CDL62_00005 SM00382 ATPases associated with a variety of cellular activities CDL62_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CDL62_00015 SM00646 CDL62_00015 CDL62_00080 SM00354 helix_turn _helix lactose operon repressor CDL62_00090 SM01217 CDL62_00090 CDL62_00100 SM00758 CDL62_00100 CDL62_00100 SM01217 CDL62_00100 CDL62_00105 SM00342 helix_turn_helix, arabinose operon control protein CDL62_00105 SM00387 Histidine kinase-like ATPases CDL62_00105 SM00388 His Kinase A (phosphoacceptor) domain CDL62_00105 SM00448 cheY-homologous receiver domain CDL62_00145 SM00878 Biotin carboxylase C-terminal domain CDL62_00250 SM00850 LytTr DNA-binding domain CDL62_00265 SM01004 Delta-aminolevulinic acid dehydratase CDL62_00285 SM01321 CDL62_00285 CDL62_00305 SM00387 Histidine kinase-like ATPases CDL62_00305 SM00388 His Kinase A (phosphoacceptor) domain CDL62_00310 SM00342 helix_turn_helix, arabinose operon control protein CDL62_00340 SM00729 Elongator protein 3, MiaB family, Radical SAM CDL62_00375 SM00382 ATPases associated with a variety of cellular activities CDL62_00380 SM00382 ATPases associated with a variety of cellular activities CDL62_00395 SM00813 Alpha-L-arabinofuranosidase C-terminus CDL62_00415 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDL62_00420 SM00487 DEAD-like helicases superfamily CDL62_00420 SM00490 helicase superfamily c-terminal domain CDL62_00465 SM00487 DEAD-like helicases superfamily CDL62_00465 SM00490 helicase superfamily c-terminal domain CDL62_00535 SM00028 Tetratricopeptide repeats CDL62_00540 SM00028 Tetratricopeptide repeats CDL62_00550 SM00072 Guanylate kinase homologues. CDL62_00570 SM00422 helix_turn_helix, mercury resistance CDL62_00585 SM00060 Fibronectin type 3 domain CDL62_00600 SM00481 DNA polymerase alpha chain like domain CDL62_00605 SM01126 CDL62_00605 CDL62_00615 SM00900 CDL62_00615 CDL62_00650 SM00060 Fibronectin type 3 domain CDL62_00650 SM00458 Ricin-type beta-trefoil CDL62_00655 SM00710 Parallel beta-helix repeats CDL62_00660 SM00421 helix_turn_helix, Lux Regulon CDL62_00675 SM00244 prohibitin homologues CDL62_00680 SM00244 prohibitin homologues CDL62_00700 SM01359 CDL62_00700 CDL62_00700 SM01360 CDL62_00700 CDL62_00750 SM00382 ATPases associated with a variety of cellular activities CDL62_00790 SM00905 Dihydroneopterin aldolase CDL62_00845 SM00387 Histidine kinase-like ATPases CDL62_00845 SM00388 His Kinase A (phosphoacceptor) domain CDL62_00850 SM00316 Ribosomal protein S1-like RNA-binding domain CDL62_00850 SM00732 Likely ribonuclease with RNase H fold. CDL62_00855 SM00530 Helix-turn-helix XRE-family like proteins CDL62_00865 SM00487 DEAD-like helicases superfamily CDL62_00865 SM00490 helicase superfamily c-terminal domain CDL62_00870 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CDL62_00875 SM00474 3'-5' exonuclease CDL62_00885 SM00487 DEAD-like helicases superfamily CDL62_00885 SM00490 helicase superfamily c-terminal domain CDL62_00905 SM00347 helix_turn_helix multiple antibiotic resistance protein CDL62_00915 SM00382 ATPases associated with a variety of cellular activities CDL62_00940 SM00363 S4 RNA-binding domain CDL62_00995 SM00342 helix_turn_helix, arabinose operon control protein CDL62_00995 SM00387 Histidine kinase-like ATPases CDL62_00995 SM00388 His Kinase A (phosphoacceptor) domain CDL62_00995 SM00448 cheY-homologous receiver domain CDL62_01010 SM00900 CDL62_01010 CDL62_01035 SM00487 DEAD-like helicases superfamily CDL62_01035 SM00490 helicase superfamily c-terminal domain CDL62_01045 SM00382 ATPases associated with a variety of cellular activities CDL62_01080 SM00116 Domain in cystathionine beta-synthase and other proteins. CDL62_01080 SM01240 CDL62_01080 CDL62_01125 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDL62_01125 SM00866 CDL62_01125 CDL62_01165 SM00360 RNA recognition motif CDL62_01205 SM00354 helix_turn _helix lactose operon repressor CDL62_01240 SM01350 CDL62_01240 CDL62_01260 SM00354 helix_turn _helix lactose operon repressor CDL62_01310 SM00729 Elongator protein 3, MiaB family, Radical SAM CDL62_01320 SM00387 Histidine kinase-like ATPases CDL62_01320 SM00388 His Kinase A (phosphoacceptor) domain CDL62_01320 SM00448 cheY-homologous receiver domain CDL62_01330 SM00382 ATPases associated with a variety of cellular activities CDL62_01355 SM00091 PAS domain CDL62_01355 SM00138 Methyltransferase, chemotaxis proteins CDL62_01375 SM00342 helix_turn_helix, arabinose operon control protein CDL62_01500 SM00881 CoA binding domain CDL62_01505 SM00729 Elongator protein 3, MiaB family, Radical SAM CDL62_01505 SM00876 Biotin and Thiamin Synthesis associated domain CDL62_01520 SM00729 Elongator protein 3, MiaB family, Radical SAM CDL62_01520 SM00876 Biotin and Thiamin Synthesis associated domain CDL62_01525 SM00091 PAS domain CDL62_01525 SM00387 Histidine kinase-like ATPases CDL62_01525 SM00388 His Kinase A (phosphoacceptor) domain CDL62_01530 SM00855 Phosphoglycerate mutase family CDL62_01550 SM00480 DNA polymerase III beta subunit CDL62_01575 SM00873 B3/4 domain CDL62_01575 SM00874 tRNA synthetase B5 domain CDL62_01575 SM00896 Ferredoxin-fold anticodon binding domain CDL62_01580 SM00342 helix_turn_helix, arabinose operon control protein CDL62_01860 SM00487 DEAD-like helicases superfamily CDL62_01860 SM00490 helicase superfamily c-terminal domain CDL62_01955 SM00342 helix_turn_helix, arabinose operon control protein CDL62_01955 SM00387 Histidine kinase-like ATPases CDL62_01955 SM00388 His Kinase A (phosphoacceptor) domain CDL62_01955 SM00448 cheY-homologous receiver domain CDL62_01970 SM00710 Parallel beta-helix repeats CDL62_01975 SM00344 helix_turn_helix ASNC type CDL62_02030 SM00977 TilS substrate C-terminal domain CDL62_02040 SM00342 helix_turn_helix, arabinose operon control protein CDL62_02045 SM00710 Parallel beta-helix repeats CDL62_02115 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CDL62_02130 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CDL62_02140 SM01007 Class II Aldolase and Adducin N-terminal domain CDL62_02165 SM01007 Class II Aldolase and Adducin N-terminal domain CDL62_02175 SM00861 Transketolase, pyrimidine binding domain CDL62_02240 SM00450 Rhodanese Homology Domain CDL62_02270 SM00342 helix_turn_helix, arabinose operon control protein CDL62_02270 SM00387 Histidine kinase-like ATPases CDL62_02270 SM00388 His Kinase A (phosphoacceptor) domain CDL62_02270 SM00448 cheY-homologous receiver domain CDL62_02290 SM00710 Parallel beta-helix repeats CDL62_02300 SM01387 CDL62_02300 CDL62_02305 SM00316 Ribosomal protein S1-like RNA-binding domain CDL62_02305 SM00322 K homology RNA-binding domain CDL62_02320 SM00028 Tetratricopeptide repeats CDL62_02325 SM00642 Alpha-amylase domain CDL62_02345 SM00518 AP endonuclease family 2 CDL62_02395 SM00937 CDL62_02395 CDL62_02400 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CDL62_02505 SM00100 Cyclic nucleotide-monophosphate binding domain CDL62_02505 SM00419 helix_turn_helix, cAMP Regulatory protein CDL62_02510 SM01005 Alanine racemase, C-terminal domain CDL62_02550 SM00387 Histidine kinase-like ATPases CDL62_02550 SM00388 His Kinase A (phosphoacceptor) domain CDL62_02620 SM00740 CDL62_02620 CDL62_02625 SM00363 S4 RNA-binding domain CDL62_02660 SM00830 Chorismate mutase type II CDL62_02680 SM00062 Bacterial periplasmic substrate-binding proteins CDL62_02680 SM00387 Histidine kinase-like ATPases CDL62_02680 SM00388 His Kinase A (phosphoacceptor) domain CDL62_02700 SM00382 ATPases associated with a variety of cellular activities CDL62_02705 SM00382 ATPases associated with a variety of cellular activities CDL62_02740 SM00946 Prolyl-tRNA synthetase, C-terminal CDL62_02765 SM00047 Lysozyme subfamily 2 CDL62_02765 SM00257 Lysin motif CDL62_02780 SM00387 Histidine kinase-like ATPases CDL62_02780 SM00388 His Kinase A (phosphoacceptor) domain CDL62_02895 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDL62_02895 SM00387 Histidine kinase-like ATPases CDL62_02895 SM00388 His Kinase A (phosphoacceptor) domain CDL62_02900 SM00448 cheY-homologous receiver domain CDL62_02915 SM00387 Histidine kinase-like ATPases CDL62_02915 SM00388 His Kinase A (phosphoacceptor) domain CDL62_02920 SM00448 cheY-homologous receiver domain CDL62_02920 SM00862 Transcriptional regulatory protein, C terminal CDL62_02960 SM00116 Domain in cystathionine beta-synthase and other proteins. CDL62_02960 SM00924 MgtE intracellular N domain CDL62_02980 SM00364 Leucine-rich repeats, bacterial type CDL62_02980 SM00369 Leucine-rich repeats, typical (most populated) subfamily CDL62_03035 SM00478 endonuclease III CDL62_03035 SM00525 CDL62_03035 CDL62_03045 SM00098 Alkaline phosphatase homologues CDL62_03175 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDL62_03195 SM00421 helix_turn_helix, Lux Regulon CDL62_03195 SM00448 cheY-homologous receiver domain CDL62_03215 SM00327 von Willebrand factor (vWF) type A domain CDL62_03225 SM00530 Helix-turn-helix XRE-family like proteins CDL62_03235 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDL62_03235 SM00382 ATPases associated with a variety of cellular activities CDL62_03295 SM00382 ATPases associated with a variety of cellular activities CDL62_03310 SM00938 Nitrogen regulatory protein P-II CDL62_03315 SM00938 Nitrogen regulatory protein P-II CDL62_03345 SM00729 Elongator protein 3, MiaB family, Radical SAM CDL62_03390 SM00382 ATPases associated with a variety of cellular activities CDL62_03395 SM00342 helix_turn_helix, arabinose operon control protein CDL62_03395 SM00871 Bacterial transcription activator, effector binding domain CDL62_03410 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDL62_03410 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_03410 SM00091 PAS domain CDL62_03410 SM00387 Histidine kinase-like ATPases CDL62_03410 SM00388 His Kinase A (phosphoacceptor) domain CDL62_03410 SM00448 cheY-homologous receiver domain CDL62_03420 SM00833 Cobalamin synthesis protein cobW C-terminal domain CDL62_03425 SM00833 Cobalamin synthesis protein cobW C-terminal domain CDL62_03430 SM00382 ATPases associated with a variety of cellular activities CDL62_03500 SM01130 CDL62_03500 CDL62_03520 SM00093 SERine Proteinase INhibitors CDL62_03525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDL62_03525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDL62_03545 SM00382 ATPases associated with a variety of cellular activities CDL62_03545 SM00448 cheY-homologous receiver domain CDL62_03550 SM00387 Histidine kinase-like ATPases CDL62_03550 SM00388 His Kinase A (phosphoacceptor) domain CDL62_03550 SM00448 cheY-homologous receiver domain CDL62_03680 SM00858 CDL62_03680 CDL62_03740 SM00382 ATPases associated with a variety of cellular activities CDL62_03785 SM00732 Likely ribonuclease with RNase H fold. CDL62_03800 SM00357 Cold shock protein domain CDL62_03800 SM00382 ATPases associated with a variety of cellular activities CDL62_03800 SM00959 Rho termination factor, N-terminal domain CDL62_03835 SM00387 Histidine kinase-like ATPases CDL62_03835 SM00388 His Kinase A (phosphoacceptor) domain CDL62_03840 SM00448 cheY-homologous receiver domain CDL62_03845 SM00138 Methyltransferase, chemotaxis proteins CDL62_03850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDL62_03850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDL62_03855 SM00260 Two component signalling adaptor domain CDL62_03860 SM00073 Histidine Phosphotransfer domain CDL62_03860 SM00260 Two component signalling adaptor domain CDL62_03860 SM00387 Histidine kinase-like ATPases CDL62_03860 SM01231 CDL62_03860 CDL62_03865 SM00448 cheY-homologous receiver domain CDL62_03870 SM00387 Histidine kinase-like ATPases CDL62_03870 SM00388 His Kinase A (phosphoacceptor) domain CDL62_03870 SM00448 cheY-homologous receiver domain CDL62_03875 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDL62_03875 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_03875 SM00091 PAS domain CDL62_03875 SM00387 Histidine kinase-like ATPases CDL62_03875 SM00388 His Kinase A (phosphoacceptor) domain CDL62_03875 SM00448 cheY-homologous receiver domain CDL62_03880 SM00100 Cyclic nucleotide-monophosphate binding domain CDL62_03880 SM00419 helix_turn_helix, cAMP Regulatory protein CDL62_03905 SM00850 LytTr DNA-binding domain CDL62_03915 SM00060 Fibronectin type 3 domain CDL62_03920 SM00463 Small MutS-related domain CDL62_03920 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CDL62_03920 SM00534 ATPase domain of DNA mismatch repair MUTS family CDL62_04025 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDL62_04030 SM00363 S4 RNA-binding domain CDL62_04050 SM00382 ATPases associated with a variety of cellular activities CDL62_04070 SM00534 ATPase domain of DNA mismatch repair MUTS family CDL62_04120 SM00487 DEAD-like helicases superfamily CDL62_04120 SM00490 helicase superfamily c-terminal domain CDL62_04120 SM00982 CDL62_04120 CDL62_04120 SM01058 CarD-like/TRCF domain CDL62_04125 SM00091 PAS domain CDL62_04125 SM00448 cheY-homologous receiver domain CDL62_04140 SM00028 Tetratricopeptide repeats CDL62_04150 SM01091 Transporter associated domain CDL62_04165 SM00864 Tubulin/FtsZ family, GTPase domain CDL62_04165 SM00865 Tubulin/FtsZ family, C-terminal domain CDL62_04170 SM00842 Cell division protein FtsA CDL62_04210 SM00740 CDL62_04210 CDL62_04230 SM00563 Phosphate acyltransferases CDL62_04345 SM00729 Elongator protein 3, MiaB family, Radical SAM CDL62_04370 SM00028 Tetratricopeptide repeats CDL62_04385 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CDL62_04425 SM00382 ATPases associated with a variety of cellular activities CDL62_04445 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain CDL62_04445 SM00448 cheY-homologous receiver domain CDL62_04455 SM00382 ATPases associated with a variety of cellular activities CDL62_04480 SM00388 His Kinase A (phosphoacceptor) domain CDL62_04480 SM00448 cheY-homologous receiver domain CDL62_04485 SM00331 Sigma factor PP2C-like phosphatases CDL62_04495 SM01192 CDL62_04495 CDL62_04495 SM01193 CDL62_04495 CDL62_04505 SM00662 RNA polymerases D CDL62_04510 SM00363 S4 RNA-binding domain CDL62_04510 SM01390 CDL62_04510 CDL62_04530 SM00316 Ribosomal protein S1-like RNA-binding domain CDL62_04585 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CDL62_04590 SM01374 CDL62_04590 CDL62_04610 SM00322 K homology RNA-binding domain CDL62_04625 SM01382 CDL62_04625 CDL62_04625 SM01383 CDL62_04625 CDL62_04645 SM01403 CDL62_04645 CDL62_04650 SM00838 Elongation factor G C-terminus CDL62_04650 SM00889 Elongation factor G, domain IV CDL62_04665 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CDL62_04785 SM01321 CDL62_04785 CDL62_04810 SM00028 Tetratricopeptide repeats CDL62_04810 SM00387 Histidine kinase-like ATPases CDL62_04810 SM00388 His Kinase A (phosphoacceptor) domain CDL62_04835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDL62_04835 SM00387 Histidine kinase-like ATPases CDL62_04835 SM00388 His Kinase A (phosphoacceptor) domain CDL62_04845 SM00421 helix_turn_helix, Lux Regulon CDL62_04895 SM00935 Outer membrane protein (OmpH-like) CDL62_04900 SM00935 Outer membrane protein (OmpH-like) CDL62_04905 SM00935 Outer membrane protein (OmpH-like) CDL62_04990 SM00062 Bacterial periplasmic substrate-binding proteins CDL62_05010 SM00838 Elongation factor G C-terminus CDL62_05010 SM00889 Elongation factor G, domain IV CDL62_05050 SM01217 CDL62_05050 CDL62_05055 SM00606 Cellulose Binding Domain Type IV CDL62_05080 SM00421 helix_turn_helix, Lux Regulon CDL62_05110 SM00245 tail specific protease CDL62_05180 SM00271 DnaJ molecular chaperone homology domain CDL62_05225 SM00886 Stress responsive A/B Barrel Domain CDL62_05250 SM01400 CDL62_05250 CDL62_05265 SM00363 S4 RNA-binding domain CDL62_05280 SM00450 Rhodanese Homology Domain CDL62_05325 SM00421 helix_turn_helix, Lux Regulon CDL62_05325 SM00448 cheY-homologous receiver domain CDL62_05330 SM00028 Tetratricopeptide repeats CDL62_05330 SM00387 Histidine kinase-like ATPases CDL62_05330 SM00388 His Kinase A (phosphoacceptor) domain CDL62_05365 SM00116 Domain in cystathionine beta-synthase and other proteins. CDL62_05365 SM01091 Transporter associated domain CDL62_05375 SM00478 endonuclease III CDL62_05375 SM00525 CDL62_05375 CDL62_05380 SM00411 bacterial (prokaryotic) histone like domain CDL62_05385 SM00316 Ribosomal protein S1-like RNA-binding domain CDL62_05395 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDL62_05410 SM00382 ATPases associated with a variety of cellular activities CDL62_05425 SM00382 ATPases associated with a variety of cellular activities CDL62_05425 SM00448 cheY-homologous receiver domain CDL62_05490 SM00458 Ricin-type beta-trefoil CDL62_05560 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CDL62_05595 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CDL62_05615 SM00859 Semialdehyde dehydrogenase, NAD binding domain CDL62_05635 SM00851 MGS-like domain CDL62_05635 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDL62_05650 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDL62_05650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDL62_05650 SM01049 CDL62_05650 CDL62_05695 SM00758 CDL62_05695 CDL62_05830 SM00382 ATPases associated with a variety of cellular activities CDL62_05870 SM00331 Sigma factor PP2C-like phosphatases CDL62_05895 SM00155 Phospholipase D. Active site motifs. CDL62_05925 SM01038 Beta galactosidase small chain CDL62_05950 SM00342 helix_turn_helix, arabinose operon control protein CDL62_05975 SM00858 CDL62_05975 CDL62_05995 SM01038 Beta galactosidase small chain CDL62_06045 SM00382 ATPases associated with a variety of cellular activities CDL62_06045 SM00994 ClpX C4-type zinc finger CDL62_06045 SM01086 C-terminal, D2-small domain, of ClpB protein CDL62_06065 SM00382 ATPases associated with a variety of cellular activities CDL62_06075 SM00341 Helicase and RNase D C-terminal CDL62_06075 SM00487 DEAD-like helicases superfamily CDL62_06075 SM00490 helicase superfamily c-terminal domain CDL62_06075 SM00956 CDL62_06075 CDL62_06105 SM00342 helix_turn_helix, arabinose operon control protein CDL62_06105 SM00387 Histidine kinase-like ATPases CDL62_06105 SM00388 His Kinase A (phosphoacceptor) domain CDL62_06105 SM00448 cheY-homologous receiver domain CDL62_06165 SM01038 Beta galactosidase small chain CDL62_06175 SM00606 Cellulose Binding Domain Type IV CDL62_06180 SM00606 Cellulose Binding Domain Type IV CDL62_06275 SM00813 Alpha-L-arabinofuranosidase C-terminus CDL62_06285 SM00606 Cellulose Binding Domain Type IV CDL62_06300 SM00633 Glycosyl hydrolase family 10 CDL62_06305 SM00758 CDL62_06305 CDL62_06305 SM01217 CDL62_06305 CDL62_06330 SM01038 Beta galactosidase small chain CDL62_06340 SM00606 Cellulose Binding Domain Type IV CDL62_06345 SM00829 Enoylreductase CDL62_06370 SM00354 helix_turn _helix lactose operon repressor CDL62_06395 SM00458 Ricin-type beta-trefoil CDL62_06400 SM00633 Glycosyl hydrolase family 10 CDL62_06430 SM00342 helix_turn_helix, arabinose operon control protein CDL62_06430 SM00387 Histidine kinase-like ATPases CDL62_06430 SM00388 His Kinase A (phosphoacceptor) domain CDL62_06430 SM00448 cheY-homologous receiver domain CDL62_06435 SM00387 Histidine kinase-like ATPases CDL62_06435 SM00433 TopoisomeraseII CDL62_06440 SM00434 DNA Topoisomerase IV CDL62_06470 SM01007 Class II Aldolase and Adducin N-terminal domain CDL62_06495 SM00382 ATPases associated with a variety of cellular activities CDL62_06495 SM00464 Found in ATP-dependent protease La (LON) CDL62_06520 SM00028 Tetratricopeptide repeats CDL62_06525 SM00937 CDL62_06525 CDL62_06535 SM00904 Riboflavin kinase CDL62_06540 SM00996 S-adenosyl-L-homocysteine hydrolase CDL62_06540 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CDL62_06690 SM00382 ATPases associated with a variety of cellular activities CDL62_06715 SM00798 AICARFT/IMPCHase bienzyme CDL62_06715 SM00851 MGS-like domain CDL62_06755 SM00382 ATPases associated with a variety of cellular activities CDL62_06770 SM00342 helix_turn_helix, arabinose operon control protein CDL62_06775 SM01018 B12 binding domain CDL62_06785 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain CDL62_06835 SM00382 ATPases associated with a variety of cellular activities CDL62_06870 SM00257 Lysin motif CDL62_06880 SM00470 ParB-like nuclease domain CDL62_06915 SM00382 ATPases associated with a variety of cellular activities CDL62_06940 SM00729 Elongator protein 3, MiaB family, Radical SAM CDL62_06945 SM00710 Parallel beta-helix repeats CDL62_06990 SM00853 MutL C terminal dimerisation domain CDL62_06990 SM01340 CDL62_06990 CDL62_07050 SM00100 Cyclic nucleotide-monophosphate binding domain CDL62_07050 SM00419 helix_turn_helix, cAMP Regulatory protein CDL62_07060 SM01001 AIR carboxylase CDL62_07100 SM00382 ATPases associated with a variety of cellular activities CDL62_07115 SM00387 Histidine kinase-like ATPases CDL62_07115 SM00388 His Kinase A (phosphoacceptor) domain CDL62_07120 SM00448 cheY-homologous receiver domain CDL62_07120 SM00862 Transcriptional regulatory protein, C terminal CDL62_07130 SM00382 ATPases associated with a variety of cellular activities CDL62_07215 SM00861 Transketolase, pyrimidine binding domain CDL62_07235 SM00487 DEAD-like helicases superfamily CDL62_07235 SM00490 helicase superfamily c-terminal domain CDL62_07250 SM00116 Domain in cystathionine beta-synthase and other proteins. CDL62_07250 SM00924 MgtE intracellular N domain CDL62_07255 SM00650 Ribosomal RNA adenine dimethylases CDL62_07285 SM00481 DNA polymerase alpha chain like domain CDL62_07355 SM01329 CDL62_07355 CDL62_07360 SM00917 LeuA allosteric (dimerisation) domain CDL62_07375 SM00917 LeuA allosteric (dimerisation) domain CDL62_07410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDL62_07425 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDL62_07435 SM00382 ATPases associated with a variety of cellular activities CDL62_07470 SM00342 helix_turn_helix, arabinose operon control protein CDL62_07500 SM00400 zinc finger CDL62_07500 SM00493 CDL62_07500 CDL62_07595 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain CDL62_07665 SM00382 ATPases associated with a variety of cellular activities CDL62_07690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDL62_07690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDL62_07700 SM00448 cheY-homologous receiver domain CDL62_07710 SM00073 Histidine Phosphotransfer domain CDL62_07710 SM00260 Two component signalling adaptor domain CDL62_07710 SM00387 Histidine kinase-like ATPases CDL62_07710 SM01231 CDL62_07710 CDL62_07715 SM00260 Two component signalling adaptor domain CDL62_07720 SM00260 Two component signalling adaptor domain CDL62_07725 SM00138 Methyltransferase, chemotaxis proteins CDL62_07730 SM00387 Histidine kinase-like ATPases CDL62_07740 SM00448 cheY-homologous receiver domain CDL62_07745 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDL62_07745 SM00091 PAS domain CDL62_07750 SM00138 Methyltransferase, chemotaxis proteins CDL62_07755 SM00138 Methyltransferase, chemotaxis proteins CDL62_07770 SM00091 PAS domain CDL62_07770 SM00331 Sigma factor PP2C-like phosphatases CDL62_07785 SM00382 ATPases associated with a variety of cellular activities CDL62_07805 SM00450 Rhodanese Homology Domain CDL62_07810 SM00729 Elongator protein 3, MiaB family, Radical SAM CDL62_07840 SM00448 cheY-homologous receiver domain CDL62_07845 SM00382 ATPases associated with a variety of cellular activities CDL62_07860 SM00028 Tetratricopeptide repeats CDL62_07885 SM01228 CDL62_07885 CDL62_07895 SM00465 GIY-YIG type nucleases (URI domain) CDL62_07915 SM01133 CDL62_07915 CDL62_07930 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CDL62_07960 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CDL62_07960 SM00474 3'-5' exonuclease CDL62_07960 SM00475 5'-3' exonuclease CDL62_07960 SM00482 DNA polymerase A domain CDL62_08015 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDL62_08015 SM00245 tail specific protease CDL62_08030 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDL62_08030 SM00245 tail specific protease CDL62_08105 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_08105 SM00091 PAS domain CDL62_08105 SM00387 Histidine kinase-like ATPases CDL62_08105 SM00388 His Kinase A (phosphoacceptor) domain CDL62_08150 SM01321 CDL62_08150 CDL62_08200 SM01234 CDL62_08200 CDL62_08215 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_08215 SM00091 PAS domain CDL62_08215 SM00387 Histidine kinase-like ATPases CDL62_08215 SM00388 His Kinase A (phosphoacceptor) domain CDL62_08230 SM00387 Histidine kinase-like ATPases CDL62_08230 SM00388 His Kinase A (phosphoacceptor) domain CDL62_08305 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDL62_08330 SM00450 Rhodanese Homology Domain CDL62_08385 SM00829 Enoylreductase CDL62_08390 SM00530 Helix-turn-helix XRE-family like proteins CDL62_08465 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDL62_08495 SM00387 Histidine kinase-like ATPases CDL62_08495 SM00388 His Kinase A (phosphoacceptor) domain CDL62_08495 SM00448 cheY-homologous receiver domain CDL62_08500 SM00331 Sigma factor PP2C-like phosphatases CDL62_08505 SM00841 Elongation factor P, C-terminal CDL62_08505 SM01185 CDL62_08505 CDL62_08575 SM00382 ATPases associated with a variety of cellular activities CDL62_08580 SM00656 CDL62_08580 CDL62_08635 SM00729 Elongator protein 3, MiaB family, Radical SAM CDL62_08655 SM00062 Bacterial periplasmic substrate-binding proteins CDL62_08655 SM00387 Histidine kinase-like ATPases CDL62_08655 SM00388 His Kinase A (phosphoacceptor) domain CDL62_08670 SM00382 ATPases associated with a variety of cellular activities CDL62_08740 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_08740 SM00091 PAS domain CDL62_08740 SM00387 Histidine kinase-like ATPases CDL62_08740 SM00388 His Kinase A (phosphoacceptor) domain CDL62_08740 SM00448 cheY-homologous receiver domain CDL62_08750 SM01209 CDL62_08750 CDL62_08750 SM01210 CDL62_08750 CDL62_08775 SM00487 DEAD-like helicases superfamily CDL62_08775 SM00490 helicase superfamily c-terminal domain CDL62_08795 SM01001 AIR carboxylase CDL62_08800 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CDL62_08805 SM00226 Low molecular weight phosphatase family CDL62_08850 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CDL62_08870 SM00100 Cyclic nucleotide-monophosphate binding domain CDL62_08870 SM00387 Histidine kinase-like ATPases CDL62_08875 SM00448 cheY-homologous receiver domain CDL62_08980 SM00984 UDP binding domain CDL62_09040 SM00091 PAS domain CDL62_09040 SM00387 Histidine kinase-like ATPases CDL62_09040 SM00388 His Kinase A (phosphoacceptor) domain CDL62_09110 SM00014 Acid phosphatase homologues CDL62_09115 SM00091 PAS domain CDL62_09115 SM00387 Histidine kinase-like ATPases CDL62_09115 SM00388 His Kinase A (phosphoacceptor) domain CDL62_09150 SM00448 cheY-homologous receiver domain CDL62_09150 SM00850 LytTr DNA-binding domain CDL62_09155 SM00028 Tetratricopeptide repeats CDL62_09210 SM00382 ATPases associated with a variety of cellular activities CDL62_09225 SM00382 ATPases associated with a variety of cellular activities CDL62_09285 SM00448 cheY-homologous receiver domain CDL62_09285 SM00862 Transcriptional regulatory protein, C terminal CDL62_09290 SM00387 Histidine kinase-like ATPases CDL62_09290 SM00388 His Kinase A (phosphoacceptor) domain CDL62_09300 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_09300 SM00091 PAS domain CDL62_09355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDL62_09365 SM00859 Semialdehyde dehydrogenase, NAD binding domain CDL62_09375 SM00606 Cellulose Binding Domain Type IV CDL62_09400 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CDL62_09405 SM00198 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. CDL62_09435 SM00861 Transketolase, pyrimidine binding domain CDL62_09440 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDL62_09440 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_09440 SM00091 PAS domain CDL62_09440 SM00387 Histidine kinase-like ATPases CDL62_09440 SM00388 His Kinase A (phosphoacceptor) domain CDL62_09450 SM00382 ATPases associated with a variety of cellular activities CDL62_09515 SM00028 Tetratricopeptide repeats CDL62_09535 SM00479 CDL62_09535 CDL62_09565 SM00587 ZnF_C4 abd HLH domain containing kinases domain CDL62_09600 SM00851 MGS-like domain CDL62_09600 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDL62_09670 SM00710 Parallel beta-helix repeats CDL62_09695 SM00387 Histidine kinase-like ATPases CDL62_09700 SM00091 PAS domain CDL62_09700 SM00387 Histidine kinase-like ATPases CDL62_09700 SM00388 His Kinase A (phosphoacceptor) domain CDL62_09700 SM00448 cheY-homologous receiver domain CDL62_09710 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CDL62_09710 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CDL62_09710 SM00493 CDL62_09710 CDL62_09755 SM00382 ATPases associated with a variety of cellular activities CDL62_09760 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDL62_09790 SM00758 CDL62_09790 CDL62_09835 SM00984 UDP binding domain CDL62_09950 SM00448 cheY-homologous receiver domain CDL62_09950 SM00850 LytTr DNA-binding domain CDL62_09995 SM00028 Tetratricopeptide repeats CDL62_10000 SM01217 CDL62_10000 CDL62_10005 SM01217 CDL62_10005 CDL62_10025 SM00448 cheY-homologous receiver domain CDL62_10025 SM00850 LytTr DNA-binding domain CDL62_10060 SM00840 CDL62_10060 CDL62_10075 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDL62_10075 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_10075 SM00091 PAS domain CDL62_10075 SM00387 Histidine kinase-like ATPases CDL62_10075 SM00388 His Kinase A (phosphoacceptor) domain CDL62_10075 SM00448 cheY-homologous receiver domain CDL62_10080 SM00387 Histidine kinase-like ATPases CDL62_10080 SM00388 His Kinase A (phosphoacceptor) domain CDL62_10080 SM00448 cheY-homologous receiver domain CDL62_10095 SM00316 Ribosomal protein S1-like RNA-binding domain CDL62_10095 SM00357 Cold shock protein domain CDL62_10095 SM00955 CDL62_10095 CDL62_10150 SM00905 Dihydroneopterin aldolase CDL62_10190 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CDL62_10190 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CDL62_10200 SM00448 cheY-homologous receiver domain CDL62_10215 SM00382 ATPases associated with a variety of cellular activities CDL62_10215 SM00448 cheY-homologous receiver domain CDL62_10230 SM00642 Alpha-amylase domain CDL62_10290 SM00382 ATPases associated with a variety of cellular activities CDL62_10310 SM00642 Alpha-amylase domain CDL62_10320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDL62_10360 SM00257 Lysin motif CDL62_10425 SM00487 DEAD-like helicases superfamily CDL62_10425 SM00490 helicase superfamily c-terminal domain CDL62_10430 SM01321 CDL62_10430 CDL62_10465 SM00316 Ribosomal protein S1-like RNA-binding domain CDL62_10490 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CDL62_10500 SM00382 ATPases associated with a variety of cellular activities CDL62_10520 SM00883 Chaperonin 10 Kd subunit CDL62_10600 SM00870 CDL62_10600 CDL62_10610 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDL62_10625 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CDL62_10640 SM00357 Cold shock protein domain CDL62_10655 SM00382 ATPases associated with a variety of cellular activities CDL62_10680 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CDL62_10705 SM00382 ATPases associated with a variety of cellular activities CDL62_10765 SM00855 Phosphoglycerate mutase family CDL62_10770 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDL62_10770 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_10770 SM00091 PAS domain CDL62_10770 SM00387 Histidine kinase-like ATPases CDL62_10770 SM00388 His Kinase A (phosphoacceptor) domain CDL62_10775 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CDL62_10775 SM00710 Parallel beta-helix repeats CDL62_10795 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_10795 SM00091 PAS domain CDL62_10795 SM00387 Histidine kinase-like ATPases CDL62_10795 SM00388 His Kinase A (phosphoacceptor) domain CDL62_10795 SM00448 cheY-homologous receiver domain CDL62_10795 SM01079 CDL62_10795 CDL62_10855 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDL62_10855 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_10855 SM00091 PAS domain CDL62_10870 SM00710 Parallel beta-helix repeats CDL62_10910 SM00530 Helix-turn-helix XRE-family like proteins CDL62_10965 SM00825 Beta-ketoacyl synthase CDL62_10970 SM00358 Double-stranded RNA binding motif CDL62_10970 SM00535 Ribonuclease III family CDL62_10975 SM00387 Histidine kinase-like ATPases CDL62_10975 SM00388 His Kinase A (phosphoacceptor) domain CDL62_10980 SM00448 cheY-homologous receiver domain CDL62_10980 SM00862 Transcriptional regulatory protein, C terminal CDL62_10990 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CDL62_11000 SM00935 Outer membrane protein (OmpH-like) CDL62_11040 SM00900 CDL62_11040 CDL62_11065 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CDL62_11080 SM00493 CDL62_11080 CDL62_11120 SM00422 helix_turn_helix, mercury resistance CDL62_11125 SM00854 Bacterial capsule synthesis protein PGA_cap CDL62_11155 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CDL62_11155 SM00534 ATPase domain of DNA mismatch repair MUTS family CDL62_11170 SM00382 ATPases associated with a variety of cellular activities CDL62_11195 SM00382 ATPases associated with a variety of cellular activities CDL62_11200 SM00382 ATPases associated with a variety of cellular activities CDL62_11200 SM00448 cheY-homologous receiver domain CDL62_11205 SM00387 Histidine kinase-like ATPases CDL62_11210 SM00881 CoA binding domain CDL62_11230 SM00670 Large family of predicted nucleotide-binding domains CDL62_11280 SM00357 Cold shock protein domain CDL62_11325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDL62_11360 SM01230 CDL62_11360 CDL62_11370 SM00710 Parallel beta-helix repeats CDL62_11375 SM00409 Immunoglobulin CDL62_11380 SM00710 Parallel beta-helix repeats CDL62_11390 SM00062 Bacterial periplasmic substrate-binding proteins CDL62_11390 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_11390 SM00091 PAS domain CDL62_11390 SM00387 Histidine kinase-like ATPases CDL62_11390 SM00388 His Kinase A (phosphoacceptor) domain CDL62_11395 SM00642 Alpha-amylase domain CDL62_11405 SM00642 Alpha-amylase domain CDL62_11425 SM00354 helix_turn _helix lactose operon repressor CDL62_11445 SM00642 Alpha-amylase domain CDL62_11460 SM00849 Metallo-beta-lactamase superfamily CDL62_11480 SM00342 helix_turn_helix, arabinose operon control protein CDL62_11480 SM00387 Histidine kinase-like ATPases CDL62_11480 SM00388 His Kinase A (phosphoacceptor) domain CDL62_11480 SM00448 cheY-homologous receiver domain CDL62_11490 SM00448 cheY-homologous receiver domain CDL62_11490 SM00850 LytTr DNA-binding domain CDL62_11525 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDL62_11530 SM00902 Iron hydrogenase small subunit CDL62_11530 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDL62_11575 SM00481 DNA polymerase alpha chain like domain CDL62_11580 SM00387 Histidine kinase-like ATPases CDL62_11590 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDL62_11595 SM00902 Iron hydrogenase small subunit CDL62_11595 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDL62_11675 SM00714 Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins. CDL62_11710 SM00342 helix_turn_helix, arabinose operon control protein CDL62_11720 SM00387 Histidine kinase-like ATPases CDL62_11745 SM00342 helix_turn_helix, arabinose operon control protein CDL62_11755 SM01126 CDL62_11755 CDL62_11765 SM00028 Tetratricopeptide repeats CDL62_11795 SM00060 Fibronectin type 3 domain CDL62_11795 SM00560 LamG-like jellyroll fold domain CDL62_11795 SM00710 Parallel beta-helix repeats CDL62_11810 SM00861 Transketolase, pyrimidine binding domain CDL62_11815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDL62_11815 SM00387 Histidine kinase-like ATPases CDL62_11815 SM00388 His Kinase A (phosphoacceptor) domain CDL62_11820 SM00448 cheY-homologous receiver domain CDL62_11820 SM00862 Transcriptional regulatory protein, C terminal CDL62_11920 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CDL62_11920 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CDL62_11925 SM00649 Ribosomal protein L11/L12 CDL62_11950 SM00663 RNA polymerase I subunit A N-terminus CDL62_11965 SM00656 CDL62_11965 CDL62_11965 SM00710 Parallel beta-helix repeats CDL62_11975 SM00487 DEAD-like helicases superfamily CDL62_11975 SM00490 helicase superfamily c-terminal domain CDL62_11975 SM00847 Helicase associated domain (HA2) Add an annotation CDL62_11980 SM00448 cheY-homologous receiver domain CDL62_11980 SM00850 LytTr DNA-binding domain CDL62_12025 SM00448 cheY-homologous receiver domain CDL62_12025 SM00850 LytTr DNA-binding domain CDL62_12030 SM00448 cheY-homologous receiver domain CDL62_12030 SM00850 LytTr DNA-binding domain CDL62_12050 SM00642 Alpha-amylase domain CDL62_12145 SM00382 ATPases associated with a variety of cellular activities CDL62_12160 SM00448 cheY-homologous receiver domain CDL62_12160 SM00850 LytTr DNA-binding domain CDL62_12225 SM00563 Phosphate acyltransferases CDL62_12260 SM00382 ATPases associated with a variety of cellular activities CDL62_12275 SM00060 Fibronectin type 3 domain CDL62_12300 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CDL62_12370 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_12370 SM00091 PAS domain CDL62_12370 SM00387 Histidine kinase-like ATPases CDL62_12370 SM00388 His Kinase A (phosphoacceptor) domain CDL62_12370 SM00448 cheY-homologous receiver domain CDL62_12405 SM00046 Diacylglycerol kinase catalytic domain (presumed) CDL62_12525 SM00382 ATPases associated with a variety of cellular activities CDL62_12540 SM00530 Helix-turn-helix XRE-family like proteins CDL62_12555 SM00382 ATPases associated with a variety of cellular activities CDL62_12635 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain CDL62_12650 SM00220 Serine/Threonine protein kinases, catalytic domain CDL62_12660 SM00560 LamG-like jellyroll fold domain CDL62_12665 SM00116 Domain in cystathionine beta-synthase and other proteins. CDL62_12670 SM00883 Chaperonin 10 Kd subunit CDL62_12700 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDL62_12700 SM00954 Region found in RelA / SpoT proteins CDL62_12710 SM00788 Adenylosuccinate synthetase CDL62_12930 SM00656 CDL62_12930 CDL62_12935 SM00710 Parallel beta-helix repeats CDL62_13035 SM00876 Biotin and Thiamin Synthesis associated domain CDL62_13065 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CDL62_13080 SM00530 Helix-turn-helix XRE-family like proteins CDL62_13130 SM00382 ATPases associated with a variety of cellular activities CDL62_13215 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDL62_13215 SM00245 tail specific protease CDL62_13255 SM00530 Helix-turn-helix XRE-family like proteins CDL62_13320 SM01321 CDL62_13320 CDL62_13420 SM00861 Transketolase, pyrimidine binding domain CDL62_13450 SM00028 Tetratricopeptide repeats CDL62_13465 SM00448 cheY-homologous receiver domain CDL62_13470 SM00387 Histidine kinase-like ATPases CDL62_13470 SM00388 His Kinase A (phosphoacceptor) domain CDL62_13470 SM00448 cheY-homologous receiver domain CDL62_13495 SM01409 CDL62_13495 CDL62_13530 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDL62_13530 SM00387 Histidine kinase-like ATPases CDL62_13540 SM00890 Domain of unknown function CDL62_13610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDL62_13610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDL62_13625 SM00226 Low molecular weight phosphatase family CDL62_13640 SM01068 Putative carbohydrate binding domain CDL62_13655 SM00387 Histidine kinase-like ATPases CDL62_13655 SM00388 His Kinase A (phosphoacceptor) domain CDL62_13670 SM00342 helix_turn_helix, arabinose operon control protein CDL62_13670 SM00387 Histidine kinase-like ATPases CDL62_13670 SM00388 His Kinase A (phosphoacceptor) domain CDL62_13670 SM00448 cheY-homologous receiver domain CDL62_13685 SM01038 Beta galactosidase small chain CDL62_13690 SM00342 helix_turn_helix, arabinose operon control protein CDL62_13690 SM00387 Histidine kinase-like ATPases CDL62_13690 SM00388 His Kinase A (phosphoacceptor) domain CDL62_13690 SM00448 cheY-homologous receiver domain CDL62_13730 SM01359 CDL62_13730 CDL62_13730 SM01360 CDL62_13730 CDL62_13745 SM00642 Alpha-amylase domain CDL62_13750 SM00642 Alpha-amylase domain CDL62_13755 SM00642 Alpha-amylase domain CDL62_13770 SM00448 cheY-homologous receiver domain CDL62_13775 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_13775 SM00091 PAS domain CDL62_13775 SM00387 Histidine kinase-like ATPases CDL62_13775 SM00388 His Kinase A (phosphoacceptor) domain CDL62_13780 SM00091 PAS domain CDL62_13780 SM00387 Histidine kinase-like ATPases CDL62_13780 SM00388 His Kinase A (phosphoacceptor) domain CDL62_13780 SM00448 cheY-homologous receiver domain CDL62_13785 SM00382 ATPases associated with a variety of cellular activities CDL62_13790 SM00062 Bacterial periplasmic substrate-binding proteins CDL62_13790 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDL62_13790 SM00091 PAS domain CDL62_13790 SM00387 Histidine kinase-like ATPases CDL62_13790 SM00388 His Kinase A (phosphoacceptor) domain CDL62_13790 SM00448 cheY-homologous receiver domain CDL62_13805 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CDL62_13840 SM00448 cheY-homologous receiver domain CDL62_13840 SM00850 LytTr DNA-binding domain CDL62_13850 SM00850 LytTr DNA-binding domain CDL62_13855 SM00420 helix_turn_helix, Deoxyribose operon repressor CDL62_13855 SM01134 CDL62_13855 CDL62_13880 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDL62_13935 SM00873 B3/4 domain CDL62_13940 SM00849 Metallo-beta-lactamase superfamily CDL62_13945 SM00347 helix_turn_helix multiple antibiotic resistance protein CDL62_14060 SM00382 ATPases associated with a variety of cellular activities CDL62_14080 SM00986 Uracil DNA glycosylase superfamily CDL62_14080 SM00987 UreE urease accessory protein, C-terminal domain CDL62_14085 SM00342 helix_turn_helix, arabinose operon control protein CDL62_14085 SM00387 Histidine kinase-like ATPases CDL62_14085 SM00388 His Kinase A (phosphoacceptor) domain CDL62_14085 SM00448 cheY-homologous receiver domain CDL62_14145 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDL62_14155 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CDL62_14160 SM00387 Histidine kinase-like ATPases CDL62_14160 SM00433 TopoisomeraseII CDL62_14175 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDL62_14190 SM00487 DEAD-like helicases superfamily CDL62_14190 SM00490 helicase superfamily c-terminal domain CDL62_14205 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDL62_14215 SM01211 CDL62_14215 CDL62_14270 SM00014 Acid phosphatase homologues CDL62_14275 SM00479 CDL62_14275 CDL62_14305 SM00563 Phosphate acyltransferases CDL62_14375 SM00530 Helix-turn-helix XRE-family like proteins CDL62_14385 SM00893 Electron transfer flavoprotein domain CDL62_14390 SM00893 Electron transfer flavoprotein domain CDL62_14415 SM00382 ATPases associated with a variety of cellular activities CDL62_14500 SM00487 DEAD-like helicases superfamily CDL62_14500 SM00490 helicase superfamily c-terminal domain CDL62_14555 SM00382 ATPases associated with a variety of cellular activities CDL62_14590 SM00382 ATPases associated with a variety of cellular activities CDL62_14625 SM00530 Helix-turn-helix XRE-family like proteins CDL62_14690 SM00382 ATPases associated with a variety of cellular activities CDL62_14715 SM00387 Histidine kinase-like ATPases CDL62_14805 SM00382 ATPases associated with a variety of cellular activities CDL62_14820 SM00966 SpoVT / AbrB like domain CDL62_14880 SM00382 ATPases associated with a variety of cellular activities CDL62_14935 SM00220 Serine/Threonine protein kinases, catalytic domain CDL62_14970 SM00530 Helix-turn-helix XRE-family like proteins CDL62_15070 SM00382 ATPases associated with a variety of cellular activities CDL62_15145 SM00487 DEAD-like helicases superfamily CDL62_15170 SM00530 Helix-turn-helix XRE-family like proteins CDL62_15180 SM00530 Helix-turn-helix XRE-family like proteins CDL62_15190 SM01252 CDL62_15190 CDL62_15310 SM00487 DEAD-like helicases superfamily CDL62_15335 SM00670 Large family of predicted nucleotide-binding domains CDL62_15370 SM00382 ATPases associated with a variety of cellular activities CDL62_15440 SM00530 Helix-turn-helix XRE-family like proteins CDL62_15485 SM01252 CDL62_15485 CDL62_15500 SM00530 Helix-turn-helix XRE-family like proteins CDL62_15520 SM00220 Serine/Threonine protein kinases, catalytic domain CDL62_15585 SM00382 ATPases associated with a variety of cellular activities CDL62_15670 SM00490 helicase superfamily c-terminal domain CDL62_15790 SM00670 Large family of predicted nucleotide-binding domains CDL62_15870 SM00710 Parallel beta-helix repeats CDL62_15895 SM00382 ATPases associated with a variety of cellular activities CDL62_15915 SM00382 ATPases associated with a variety of cellular activities CDL62_15915 SM00448 cheY-homologous receiver domain CDL62_15920 SM00387 Histidine kinase-like ATPases CDL62_15925 SM00028 Tetratricopeptide repeats CDL62_15925 SM00287 Bacterial SH3 domain homologues CDL62_15935 SM00028 Tetratricopeptide repeats CDL62_15940 SM00327 von Willebrand factor (vWF) type A domain CDL62_15945 SM00327 von Willebrand factor (vWF) type A domain CDL62_16045 SM00408 Immunoglobulin C-2 Type CDL62_16045 SM00409 Immunoglobulin CDL62_16100 SM00878 Biotin carboxylase C-terminal domain CDL62_16110 SM00981 CDL62_16110 CDL62_16120 SM00710 Parallel beta-helix repeats CDL62_16165 SM01329 CDL62_16165 CDL62_16175 SM00387 Histidine kinase-like ATPases CDL62_16175 SM00388 His Kinase A (phosphoacceptor) domain CDL62_16190 SM00060 Fibronectin type 3 domain CDL62_16205 SM00421 helix_turn_helix, Lux Regulon CDL62_16205 SM00448 cheY-homologous receiver domain CDL62_16210 SM00028 Tetratricopeptide repeats CDL62_16210 SM00387 Histidine kinase-like ATPases CDL62_16225 SM00530 Helix-turn-helix XRE-family like proteins CDL62_16230 SM01321 CDL62_16230 CDL62_16250 SM00881 CoA binding domain CDL62_16285 SM00331 Sigma factor PP2C-like phosphatases CDL62_16285 SM00448 cheY-homologous receiver domain CDL62_16290 SM00357 Cold shock protein domain CDL62_16365 SM00822 CDL62_16365 CDL62_16380 SM00028 Tetratricopeptide repeats CDL62_16395 SM00562 CDL62_16395 CDL62_16425 SM00938 Nitrogen regulatory protein P-II CDL62_16445 SM00563 Phosphate acyltransferases CDL62_16450 SM00028 Tetratricopeptide repeats CDL62_16455 SM00421 helix_turn_helix, Lux Regulon CDL62_16480 SM00448 cheY-homologous receiver domain CDL62_16510 SM01321 CDL62_16510 CDL62_16520 SM00903 Flavin reductase like domain CDL62_16540 SM00028 Tetratricopeptide repeats CDL62_16545 SM00382 ATPases associated with a variety of cellular activities CDL62_16545 SM01086 C-terminal, D2-small domain, of ClpB protein CDL62_16550 SM00434 DNA Topoisomerase IV CDL62_16555 SM00028 Tetratricopeptide repeats CDL62_16595 SM00530 Helix-turn-helix XRE-family like proteins CDL62_16610 SM00861 Transketolase, pyrimidine binding domain CDL62_16625 SM00563 Phosphate acyltransferases CDL62_16630 SM01329 CDL62_16630 CDL62_16640 SM00382 ATPases associated with a variety of cellular activities CDL62_16660 SM00729 Elongator protein 3, MiaB family, Radical SAM CDL62_16665 SM00382 ATPases associated with a variety of cellular activities CDL62_16665 SM00962 SRP54-type protein, GTPase domain CDL62_16665 SM00963 SRP54-type protein, helical bundle domain CDL62_16685 SM00852 Probable molybdopterin binding domain CDL62_16700 SM00490 helicase superfamily c-terminal domain CDL62_16700 SM00957 SecA DEAD-like domain CDL62_16700 SM00958 SecA preprotein cross-linking domain CDL62_16715 SM00450 Rhodanese Homology Domain CDL62_16745 SM00954 Region found in RelA / SpoT proteins CDL62_16765 SM00292 breast cancer carboxy-terminal domain CDL62_16765 SM00532 Ligase N family CDL62_16780 SM00028 Tetratricopeptide repeats CDL62_16805 SM00458 Ricin-type beta-trefoil CDL62_16805 SM00710 Parallel beta-helix repeats CDL62_16810 SM00487 DEAD-like helicases superfamily CDL62_16810 SM00490 helicase superfamily c-terminal domain CDL62_16845 SM00633 Glycosyl hydrolase family 10 CDL62_16855 SM00382 ATPases associated with a variety of cellular activities CDL62_16855 SM00962 SRP54-type protein, GTPase domain CDL62_16855 SM00963 SRP54-type protein, helical bundle domain CDL62_16890 SM00854 Bacterial capsule synthesis protein PGA_cap CDL62_16895 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CDL62_16895 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CDL62_16895 SM00493 CDL62_16895 CDL62_16905 SM00729 Elongator protein 3, MiaB family, Radical SAM CDL62_16910 SM00729 Elongator protein 3, MiaB family, Radical SAM CDL62_16965 SM00245 tail specific protease CDL62_17120 SM00028 Tetratricopeptide repeats CDL62_17190 SM01321 CDL62_17190 CDL62_17200 SM00382 ATPases associated with a variety of cellular activities CDL62_17210 SM00387 Histidine kinase-like ATPases CDL62_17210 SM00388 His Kinase A (phosphoacceptor) domain CDL62_17255 SM00322 K homology RNA-binding domain CDL62_17255 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDL62_17270 SM00729 Elongator protein 3, MiaB family, Radical SAM CDL62_17280 SM00729 Elongator protein 3, MiaB family, Radical SAM CDL62_17390 SM00382 ATPases associated with a variety of cellular activities CDL62_17390 SM01086 C-terminal, D2-small domain, of ClpB protein CDL62_17410 SM00382 ATPases associated with a variety of cellular activities CDL62_17440 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDL62_17440 SM00245 tail specific protease CDL62_17460 SM00316 Ribosomal protein S1-like RNA-binding domain CDL62_17465 SM00984 UDP binding domain CDL62_17615 SM00822 CDL62_17615 CDL62_17620 SM00419 helix_turn_helix, cAMP Regulatory protein CDL62_17655 SM00836 DALR anticodon binding domain CDL62_17655 SM01016 Arginyl tRNA synthetase N terminal dom CDL62_17660 SM00091 PAS domain CDL62_17660 SM00387 Histidine kinase-like ATPases CDL62_17660 SM00388 His Kinase A (phosphoacceptor) domain CDL62_17705 SM00633 Glycosyl hydrolase family 10 CDL62_17715 SM00530 Helix-turn-helix XRE-family like proteins CDL62_17785 SM00899 CDL62_17785 CDL62_17795 SM00712 DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria. CDL62_17810 SM01323 CDL62_17810 CDL62_17835 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CDL62_17920 SM00028 Tetratricopeptide repeats CDL62_17920 SM00387 Histidine kinase-like ATPases CDL62_17960 SM00859 Semialdehyde dehydrogenase, NAD binding domain CDL62_18025 SM00387 Histidine kinase-like ATPases CDL62_18025 SM00388 His Kinase A (phosphoacceptor) domain CDL62_18045 SM00822 CDL62_18045 CDL62_18060 SM00448 cheY-homologous receiver domain CDL62_18060 SM00850 LytTr DNA-binding domain CDL62_18070 SM00411 bacterial (prokaryotic) histone like domain CDL62_18090 SM00843 CDL62_18090 CDL62_18145 SM00382 ATPases associated with a variety of cellular activities CDL62_18165 SM00849 Metallo-beta-lactamase superfamily CDL62_18185 SM00028 Tetratricopeptide repeats CDL62_18185 SM00671 Sel1-like repeats. CDL62_18225 SM00530 Helix-turn-helix XRE-family like proteins CDL62_18250 SM00420 helix_turn_helix, Deoxyribose operon repressor CDL62_18255 SM00382 ATPases associated with a variety of cellular activities CDL62_18375 SM00382 ATPases associated with a variety of cellular activities CDL62_18435 SM00967 RNA 2'-O ribose methyltransferase substrate binding CDL62_18440 SM00382 ATPases associated with a variety of cellular activities CDL62_18445 SM00257 Lysin motif