PF00490 Delta-aminolevulinic acid dehydratase Clos_1330 PF00202 Aminotransferase class-III Clos_1332 PF01741 Large-conductance mechanosensitive channel, MscL Clos_1334 PF02554 Carbon starvation protein CstA Clos_1335 PF00072 Response regulator receiver domain Clos_1335 PF04397 LytTr DNA-binding domain Clos_1336 PF06580 Histidine kinase Clos_1336 PF07694 5TMR of 5TMR-LYT Clos_1340 PF00293 NUDIX domain Clos_1341 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Clos_1342 PF00528 Binding-protein-dependent transport system inner membrane component Clos_1343 PF12911 N-terminal TM domain of oligopeptide transport permease C Clos_1343 PF00528 Binding-protein-dependent transport system inner membrane component Clos_1344 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Clos_1344 PF00005 ABC transporter Clos_1345 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Clos_1345 PF00005 ABC transporter Clos_1346 PF01575 MaoC like domain Clos_1347 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Clos_1350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Clos_1350 PF00005 ABC transporter Clos_1351 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Clos_1351 PF00005 ABC transporter Clos_1352 PF01923 Cobalamin adenosyltransferase Clos_1357 PF01264 Chorismate synthase Clos_1358 PF01761 3-dehydroquinate synthase Clos_1359 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Clos_1360 PF06130 Phosphate propanoyltransferase Clos_1361 PF01791 DeoC/LacD family aldolase Clos_1364 PF01926 50S ribosome-binding GTPase Clos_1364 PF06071 Protein of unknown function (DUF933) Clos_1367 PF05193 Peptidase M16 inactive domain Clos_1367 PF00675 Insulinase (Peptidase family M16) Clos_1370 PF02381 MraZ protein, putative antitoxin-like Clos_1371 PF01795 MraW methylase family Clos_1373 PF00905 Penicillin binding protein transpeptidase domain Clos_1373 PF03793 PASTA domain Clos_1373 PF03717 Penicillin-binding Protein dimerisation domain Clos_1374 PF08245 Mur ligase middle domain Clos_1374 PF01225 Mur ligase family, catalytic domain Clos_1374 PF02875 Mur ligase family, glutamate ligase domain Clos_1375 PF01225 Mur ligase family, catalytic domain Clos_1375 PF02875 Mur ligase family, glutamate ligase domain Clos_1375 PF08245 Mur ligase middle domain Clos_1376 PF00953 Glycosyl transferase family 4 Clos_1377 PF08245 Mur ligase middle domain Clos_1377 PF02875 Mur ligase family, glutamate ligase domain Clos_1378 PF01098 Cell cycle protein Clos_1379 PF04101 Glycosyltransferase family 28 C-terminal domain Clos_1379 PF03033 Glycosyltransferase family 28 N-terminal domain Clos_1380 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Clos_1384 PF06947 Protein of unknown function (DUF1290) Clos_1385 PF00091 Tubulin/FtsZ family, GTPase domain Clos_1385 PF12327 FtsZ family, C-terminal domain Clos_1386 PF03419 Sporulation factor SpoIIGA Clos_1387 PF04545 Sigma-70, region 4 Clos_1387 PF04542 Sigma-70 region 2 Clos_1388 PF04545 Sigma-70, region 4 Clos_1388 PF04542 Sigma-70 region 2 Clos_1388 PF04539 Sigma-70 region 3 Clos_1389 PF05239 PRC-barrel domain Clos_1390 PF03477 ATP cone domain Clos_1392 PF00486 Transcriptional regulatory protein, C terminal Clos_1392 PF00072 Response regulator receiver domain Clos_1393 PF13426 PAS domain Clos_1393 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_1393 PF00512 His Kinase A (phospho-acceptor) domain Clos_1393 PF00672 HAMP domain Clos_1399 PF01926 50S ribosome-binding GTPase Clos_1399 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Clos_1400 PF02660 Glycerol-3-phosphate acyltransferase Clos_1401 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Clos_1401 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Clos_1404 PF13687 Domain of unknown function (DUF4153) Clos_1407 PF01168 Alanine racemase, N-terminal domain Clos_1408 PF04472 Cell division protein SepF Clos_1410 PF01479 S4 domain Clos_1410 PF17774 Putative RNA-binding domain in YlmH Clos_1411 PF05103 DivIVA protein Clos_1412 PF01048 Phosphorylase superfamily Clos_1413 PF00793 DAHP synthetase I family Clos_1413 PF18152 DAHP synthase ferredoxin-like domain Clos_1415 PF01258 Prokaryotic dksA/traR C4-type zinc finger Clos_1417 PF01479 S4 domain Clos_1417 PF00849 RNA pseudouridylate synthase Clos_1418 PF00156 Phosphoribosyl transferase domain Clos_1420 PF01678 Diaminopimelate epimerase Clos_1421 PF08340 Domain of unknown function (DUF1732) Clos_1421 PF03755 YicC-like family, N-terminal region Clos_1422 PF04025 Domain of unknown function (DUF370) Clos_1424 PF01192 RNA polymerase Rpb6 Clos_1425 PF04127 DNA / pantothenate metabolism flavoprotein Clos_1425 PF02441 Flavoprotein Clos_1426 PF17764 3′ DNA-binding domain (3′BD) Clos_1426 PF18074 Primosomal protein N C-terminal domain Clos_1426 PF04851 Type III restriction enzyme, res subunit Clos_1426 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Clos_1426 PF00271 Helicase conserved C-terminal domain Clos_1427 PF01327 Polypeptide deformylase Clos_1428 PF02911 Formyl transferase, C-terminal domain Clos_1428 PF00551 Formyl transferase Clos_1430 PF04298 Putative neutral zinc metallopeptidase Clos_1431 PF01189 16S rRNA methyltransferase RsmB/F Clos_1431 PF01029 NusB family Clos_1432 PF04055 Radical SAM superfamily Clos_1434 PF03793 PASTA domain Clos_1434 PF00069 Protein kinase domain Clos_1435 PF03193 RsgA GTPase Clos_1435 PF16745 RsgA N-terminal domain Clos_1436 PF00834 Ribulose-phosphate 3 epimerase family Clos_1437 PF04263 Thiamin pyrophosphokinase, catalytic domain Clos_1437 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain Clos_1438 PF00830 Ribosomal L28 family Clos_1439 PF03780 Asp23 family, cell envelope-related function Clos_1440 PF13684 Dihydroxyacetone kinase family Clos_1440 PF02734 DAK2 domain Clos_1441 PF17191 RecG wedge domain Clos_1441 PF00270 DEAD/DEAH box helicase Clos_1441 PF00271 Helicase conserved C-terminal domain Clos_1443 PF01467 Cytidylyltransferase-like Clos_1445 PF07670 Nucleoside recognition Clos_1446 PF05636 HIGH Nucleotidyl Transferase Clos_1447 PF00871 Acetokinase family Clos_1448 PF02620 Large ribosomal RNA subunit accumulation protein YceD Clos_1449 PF01783 Ribosomal L32p protein family Clos_1451 PF02504 Fatty acid synthesis protein Clos_1452 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Clos_1452 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Clos_1453 PF03060 Nitronate monooxygenase Clos_1454 PF00698 Acyl transferase domain Clos_1456 PF00550 Phosphopantetheine attachment site Clos_1457 PF00109 Beta-ketoacyl synthase, N-terminal domain Clos_1457 PF02801 Beta-ketoacyl synthase, C-terminal domain Clos_1458 PF14622 Ribonuclease-III-like Clos_1458 PF00035 Double-stranded RNA binding motif Clos_1459 PF04055 Radical SAM superfamily Clos_1459 PF01938 TRAM domain Clos_1459 PF00919 Uncharacterized protein family UPF0004 Clos_1460 PF06470 SMC proteins Flexible Hinge Domain Clos_1460 PF02463 RecF/RecN/SMC N terminal domain Clos_1461 PF00448 SRP54-type protein, GTPase domain Clos_1461 PF02881 SRP54-type protein, helical bundle domain Clos_1462 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Clos_1463 PF02978 Signal peptide binding domain Clos_1463 PF00448 SRP54-type protein, GTPase domain Clos_1463 PF02881 SRP54-type protein, helical bundle domain Clos_1464 PF00886 Ribosomal protein S16 Clos_1466 PF05239 PRC-barrel domain Clos_1466 PF01782 RimM N-terminal domain Clos_1467 PF01746 tRNA (Guanine-1)-methyltransferase Clos_1468 PF01245 Ribosomal protein L19 Clos_1469 PF01926 50S ribosome-binding GTPase Clos_1470 PF01351 Ribonuclease HII Clos_1471 PF02021 Uncharacterised protein family UPF0102 Clos_1472 PF01078 Magnesium chelatase, subunit ChlI Clos_1472 PF13335 Magnesium chelatase, subunit ChlI C-terminal Clos_1473 PF18255 DNA processing protein A sterile alpha motif domain Clos_1473 PF02481 DNA recombination-mediator protein A Clos_1474 PF01751 Toprim domain Clos_1474 PF01396 Topoisomerase DNA binding C4 zinc finger Clos_1474 PF01131 DNA topoisomerase Clos_1475 PF06018 CodY GAF-like domain Clos_1475 PF08222 CodY helix-turn-helix domain Clos_1476 PF00460 Flagella basal body rod protein Clos_1477 PF00460 Flagella basal body rod protein Clos_1477 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clos_1478 PF02049 Flagellar hook-basal body complex protein FliE Clos_1479 PF01514 Secretory protein of YscJ/FliF family Clos_1479 PF08345 Flagellar M-ring protein C-terminal Clos_1480 PF14841 FliG middle domain Clos_1480 PF01706 FliG C-terminal domain Clos_1480 PF14842 FliG N-terminal domain Clos_1482 PF02874 ATP synthase alpha/beta family, beta-barrel domain Clos_1482 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clos_1482 PF18269 T3SS EscN ATPase C-terminal domain Clos_1486 PF03963 Flagellar hook capping protein - N-terminal region Clos_1488 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clos_1488 PF00460 Flagella basal body rod protein Clos_1488 PF07559 Flagellar basal body protein FlaE Clos_1490 PF01618 MotA/TolQ/ExbB proton channel family Clos_1491 PF00691 OmpA family Clos_1491 PF13677 Membrane MotB of proton-channel complex MotA/MotB Clos_1494 PF04509 CheC-like family Clos_1494 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Clos_1495 PF00072 Response regulator receiver domain Clos_1497 PF00813 FliP family Clos_1498 PF01313 Bacterial export proteins, family 3 Clos_1499 PF01311 Bacterial export proteins, family 1 Clos_1500 PF01312 FlhB HrpN YscU SpaS Family Clos_1501 PF00771 FHIPEP family Clos_1502 PF00448 SRP54-type protein, GTPase domain Clos_1503 PF10609 NUBPL iron-transfer P-loop NTPase Clos_1504 PF07317 Flagellar regulator YcgR Clos_1504 PF07238 PilZ domain Clos_1505 PF00072 Response regulator receiver domain Clos_1505 PF01339 CheB methylesterase Clos_1506 PF02895 Signal transducing histidine kinase, homodimeric domain Clos_1506 PF07194 P2 response regulator binding domain Clos_1506 PF01627 Hpt domain Clos_1506 PF01584 CheW-like domain Clos_1506 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_1507 PF01584 CheW-like domain Clos_1508 PF04509 CheC-like family Clos_1509 PF03975 CheD chemotactic sensory transduction Clos_1510 PF04545 Sigma-70, region 4 Clos_1510 PF04539 Sigma-70 region 3 Clos_1510 PF04542 Sigma-70 region 2 Clos_1513 PF00318 Ribosomal protein S2 Clos_1514 PF00889 Elongation factor TS Clos_1515 PF00696 Amino acid kinase family Clos_1516 PF01765 Ribosome recycling factor Clos_1517 PF01255 Putative undecaprenyl diphosphate synthase Clos_1519 PF13288 DXP reductoisomerase C-terminal domain Clos_1519 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Clos_1519 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Clos_1520 PF17820 PDZ domain Clos_1520 PF02163 Peptidase family M50 Clos_1521 PF04551 GcpE protein Clos_1522 PF00535 Glycosyl transferase family 2 Clos_1523 PF07733 Bacterial DNA polymerase III alpha NTPase domain Clos_1523 PF02811 PHP domain Clos_1523 PF14579 Helix-hairpin-helix motif Clos_1523 PF00929 Exonuclease Clos_1523 PF11490 DNA polymerase III polC-type N-terminus II Clos_1523 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Clos_1523 PF01336 OB-fold nucleic acid binding domain Clos_1524 PF17384 RimP C-terminal SH3 domain Clos_1524 PF02576 RimP N-terminal domain Clos_1525 PF13184 NusA-like KH domain Clos_1525 PF08529 NusA N-terminal domain Clos_1525 PF00575 S1 RNA binding domain Clos_1526 PF04296 Protein of unknown function (DUF448) Clos_1527 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Clos_1528 PF11987 Translation-initiation factor 2 Clos_1528 PF04760 Translation initiation factor IF-2, N-terminal region Clos_1528 PF00009 Elongation factor Tu GTP binding domain Clos_1529 PF02033 Ribosome-binding factor A Clos_1530 PF02272 DHHA1 domain Clos_1530 PF01368 DHH family Clos_1531 PF01509 TruB family pseudouridylate synthase (N terminal domain) Clos_1531 PF16198 tRNA pseudouridylate synthase B C-terminal domain Clos_1532 PF01687 Riboflavin kinase Clos_1532 PF06574 FAD synthetase Clos_1533 PF00312 Ribosomal protein S15 Clos_1534 PF03725 3' exoribonuclease family, domain 2 Clos_1534 PF00013 KH domain Clos_1534 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Clos_1534 PF00575 S1 RNA binding domain Clos_1534 PF01138 3' exoribonuclease family, domain 1 Clos_1535 PF01522 Polysaccharide deacetylase Clos_1536 PF05193 Peptidase M16 inactive domain Clos_1536 PF00675 Insulinase (Peptidase family M16) Clos_1538 PF00574 Clp protease Clos_1539 PF09397 Ftsk gamma domain Clos_1539 PF17854 FtsK alpha domain Clos_1539 PF01580 FtsK/SpoIIIE family Clos_1540 PF00581 Rhodanese-like domain Clos_1541 PF01066 CDP-alcohol phosphatidyltransferase Clos_1542 PF00154 recA bacterial DNA recombination protein Clos_1543 PF00013 KH domain Clos_1543 PF12072 Domain of unknown function (DUF3552) Clos_1543 PF01966 HD domain Clos_1544 PF04232 Stage V sporulation protein S (SpoVS) Clos_1545 PF02811 PHP domain Clos_1546 PF00155 Aminotransferase class I and II Clos_1547 PF00704 Glycosyl hydrolases family 18 Clos_1548 PF00589 Phage integrase family Clos_1548 PF02899 Phage integrase, N-terminal SAM-like domain Clos_1549 PF00717 Peptidase S24-like Clos_1549 PF01726 LexA DNA binding domain Clos_1550 PF06838 Methionine gamma-lyase Clos_1551 PF17209 Hfq protein Clos_1553 PF01119 DNA mismatch repair protein, C-terminal domain Clos_1553 PF08676 MutL C terminal dimerisation domain Clos_1554 PF05190 MutS family domain IV Clos_1554 PF00488 MutS domain V Clos_1554 PF01624 MutS domain I Clos_1554 PF05192 MutS domain III Clos_1554 PF05188 MutS domain II Clos_1555 PF01938 TRAM domain Clos_1555 PF00919 Uncharacterized protein family UPF0004 Clos_1555 PF04055 Radical SAM superfamily Clos_1558 PF05343 M42 glutamyl aminopeptidase Clos_1559 PF05343 M42 glutamyl aminopeptidase Clos_1560 PF03705 CheR methyltransferase, all-alpha domain Clos_1560 PF01739 CheR methyltransferase, SAM binding domain Clos_1561 PF02401 LytB protein Clos_1561 PF00575 S1 RNA binding domain Clos_1562 PF02401 LytB protein Clos_1563 PF01553 Acyltransferase Clos_1564 PF02224 Cytidylate kinase Clos_1565 PF07736 Chorismate mutase type I Clos_1567 PF00300 Histidine phosphatase superfamily (branch 1) Clos_1568 PF01380 SIS domain Clos_1568 PF01418 Helix-turn-helix domain, rpiR family Clos_1570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clos_1571 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Clos_1571 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Clos_1571 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Clos_1574 PF00682 HMGL-like Clos_1574 PF02436 Conserved carboxylase domain Clos_1574 PF00364 Biotin-requiring enzyme Clos_1575 PF06962 Putative rRNA methylase Clos_1577 PF01479 S4 domain Clos_1577 PF00849 RNA pseudouridylate synthase Clos_1578 PF13932 GidA associated domain Clos_1578 PF01134 Glucose inhibited division protein A Clos_1580 PF00768 D-alanyl-D-alanine carboxypeptidase Clos_1580 PF07943 Penicillin-binding protein 5, C-terminal domain Clos_1582 PF09579 Sporulation protein YtfJ (Spore_YtfJ) Clos_1585 PF00491 Arginase family Clos_1586 PF04079 Segregation and condensation complex subunit ScpB Clos_1587 PF02616 Segregation and condensation protein ScpA Clos_1588 PF07943 Penicillin-binding protein 5, C-terminal domain Clos_1588 PF00768 D-alanyl-D-alanine carboxypeptidase Clos_1589 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Clos_1589 PF00591 Glycosyl transferase family, a/b domain Clos_1589 PF02885 Glycosyl transferase family, helical bundle domain Clos_1590 PF01048 Phosphorylase superfamily Clos_1591 PF01048 Phosphorylase superfamily Clos_1592 PF01676 Metalloenzyme superfamily Clos_1593 PF02899 Phage integrase, N-terminal SAM-like domain Clos_1593 PF00589 Phage integrase family Clos_1595 PF00293 NUDIX domain Clos_1598 PF00535 Glycosyl transferase family 2 Clos_1601 PF02631 RecX family Clos_1602 PF00072 Response regulator receiver domain Clos_1602 PF08769 Sporulation initiation factor Spo0A C terminal Clos_1603 PF05580 SpoIVB peptidase S55 Clos_1603 PF17820 PDZ domain Clos_1604 PF13476 AAA domain Clos_1605 PF02863 Arginine repressor, C-terminal domain Clos_1605 PF01316 Arginine repressor, DNA binding domain Clos_1606 PF01728 FtsJ-like methyltransferase Clos_1606 PF01479 S4 domain Clos_1607 PF02780 Transketolase, C-terminal domain Clos_1607 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Clos_1607 PF02779 Transketolase, pyrimidine binding domain Clos_1608 PF02681 Divergent PAP2 family Clos_1609 PF00348 Polyprenyl synthetase Clos_1610 PF02609 Exonuclease VII small subunit Clos_1611 PF13742 OB-fold nucleic acid binding domain Clos_1611 PF02601 Exonuclease VII, large subunit Clos_1612 PF00814 Glycoprotease family Clos_1613 PF01029 NusB family Clos_1614 PF03780 Asp23 family, cell envelope-related function Clos_1618 PF09546 Stage III sporulation protein AE (spore_III_AE) Clos_1619 PF06686 Stage III sporulation protein AC/AD protein family Clos_1620 PF06686 Stage III sporulation protein AC/AD protein family Clos_1624 PF01132 Elongation factor P (EF-P) OB domain Clos_1624 PF09285 Elongation factor P, C-terminal Clos_1624 PF08207 Elongation factor P (EF-P) KOW-like domain Clos_1625 PF01202 Shikimate kinase Clos_1629 PF07963 Prokaryotic N-terminal methylation motif Clos_1629 PF00114 Pilin (bacterial filament) Clos_1634 PF06750 Bacterial Peptidase A24 N-terminal domain Clos_1634 PF01478 Type IV leader peptidase family Clos_1636 PF00482 Type II secretion system (T2SS), protein F Clos_1637 PF00437 Type II/IV secretion system protein Clos_1638 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Clos_1638 PF00437 Type II/IV secretion system protein Clos_1641 PF04542 Sigma-70 region 2 Clos_1641 PF04545 Sigma-70, region 4 Clos_1653 PF04542 Sigma-70 region 2 Clos_1653 PF04545 Sigma-70, region 4 Clos_1654 PF00905 Penicillin binding protein transpeptidase domain Clos_1654 PF03793 PASTA domain Clos_1654 PF03717 Penicillin-binding Protein dimerisation domain Clos_1655 PF00485 Phosphoribulokinase / Uridine kinase family Clos_1660 PF17770 Ribonuclease J C-terminal domain Clos_1660 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Clos_1660 PF00753 Metallo-beta-lactamase superfamily Clos_1661 PF01475 Ferric uptake regulator family Clos_1662 PF06949 Protein of unknown function (DUF1292) Clos_1665 PF06135 IreB regulatory phosphoprotein Clos_1666 PF01411 tRNA synthetases class II (A) Clos_1666 PF02272 DHHA1 domain Clos_1666 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Clos_1667 PF01594 AI-2E family transporter Clos_1669 PF04324 BFD-like [2Fe-2S] binding domain Clos_1669 PF01106 NifU-like domain Clos_1669 PF01592 NifU-like N terminal domain Clos_1670 PF00266 Aminotransferase class-V Clos_1671 PF02082 Transcriptional regulator Clos_1672 PF00188 Cysteine-rich secretory protein family Clos_1676 PF00183 Hsp90 protein Clos_1678 PF00817 impB/mucB/samB family Clos_1678 PF11799 impB/mucB/samB family C-terminal domain Clos_1678 PF11798 IMS family HHH motif Clos_1681 PF03193 RsgA GTPase Clos_1682 PF01416 tRNA pseudouridine synthase Clos_1683 PF12706 Beta-lactamase superfamily domain Clos_1683 PF00753 Metallo-beta-lactamase superfamily Clos_1688 PF12002 MgsA AAA+ ATPase C terminal Clos_1688 PF16193 AAA C-terminal domain Clos_1688 PF05496 Holliday junction DNA helicase RuvB P-loop domain Clos_1693 PF01168 Alanine racemase, N-terminal domain Clos_1694 PF13941 MutL protein Clos_1695 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit Clos_1695 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase Clos_1695 PF02310 B12 binding domain Clos_1696 PF16552 D-ornithine 4,5-aminomutase alpha-subunit Clos_1697 PF00291 Pyridoxal-phosphate dependent enzyme Clos_1700 PF00464 Serine hydroxymethyltransferase Clos_1704 PF02127 Aminopeptidase I zinc metalloprotease (M18) Clos_1707 PF00899 ThiF family Clos_1710 PF03129 Anticodon binding domain Clos_1710 PF13393 Histidyl-tRNA synthetase Clos_1711 PF04055 Radical SAM superfamily Clos_1712 PF00753 Metallo-beta-lactamase superfamily Clos_1713 PF02580 D-Tyr-tRNA(Tyr) deacylase Clos_1714 PF02824 TGS domain Clos_1714 PF04607 Region found in RelA / SpoT proteins Clos_1714 PF13291 ACT domain Clos_1715 PF00156 Phosphoribosyl transferase domain Clos_1716 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Clos_1716 PF17768 RecJ OB domain Clos_1716 PF02272 DHHA1 domain Clos_1716 PF01368 DHH family Clos_1717 PF00132 Bacterial transferase hexapeptide (six repeats) Clos_1718 PF04055 Radical SAM superfamily Clos_1721 PF02699 Preprotein translocase subunit Clos_1722 PF01702 Queuine tRNA-ribosyltransferase Clos_1723 PF02547 Queuosine biosynthesis protein Clos_1724 PF04122 Putative cell wall binding repeat 2 Clos_1724 PF08486 Stage II sporulation protein Clos_1725 PF05496 Holliday junction DNA helicase RuvB P-loop domain Clos_1725 PF05491 RuvB C-terminal winged helix domain Clos_1725 PF17864 RuvB AAA lid domain Clos_1726 PF07499 RuvA, C-terminal domain Clos_1726 PF01330 RuvA N terminal domain Clos_1727 PF02075 Crossover junction endodeoxyribonuclease RuvC Clos_1728 PF05362 Lon protease (S16) C-terminal proteolytic domain Clos_1728 PF13654 AAA domain Clos_1730 PF02632 BioY family Clos_1731 PF00849 RNA pseudouridylate synthase Clos_1731 PF01479 S4 domain Clos_1733 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_1733 PF13426 PAS domain Clos_1733 PF00672 HAMP domain Clos_1733 PF14827 Double sensory domain of two-component sensor kinase Clos_1733 PF00512 His Kinase A (phospho-acceptor) domain Clos_1734 PF00072 Response regulator receiver domain Clos_1734 PF00486 Transcriptional regulatory protein, C terminal Clos_1735 PF09105 Elongation factor SelB, winged helix Clos_1735 PF03144 Elongation factor Tu domain 2 Clos_1735 PF09107 Elongation factor SelB, winged helix Clos_1735 PF09106 Elongation factor SelB, winged helix Clos_1735 PF00009 Elongation factor Tu GTP binding domain Clos_1736 PF12390 Selenocysteine synthase N terminal Clos_1736 PF03841 L-seryl-tRNA selenium transferase Clos_1737 PF01235 Sodium:alanine symporter family Clos_1740 PF00768 D-alanyl-D-alanine carboxypeptidase Clos_1740 PF07943 Penicillin-binding protein 5, C-terminal domain Clos_1741 PF03313 Serine dehydratase alpha chain Clos_1742 PF03315 Serine dehydratase beta chain Clos_1742 PF01842 ACT domain Clos_1743 PF01042 Endoribonuclease L-PSP Clos_1746 PF03816 Cell envelope-related transcriptional attenuator domain Clos_1747 PF01966 HD domain Clos_1748 PF01467 Cytidylyltransferase-like Clos_1750 PF01018 GTP1/OBG Clos_1750 PF01926 50S ribosome-binding GTPase Clos_1750 PF09269 Domain of unknown function (DUF1967) Clos_1751 PF01016 Ribosomal L27 protein Clos_1753 PF00829 Ribosomal prokaryotic L21 protein Clos_1754 PF00575 S1 RNA binding domain Clos_1754 PF10150 Ribonuclease E/G family Clos_1757 PF02163 Peptidase family M50 Clos_1759 PF03776 Septum formation topological specificity factor MinE Clos_1760 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Clos_1762 PF03717 Penicillin-binding Protein dimerisation domain Clos_1762 PF00905 Penicillin binding protein transpeptidase domain Clos_1766 PF04002 RadC-like JAB domain Clos_1767 PF02545 Maf-like protein Clos_1770 PF00037 4Fe-4S binding domain Clos_1770 PF13187 4Fe-4S dicluster domain Clos_1770 PF04060 Putative Fe-S cluster Clos_1771 PF02508 Rnf-Nqr subunit, membrane protein Clos_1772 PF02508 Rnf-Nqr subunit, membrane protein Clos_1773 PF04205 FMN-binding domain Clos_1774 PF03116 NQR2, RnfD, RnfE family Clos_1775 PF10531 SLBB domain Clos_1775 PF13375 RnfC Barrel sandwich hybrid domain Clos_1775 PF13237 4Fe-4S dicluster domain Clos_1775 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Clos_1777 PF00877 NlpC/P60 family Clos_1777 PF01476 LysM domain Clos_1778 PF01709 Transcriptional regulator Clos_1779 PF02540 NAD synthase Clos_1781 PF01925 Sulfite exporter TauE/SafE Clos_1783 PF01205 Uncharacterized protein family UPF0029 Clos_1783 PF09186 Domain of unknown function (DUF1949) Clos_1786 PF13167 GTP-binding GTPase N-terminal Clos_1786 PF16360 GTP-binding GTPase Middle Region Clos_1786 PF01926 50S ribosome-binding GTPase Clos_1788 PF00912 Transglycosylase Clos_1788 PF00905 Penicillin binding protein transpeptidase domain Clos_1789 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Clos_1791 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Clos_1792 PF13782 Stage V sporulation protein AB Clos_1793 PF12164 Stage V sporulation protein AA Clos_1794 PF04545 Sigma-70, region 4 Clos_1794 PF04539 Sigma-70 region 3 Clos_1794 PF04542 Sigma-70 region 2 Clos_1795 PF13581 Histidine kinase-like ATPase domain Clos_1796 PF01740 STAS domain Clos_1797 PF13302 Acetyltransferase (GNAT) domain Clos_1797 PF13673 Acetyltransferase (GNAT) domain Clos_1797 PF03352 Methyladenine glycosylase Clos_1797 PF00117 Glutamine amidotransferase class-I Clos_1797 PF00958 GMP synthase C terminal domain Clos_1798 PF00857 Isochorismatase family Clos_1805 PF03600 Citrate transporter Clos_1806 PF00158 Sigma-54 interaction domain Clos_1806 PF00989 PAS fold Clos_1806 PF02954 Bacterial regulatory protein, Fis family Clos_1808 PF01554 MatE Clos_1809 PF13673 Acetyltransferase (GNAT) domain Clos_1811 PF00994 Probable molybdopterin binding domain Clos_1812 PF01967 MoaC family Clos_1813 PF02926 THUMP domain Clos_1813 PF02568 Thiamine biosynthesis protein (ThiI) Clos_1814 PF00266 Aminotransferase class-V Clos_1816 PF00710 Asparaginase, N-terminal Clos_1816 PF17763 Glutaminase/Asparaginase C-terminal domain Clos_1817 PF00580 UvrD/REP helicase N-terminal domain Clos_1817 PF13361 UvrD-like helicase C-terminal domain Clos_1818 PF00395 S-layer homology domain Clos_1818 PF00128 Alpha amylase, catalytic domain Clos_1818 PF02903 Alpha amylase, N-terminal ig-like domain Clos_1821 PF01381 Helix-turn-helix Clos_1827 PF00589 Phage integrase family Clos_1827 PF02899 Phage integrase, N-terminal SAM-like domain Clos_1828 PF01515 Phosphate acetyl/butaryl transferase Clos_1831 PF02310 B12 binding domain Clos_1831 PF04055 Radical SAM superfamily Clos_1835 PF04463 Protein of unknown function (DUF523) Clos_1836 PF00488 MutS domain V Clos_1836 PF01713 Smr domain Clos_1840 PF02915 Rubrerythrin Clos_1842 PF07670 Nucleoside recognition Clos_1843 PF07670 Nucleoside recognition Clos_1848 PF13958 Toxin ToxN, type III toxin-antitoxin system Clos_1853 PF01381 Helix-turn-helix Clos_1855 PF00145 C-5 cytosine-specific DNA methylase Clos_1856 PF09521 NgoPII restriction endonuclease Clos_1881 PF00436 Single-strand binding protein family Clos_1885 PF02903 Alpha amylase, N-terminal ig-like domain Clos_1885 PF00128 Alpha amylase, catalytic domain Clos_1885 PF00395 S-layer homology domain Clos_1890 PF10127 RNA repair pathway DNA polymerase beta family Clos_1893 PF13333 Integrase core domain Clos_1893 PF00665 Integrase core domain Clos_1893 PF13276 HTH-like domain Clos_1894 PF01527 Transposase Clos_1897 PF00145 C-5 cytosine-specific DNA methylase Clos_1907 PF00437 Type II/IV secretion system protein Clos_1914 PF03432 Relaxase/Mobilisation nuclease domain Clos_1921 PF12728 Helix-turn-helix domain Clos_1921 PF02661 Fic/DOC family Clos_1923 PF17762 HTH domain found in ParB protein Clos_1923 PF02195 ParB-like nuclease domain Clos_1924 PF13614 AAA domain Clos_1936 PF01544 CorA-like Mg2+ transporter protein Clos_1937 PF08386 TAP-like protein Clos_1937 PF00561 alpha/beta hydrolase fold Clos_1938 PF01139 tRNA-splicing ligase RtcB Clos_1939 PF00163 Ribosomal protein S4/S9 N-terminal domain Clos_1939 PF01479 S4 domain Clos_1940 PF01370 NAD dependent epimerase/dehydratase family Clos_1941 PF05193 Peptidase M16 inactive domain Clos_1941 PF00675 Insulinase (Peptidase family M16) Clos_1941 PF08367 Peptidase M16C associated Clos_1943 PF00994 Probable molybdopterin binding domain Clos_1943 PF18146 Damage-inducible protein CinA KH domain Clos_1943 PF02464 Competence-damaged protein Clos_1944 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Clos_1944 PF01476 LysM domain Clos_1945 PF00664 ABC transporter transmembrane region Clos_1945 PF00005 ABC transporter Clos_1946 PF00664 ABC transporter transmembrane region Clos_1946 PF00005 ABC transporter Clos_1949 PF03707 Bacterial signalling protein N terminal repeat Clos_1949 PF00563 EAL domain Clos_1949 PF00990 Diguanylate cyclase, GGDEF domain Clos_1950 PF00258 Flavodoxin Clos_1950 PF00753 Metallo-beta-lactamase superfamily Clos_1951 PF00860 Permease family Clos_1953 PF10371 Domain of unknown function Clos_1953 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Clos_1953 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Clos_1953 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clos_1953 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Clos_1954 PF00291 Pyridoxal-phosphate dependent enzyme Clos_1954 PF14821 Threonine synthase N terminus Clos_1955 PF00288 GHMP kinases N terminal domain Clos_1955 PF08544 GHMP kinases C terminal Clos_1956 PF13291 ACT domain Clos_1957 PF01070 FMN-dependent dehydrogenase Clos_1959 PF07085 DRTGG domain Clos_1959 PF01368 DHH family Clos_1959 PF00571 CBS domain Clos_1959 PF02833 DHHA2 domain Clos_1960 PF01584 CheW-like domain Clos_1960 PF00072 Response regulator receiver domain Clos_1965 PF02625 XdhC and CoxI family Clos_1965 PF13478 XdhC Rossmann domain Clos_1966 PF01554 MatE Clos_1967 PF04461 Protein of unknown function (DUF520) Clos_1970 PF05164 Cell division protein ZapA Clos_1971 PF01588 Putative tRNA binding domain Clos_1971 PF03484 tRNA synthetase B5 domain Clos_1971 PF03147 Ferredoxin-fold anticodon binding domain Clos_1971 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Clos_1971 PF03483 B3/4 domain Clos_1972 PF01409 tRNA synthetases class II core domain (F) Clos_1972 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Clos_1973 PF00588 SpoU rRNA Methylase family Clos_1973 PF08032 RNA 2'-O ribose methyltransferase substrate binding Clos_1974 PF02080 TrkA-C domain Clos_1974 PF02254 TrkA-N domain Clos_1975 PF02386 Cation transport protein Clos_1976 PF00453 Ribosomal protein L20 Clos_1977 PF01632 Ribosomal protein L35 Clos_1978 PF00707 Translation initiation factor IF-3, C-terminal domain Clos_1978 PF05198 Translation initiation factor IF-3, N-terminal domain Clos_1979 PF00004 ATPase family associated with various cellular activities (AAA) Clos_1979 PF01434 Peptidase family M41 Clos_1979 PF17862 AAA+ lid domain Clos_1981 PF04286 Protein of unknown function (DUF445) Clos_1984 PF17910 FeoB cytosolic helical domain Clos_1984 PF07670 Nucleoside recognition Clos_1984 PF02421 Ferrous iron transport protein B Clos_1984 PF07664 Ferrous iron transport protein B C terminus Clos_1985 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Clos_1986 PF00542 Ribosomal protein L7/L12 C-terminal domain Clos_1986 PF16320 Ribosomal protein L7/L12 dimerisation domain Clos_1987 PF00665 Integrase core domain Clos_1987 PF13333 Integrase core domain Clos_1987 PF13276 HTH-like domain Clos_1988 PF01527 Transposase Clos_2000 PF01527 Transposase Clos_2001 PF13333 Integrase core domain Clos_2001 PF13276 HTH-like domain Clos_2001 PF00665 Integrase core domain Clos_2003 PF01430 Hsp33 protein Clos_2005 PF00313 'Cold-shock' DNA-binding domain Clos_2006 PF13649 Methyltransferase domain Clos_2008 PF04960 Glutaminase Clos_2009 PF03129 Anticodon binding domain Clos_2009 PF02824 TGS domain Clos_2009 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Clos_2009 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clos_2010 PF00571 CBS domain Clos_2011 PF10502 Signal peptidase, peptidase S26 Clos_2017 PF01225 Mur ligase family, catalytic domain Clos_2017 PF02875 Mur ligase family, glutamate ligase domain Clos_2017 PF08245 Mur ligase middle domain Clos_2018 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain Clos_2018 PF01522 Polysaccharide deacetylase Clos_2019 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Clos_2020 PF00528 Binding-protein-dependent transport system inner membrane component Clos_2021 PF00005 ABC transporter Clos_2021 PF00571 CBS domain Clos_2022 PF12802 MarR family Clos_2023 PF00155 Aminotransferase class I and II Clos_2024 PF02690 Na+/Pi-cotransporter Clos_2025 PF00269 Small, acid-soluble spore proteins, alpha/beta type Clos_2028 PF02875 Mur ligase family, glutamate ligase domain Clos_2028 PF08245 Mur ligase middle domain Clos_2029 PF00145 C-5 cytosine-specific DNA methylase Clos_2033 PF12705 PD-(D/E)XK nuclease superfamily Clos_2033 PF00580 UvrD/REP helicase N-terminal domain Clos_2033 PF13361 UvrD-like helicase C-terminal domain Clos_2034 PF00012 Hsp70 protein Clos_2038 PF08264 Anticodon-binding domain of tRNA Clos_2038 PF00133 tRNA synthetases class I (I, L, M and V) Clos_2038 PF10458 Valyl tRNA synthetase tRNA binding arm Clos_2039 PF01066 CDP-alcohol phosphatidyltransferase Clos_2044 PF13344 Haloacid dehalogenase-like hydrolase Clos_2044 PF00293 NUDIX domain Clos_2047 PF00027 Cyclic nucleotide-binding domain Clos_2047 PF13545 Crp-like helix-turn-helix domain Clos_2049 PF00403 Heavy-metal-associated domain Clos_2050 PF03313 Serine dehydratase alpha chain Clos_2053 PF00689 Cation transporting ATPase, C-terminus Clos_2053 PF00690 Cation transporter/ATPase, N-terminus Clos_2054 PF02567 Phenazine biosynthesis-like protein Clos_2055 PF17954 Quercetinase C-terminal cupin domain Clos_2055 PF02678 Pirin Clos_2056 PF01641 SelR domain Clos_2062 PF00269 Small, acid-soluble spore proteins, alpha/beta type Clos_2065 PF01943 Polysaccharide biosynthesis protein Clos_2065 PF14667 Polysaccharide biosynthesis C-terminal domain Clos_2066 PF12848 ABC transporter Clos_2066 PF16326 ABC transporter C-terminal domain Clos_2066 PF00005 ABC transporter Clos_2068 PF01177 Asp/Glu/Hydantoin racemase Clos_2072 PF07486 Cell Wall Hydrolase Clos_2072 PF01471 Putative peptidoglycan binding domain Clos_2073 PF03448 MgtE intracellular N domain Clos_2073 PF01769 Divalent cation transporter Clos_2073 PF00571 CBS domain Clos_2074 PF01098 Cell cycle protein Clos_2075 PF02743 Cache domain Clos_2075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_2075 PF00672 HAMP domain Clos_2076 PF00269 Small, acid-soluble spore proteins, alpha/beta type Clos_2082 PF00005 ABC transporter Clos_2083 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_2084 PF00072 Response regulator receiver domain Clos_2084 PF00486 Transcriptional regulatory protein, C terminal Clos_2085 PF07136 Protein of unknown function (DUF1385) Clos_2088 PF01523 Putative modulator of DNA gyrase Clos_2090 PF00210 Ferritin-like domain Clos_2093 PF00005 ABC transporter Clos_2094 PF00528 Binding-protein-dependent transport system inner membrane component Clos_2095 PF00072 Response regulator receiver domain Clos_2099 PF01966 HD domain Clos_2100 PF00672 HAMP domain Clos_2100 PF07228 Stage II sporulation protein E (SpoIIE) Clos_2101 PF04205 FMN-binding domain Clos_2101 PF00890 FAD binding domain Clos_2102 PF00890 FAD binding domain Clos_2102 PF04205 FMN-binding domain Clos_2103 PF04205 FMN-binding domain Clos_2104 PF02424 ApbE family Clos_2106 PF02875 Mur ligase family, glutamate ligase domain Clos_2106 PF08443 RimK-like ATP-grasp domain Clos_2106 PF08245 Mur ligase middle domain Clos_2107 PF03575 Peptidase family S51 Clos_2108 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain Clos_2108 PF01522 Polysaccharide deacetylase Clos_2109 PF02690 Na+/Pi-cotransporter Clos_2110 PF00550 Phosphopantetheine attachment site Clos_2113 PF12804 MobA-like NTP transferase domain Clos_2114 PF17783 CvfB-like winged helix domain Clos_2114 PF13509 S1 domain Clos_2118 PF02645 Uncharacterised protein, DegV family COG1307 Clos_2120 PF02390 Putative methyltransferase Clos_2123 PF00579 tRNA synthetases class I (W and Y) Clos_2124 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Clos_2124 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Clos_2124 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Clos_2125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clos_2127 PF01268 Formate--tetrahydrofolate ligase Clos_2128 PF02743 Cache domain Clos_2128 PF00672 HAMP domain Clos_2128 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_2132 PF13545 Crp-like helix-turn-helix domain Clos_2132 PF00027 Cyclic nucleotide-binding domain Clos_2134 PF00950 ABC 3 transport family Clos_2135 PF00005 ABC transporter Clos_2136 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment Clos_2136 PF01297 Zinc-uptake complex component A periplasmic Clos_2137 PF00902 Sec-independent protein translocase protein (TatC) Clos_2138 PF02464 Competence-damaged protein Clos_2138 PF00994 Probable molybdopterin binding domain Clos_2139 PF13187 4Fe-4S dicluster domain Clos_2139 PF01645 Conserved region in glutamate synthase Clos_2140 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain Clos_2140 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Clos_2141 PF13247 4Fe-4S dicluster domain Clos_2141 PF12800 4Fe-4S binding domain Clos_2142 PF02625 XdhC and CoxI family Clos_2142 PF13478 XdhC Rossmann domain Clos_2143 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain Clos_2143 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Clos_2144 PF13247 4Fe-4S dicluster domain Clos_2144 PF12800 4Fe-4S binding domain Clos_2146 PF02416 mttA/Hcf106 family Clos_2147 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Clos_2147 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clos_2148 PF01869 BadF/BadG/BcrA/BcrD ATPase family Clos_2149 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component Clos_2150 PF01869 BadF/BadG/BcrA/BcrD ATPase family Clos_2153 PF13091 PLD-like domain Clos_2153 PF13396 Phospholipase_D-nuclease N-terminal Clos_2154 PF00990 Diguanylate cyclase, GGDEF domain Clos_2154 PF07694 5TMR of 5TMR-LYT Clos_2155 PF01131 DNA topoisomerase Clos_2155 PF01751 Toprim domain Clos_2157 PF08245 Mur ligase middle domain Clos_2157 PF02875 Mur ligase family, glutamate ligase domain Clos_2158 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Clos_2158 PF00005 ABC transporter Clos_2159 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Clos_2159 PF00005 ABC transporter Clos_2160 PF00528 Binding-protein-dependent transport system inner membrane component Clos_2161 PF00528 Binding-protein-dependent transport system inner membrane component Clos_2161 PF12911 N-terminal TM domain of oligopeptide transport permease C Clos_2162 PF00403 Heavy-metal-associated domain Clos_2163 PF01022 Bacterial regulatory protein, arsR family Clos_2165 PF00512 His Kinase A (phospho-acceptor) domain Clos_2165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_2165 PF00672 HAMP domain Clos_2166 PF00486 Transcriptional regulatory protein, C terminal Clos_2166 PF00072 Response regulator receiver domain Clos_2168 PF00301 Rubredoxin Clos_2170 PF01926 50S ribosome-binding GTPase Clos_2172 PF00004 ATPase family associated with various cellular activities (AAA) Clos_2172 PF05362 Lon protease (S16) C-terminal proteolytic domain Clos_2173 PF07724 AAA domain (Cdc48 subfamily) Clos_2173 PF06689 ClpX C4-type zinc finger Clos_2173 PF10431 C-terminal, D2-small domain, of ClpB protein Clos_2174 PF00574 Clp protease Clos_2175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Clos_2175 PF05698 Bacterial trigger factor protein (TF) C-terminus Clos_2175 PF05697 Bacterial trigger factor protein (TF) Clos_2176 PF00313 'Cold-shock' DNA-binding domain Clos_2178 PF13545 Crp-like helix-turn-helix domain Clos_2178 PF00027 Cyclic nucleotide-binding domain Clos_2179 PF00258 Flavodoxin Clos_2179 PF00753 Metallo-beta-lactamase superfamily Clos_2181 PF00696 Amino acid kinase family Clos_2183 PF04542 Sigma-70 region 2 Clos_2183 PF08281 Sigma-70, region 4 Clos_2185 PF04073 Aminoacyl-tRNA editing domain Clos_2186 PF00742 Homoserine dehydrogenase Clos_2186 PF03447 Homoserine dehydrogenase, NAD binding domain Clos_2186 PF01842 ACT domain Clos_2188 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Clos_2188 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Clos_2190 PF00156 Phosphoribosyl transferase domain Clos_2191 PF01180 Dihydroorotate dehydrogenase Clos_2192 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Clos_2193 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Clos_2196 PF04239 Protein of unknown function (DUF421) Clos_2197 PF00133 tRNA synthetases class I (I, L, M and V) Clos_2197 PF08264 Anticodon-binding domain of tRNA Clos_2198 PF01869 BadF/BadG/BcrA/BcrD ATPase family Clos_2199 PF08448 PAS fold Clos_2199 PF00990 Diguanylate cyclase, GGDEF domain Clos_2202 PF07670 Nucleoside recognition Clos_2203 PF07670 Nucleoside recognition Clos_2204 PF00672 HAMP domain Clos_2204 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_2204 PF02743 Cache domain Clos_2208 PF00300 Histidine phosphatase superfamily (branch 1) Clos_2209 PF02654 Cobalamin-5-phosphate synthase Clos_2210 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Clos_2211 PF00155 Aminotransferase class I and II Clos_2212 PF03186 CobD/Cbib protein Clos_2214 PF09370 Phosphoenolpyruvate hydrolase-like Clos_2215 PF00005 ABC transporter Clos_2216 PF00528 Binding-protein-dependent transport system inner membrane component Clos_2217 PF04346 Ethanolamine utilisation protein, EutH Clos_2218 PF01520 N-acetylmuramoyl-L-alanine amidase Clos_2219 PF00258 Flavodoxin Clos_2223 PF02769 AIR synthase related protein, C-terminal domain Clos_2223 PF00586 AIR synthase related protein, N-terminal domain Clos_2223 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Clos_2224 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Clos_2227 PF12849 PBP superfamily domain Clos_2232 PF13276 HTH-like domain Clos_2232 PF00665 Integrase core domain Clos_2232 PF13333 Integrase core domain Clos_2233 PF01527 Transposase Clos_2236 PF01695 IstB-like ATP binding protein Clos_2246 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Clos_2246 PF00989 PAS fold Clos_2246 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_2246 PF17203 Single cache domain 3 Clos_2247 PF04397 LytTr DNA-binding domain Clos_2247 PF00072 Response regulator receiver domain Clos_2250 PF00384 Molybdopterin oxidoreductase Clos_2250 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Clos_2250 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Clos_2251 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Clos_2251 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Clos_2251 PF00037 4Fe-4S binding domain Clos_2255 PF01541 GIY-YIG catalytic domain Clos_2255 PF12826 Helix-hairpin-helix motif Clos_2255 PF02151 UvrB/uvrC motif Clos_2255 PF08459 UvrC Helix-hairpin-helix N-terminal Clos_2257 PF17760 UvrA interaction domain Clos_2257 PF17755 UvrA DNA-binding domain Clos_2258 PF17757 UvrB interaction domain Clos_2258 PF12344 Ultra-violet resistance protein B Clos_2258 PF02151 UvrB/uvrC motif Clos_2258 PF04851 Type III restriction enzyme, res subunit Clos_2258 PF00271 Helicase conserved C-terminal domain Clos_2259 PF13180 PDZ domain Clos_2259 PF03572 Peptidase family S41 Clos_2260 PF01551 Peptidase family M23 Clos_2261 PF02687 FtsX-like permease family Clos_2261 PF18075 FtsX extracellular domain Clos_2262 PF00005 ABC transporter Clos_2263 PF01812 5-formyltetrahydrofolate cyclo-ligase family Clos_2266 PF02779 Transketolase, pyrimidine binding domain Clos_2266 PF02780 Transketolase, C-terminal domain Clos_2267 PF00456 Transketolase, thiamine diphosphate binding domain Clos_2268 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Clos_2268 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Clos_2269 PF03808 Glycosyl transferase WecB/TagA/CpsF family Clos_2273 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Clos_2275 PF01168 Alanine racemase, N-terminal domain Clos_2275 PF00842 Alanine racemase, C-terminal domain Clos_2276 PF01648 4'-phosphopantetheinyl transferase superfamily Clos_2281 PF12727 PBP superfamily domain Clos_2281 PF12728 Helix-turn-helix domain Clos_2282 PF00005 ABC transporter Clos_2283 PF00528 Binding-protein-dependent transport system inner membrane component Clos_2286 PF13726 Na+-H+ antiporter family Clos_2286 PF03553 Na+/H+ antiporter family Clos_2287 PF13520 Amino acid permease Clos_2288 PF13175 AAA ATPase domain Clos_2289 PF00149 Calcineurin-like phosphoesterase Clos_2289 PF12320 Type 5 capsule protein repressor C-terminal domain Clos_2290 PF12705 PD-(D/E)XK nuclease superfamily Clos_2290 PF00580 UvrD/REP helicase N-terminal domain Clos_2290 PF13361 UvrD-like helicase C-terminal domain Clos_2291 PF14815 NUDIX domain Clos_2291 PF00730 HhH-GPD superfamily base excision DNA repair protein Clos_2299 PF12848 ABC transporter Clos_2299 PF16326 ABC transporter C-terminal domain Clos_2299 PF00005 ABC transporter Clos_2300 PF12705 PD-(D/E)XK nuclease superfamily Clos_2302 PF08903 Domain of unknown function (DUF1846) Clos_2303 PF03601 Conserved hypothetical protein 698 Clos_2304 PF00155 Aminotransferase class I and II Clos_2306 PF00465 Iron-containing alcohol dehydrogenase Clos_2307 PF03358 NADPH-dependent FMN reductase Clos_2307 PF04205 FMN-binding domain Clos_2307 PF00890 FAD binding domain Clos_2309 PF02163 Peptidase family M50 Clos_2310 PF00004 ATPase family associated with various cellular activities (AAA) Clos_2310 PF06480 FtsH Extracellular Clos_2310 PF01434 Peptidase family M41 Clos_2310 PF17862 AAA+ lid domain Clos_2312 PF03323 Bacillus/Clostridium GerA spore germination protein Clos_2314 PF05343 M42 glutamyl aminopeptidase Clos_2315 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Clos_2317 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clos_2317 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Clos_2318 PF03372 Endonuclease/Exonuclease/phosphatase family Clos_2321 PF06445 GyrI-like small molecule binding domain Clos_2321 PF12833 Helix-turn-helix domain Clos_2326 PF13519 von Willebrand factor type A domain Clos_2326 PF07728 AAA domain (dynein-related subfamily) Clos_2326 PF17863 AAA lid domain Clos_2327 PF17863 AAA lid domain Clos_2327 PF01078 Magnesium chelatase, subunit ChlI Clos_2328 PF11965 Domain of unknown function (DUF3479) Clos_2328 PF02514 CobN/Magnesium Chelatase Clos_2329 PF01032 FecCD transport family Clos_2330 PF01497 Periplasmic binding protein Clos_2331 PF02915 Rubrerythrin Clos_2332 PF02666 Phosphatidylserine decarboxylase Clos_2337 PF01487 Type I 3-dehydroquinase Clos_2338 PF03060 Nitronate monooxygenase Clos_2339 PF01212 Beta-eliminating lyase Clos_2340 PF00271 Helicase conserved C-terminal domain Clos_2340 PF00270 DEAD/DEAH box helicase Clos_2341 PF00152 tRNA synthetases class II (D, K and N) Clos_2342 PF03466 LysR substrate binding domain Clos_2342 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Clos_2344 PF00375 Sodium:dicarboxylate symporter family Clos_2346 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain Clos_2346 PF01522 Polysaccharide deacetylase Clos_2348 PF01327 Polypeptide deformylase Clos_2351 PF01098 Cell cycle protein Clos_2352 PF03551 Transcriptional regulator PadR-like family Clos_2353 PF07690 Major Facilitator Superfamily Clos_2355 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Clos_2358 PF01910 Thiamine-binding protein Clos_2359 PF01470 Pyroglutamyl peptidase Clos_2360 PF01144 Coenzyme A transferase Clos_2361 PF01144 Coenzyme A transferase Clos_2362 PF00989 PAS fold Clos_2362 PF00158 Sigma-54 interaction domain Clos_2362 PF02954 Bacterial regulatory protein, Fis family Clos_2363 PF02335 Cytochrome c552 Clos_2364 PF05140 ResB-like family Clos_2365 PF01578 Cytochrome C assembly protein Clos_2367 PF01743 Poly A polymerase head domain Clos_2367 PF13735 tRNA nucleotidyltransferase domain 2 putative Clos_2367 PF12627 Probable RNA and SrmB- binding site of polymerase A Clos_2368 PF04073 Aminoacyl-tRNA editing domain Clos_2369 PF07786 Protein of unknown function (DUF1624) Clos_2369 PF04235 Protein of unknown function (DUF418) Clos_2370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_2370 PF00672 HAMP domain Clos_2370 PF02743 Cache domain Clos_2371 PF00753 Metallo-beta-lactamase superfamily Clos_2371 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Clos_2371 PF10996 Beta-Casp domain Clos_2373 PF00933 Glycosyl hydrolase family 3 N terminal domain Clos_2373 PF01915 Glycosyl hydrolase family 3 C-terminal domain Clos_2375 PF01048 Phosphorylase superfamily Clos_2376 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clos_2376 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Clos_2382 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Clos_2382 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Clos_2382 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Clos_2382 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Clos_2383 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Clos_2384 PF00672 HAMP domain Clos_2384 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_2385 PF00936 BMC domain Clos_2386 PF06130 Phosphate propanoyltransferase Clos_2387 PF00171 Aldehyde dehydrogenase family Clos_2387 PF00465 Iron-containing alcohol dehydrogenase Clos_2388 PF00936 BMC domain Clos_2389 PF06249 Ethanolamine utilisation protein EutQ Clos_2391 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Clos_2391 PF13237 4Fe-4S dicluster domain Clos_2391 PF13375 RnfC Barrel sandwich hybrid domain Clos_2391 PF10531 SLBB domain Clos_2395 PF10662 Ethanolamine utilisation - propanediol utilisation Clos_2396 PF00936 BMC domain Clos_2397 PF13187 4Fe-4S dicluster domain Clos_2397 PF04055 Radical SAM superfamily Clos_2398 PF02901 Pyruvate formate lyase-like Clos_2398 PF01228 Glycine radical Clos_2399 PF00465 Iron-containing alcohol dehydrogenase Clos_2399 PF00171 Aldehyde dehydrogenase family Clos_2400 PF00936 BMC domain Clos_2401 PF00936 BMC domain Clos_2405 PF00171 Aldehyde dehydrogenase family Clos_2405 PF00465 Iron-containing alcohol dehydrogenase Clos_2406 PF07694 5TMR of 5TMR-LYT Clos_2406 PF06580 Histidine kinase Clos_2407 PF12833 Helix-turn-helix domain Clos_2407 PF10114 Sensory domain found in PocR Clos_2413 PF00871 Acetokinase family Clos_2414 PF01515 Phosphate acetyl/butaryl transferase Clos_2415 PF00158 Sigma-54 interaction domain Clos_2415 PF00989 PAS fold Clos_2415 PF02954 Bacterial regulatory protein, Fis family Clos_2417 PF02457 DisA bacterial checkpoint controller nucleotide-binding Clos_2418 PF00202 Aminotransferase class-III Clos_2419 PF00202 Aminotransferase class-III Clos_2422 PF00462 Glutaredoxin Clos_2424 PF04239 Protein of unknown function (DUF421) Clos_2425 PF01814 Hemerythrin HHE cation binding domain Clos_2425 PF04405 Domain of Unknown function (DUF542) Clos_2426 PF01595 Cyclin M transmembrane N-terminal domain Clos_2426 PF03471 Transporter associated domain Clos_2426 PF00571 CBS domain Clos_2427 PF03734 L,D-transpeptidase catalytic domain Clos_2427 PF01476 LysM domain Clos_2428 PF00005 ABC transporter Clos_2429 PF01032 FecCD transport family Clos_2430 PF01032 FecCD transport family Clos_2433 PF01569 PAP2 superfamily Clos_2434 PF12849 PBP superfamily domain Clos_2435 PF03063 Prismane/CO dehydrogenase family Clos_2442 PF04199 Putative cyclase Clos_2443 PF05853 beta-keto acid cleavage enzyme Clos_2445 PF00989 PAS fold Clos_2445 PF02954 Bacterial regulatory protein, Fis family Clos_2445 PF00158 Sigma-54 interaction domain Clos_2447 PF00118 TCP-1/cpn60 chaperonin family Clos_2448 PF00166 Chaperonin 10 Kd subunit Clos_2454 PF00005 ABC transporter Clos_2455 PF01180 Dihydroorotate dehydrogenase Clos_2456 PF00356 Bacterial regulatory proteins, lacI family Clos_2457 PF07969 Amidohydrolase family Clos_2458 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Clos_2459 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Clos_2459 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Clos_2461 PF12838 4Fe-4S dicluster domain Clos_2464 PF06971 Putative DNA-binding protein N-terminus Clos_2464 PF02629 CoA binding domain Clos_2465 PF12848 ABC transporter Clos_2465 PF16326 ABC transporter C-terminal domain Clos_2465 PF00005 ABC transporter Clos_2468 PF00583 Acetyltransferase (GNAT) family Clos_2469 PF00814 Glycoprotease family Clos_2470 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Clos_2472 PF00072 Response regulator receiver domain Clos_2472 PF12833 Helix-turn-helix domain Clos_2473 PF01590 GAF domain Clos_2473 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_2473 PF00512 His Kinase A (phospho-acceptor) domain Clos_2473 PF08446 PAS fold Clos_2473 PF00360 Phytochrome region Clos_2474 PF12822 ECF transporter, substrate-specific component Clos_2476 PF01979 Amidohydrolase family Clos_2477 PF16921 Tex protein YqgF-like domain Clos_2477 PF09371 Tex-like protein N-terminal domain Clos_2477 PF00575 S1 RNA binding domain Clos_2477 PF17674 HHH domain Clos_2479 PF00669 Bacterial flagellin N-terminal helical region Clos_2479 PF00700 Bacterial flagellin C-terminal helical region Clos_2480 PF01312 FlhB HrpN YscU SpaS Family Clos_2483 PF02743 Cache domain Clos_2483 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_2483 PF00672 HAMP domain Clos_2484 PF00472 RF-1 domain Clos_2484 PF03462 PCRF domain Clos_2485 PF01043 SecA preprotein cross-linking domain Clos_2485 PF07516 SecA Wing and Scaffold domain Clos_2485 PF07517 SecA DEAD-like domain Clos_2485 PF02810 SEC-C motif Clos_2487 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Clos_2487 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Clos_2489 PF02561 Flagellar protein FliS Clos_2490 PF02465 Flagellar hook-associated protein 2 N-terminus Clos_2490 PF07195 Flagellar hook-associated protein 2 C-terminus Clos_2490 PF07196 Flagellin hook IN motif Clos_2493 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clos_2493 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Clos_2493 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Clos_2493 PF04324 BFD-like [2Fe-2S] binding domain Clos_2493 PF18267 Rubredoxin NAD+ reductase C-terminal domain Clos_2494 PF02599 Global regulator protein family Clos_2495 PF02623 FliW protein Clos_2496 PF02954 Bacterial regulatory protein, Fis family Clos_2496 PF13426 PAS domain Clos_2496 PF00158 Sigma-54 interaction domain Clos_2497 PF03553 Na+/H+ antiporter family Clos_2498 PF00005 ABC transporter Clos_2499 PF12399 Branched-chain amino acid ATP-binding cassette transporter Clos_2499 PF00005 ABC transporter Clos_2500 PF11862 Domain of unknown function (DUF3382) Clos_2500 PF02653 Branched-chain amino acid transport system / permease component Clos_2501 PF02653 Branched-chain amino acid transport system / permease component Clos_2506 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Clos_2510 PF08666 SAF domain Clos_2510 PF03102 NeuB family Clos_2513 PF02348 Cytidylyltransferase Clos_2514 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Clos_2515 PF02719 Polysaccharide biosynthesis protein Clos_2518 PF00700 Bacterial flagellin C-terminal helical region Clos_2518 PF00669 Bacterial flagellin N-terminal helical region Clos_2519 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_2519 PF00672 HAMP domain Clos_2519 PF02743 Cache domain Clos_2521 PF00460 Flagella basal body rod protein Clos_2521 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clos_2525 PF00156 Phosphoribosyl transferase domain Clos_2526 PF13538 UvrD-like helicase C-terminal domain Clos_2526 PF14490 Helix-hairpin-helix containing domain Clos_2526 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Clos_2530 PF04539 Sigma-70 region 3 Clos_2530 PF04542 Sigma-70 region 2 Clos_2530 PF00140 Sigma-70 factor, region 1.2 Clos_2530 PF03979 Sigma-70 factor, region 1.1 Clos_2530 PF04545 Sigma-70, region 4 Clos_2531 PF00438 S-adenosylmethionine synthetase, N-terminal domain Clos_2531 PF02773 S-adenosylmethionine synthetase, C-terminal domain Clos_2531 PF02772 S-adenosylmethionine synthetase, central domain Clos_2534 PF06949 Protein of unknown function (DUF1292) Clos_2535 PF00563 EAL domain Clos_2535 PF03707 Bacterial signalling protein N terminal repeat Clos_2535 PF00990 Diguanylate cyclase, GGDEF domain Clos_2536 PF07977 FabA-like domain Clos_2537 PF13416 Bacterial extracellular solute-binding protein Clos_2538 PF00528 Binding-protein-dependent transport system inner membrane component Clos_2539 PF00528 Binding-protein-dependent transport system inner membrane component Clos_2540 PF08402 TOBE domain Clos_2540 PF00005 ABC transporter Clos_2542 PF02308 MgtC family Clos_2543 PF02447 GntP family permease Clos_2544 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Clos_2545 PF07005 Sugar-binding N-terminal domain Clos_2545 PF17042 Nucleotide-binding C-terminal domain Clos_2546 PF08220 DeoR-like helix-turn-helix domain Clos_2546 PF00455 DeoR C terminal sensor domain Clos_2547 PF05257 CHAP domain Clos_2547 PF01476 LysM domain Clos_2548 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Clos_2548 PF10135 Rod binding protein Clos_2549 PF00460 Flagella basal body rod protein Clos_2549 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clos_2550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clos_2550 PF00460 Flagella basal body rod protein Clos_2552 PF12116 Stage III sporulation protein D Clos_2554 PF08486 Stage II sporulation protein Clos_2555 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Clos_2559 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Clos_2559 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Clos_2560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clos_2560 PF02874 ATP synthase alpha/beta family, beta-barrel domain Clos_2561 PF00231 ATP synthase Clos_2562 PF00306 ATP synthase alpha/beta chain, C terminal domain Clos_2562 PF02874 ATP synthase alpha/beta family, beta-barrel domain Clos_2562 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clos_2563 PF00213 ATP synthase delta (OSCP) subunit Clos_2564 PF00430 ATP synthase B/B' CF(0) Clos_2565 PF00137 ATP synthase subunit C Clos_2566 PF00119 ATP synthase A chain Clos_2569 PF02350 UDP-N-acetylglucosamine 2-epimerase Clos_2570 PF00953 Glycosyl transferase family 4 Clos_2571 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Clos_2573 PF02502 Ribose/Galactose Isomerase Clos_2574 PF01451 Low molecular weight phosphotyrosine protein phosphatase Clos_2575 PF01300 Telomere recombination Clos_2575 PF03481 Putative GTP-binding controlling metal-binding Clos_2576 PF00905 Penicillin binding protein transpeptidase domain Clos_2577 PF01098 Cell cycle protein Clos_2578 PF16697 Inner membrane component of T3SS, cytoplasmic domain Clos_2580 PF03462 PCRF domain Clos_2580 PF00472 RF-1 domain Clos_2581 PF05175 Methyltransferase small domain Clos_2581 PF17827 PrmC N-terminal domain Clos_2582 PF07136 Protein of unknown function (DUF1385) Clos_2585 PF00005 ABC transporter Clos_2587 PF13603 Leucyl-tRNA synthetase, Domain 2 Clos_2587 PF08264 Anticodon-binding domain of tRNA Clos_2587 PF09334 tRNA synthetases class I (M) Clos_2587 PF00133 tRNA synthetases class I (I, L, M and V) Clos_2589 PF00265 Thymidine kinase Clos_2590 PF01197 Ribosomal protein L31 Clos_2591 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clos_2591 PF07498 Rho termination factor, N-terminal domain Clos_2591 PF07497 Rho termination factor, RNA-binding domain Clos_2593 PF00528 Binding-protein-dependent transport system inner membrane component Clos_2594 PF00497 Bacterial extracellular solute-binding proteins, family 3 Clos_2595 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Clos_2596 PF00923 Transaldolase/Fructose-6-phosphate aldolase Clos_2597 PF05853 beta-keto acid cleavage enzyme Clos_2598 PF03061 Thioesterase superfamily Clos_2599 PF00209 Sodium:neurotransmitter symporter family Clos_2600 PF00209 Sodium:neurotransmitter symporter family Clos_2602 PF00395 S-layer homology domain Clos_2609 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_2609 PF00672 HAMP domain Clos_2609 PF02743 Cache domain Clos_2611 PF00873 AcrB/AcrD/AcrF family Clos_2612 PF00529 HlyD membrane-fusion protein of T1SS Clos_2612 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Clos_2614 PF12704 MacB-like periplasmic core domain Clos_2614 PF02687 FtsX-like permease family Clos_2614 PF00005 ABC transporter Clos_2616 PF00005 ABC transporter Clos_2617 PF00529 HlyD membrane-fusion protein of T1SS Clos_2617 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Clos_2619 PF00005 ABC transporter Clos_2620 PF08361 MAATS-type transcriptional repressor, C-terminal region Clos_2620 PF00440 Bacterial regulatory proteins, tetR family Clos_2623 PF00589 Phage integrase family Clos_2623 PF02899 Phage integrase, N-terminal SAM-like domain Clos_2625 PF00872 Transposase, Mutator family Clos_2627 PF00395 S-layer homology domain Clos_2628 PF00395 S-layer homology domain Clos_2629 PF07228 Stage II sporulation protein E (SpoIIE) Clos_2630 PF02541 Ppx/GppA phosphatase family Clos_2631 PF00575 S1 RNA binding domain Clos_2634 PF07873 YabP family Clos_2635 PF08486 Stage II sporulation protein Clos_2636 PF01479 S4 domain Clos_2637 PF00216 Bacterial DNA-binding protein Clos_2638 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clos_2638 PF03819 MazG nucleotide pyrophosphohydrolase domain Clos_2639 PF14667 Polysaccharide biosynthesis C-terminal domain Clos_2639 PF01943 Polysaccharide biosynthesis protein Clos_2640 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Clos_2640 PF15714 Stage V sporulation protein T C-terminal, transcription factor Clos_2641 PF05698 Bacterial trigger factor protein (TF) C-terminus Clos_2642 PF03461 TRCF domain Clos_2642 PF00271 Helicase conserved C-terminal domain Clos_2642 PF00270 DEAD/DEAH box helicase Clos_2642 PF17757 UvrB interaction domain Clos_2642 PF02559 CarD-like/TRCF domain Clos_2644 PF01195 Peptidyl-tRNA hydrolase Clos_2645 PF14572 Phosphoribosyl synthetase-associated domain Clos_2645 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Clos_2646 PF12804 MobA-like NTP transferase domain Clos_2646 PF00132 Bacterial transferase hexapeptide (six repeats) Clos_2646 PF14602 Hexapeptide repeat of succinyl-transferase Clos_2647 PF04026 SpoVG Clos_2648 PF00156 Phosphoribosyl transferase domain Clos_2648 PF09182 Bacterial purine repressor, N-terminal Clos_2649 PF01225 Mur ligase family, catalytic domain Clos_2649 PF08245 Mur ligase middle domain Clos_2649 PF02875 Mur ligase family, glutamate ligase domain Clos_2650 PF03816 Cell envelope-related transcriptional attenuator domain Clos_2651 PF11992 Domain of unknown function (DUF3488) Clos_2651 PF01841 Transglutaminase-like superfamily Clos_2651 PF13559 Domain of unknown function (DUF4129) Clos_2653 PF17863 AAA lid domain Clos_2653 PF07726 ATPase family associated with various cellular activities (AAA) Clos_2654 PF01546 Peptidase family M20/M25/M40 Clos_2654 PF07687 Peptidase dimerisation domain Clos_2655 PF03806 AbgT putative transporter family Clos_2657 PF00398 Ribosomal RNA adenine dimethylase Clos_2658 PF01751 Toprim domain Clos_2658 PF13331 Domain of unknown function (DUF4093) Clos_2659 PF06725 3D domain Clos_2659 PF03990 G5-linked-Ubiquitin-like domain Clos_2659 PF07501 G5 domain Clos_2660 PF00072 Response regulator receiver domain Clos_2661 PF01026 TatD related DNase Clos_2662 PF01588 Putative tRNA binding domain Clos_2662 PF09334 tRNA synthetases class I (M) Clos_2662 PF08264 Anticodon-binding domain of tRNA Clos_2664 PF07670 Nucleoside recognition Clos_2665 PF07670 Nucleoside recognition Clos_2666 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain Clos_2666 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Clos_2666 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Clos_2667 PF18277 AbrB C-terminal domain Clos_2667 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Clos_2668 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clos_2669 PF05175 Methyltransferase small domain Clos_2673 PF04542 Sigma-70 region 2 Clos_2674 PF03553 Na+/H+ antiporter family Clos_2677 PF00664 ABC transporter transmembrane region Clos_2677 PF00005 ABC transporter Clos_2678 PF00664 ABC transporter transmembrane region Clos_2678 PF00005 ABC transporter Clos_2680 PF01255 Putative undecaprenyl diphosphate synthase Clos_2681 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Clos_2681 PF02272 DHHA1 domain Clos_2681 PF01411 tRNA synthetases class II (A) Clos_2682 PF00528 Binding-protein-dependent transport system inner membrane component Clos_2683 PF00528 Binding-protein-dependent transport system inner membrane component Clos_2684 PF00005 ABC transporter Clos_2688 PF02901 Pyruvate formate lyase-like Clos_2688 PF01228 Glycine radical Clos_2689 PF00392 Bacterial regulatory proteins, gntR family Clos_2689 PF07729 FCD domain Clos_2690 PF00890 FAD binding domain Clos_2690 PF04205 FMN-binding domain Clos_2690 PF03358 NADPH-dependent FMN reductase Clos_2693 PF02581 Thiamine monophosphate synthase Clos_2694 PF02110 Hydroxyethylthiazole kinase family Clos_2695 PF08543 Phosphomethylpyrimidine kinase Clos_2697 PF01259 SAICAR synthetase Clos_2698 PF05525 Branched-chain amino acid transport protein Clos_2699 PF00488 MutS domain V Clos_2699 PF01713 Smr domain Clos_2700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_2700 PF00512 His Kinase A (phospho-acceptor) domain Clos_2701 PF00072 Response regulator receiver domain Clos_2701 PF00486 Transcriptional regulatory protein, C terminal Clos_2703 PF02653 Branched-chain amino acid transport system / permease component Clos_2704 PF00005 ABC transporter Clos_2706 PF00892 EamA-like transporter family Clos_2708 PF17746 SfsA N-terminal OB domain Clos_2708 PF03749 Sugar fermentation stimulation protein RE domain Clos_2709 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Clos_2710 PF00890 FAD binding domain Clos_2710 PF14537 Cytochrome c3 Clos_2711 PF01467 Cytidylyltransferase-like Clos_2712 PF00056 lactate/malate dehydrogenase, NAD binding domain Clos_2712 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Clos_2714 PF07664 Ferrous iron transport protein B C terminus Clos_2714 PF17910 FeoB cytosolic helical domain Clos_2714 PF02421 Ferrous iron transport protein B Clos_2714 PF07670 Nucleoside recognition Clos_2716 PF00578 AhpC/TSA family Clos_2717 PF02683 Cytochrome C biogenesis protein transmembrane region Clos_2718 PF03323 Bacillus/Clostridium GerA spore germination protein Clos_2724 PF04304 Protein of unknown function (DUF454) Clos_2728 PF00958 GMP synthase C terminal domain Clos_2728 PF03352 Methyladenine glycosylase Clos_2728 PF00117 Glutamine amidotransferase class-I Clos_2728 PF13302 Acetyltransferase (GNAT) domain Clos_2728 PF13673 Acetyltransferase (GNAT) domain Clos_2729 PF00583 Acetyltransferase (GNAT) family Clos_2729 PF13508 Acetyltransferase (GNAT) domain Clos_2730 PF13302 Acetyltransferase (GNAT) domain Clos_2732 PF01037 Lrp/AsnC ligand binding domain Clos_2733 PF00266 Aminotransferase class-V Clos_2734 PF08274 PhnA Zinc-Ribbon Clos_2734 PF03831 PhnA domain Clos_2737 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Clos_2738 PF12706 Beta-lactamase superfamily domain Clos_2739 PF03553 Na+/H+ antiporter family Clos_2740 PF00750 tRNA synthetases class I (R) Clos_2740 PF03485 Arginyl tRNA synthetase N terminal domain Clos_2740 PF05746 DALR anticodon binding domain Clos_2741 PF13419 Haloacid dehalogenase-like hydrolase Clos_2742 PF01235 Sodium:alanine symporter family Clos_2743 PF00557 Metallopeptidase family M24 Clos_2744 PF12833 Helix-turn-helix domain Clos_2745 PF06445 GyrI-like small molecule binding domain Clos_2745 PF12833 Helix-turn-helix domain Clos_2747 PF00892 EamA-like transporter family Clos_2748 PF12833 Helix-turn-helix domain Clos_2749 PF00881 Nitroreductase family Clos_2751 PF00005 ABC transporter Clos_2752 PF13411 MerR HTH family regulatory protein Clos_2752 PF07739 TipAS antibiotic-recognition domain Clos_2758 PF02645 Uncharacterised protein, DegV family COG1307 Clos_2759 PF00583 Acetyltransferase (GNAT) family Clos_2760 PF00196 Bacterial regulatory proteins, luxR family Clos_2760 PF00072 Response regulator receiver domain Clos_2761 PF00149 Calcineurin-like phosphoesterase Clos_2762 PF00805 Pentapeptide repeats (8 copies) Clos_2765 PF13649 Methyltransferase domain Clos_2766 PF08281 Sigma-70, region 4 Clos_2766 PF04542 Sigma-70 region 2 Clos_2771 PF01979 Amidohydrolase family Clos_2773 PF13411 MerR HTH family regulatory protein Clos_2774 PF00364 Biotin-requiring enzyme Clos_2774 PF00561 alpha/beta hydrolase fold Clos_2775 PF02590 Predicted SPOUT methyltransferase Clos_2777 PF13180 PDZ domain Clos_2778 PF00753 Metallo-beta-lactamase superfamily Clos_2779 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Clos_2783 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_2783 PF00512 His Kinase A (phospho-acceptor) domain Clos_2783 PF13426 PAS domain Clos_2783 PF00672 HAMP domain Clos_2784 PF00486 Transcriptional regulatory protein, C terminal Clos_2784 PF00072 Response regulator receiver domain Clos_2786 PF00082 Subtilase family Clos_2787 PF08668 HDOD domain Clos_2787 PF00563 EAL domain Clos_2788 PF00990 Diguanylate cyclase, GGDEF domain Clos_2789 PF02743 Cache domain Clos_2789 PF00672 HAMP domain Clos_2789 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clos_2790 PF04397 LytTr DNA-binding domain Clos_2790 PF00072 Response regulator receiver domain Clos_2791 PF06580 Histidine kinase Clos_2791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_2792 PF01551 Peptidase family M23 Clos_2792 PF01476 LysM domain Clos_2797 PF03796 DnaB-like helicase C terminal domain Clos_2797 PF00772 DnaB-like helicase N terminal domain Clos_2798 PF03948 Ribosomal protein L9, C-terminal domain Clos_2798 PF01281 Ribosomal protein L9, N-terminal domain Clos_2799 PF01368 DHH family Clos_2799 PF02272 DHHA1 domain Clos_2804 PF02562 PhoH-like protein Clos_2804 PF13638 PIN domain Clos_2805 PF01814 Hemerythrin HHE cation binding domain Clos_2806 PF02915 Rubrerythrin Clos_2808 PF10114 Sensory domain found in PocR Clos_2808 PF12833 Helix-turn-helix domain Clos_2809 PF00756 Putative esterase Clos_2810 PF00005 ABC transporter Clos_2811 PF01032 FecCD transport family Clos_2812 PF01032 FecCD transport family Clos_2813 PF01497 Periplasmic binding protein Clos_2816 PF01522 Polysaccharide deacetylase Clos_2819 PF01451 Low molecular weight phosphotyrosine protein phosphatase Clos_2820 PF01022 Bacterial regulatory protein, arsR family Clos_2823 PF00291 Pyridoxal-phosphate dependent enzyme Clos_2825 PF00158 Sigma-54 interaction domain Clos_2825 PF00072 Response regulator receiver domain Clos_2825 PF02954 Bacterial regulatory protein, Fis family Clos_2826 PF00989 PAS fold Clos_2826 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clos_2826 PF00512 His Kinase A (phospho-acceptor) domain Clos_2826 PF08447 PAS fold Clos_2827 PF00326 Prolyl oligopeptidase family Clos_2827 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region Clos_2836 PF01380 SIS domain Clos_2840 PF00293 NUDIX domain Clos_2844 PF00583 Acetyltransferase (GNAT) family Clos_2846 PF12833 Helix-turn-helix domain Clos_2846 PF06445 GyrI-like small molecule binding domain Clos_2851 PF00398 Ribosomal RNA adenine dimethylase Clos_2854 PF13662 Toprim domain Clos_2854 PF02132 RecR protein Clos_2855 PF02575 YbaB/EbfC DNA-binding family Clos_2856 PF12169 DNA polymerase III subunits gamma and tau domain III Clos_2858 PF06866 Protein of unknown function (DUF1256) Clos_2859 PF02557 D-alanyl-D-alanine carboxypeptidase Clos_2860 PF01820 D-ala D-ala ligase N-terminus Clos_2860 PF07478 D-ala D-ala ligase C-terminus Clos_2861 PF04294 VanW like protein Clos_2864 PF00781 Diacylglycerol kinase catalytic domain Clos_2866 PF00266 Aminotransferase class-V Clos_2867 PF02195 ParB-like nuclease domain Clos_2867 PF17762 HTH domain found in ParB protein Clos_2868 PF13614 AAA domain Clos_2869 PF02195 ParB-like nuclease domain Clos_2869 PF17762 HTH domain found in ParB protein Clos_2870 PF02527 rRNA small subunit methyltransferase G Clos_2871 PF01134 Glucose inhibited division protein A Clos_2871 PF13932 GidA associated domain Clos_2872 PF12631 MnmE helical domain Clos_2872 PF10396 GTP-binding protein TrmE N-terminus Clos_2872 PF01926 50S ribosome-binding GTPase Clos_2873 PF01424 R3H domain Clos_2873 PF14804 Jag N-terminus Clos_2874 PF02096 60Kd inner membrane protein Clos_2875 PF01809 Putative membrane protein insertion efficiency factor Clos_2876 PF00825 Ribonuclease P Clos_2877 PF00468 Ribosomal protein L34