locus-tag class description HYG84_00005 PF02629 CoA binding domain HYG84_00005 PF00549 CoA-ligase HYG84_00010 PF11392 Protein of unknown function (DUF2877) HYG84_00015 PF17853 GGDEF-like domain HYG84_00015 PF13556 PucR C-terminal helix-turn-helix domain HYG84_00015 PF07905 Purine catabolism regulatory protein-like family HYG84_00020 PF00860 Permease family HYG84_00025 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HYG84_00025 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HYG84_00030 PF00111 2Fe-2S iron-sulfur cluster binding domain HYG84_00030 PF01799 [2Fe-2S] binding domain HYG84_00035 PF00941 FAD binding domain in molybdopterin dehydrogenase HYG84_00035 PF03450 CO dehydrogenase flavoprotein C-terminal domain HYG84_00040 PF01554 MatE HYG84_00050 PF13302 Acetyltransferase (GNAT) domain HYG84_00055 PF17922 Tetracyclin repressor-like, C-terminal domain HYG84_00055 PF00440 Bacterial regulatory proteins, tetR family HYG84_00060 PF00814 Glycoprotease family HYG84_00060 PF00583 Acetyltransferase (GNAT) family HYG84_00065 PF01872 RibD C-terminal domain HYG84_00070 PF00155 Aminotransferase class I and II HYG84_00070 PF00392 Bacterial regulatory proteins, gntR family HYG84_00080 PF01208 Uroporphyrinogen decarboxylase (URO-D) HYG84_00090 PF01208 Uroporphyrinogen decarboxylase (URO-D) HYG84_00095 PF02607 B12 binding domain HYG84_00095 PF02310 B12 binding domain HYG84_00105 PF00684 DnaJ central domain HYG84_00105 PF01556 DnaJ C terminal domain HYG84_00105 PF00226 DnaJ domain HYG84_00115 PF00133 tRNA synthetases class I (I, L, M and V) HYG84_00115 PF08264 Anticodon-binding domain of tRNA HYG84_00120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_00125 PF00072 Response regulator receiver domain HYG84_00125 PF00486 Transcriptional regulatory protein, C terminal HYG84_00135 PF00005 ABC transporter HYG84_00150 PF01276 Orn/Lys/Arg decarboxylase, major domain HYG84_00150 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HYG84_00160 PF04294 VanW like protein HYG84_00170 PF06249 Ethanolamine utilisation protein EutQ HYG84_00175 PF04346 Ethanolamine utilisation protein, EutH HYG84_00180 PF03319 Ethanolamine utilisation protein EutN/carboxysome HYG84_00190 PF06130 Phosphate propanoyltransferase HYG84_00200 PF00936 BMC domain HYG84_00205 PF00171 Aldehyde dehydrogenase family HYG84_00205 PF00465 Iron-containing alcohol dehydrogenase HYG84_00210 PF00936 BMC domain HYG84_00215 PF00936 BMC domain HYG84_00220 PF05985 Ethanolamine ammonia-lyase light chain (EutC) HYG84_00225 PF06751 Ethanolamine ammonia lyase large subunit (EutB) HYG84_00230 PF06277 Ethanolamine utilisation protein EutA HYG84_00235 PF00936 BMC domain HYG84_00240 PF00465 Iron-containing alcohol dehydrogenase HYG84_00245 PF01923 Cobalamin adenosyltransferase HYG84_00250 PF10662 Ethanolamine utilisation - propanediol utilisation HYG84_00255 PF00936 BMC domain HYG84_00290 PF08281 Sigma-70, region 4 HYG84_00290 PF04542 Sigma-70 region 2 HYG84_00300 PF03466 LysR substrate binding domain HYG84_00300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYG84_00335 PF04239 Protein of unknown function (DUF421) HYG84_00350 PF05958 tRNA (Uracil-5-)-methyltransferase HYG84_00355 PF00849 RNA pseudouridylate synthase HYG84_00355 PF01479 S4 domain HYG84_00360 PF01066 CDP-alcohol phosphatidyltransferase HYG84_00365 PF01116 Fructose-bisphosphate aldolase class-II HYG84_00375 PF04607 Region found in RelA / SpoT proteins HYG84_00380 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HYG84_00380 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HYG84_00395 PF04055 Radical SAM superfamily HYG84_00395 PF16199 Radical_SAM C-terminal domain HYG84_00415 PF00005 ABC transporter HYG84_00420 PF00440 Bacterial regulatory proteins, tetR family HYG84_00425 PF00395 S-layer homology domain HYG84_00425 PF06452 Carbohydrate family 9 binding domain-like HYG84_00425 PF00331 Glycosyl hydrolase family 10 HYG84_00425 PF02018 Carbohydrate binding domain HYG84_00440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HYG84_00445 PF00682 HMGL-like HYG84_00455 PF02515 CoA-transferase family III HYG84_00460 PF02954 Bacterial regulatory protein, Fis family HYG84_00460 PF13426 PAS domain HYG84_00460 PF00158 Sigma-54 interaction domain HYG84_00465 PF03144 Elongation factor Tu domain 2 HYG84_00465 PF00009 Elongation factor Tu GTP binding domain HYG84_00465 PF16658 Class II release factor RF3, C-terminal domain HYG84_00480 PF00005 ABC transporter HYG84_00485 PF00392 Bacterial regulatory proteins, gntR family HYG84_00500 PF02342 TerD domain HYG84_00505 PF02342 TerD domain HYG84_00515 PF02342 TerD domain HYG84_00520 PF05816 Toxic anion resistance protein (TelA) HYG84_00525 PF14266 Putative component of 'biosynthetic module' HYG84_00540 PF04542 Sigma-70 region 2 HYG84_00540 PF08281 Sigma-70, region 4 HYG84_00545 PF07508 Recombinase HYG84_00545 PF00239 Resolvase, N terminal domain HYG84_00545 PF13408 Recombinase zinc beta ribbon domain HYG84_00560 PF00465 Iron-containing alcohol dehydrogenase HYG84_00575 PF13538 UvrD-like helicase C-terminal domain HYG84_00580 PF01479 S4 domain HYG84_00580 PF00849 RNA pseudouridylate synthase HYG84_00585 PF10672 S-adenosylmethionine-dependent methyltransferase HYG84_00585 PF02926 THUMP domain HYG84_00585 PF01170 Putative RNA methylase family UPF0020 HYG84_00595 PF03062 MBOAT, membrane-bound O-acyltransferase family HYG84_00605 PF02638 Glycosyl hydrolase-like 10 HYG84_00610 PF00664 ABC transporter transmembrane region HYG84_00610 PF00005 ABC transporter HYG84_00615 PF00005 ABC transporter HYG84_00615 PF00664 ABC transporter transmembrane region HYG84_00625 PF12833 Helix-turn-helix domain HYG84_00630 PF02557 D-alanyl-D-alanine carboxypeptidase HYG84_00635 PF00301 Rubredoxin HYG84_00645 PF00037 4Fe-4S binding domain HYG84_00645 PF02906 Iron only hydrogenase large subunit, C-terminal domain HYG84_00645 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HYG84_00645 PF02256 Iron hydrogenase small subunit HYG84_00650 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HYG84_00650 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HYG84_00650 PF00037 4Fe-4S binding domain HYG84_00670 PF16868 NMT1-like family HYG84_00680 PF00999 Sodium/hydrogen exchanger family HYG84_00680 PF03471 Transporter associated domain HYG84_00680 PF02080 TrkA-C domain HYG84_00695 PF08534 Redoxin HYG84_00700 PF03167 Uracil DNA glycosylase superfamily HYG84_00715 PF03477 ATP cone domain HYG84_00715 PF13597 Anaerobic ribonucleoside-triphosphate reductase HYG84_00720 PF04055 Radical SAM superfamily HYG84_00730 PF12146 Serine aminopeptidase, S33 HYG84_00735 PF00766 Electron transfer flavoprotein FAD-binding domain HYG84_00735 PF01012 Electron transfer flavoprotein domain HYG84_00740 PF01012 Electron transfer flavoprotein domain HYG84_00745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HYG84_00745 PF02770 Acyl-CoA dehydrogenase, middle domain HYG84_00745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HYG84_00750 PF02386 Cation transport protein HYG84_00755 PF02080 TrkA-C domain HYG84_00755 PF02254 TrkA-N domain HYG84_00760 PF00005 ABC transporter HYG84_00760 PF12848 ABC transporter HYG84_00765 PF01139 tRNA-splicing ligase RtcB HYG84_00770 PF00571 CBS domain HYG84_00770 PF03471 Transporter associated domain HYG84_00770 PF01595 Cyclin M transmembrane N-terminal domain HYG84_00775 PF08543 Phosphomethylpyrimidine kinase HYG84_00775 PF02581 Thiamine monophosphate synthase HYG84_00780 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HYG84_00785 PF13411 MerR HTH family regulatory protein HYG84_00785 PF07739 TipAS antibiotic-recognition domain HYG84_00790 PF00005 ABC transporter HYG84_00795 PF00664 ABC transporter transmembrane region HYG84_00795 PF00005 ABC transporter HYG84_00800 PF18801 response regulator aspartate phosphatase H, N terminal HYG84_00805 PF00291 Pyridoxal-phosphate dependent enzyme HYG84_00810 PF02073 Thermophilic metalloprotease (M29) HYG84_00815 PF00535 Glycosyl transferase family 2 HYG84_00820 PF00535 Glycosyl transferase family 2 HYG84_00825 PF01820 D-ala D-ala ligase N-terminus HYG84_00825 PF07478 D-ala D-ala ligase C-terminus HYG84_00830 PF00291 Pyridoxal-phosphate dependent enzyme HYG84_00835 PF13302 Acetyltransferase (GNAT) domain HYG84_00840 PF13419 Haloacid dehalogenase-like hydrolase HYG84_00845 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HYG84_00850 PF00132 Bacterial transferase hexapeptide (six repeats) HYG84_00850 PF12464 Maltose acetyltransferase HYG84_00850 PF14602 Hexapeptide repeat of succinyl-transferase HYG84_00855 PF08485 Polysaccharide biosynthesis protein C-terminal HYG84_00855 PF02719 Polysaccharide biosynthesis protein HYG84_00860 PF01432 Peptidase family M3 HYG84_00860 PF08439 Oligopeptidase F HYG84_00865 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HYG84_00865 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HYG84_00865 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HYG84_00875 PF03553 Na+/H+ antiporter family HYG84_00880 PF03033 Glycosyltransferase family 28 N-terminal domain HYG84_00880 PF04101 Glycosyltransferase family 28 C-terminal domain HYG84_00895 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYG84_00900 PF00085 Thioredoxin HYG84_00905 PF02535 ZIP Zinc transporter HYG84_00915 PF00005 ABC transporter HYG84_00920 PF00005 ABC transporter HYG84_00920 PF02687 FtsX-like permease family HYG84_00920 PF12704 MacB-like periplasmic core domain HYG84_00925 PF00072 Response regulator receiver domain HYG84_00925 PF00486 Transcriptional regulatory protein, C terminal HYG84_00930 PF00672 HAMP domain HYG84_00930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_00930 PF18698 Histidine kinase sensor domain HYG84_00930 PF00512 His Kinase A (phospho-acceptor) domain HYG84_00930 PF00989 PAS fold HYG84_00945 PF00860 Permease family HYG84_00970 PF04542 Sigma-70 region 2 HYG84_00970 PF08281 Sigma-70, region 4 HYG84_00975 PF00578 AhpC/TSA family HYG84_00985 PF13732 Domain of unknown function (DUF4162) HYG84_00985 PF00005 ABC transporter HYG84_01005 PF00005 ABC transporter HYG84_01005 PF13732 Domain of unknown function (DUF4162) HYG84_01020 PF13520 Amino acid permease HYG84_01025 PF07969 Amidohydrolase family HYG84_01035 PF04542 Sigma-70 region 2 HYG84_01035 PF08281 Sigma-70, region 4 HYG84_01040 PF00483 Nucleotidyl transferase HYG84_01060 PF13580 SIS domain HYG84_01065 PF16363 GDP-mannose 4,6 dehydratase HYG84_01070 PF08544 GHMP kinases C terminal HYG84_01070 PF00288 GHMP kinases N terminal domain HYG84_01075 PF03816 Cell envelope-related transcriptional attenuator domain HYG84_01085 PF07883 Cupin domain HYG84_01115 PF00092 von Willebrand factor type A domain HYG84_01130 PF06100 MCRA family HYG84_01165 PF03062 MBOAT, membrane-bound O-acyltransferase family HYG84_01185 PF06445 GyrI-like small molecule binding domain HYG84_01185 PF13411 MerR HTH family regulatory protein HYG84_01190 PF00664 ABC transporter transmembrane region HYG84_01190 PF00005 ABC transporter HYG84_01195 PF00664 ABC transporter transmembrane region HYG84_01195 PF00005 ABC transporter HYG84_01205 PF12848 ABC transporter HYG84_01205 PF00005 ABC transporter HYG84_01210 PF07282 Putative transposase DNA-binding domain HYG84_01210 PF01385 Probable transposase HYG84_01210 PF12323 Helix-turn-helix domain HYG84_01225 PF09383 NIL domain HYG84_01225 PF00005 ABC transporter HYG84_01235 PF03193 RsgA GTPase HYG84_01255 PF00512 His Kinase A (phospho-acceptor) domain HYG84_01255 PF00672 HAMP domain HYG84_01255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_01260 PF00486 Transcriptional regulatory protein, C terminal HYG84_01260 PF00072 Response regulator receiver domain HYG84_01265 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HYG84_01265 PF01348 Type II intron maturase HYG84_01285 PF07516 SecA Wing and Scaffold domain HYG84_01285 PF01043 SecA preprotein cross-linking domain HYG84_01285 PF07517 SecA DEAD-like domain HYG84_01285 PF02810 SEC-C motif HYG84_01330 PF00005 ABC transporter HYG84_01440 PF02899 Phage integrase, N-terminal SAM-like domain HYG84_01440 PF00589 Phage integrase family HYG84_01445 PF01938 TRAM domain HYG84_01445 PF05958 tRNA (Uracil-5-)-methyltransferase HYG84_01465 PF03061 Thioesterase superfamily HYG84_01470 PF00224 Pyruvate kinase, barrel domain HYG84_01470 PF02887 Pyruvate kinase, alpha/beta domain HYG84_01470 PF00391 PEP-utilising enzyme, mobile domain HYG84_01475 PF00365 Phosphofructokinase HYG84_01485 PF01336 OB-fold nucleic acid binding domain HYG84_01485 PF02811 PHP domain HYG84_01485 PF14579 Helix-hairpin-helix motif HYG84_01485 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HYG84_01485 PF07733 Bacterial DNA polymerase III alpha NTPase domain HYG84_01490 PF01348 Type II intron maturase HYG84_01490 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HYG84_01500 PF00005 ABC transporter HYG84_01510 PF07837 Formiminotransferase domain, N-terminal subdomain HYG84_01510 PF02971 Formiminotransferase domain HYG84_01515 PF01175 Urocanase Rossmann-like domain HYG84_01515 PF17392 Urocanase C-terminal domain HYG84_01515 PF17391 Urocanase N-terminal domain HYG84_01520 PF02650 WhiA C-terminal HTH domain HYG84_01520 PF10298 WhiA N-terminal LAGLIDADG-like domain HYG84_01520 PF14527 WhiA LAGLIDADG-like domain HYG84_01525 PF00293 NUDIX domain HYG84_01530 PF01933 Uncharacterised protein family UPF0052 HYG84_01535 PF03668 P-loop ATPase protein family HYG84_01540 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HYG84_01540 PF01565 FAD binding domain HYG84_01550 PF04055 Radical SAM superfamily HYG84_01550 PF06463 Molybdenum Cofactor Synthesis C HYG84_01560 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HYG84_01560 PF00037 4Fe-4S binding domain HYG84_01560 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HYG84_01570 PF08459 UvrC Helix-hairpin-helix N-terminal HYG84_01570 PF02151 UvrB/uvrC motif HYG84_01570 PF12826 Helix-hairpin-helix motif HYG84_01570 PF01541 GIY-YIG catalytic domain HYG84_01580 PF17755 UvrA DNA-binding domain HYG84_01580 PF17760 UvrA interaction domain HYG84_01585 PF00271 Helicase conserved C-terminal domain HYG84_01585 PF04851 Type III restriction enzyme, res subunit HYG84_01585 PF02151 UvrB/uvrC motif HYG84_01585 PF17757 UvrB interaction domain HYG84_01585 PF12344 Ultra-violet resistance protein B HYG84_01595 PF13180 PDZ domain HYG84_01595 PF03572 Peptidase family S41 HYG84_01600 PF04225 Opacity-associated protein A LysM-like domain HYG84_01600 PF01551 Peptidase family M23 HYG84_01605 PF02687 FtsX-like permease family HYG84_01605 PF18075 FtsX extracellular domain HYG84_01610 PF00005 ABC transporter HYG84_01615 PF01812 5-formyltetrahydrofolate cyclo-ligase family HYG84_01620 PF04794 YdjC-like protein HYG84_01625 PF02056 Family 4 glycosyl hydrolase HYG84_01625 PF11975 Family 4 glycosyl hydrolase C-terminal domain HYG84_01630 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit HYG84_01635 PF02378 Phosphotransferase system, EIIC HYG84_01640 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HYG84_01645 PF00158 Sigma-54 interaction domain HYG84_01645 PF03610 PTS system fructose IIA component HYG84_01645 PF00874 PRD domain HYG84_01660 PF02779 Transketolase, pyrimidine binding domain HYG84_01660 PF02780 Transketolase, C-terminal domain HYG84_01665 PF00456 Transketolase, thiamine diphosphate binding domain HYG84_01670 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 HYG84_01670 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) HYG84_01675 PF03808 Glycosyl transferase WecB/TagA/CpsF family HYG84_01695 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HYG84_01705 PF00842 Alanine racemase, C-terminal domain HYG84_01705 PF01168 Alanine racemase, N-terminal domain HYG84_01715 PF01648 4'-phosphopantetheinyl transferase superfamily HYG84_01730 PF00005 ABC transporter HYG84_01730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HYG84_01735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HYG84_01735 PF00005 ABC transporter HYG84_01740 PF12911 N-terminal TM domain of oligopeptide transport permease C HYG84_01740 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_01745 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_01750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HYG84_01760 PF00005 ABC transporter HYG84_01760 PF00664 ABC transporter transmembrane region HYG84_01765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HYG84_01770 PF01261 Xylose isomerase-like TIM barrel HYG84_01805 PF00005 ABC transporter HYG84_01820 PF00072 Response regulator receiver domain HYG84_01820 PF00486 Transcriptional regulatory protein, C terminal HYG84_01825 PF00512 His Kinase A (phospho-acceptor) domain HYG84_01825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_01845 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HYG84_01850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HYG84_01855 PF02567 Phenazine biosynthesis-like protein HYG84_01865 PF01522 Polysaccharide deacetylase HYG84_01870 PF13175 AAA ATPase domain HYG84_01875 PF12320 Type 5 capsule protein repressor C-terminal domain HYG84_01875 PF00149 Calcineurin-like phosphoesterase HYG84_01880 PF12705 PD-(D/E)XK nuclease superfamily HYG84_01880 PF13361 UvrD-like helicase C-terminal domain HYG84_01880 PF00580 UvrD/REP helicase N-terminal domain HYG84_01885 PF12705 PD-(D/E)XK nuclease superfamily HYG84_01890 PF00465 Iron-containing alcohol dehydrogenase HYG84_01905 PF00664 ABC transporter transmembrane region HYG84_01905 PF00005 ABC transporter HYG84_01910 PF04055 Radical SAM superfamily HYG84_01940 PF00072 Response regulator receiver domain HYG84_01940 PF00486 Transcriptional regulatory protein, C terminal HYG84_01960 PF08903 Domain of unknown function (DUF1846) HYG84_01965 PF03601 Conserved hypothetical protein 698 HYG84_01970 PF02163 Peptidase family M50 HYG84_01975 PF17862 AAA+ lid domain HYG84_01975 PF06480 FtsH Extracellular HYG84_01975 PF01434 Peptidase family M41 HYG84_01975 PF00004 ATPase family associated with various cellular activities (AAA) HYG84_01985 PF05343 M42 glutamyl aminopeptidase HYG84_01990 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) HYG84_01995 PF03372 Endonuclease/Exonuclease/phosphatase family HYG84_02000 PF04055 Radical SAM superfamily HYG84_02005 PF12833 Helix-turn-helix domain HYG84_02005 PF06445 GyrI-like small molecule binding domain HYG84_02010 PF13649 Methyltransferase domain HYG84_02040 PF01047 MarR family HYG84_02045 PF00107 Zinc-binding dehydrogenase HYG84_02045 PF08240 Alcohol dehydrogenase GroES-like domain HYG84_02055 PF01177 Asp/Glu/Hydantoin racemase HYG84_02065 PF13188 PAS domain HYG84_02065 PF00158 Sigma-54 interaction domain HYG84_02065 PF02954 Bacterial regulatory protein, Fis family HYG84_02070 PF00512 His Kinase A (phospho-acceptor) domain HYG84_02070 PF00989 PAS fold HYG84_02070 PF16736 Single Cache-like HYG84_02070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_02075 PF00486 Transcriptional regulatory protein, C terminal HYG84_02075 PF00072 Response regulator receiver domain HYG84_02095 PF12833 Helix-turn-helix domain HYG84_02110 PF02915 Rubrerythrin HYG84_02115 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HYG84_02120 PF01979 Amidohydrolase family HYG84_02125 PF01380 SIS domain HYG84_02125 PF01418 Helix-turn-helix domain, rpiR family HYG84_02135 PF02378 Phosphotransferase system, EIIC HYG84_02135 PF00367 phosphotransferase system, EIIB HYG84_02140 PF13580 SIS domain HYG84_02145 PF02666 Phosphatidylserine decarboxylase HYG84_02155 PF00156 Phosphoribosyl transferase domain HYG84_02160 PF01180 Dihydroorotate dehydrogenase HYG84_02165 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B HYG84_02165 PF00970 Oxidoreductase FAD-binding domain HYG84_02170 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HYG84_02175 PF01979 Amidohydrolase family HYG84_02185 PF00149 Calcineurin-like phosphoesterase HYG84_02190 PF01487 Type I 3-dehydroquinase HYG84_02195 PF03060 Nitronate monooxygenase HYG84_02200 PF01212 Beta-eliminating lyase HYG84_02205 PF00271 Helicase conserved C-terminal domain HYG84_02205 PF00270 DEAD/DEAH box helicase HYG84_02210 PF14537 Cytochrome c3 HYG84_02210 PF00890 FAD binding domain HYG84_02220 PF00664 ABC transporter transmembrane region HYG84_02220 PF00005 ABC transporter HYG84_02220 PF03412 Peptidase C39 family HYG84_02225 PF00152 tRNA synthetases class II (D, K and N) HYG84_02235 PF01522 Polysaccharide deacetylase HYG84_02240 PF17853 GGDEF-like domain HYG84_02240 PF13556 PucR C-terminal helix-turn-helix domain HYG84_02240 PF07905 Purine catabolism regulatory protein-like family HYG84_02245 PF00696 Amino acid kinase family HYG84_02250 PF00375 Sodium:dicarboxylate symporter family HYG84_02260 PF06545 Protein of unknown function (DUF1116) HYG84_02265 PF02629 CoA binding domain HYG84_02265 PF00549 CoA-ligase HYG84_02270 PF02615 Malate/L-lactate dehydrogenase HYG84_02275 PF07883 Cupin domain HYG84_02275 PF05899 Protein of unknown function (DUF861) HYG84_02280 PF07690 Major Facilitator Superfamily HYG84_02285 PF01546 Peptidase family M20/M25/M40 HYG84_02290 PF07859 alpha/beta hydrolase fold HYG84_02300 PF01554 MatE HYG84_02305 PF01098 Cell cycle protein HYG84_02310 PF03551 Transcriptional regulator PadR-like family HYG84_02325 PF07690 Major Facilitator Superfamily HYG84_02335 PF00005 ABC transporter HYG84_02345 PF04011 LemA family HYG84_02360 PF08281 Sigma-70, region 4 HYG84_02360 PF04542 Sigma-70 region 2 HYG84_02365 PF01910 Thiamine-binding protein HYG84_02380 PF00005 ABC transporter HYG84_02385 PF01470 Pyroglutamyl peptidase HYG84_02390 PF01144 Coenzyme A transferase HYG84_02395 PF01144 Coenzyme A transferase HYG84_02400 PF02954 Bacterial regulatory protein, Fis family HYG84_02400 PF00989 PAS fold HYG84_02400 PF00158 Sigma-54 interaction domain HYG84_02410 PF05140 ResB-like family HYG84_02415 PF01578 Cytochrome C assembly protein HYG84_02420 PF02687 FtsX-like permease family HYG84_02425 PF00005 ABC transporter HYG84_02430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_02435 PF00072 Response regulator receiver domain HYG84_02435 PF00486 Transcriptional regulatory protein, C terminal HYG84_02450 PF02743 Cache domain HYG84_02450 PF00672 HAMP domain HYG84_02450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_02455 PF10996 Beta-Casp domain HYG84_02455 PF00753 Metallo-beta-lactamase superfamily HYG84_02455 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HYG84_02460 PF13726 Na+-H+ antiporter family HYG84_02460 PF03553 Na+/H+ antiporter family HYG84_02465 PF00933 Glycosyl hydrolase family 3 N terminal domain HYG84_02465 PF01915 Glycosyl hydrolase family 3 C-terminal domain HYG84_02470 PF01048 Phosphorylase superfamily HYG84_02475 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYG84_02475 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HYG84_02480 PF02653 Branched-chain amino acid transport system / permease component HYG84_02485 PF02653 Branched-chain amino acid transport system / permease component HYG84_02490 PF00005 ABC transporter HYG84_02495 PF02608 ABC transporter substrate-binding protein PnrA-like HYG84_02510 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HYG84_02510 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HYG84_02510 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HYG84_02510 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HYG84_02525 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HYG84_02525 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HYG84_02540 PF00871 Acetokinase family HYG84_02545 PF01515 Phosphate acetyl/butaryl transferase HYG84_02550 PF00158 Sigma-54 interaction domain HYG84_02550 PF02954 Bacterial regulatory protein, Fis family HYG84_02550 PF00989 PAS fold HYG84_02560 PF02457 DisA bacterial checkpoint controller nucleotide-binding HYG84_02570 PF00202 Aminotransferase class-III HYG84_02575 PF00202 Aminotransferase class-III HYG84_02855 PF00462 Glutaredoxin HYG84_02865 PF04239 Protein of unknown function (DUF421) HYG84_02870 PF02673 Bacitracin resistance protein BacA HYG84_02875 PF00571 CBS domain HYG84_02875 PF03471 Transporter associated domain HYG84_02875 PF01595 Cyclin M transmembrane N-terminal domain HYG84_02880 PF01476 LysM domain HYG84_02880 PF03734 L,D-transpeptidase catalytic domain HYG84_02890 PF00005 ABC transporter HYG84_02890 PF03459 TOBE domain HYG84_02895 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_02905 PF03063 Prismane/CO dehydrogenase family HYG84_02915 PF01510 N-acetylmuramoyl-L-alanine amidase HYG84_02915 PF01471 Putative peptidoglycan binding domain HYG84_02945 PF04865 Baseplate J-like protein HYG84_02965 PF01476 LysM domain HYG84_02965 PF04972 BON domain HYG84_02975 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC HYG84_02980 PF09393 Phage tail tube protein HYG84_02985 PF04984 Phage tail sheath protein subtilisin-like domain HYG84_02985 PF17482 Phage tail sheath C-terminal domain HYG84_02985 PF17481 Phage tail sheath protein beta-sandwich domain HYG84_03010 PF07883 Cupin domain HYG84_03010 PF01381 Helix-turn-helix HYG84_03020 PF00689 Cation transporting ATPase, C-terminus HYG84_03020 PF00690 Cation transporter/ATPase, N-terminus HYG84_03065 PF11867 Domain of unknown function (DUF3387) HYG84_03065 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HYG84_03065 PF18766 SWI2/SNF2 ATPase HYG84_03080 PF12161 HsdM N-terminal domain HYG84_03080 PF02384 N-6 DNA Methylase HYG84_03090 PF00589 Phage integrase family HYG84_03090 PF02899 Phage integrase, N-terminal SAM-like domain HYG84_03095 PF00118 TCP-1/cpn60 chaperonin family HYG84_03100 PF00166 Chaperonin 10 Kd subunit HYG84_03105 PF04474 Protein of unknown function (DUF554) HYG84_03135 PF00005 ABC transporter HYG84_03140 PF04172 LrgB-like family HYG84_03145 PF03788 LrgA family HYG84_03150 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HYG84_03150 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HYG84_03160 PF12838 4Fe-4S dicluster domain HYG84_03175 PF02629 CoA binding domain HYG84_03175 PF06971 Putative DNA-binding protein N-terminus HYG84_03180 PF00005 ABC transporter HYG84_03180 PF16326 ABC transporter C-terminal domain HYG84_03180 PF12848 ABC transporter HYG84_03185 PF00814 Glycoprotease family HYG84_03195 PF00583 Acetyltransferase (GNAT) family HYG84_03200 PF00814 Glycoprotease family HYG84_03205 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HYG84_03210 PF12822 ECF transporter, substrate-specific component HYG84_03220 PF01979 Amidohydrolase family HYG84_03225 PF16921 Tex protein YqgF-like domain HYG84_03225 PF00575 S1 RNA binding domain HYG84_03225 PF17674 HHH domain HYG84_03225 PF09371 Tex-like protein N-terminal domain HYG84_03235 PF00700 Bacterial flagellin C-terminal helical region HYG84_03235 PF00669 Bacterial flagellin N-terminal helical region HYG84_03255 PF02743 Cache domain HYG84_03255 PF00672 HAMP domain HYG84_03255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_03265 PF02810 SEC-C motif HYG84_03265 PF07517 SecA DEAD-like domain HYG84_03265 PF01043 SecA preprotein cross-linking domain HYG84_03265 PF07516 SecA Wing and Scaffold domain HYG84_03275 PF01966 HD domain HYG84_03285 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HYG84_03285 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus HYG84_03295 PF02561 Flagellar protein FliS HYG84_03300 PF07196 Flagellin hook IN motif HYG84_03300 PF07195 Flagellar hook-associated protein 2 C-terminus HYG84_03300 PF02465 Flagellar hook-associated protein 2 N-terminus HYG84_03310 PF01063 Amino-transferase class IV HYG84_03315 PF18267 Rubredoxin NAD+ reductase C-terminal domain HYG84_03315 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HYG84_03315 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYG84_03315 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HYG84_03315 PF04324 BFD-like [2Fe-2S] binding domain HYG84_03320 PF02599 Global regulator protein family HYG84_03325 PF02623 FliW protein HYG84_03330 PF02954 Bacterial regulatory protein, Fis family HYG84_03330 PF13426 PAS domain HYG84_03330 PF00158 Sigma-54 interaction domain HYG84_03335 PF03553 Na+/H+ antiporter family HYG84_03355 PF02915 Rubrerythrin HYG84_03365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HYG84_03385 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HYG84_03385 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HYG84_03385 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HYG84_03395 PF00535 Glycosyl transferase family 2 HYG84_03395 PF13181 Tetratricopeptide repeat HYG84_03400 PF00700 Bacterial flagellin C-terminal helical region HYG84_03400 PF00669 Bacterial flagellin N-terminal helical region HYG84_03410 PF00460 Flagella basal body rod protein HYG84_03410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HYG84_03430 PF00156 Phosphoribosyl transferase domain HYG84_03435 PF13538 UvrD-like helicase C-terminal domain HYG84_03435 PF14490 Helix-hairpin-helix containing domain HYG84_03435 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain HYG84_03460 PF02773 S-adenosylmethionine synthetase, C-terminal domain HYG84_03460 PF02772 S-adenosylmethionine synthetase, central domain HYG84_03460 PF00438 S-adenosylmethionine synthetase, N-terminal domain HYG84_03475 PF06866 Protein of unknown function (DUF1256) HYG84_03495 PF06949 Protein of unknown function (DUF1292) HYG84_03500 PF00563 EAL domain HYG84_03500 PF00990 Diguanylate cyclase, GGDEF domain HYG84_03500 PF03707 Bacterial signalling protein N terminal repeat HYG84_03505 PF07977 FabA-like domain HYG84_03515 PF01569 PAP2 superfamily HYG84_03520 PF13416 Bacterial extracellular solute-binding protein HYG84_03525 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_03530 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_03535 PF00005 ABC transporter HYG84_03535 PF08402 TOBE domain HYG84_03540 PF07875 Coat F domain HYG84_03545 PF03949 Malic enzyme, NAD binding domain HYG84_03545 PF00390 Malic enzyme, N-terminal domain HYG84_03550 PF01979 Amidohydrolase family HYG84_03555 PF02056 Family 4 glycosyl hydrolase HYG84_03555 PF11975 Family 4 glycosyl hydrolase C-terminal domain HYG84_03560 PF01418 Helix-turn-helix domain, rpiR family HYG84_03560 PF01380 SIS domain HYG84_03565 PF00367 phosphotransferase system, EIIB HYG84_03565 PF02378 Phosphotransferase system, EIIC HYG84_03580 PF02447 GntP family permease HYG84_03585 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HYG84_03590 PF07005 Sugar-binding N-terminal domain HYG84_03590 PF17042 Nucleotide-binding C-terminal domain HYG84_03595 PF00455 DeoR C terminal sensor domain HYG84_03595 PF08220 DeoR-like helix-turn-helix domain HYG84_03600 PF01476 LysM domain HYG84_03600 PF03734 L,D-transpeptidase catalytic domain HYG84_03610 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HYG84_03610 PF10135 Rod binding protein HYG84_03630 PF02401 LytB protein HYG84_03675 PF13439 Glycosyltransferase Family 4 HYG84_03675 PF00534 Glycosyl transferases group 1 HYG84_03685 PF02397 Bacterial sugar transferase HYG84_03690 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HYG84_03695 PF02719 Polysaccharide biosynthesis protein HYG84_03700 PF06452 Carbohydrate family 9 binding domain-like HYG84_03700 PF02018 Carbohydrate binding domain HYG84_03700 PF00331 Glycosyl hydrolase family 10 HYG84_03700 PF00395 S-layer homology domain HYG84_03705 PF06452 Carbohydrate family 9 binding domain-like HYG84_03705 PF00395 S-layer homology domain HYG84_03705 PF02018 Carbohydrate binding domain HYG84_03705 PF00331 Glycosyl hydrolase family 10 HYG84_03715 PF13614 AAA domain HYG84_03720 PF02706 Chain length determinant protein HYG84_03720 PF13807 G-rich domain on putative tyrosine kinase HYG84_03730 PF00460 Flagella basal body rod protein HYG84_03730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HYG84_03735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HYG84_03735 PF00460 Flagella basal body rod protein HYG84_03745 PF12116 Stage III sporulation protein D HYG84_03755 PF08486 Stage II sporulation protein HYG84_03760 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HYG84_03780 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HYG84_03780 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HYG84_03785 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HYG84_03785 PF02874 ATP synthase alpha/beta family, beta-barrel domain HYG84_03790 PF00231 ATP synthase HYG84_03795 PF02874 ATP synthase alpha/beta family, beta-barrel domain HYG84_03795 PF00306 ATP synthase alpha/beta chain, C terminal domain HYG84_03795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HYG84_03800 PF00213 ATP synthase delta (OSCP) subunit HYG84_03805 PF00430 ATP synthase B/B' CF(0) HYG84_03810 PF00137 ATP synthase subunit C HYG84_03815 PF00119 ATP synthase A chain HYG84_03825 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter HYG84_03830 PF02350 UDP-N-acetylglucosamine 2-epimerase HYG84_03835 PF00953 Glycosyl transferase family 4 HYG84_03840 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HYG84_03850 PF02502 Ribose/Galactose Isomerase HYG84_03855 PF01451 Low molecular weight phosphotyrosine protein phosphatase HYG84_03860 PF00005 ABC transporter HYG84_03860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HYG84_03865 PF00005 ABC transporter HYG84_03865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HYG84_03870 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_03870 PF12911 N-terminal TM domain of oligopeptide transport permease C HYG84_03875 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_03880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HYG84_03885 PF04951 D-aminopeptidase HYG84_03890 PF03481 Putative GTP-binding controlling metal-binding HYG84_03890 PF01300 Telomere recombination HYG84_03895 PF00905 Penicillin binding protein transpeptidase domain HYG84_03900 PF01098 Cell cycle protein HYG84_03905 PF16697 Inner membrane component of T3SS, cytoplasmic domain HYG84_03910 PF02535 ZIP Zinc transporter HYG84_03915 PF03462 PCRF domain HYG84_03915 PF00472 RF-1 domain HYG84_03920 PF05175 Methyltransferase small domain HYG84_03920 PF17827 PrmC N-terminal domain HYG84_03925 PF07136 Protein of unknown function (DUF1385) HYG84_03930 PF02675 S-adenosylmethionine decarboxylase HYG84_03945 PF00005 ABC transporter HYG84_03955 PF00072 Response regulator receiver domain HYG84_03955 PF00196 Bacterial regulatory proteins, luxR family HYG84_03960 PF07730 Histidine kinase HYG84_03965 PF08264 Anticodon-binding domain of tRNA HYG84_03965 PF00133 tRNA synthetases class I (I, L, M and V) HYG84_03965 PF13603 Leucyl-tRNA synthetase, Domain 2 HYG84_03965 PF09334 tRNA synthetases class I (M) HYG84_03970 PF00265 Thymidine kinase HYG84_03975 PF01197 Ribosomal protein L31 HYG84_03980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HYG84_03980 PF07498 Rho termination factor, N-terminal domain HYG84_03980 PF07497 Rho termination factor, RNA-binding domain HYG84_03985 PF00005 ABC transporter HYG84_03990 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_03995 PF00497 Bacterial extracellular solute-binding proteins, family 3 HYG84_04000 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HYG84_04005 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HYG84_04010 PF06180 Cobalt chelatase (CbiK) HYG84_04015 PF00005 ABC transporter HYG84_04025 PF02553 Cobalt transport protein component CbiN HYG84_04030 PF01891 Cobalt uptake substrate-specific transmembrane region HYG84_04035 PF00923 Transaldolase/Fructose-6-phosphate aldolase HYG84_04040 PF05853 beta-keto acid cleavage enzyme HYG84_04045 PF03061 Thioesterase superfamily HYG84_04050 PF00209 Sodium:neurotransmitter symporter family HYG84_04055 PF00209 Sodium:neurotransmitter symporter family HYG84_04060 PF00963 Cohesin domain HYG84_04060 PF00395 S-layer homology domain HYG84_04065 PF00395 S-layer homology domain HYG84_04090 PF03023 Lipid II flippase MurJ HYG84_04095 PF00884 Sulfatase HYG84_04100 PF04055 Radical SAM superfamily HYG84_04100 PF02310 B12 binding domain HYG84_04105 PF17932 Tetracyclin repressor-like, C-terminal domain HYG84_04105 PF00440 Bacterial regulatory proteins, tetR family HYG84_04110 PF00873 AcrB/AcrD/AcrF family HYG84_04115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HYG84_04120 PF12704 MacB-like periplasmic core domain HYG84_04120 PF00005 ABC transporter HYG84_04120 PF02687 FtsX-like permease family HYG84_04130 PF00005 ABC transporter HYG84_04140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HYG84_04150 PF00005 ABC transporter HYG84_04155 PF00440 Bacterial regulatory proteins, tetR family HYG84_04175 PF00395 S-layer homology domain HYG84_04180 PF00395 S-layer homology domain HYG84_04185 PF07228 Stage II sporulation protein E (SpoIIE) HYG84_04190 PF02541 Ppx/GppA phosphatase family HYG84_04195 PF00575 S1 RNA binding domain HYG84_04210 PF07873 YabP family HYG84_04215 PF08486 Stage II sporulation protein HYG84_04220 PF01479 S4 domain HYG84_04225 PF00216 Bacterial DNA-binding protein HYG84_04230 PF03819 MazG nucleotide pyrophosphohydrolase domain HYG84_04230 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HYG84_04235 PF01943 Polysaccharide biosynthesis protein HYG84_04235 PF14667 Polysaccharide biosynthesis C-terminal domain HYG84_04240 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin HYG84_04240 PF15714 Stage V sporulation protein T C-terminal, transcription factor HYG84_04250 PF02559 CarD-like/TRCF domain HYG84_04250 PF00270 DEAD/DEAH box helicase HYG84_04250 PF00271 Helicase conserved C-terminal domain HYG84_04250 PF03461 TRCF domain HYG84_04250 PF17757 UvrB interaction domain HYG84_04260 PF01195 Peptidyl-tRNA hydrolase HYG84_04265 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HYG84_04265 PF14572 Phosphoribosyl synthetase-associated domain HYG84_04270 PF12804 MobA-like NTP transferase domain HYG84_04270 PF14602 Hexapeptide repeat of succinyl-transferase HYG84_04270 PF00132 Bacterial transferase hexapeptide (six repeats) HYG84_04275 PF04026 SpoVG HYG84_04280 PF00156 Phosphoribosyl transferase domain HYG84_04280 PF09182 Bacterial purine repressor, N-terminal HYG84_04285 PF02875 Mur ligase family, glutamate ligase domain HYG84_04285 PF08245 Mur ligase middle domain HYG84_04285 PF01225 Mur ligase family, catalytic domain HYG84_04295 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HYG84_04295 PF01276 Orn/Lys/Arg decarboxylase, major domain HYG84_04300 PF01546 Peptidase family M20/M25/M40 HYG84_04300 PF07687 Peptidase dimerisation domain HYG84_04305 PF03806 AbgT putative transporter family HYG84_04315 PF00398 Ribosomal RNA adenine dimethylase HYG84_04320 PF01751 Toprim domain HYG84_04320 PF13331 Domain of unknown function (DUF4093) HYG84_04325 PF03990 G5-linked-Ubiquitin-like domain HYG84_04325 PF07501 G5 domain HYG84_04325 PF06725 3D domain HYG84_04340 PF00005 ABC transporter HYG84_04345 PF00392 Bacterial regulatory proteins, gntR family HYG84_04350 PF00072 Response regulator receiver domain HYG84_04355 PF01026 TatD related DNase HYG84_04360 PF09334 tRNA synthetases class I (M) HYG84_04360 PF01588 Putative tRNA binding domain HYG84_04360 PF08264 Anticodon-binding domain of tRNA HYG84_04370 PF07670 Nucleoside recognition HYG84_04375 PF07670 Nucleoside recognition HYG84_04380 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HYG84_04380 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain HYG84_04380 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HYG84_04385 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin HYG84_04385 PF18277 AbrB C-terminal domain HYG84_04390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HYG84_04395 PF05175 Methyltransferase small domain HYG84_04405 PF12791 Anti-sigma factor N-terminus HYG84_04410 PF04542 Sigma-70 region 2 HYG84_04420 PF03553 Na+/H+ antiporter family HYG84_04425 PF01255 Putative undecaprenyl diphosphate synthase HYG84_04430 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HYG84_04430 PF01411 tRNA synthetases class II (A) HYG84_04430 PF02272 DHHA1 domain HYG84_04450 PF00664 ABC transporter transmembrane region HYG84_04450 PF00005 ABC transporter HYG84_04455 PF00005 ABC transporter HYG84_04455 PF00664 ABC transporter transmembrane region HYG84_04465 PF00005 ABC transporter HYG84_04500 PF02581 Thiamine monophosphate synthase HYG84_04505 PF02110 Hydroxyethylthiazole kinase family HYG84_04515 PF01259 SAICAR synthetase HYG84_04520 PF00488 MutS domain V HYG84_04520 PF01713 Smr domain HYG84_04525 PF00512 His Kinase A (phospho-acceptor) domain HYG84_04525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_04525 PF14827 Double sensory domain of two-component sensor kinase HYG84_04525 PF00672 HAMP domain HYG84_04525 PF13426 PAS domain HYG84_04530 PF00072 Response regulator receiver domain HYG84_04530 PF00486 Transcriptional regulatory protein, C terminal HYG84_04535 PF00209 Sodium:neurotransmitter symporter family HYG84_04550 PF03323 Bacillus/Clostridium GerA spore germination protein HYG84_04570 PF00578 AhpC/TSA family HYG84_04575 PF02683 Cytochrome C biogenesis protein transmembrane region HYG84_04585 PF00690 Cation transporter/ATPase, N-terminus HYG84_04585 PF00689 Cation transporting ATPase, C-terminus HYG84_04595 PF00440 Bacterial regulatory proteins, tetR family HYG84_04595 PF17922 Tetracyclin repressor-like, C-terminal domain HYG84_04600 PF01037 Lrp/AsnC ligand binding domain HYG84_04600 PF13404 AsnC-type helix-turn-helix domain HYG84_04605 PF00266 Aminotransferase class-V HYG84_04610 PF13280 WYL domain HYG84_04610 PF08279 HTH domain HYG84_04625 PF13419 Haloacid dehalogenase-like hydrolase HYG84_04650 PF00892 EamA-like transporter family HYG84_04655 PF12833 Helix-turn-helix domain HYG84_04655 PF02311 AraC-like ligand binding domain HYG84_04660 PF13443 Cro/C1-type HTH DNA-binding domain HYG84_04665 PF11188 Protein of unknown function (DUF2975) HYG84_04670 PF01381 Helix-turn-helix HYG84_04670 PF07883 Cupin domain HYG84_04675 PF01810 LysE type translocator HYG84_04685 PF00196 Bacterial regulatory proteins, luxR family HYG84_04685 PF13426 PAS domain HYG84_04690 PF00012 Hsp70 protein HYG84_04715 PF00664 ABC transporter transmembrane region HYG84_04715 PF00005 ABC transporter HYG84_04765 PF02590 Predicted SPOUT methyltransferase HYG84_04775 PF13180 PDZ domain HYG84_04780 PF00753 Metallo-beta-lactamase superfamily HYG84_04785 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HYG84_04805 PF00672 HAMP domain HYG84_04805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_04805 PF00512 His Kinase A (phospho-acceptor) domain HYG84_04805 PF13426 PAS domain HYG84_04810 PF00072 Response regulator receiver domain HYG84_04810 PF00486 Transcriptional regulatory protein, C terminal HYG84_04820 PF00082 Subtilase family HYG84_04825 PF01551 Peptidase family M23 HYG84_04830 PF11838 ERAP1-like C-terminal domain HYG84_04830 PF01433 Peptidase family M1 domain HYG84_04865 PF03796 DnaB-like helicase C terminal domain HYG84_04865 PF00772 DnaB-like helicase N terminal domain HYG84_04870 PF03948 Ribosomal protein L9, C-terminal domain HYG84_04870 PF01281 Ribosomal protein L9, N-terminal domain HYG84_04875 PF02272 DHHA1 domain HYG84_04875 PF01368 DHH family HYG84_04900 PF02562 PhoH-like protein HYG84_04900 PF13638 PIN domain HYG84_04905 PF01814 Hemerythrin HHE cation binding domain HYG84_04910 PF02915 Rubrerythrin HYG84_04920 PF07943 Penicillin-binding protein 5, C-terminal domain HYG84_04920 PF00768 D-alanyl-D-alanine carboxypeptidase HYG84_04925 PF00326 Prolyl oligopeptidase family HYG84_04925 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region HYG84_04940 PF00005 ABC transporter HYG84_04955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_04955 PF12729 Four helix bundle sensory module for signal transduction HYG84_04955 PF00672 HAMP domain HYG84_04960 PF01380 SIS domain HYG84_04985 PF14034 Sporulation protein YtrH HYG84_04990 PF00563 EAL domain HYG84_04990 PF00990 Diguanylate cyclase, GGDEF domain HYG84_05000 PF13382 Adenine deaminase C-terminal domain HYG84_05000 PF01979 Amidohydrolase family HYG84_05005 PF07687 Peptidase dimerisation domain HYG84_05005 PF01546 Peptidase family M20/M25/M40 HYG84_05010 PF01048 Phosphorylase superfamily HYG84_05015 PF02653 Branched-chain amino acid transport system / permease component HYG84_05025 PF00005 ABC transporter HYG84_05030 PF02608 ABC transporter substrate-binding protein PnrA-like HYG84_05035 PF00158 Sigma-54 interaction domain HYG84_05040 PF00583 Acetyltransferase (GNAT) family HYG84_05055 PF00202 Aminotransferase class-III HYG84_05060 PF00871 Acetokinase family HYG84_05065 PF01515 Phosphate acetyl/butaryl transferase HYG84_05070 PF13520 Amino acid permease HYG84_05075 PF00171 Aldehyde dehydrogenase family HYG84_05080 PF00939 Sodium:sulfate symporter transmembrane region HYG84_05085 PF00158 Sigma-54 interaction domain HYG84_05085 PF02954 Bacterial regulatory protein, Fis family HYG84_05085 PF00989 PAS fold HYG84_05095 PF00300 Histidine phosphatase superfamily (branch 1) HYG84_05100 PF13662 Toprim domain HYG84_05100 PF02132 RecR protein HYG84_05105 PF02575 YbaB/EbfC DNA-binding family HYG84_05110 PF12169 DNA polymerase III subunits gamma and tau domain III HYG84_05125 PF06866 Protein of unknown function (DUF1256) HYG84_05130 PF16736 Single Cache-like HYG84_05130 PF00989 PAS fold HYG84_05130 PF00512 His Kinase A (phospho-acceptor) domain HYG84_05130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_05135 PF00486 Transcriptional regulatory protein, C terminal HYG84_05135 PF00072 Response regulator receiver domain HYG84_05140 PF02557 D-alanyl-D-alanine carboxypeptidase HYG84_05145 PF01820 D-ala D-ala ligase N-terminus HYG84_05145 PF07478 D-ala D-ala ligase C-terminus HYG84_05150 PF04294 VanW like protein HYG84_05160 PF00781 Diacylglycerol kinase catalytic domain HYG84_05170 PF00266 Aminotransferase class-V HYG84_05175 PF02195 ParB-like nuclease domain HYG84_05175 PF17762 HTH domain found in ParB protein HYG84_05180 PF13614 AAA domain HYG84_05185 PF01169 Uncharacterized protein family UPF0016 HYG84_05190 PF02195 ParB-like nuclease domain HYG84_05190 PF17762 HTH domain found in ParB protein HYG84_05195 PF02527 rRNA small subunit methyltransferase G HYG84_05200 PF13932 GidA associated domain HYG84_05200 PF01134 Glucose inhibited division protein A HYG84_05205 PF12631 MnmE helical domain HYG84_05205 PF01926 50S ribosome-binding GTPase HYG84_05205 PF10396 GTP-binding protein TrmE N-terminus HYG84_05210 PF14804 Jag N-terminus HYG84_05210 PF01424 R3H domain HYG84_05215 PF02096 60Kd inner membrane protein HYG84_05220 PF01809 Putative membrane protein insertion efficiency factor HYG84_05225 PF00825 Ribonuclease P HYG84_05230 PF00468 Ribosomal protein L34 HYG84_05235 PF00308 Bacterial dnaA protein HYG84_05235 PF08299 Bacterial dnaA protein helix-turn-helix HYG84_05235 PF11638 DnaA N-terminal domain HYG84_05240 PF02768 DNA polymerase III beta subunit, C-terminal domain HYG84_05240 PF00712 DNA polymerase III beta subunit, N-terminal domain HYG84_05240 PF02767 DNA polymerase III beta subunit, central domain HYG84_05250 PF02463 RecF/RecN/SMC N terminal domain HYG84_05255 PF04025 Domain of unknown function (DUF370) HYG84_05260 PF01751 Toprim domain HYG84_05260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_05260 PF00986 DNA gyrase B subunit, carboxyl terminus HYG84_05260 PF00204 DNA gyrase B HYG84_05265 PF00521 DNA gyrase/topoisomerase IV, subunit A HYG84_05265 PF03989 DNA gyrase C-terminal domain, beta-propeller HYG84_05270 PF01740 STAS domain HYG84_05275 PF13581 Histidine kinase-like ATPase domain HYG84_05280 PF04542 Sigma-70 region 2 HYG84_05280 PF04539 Sigma-70 region 3 HYG84_05280 PF04545 Sigma-70, region 4 HYG84_05315 PF03167 Uracil DNA glycosylase superfamily HYG84_05330 PF02954 Bacterial regulatory protein, Fis family HYG84_05330 PF13426 PAS domain HYG84_05330 PF00158 Sigma-54 interaction domain HYG84_05335 PF01515 Phosphate acetyl/butaryl transferase HYG84_05350 PF00871 Acetokinase family HYG84_05370 PF02743 Cache domain HYG84_05370 PF00672 HAMP domain HYG84_05370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_05395 PF02829 3H domain HYG84_05395 PF08279 HTH domain HYG84_05410 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HYG84_05410 PF02403 Seryl-tRNA synthetase N-terminal domain HYG84_05420 PF00210 Ferritin-like domain HYG84_05435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_05435 PF02743 Cache domain HYG84_05435 PF00672 HAMP domain HYG84_05465 PF14437 MafB19-like deaminase HYG84_05480 PF03099 Biotin/lipoate A/B protein ligase family HYG84_05480 PF10437 Bacterial lipoate protein ligase C-terminus HYG84_05485 PF13472 GDSL-like Lipase/Acylhydrolase family HYG84_05490 PF02954 Bacterial regulatory protein, Fis family HYG84_05490 PF13426 PAS domain HYG84_05490 PF00158 Sigma-54 interaction domain HYG84_05495 PF00676 Dehydrogenase E1 component HYG84_05500 PF02780 Transketolase, C-terminal domain HYG84_05500 PF02779 Transketolase, pyrimidine binding domain HYG84_05510 PF03480 Bacterial extracellular solute-binding protein, family 7 HYG84_05520 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HYG84_05520 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HYG84_05525 PF02817 e3 binding domain HYG84_05525 PF00364 Biotin-requiring enzyme HYG84_05525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HYG84_05530 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYG84_05530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HYG84_05545 PF01206 Sulfurtransferase TusA HYG84_05555 PF00924 Mechanosensitive ion channel HYG84_05565 PF00155 Aminotransferase class I and II HYG84_05570 PF02954 Bacterial regulatory protein, Fis family HYG84_05570 PF00158 Sigma-54 interaction domain HYG84_05570 PF00989 PAS fold HYG84_05580 PF09338 Glycine/sarcosine/betaine reductase component B subunits HYG84_05595 PF09338 Glycine/sarcosine/betaine reductase component B subunits HYG84_05600 PF09338 Glycine/sarcosine/betaine reductase component B subunits HYG84_05615 PF01250 Ribosomal protein S6 HYG84_05620 PF00436 Single-strand binding protein family HYG84_05625 PF01084 Ribosomal protein S18 HYG84_05640 PF01386 Ribosomal L25p family HYG84_05640 PF14693 Ribosomal protein TL5, C-terminal domain HYG84_05645 PF01386 Ribosomal L25p family HYG84_05645 PF14693 Ribosomal protein TL5, C-terminal domain HYG84_05665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_05665 PF00672 HAMP domain HYG84_05665 PF02743 Cache domain HYG84_05670 PF02583 Metal-sensitive transcriptional repressor HYG84_05675 PF00403 Heavy-metal-associated domain HYG84_05690 PF04203 Sortase domain HYG84_05740 PF00805 Pentapeptide repeats (8 copies) HYG84_05745 PF02618 YceG-like family HYG84_05755 PF00486 Transcriptional regulatory protein, C terminal HYG84_05755 PF00072 Response regulator receiver domain HYG84_05760 PF00512 His Kinase A (phospho-acceptor) domain HYG84_05760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_05765 PF00150 Cellulase (glycosyl hydrolase family 5) HYG84_05765 PF02156 Glycosyl hydrolase family 26 HYG84_05765 PF00404 Dockerin type I domain HYG84_05765 PF03425 Carbohydrate binding domain (family 11) HYG84_05775 PF03062 MBOAT, membrane-bound O-acyltransferase family HYG84_05780 PF09335 SNARE associated Golgi protein HYG84_05800 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HYG84_05800 PF01276 Orn/Lys/Arg decarboxylase, major domain HYG84_05805 PF02223 Thymidylate kinase HYG84_05810 PF06153 Cyclic-di-AMP receptor HYG84_05815 PF09115 DNA polymerase III, delta subunit, C terminal HYG84_05820 PF04468 PSP1 C-terminal conserved region HYG84_05825 PF12838 4Fe-4S dicluster domain HYG84_05830 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HYG84_05830 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYG84_05835 PF01571 Aminomethyltransferase folate-binding domain HYG84_05835 PF08669 Glycine cleavage T-protein C-terminal barrel domain HYG84_05840 PF01597 Glycine cleavage H-protein HYG84_05845 PF02347 Glycine cleavage system P-protein HYG84_05850 PF02347 Glycine cleavage system P-protein HYG84_05860 PF02954 Bacterial regulatory protein, Fis family HYG84_05860 PF00158 Sigma-54 interaction domain HYG84_05860 PF13426 PAS domain HYG84_05865 PF00885 6,7-dimethyl-8-ribityllumazine synthase HYG84_05870 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HYG84_05870 PF00925 GTP cyclohydrolase II HYG84_05875 PF00677 Lumazine binding domain HYG84_05880 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HYG84_05880 PF01872 RibD C-terminal domain HYG84_05890 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HYG84_05895 PF00871 Acetokinase family HYG84_05900 PF00155 Aminotransferase class I and II HYG84_05910 PF00005 ABC transporter HYG84_05915 PF12704 MacB-like periplasmic core domain HYG84_05915 PF02687 FtsX-like permease family HYG84_05920 PF00512 His Kinase A (phospho-acceptor) domain HYG84_05920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_05920 PF00672 HAMP domain HYG84_05925 PF00486 Transcriptional regulatory protein, C terminal HYG84_05925 PF00072 Response regulator receiver domain HYG84_05930 PF00155 Aminotransferase class I and II HYG84_05960 PF00072 Response regulator receiver domain HYG84_05960 PF00486 Transcriptional regulatory protein, C terminal HYG84_05965 PF16736 Single Cache-like HYG84_05965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_05965 PF00512 His Kinase A (phospho-acceptor) domain HYG84_05965 PF00989 PAS fold HYG84_05980 PF00005 ABC transporter HYG84_05980 PF12848 ABC transporter HYG84_05985 PF00480 ROK family HYG84_06020 PF13411 MerR HTH family regulatory protein HYG84_06020 PF07739 TipAS antibiotic-recognition domain HYG84_06040 PF08241 Methyltransferase domain HYG84_06060 PF06445 GyrI-like small molecule binding domain HYG84_06060 PF12833 Helix-turn-helix domain HYG84_06070 PF08281 Sigma-70, region 4 HYG84_06070 PF04542 Sigma-70 region 2 HYG84_06075 PF04055 Radical SAM superfamily HYG84_06075 PF06463 Molybdenum Cofactor Synthesis C HYG84_06080 PF00171 Aldehyde dehydrogenase family HYG84_06085 PF00696 Amino acid kinase family HYG84_06090 PF03807 NADP oxidoreductase coenzyme F420-dependent HYG84_06090 PF14748 Pyrroline-5-carboxylate reductase dimerisation HYG84_06095 PF10502 Signal peptidase, peptidase S26 HYG84_06135 PF00679 Elongation factor G C-terminus HYG84_06135 PF14492 Elongation Factor G, domain II HYG84_06135 PF03764 Elongation factor G, domain IV HYG84_06135 PF00009 Elongation factor Tu GTP binding domain HYG84_06140 PF12848 ABC transporter HYG84_06140 PF16326 ABC transporter C-terminal domain HYG84_06140 PF00005 ABC transporter HYG84_06145 PF00005 ABC transporter HYG84_06155 PF10431 C-terminal, D2-small domain, of ClpB protein HYG84_06155 PF02861 Clp amino terminal domain, pathogenicity island component HYG84_06155 PF00004 ATPase family associated with various cellular activities (AAA) HYG84_06155 PF07724 AAA domain (Cdc48 subfamily) HYG84_06155 PF17871 AAA lid domain HYG84_06175 PF01520 N-acetylmuramoyl-L-alanine amidase HYG84_06180 PF00258 Flavodoxin HYG84_06180 PF00301 Rubredoxin HYG84_06180 PF00753 Metallo-beta-lactamase superfamily HYG84_06210 PF00672 HAMP domain HYG84_06210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_06210 PF00512 His Kinase A (phospho-acceptor) domain HYG84_06215 PF00512 His Kinase A (phospho-acceptor) domain HYG84_06215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_06215 PF18719 ArlS sensor domain HYG84_06270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HYG84_06275 PF00005 ABC transporter HYG84_06280 PF02687 FtsX-like permease family HYG84_06280 PF12704 MacB-like periplasmic core domain HYG84_06300 PF00378 Enoyl-CoA hydratase/isomerase HYG84_06310 PF01144 Coenzyme A transferase HYG84_06315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HYG84_06315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HYG84_06315 PF02770 Acyl-CoA dehydrogenase, middle domain HYG84_06320 PF01012 Electron transfer flavoprotein domain HYG84_06325 PF01012 Electron transfer flavoprotein domain HYG84_06325 PF00766 Electron transfer flavoprotein FAD-binding domain HYG84_06325 PF13237 4Fe-4S dicluster domain HYG84_06330 PF00989 PAS fold HYG84_06330 PF02954 Bacterial regulatory protein, Fis family HYG84_06330 PF00158 Sigma-54 interaction domain HYG84_06335 PF00690 Cation transporter/ATPase, N-terminus HYG84_06335 PF00689 Cation transporting ATPase, C-terminus HYG84_06345 PF03062 MBOAT, membrane-bound O-acyltransferase family HYG84_06360 PF01266 FAD dependent oxidoreductase HYG84_06360 PF00355 Rieske [2Fe-2S] domain HYG84_06390 PF04542 Sigma-70 region 2 HYG84_06390 PF04545 Sigma-70, region 4 HYG84_06390 PF04539 Sigma-70 region 3 HYG84_06395 PF00749 tRNA synthetases class I (E and Q), catalytic domain HYG84_06395 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HYG84_06405 PF01554 MatE HYG84_06410 PF00890 FAD binding domain HYG84_06410 PF04205 FMN-binding domain HYG84_06415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_06415 PF00672 HAMP domain HYG84_06415 PF06580 Histidine kinase HYG84_06415 PF02743 Cache domain HYG84_06420 PF04397 LytTr DNA-binding domain HYG84_06420 PF00072 Response regulator receiver domain HYG84_06430 PF01551 Peptidase family M23 HYG84_06435 PF00497 Bacterial extracellular solute-binding proteins, family 3 HYG84_06440 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_06445 PF00005 ABC transporter HYG84_06450 PF03591 AzlC protein HYG84_06455 PF05437 Branched-chain amino acid transport protein (AzlD) HYG84_06460 PF02645 Uncharacterised protein, DegV family COG1307 HYG84_06475 PF01032 FecCD transport family HYG84_06480 PF01032 FecCD transport family HYG84_06485 PF00005 ABC transporter HYG84_06490 PF12833 Helix-turn-helix domain HYG84_06490 PF10114 Sensory domain found in PocR HYG84_06495 PF07694 5TMR of 5TMR-LYT HYG84_06495 PF06580 Histidine kinase HYG84_06500 PF00465 Iron-containing alcohol dehydrogenase HYG84_06535 PF00936 BMC domain HYG84_06540 PF00936 BMC domain HYG84_06545 PF00171 Aldehyde dehydrogenase family HYG84_06545 PF00465 Iron-containing alcohol dehydrogenase HYG84_06550 PF01228 Glycine radical HYG84_06550 PF02901 Pyruvate formate lyase-like HYG84_06555 PF13187 4Fe-4S dicluster domain HYG84_06555 PF04055 Radical SAM superfamily HYG84_06560 PF00936 BMC domain HYG84_06565 PF10662 Ethanolamine utilisation - propanediol utilisation HYG84_06585 PF03319 Ethanolamine utilisation protein EutN/carboxysome HYG84_06590 PF10531 SLBB domain HYG84_06590 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HYG84_06590 PF13237 4Fe-4S dicluster domain HYG84_06590 PF13375 RnfC Barrel sandwich hybrid domain HYG84_06600 PF06249 Ethanolamine utilisation protein EutQ HYG84_06605 PF00936 BMC domain HYG84_06610 PF00171 Aldehyde dehydrogenase family HYG84_06610 PF00465 Iron-containing alcohol dehydrogenase HYG84_06615 PF06130 Phosphate propanoyltransferase HYG84_06620 PF00936 BMC domain HYG84_06625 PF02743 Cache domain HYG84_06625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_06625 PF00672 HAMP domain HYG84_06635 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HYG84_06650 PF00005 ABC transporter HYG84_06655 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_06690 PF01568 Molydopterin dinucleotide binding domain HYG84_06690 PF00384 Molybdopterin oxidoreductase HYG84_06700 PF01432 Peptidase family M3 HYG84_06700 PF08439 Oligopeptidase F HYG84_06705 PF03553 Na+/H+ antiporter family HYG84_06710 PF00072 Response regulator receiver domain HYG84_06710 PF00486 Transcriptional regulatory protein, C terminal HYG84_06715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_06715 PF00512 His Kinase A (phospho-acceptor) domain HYG84_06720 PF03590 Aspartate-ammonia ligase HYG84_06725 PF00664 ABC transporter transmembrane region HYG84_06725 PF00005 ABC transporter HYG84_06745 PF00989 PAS fold HYG84_06745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_06745 PF17203 Single cache domain 3 HYG84_06745 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HYG84_06750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HYG84_06750 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HYG84_06750 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HYG84_06750 PF10371 Domain of unknown function HYG84_06750 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HYG84_06755 PF13396 Phospholipase_D-nuclease N-terminal HYG84_06755 PF13091 PLD-like domain HYG84_06760 PF01880 Desulfoferrodoxin HYG84_06770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_06770 PF02743 Cache domain HYG84_06770 PF00672 HAMP domain HYG84_06775 PF07516 SecA Wing and Scaffold domain HYG84_06775 PF02810 SEC-C motif HYG84_06775 PF01043 SecA preprotein cross-linking domain HYG84_06775 PF07517 SecA DEAD-like domain HYG84_06785 PF01554 MatE HYG84_06805 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HYG84_06805 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HYG84_06810 PF00672 HAMP domain HYG84_06810 PF02743 Cache domain HYG84_06810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_06835 PF07670 Nucleoside recognition HYG84_06835 PF02421 Ferrous iron transport protein B HYG84_06835 PF17910 FeoB cytosolic helical domain HYG84_06835 PF07664 Ferrous iron transport protein B C terminus HYG84_06845 PF01594 AI-2E family transporter HYG84_06855 PF02803 Thiolase, C-terminal domain HYG84_06855 PF00108 Thiolase, N-terminal domain HYG84_06860 PF00892 EamA-like transporter family HYG84_06865 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase HYG84_06865 PF04101 Glycosyltransferase family 28 C-terminal domain HYG84_06885 PF07883 Cupin domain HYG84_06885 PF01381 Helix-turn-helix HYG84_06890 PF00892 EamA-like transporter family HYG84_06895 PF12804 MobA-like NTP transferase domain HYG84_06900 PF00111 2Fe-2S iron-sulfur cluster binding domain HYG84_06900 PF01799 [2Fe-2S] binding domain HYG84_06910 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HYG84_06910 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HYG84_06920 PF00005 ABC transporter HYG84_06935 PF12849 PBP superfamily domain HYG84_06940 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_06945 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_06950 PF00005 ABC transporter HYG84_06955 PF01895 PhoU domain HYG84_06965 PF00005 ABC transporter HYG84_06970 PF01458 Uncharacterized protein family (UPF0051) HYG84_06975 PF01458 Uncharacterized protein family (UPF0051) HYG84_06980 PF00266 Aminotransferase class-V HYG84_06985 PF01592 NifU-like N terminal domain HYG84_06990 PF00890 FAD binding domain HYG84_06990 PF03358 NADPH-dependent FMN reductase HYG84_06990 PF04205 FMN-binding domain HYG84_06995 PF03553 Na+/H+ antiporter family HYG84_07005 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HYG84_07005 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HYG84_07005 PF00037 4Fe-4S binding domain HYG84_07010 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HYG84_07010 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HYG84_07010 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYG84_07015 PF00883 Cytosol aminopeptidase family, catalytic domain HYG84_07015 PF02789 Cytosol aminopeptidase family, N-terminal domain HYG84_07030 PF08486 Stage II sporulation protein HYG84_07035 PF06257 Biofilm formation stimulator VEG HYG84_07045 PF01546 Peptidase family M20/M25/M40 HYG84_07050 PF01541 GIY-YIG catalytic domain HYG84_07070 PF00288 GHMP kinases N terminal domain HYG84_07070 PF08544 GHMP kinases C terminal HYG84_07075 PF00392 Bacterial regulatory proteins, gntR family HYG84_07075 PF07729 FCD domain HYG84_07100 PF03323 Bacillus/Clostridium GerA spore germination protein HYG84_07105 PF03845 Spore germination protein HYG84_07110 PF05504 Spore germination B3/ GerAC like, C-terminal HYG84_07115 PF09551 Stage II sporulation protein R (spore_II_R) HYG84_07125 PF05684 Protein of unknown function (DUF819) HYG84_07130 PF01244 Membrane dipeptidase (Peptidase family M19) HYG84_07135 PF01820 D-ala D-ala ligase N-terminus HYG84_07135 PF07478 D-ala D-ala ligase C-terminus HYG84_07155 PF00672 HAMP domain HYG84_07155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_07155 PF02743 Cache domain HYG84_07160 PF01554 MatE HYG84_07165 PF12683 Protein of unknown function (DUF3798) HYG84_07170 PF00005 ABC transporter HYG84_07180 PF02653 Branched-chain amino acid transport system / permease component HYG84_07185 PF04993 TfoX N-terminal domain HYG84_07195 PF08279 HTH domain HYG84_07195 PF13280 WYL domain HYG84_07210 PF07687 Peptidase dimerisation domain HYG84_07210 PF01546 Peptidase family M20/M25/M40 HYG84_07215 PF07687 Peptidase dimerisation domain HYG84_07215 PF01546 Peptidase family M20/M25/M40 HYG84_07220 PF17853 GGDEF-like domain HYG84_07220 PF13556 PucR C-terminal helix-turn-helix domain HYG84_07220 PF07905 Purine catabolism regulatory protein-like family HYG84_07225 PF00578 AhpC/TSA family HYG84_07230 PF00583 Acetyltransferase (GNAT) family HYG84_07230 PF14268 YoaP-like HYG84_07240 PF01820 D-ala D-ala ligase N-terminus HYG84_07240 PF07478 D-ala D-ala ligase C-terminus HYG84_07245 PF08245 Mur ligase middle domain HYG84_07245 PF02875 Mur ligase family, glutamate ligase domain HYG84_07245 PF01225 Mur ligase family, catalytic domain HYG84_07250 PF01177 Asp/Glu/Hydantoin racemase HYG84_07255 PF00375 Sodium:dicarboxylate symporter family HYG84_07270 PF02743 Cache domain HYG84_07270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_07270 PF00672 HAMP domain HYG84_07275 PF07687 Peptidase dimerisation domain HYG84_07275 PF01546 Peptidase family M20/M25/M40 HYG84_07280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_07280 PF00672 HAMP domain HYG84_07280 PF00512 His Kinase A (phospho-acceptor) domain HYG84_07285 PF00072 Response regulator receiver domain HYG84_07285 PF00486 Transcriptional regulatory protein, C terminal HYG84_07295 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HYG84_07315 PF00999 Sodium/hydrogen exchanger family HYG84_07315 PF00582 Universal stress protein family HYG84_07325 PF01385 Probable transposase HYG84_07325 PF07282 Putative transposase DNA-binding domain HYG84_07325 PF12323 Helix-turn-helix domain HYG84_07330 PF03692 Putative zinc- or iron-chelating domain HYG84_07365 PF00072 Response regulator receiver domain HYG84_07365 PF00486 Transcriptional regulatory protein, C terminal HYG84_07370 PF00512 His Kinase A (phospho-acceptor) domain HYG84_07370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_07380 PF02142 MGS-like domain HYG84_07390 PF01554 MatE HYG84_07395 PF00291 Pyridoxal-phosphate dependent enzyme HYG84_07405 PF01541 GIY-YIG catalytic domain HYG84_07405 PF12826 Helix-hairpin-helix motif HYG84_07405 PF02151 UvrB/uvrC motif HYG84_07405 PF08459 UvrC Helix-hairpin-helix N-terminal HYG84_07415 PF04199 Putative cyclase HYG84_07420 PF07837 Formiminotransferase domain, N-terminal subdomain HYG84_07420 PF02971 Formiminotransferase domain HYG84_07425 PF01979 Amidohydrolase family HYG84_07430 PF00857 Isochorismatase family HYG84_07435 PF02441 Flavoprotein HYG84_07440 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HYG84_07445 PF00936 BMC domain HYG84_07455 PF00936 BMC domain HYG84_07460 PF00936 BMC domain HYG84_07475 PF13382 Adenine deaminase C-terminal domain HYG84_07475 PF01979 Amidohydrolase family HYG84_07480 PF00860 Permease family HYG84_07485 PF01979 Amidohydrolase family HYG84_07490 PF00941 FAD binding domain in molybdopterin dehydrogenase HYG84_07490 PF03450 CO dehydrogenase flavoprotein C-terminal domain HYG84_07495 PF01799 [2Fe-2S] binding domain HYG84_07495 PF00111 2Fe-2S iron-sulfur cluster binding domain HYG84_07500 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HYG84_07500 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HYG84_07505 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HYG84_07510 PF01979 Amidohydrolase family HYG84_07510 PF13382 Adenine deaminase C-terminal domain HYG84_07520 PF02348 Cytidylyltransferase HYG84_07525 PF02743 Cache domain HYG84_07525 PF00672 HAMP domain HYG84_07525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_07530 PF03006 Haemolysin-III related HYG84_07535 PF17099 Tryptophan transporter TrpP HYG84_07540 PF00364 Biotin-requiring enzyme HYG84_07545 PF00289 Biotin carboxylase, N-terminal domain HYG84_07545 PF02785 Biotin carboxylase C-terminal domain HYG84_07545 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HYG84_07550 PF01039 Carboxyl transferase domain HYG84_07555 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HYG84_07560 PF13411 MerR HTH family regulatory protein HYG84_07565 PF00005 ABC transporter HYG84_07575 PF00486 Transcriptional regulatory protein, C terminal HYG84_07575 PF00072 Response regulator receiver domain HYG84_07580 PF00072 Response regulator receiver domain HYG84_07580 PF08448 PAS fold HYG84_07580 PF00512 His Kinase A (phospho-acceptor) domain HYG84_07580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_07580 PF13188 PAS domain HYG84_07585 PF00890 FAD binding domain HYG84_07585 PF14537 Cytochrome c3 HYG84_07595 PF12833 Helix-turn-helix domain HYG84_07595 PF00072 Response regulator receiver domain HYG84_07600 PF00672 HAMP domain HYG84_07600 PF02743 Cache domain HYG84_07600 PF06580 Histidine kinase HYG84_07600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_07605 PF00890 FAD binding domain HYG84_07605 PF04205 FMN-binding domain HYG84_07610 PF14537 Cytochrome c3 HYG84_07610 PF00890 FAD binding domain HYG84_07615 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HYG84_07630 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HYG84_07630 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HYG84_07635 PF17676 LD-carboxypeptidase C-terminal domain HYG84_07635 PF02016 LD-carboxypeptidase N-terminal domain HYG84_07640 PF01546 Peptidase family M20/M25/M40 HYG84_07640 PF07687 Peptidase dimerisation domain HYG84_07655 PF00581 Rhodanese-like domain HYG84_07660 PF13686 DsrE/DsrF/DrsH-like family HYG84_07665 PF00266 Aminotransferase class-V HYG84_07675 PF01063 Amino-transferase class IV HYG84_07685 PF00704 Glycosyl hydrolases family 18 HYG84_07685 PF01476 LysM domain HYG84_07690 PF02926 THUMP domain HYG84_07690 PF01170 Putative RNA methylase family UPF0020 HYG84_07705 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HYG84_07705 PF13378 Enolase C-terminal domain-like HYG84_07715 PF02954 Bacterial regulatory protein, Fis family HYG84_07715 PF13426 PAS domain HYG84_07715 PF00158 Sigma-54 interaction domain HYG84_07725 PF04055 Radical SAM superfamily HYG84_07725 PF12544 Lysine-2,3-aminomutase HYG84_07735 PF01713 Smr domain HYG84_07735 PF00488 MutS domain V HYG84_07740 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit HYG84_07745 PF02310 B12 binding domain HYG84_07745 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase HYG84_07760 PF04397 LytTr DNA-binding domain HYG84_07760 PF00072 Response regulator receiver domain HYG84_07785 PF00092 von Willebrand factor type A domain HYG84_07790 PF00069 Protein kinase domain HYG84_07790 PF03793 PASTA domain HYG84_07795 PF01171 PP-loop family HYG84_07795 PF11734 TilS substrate C-terminal domain HYG84_07800 PF01434 Peptidase family M41 HYG84_07800 PF00004 ATPase family associated with various cellular activities (AAA) HYG84_07800 PF17862 AAA+ lid domain HYG84_07805 PF02310 B12 binding domain HYG84_07805 PF01642 Methylmalonyl-CoA mutase HYG84_07810 PF02310 B12 binding domain HYG84_07810 PF01642 Methylmalonyl-CoA mutase HYG84_07825 PF01039 Carboxyl transferase domain HYG84_07835 PF00364 Biotin-requiring enzyme HYG84_07840 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HYG84_07845 PF02237 Biotin protein ligase C terminal domain HYG84_07845 PF03099 Biotin/lipoate A/B protein ligase family HYG84_07845 PF08279 HTH domain HYG84_07855 PF03309 Type III pantothenate kinase HYG84_07860 PF01207 Dihydrouridine synthase (Dus) HYG84_07870 PF01272 Transcription elongation factor, GreA/GreB, C-term HYG84_07870 PF03449 Transcription elongation factor, N-terminal HYG84_07875 PF01336 OB-fold nucleic acid binding domain HYG84_07875 PF00152 tRNA synthetases class II (D, K and N) HYG84_07900 PF02867 Ribonucleotide reductase, barrel domain HYG84_07900 PF17975 Ribonucleotide reductase alpha domain HYG84_07905 PF00009 Elongation factor Tu GTP binding domain HYG84_07905 PF03764 Elongation factor G, domain IV HYG84_07905 PF14492 Elongation Factor G, domain II HYG84_07905 PF00679 Elongation factor G C-terminus HYG84_07905 PF03144 Elongation factor Tu domain 2 HYG84_07910 PF02151 UvrB/uvrC motif HYG84_07915 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain HYG84_07920 PF00004 ATPase family associated with various cellular activities (AAA) HYG84_07920 PF07724 AAA domain (Cdc48 subfamily) HYG84_07920 PF17871 AAA lid domain HYG84_07920 PF02861 Clp amino terminal domain, pathogenicity island component HYG84_07920 PF10431 C-terminal, D2-small domain, of ClpB protein HYG84_07930 PF18073 Rubredoxin metal binding domain HYG84_07935 PF02457 DisA bacterial checkpoint controller nucleotide-binding HYG84_07935 PF10635 DisA bacterial checkpoint controller linker region HYG84_07945 PF02559 CarD-like/TRCF domain HYG84_07955 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HYG84_07960 PF02542 YgbB family HYG84_07965 PF00005 ABC transporter HYG84_07970 PF12679 ABC-2 family transporter protein HYG84_07975 PF09180 Prolyl-tRNA synthetase, C-terminal HYG84_07975 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HYG84_07975 PF03129 Anticodon binding domain HYG84_07985 PF00072 Response regulator receiver domain HYG84_07985 PF00486 Transcriptional regulatory protein, C terminal HYG84_07990 PF00512 His Kinase A (phospho-acceptor) domain HYG84_07990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_07995 PF06207 Protein of unknown function (DUF1002) HYG84_08000 PF00749 tRNA synthetases class I (E and Q), catalytic domain HYG84_08005 PF06426 Serine acetyltransferase, N-terminal HYG84_08005 PF00132 Bacterial transferase hexapeptide (six repeats) HYG84_08010 PF09190 DALR domain HYG84_08010 PF01406 tRNA synthetases class I (C) catalytic domain HYG84_08015 PF00636 Ribonuclease III domain HYG84_08025 PF02511 Thymidylate synthase complementing protein HYG84_08030 PF00588 SpoU rRNA Methylase family HYG84_08030 PF08032 RNA 2'-O ribose methyltransferase substrate binding HYG84_08035 PF05991 YacP-like NYN domain HYG84_08040 PF04542 Sigma-70 region 2 HYG84_08040 PF08281 Sigma-70, region 4 HYG84_08045 PF00009 Elongation factor Tu GTP binding domain HYG84_08045 PF03143 Elongation factor Tu C-terminal domain HYG84_08045 PF03144 Elongation factor Tu domain 2 HYG84_08050 PF00471 Ribosomal protein L33 HYG84_08060 PF00467 KOW motif HYG84_08060 PF02357 Transcription termination factor nusG HYG84_08065 PF00298 Ribosomal protein L11, RNA binding domain HYG84_08065 PF03946 Ribosomal protein L11, N-terminal domain HYG84_08070 PF00687 Ribosomal protein L1p/L10e family HYG84_08075 PF00466 Ribosomal protein L10 HYG84_08080 PF00542 Ribosomal protein L7/L12 C-terminal domain HYG84_08080 PF16320 Ribosomal protein L7/L12 dimerisation domain HYG84_08085 PF04560 RNA polymerase Rpb2, domain 7 HYG84_08085 PF00562 RNA polymerase Rpb2, domain 6 HYG84_08085 PF04563 RNA polymerase beta subunit HYG84_08085 PF04565 RNA polymerase Rpb2, domain 3 HYG84_08085 PF04561 RNA polymerase Rpb2, domain 2 HYG84_08085 PF10385 RNA polymerase beta subunit external 1 domain HYG84_08090 PF04998 RNA polymerase Rpb1, domain 5 HYG84_08090 PF04983 RNA polymerase Rpb1, domain 3 HYG84_08090 PF04997 RNA polymerase Rpb1, domain 1 HYG84_08090 PF00623 RNA polymerase Rpb1, domain 2 HYG84_08090 PF05000 RNA polymerase Rpb1, domain 4 HYG84_08095 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family HYG84_08100 PF00164 Ribosomal protein S12/S23 HYG84_08105 PF00177 Ribosomal protein S7p/S5e HYG84_08110 PF00679 Elongation factor G C-terminus HYG84_08110 PF14492 Elongation Factor G, domain II HYG84_08110 PF03764 Elongation factor G, domain IV HYG84_08110 PF00009 Elongation factor Tu GTP binding domain HYG84_08110 PF03144 Elongation factor Tu domain 2 HYG84_08115 PF00009 Elongation factor Tu GTP binding domain HYG84_08115 PF03143 Elongation factor Tu C-terminal domain HYG84_08115 PF03144 Elongation factor Tu domain 2 HYG84_08120 PF00338 Ribosomal protein S10p/S20e HYG84_08125 PF00297 Ribosomal protein L3 HYG84_08130 PF00573 Ribosomal protein L4/L1 family HYG84_08135 PF00276 Ribosomal protein L23 HYG84_08140 PF03947 Ribosomal Proteins L2, C-terminal domain HYG84_08140 PF00181 Ribosomal Proteins L2, RNA binding domain HYG84_08145 PF00203 Ribosomal protein S19 HYG84_08150 PF00237 Ribosomal protein L22p/L17e HYG84_08155 PF07650 KH domain HYG84_08155 PF00189 Ribosomal protein S3, C-terminal domain HYG84_08160 PF00252 Ribosomal protein L16p/L10e HYG84_08165 PF00831 Ribosomal L29 protein HYG84_08170 PF00366 Ribosomal protein S17 HYG84_08175 PF00238 Ribosomal protein L14p/L23e HYG84_08180 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HYG84_08180 PF00467 KOW motif HYG84_08185 PF00281 Ribosomal protein L5 HYG84_08185 PF00673 ribosomal L5P family C-terminus HYG84_08190 PF00253 Ribosomal protein S14p/S29e HYG84_08195 PF00410 Ribosomal protein S8 HYG84_08200 PF00347 Ribosomal protein L6 HYG84_08205 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HYG84_08210 PF00333 Ribosomal protein S5, N-terminal domain HYG84_08210 PF03719 Ribosomal protein S5, C-terminal domain HYG84_08215 PF00327 Ribosomal protein L30p/L7e HYG84_08220 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HYG84_08225 PF00344 SecY translocase HYG84_08230 PF05191 Adenylate kinase, active site lid HYG84_08235 PF00557 Metallopeptidase family M24 HYG84_08245 PF01176 Translation initiation factor 1A / IF-1 HYG84_08250 PF00444 Ribosomal protein L36 HYG84_08255 PF00416 Ribosomal protein S13/S18 HYG84_08260 PF00411 Ribosomal protein S11 HYG84_08265 PF00163 Ribosomal protein S4/S9 N-terminal domain HYG84_08265 PF01479 S4 domain HYG84_08270 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HYG84_08270 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HYG84_08270 PF01000 RNA polymerase Rpb3/RpoA insert domain HYG84_08275 PF01196 Ribosomal protein L17 HYG84_08280 PF00005 ABC transporter HYG84_08285 PF00005 ABC transporter HYG84_08290 PF02361 Cobalt transport protein HYG84_08295 PF01416 tRNA pseudouridine synthase HYG84_08300 PF00572 Ribosomal protein L13 HYG84_08305 PF00380 Ribosomal protein S9/S16 HYG84_08320 PF01520 N-acetylmuramoyl-L-alanine amidase HYG84_08335 PF08239 Bacterial SH3 domain HYG84_08335 PF01520 N-acetylmuramoyl-L-alanine amidase HYG84_08345 PF10609 NUBPL iron-transfer P-loop NTPase HYG84_08355 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) HYG84_08365 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HYG84_08365 PF00384 Molybdopterin oxidoreductase HYG84_08365 PF01568 Molydopterin dinucleotide binding domain HYG84_08370 PF13247 4Fe-4S dicluster domain HYG84_08370 PF12800 4Fe-4S binding domain HYG84_08380 PF07875 Coat F domain HYG84_08395 PF00478 IMP dehydrogenase / GMP reductase domain HYG84_08395 PF00571 CBS domain HYG84_08400 PF00117 Glutamine amidotransferase class-I HYG84_08400 PF00958 GMP synthase C terminal domain HYG84_08405 PF13443 Cro/C1-type HTH DNA-binding domain HYG84_08410 PF00860 Permease family HYG84_08415 PF02222 ATP-grasp domain HYG84_08415 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HYG84_08420 PF00731 AIR carboxylase HYG84_08425 PF00586 AIR synthase related protein, N-terminal domain HYG84_08425 PF02769 AIR synthase related protein, C-terminal domain HYG84_08425 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HYG84_08430 PF00156 Phosphoribosyl transferase domain HYG84_08435 PF00586 AIR synthase related protein, N-terminal domain HYG84_08435 PF02769 AIR synthase related protein, C-terminal domain HYG84_08440 PF00551 Formyl transferase HYG84_08445 PF02142 MGS-like domain HYG84_08445 PF01808 AICARFT/IMPCHase bienzyme HYG84_08450 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HYG84_08450 PF02843 Phosphoribosylglycinamide synthetase, C domain HYG84_08450 PF02844 Phosphoribosylglycinamide synthetase, N domain HYG84_08460 PF02743 Cache domain HYG84_08460 PF00672 HAMP domain HYG84_08460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_08465 PF03180 NLPA lipoprotein HYG84_08470 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_08475 PF00005 ABC transporter HYG84_08475 PF09383 NIL domain HYG84_08480 PF13840 ACT domain HYG84_08480 PF00696 Amino acid kinase family HYG84_08485 PF05525 Branched-chain amino acid transport protein HYG84_08490 PF00375 Sodium:dicarboxylate symporter family HYG84_08495 PF02416 mttA/Hcf106 family HYG84_08500 PF00580 UvrD/REP helicase N-terminal domain HYG84_08500 PF13361 UvrD-like helicase C-terminal domain HYG84_08505 PF00533 BRCA1 C Terminus (BRCT) domain HYG84_08505 PF01653 NAD-dependent DNA ligase adenylation domain HYG84_08505 PF03120 NAD-dependent DNA ligase OB-fold domain HYG84_08505 PF12826 Helix-hairpin-helix motif HYG84_08515 PF02915 Rubrerythrin HYG84_08520 PF02686 Glu-tRNAGln amidotransferase C subunit HYG84_08525 PF01425 Amidase HYG84_08530 PF02934 GatB/GatE catalytic domain HYG84_08530 PF02637 GatB domain HYG84_08555 PF00586 AIR synthase related protein, N-terminal domain HYG84_08555 PF02769 AIR synthase related protein, C-terminal domain HYG84_08560 PF01520 N-acetylmuramoyl-L-alanine amidase HYG84_08560 PF00395 S-layer homology domain HYG84_08565 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) HYG84_08575 PF03725 3' exoribonuclease family, domain 2 HYG84_08575 PF01138 3' exoribonuclease family, domain 1 HYG84_08580 PF01725 Ham1 family HYG84_08650 PF00269 Small, acid-soluble spore proteins, alpha/beta type HYG84_08660 PF05105 Bacteriophage holin family HYG84_08700 PF07664 Ferrous iron transport protein B C terminus HYG84_08700 PF17910 FeoB cytosolic helical domain HYG84_08700 PF02421 Ferrous iron transport protein B HYG84_08700 PF07670 Nucleoside recognition HYG84_08715 PF00258 Flavodoxin HYG84_08720 PF04392 ABC transporter substrate binding protein HYG84_08725 PF00989 PAS fold HYG84_08725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_08725 PF00512 His Kinase A (phospho-acceptor) domain HYG84_08730 PF02954 Bacterial regulatory protein, Fis family HYG84_08730 PF00072 Response regulator receiver domain HYG84_08730 PF00158 Sigma-54 interaction domain HYG84_08735 PF01568 Molydopterin dinucleotide binding domain HYG84_08735 PF00384 Molybdopterin oxidoreductase HYG84_08735 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HYG84_08740 PF01568 Molydopterin dinucleotide binding domain HYG84_08740 PF00384 Molybdopterin oxidoreductase HYG84_08740 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HYG84_08750 PF13247 4Fe-4S dicluster domain HYG84_08755 PF02416 mttA/Hcf106 family HYG84_08760 PF12804 MobA-like NTP transferase domain HYG84_08765 PF00994 Probable molybdopterin binding domain HYG84_08765 PF03454 MoeA C-terminal region (domain IV) HYG84_08765 PF03453 MoeA N-terminal region (domain I and II) HYG84_08785 PF01520 N-acetylmuramoyl-L-alanine amidase HYG84_08790 PF04346 Ethanolamine utilisation protein, EutH HYG84_08800 PF07685 CobB/CobQ-like glutamine amidotransferase domain HYG84_08805 PF03186 CobD/Cbib protein HYG84_08810 PF00155 Aminotransferase class I and II HYG84_08820 PF01032 FecCD transport family HYG84_08825 PF00005 ABC transporter HYG84_08830 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HYG84_08835 PF02654 Cobalamin-5-phosphate synthase HYG84_08840 PF00300 Histidine phosphatase superfamily (branch 1) HYG84_08860 PF00672 HAMP domain HYG84_08860 PF02743 Cache domain HYG84_08860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_08890 PF07670 Nucleoside recognition HYG84_08895 PF07670 Nucleoside recognition HYG84_08900 PF13520 Amino acid permease HYG84_08905 PF01869 BadF/BadG/BcrA/BcrD ATPase family HYG84_08910 PF00133 tRNA synthetases class I (I, L, M and V) HYG84_08910 PF08264 Anticodon-binding domain of tRNA HYG84_08915 PF04239 Protein of unknown function (DUF421) HYG84_08920 PF03323 Bacillus/Clostridium GerA spore germination protein HYG84_08925 PF05504 Spore germination B3/ GerAC like, C-terminal HYG84_08935 PF03845 Spore germination protein HYG84_08975 PF04073 Aminoacyl-tRNA editing domain HYG84_08980 PF01797 Transposase IS200 like HYG84_09015 PF01867 CRISPR associated protein Cas1 HYG84_09020 PF09827 CRISPR associated protein Cas2 HYG84_09030 PF01966 HD domain HYG84_09030 PF01743 Poly A polymerase head domain HYG84_09030 PF12627 Probable RNA and SrmB- binding site of polymerase A HYG84_09045 PF00313 'Cold-shock' DNA-binding domain HYG84_09050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HYG84_09050 PF05698 Bacterial trigger factor protein (TF) C-terminus HYG84_09050 PF05697 Bacterial trigger factor protein (TF) HYG84_09055 PF00574 Clp protease HYG84_09060 PF06689 ClpX C4-type zinc finger HYG84_09060 PF07724 AAA domain (Cdc48 subfamily) HYG84_09060 PF10431 C-terminal, D2-small domain, of ClpB protein HYG84_09065 PF00004 ATPase family associated with various cellular activities (AAA) HYG84_09065 PF05362 Lon protease (S16) C-terminal proteolytic domain HYG84_09070 PF00462 Glutaredoxin HYG84_09075 PF00004 ATPase family associated with various cellular activities (AAA) HYG84_09075 PF05362 Lon protease (S16) C-terminal proteolytic domain HYG84_09075 PF02190 ATP-dependent protease La (LON) substrate-binding domain HYG84_09080 PF01926 50S ribosome-binding GTPase HYG84_09090 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain HYG84_09090 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain HYG84_09095 PF06826 Predicted Permease Membrane Region HYG84_09100 PF00301 Rubredoxin HYG84_09115 PF01348 Type II intron maturase HYG84_09115 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HYG84_09130 PF00403 Heavy-metal-associated domain HYG84_09135 PF01022 Bacterial regulatory protein, arsR family HYG84_09140 PF00403 Heavy-metal-associated domain HYG84_09145 PF00696 Amino acid kinase family HYG84_09150 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HYG84_09150 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HYG84_09155 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HYG84_09155 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HYG84_09165 PF01131 DNA topoisomerase HYG84_09165 PF01751 Toprim domain HYG84_09170 PF07694 5TMR of 5TMR-LYT HYG84_09170 PF00990 Diguanylate cyclase, GGDEF domain HYG84_09175 PF13091 PLD-like domain HYG84_09175 PF13396 Phospholipase_D-nuclease N-terminal HYG84_09190 PF01869 BadF/BadG/BcrA/BcrD ATPase family HYG84_09195 PF13478 XdhC Rossmann domain HYG84_09195 PF02625 XdhC and CoxI family HYG84_09205 PF02416 mttA/Hcf106 family HYG84_09210 PF12800 4Fe-4S binding domain HYG84_09210 PF13247 4Fe-4S dicluster domain HYG84_09215 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain HYG84_09215 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 HYG84_09220 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HYG84_09225 PF01869 BadF/BadG/BcrA/BcrD ATPase family HYG84_09230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HYG84_09235 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_09240 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_09240 PF12911 N-terminal TM domain of oligopeptide transport permease C HYG84_09245 PF00005 ABC transporter HYG84_09245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HYG84_09250 PF00005 ABC transporter HYG84_09250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HYG84_09260 PF02416 mttA/Hcf106 family HYG84_09265 PF02464 Competence-damaged protein HYG84_09265 PF00994 Probable molybdopterin binding domain HYG84_09270 PF02416 mttA/Hcf106 family HYG84_09275 PF00902 Sec-independent protein translocase protein (TatC) HYG84_09280 PF01297 Zinc-uptake complex component A periplasmic HYG84_09280 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment HYG84_09285 PF00005 ABC transporter HYG84_09290 PF00950 ABC 3 transport family HYG84_09300 PF13545 Crp-like helix-turn-helix domain HYG84_09300 PF00027 Cyclic nucleotide-binding domain HYG84_09315 PF00672 HAMP domain HYG84_09315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_09320 PF01268 Formate--tetrahydrofolate ligase HYG84_09330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HYG84_09335 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HYG84_09335 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HYG84_09335 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HYG84_09340 PF00579 tRNA synthetases class I (W and Y) HYG84_09350 PF00269 Small, acid-soluble spore proteins, alpha/beta type HYG84_09365 PF02390 Putative methyltransferase HYG84_09380 PF02645 Uncharacterised protein, DegV family COG1307 HYG84_09405 PF17783 CvfB-like winged helix domain HYG84_09405 PF13509 S1 domain HYG84_09410 PF01235 Sodium:alanine symporter family HYG84_09415 PF12804 MobA-like NTP transferase domain HYG84_09435 PF00550 Phosphopantetheine attachment site HYG84_09445 PF02690 Na+/Pi-cotransporter HYG84_09450 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain HYG84_09450 PF01522 Polysaccharide deacetylase HYG84_09455 PF03575 Peptidase family S51 HYG84_09460 PF02875 Mur ligase family, glutamate ligase domain HYG84_09460 PF08245 Mur ligase middle domain HYG84_09460 PF08443 RimK-like ATP-grasp domain HYG84_09470 PF02424 ApbE family HYG84_09480 PF00890 FAD binding domain HYG84_09480 PF04205 FMN-binding domain HYG84_09480 PF03358 NADPH-dependent FMN reductase HYG84_09485 PF04205 FMN-binding domain HYG84_09485 PF03358 NADPH-dependent FMN reductase HYG84_09485 PF00890 FAD binding domain HYG84_09490 PF00676 Dehydrogenase E1 component HYG84_09495 PF02780 Transketolase, C-terminal domain HYG84_09495 PF02779 Transketolase, pyrimidine binding domain HYG84_09500 PF02817 e3 binding domain HYG84_09500 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HYG84_09500 PF00364 Biotin-requiring enzyme HYG84_09505 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYG84_09505 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HYG84_09510 PF13426 PAS domain HYG84_09510 PF07228 Stage II sporulation protein E (SpoIIE) HYG84_09515 PF01966 HD domain HYG84_09520 PF03123 CAT RNA binding domain HYG84_09520 PF00874 PRD domain HYG84_09525 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HYG84_09530 PF00381 PTS HPr component phosphorylation site HYG84_09535 PF05524 PEP-utilising enzyme, N-terminal HYG84_09535 PF02896 PEP-utilising enzyme, TIM barrel domain HYG84_09535 PF00391 PEP-utilising enzyme, mobile domain HYG84_09540 PF03951 Glutamine synthetase, beta-Grasp domain HYG84_09540 PF00120 Glutamine synthetase, catalytic domain HYG84_09555 PF00072 Response regulator receiver domain HYG84_09560 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_09570 PF02796 Helix-turn-helix domain of resolvase HYG84_09570 PF00239 Resolvase, N terminal domain HYG84_09575 PF04073 Aminoacyl-tRNA editing domain HYG84_09620 PF00005 ABC transporter HYG84_09625 PF00989 PAS fold HYG84_09625 PF00512 His Kinase A (phospho-acceptor) domain HYG84_09625 PF18698 Histidine kinase sensor domain HYG84_09625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_09625 PF00672 HAMP domain HYG84_09635 PF00999 Sodium/hydrogen exchanger family HYG84_09650 PF00210 Ferritin-like domain HYG84_09665 PF01523 Putative modulator of DNA gyrase HYG84_09670 PF01523 Putative modulator of DNA gyrase HYG84_09675 PF07136 Protein of unknown function (DUF1385) HYG84_09695 PF00269 Small, acid-soluble spore proteins, alpha/beta type HYG84_09700 PF01098 Cell cycle protein HYG84_09705 PF00571 CBS domain HYG84_09705 PF01769 Divalent cation transporter HYG84_09705 PF03448 MgtE intracellular N domain HYG84_09710 PF07486 Cell Wall Hydrolase HYG84_09710 PF01471 Putative peptidoglycan binding domain HYG84_09715 PF14620 YpeB sporulation HYG84_09715 PF03413 Peptidase propeptide and YPEB domain HYG84_09730 PF01177 Asp/Glu/Hydantoin racemase HYG84_09740 PF01546 Peptidase family M20/M25/M40 HYG84_09745 PF12848 ABC transporter HYG84_09745 PF00005 ABC transporter HYG84_09745 PF16326 ABC transporter C-terminal domain HYG84_09750 PF01522 Polysaccharide deacetylase HYG84_09755 PF01943 Polysaccharide biosynthesis protein HYG84_09755 PF14667 Polysaccharide biosynthesis C-terminal domain HYG84_09795 PF01641 SelR domain HYG84_09815 PF09313 Domain of unknown function (DUF1971) HYG84_09815 PF03848 Tellurite resistance protein TehB HYG84_09850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HYG84_09875 PF01638 HxlR-like helix-turn-helix HYG84_09885 PF02678 Pirin HYG84_09885 PF17954 Quercetinase C-terminal cupin domain HYG84_09895 PF00689 Cation transporting ATPase, C-terminus HYG84_09895 PF00690 Cation transporter/ATPase, N-terminus HYG84_09900 PF00689 Cation transporting ATPase, C-terminus HYG84_09900 PF00690 Cation transporter/ATPase, N-terminus HYG84_09905 PF00486 Transcriptional regulatory protein, C terminal HYG84_09905 PF00072 Response regulator receiver domain HYG84_09910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_09910 PF00512 His Kinase A (phospho-acceptor) domain HYG84_09910 PF00989 PAS fold HYG84_09910 PF16736 Single Cache-like HYG84_09920 PF02954 Bacterial regulatory protein, Fis family HYG84_09920 PF13426 PAS domain HYG84_09920 PF00158 Sigma-54 interaction domain HYG84_09925 PF03313 Serine dehydratase alpha chain HYG84_09945 PF01066 CDP-alcohol phosphatidyltransferase HYG84_09950 PF10458 Valyl tRNA synthetase tRNA binding arm HYG84_09950 PF00133 tRNA synthetases class I (I, L, M and V) HYG84_09950 PF08264 Anticodon-binding domain of tRNA HYG84_09955 PF08245 Mur ligase middle domain HYG84_09955 PF02875 Mur ligase family, glutamate ligase domain HYG84_09980 PF00005 ABC transporter HYG84_09985 PF00269 Small, acid-soluble spore proteins, alpha/beta type HYG84_09995 PF02690 Na+/Pi-cotransporter HYG84_10000 PF00155 Aminotransferase class I and II HYG84_10005 PF01522 Polysaccharide deacetylase HYG84_10005 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain HYG84_10010 PF08245 Mur ligase middle domain HYG84_10010 PF02875 Mur ligase family, glutamate ligase domain HYG84_10010 PF01225 Mur ligase family, catalytic domain HYG84_10020 PF00589 Phage integrase family HYG84_10020 PF02899 Phage integrase, N-terminal SAM-like domain HYG84_10130 PF00156 Phosphoribosyl transferase domain HYG84_10140 PF02525 Flavodoxin-like fold HYG84_10145 PF13367 PrsW family intramembrane metalloprotease HYG84_10160 PF10502 Signal peptidase, peptidase S26 HYG84_10165 PF00571 CBS domain HYG84_10170 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HYG84_10170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HYG84_10170 PF02824 TGS domain HYG84_10170 PF03129 Anticodon binding domain HYG84_10175 PF04960 Glutaminase HYG84_10185 PF13649 Methyltransferase domain HYG84_10190 PF00313 'Cold-shock' DNA-binding domain HYG84_10195 PF01430 Hsp33 protein HYG84_10225 PF01381 Helix-turn-helix HYG84_10255 PF01520 N-acetylmuramoyl-L-alanine amidase HYG84_10260 PF05105 Bacteriophage holin family HYG84_10275 PF01726 LexA DNA binding domain HYG84_10275 PF00717 Peptidase S24-like HYG84_10290 PF01726 LexA DNA binding domain HYG84_10290 PF00717 Peptidase S24-like HYG84_10320 PF00583 Acetyltransferase (GNAT) family HYG84_10355 PF00269 Small, acid-soluble spore proteins, alpha/beta type HYG84_10365 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase HYG84_10380 PF02421 Ferrous iron transport protein B HYG84_10380 PF07670 Nucleoside recognition HYG84_10380 PF17910 FeoB cytosolic helical domain HYG84_10380 PF07664 Ferrous iron transport protein B C terminus HYG84_10385 PF07664 Ferrous iron transport protein B C terminus HYG84_10385 PF17910 FeoB cytosolic helical domain HYG84_10385 PF02421 Ferrous iron transport protein B HYG84_10385 PF07670 Nucleoside recognition HYG84_10395 PF01325 Iron dependent repressor, N-terminal DNA binding domain HYG84_10395 PF02742 Iron dependent repressor, metal binding and dimerisation domain HYG84_10405 PF04286 Protein of unknown function (DUF445) HYG84_10405 PF04286 Protein of unknown function (DUF445) HYG84_10410 PF03129 Anticodon binding domain HYG84_10410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HYG84_10410 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HYG84_10410 PF02824 TGS domain HYG84_10415 PF01022 Bacterial regulatory protein, arsR family HYG84_10420 PF00005 ABC transporter HYG84_10425 PF03649 Uncharacterised protein family (UPF0014) HYG84_10430 PF00004 ATPase family associated with various cellular activities (AAA) HYG84_10430 PF17862 AAA+ lid domain HYG84_10430 PF01434 Peptidase family M41 HYG84_10435 PF05198 Translation initiation factor IF-3, N-terminal domain HYG84_10435 PF00707 Translation initiation factor IF-3, C-terminal domain HYG84_10440 PF01632 Ribosomal protein L35 HYG84_10445 PF00453 Ribosomal protein L20 HYG84_10450 PF02386 Cation transport protein HYG84_10455 PF02254 TrkA-N domain HYG84_10455 PF02080 TrkA-C domain HYG84_10460 PF08032 RNA 2'-O ribose methyltransferase substrate binding HYG84_10460 PF00588 SpoU rRNA Methylase family HYG84_10470 PF01409 tRNA synthetases class II core domain (F) HYG84_10470 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HYG84_10475 PF03484 tRNA synthetase B5 domain HYG84_10475 PF03147 Ferredoxin-fold anticodon binding domain HYG84_10475 PF01588 Putative tRNA binding domain HYG84_10475 PF03483 B3/4 domain HYG84_10475 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HYG84_10480 PF05164 Cell division protein ZapA HYG84_10485 PF13495 Phage integrase, N-terminal SAM-like domain HYG84_10485 PF00589 Phage integrase family HYG84_10510 PF05105 Bacteriophage holin family HYG84_10535 PF01726 LexA DNA binding domain HYG84_10535 PF00717 Peptidase S24-like HYG84_10540 PF01136 Peptidase family U32 HYG84_10540 PF12392 Collagenase HYG84_10550 PF04461 Protein of unknown function (DUF520) HYG84_10560 PF01047 MarR family HYG84_10565 PF01554 MatE HYG84_10590 PF01584 CheW-like domain HYG84_10590 PF00072 Response regulator receiver domain HYG84_10595 PF00571 CBS domain HYG84_10595 PF02833 DHHA2 domain HYG84_10595 PF07085 DRTGG domain HYG84_10595 PF01368 DHH family HYG84_10610 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HYG84_10610 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HYG84_10610 PF10371 Domain of unknown function HYG84_10610 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HYG84_10610 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HYG84_10630 PF00860 Permease family HYG84_10635 PF00753 Metallo-beta-lactamase superfamily HYG84_10635 PF00258 Flavodoxin HYG84_10645 PF00326 Prolyl oligopeptidase family HYG84_10645 PF07676 WD40-like Beta Propeller Repeat HYG84_10670 PF08239 Bacterial SH3 domain HYG84_10670 PF01520 N-acetylmuramoyl-L-alanine amidase HYG84_10675 PF14266 Putative component of 'biosynthetic module' HYG84_10680 PF01625 Peptide methionine sulfoxide reductase HYG84_10690 PF00664 ABC transporter transmembrane region HYG84_10690 PF00005 ABC transporter HYG84_10695 PF00664 ABC transporter transmembrane region HYG84_10695 PF00005 ABC transporter HYG84_10700 PF01520 N-acetylmuramoyl-L-alanine amidase HYG84_10700 PF04122 Putative cell wall binding repeat 2 HYG84_10715 PF02464 Competence-damaged protein HYG84_10715 PF00994 Probable molybdopterin binding domain HYG84_10715 PF18146 Damage-inducible protein CinA KH domain HYG84_10725 PF00675 Insulinase (Peptidase family M16) HYG84_10725 PF05193 Peptidase M16 inactive domain HYG84_10725 PF08367 Peptidase M16C associated HYG84_10730 PF01370 NAD dependent epimerase/dehydratase family HYG84_10735 PF00163 Ribosomal protein S4/S9 N-terminal domain HYG84_10735 PF01479 S4 domain HYG84_10755 PF01381 Helix-turn-helix HYG84_10780 PF00561 alpha/beta hydrolase fold HYG84_10780 PF08386 TAP-like protein HYG84_10790 PF17676 LD-carboxypeptidase C-terminal domain HYG84_10790 PF02016 LD-carboxypeptidase N-terminal domain HYG84_10800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HYG84_10805 PF00892 EamA-like transporter family HYG84_10810 PF12833 Helix-turn-helix domain HYG84_10810 PF17853 GGDEF-like domain HYG84_10895 PF01042 Endoribonuclease L-PSP HYG84_10905 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HYG84_10905 PF01348 Type II intron maturase HYG84_10980 PF01348 Type II intron maturase HYG84_10980 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HYG84_11005 PF06445 GyrI-like small molecule binding domain HYG84_11020 PF04542 Sigma-70 region 2 HYG84_11020 PF08281 Sigma-70, region 4 HYG84_11065 PF08331 Domain of unknown function (DUF1730) HYG84_11095 PF13614 AAA domain HYG84_11100 PF02195 ParB-like nuclease domain HYG84_11100 PF17762 HTH domain found in ParB protein HYG84_11120 PF13362 Toprim domain HYG84_11120 PF18818 Metallopeptidase superfamily domain HYG84_11120 PF08401 Domain of unknown function (DUF1738) HYG84_11135 PF03432 Relaxase/Mobilisation nuclease domain HYG84_11155 PF00436 Single-strand binding protein family HYG84_11240 PF01381 Helix-turn-helix HYG84_11255 PF02661 Fic/DOC family HYG84_11255 PF17841 BID domain of Bartonella effector protein (Bep) HYG84_11265 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HYG84_11290 PF00080 Copper/zinc superoxide dismutase (SODC) HYG84_11295 PF07670 Nucleoside recognition HYG84_11300 PF07670 Nucleoside recognition HYG84_11310 PF02915 Rubrerythrin HYG84_11330 PF14492 Elongation Factor G, domain II HYG84_11330 PF00679 Elongation factor G C-terminus HYG84_11330 PF00009 Elongation factor Tu GTP binding domain HYG84_11330 PF03144 Elongation factor Tu domain 2 HYG84_11340 PF00488 MutS domain V HYG84_11340 PF01713 Smr domain HYG84_11345 PF04463 Protein of unknown function (DUF523) HYG84_11350 PF00750 tRNA synthetases class I (R) HYG84_11350 PF05746 DALR anticodon binding domain HYG84_11350 PF03485 Arginyl tRNA synthetase N terminal domain HYG84_11370 PF02310 B12 binding domain HYG84_11370 PF04055 Radical SAM superfamily HYG84_11385 PF01515 Phosphate acetyl/butaryl transferase HYG84_11530 PF00963 Cohesin domain HYG84_11530 PF00395 S-layer homology domain HYG84_11535 PF00580 UvrD/REP helicase N-terminal domain HYG84_11535 PF13361 UvrD-like helicase C-terminal domain HYG84_11540 PF00710 Asparaginase, N-terminal HYG84_11540 PF17763 Glutaminase/Asparaginase C-terminal domain HYG84_11550 PF00497 Bacterial extracellular solute-binding proteins, family 3 HYG84_11560 PF00266 Aminotransferase class-V HYG84_11565 PF02568 Thiamine biosynthesis protein (ThiI) HYG84_11565 PF02926 THUMP domain HYG84_11570 PF01967 MoaC family HYG84_11575 PF00994 Probable molybdopterin binding domain HYG84_11580 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV HYG84_11590 PF00117 Glutamine amidotransferase class-I HYG84_11590 PF03352 Methyladenine glycosylase HYG84_11590 PF13673 Acetyltransferase (GNAT) domain HYG84_11590 PF00958 GMP synthase C terminal domain HYG84_11590 PF13302 Acetyltransferase (GNAT) domain HYG84_11595 PF01740 STAS domain HYG84_11600 PF13581 Histidine kinase-like ATPase domain HYG84_11605 PF04542 Sigma-70 region 2 HYG84_11605 PF04539 Sigma-70 region 3 HYG84_11605 PF04545 Sigma-70, region 4 HYG84_11610 PF12164 Stage V sporulation protein AA HYG84_11615 PF13782 Stage V sporulation protein AB HYG84_11625 PF03862 SpoVAC/SpoVAEB sporulation membrane protein HYG84_11630 PF07451 Stage V sporulation protein AD (SpoVAD) HYG84_11635 PF03862 SpoVAC/SpoVAEB sporulation membrane protein HYG84_11640 PF14097 Stage V sporulation protein AE1 HYG84_11645 PF00912 Transglycosylase HYG84_11645 PF00905 Penicillin binding protein transpeptidase domain HYG84_11655 PF16360 GTP-binding GTPase Middle Region HYG84_11655 PF13167 GTP-binding GTPase N-terminal HYG84_11655 PF01926 50S ribosome-binding GTPase HYG84_11670 PF09186 Domain of unknown function (DUF1949) HYG84_11670 PF01205 Uncharacterized protein family UPF0029 HYG84_11690 PF02540 NAD synthase HYG84_11695 PF01709 Transcriptional regulator HYG84_11705 PF13673 Acetyltransferase (GNAT) domain HYG84_11715 PF01381 Helix-turn-helix HYG84_11725 PF01709 Transcriptional regulator HYG84_11730 PF01476 LysM domain HYG84_11730 PF00877 NlpC/P60 family HYG84_11730 PF08239 Bacterial SH3 domain HYG84_11735 PF01464 Transglycosylase SLT domain HYG84_11745 PF13237 4Fe-4S dicluster domain HYG84_11745 PF10531 SLBB domain HYG84_11745 PF13375 RnfC Barrel sandwich hybrid domain HYG84_11745 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HYG84_11750 PF03116 NQR2, RnfD, RnfE family HYG84_11755 PF04205 FMN-binding domain HYG84_11760 PF02508 Rnf-Nqr subunit, membrane protein HYG84_11765 PF02508 Rnf-Nqr subunit, membrane protein HYG84_11770 PF13187 4Fe-4S dicluster domain HYG84_11770 PF00037 4Fe-4S binding domain HYG84_11770 PF04060 Putative Fe-S cluster HYG84_11785 PF02545 Maf-like protein HYG84_11790 PF04002 RadC-like JAB domain HYG84_11800 PF04085 rod shape-determining protein MreC HYG84_11810 PF03717 Penicillin-binding Protein dimerisation domain HYG84_11810 PF00905 Penicillin binding protein transpeptidase domain HYG84_11815 PF03775 Septum formation inhibitor MinC, C-terminal domain HYG84_11820 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HYG84_11825 PF03776 Septum formation topological specificity factor MinE HYG84_11850 PF10150 Ribonuclease E/G family HYG84_11850 PF00575 S1 RNA binding domain HYG84_11855 PF00829 Ribosomal prokaryotic L21 protein HYG84_11865 PF01016 Ribosomal L27 protein HYG84_11870 PF01926 50S ribosome-binding GTPase HYG84_11870 PF01018 GTP1/OBG HYG84_11870 PF09269 Domain of unknown function (DUF1967) HYG84_11880 PF01985 CRS1 / YhbY (CRM) domain HYG84_11885 PF01467 Cytidylyltransferase-like HYG84_11890 PF01966 HD domain HYG84_11895 PF03816 Cell envelope-related transcriptional attenuator domain HYG84_11900 PF01699 Sodium/calcium exchanger protein HYG84_11915 PF01042 Endoribonuclease L-PSP HYG84_11920 PF03315 Serine dehydratase beta chain HYG84_11920 PF01842 ACT domain HYG84_11925 PF03313 Serine dehydratase alpha chain HYG84_11930 PF07943 Penicillin-binding protein 5, C-terminal domain HYG84_11930 PF00768 D-alanyl-D-alanine carboxypeptidase HYG84_11935 PF10531 SLBB domain HYG84_11945 PF01235 Sodium:alanine symporter family HYG84_11950 PF12390 Selenocysteine synthase N terminal HYG84_11950 PF03841 L-seryl-tRNA selenium transferase HYG84_11955 PF00009 Elongation factor Tu GTP binding domain HYG84_11955 PF03144 Elongation factor Tu domain 2 HYG84_11955 PF09105 Elongation factor SelB, winged helix HYG84_11955 PF09106 Elongation factor SelB, winged helix HYG84_11955 PF09107 Elongation factor SelB, winged helix HYG84_11960 PF00072 Response regulator receiver domain HYG84_11960 PF00486 Transcriptional regulatory protein, C terminal HYG84_11965 PF16736 Single Cache-like HYG84_11965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_11965 PF00989 PAS fold HYG84_11965 PF00512 His Kinase A (phospho-acceptor) domain HYG84_11975 PF00849 RNA pseudouridylate synthase HYG84_11975 PF01479 S4 domain HYG84_11980 PF02632 BioY family HYG84_12005 PF04070 Domain of unknown function (DUF378) HYG84_12015 PF02075 Crossover junction endodeoxyribonuclease RuvC HYG84_12020 PF07499 RuvA, C-terminal domain HYG84_12020 PF01330 RuvA N terminal domain HYG84_12025 PF17864 RuvB AAA lid domain HYG84_12025 PF05491 RuvB C-terminal winged helix domain HYG84_12025 PF05496 Holliday junction DNA helicase RuvB P-loop domain HYG84_12030 PF04122 Putative cell wall binding repeat 2 HYG84_12030 PF08486 Stage II sporulation protein HYG84_12035 PF02547 Queuosine biosynthesis protein HYG84_12040 PF01702 Queuine tRNA-ribosyltransferase HYG84_12045 PF02699 Preprotein translocase subunit HYG84_12060 PF04055 Radical SAM superfamily HYG84_12065 PF00132 Bacterial transferase hexapeptide (six repeats) HYG84_12070 PF07549 SecD/SecF GG Motif HYG84_12070 PF02355 Protein export membrane protein HYG84_12075 PF07549 SecD/SecF GG Motif HYG84_12075 PF02355 Protein export membrane protein HYG84_12080 PF01368 DHH family HYG84_12080 PF02272 DHHA1 domain HYG84_12080 PF17768 RecJ OB domain HYG84_12080 PF10141 Single-strand DNA-specific exonuclease, C terminal domain HYG84_12085 PF00156 Phosphoribosyl transferase domain HYG84_12090 PF13291 ACT domain HYG84_12090 PF02824 TGS domain HYG84_12090 PF04607 Region found in RelA / SpoT proteins HYG84_12095 PF02580 D-Tyr-tRNA(Tyr) deacylase HYG84_12100 PF00753 Metallo-beta-lactamase superfamily HYG84_12105 PF04055 Radical SAM superfamily HYG84_12110 PF13393 Histidyl-tRNA synthetase HYG84_12110 PF03129 Anticodon binding domain HYG84_12115 PF01336 OB-fold nucleic acid binding domain HYG84_12115 PF00152 tRNA synthetases class II (D, K and N) HYG84_12115 PF02938 GAD domain HYG84_12130 PF00899 ThiF family HYG84_12155 PF02810 SEC-C motif HYG84_12155 PF07516 SecA Wing and Scaffold domain HYG84_12155 PF01043 SecA preprotein cross-linking domain HYG84_12155 PF07517 SecA DEAD-like domain HYG84_12185 PF02127 Aminopeptidase I zinc metalloprotease (M18) HYG84_12225 PF01551 Peptidase family M23 HYG84_12240 PF00464 Serine hydroxymethyltransferase HYG84_12255 PF00291 Pyridoxal-phosphate dependent enzyme HYG84_12260 PF16552 D-ornithine 4,5-aminomutase alpha-subunit HYG84_12265 PF02310 B12 binding domain HYG84_12265 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit HYG84_12265 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase HYG84_12270 PF13941 MutL protein HYG84_12275 PF01168 Alanine racemase, N-terminal domain HYG84_12300 PF05496 Holliday junction DNA helicase RuvB P-loop domain HYG84_12300 PF12002 MgsA AAA+ ATPase C terminal HYG84_12300 PF16193 AAA C-terminal domain HYG84_12305 PF01113 Dihydrodipicolinate reductase, N-terminus HYG84_12305 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain HYG84_12310 PF00269 Small, acid-soluble spore proteins, alpha/beta type HYG84_12330 PF00583 Acetyltransferase (GNAT) family HYG84_12335 PF00491 Arginase family HYG84_12365 PF17760 UvrA interaction domain HYG84_12365 PF17755 UvrA DNA-binding domain HYG84_12375 PF01416 tRNA pseudouridine synthase HYG84_12390 PF03965 Penicillinase repressor HYG84_12405 PF11799 impB/mucB/samB family C-terminal domain HYG84_12405 PF11798 IMS family HHH motif HYG84_12405 PF00817 impB/mucB/samB family HYG84_12410 PF06953 Arsenical resistance operon trans-acting repressor ArsD HYG84_12415 PF02374 Anion-transporting ATPase HYG84_12420 PF01022 Bacterial regulatory protein, arsR family HYG84_12425 PF01451 Low molecular weight phosphotyrosine protein phosphatase HYG84_12430 PF01758 Sodium Bile acid symporter family HYG84_12440 PF00183 Hsp90 protein HYG84_12460 PF00188 Cysteine-rich secretory protein family HYG84_12470 PF04321 RmlD substrate binding domain HYG84_12480 PF02082 Transcriptional regulator HYG84_12485 PF00266 Aminotransferase class-V HYG84_12490 PF04324 BFD-like [2Fe-2S] binding domain HYG84_12490 PF01592 NifU-like N terminal domain HYG84_12490 PF01106 NifU-like domain HYG84_12505 PF01594 AI-2E family transporter HYG84_12510 PF00574 Clp protease HYG84_12515 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HYG84_12515 PF01411 tRNA synthetases class II (A) HYG84_12515 PF02272 DHHA1 domain HYG84_12520 PF06135 IreB regulatory phosphoprotein HYG84_12530 PF04055 Radical SAM superfamily HYG84_12535 PF03652 Holliday junction resolvase HYG84_12540 PF06949 Protein of unknown function (DUF1292) HYG84_12545 PF01475 Ferric uptake regulator family HYG84_12550 PF17770 Ribonuclease J C-terminal domain HYG84_12550 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HYG84_12550 PF00753 Metallo-beta-lactamase superfamily HYG84_12565 PF01596 O-methyltransferase HYG84_12570 PF01136 Peptidase family U32 HYG84_12570 PF16325 Peptidase family U32 C-terminal domain HYG84_12575 PF00485 Phosphoribulokinase / Uridine kinase family HYG84_12580 PF03793 PASTA domain HYG84_12580 PF03717 Penicillin-binding Protein dimerisation domain HYG84_12580 PF00905 Penicillin binding protein transpeptidase domain HYG84_12585 PF04542 Sigma-70 region 2 HYG84_12585 PF04545 Sigma-70, region 4 HYG84_12590 PF00239 Resolvase, N terminal domain HYG84_12590 PF02796 Helix-turn-helix domain of resolvase HYG84_12615 PF04545 Sigma-70, region 4 HYG84_12615 PF04542 Sigma-70 region 2 HYG84_12620 PF13302 Acetyltransferase (GNAT) domain HYG84_12625 PF12804 MobA-like NTP transferase domain HYG84_12650 PF00384 Molybdopterin oxidoreductase HYG84_12650 PF18364 Molybdopterin oxidoreductase N-terminal domain HYG84_12650 PF01568 Molydopterin dinucleotide binding domain HYG84_12655 PF12800 4Fe-4S binding domain HYG84_12655 PF13247 4Fe-4S dicluster domain HYG84_12665 PF00005 ABC transporter HYG84_12665 PF16326 ABC transporter C-terminal domain HYG84_12665 PF12848 ABC transporter HYG84_12675 PF01156 Inosine-uridine preferring nucleoside hydrolase HYG84_12715 PF00269 Small, acid-soluble spore proteins, alpha/beta type HYG84_12755 PF08000 Bacterial PH domain HYG84_12765 PF00395 S-layer homology domain HYG84_12765 PF00963 Cohesin domain HYG84_12775 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HYG84_12780 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HYG84_12780 PF01348 Type II intron maturase HYG84_12800 PF13735 tRNA nucleotidyltransferase domain 2 putative HYG84_12800 PF12627 Probable RNA and SrmB- binding site of polymerase A HYG84_12800 PF01743 Poly A polymerase head domain HYG84_12850 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HYG84_12850 PF01488 Shikimate / quinate 5-dehydrogenase HYG84_12850 PF08501 Shikimate dehydrogenase substrate binding domain HYG84_12855 PF00437 Type II/IV secretion system protein HYG84_12855 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HYG84_12860 PF00437 Type II/IV secretion system protein HYG84_12865 PF00482 Type II secretion system (T2SS), protein F HYG84_12870 PF07963 Prokaryotic N-terminal methylation motif HYG84_12870 PF00114 Pilin (bacterial filament) HYG84_12890 PF06750 Bacterial Peptidase A24 N-terminal domain HYG84_12890 PF01478 Type IV leader peptidase family HYG84_12915 PF00395 S-layer homology domain HYG84_12915 PF00963 Cohesin domain HYG84_12920 PF07963 Prokaryotic N-terminal methylation motif HYG84_12945 PF01202 Shikimate kinase HYG84_12950 PF00557 Metallopeptidase family M24 HYG84_12950 PF01321 Creatinase/Prolidase N-terminal domain HYG84_12955 PF01132 Elongation factor P (EF-P) OB domain HYG84_12955 PF08207 Elongation factor P (EF-P) KOW-like domain HYG84_12955 PF09285 Elongation factor P, C-terminal HYG84_12975 PF06686 Stage III sporulation protein AC/AD protein family HYG84_12980 PF06686 Stage III sporulation protein AC/AD protein family HYG84_12985 PF09546 Stage III sporulation protein AE (spore_III_AE) HYG84_13005 PF03780 Asp23 family, cell envelope-related function HYG84_13010 PF01029 NusB family HYG84_13015 PF00814 Glycoprotease family HYG84_13020 PF02601 Exonuclease VII, large subunit HYG84_13020 PF13742 OB-fold nucleic acid binding domain HYG84_13025 PF02609 Exonuclease VII small subunit HYG84_13030 PF00348 Polyprenyl synthetase HYG84_13035 PF02681 Divergent PAP2 family HYG84_13045 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HYG84_13045 PF02780 Transketolase, C-terminal domain HYG84_13045 PF02779 Transketolase, pyrimidine binding domain HYG84_13050 PF01479 S4 domain HYG84_13050 PF01728 FtsJ-like methyltransferase HYG84_13055 PF01316 Arginine repressor, DNA binding domain HYG84_13055 PF02863 Arginine repressor, C-terminal domain HYG84_13060 PF13476 AAA domain HYG84_13065 PF17820 PDZ domain HYG84_13065 PF05580 SpoIVB peptidase S55 HYG84_13070 PF00072 Response regulator receiver domain HYG84_13070 PF08769 Sporulation initiation factor Spo0A C terminal HYG84_13075 PF02311 AraC-like ligand binding domain HYG84_13075 PF12833 Helix-turn-helix domain HYG84_13080 PF00589 Phage integrase family HYG84_13085 PF02631 RecX family HYG84_13100 PF00535 Glycosyl transferase family 2 HYG84_13115 PF00293 NUDIX domain HYG84_13125 PF00589 Phage integrase family HYG84_13125 PF02899 Phage integrase, N-terminal SAM-like domain HYG84_13130 PF01676 Metalloenzyme superfamily HYG84_13135 PF01048 Phosphorylase superfamily HYG84_13140 PF01048 Phosphorylase superfamily HYG84_13145 PF02885 Glycosyl transferase family, helical bundle domain HYG84_13145 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HYG84_13145 PF00591 Glycosyl transferase family, a/b domain HYG84_13150 PF07943 Penicillin-binding protein 5, C-terminal domain HYG84_13150 PF00768 D-alanyl-D-alanine carboxypeptidase HYG84_13155 PF02163 Peptidase family M50 HYG84_13160 PF02616 Segregation and condensation protein ScpA HYG84_13165 PF04079 Segregation and condensation complex subunit ScpB HYG84_13170 PF00491 Arginase family HYG84_13175 PF17284 Spermidine synthase tetramerisation domain HYG84_13180 PF02675 S-adenosylmethionine decarboxylase HYG84_13195 PF09579 Sporulation protein YtfJ (Spore_YtfJ) HYG84_13205 PF00768 D-alanyl-D-alanine carboxypeptidase HYG84_13205 PF07943 Penicillin-binding protein 5, C-terminal domain HYG84_13215 PF01134 Glucose inhibited division protein A HYG84_13215 PF13932 GidA associated domain HYG84_13220 PF00849 RNA pseudouridylate synthase HYG84_13220 PF01479 S4 domain HYG84_13230 PF06962 Putative rRNA methylase HYG84_13235 PF00364 Biotin-requiring enzyme HYG84_13235 PF00682 HMGL-like HYG84_13235 PF02436 Conserved carboxylase domain HYG84_13245 PF01975 Survival protein SurE HYG84_13255 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HYG84_13255 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HYG84_13255 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HYG84_13260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HYG84_13270 PF01418 Helix-turn-helix domain, rpiR family HYG84_13270 PF01380 SIS domain HYG84_13275 PF00300 Histidine phosphatase superfamily (branch 1) HYG84_13290 PF07736 Chorismate mutase type I HYG84_13295 PF02224 Cytidylate kinase HYG84_13300 PF01553 Acyltransferase HYG84_13305 PF02401 LytB protein HYG84_13310 PF00575 S1 RNA binding domain HYG84_13315 PF03705 CheR methyltransferase, all-alpha domain HYG84_13315 PF01739 CheR methyltransferase, SAM binding domain HYG84_13320 PF05343 M42 glutamyl aminopeptidase HYG84_13325 PF05343 M42 glutamyl aminopeptidase HYG84_13330 PF05343 M42 glutamyl aminopeptidase HYG84_13335 PF13411 MerR HTH family regulatory protein HYG84_13340 PF00155 Aminotransferase class I and II HYG84_13345 PF11871 Domain of unknown function (DUF3391) HYG84_13345 PF01966 HD domain HYG84_13350 PF04055 Radical SAM superfamily HYG84_13350 PF01938 TRAM domain HYG84_13350 PF00919 Uncharacterized protein family UPF0004 HYG84_13355 PF01624 MutS domain I HYG84_13355 PF05188 MutS domain II HYG84_13355 PF05192 MutS domain III HYG84_13355 PF05190 MutS family domain IV HYG84_13355 PF00488 MutS domain V HYG84_13360 PF01119 DNA mismatch repair protein, C-terminal domain HYG84_13360 PF08676 MutL C terminal dimerisation domain HYG84_13370 PF17209 Hfq protein HYG84_13375 PF17866 AAA lid domain HYG84_13375 PF00004 ATPase family associated with various cellular activities (AAA) HYG84_13380 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HYG84_13380 PF01926 50S ribosome-binding GTPase HYG84_13395 PF06838 Methionine gamma-lyase HYG84_13400 PF01726 LexA DNA binding domain HYG84_13400 PF00717 Peptidase S24-like HYG84_13405 PF02899 Phage integrase, N-terminal SAM-like domain HYG84_13405 PF00589 Phage integrase family HYG84_13420 PF00704 Glycosyl hydrolases family 18 HYG84_13425 PF01266 FAD dependent oxidoreductase HYG84_13440 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYG84_13440 PF04324 BFD-like [2Fe-2S] binding domain HYG84_13450 PF01965 DJ-1/PfpI family HYG84_13465 PF00155 Aminotransferase class I and II HYG84_13475 PF02811 PHP domain HYG84_13480 PF04232 Stage V sporulation protein S (SpoVS) HYG84_13485 PF00013 KH domain HYG84_13485 PF01966 HD domain HYG84_13485 PF12072 Domain of unknown function (DUF3552) HYG84_13490 PF00154 recA bacterial DNA recombination protein HYG84_13495 PF01066 CDP-alcohol phosphatidyltransferase HYG84_13500 PF00581 Rhodanese-like domain HYG84_13505 PF17854 FtsK alpha domain HYG84_13505 PF09397 Ftsk gamma domain HYG84_13505 PF01580 FtsK/SpoIIIE family HYG84_13510 PF00574 Clp protease HYG84_13520 PF05193 Peptidase M16 inactive domain HYG84_13520 PF00675 Insulinase (Peptidase family M16) HYG84_13525 PF01522 Polysaccharide deacetylase HYG84_13530 PF00013 KH domain HYG84_13530 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HYG84_13530 PF01138 3' exoribonuclease family, domain 1 HYG84_13530 PF03725 3' exoribonuclease family, domain 2 HYG84_13530 PF00575 S1 RNA binding domain HYG84_13535 PF00312 Ribosomal protein S15 HYG84_13540 PF06574 FAD synthetase HYG84_13540 PF01687 Riboflavin kinase HYG84_13545 PF16198 tRNA pseudouridylate synthase B C-terminal domain HYG84_13545 PF01509 TruB family pseudouridylate synthase (N terminal domain) HYG84_13550 PF01368 DHH family HYG84_13550 PF02272 DHHA1 domain HYG84_13555 PF02033 Ribosome-binding factor A HYG84_13560 PF11987 Translation-initiation factor 2 HYG84_13560 PF04760 Translation initiation factor IF-2, N-terminal region HYG84_13560 PF00009 Elongation factor Tu GTP binding domain HYG84_13565 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family HYG84_13570 PF04296 Protein of unknown function (DUF448) HYG84_13575 PF08529 NusA N-terminal domain HYG84_13575 PF00575 S1 RNA binding domain HYG84_13575 PF13184 NusA-like KH domain HYG84_13580 PF17384 RimP C-terminal SH3 domain HYG84_13580 PF02576 RimP N-terminal domain HYG84_13585 PF14579 Helix-hairpin-helix motif HYG84_13585 PF02811 PHP domain HYG84_13585 PF07733 Bacterial DNA polymerase III alpha NTPase domain HYG84_13585 PF00929 Exonuclease HYG84_13585 PF01336 OB-fold nucleic acid binding domain HYG84_13585 PF11490 DNA polymerase III polC-type N-terminus II HYG84_13585 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HYG84_13590 PF00535 Glycosyl transferase family 2 HYG84_13595 PF04551 GcpE protein HYG84_13600 PF17820 PDZ domain HYG84_13600 PF02163 Peptidase family M50 HYG84_13605 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HYG84_13605 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HYG84_13605 PF13288 DXP reductoisomerase C-terminal domain HYG84_13615 PF01255 Putative undecaprenyl diphosphate synthase HYG84_13625 PF01765 Ribosome recycling factor HYG84_13630 PF00696 Amino acid kinase family HYG84_13635 PF00889 Elongation factor TS HYG84_13640 PF00318 Ribosomal protein S2 HYG84_13655 PF04542 Sigma-70 region 2 HYG84_13655 PF04539 Sigma-70 region 3 HYG84_13655 PF04545 Sigma-70, region 4 HYG84_13660 PF03975 CheD chemotactic sensory transduction HYG84_13665 PF04509 CheC-like family HYG84_13670 PF01584 CheW-like domain HYG84_13675 PF01627 Hpt domain HYG84_13675 PF07194 P2 response regulator binding domain HYG84_13675 PF02895 Signal transducing histidine kinase, homodimeric domain HYG84_13675 PF01584 CheW-like domain HYG84_13675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_13680 PF01339 CheB methylesterase HYG84_13680 PF00072 Response regulator receiver domain HYG84_13690 PF10609 NUBPL iron-transfer P-loop NTPase HYG84_13695 PF00448 SRP54-type protein, GTPase domain HYG84_13700 PF00771 FHIPEP family HYG84_13705 PF01312 FlhB HrpN YscU SpaS Family HYG84_13710 PF01311 Bacterial export proteins, family 1 HYG84_13715 PF01313 Bacterial export proteins, family 3 HYG84_13720 PF00813 FliP family HYG84_13730 PF00072 Response regulator receiver domain HYG84_13735 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HYG84_13735 PF04509 CheC-like family HYG84_13740 PF02154 Flagellar motor switch protein FliM HYG84_13740 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HYG84_13750 PF13677 Membrane MotB of proton-channel complex MotA/MotB HYG84_13750 PF00691 OmpA family HYG84_13755 PF01618 MotA/TolQ/ExbB proton channel family HYG84_13765 PF07559 Flagellar basal body protein FlaE HYG84_13765 PF00460 Flagella basal body rod protein HYG84_13765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HYG84_13775 PF03963 Flagellar hook capping protein - N-terminal region HYG84_13795 PF02874 ATP synthase alpha/beta family, beta-barrel domain HYG84_13795 PF18269 T3SS EscN ATPase C-terminal domain HYG84_13795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HYG84_13805 PF01706 FliG C-terminal domain HYG84_13805 PF14841 FliG middle domain HYG84_13805 PF14842 FliG N-terminal domain HYG84_13810 PF01514 Secretory protein of YscJ/FliF family HYG84_13810 PF08345 Flagellar M-ring protein C-terminal HYG84_13815 PF02049 Flagellar hook-basal body complex protein FliE HYG84_13820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HYG84_13820 PF00460 Flagella basal body rod protein HYG84_13825 PF00460 Flagella basal body rod protein HYG84_13830 PF08222 CodY helix-turn-helix domain HYG84_13830 PF06018 CodY GAF-like domain HYG84_13835 PF01131 DNA topoisomerase HYG84_13835 PF01396 Topoisomerase DNA binding C4 zinc finger HYG84_13835 PF01751 Toprim domain HYG84_13840 PF18255 DNA processing protein A sterile alpha motif domain HYG84_13840 PF02481 DNA recombination-mediator protein A HYG84_13845 PF01078 Magnesium chelatase, subunit ChlI HYG84_13845 PF13335 Magnesium chelatase, subunit ChlI C-terminal HYG84_13850 PF02021 Uncharacterised protein family UPF0102 HYG84_13855 PF01351 Ribonuclease HII HYG84_13860 PF01926 50S ribosome-binding GTPase HYG84_13865 PF01245 Ribosomal protein L19 HYG84_13870 PF01746 tRNA (Guanine-1)-methyltransferase HYG84_13875 PF05239 PRC-barrel domain HYG84_13875 PF01782 RimM N-terminal domain HYG84_13885 PF00886 Ribosomal protein S16 HYG84_13890 PF02978 Signal peptide binding domain HYG84_13890 PF00448 SRP54-type protein, GTPase domain HYG84_13890 PF02881 SRP54-type protein, helical bundle domain HYG84_13895 PF04297 Putative helix-turn-helix protein, YlxM / p13 like HYG84_13900 PF00448 SRP54-type protein, GTPase domain HYG84_13900 PF02881 SRP54-type protein, helical bundle domain HYG84_13905 PF06470 SMC proteins Flexible Hinge Domain HYG84_13905 PF02463 RecF/RecN/SMC N terminal domain HYG84_13910 PF16199 Radical_SAM C-terminal domain HYG84_13910 PF00583 Acetyltransferase (GNAT) family HYG84_13910 PF04055 Radical SAM superfamily HYG84_13915 PF00035 Double-stranded RNA binding motif HYG84_13915 PF14622 Ribonuclease-III-like HYG84_13920 PF00109 Beta-ketoacyl synthase, N-terminal domain HYG84_13920 PF02801 Beta-ketoacyl synthase, C-terminal domain HYG84_13925 PF00550 Phosphopantetheine attachment site HYG84_13935 PF00698 Acyl transferase domain HYG84_13940 PF03060 Nitronate monooxygenase HYG84_13945 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HYG84_13945 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HYG84_13950 PF02504 Fatty acid synthesis protein HYG84_13960 PF01783 Ribosomal L32p protein family HYG84_13965 PF02620 Large ribosomal RNA subunit accumulation protein YceD HYG84_13970 PF00871 Acetokinase family HYG84_13975 PF05636 HIGH Nucleotidyl Transferase HYG84_13980 PF07670 Nucleoside recognition HYG84_13990 PF01467 Cytidylyltransferase-like HYG84_14000 PF00270 DEAD/DEAH box helicase HYG84_14000 PF17191 RecG wedge domain HYG84_14000 PF00271 Helicase conserved C-terminal domain HYG84_14005 PF13684 Dihydroxyacetone kinase family HYG84_14005 PF02734 DAK2 domain HYG84_14010 PF03780 Asp23 family, cell envelope-related function HYG84_14015 PF00830 Ribosomal L28 family HYG84_14030 PF00834 Ribulose-phosphate 3 epimerase family HYG84_14035 PF16745 RsgA N-terminal domain HYG84_14035 PF03193 RsgA GTPase HYG84_14040 PF03793 PASTA domain HYG84_14040 PF00069 Protein kinase domain HYG84_14050 PF04055 Radical SAM superfamily HYG84_14055 PF01189 16S rRNA methyltransferase RsmB/F HYG84_14055 PF01029 NusB family HYG84_14060 PF04298 Putative neutral zinc metallopeptidase HYG84_14070 PF02911 Formyl transferase, C-terminal domain HYG84_14070 PF00551 Formyl transferase HYG84_14075 PF01327 Polypeptide deformylase HYG84_14080 PF00271 Helicase conserved C-terminal domain HYG84_14080 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HYG84_14080 PF18074 Primosomal protein N C-terminal domain HYG84_14080 PF04851 Type III restriction enzyme, res subunit HYG84_14080 PF17764 3′ DNA-binding domain (3′BD) HYG84_14085 PF04127 DNA / pantothenate metabolism flavoprotein HYG84_14085 PF02441 Flavoprotein HYG84_14090 PF01192 RNA polymerase Rpb6 HYG84_14095 PF00625 Guanylate kinase HYG84_14100 PF04025 Domain of unknown function (DUF370) HYG84_14105 PF08340 Domain of unknown function (DUF1732) HYG84_14105 PF03755 YicC-like family, N-terminal region HYG84_14110 PF01678 Diaminopimelate epimerase HYG84_14115 PF05670 NFACT protein RNA binding domain HYG84_14125 PF00156 Phosphoribosyl transferase domain HYG84_14130 PF00849 RNA pseudouridylate synthase HYG84_14130 PF01479 S4 domain HYG84_14135 PF01252 Signal peptidase (SPase) II HYG84_14140 PF01258 Prokaryotic dksA/traR C4-type zinc finger HYG84_14150 PF00793 DAHP synthetase I family HYG84_14150 PF18152 DAHP synthase ferredoxin-like domain HYG84_14155 PF01048 Phosphorylase superfamily HYG84_14160 PF05103 DivIVA protein HYG84_14165 PF17774 Putative RNA-binding domain in YlmH HYG84_14165 PF01479 S4 domain HYG84_14175 PF04472 Cell division protein SepF HYG84_14180 PF01168 Alanine racemase, N-terminal domain HYG84_14195 PF16123 Hydroxyacylglutathione hydrolase C-terminus HYG84_14195 PF00753 Metallo-beta-lactamase superfamily HYG84_14215 PF04073 Aminoacyl-tRNA editing domain HYG84_14220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYG84_14220 PF03466 LysR substrate binding domain HYG84_14260 PF00589 Phage integrase family HYG84_14260 PF02899 Phage integrase, N-terminal SAM-like domain HYG84_14270 PF09547 Stage IV sporulation protein A (spore_IV_A) HYG84_14275 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HYG84_14275 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HYG84_14280 PF02660 Glycerol-3-phosphate acyltransferase HYG84_14285 PF01926 50S ribosome-binding GTPase HYG84_14285 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HYG84_14310 PF14045 YIEGIA protein HYG84_14325 PF00989 PAS fold HYG84_14325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_14325 PF00512 His Kinase A (phospho-acceptor) domain HYG84_14325 PF16736 Single Cache-like HYG84_14330 PF00072 Response regulator receiver domain HYG84_14330 PF00486 Transcriptional regulatory protein, C terminal HYG84_14335 PF02578 Multi-copper polyphenol oxidoreductase laccase HYG84_14340 PF03477 ATP cone domain HYG84_14345 PF05239 PRC-barrel domain HYG84_14350 PF04542 Sigma-70 region 2 HYG84_14350 PF04539 Sigma-70 region 3 HYG84_14350 PF04545 Sigma-70, region 4 HYG84_14355 PF04542 Sigma-70 region 2 HYG84_14355 PF04545 Sigma-70, region 4 HYG84_14360 PF03419 Sporulation factor SpoIIGA HYG84_14365 PF12327 FtsZ family, C-terminal domain HYG84_14365 PF00091 Tubulin/FtsZ family, GTPase domain HYG84_14370 PF06947 Protein of unknown function (DUF1290) HYG84_14385 PF08478 POTRA domain, FtsQ-type HYG84_14390 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HYG84_14395 PF04101 Glycosyltransferase family 28 C-terminal domain HYG84_14395 PF03033 Glycosyltransferase family 28 N-terminal domain HYG84_14400 PF01098 Cell cycle protein HYG84_14405 PF02875 Mur ligase family, glutamate ligase domain HYG84_14405 PF08245 Mur ligase middle domain HYG84_14410 PF00953 Glycosyl transferase family 4 HYG84_14415 PF01225 Mur ligase family, catalytic domain HYG84_14415 PF02875 Mur ligase family, glutamate ligase domain HYG84_14415 PF08245 Mur ligase middle domain HYG84_14420 PF01225 Mur ligase family, catalytic domain HYG84_14420 PF08245 Mur ligase middle domain HYG84_14420 PF02875 Mur ligase family, glutamate ligase domain HYG84_14425 PF00905 Penicillin binding protein transpeptidase domain HYG84_14425 PF03717 Penicillin-binding Protein dimerisation domain HYG84_14425 PF03793 PASTA domain HYG84_14435 PF01795 MraW methylase family HYG84_14440 PF02381 MraZ protein, putative antitoxin-like HYG84_14450 PF01790 Prolipoprotein diacylglyceryl transferase HYG84_14455 PF00675 Insulinase (Peptidase family M16) HYG84_14455 PF05193 Peptidase M16 inactive domain HYG84_14460 PF05193 Peptidase M16 inactive domain HYG84_14475 PF01926 50S ribosome-binding GTPase HYG84_14475 PF06071 Protein of unknown function (DUF933) HYG84_14480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HYG84_14480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HYG84_14495 PF01791 DeoC/LacD family aldolase HYG84_14500 PF06130 Phosphate propanoyltransferase HYG84_14505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HYG84_14510 PF01761 3-dehydroquinate synthase HYG84_14515 PF01264 Chorismate synthase HYG84_14535 PF00156 Phosphoribosyl transferase domain HYG84_14540 PF01923 Cobalamin adenosyltransferase HYG84_14545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HYG84_14545 PF00005 ABC transporter HYG84_14550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HYG84_14550 PF00005 ABC transporter HYG84_14555 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_14555 PF12911 N-terminal TM domain of oligopeptide transport permease C HYG84_14560 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_14565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HYG84_14570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HYG84_14570 PF00005 ABC transporter HYG84_14575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HYG84_14575 PF00005 ABC transporter HYG84_14580 PF12911 N-terminal TM domain of oligopeptide transport permease C HYG84_14580 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_14585 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_14590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HYG84_14595 PF01575 MaoC like domain HYG84_14605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HYG84_14605 PF00005 ABC transporter HYG84_14610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HYG84_14610 PF00005 ABC transporter HYG84_14615 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_14615 PF12911 N-terminal TM domain of oligopeptide transport permease C HYG84_14620 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_14625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HYG84_14650 PF07694 5TMR of 5TMR-LYT HYG84_14650 PF13492 GAF domain HYG84_14650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_14650 PF06580 Histidine kinase HYG84_14655 PF04397 LytTr DNA-binding domain HYG84_14655 PF00072 Response regulator receiver domain HYG84_14660 PF02554 Carbon starvation protein CstA HYG84_14670 PF03551 Transcriptional regulator PadR-like family HYG84_14685 PF00144 Beta-lactamase HYG84_14705 PF01784 NIF3 (NGG1p interacting factor 3) HYG84_14710 PF04816 tRNA (adenine(22)-N(1))-methyltransferase HYG84_14720 PF04545 Sigma-70, region 4 HYG84_14720 PF04539 Sigma-70 region 3 HYG84_14720 PF00140 Sigma-70 factor, region 1.2 HYG84_14720 PF03979 Sigma-70 factor, region 1.1 HYG84_14720 PF04542 Sigma-70 region 2 HYG84_14725 PF10410 DnaB-helicase binding domain of primase HYG84_14725 PF08275 DNA primase catalytic core, N-terminal domain HYG84_14725 PF01807 CHC2 zinc finger HYG84_14730 PF13286 Phosphohydrolase-associated domain HYG84_14730 PF01966 HD domain HYG84_14745 PF03551 Transcriptional regulator PadR-like family HYG84_14750 PF00158 Sigma-54 interaction domain HYG84_14750 PF13426 PAS domain HYG84_14750 PF02954 Bacterial regulatory protein, Fis family HYG84_14755 PF01042 Endoribonuclease L-PSP HYG84_14765 PF01042 Endoribonuclease L-PSP HYG84_14770 PF00375 Sodium:dicarboxylate symporter family HYG84_14775 PF00155 Aminotransferase class I and II HYG84_14780 PF03313 Serine dehydratase alpha chain HYG84_14795 PF02645 Uncharacterised protein, DegV family COG1307 HYG84_14820 PF01553 Acyltransferase HYG84_14825 PF00291 Pyridoxal-phosphate dependent enzyme HYG84_14830 PF01381 Helix-turn-helix HYG84_14830 PF07883 Cupin domain HYG84_14835 PF00890 FAD binding domain HYG84_14835 PF04205 FMN-binding domain HYG84_14835 PF03358 NADPH-dependent FMN reductase HYG84_14850 PF00072 Response regulator receiver domain HYG84_14850 PF00486 Transcriptional regulatory protein, C terminal HYG84_14855 PF00672 HAMP domain HYG84_14855 PF00989 PAS fold HYG84_14855 PF00512 His Kinase A (phospho-acceptor) domain HYG84_14855 PF18698 Histidine kinase sensor domain HYG84_14855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_14885 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HYG84_14885 PF02896 PEP-utilising enzyme, TIM barrel domain HYG84_14885 PF00391 PEP-utilising enzyme, mobile domain HYG84_14890 PF03618 Kinase/pyrophosphorylase HYG84_14895 PF08279 HTH domain HYG84_14895 PF00571 CBS domain HYG84_14900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HYG84_14900 PF03129 Anticodon binding domain HYG84_14905 PF00889 Elongation factor TS HYG84_14910 PF11967 Recombination protein O N terminal HYG84_14910 PF02565 Recombination protein O C terminal HYG84_14920 PF01926 50S ribosome-binding GTPase HYG84_14920 PF07650 KH domain HYG84_14925 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HYG84_14930 PF17479 Protein of unknown function (DUF3048) C-terminal domain HYG84_14930 PF11258 Protein of unknown function (DUF3048) N-terminal domain HYG84_14940 PF01219 Prokaryotic diacylglycerol kinase HYG84_14945 PF02130 Uncharacterized protein family UPF0054 HYG84_14950 PF01966 HD domain HYG84_14950 PF07697 7TM-HD extracellular HYG84_14950 PF07698 7TM receptor with intracellular HD hydrolase HYG84_14955 PF02562 PhoH-like protein HYG84_14960 PF06898 Putative stage IV sporulation protein YqfD HYG84_14965 PF07873 YabP family HYG84_14975 PF01348 Type II intron maturase HYG84_14975 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HYG84_14990 PF12127 SigmaW regulon antibacterial HYG84_14995 PF01957 NfeD-like C-terminal, partner-binding HYG84_14995 PF01972 Serine dehydrogenase proteinase HYG84_15005 PF09424 Yqey-like protein HYG84_15010 PF01165 Ribosomal protein S21 HYG84_15015 PF01230 HIT domain HYG84_15020 PF00919 Uncharacterized protein family UPF0004 HYG84_15020 PF01938 TRAM domain HYG84_15020 PF04055 Radical SAM superfamily HYG84_15030 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HYG84_15030 PF17854 FtsK alpha domain HYG84_15030 PF09397 Ftsk gamma domain HYG84_15030 PF01580 FtsK/SpoIIIE family HYG84_15230 PF01507 Phosphoadenosine phosphosulfate reductase family HYG84_15310 PF02796 Helix-turn-helix domain of resolvase HYG84_15310 PF00239 Resolvase, N terminal domain HYG84_15315 PF04452 RNA methyltransferase HYG84_15325 PF00226 DnaJ domain HYG84_15325 PF00684 DnaJ central domain HYG84_15325 PF01556 DnaJ C terminal domain HYG84_15330 PF00012 Hsp70 protein HYG84_15335 PF01025 GrpE HYG84_15340 PF01628 HrcA protein C terminal domain HYG84_15345 PF06969 HemN C-terminal domain HYG84_15345 PF04055 Radical SAM superfamily HYG84_15350 PF06421 GTP-binding protein LepA C-terminus HYG84_15350 PF03144 Elongation factor Tu domain 2 HYG84_15350 PF00679 Elongation factor G C-terminus HYG84_15350 PF00009 Elongation factor Tu GTP binding domain HYG84_15365 PF03418 Germination protease HYG84_15370 PF01649 Ribosomal protein S20 HYG84_15380 PF03772 Competence protein HYG84_15380 PF00753 Metallo-beta-lactamase superfamily HYG84_15380 PF13567 Domain of unknown function (DUF4131) HYG84_15400 PF03772 Competence protein HYG84_15400 PF13567 Domain of unknown function (DUF4131) HYG84_15400 PF00753 Metallo-beta-lactamase superfamily HYG84_15425 PF00270 DEAD/DEAH box helicase HYG84_15425 PF00271 Helicase conserved C-terminal domain HYG84_15430 PF02223 Thymidylate kinase HYG84_15435 PF00171 Aldehyde dehydrogenase family HYG84_15445 PF02687 FtsX-like permease family HYG84_15445 PF12704 MacB-like periplasmic core domain HYG84_15445 PF00005 ABC transporter HYG84_15460 PF08361 MAATS-type transcriptional repressor, C-terminal region HYG84_15460 PF00440 Bacterial regulatory proteins, tetR family HYG84_15470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HYG84_15475 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HYG84_15475 PF01464 Transglycosylase SLT domain HYG84_15480 PF01121 Dephospho-CoA kinase HYG84_15485 PF00476 DNA polymerase family A HYG84_15485 PF01367 5'-3' exonuclease, C-terminal SAM fold HYG84_15485 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HYG84_15495 PF04542 Sigma-70 region 2 HYG84_15495 PF08281 Sigma-70, region 4 HYG84_15510 PF04607 Region found in RelA / SpoT proteins HYG84_15520 PF01545 Cation efflux family HYG84_15520 PF16916 Dimerisation domain of Zinc Transporter HYG84_15525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYG84_15525 PF03466 LysR substrate binding domain HYG84_15530 PF02645 Uncharacterised protein, DegV family COG1307 HYG84_15535 PF00196 Bacterial regulatory proteins, luxR family HYG84_15535 PF00072 Response regulator receiver domain HYG84_15540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_15540 PF07730 Histidine kinase HYG84_15540 PF05384 Sensor protein DegS HYG84_15550 PF01584 CheW-like domain HYG84_15555 PF05979 Bacterial protein of unknown function (DUF896) HYG84_15570 PF01979 Amidohydrolase family HYG84_15575 PF00221 Aromatic amino acid lyase HYG84_15580 PF00990 Diguanylate cyclase, GGDEF domain HYG84_15585 PF01047 MarR family HYG84_15590 PF00781 Diacylglycerol kinase catalytic domain HYG84_15595 PF00155 Aminotransferase class I and II HYG84_15605 PF00664 ABC transporter transmembrane region HYG84_15605 PF00005 ABC transporter HYG84_15610 PF00664 ABC transporter transmembrane region HYG84_15610 PF00005 ABC transporter HYG84_15625 PF00990 Diguanylate cyclase, GGDEF domain HYG84_15625 PF08448 PAS fold HYG84_15630 PF01943 Polysaccharide biosynthesis protein HYG84_15630 PF14667 Polysaccharide biosynthesis C-terminal domain HYG84_15650 PF17862 AAA+ lid domain HYG84_15650 PF01434 Peptidase family M41 HYG84_15650 PF00004 ATPase family associated with various cellular activities (AAA) HYG84_15665 PF01554 MatE HYG84_15670 PF00849 RNA pseudouridylate synthase HYG84_15670 PF01479 S4 domain HYG84_15675 PF01513 ATP-NAD kinase HYG84_15685 PF00384 Molybdopterin oxidoreductase HYG84_15685 PF01568 Molydopterin dinucleotide binding domain HYG84_15685 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HYG84_15690 PF12800 4Fe-4S binding domain HYG84_15690 PF13247 4Fe-4S dicluster domain HYG84_15710 PF01432 Peptidase family M3 HYG84_15710 PF08439 Oligopeptidase F HYG84_15715 PF00375 Sodium:dicarboxylate symporter family HYG84_15720 PF14537 Cytochrome c3 HYG84_15720 PF00890 FAD binding domain HYG84_15735 PF03116 NQR2, RnfD, RnfE family HYG84_15740 PF04205 FMN-binding domain HYG84_15745 PF02508 Rnf-Nqr subunit, membrane protein HYG84_15750 PF02508 Rnf-Nqr subunit, membrane protein HYG84_15755 PF00970 Oxidoreductase FAD-binding domain HYG84_15755 PF00111 2Fe-2S iron-sulfur cluster binding domain HYG84_15755 PF00175 Oxidoreductase NAD-binding domain HYG84_15760 PF01113 Dihydrodipicolinate reductase, N-terminus HYG84_15760 PF05173 Dihydrodipicolinate reductase, C-terminus HYG84_15765 PF00701 Dihydrodipicolinate synthetase family HYG84_15770 PF01118 Semialdehyde dehydrogenase, NAD binding domain HYG84_15770 PF02774 Semialdehyde dehydrogenase, dimerisation domain HYG84_15775 PF01471 Putative peptidoglycan binding domain HYG84_15775 PF07486 Cell Wall Hydrolase HYG84_15780 PF00457 Glycosyl hydrolases family 11 HYG84_15780 PF03422 Carbohydrate binding module (family 6) HYG84_15780 PF01522 Polysaccharide deacetylase HYG84_15785 PF01070 FMN-dependent dehydrogenase HYG84_15790 PF02245 Methylpurine-DNA glycosylase (MPG) HYG84_15805 PF00881 Nitroreductase family HYG84_15810 PF00300 Histidine phosphatase superfamily (branch 1) HYG84_15815 PF03831 PhnA domain HYG84_15815 PF08274 PhnA Zinc-Ribbon HYG84_15825 PF03772 Competence protein HYG84_15825 PF13567 Domain of unknown function (DUF4131) HYG84_15825 PF00753 Metallo-beta-lactamase superfamily HYG84_15830 PF00672 HAMP domain HYG84_15830 PF02743 Cache domain HYG84_15830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_15835 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HYG84_15835 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HYG84_15865 PF02308 MgtC family HYG84_15875 PF04324 BFD-like [2Fe-2S] binding domain HYG84_15875 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYG84_15880 PF01266 FAD dependent oxidoreductase HYG84_15890 PF13344 Haloacid dehalogenase-like hydrolase HYG84_15895 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HYG84_15905 PF03480 Bacterial extracellular solute-binding protein, family 7 HYG84_15955 PF01979 Amidohydrolase family HYG84_15955 PF13382 Adenine deaminase C-terminal domain HYG84_16075 PF00730 HhH-GPD superfamily base excision DNA repair protein HYG84_16080 PF01381 Helix-turn-helix HYG84_16095 PF00145 C-5 cytosine-specific DNA methylase HYG84_16100 PF00145 C-5 cytosine-specific DNA methylase HYG84_16140 PF00436 Single-strand binding protein family HYG84_16145 PF01695 IstB-like ATP binding protein HYG84_16175 PF01381 Helix-turn-helix HYG84_16185 PF00589 Phage integrase family HYG84_16185 PF14659 Phage integrase, N-terminal SAM-like domain HYG84_16195 PF15975 Flotillin HYG84_16195 PF01145 SPFH domain / Band 7 family HYG84_16210 PF04024 PspC domain HYG84_16220 PF00271 Helicase conserved C-terminal domain HYG84_16220 PF00176 SNF2 family N-terminal domain HYG84_16220 PF12419 SNF2 Helicase protein HYG84_16225 PF07670 Nucleoside recognition HYG84_16230 PF01171 PP-loop family HYG84_16235 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYG84_16235 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HYG84_16245 PF01047 MarR family HYG84_16250 PF01751 Toprim domain HYG84_16250 PF01131 DNA topoisomerase HYG84_16270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYG84_16270 PF03466 LysR substrate binding domain HYG84_16275 PF04143 Sulphur transport HYG84_16285 PF04143 Sulphur transport HYG84_16290 PF10417 C-terminal domain of 1-Cys peroxiredoxin HYG84_16290 PF00578 AhpC/TSA family HYG84_16295 PF13538 UvrD-like helicase C-terminal domain HYG84_16300 PF18665 Tetracyclin repressor-like, C-terminal domain HYG84_16300 PF00440 Bacterial regulatory proteins, tetR family HYG84_16305 PF03466 LysR substrate binding domain HYG84_16305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYG84_16310 PF00271 Helicase conserved C-terminal domain HYG84_16310 PF00270 DEAD/DEAH box helicase HYG84_16310 PF16124 RecQ zinc-binding HYG84_16310 PF09382 RQC domain HYG84_16310 PF00570 HRDC domain HYG84_16320 PF00005 ABC transporter HYG84_16325 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_16330 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_16335 PF12849 PBP superfamily domain HYG84_16340 PF00209 Sodium:neurotransmitter symporter family HYG84_16345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HYG84_16350 PF02571 Precorrin-6x reductase CbiJ/CobK HYG84_16355 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HYG84_16360 PF11760 Cobalamin synthesis G N-terminal HYG84_16360 PF11761 Cobalamin biosynthesis central region HYG84_16360 PF01890 Cobalamin synthesis G C-terminus HYG84_16365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HYG84_16370 PF05175 Methyltransferase small domain HYG84_16375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HYG84_16380 PF01888 CbiD HYG84_16385 PF02570 Precorrin-8X methylmutase HYG84_16390 PF00005 ABC transporter HYG84_16395 PF01032 FecCD transport family HYG84_16400 PF01497 Periplasmic binding protein HYG84_16405 PF00512 His Kinase A (phospho-acceptor) domain HYG84_16405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_16415 PF00005 ABC transporter HYG84_16420 PF00486 Transcriptional regulatory protein, C terminal HYG84_16420 PF00072 Response regulator receiver domain HYG84_16435 PF00291 Pyridoxal-phosphate dependent enzyme HYG84_16440 PF10990 Protein of unknown function (DUF2809) HYG84_16445 PF01588 Putative tRNA binding domain HYG84_16445 PF09334 tRNA synthetases class I (M) HYG84_16445 PF08264 Anticodon-binding domain of tRNA HYG84_16450 PF04951 D-aminopeptidase HYG84_16455 PF09334 tRNA synthetases class I (M) HYG84_16465 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HYG84_16465 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HYG84_16470 PF00230 Major intrinsic protein HYG84_16480 PF08241 Methyltransferase domain HYG84_16485 PF13393 Histidyl-tRNA synthetase HYG84_16485 PF03129 Anticodon binding domain HYG84_16490 PF00795 Carbon-nitrogen hydrolase HYG84_16500 PF12631 MnmE helical domain HYG84_16500 PF10396 GTP-binding protein TrmE N-terminus HYG84_16500 PF01926 50S ribosome-binding GTPase HYG84_16510 PF04055 Radical SAM superfamily HYG84_16510 PF06968 Biotin and Thiamin Synthesis associated domain HYG84_16515 PF02906 Iron only hydrogenase large subunit, C-terminal domain HYG84_16515 PF02256 Iron hydrogenase small subunit HYG84_16515 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HYG84_16515 PF00037 4Fe-4S binding domain HYG84_16520 PF00037 4Fe-4S binding domain HYG84_16520 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HYG84_16520 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HYG84_16530 PF13302 Acetyltransferase (GNAT) domain HYG84_16535 PF13427 Domain of unknown function (DUF4111) HYG84_16535 PF18765 Polymerase beta, Nucleotidyltransferase HYG84_16540 PF01244 Membrane dipeptidase (Peptidase family M19) HYG84_16545 PF00488 MutS domain V HYG84_16545 PF05190 MutS family domain IV HYG84_16545 PF01624 MutS domain I HYG84_16545 PF05188 MutS domain II HYG84_16545 PF05192 MutS domain III HYG84_16560 PF02146 Sir2 family HYG84_16565 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HYG84_16570 PF00282 Pyridoxal-dependent decarboxylase conserved domain HYG84_16575 PF02126 Phosphotriesterase family HYG84_16580 PF13538 UvrD-like helicase C-terminal domain HYG84_16590 PF01668 SmpB protein HYG84_16595 PF00575 S1 RNA binding domain HYG84_16595 PF00773 RNB domain HYG84_16595 PF08206 Ribonuclease B OB domain HYG84_16595 PF17876 Cold shock domain HYG84_16605 PF03030 Inorganic H+ pyrophosphatase HYG84_16610 PF03840 Preprotein translocase SecG subunit HYG84_16615 PF03952 Enolase, N-terminal domain HYG84_16615 PF00113 Enolase, C-terminal TIM barrel domain HYG84_16620 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HYG84_16620 PF01676 Metalloenzyme superfamily HYG84_16625 PF00121 Triosephosphate isomerase HYG84_16630 PF00162 Phosphoglycerate kinase HYG84_16635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HYG84_16635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HYG84_16640 PF04198 Putative sugar-binding domain HYG84_16645 PF00309 Sigma-54 factor, Activator interacting domain (AID) HYG84_16645 PF04963 Sigma-54 factor, core binding domain HYG84_16645 PF04552 Sigma-54, DNA binding domain HYG84_16650 PF02653 Branched-chain amino acid transport system / permease component HYG84_16655 PF02653 Branched-chain amino acid transport system / permease component HYG84_16660 PF00005 ABC transporter HYG84_16665 PF04055 Radical SAM superfamily HYG84_16670 PF11230 Protein of unknown function (DUF3029) HYG84_16675 PF02608 ABC transporter substrate-binding protein PnrA-like HYG84_16680 PF02504 Fatty acid synthesis protein HYG84_16685 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HYG84_16700 PF09338 Glycine/sarcosine/betaine reductase component B subunits HYG84_16705 PF00085 Thioredoxin HYG84_16710 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYG84_16720 PF02645 Uncharacterised protein, DegV family COG1307 HYG84_16725 PF00588 SpoU rRNA Methylase family HYG84_16730 PF00392 Bacterial regulatory proteins, gntR family HYG84_16730 PF00155 Aminotransferase class I and II HYG84_16735 PF00005 ABC transporter HYG84_16750 PF12848 ABC transporter HYG84_16750 PF00005 ABC transporter HYG84_16765 PF00171 Aldehyde dehydrogenase family HYG84_16775 PF02574 Homocysteine S-methyltransferase HYG84_16775 PF02219 Methylenetetrahydrofolate reductase HYG84_16780 PF00085 Thioredoxin HYG84_16800 PF03466 LysR substrate binding domain HYG84_16800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HYG84_16810 PF02659 Putative manganese efflux pump HYG84_16815 PF00005 ABC transporter HYG84_16835 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HYG84_16835 PF02256 Iron hydrogenase small subunit HYG84_16835 PF02906 Iron only hydrogenase large subunit, C-terminal domain HYG84_16835 PF00037 4Fe-4S binding domain HYG84_16840 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HYG84_16840 PF00037 4Fe-4S binding domain HYG84_16840 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HYG84_16850 PF01479 S4 domain HYG84_16850 PF00579 tRNA synthetases class I (W and Y) HYG84_16855 PF02872 5'-nucleotidase, C-terminal domain HYG84_16855 PF00149 Calcineurin-like phosphoesterase HYG84_16865 PF01475 Ferric uptake regulator family HYG84_16870 PF00005 ABC transporter HYG84_16875 PF01032 FecCD transport family HYG84_16880 PF01497 Periplasmic binding protein HYG84_16890 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HYG84_16890 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HYG84_16900 PF04294 VanW like protein HYG84_16905 PF02491 SHS2 domain inserted in FTSA HYG84_16910 PF00633 Helix-hairpin-helix motif HYG84_16910 PF10576 Iron-sulfur binding domain of endonuclease III HYG84_16910 PF00730 HhH-GPD superfamily base excision DNA repair protein HYG84_16915 PF00873 AcrB/AcrD/AcrF family HYG84_16920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HYG84_16925 PF00155 Aminotransferase class I and II HYG84_16930 PF05362 Lon protease (S16) C-terminal proteolytic domain HYG84_16930 PF13654 AAA domain HYG84_16935 PF08331 Domain of unknown function (DUF1730) HYG84_16940 PF10502 Signal peptidase, peptidase S26 HYG84_16965 PF01520 N-acetylmuramoyl-L-alanine amidase HYG84_17005 PF04865 Baseplate J-like protein HYG84_17100 PF00919 Uncharacterized protein family UPF0004 HYG84_17100 PF04055 Radical SAM superfamily HYG84_17100 PF01938 TRAM domain HYG84_17110 PF03592 Terminase small subunit HYG84_17110 PF10668 Phage terminase small subunit HYG84_17130 PF00012 Hsp70 protein HYG84_17160 PF01555 DNA methylase HYG84_17205 PF00436 Single-strand binding protein family HYG84_17260 PF03374 Phage antirepressor protein KilAC domain HYG84_17260 PF09669 Phage regulatory protein Rha (Phage_pRha) HYG84_17285 PF07508 Recombinase HYG84_17285 PF00239 Resolvase, N terminal domain HYG84_17285 PF13408 Recombinase zinc beta ribbon domain HYG84_17305 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HYG84_17320 PF01022 Bacterial regulatory protein, arsR family HYG84_17325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HYG84_17325 PF07992 Pyridine nucleotide-disulphide oxidoreductase HYG84_17350 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) HYG84_17350 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 HYG84_17355 PF00072 Response regulator receiver domain HYG84_17355 PF04397 LytTr DNA-binding domain HYG84_17360 PF07694 5TMR of 5TMR-LYT HYG84_17360 PF13492 GAF domain HYG84_17360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_17360 PF06580 Histidine kinase HYG84_17365 PF00266 Aminotransferase class-V HYG84_17375 PF04172 LrgB-like family HYG84_17380 PF03788 LrgA family HYG84_17390 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HYG84_17395 PF00528 Binding-protein-dependent transport system inner membrane component HYG84_17400 PF00005 ABC transporter HYG84_17400 PF00571 CBS domain HYG84_17405 PF12802 MarR family HYG84_17425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HYG84_17425 PF00205 Thiamine pyrophosphate enzyme, central domain HYG84_17425 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HYG84_17435 PF01293 Phosphoenolpyruvate carboxykinase HYG84_17445 PF00005 ABC transporter HYG84_17450 PF00672 HAMP domain HYG84_17450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_17450 PF00512 His Kinase A (phospho-acceptor) domain HYG84_17455 PF00072 Response regulator receiver domain HYG84_17455 PF00486 Transcriptional regulatory protein, C terminal HYG84_17465 PF13478 XdhC Rossmann domain HYG84_17465 PF02625 XdhC and CoxI family HYG84_17470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_17470 PF00672 HAMP domain HYG84_17470 PF02743 Cache domain HYG84_17475 PF02515 CoA-transferase family III HYG84_17480 PF00696 Amino acid kinase family HYG84_17485 PF00795 Carbon-nitrogen hydrolase HYG84_17490 PF04199 Putative cyclase HYG84_17495 PF06545 Protein of unknown function (DUF1116) HYG84_17500 PF00549 CoA-ligase HYG84_17500 PF02629 CoA binding domain HYG84_17525 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HYG84_17525 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HYG84_17535 PF00270 DEAD/DEAH box helicase HYG84_17535 PF00271 Helicase conserved C-terminal domain HYG84_17535 PF17191 RecG wedge domain HYG84_17560 PF02342 TerD domain HYG84_17750 PF00293 NUDIX domain HYG84_17770 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) HYG84_17775 PF01966 HD domain HYG84_17775 PF11871 Domain of unknown function (DUF3391) HYG84_17820 PF05191 Adenylate kinase, active site lid HYG84_18045 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) HYG84_18045 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 HYG84_18105 PF00145 C-5 cytosine-specific DNA methylase HYG84_18110 PF07516 SecA Wing and Scaffold domain HYG84_18110 PF07517 SecA DEAD-like domain HYG84_18110 PF02810 SEC-C motif HYG84_18110 PF01043 SecA preprotein cross-linking domain HYG84_18120 PF03167 Uracil DNA glycosylase superfamily HYG84_18155 PF01351 Ribonuclease HII HYG84_18240 PF13291 ACT domain HYG84_18240 PF02824 TGS domain HYG84_18240 PF04607 Region found in RelA / SpoT proteins HYG84_18255 PF04002 RadC-like JAB domain HYG84_18265 PF02899 Phage integrase, N-terminal SAM-like domain HYG84_18265 PF00589 Phage integrase family HYG84_18270 PF02223 Thymidylate kinase HYG84_18280 PF07963 Prokaryotic N-terminal methylation motif HYG84_18280 PF08334 Type II secretion system (T2SS), protein G HYG84_18335 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) HYG84_18350 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family HYG84_18375 PF01368 DHH family HYG84_18375 PF10141 Single-strand DNA-specific exonuclease, C terminal domain HYG84_18375 PF17768 RecJ OB domain HYG84_18375 PF02272 DHHA1 domain HYG84_18395 PF00154 recA bacterial DNA recombination protein HYG84_18430 PF00072 Response regulator receiver domain HYG84_18430 PF04397 LytTr DNA-binding domain HYG84_18470 PF08206 Ribonuclease B OB domain HYG84_18470 PF17876 Cold shock domain HYG84_18470 PF00773 RNB domain HYG84_18470 PF00575 S1 RNA binding domain HYG84_18475 PF02743 Cache domain HYG84_18475 PF00672 HAMP domain HYG84_18475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HYG84_18640 PF08278 DNA primase DnaG DnaB-binding HYG84_18640 PF10410 DnaB-helicase binding domain of primase HYG84_18640 PF08275 DNA primase catalytic core, N-terminal domain HYG84_18640 PF01807 CHC2 zinc finger HYG84_18670 PF02540 NAD synthase HYG84_18690 PF00293 NUDIX domain HYG84_18715 PF00580 UvrD/REP helicase N-terminal domain HYG84_18715 PF13361 UvrD-like helicase C-terminal domain HYG84_18720 PF00145 C-5 cytosine-specific DNA methylase HYG84_18780 PF00265 Thymidine kinase HYG84_18805 PF13538 UvrD-like helicase C-terminal domain HYG84_18805 PF14490 Helix-hairpin-helix containing domain HYG84_18805 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain HYG84_18825 PF15608 PELOTA RNA binding domain HYG84_18825 PF11202 Phosphoribosyl transferase (PRTase) HYG84_18835 PF02342 TerD domain HYG84_18840 PF02342 TerD domain HYG84_18850 PF00689 Cation transporting ATPase, C-terminus HYG84_18850 PF00690 Cation transporter/ATPase, N-terminus HYG84_18870 PF10502 Signal peptidase, peptidase S26 HYG84_18910 PF08334 Type II secretion system (T2SS), protein G HYG84_18910 PF07963 Prokaryotic N-terminal methylation motif HYG84_18915 PF12791 Anti-sigma factor N-terminus HYG84_18915 PF07691 PA14 domain HYG84_18965 PF00437 Type II/IV secretion system protein HYG84_18995 PF00963 Cohesin domain HYG84_18995 PF00395 S-layer homology domain HYG84_19095 PF01751 Toprim domain HYG84_19095 PF01131 DNA topoisomerase HYG84_19155 PF00437 Type II/IV secretion system protein HYG84_19200 PF00436 Single-strand binding protein family HYG84_19235 PF01336 OB-fold nucleic acid binding domain HYG84_19235 PF02811 PHP domain HYG84_19235 PF14579 Helix-hairpin-helix motif HYG84_19235 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HYG84_19235 PF07733 Bacterial DNA polymerase III alpha NTPase domain HYG84_19250 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HYG84_19255 PF00625 Guanylate kinase HYG84_19260 PF08471 Class II vitamin B12-dependent ribonucleotide reductase HYG84_19260 PF02867 Ribonucleotide reductase, barrel domain HYG84_19280 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HYG84_19310 PF01381 Helix-turn-helix HYG84_19310 PF00717 Peptidase S24-like HYG84_19410 PF12826 Helix-hairpin-helix motif HYG84_19410 PF00533 BRCA1 C Terminus (BRCT) domain HYG84_19410 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HYG84_19410 PF03120 NAD-dependent DNA ligase OB-fold domain HYG84_19410 PF01653 NAD-dependent DNA ligase adenylation domain HYG84_19415 PF00204 DNA gyrase B HYG84_19415 PF01751 Toprim domain HYG84_19415 PF00986 DNA gyrase B subunit, carboxyl terminus HYG84_19415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_19425 PF03989 DNA gyrase C-terminal domain, beta-propeller HYG84_19425 PF00521 DNA gyrase/topoisomerase IV, subunit A HYG84_19455 PF07516 SecA Wing and Scaffold domain HYG84_19455 PF01043 SecA preprotein cross-linking domain HYG84_19455 PF07517 SecA DEAD-like domain HYG84_19455 PF02810 SEC-C motif HYG84_19460 PF04539 Sigma-70 region 3 HYG84_19460 PF04545 Sigma-70, region 4 HYG84_19460 PF04542 Sigma-70 region 2 HYG84_19460 PF00140 Sigma-70 factor, region 1.2 HYG84_19460 PF03979 Sigma-70 factor, region 1.1 HYG84_19465 PF04546 Sigma-70, non-essential region HYG84_19465 PF03979 Sigma-70 factor, region 1.1 HYG84_19465 PF00140 Sigma-70 factor, region 1.2 HYG84_19465 PF04542 Sigma-70 region 2 HYG84_19465 PF04539 Sigma-70 region 3 HYG84_19465 PF04545 Sigma-70, region 4 HYG84_19500 PF13638 PIN domain HYG84_19500 PF02562 PhoH-like protein HYG84_19540 PF12169 DNA polymerase III subunits gamma and tau domain III HYG84_19590 PF00669 Bacterial flagellin N-terminal helical region HYG84_19590 PF00700 Bacterial flagellin C-terminal helical region HYG84_19590 PF00669 Bacterial flagellin N-terminal helical region HYG84_19590 PF00700 Bacterial flagellin C-terminal helical region HYG84_19625 PF17862 AAA+ lid domain HYG84_19625 PF00004 ATPase family associated with various cellular activities (AAA) HYG84_19625 PF01434 Peptidase family M41 HYG84_19650 PF07486 Cell Wall Hydrolase HYG84_19655 PF10502 Signal peptidase, peptidase S26 HYG84_19660 PF01471 Putative peptidoglycan binding domain HYG84_19660 PF07486 Cell Wall Hydrolase HYG84_19665 PF07963 Prokaryotic N-terminal methylation motif HYG84_19680 PF00437 Type II/IV secretion system protein HYG84_19685 PF00482 Type II secretion system (T2SS), protein F HYG84_19690 PF00437 Type II/IV secretion system protein HYG84_19690 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HYG84_19745 PF04025 Domain of unknown function (DUF370) HYG84_19770 PF07963 Prokaryotic N-terminal methylation motif HYG84_19770 PF08334 Type II secretion system (T2SS), protein G HYG84_19795 PF01145 SPFH domain / Band 7 family HYG84_19800 PF01145 SPFH domain / Band 7 family HYG84_19805 PF13286 Phosphohydrolase-associated domain HYG84_19805 PF01966 HD domain HYG84_19825 PF13361 UvrD-like helicase C-terminal domain HYG84_19825 PF00580 UvrD/REP helicase N-terminal domain HYG84_19830 PF02631 RecX family HYG84_19850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HYG84_19850 PF07730 Histidine kinase HYG84_19850 PF05384 Sensor protein DegS HYG84_19870 PF06908 YspA SLOG family HYG84_19930 PF17820 PDZ domain HYG84_19930 PF03572 Peptidase family S41 HYG84_19930 PF01471 Putative peptidoglycan binding domain HYG84_19945 PF00437 Type II/IV secretion system protein HYG84_19990 PF07724 AAA domain (Cdc48 subfamily) HYG84_19990 PF10431 C-terminal, D2-small domain, of ClpB protein HYG84_19990 PF06689 ClpX C4-type zinc finger HYG84_20010 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HYG84_20010 PF01367 5'-3' exonuclease, C-terminal SAM fold HYG84_20010 PF00476 DNA polymerase family A HYG84_20095 PF14480 DNA polymerase III polC-type N-terminus I HYG84_20095 PF11490 DNA polymerase III polC-type N-terminus II HYG84_20095 PF07733 Bacterial DNA polymerase III alpha NTPase domain HYG84_20095 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HYG84_20095 PF14579 Helix-hairpin-helix motif HYG84_20095 PF02811 PHP domain HYG84_20095 PF00929 Exonuclease HYG84_20100 PF06866 Protein of unknown function (DUF1256) HYG84_20135 PF06271 RDD family HYG84_20155 PF00149 Calcineurin-like phosphoesterase