locus-tag class description Alvin_0001 PF08299 Bacterial dnaA protein helix-turn-helix Alvin_0001 PF00308 Bacterial dnaA protein Alvin_0001 PF11638 DnaA N-terminal domain Alvin_0002 PF02767 DNA polymerase III beta subunit, central domain Alvin_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Alvin_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Alvin_0003 PF02463 RecF/RecN/SMC N terminal domain Alvin_0007 PF02687 FtsX-like permease family Alvin_0007 PF00005 ABC transporter Alvin_0007 PF12704 MacB-like periplasmic core domain Alvin_0008 PF00005 ABC transporter Alvin_0009 PF00011 Hsp20/alpha crystallin family Alvin_0011 PF00072 Response regulator receiver domain Alvin_0011 PF00486 Transcriptional regulatory protein, C terminal Alvin_0012 PF08918 PhoQ Sensor Alvin_0012 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0015 PF00873 AcrB/AcrD/AcrF family Alvin_0019 PF01545 Cation efflux family Alvin_0019 PF16916 Dimerisation domain of Zinc Transporter Alvin_0025 PF00072 Response regulator receiver domain Alvin_0025 PF00486 Transcriptional regulatory protein, C terminal Alvin_0026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0026 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0027 PF02386 Cation transport protein Alvin_0028 PF04358 DsrC like protein Alvin_0030 PF03458 UPF0126 domain Alvin_0031 PF18053 DNA gyrase B subunit insert domain Alvin_0031 PF01751 Toprim domain Alvin_0031 PF00204 DNA gyrase B Alvin_0031 PF00986 DNA gyrase B subunit, carboxyl terminus Alvin_0031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0032 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Alvin_0032 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alvin_0033 PF04898 Glutamate synthase central domain Alvin_0033 PF01493 GXGXG motif Alvin_0033 PF01645 Conserved region in glutamate synthase Alvin_0033 PF00310 Glutamine amidotransferases class-II Alvin_0036 PF02527 rRNA small subunit methyltransferase G Alvin_0037 PF13614 AAA domain Alvin_0038 PF17762 HTH domain found in ParB protein Alvin_0038 PF02195 ParB-like nuclease domain Alvin_0039 PF03899 ATP synthase I chain Alvin_0040 PF00119 ATP synthase A chain Alvin_0041 PF00137 ATP synthase subunit C Alvin_0042 PF00430 ATP synthase B/B' CF(0) Alvin_0043 PF00213 ATP synthase delta (OSCP) subunit Alvin_0044 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alvin_0044 PF00306 ATP synthase alpha/beta chain, C terminal domain Alvin_0044 PF02874 ATP synthase alpha/beta family, beta-barrel domain Alvin_0045 PF00231 ATP synthase Alvin_0046 PF02874 ATP synthase alpha/beta family, beta-barrel domain Alvin_0046 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alvin_0047 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Alvin_0047 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Alvin_0048 PF12804 MobA-like NTP transferase domain Alvin_0048 PF00132 Bacterial transferase hexapeptide (six repeats) Alvin_0049 PF01380 SIS domain Alvin_0054 PF02492 CobW/HypB/UreG, nucleotide-binding domain Alvin_0056 PF02580 D-Tyr-tRNA(Tyr) deacylase Alvin_0057 PF00561 alpha/beta hydrolase fold Alvin_0058 PF01964 Radical SAM ThiC family Alvin_0058 PF13667 ThiC-associated domain Alvin_0059 PF00563 EAL domain Alvin_0059 PF00072 Response regulator receiver domain Alvin_0059 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0061 PF00561 alpha/beta hydrolase fold Alvin_0062 PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Alvin_0063 PF02803 Thiolase, C-terminal domain Alvin_0063 PF00108 Thiolase, N-terminal domain Alvin_0064 PF05233 PHB accumulation regulatory domain Alvin_0064 PF07879 PHB/PHA accumulation regulator DNA-binding domain Alvin_0065 PF09361 Phasin protein Alvin_0066 PF00106 short chain dehydrogenase Alvin_0067 PF01784 NIF3 (NGG1p interacting factor 3) Alvin_0068 PF00355 Rieske [2Fe-2S] domain Alvin_0068 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Alvin_0069 PF00032 Cytochrome b(C-terminal)/b6/petD Alvin_0069 PF00033 Cytochrome b/b6/petB Alvin_0070 PF02167 Cytochrome C1 family Alvin_0071 PF02798 Glutathione S-transferase, N-terminal domain Alvin_0071 PF00043 Glutathione S-transferase, C-terminal domain Alvin_0072 PF04386 Stringent starvation protein B Alvin_0079 PF00330 Aconitase family (aconitate hydratase) Alvin_0079 PF00694 Aconitase C-terminal domain Alvin_0080 PF04303 PrpF protein Alvin_0081 PF09335 SNARE associated Golgi protein Alvin_0082 PF01625 Peptide methionine sulfoxide reductase Alvin_0085 PF16193 AAA C-terminal domain Alvin_0085 PF12002 MgsA AAA+ ATPase C terminal Alvin_0085 PF00004 ATPase family associated with various cellular activities (AAA) Alvin_0091 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alvin_0096 PF00285 Citrate synthase, C-terminal domain Alvin_0098 PF07729 FCD domain Alvin_0098 PF00392 Bacterial regulatory proteins, gntR family Alvin_0103 PF00202 Aminotransferase class-III Alvin_0104 PF02581 Thiamine monophosphate synthase Alvin_0105 PF08543 Phosphomethylpyrimidine kinase Alvin_0106 PF00301 Rubredoxin Alvin_0108 PF01521 Iron-sulphur cluster biosynthesis Alvin_0109 PF01118 Semialdehyde dehydrogenase, NAD binding domain Alvin_0109 PF02774 Semialdehyde dehydrogenase, dimerisation domain Alvin_0110 PF01521 Iron-sulphur cluster biosynthesis Alvin_0112 PF01479 S4 domain Alvin_0112 PF00579 tRNA synthetases class I (W and Y) Alvin_0113 PF01569 PAP2 superfamily Alvin_0114 PF00534 Glycosyl transferases group 1 Alvin_0114 PF13439 Glycosyltransferase Family 4 Alvin_0115 PF01553 Acyltransferase Alvin_0118 PF00293 NUDIX domain Alvin_0119 PF00391 PEP-utilising enzyme, mobile domain Alvin_0119 PF02896 PEP-utilising enzyme, TIM barrel domain Alvin_0119 PF05524 PEP-utilising enzyme, N-terminal Alvin_0119 PF01590 GAF domain Alvin_0120 PF02913 FAD linked oxidases, C-terminal domain Alvin_0120 PF01565 FAD binding domain Alvin_0121 PF04972 BON domain Alvin_0122 PF02021 Uncharacterised protein family UPF0102 Alvin_0123 PF04348 LppC putative lipoprotein Alvin_0124 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alvin_0125 PF02381 MraZ protein, putative antitoxin-like Alvin_0126 PF01795 MraW methylase family Alvin_0127 PF04999 Cell division protein FtsL Alvin_0128 PF03717 Penicillin-binding Protein dimerisation domain Alvin_0128 PF00905 Penicillin binding protein transpeptidase domain Alvin_0129 PF02875 Mur ligase family, glutamate ligase domain Alvin_0129 PF08245 Mur ligase middle domain Alvin_0129 PF01225 Mur ligase family, catalytic domain Alvin_0130 PF00953 Glycosyl transferase family 4 Alvin_0130 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Alvin_0131 PF02875 Mur ligase family, glutamate ligase domain Alvin_0131 PF08245 Mur ligase middle domain Alvin_0132 PF01098 Cell cycle protein Alvin_0133 PF04101 Glycosyltransferase family 28 C-terminal domain Alvin_0133 PF03033 Glycosyltransferase family 28 N-terminal domain Alvin_0134 PF01225 Mur ligase family, catalytic domain Alvin_0134 PF08245 Mur ligase middle domain Alvin_0134 PF02875 Mur ligase family, glutamate ligase domain Alvin_0135 PF01565 FAD binding domain Alvin_0135 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Alvin_0136 PF01820 D-ala D-ala ligase N-terminus Alvin_0136 PF07478 D-ala D-ala ligase C-terminus Alvin_0137 PF08478 POTRA domain, FtsQ-type Alvin_0137 PF03799 Cell division protein FtsQ Alvin_0138 PF02491 SHS2 domain inserted in FTSA Alvin_0139 PF12327 FtsZ family, C-terminal domain Alvin_0139 PF00091 Tubulin/FtsZ family, GTPase domain Alvin_0140 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Alvin_0142 PF01476 LysM domain Alvin_0142 PF01551 Peptidase family M23 Alvin_0143 PF07516 SecA Wing and Scaffold domain Alvin_0143 PF01043 SecA preprotein cross-linking domain Alvin_0143 PF02810 SEC-C motif Alvin_0143 PF07517 SecA DEAD-like domain Alvin_0144 PF01960 ArgJ family Alvin_0145 PF00293 NUDIX domain Alvin_0146 PF00578 AhpC/TSA family Alvin_0149 PF02424 ApbE family Alvin_0150 PF03884 DNA gyrase inhibitor YacG Alvin_0151 PF07072 Cell division protein Alvin_0153 PF01709 Transcriptional regulator Alvin_0154 PF02075 Crossover junction endodeoxyribonuclease RuvC Alvin_0155 PF01330 RuvA N terminal domain Alvin_0155 PF07499 RuvA, C-terminal domain Alvin_0156 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0156 PF08448 PAS fold Alvin_0157 PF01565 FAD binding domain Alvin_0158 PF02754 Cysteine-rich domain Alvin_0158 PF13183 4Fe-4S dicluster domain Alvin_0160 PF01121 Dephospho-CoA kinase Alvin_0161 PF01478 Type IV leader peptidase family Alvin_0161 PF06750 Bacterial Peptidase A24 N-terminal domain Alvin_0162 PF00482 Type II secretion system (T2SS), protein F Alvin_0163 PF00437 Type II/IV secretion system protein Alvin_0163 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Alvin_0165 PF16177 Acetyl-coenzyme A synthetase N-terminus Alvin_0165 PF13193 AMP-binding enzyme C-terminal domain Alvin_0165 PF00501 AMP-binding enzyme Alvin_0167 PF00571 CBS domain Alvin_0168 PF00117 Glutamine amidotransferase class-I Alvin_0169 PF00591 Glycosyl transferase family, a/b domain Alvin_0169 PF02885 Glycosyl transferase family, helical bundle domain Alvin_0170 PF00218 Indole-3-glycerol phosphate synthase Alvin_0171 PF00027 Cyclic nucleotide-binding domain Alvin_0171 PF13545 Crp-like helix-turn-helix domain Alvin_0172 PF02566 OsmC-like protein Alvin_0173 PF03232 Ubiquinone biosynthesis protein COQ7 Alvin_0176 PF00572 Ribosomal protein L13 Alvin_0177 PF00380 Ribosomal protein S9/S16 Alvin_0180 PF10544 T5orf172 domain Alvin_0183 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_0183 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_0183 PF08447 PAS fold Alvin_0183 PF08447 PAS fold Alvin_0184 PF02872 5'-nucleotidase, C-terminal domain Alvin_0184 PF00149 Calcineurin-like phosphoesterase Alvin_0185 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Alvin_0186 PF00682 HMGL-like Alvin_0186 PF02436 Conserved carboxylase domain Alvin_0186 PF00364 Biotin-requiring enzyme Alvin_0188 PF00471 Ribosomal protein L33 Alvin_0189 PF00830 Ribosomal L28 family Alvin_0190 PF04241 Protein of unknown function (DUF423) Alvin_0191 PF04452 RNA methyltransferase Alvin_0192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0192 PF01584 CheW-like domain Alvin_0192 PF01627 Hpt domain Alvin_0192 PF00072 Response regulator receiver domain Alvin_0193 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Alvin_0193 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_0195 PF00072 Response regulator receiver domain Alvin_0196 PF00072 Response regulator receiver domain Alvin_0197 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Alvin_0197 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Alvin_0198 PF02424 ApbE family Alvin_0199 PF03544 Gram-negative bacterial TonB protein C-terminal Alvin_0200 PF02622 Uncharacterized ACR, COG1678 Alvin_0201 PF03652 Holliday junction resolvase Alvin_0202 PF00156 Phosphoribosyl transferase domain Alvin_0203 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Alvin_0203 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Alvin_0204 PF01979 Amidohydrolase family Alvin_0205 PF05159 Capsule polysaccharide biosynthesis protein Alvin_0207 PF10531 SLBB domain Alvin_0207 PF02563 Polysaccharide biosynthesis/export protein Alvin_0208 PF01061 ABC-2 type transporter Alvin_0209 PF00005 ABC transporter Alvin_0211 PF05159 Capsule polysaccharide biosynthesis protein Alvin_0213 PF00535 Glycosyl transferase family 2 Alvin_0214 PF00535 Glycosyl transferase family 2 Alvin_0224 PF13439 Glycosyltransferase Family 4 Alvin_0224 PF00534 Glycosyl transferases group 1 Alvin_0225 PF16363 GDP-mannose 4,6 dehydratase Alvin_0228 PF13340 Putative transposase of IS4/5 family (DUF4096) Alvin_0234 PF00486 Transcriptional regulatory protein, C terminal Alvin_0234 PF00072 Response regulator receiver domain Alvin_0235 PF00672 HAMP domain Alvin_0235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0235 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0236 PF00005 ABC transporter Alvin_0236 PF00664 ABC transporter transmembrane region Alvin_0237 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alvin_0237 PF00529 HlyD membrane-fusion protein of T1SS Alvin_0238 PF02350 UDP-N-acetylglucosamine 2-epimerase Alvin_0239 PF01380 SIS domain Alvin_0240 PF02254 TrkA-N domain Alvin_0240 PF00999 Sodium/hydrogen exchanger family Alvin_0241 PF03109 ABC1 family Alvin_0242 PF01627 Hpt domain Alvin_0242 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_0242 PF00072 Response regulator receiver domain Alvin_0242 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0242 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0242 PF00672 HAMP domain Alvin_0243 PF00484 Carbonic anhydrase Alvin_0244 PF00375 Sodium:dicarboxylate symporter family Alvin_0245 PF00128 Alpha amylase, catalytic domain Alvin_0247 PF02463 RecF/RecN/SMC N terminal domain Alvin_0249 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Alvin_0250 PF01467 Cytidylyltransferase-like Alvin_0250 PF00294 pfkB family carbohydrate kinase Alvin_0251 PF05116 Sucrose-6F-phosphate phosphohydrolase Alvin_0251 PF05166 YcgL domain Alvin_0252 PF00534 Glycosyl transferases group 1 Alvin_0252 PF00862 Sucrose synthase Alvin_0254 PF00994 Probable molybdopterin binding domain Alvin_0254 PF02464 Competence-damaged protein Alvin_0254 PF18146 Damage-inducible protein CinA KH domain Alvin_0256 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alvin_0257 PF00873 AcrB/AcrD/AcrF family Alvin_0259 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Alvin_0261 PF00072 Response regulator receiver domain Alvin_0262 PF14743 DNA ligase OB-like domain Alvin_0262 PF01068 ATP dependent DNA ligase domain Alvin_0263 PF01180 Dihydroorotate dehydrogenase Alvin_0264 PF10371 Domain of unknown function Alvin_0264 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Alvin_0264 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Alvin_0264 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Alvin_0264 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alvin_0265 PF00583 Acetyltransferase (GNAT) family Alvin_0270 PF00425 chorismate binding enzyme Alvin_0270 PF04715 Anthranilate synthase component I, N terminal region Alvin_0271 PF13419 Haloacid dehalogenase-like hydrolase Alvin_0272 PF00834 Ribulose-phosphate 3 epimerase family Alvin_0273 PF00248 Aldo/keto reductase family Alvin_0274 PF03330 Lytic transglycolase Alvin_0274 PF05036 Sporulation related domain Alvin_0275 PF07238 PilZ domain Alvin_0275 PF00535 Glycosyl transferase family 2 Alvin_0275 PF03552 Cellulose synthase Alvin_0275 PF03170 Bacterial cellulose synthase subunit Alvin_0277 PF00486 Transcriptional regulatory protein, C terminal Alvin_0277 PF00072 Response regulator receiver domain Alvin_0278 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0278 PF00672 HAMP domain Alvin_0278 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0279 PF01734 Patatin-like phospholipase Alvin_0280 PF07075 Protein of unknown function (DUF1343) Alvin_0281 PF02547 Queuosine biosynthesis protein Alvin_0283 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Alvin_0285 PF02237 Biotin protein ligase C terminal domain Alvin_0285 PF03099 Biotin/lipoate A/B protein ligase family Alvin_0286 PF03309 Type III pantothenate kinase Alvin_0287 PF03781 Sulfatase-modifying factor enzyme 1 Alvin_0287 PF00069 Protein kinase domain Alvin_0292 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alvin_0292 PF00364 Biotin-requiring enzyme Alvin_0292 PF02817 e3 binding domain Alvin_0293 PF16078 2-oxoglutarate dehydrogenase N-terminus Alvin_0293 PF02779 Transketolase, pyrimidine binding domain Alvin_0293 PF00676 Dehydrogenase E1 component Alvin_0293 PF16870 2-oxoglutarate dehydrogenase C-terminal Alvin_0295 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Alvin_0295 PF03900 Porphobilinogen deaminase, C-terminal domain Alvin_0296 PF02602 Uroporphyrinogen-III synthase HemD Alvin_0299 PF00111 2Fe-2S iron-sulfur cluster binding domain Alvin_0303 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Alvin_0304 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Alvin_0305 PF01432 Peptidase family M3 Alvin_0308 PF05230 MASE2 domain Alvin_0308 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0309 PF03707 Bacterial signalling protein N terminal repeat Alvin_0309 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0309 PF00563 EAL domain Alvin_0310 PF00072 Response regulator receiver domain Alvin_0311 PF01590 GAF domain Alvin_0311 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0311 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0311 PF08446 PAS fold Alvin_0311 PF00360 Phytochrome region Alvin_0312 PF01116 Fructose-bisphosphate aldolase class-II Alvin_0313 PF00224 Pyruvate kinase, barrel domain Alvin_0313 PF02887 Pyruvate kinase, alpha/beta domain Alvin_0314 PF00162 Phosphoglycerate kinase Alvin_0315 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Alvin_0315 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Alvin_0316 PF00456 Transketolase, thiamine diphosphate binding domain Alvin_0316 PF02780 Transketolase, C-terminal domain Alvin_0316 PF02779 Transketolase, pyrimidine binding domain Alvin_0318 PF00438 S-adenosylmethionine synthetase, N-terminal domain Alvin_0318 PF02772 S-adenosylmethionine synthetase, central domain Alvin_0318 PF02773 S-adenosylmethionine synthetase, C-terminal domain Alvin_0319 PF01209 ubiE/COQ5 methyltransferase family Alvin_0320 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Alvin_0320 PF05221 S-adenosyl-L-homocysteine hydrolase Alvin_0321 PF02219 Methylenetetrahydrofolate reductase Alvin_0325 PF03030 Inorganic H+ pyrophosphatase Alvin_0327 PF02424 ApbE family Alvin_0329 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Alvin_0329 PF00374 Nickel-dependent hydrogenase Alvin_0330 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Alvin_0331 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Alvin_0335 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system Alvin_0336 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Alvin_0337 PF00146 NADH dehydrogenase Alvin_0339 PF03600 Citrate transporter Alvin_0340 PF12697 Alpha/beta hydrolase family Alvin_0340 PF08241 Methyltransferase domain Alvin_0341 PF04403 Paraquat-inducible protein A Alvin_0342 PF02470 MlaD protein Alvin_0344 PF00909 Ammonium Transporter Family Alvin_0345 PF04358 DsrC like protein Alvin_0349 PF01510 N-acetylmuramoyl-L-alanine amidase Alvin_0350 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Alvin_0350 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Alvin_0352 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_0352 PF00672 HAMP domain Alvin_0352 PF02743 Cache domain Alvin_0353 PF00226 DnaJ domain Alvin_0353 PF01556 DnaJ C terminal domain Alvin_0356 PF00682 HMGL-like Alvin_0356 PF08502 LeuA allosteric (dimerisation) domain Alvin_0357 PF03167 Uracil DNA glycosylase superfamily Alvin_0360 PF17757 UvrB interaction domain Alvin_0360 PF00271 Helicase conserved C-terminal domain Alvin_0360 PF04851 Type III restriction enzyme, res subunit Alvin_0360 PF02151 UvrB/uvrC motif Alvin_0360 PF12344 Ultra-violet resistance protein B Alvin_0362 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_0362 PF00672 HAMP domain Alvin_0362 PF17200 Single Cache domain 2 Alvin_0363 PF00672 HAMP domain Alvin_0363 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0363 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0363 PF01627 Hpt domain Alvin_0363 PF00072 Response regulator receiver domain Alvin_0363 PF17149 Periplasmic sensor domain found in signal transduction proteins Alvin_0365 PF03692 Putative zinc- or iron-chelating domain Alvin_0367 PF02899 Phage integrase, N-terminal SAM-like domain Alvin_0367 PF00589 Phage integrase family Alvin_0368 PF04461 Protein of unknown function (DUF520) Alvin_0369 PF13098 Thioredoxin-like domain Alvin_0369 PF10411 Disulfide bond isomerase protein N-terminus Alvin_0371 PF02592 Putative vitamin uptake transporter Alvin_0376 PF00534 Glycosyl transferases group 1 Alvin_0376 PF13439 Glycosyltransferase Family 4 Alvin_0379 PF00528 Binding-protein-dependent transport system inner membrane component Alvin_0380 PF00528 Binding-protein-dependent transport system inner membrane component Alvin_0381 PF00005 ABC transporter Alvin_0382 PF01895 PhoU domain Alvin_0384 PF01464 Transglycosylase SLT domain Alvin_0384 PF01476 LysM domain Alvin_0386 PF00075 RNase H Alvin_0387 PF00929 Exonuclease Alvin_0388 PF00325 Bacterial regulatory proteins, crp family Alvin_0388 PF00027 Cyclic nucleotide-binding domain Alvin_0389 PF00117 Glutamine amidotransferase class-I Alvin_0389 PF06418 CTP synthase N-terminus Alvin_0390 PF00793 DAHP synthetase I family Alvin_0391 PF00113 Enolase, C-terminal TIM barrel domain Alvin_0391 PF03952 Enolase, N-terminal domain Alvin_0392 PF04977 Septum formation initiator Alvin_0393 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Alvin_0394 PF02542 YgbB family Alvin_0395 PF01142 tRNA pseudouridine synthase D (TruD) Alvin_0400 PF12729 Four helix bundle sensory module for signal transduction Alvin_0400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_0400 PF00672 HAMP domain Alvin_0405 PF07722 Peptidase C26 Alvin_0409 PF00762 Ferrochelatase Alvin_0410 PF00155 Aminotransferase class I and II Alvin_0411 PF00132 Bacterial transferase hexapeptide (six repeats) Alvin_0411 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Alvin_0411 PF14602 Hexapeptide repeat of succinyl-transferase Alvin_0412 PF01546 Peptidase family M20/M25/M40 Alvin_0412 PF07687 Peptidase dimerisation domain Alvin_0413 PF03776 Septum formation topological specificity factor MinE Alvin_0414 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alvin_0415 PF03775 Septum formation inhibitor MinC, C-terminal domain Alvin_0415 PF05209 Septum formation inhibitor MinC, N-terminal domain Alvin_0416 PF01230 HIT domain Alvin_0417 PF13662 Toprim domain Alvin_0417 PF02132 RecR protein Alvin_0418 PF02575 YbaB/EbfC DNA-binding family Alvin_0419 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Alvin_0419 PF12170 DNA polymerase III tau subunit V interacting with alpha Alvin_0419 PF12169 DNA polymerase III subunits gamma and tau domain III Alvin_0424 PF00072 Response regulator receiver domain Alvin_0424 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_0424 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0424 PF01627 Hpt domain Alvin_0424 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0424 PF00672 HAMP domain Alvin_0425 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0425 PF03707 Bacterial signalling protein N terminal repeat Alvin_0425 PF00563 EAL domain Alvin_0426 PF00375 Sodium:dicarboxylate symporter family Alvin_0427 PF02875 Mur ligase family, glutamate ligase domain Alvin_0427 PF08245 Mur ligase middle domain Alvin_0430 PF04055 Radical SAM superfamily Alvin_0430 PF00919 Uncharacterized protein family UPF0004 Alvin_0433 PF07804 HipA-like C-terminal domain Alvin_0435 PF00360 Phytochrome region Alvin_0435 PF01590 GAF domain Alvin_0435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0435 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0435 PF08446 PAS fold Alvin_0436 PF16123 Hydroxyacylglutathione hydrolase C-terminus Alvin_0436 PF00753 Metallo-beta-lactamase superfamily Alvin_0437 PF02779 Transketolase, pyrimidine binding domain Alvin_0437 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Alvin_0437 PF02780 Transketolase, C-terminal domain Alvin_0438 PF09190 DALR domain Alvin_0438 PF01406 tRNA synthetases class I (C) catalytic domain Alvin_0440 PF00166 Chaperonin 10 Kd subunit Alvin_0441 PF00118 TCP-1/cpn60 chaperonin family Alvin_0443 PF04430 Protein of unknown function (DUF498/DUF598) Alvin_0444 PF00749 tRNA synthetases class I (E and Q), catalytic domain Alvin_0445 PF05685 Putative restriction endonuclease Alvin_0455 PF02342 TerD domain Alvin_0457 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Alvin_0457 PF00749 tRNA synthetases class I (E and Q), catalytic domain Alvin_0458 PF00563 EAL domain Alvin_0458 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0458 PF03707 Bacterial signalling protein N terminal repeat Alvin_0460 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Alvin_0461 PF00072 Response regulator receiver domain Alvin_0462 PF08443 RimK-like ATP-grasp domain Alvin_0462 PF18030 RimK PreATP-grasp domain Alvin_0463 PF14403 Circularly permuted ATP-grasp type 2 Alvin_0466 PF03631 Virulence factor BrkB Alvin_0467 PF07733 Bacterial DNA polymerase III alpha NTPase domain Alvin_0467 PF01336 OB-fold nucleic acid binding domain Alvin_0467 PF02811 PHP domain Alvin_0467 PF14579 Helix-hairpin-helix motif Alvin_0467 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Alvin_0470 PF00472 RF-1 domain Alvin_0474 PF01370 NAD dependent epimerase/dehydratase family Alvin_0475 PF05161 MOFRL family Alvin_0475 PF13660 Domain of unknown function (DUF4147) Alvin_0477 PF00814 Glycoprotease family Alvin_0479 PF00294 pfkB family carbohydrate kinase Alvin_0481 PF00664 ABC transporter transmembrane region Alvin_0481 PF00005 ABC transporter Alvin_0482 PF00005 ABC transporter Alvin_0482 PF00664 ABC transporter transmembrane region Alvin_0483 PF00141 Peroxidase Alvin_0485 PF00672 HAMP domain Alvin_0485 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0485 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_0485 PF00072 Response regulator receiver domain Alvin_0485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0485 PF01627 Hpt domain Alvin_0486 PF01208 Uroporphyrinogen decarboxylase (URO-D) Alvin_0488 PF01040 UbiA prenyltransferase family Alvin_0490 PF00933 Glycosyl hydrolase family 3 N terminal domain Alvin_0491 PF17862 AAA+ lid domain Alvin_0491 PF00004 ATPase family associated with various cellular activities (AAA) Alvin_0491 PF01434 Peptidase family M41 Alvin_0491 PF06480 FtsH Extracellular Alvin_0493 PF01722 BolA-like protein Alvin_0494 PF16658 Class II release factor RF3, C-terminal domain Alvin_0494 PF00009 Elongation factor Tu GTP binding domain Alvin_0495 PF14698 Argininosuccinate lyase C-terminal Alvin_0495 PF00206 Lyase Alvin_0496 PF00899 ThiF family Alvin_0498 PF01048 Phosphorylase superfamily Alvin_0500 PF02576 RimP N-terminal domain Alvin_0500 PF17384 RimP C-terminal SH3 domain Alvin_0501 PF00575 S1 RNA binding domain Alvin_0501 PF08529 NusA N-terminal domain Alvin_0501 PF13184 NusA-like KH domain Alvin_0502 PF00009 Elongation factor Tu GTP binding domain Alvin_0502 PF11987 Translation-initiation factor 2 Alvin_0502 PF08364 Bacterial translation initiation factor IF-2 associated region Alvin_0502 PF03144 Elongation factor Tu domain 2 Alvin_0502 PF04760 Translation initiation factor IF-2, N-terminal region Alvin_0503 PF02033 Ribosome-binding factor A Alvin_0504 PF16198 tRNA pseudouridylate synthase B C-terminal domain Alvin_0504 PF01509 TruB family pseudouridylate synthase (N terminal domain) Alvin_0504 PF09157 Pseudouridine synthase II TruB, C-terminal Alvin_0505 PF00312 Ribosomal protein S15 Alvin_0506 PF03725 3' exoribonuclease family, domain 2 Alvin_0506 PF00575 S1 RNA binding domain Alvin_0506 PF01138 3' exoribonuclease family, domain 1 Alvin_0506 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Alvin_0506 PF00013 KH domain Alvin_0507 PF14760 Rnk N-terminus Alvin_0507 PF01272 Transcription elongation factor, GreA/GreB, C-term Alvin_0508 PF14403 Circularly permuted ATP-grasp type 2 Alvin_0510 PF01402 Ribbon-helix-helix protein, copG family Alvin_0510 PF08753 NikR C terminal nickel binding domain Alvin_0513 PF00005 ABC transporter Alvin_0516 PF01891 Cobalt uptake substrate-specific transmembrane region Alvin_0520 PF00595 PDZ domain Alvin_0520 PF13180 PDZ domain Alvin_0521 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Alvin_0523 PF08241 Methyltransferase domain Alvin_0524 PF00561 alpha/beta hydrolase fold Alvin_0525 PF00155 Aminotransferase class I and II Alvin_0526 PF06968 Biotin and Thiamin Synthesis associated domain Alvin_0526 PF04055 Radical SAM superfamily Alvin_0527 PF00156 Phosphoribosyl transferase domain Alvin_0538 PF13340 Putative transposase of IS4/5 family (DUF4096) Alvin_0544 PF04168 A predicted alpha-helical domain with a conserved ER motif. Alvin_0544 PF14403 Circularly permuted ATP-grasp type 2 Alvin_0546 PF00005 ABC transporter Alvin_0546 PF17755 UvrA DNA-binding domain Alvin_0546 PF17760 UvrA interaction domain Alvin_0547 PF03692 Putative zinc- or iron-chelating domain Alvin_0548 PF02666 Phosphatidylserine decarboxylase Alvin_0550 PF00266 Aminotransferase class-V Alvin_0552 PF00005 ABC transporter Alvin_0553 PF01297 Zinc-uptake complex component A periplasmic Alvin_0557 PF00873 AcrB/AcrD/AcrF family Alvin_0558 PF00529 HlyD membrane-fusion protein of T1SS Alvin_0558 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alvin_0561 PF16124 RecQ zinc-binding Alvin_0561 PF00270 DEAD/DEAH box helicase Alvin_0561 PF00271 Helicase conserved C-terminal domain Alvin_0561 PF09382 RQC domain Alvin_0561 PF00570 HRDC domain Alvin_0562 PF00485 Phosphoribulokinase / Uridine kinase family Alvin_0563 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0563 PF03707 Bacterial signalling protein N terminal repeat Alvin_0563 PF00563 EAL domain Alvin_0564 PF02508 Rnf-Nqr subunit, membrane protein Alvin_0565 PF04205 FMN-binding domain Alvin_0566 PF03116 NQR2, RnfD, RnfE family Alvin_0567 PF01740 STAS domain Alvin_0567 PF00916 Sulfate permease family Alvin_0568 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Alvin_0568 PF12838 4Fe-4S dicluster domain Alvin_0568 PF13375 RnfC Barrel sandwich hybrid domain Alvin_0568 PF10531 SLBB domain Alvin_0569 PF04060 Putative Fe-S cluster Alvin_0570 PF02508 Rnf-Nqr subunit, membrane protein Alvin_0572 PF01758 Sodium Bile acid symporter family Alvin_0574 PF00916 Sulfate permease family Alvin_0574 PF01740 STAS domain Alvin_0575 PF06463 Molybdenum Cofactor Synthesis C Alvin_0575 PF04055 Radical SAM superfamily Alvin_0576 PF03471 Transporter associated domain Alvin_0576 PF00999 Sodium/hydrogen exchanger family Alvin_0576 PF02080 TrkA-C domain Alvin_0577 PF00106 short chain dehydrogenase Alvin_0578 PF13419 Haloacid dehalogenase-like hydrolase Alvin_0583 PF00474 Sodium:solute symporter family Alvin_0584 PF05016 ParE toxin of type II toxin-antitoxin system, parDE Alvin_0586 PF00873 AcrB/AcrD/AcrF family Alvin_0587 PF00529 HlyD membrane-fusion protein of T1SS Alvin_0587 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alvin_0590 PF05230 MASE2 domain Alvin_0590 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0591 PF00486 Transcriptional regulatory protein, C terminal Alvin_0591 PF00072 Response regulator receiver domain Alvin_0592 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0592 PF01627 Hpt domain Alvin_0592 PF00072 Response regulator receiver domain Alvin_0592 PF01584 CheW-like domain Alvin_0593 PF01739 CheR methyltransferase, SAM binding domain Alvin_0593 PF03705 CheR methyltransferase, all-alpha domain Alvin_0594 PF01339 CheB methylesterase Alvin_0594 PF00072 Response regulator receiver domain Alvin_0595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_0595 PF12729 Four helix bundle sensory module for signal transduction Alvin_0595 PF00672 HAMP domain Alvin_0599 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Alvin_0599 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Alvin_0599 PF17962 Bacterial macroglobulin domain 6 Alvin_0599 PF01835 MG2 domain Alvin_0599 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain Alvin_0599 PF07703 Alpha-2-macroglobulin bait region domain Alvin_0599 PF00207 Alpha-2-macroglobulin family Alvin_0599 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Alvin_0600 PF00905 Penicillin binding protein transpeptidase domain Alvin_0600 PF06832 Penicillin-Binding Protein C-terminus Family Alvin_0600 PF00912 Transglycosylase Alvin_0601 PF07715 TonB-dependent Receptor Plug Domain Alvin_0601 PF00593 TonB dependent receptor Alvin_0603 PF17151 Periplasmic sensor domain Alvin_0603 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0604 PF07497 Rho termination factor, RNA-binding domain Alvin_0604 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alvin_0604 PF07498 Rho termination factor, N-terminal domain Alvin_0605 PF00085 Thioredoxin Alvin_0606 PF00270 DEAD/DEAH box helicase Alvin_0606 PF00271 Helicase conserved C-terminal domain Alvin_0606 PF12300 ATP-dependent RNA helicase RhlB Alvin_0607 PF13419 Haloacid dehalogenase-like hydrolase Alvin_0609 PF01515 Phosphate acetyl/butaryl transferase Alvin_0609 PF07085 DRTGG domain Alvin_0610 PF00871 Acetokinase family Alvin_0611 PF00691 OmpA family Alvin_0611 PF05736 OprF membrane domain Alvin_0612 PF04349 Periplasmic glucan biosynthesis protein, MdoG Alvin_0614 PF00535 Glycosyl transferase family 2 Alvin_0615 PF00232 Glycosyl hydrolase family 1 Alvin_0616 PF00005 ABC transporter Alvin_0616 PF06472 ABC transporter transmembrane region 2 Alvin_0618 PF06165 Glycosyltransferase family 36 Alvin_0618 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Alvin_0618 PF10091 Putative glucoamylase Alvin_0620 PF01098 Cell cycle protein Alvin_0621 PF00905 Penicillin binding protein transpeptidase domain Alvin_0623 PF01040 UbiA prenyltransferase family Alvin_0624 PF00378 Enoyl-CoA hydratase/isomerase Alvin_0625 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Alvin_0626 PF01850 PIN domain Alvin_0627 PF16582 Middle domain of thiamine pyrophosphate Alvin_0627 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alvin_0627 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alvin_0628 PF00425 chorismate binding enzyme Alvin_0629 PF00561 alpha/beta hydrolase fold Alvin_0629 PF00364 Biotin-requiring enzyme Alvin_0632 PF00005 ABC transporter Alvin_0632 PF12848 ABC transporter Alvin_0635 PF00291 Pyridoxal-phosphate dependent enzyme Alvin_0636 PF00883 Cytosol aminopeptidase family, catalytic domain Alvin_0636 PF02789 Cytosol aminopeptidase family, N-terminal domain Alvin_0637 PF03739 Lipopolysaccharide export system permease LptF/LptG Alvin_0639 PF00989 PAS fold Alvin_0639 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0639 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0640 PF00072 Response regulator receiver domain Alvin_0640 PF00196 Bacterial regulatory proteins, luxR family Alvin_0645 PF07715 TonB-dependent Receptor Plug Domain Alvin_0645 PF00593 TonB dependent receptor Alvin_0646 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) Alvin_0647 PF01867 CRISPR associated protein Cas1 Alvin_0649 PF08798 CRISPR associated protein Alvin_0650 PF09704 CRISPR-associated protein (Cas_Cas5) Alvin_0651 PF09344 CT1975-like protein Alvin_0654 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) Alvin_0656 PF18019 HD domain Alvin_0656 PF00271 Helicase conserved C-terminal domain Alvin_0656 PF00270 DEAD/DEAH box helicase Alvin_0657 PF01177 Asp/Glu/Hydantoin racemase Alvin_0663 PF01584 CheW-like domain Alvin_0663 PF00072 Response regulator receiver domain Alvin_0664 PF03705 CheR methyltransferase, all-alpha domain Alvin_0664 PF01739 CheR methyltransferase, SAM binding domain Alvin_0665 PF00460 Flagella basal body rod protein Alvin_0666 PF00460 Flagella basal body rod protein Alvin_0666 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alvin_0667 PF13860 FlgD Ig-like domain Alvin_0667 PF03963 Flagellar hook capping protein - N-terminal region Alvin_0667 PF13861 FlgD Tudor-like domain Alvin_0668 PF07559 Flagellar basal body protein FlaE Alvin_0668 PF00460 Flagella basal body rod protein Alvin_0668 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alvin_0669 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alvin_0669 PF00460 Flagella basal body rod protein Alvin_0670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alvin_0670 PF00460 Flagella basal body rod protein Alvin_0671 PF02107 Flagellar L-ring protein Alvin_0672 PF02119 Flagellar P-ring protein Alvin_0673 PF10135 Rod binding protein Alvin_0673 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Alvin_0674 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alvin_0674 PF00460 Flagella basal body rod protein Alvin_0675 PF00669 Bacterial flagellin N-terminal helical region Alvin_0675 PF00700 Bacterial flagellin C-terminal helical region Alvin_0676 PF03707 Bacterial signalling protein N terminal repeat Alvin_0676 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0676 PF00563 EAL domain Alvin_0677 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Alvin_0679 PF03150 Di-haem cytochrome c peroxidase Alvin_0679 PF00034 Cytochrome c Alvin_0687 PF07715 TonB-dependent Receptor Plug Domain Alvin_0687 PF00593 TonB dependent receptor Alvin_0689 PF00355 Rieske [2Fe-2S] domain Alvin_0690 PF02885 Glycosyl transferase family, helical bundle domain Alvin_0690 PF00591 Glycosyl transferase family, a/b domain Alvin_0693 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Alvin_0694 PF01171 PP-loop family Alvin_0694 PF11734 TilS substrate C-terminal domain Alvin_0694 PF09179 TilS substrate binding domain Alvin_0695 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0695 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_0695 PF00672 HAMP domain Alvin_0695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0695 PF01627 Hpt domain Alvin_0695 PF00072 Response regulator receiver domain Alvin_0696 PF00085 Thioredoxin Alvin_0697 PF00085 Thioredoxin Alvin_0698 PF00072 Response regulator receiver domain Alvin_0698 PF00196 Bacterial regulatory proteins, luxR family Alvin_0699 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0699 PF01627 Hpt domain Alvin_0699 PF00072 Response regulator receiver domain Alvin_0699 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alvin_0699 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0699 PF00989 PAS fold Alvin_0700 PF07689 KaiB domain Alvin_0701 PF07689 KaiB domain Alvin_0702 PF06745 KaiC Alvin_0703 PF00556 Antenna complex alpha/beta subunit Alvin_0704 PF00556 Antenna complex alpha/beta subunit Alvin_0706 PF00556 Antenna complex alpha/beta subunit Alvin_0709 PF00556 Antenna complex alpha/beta subunit Alvin_0710 PF00360 Phytochrome region Alvin_0710 PF13426 PAS domain Alvin_0710 PF08446 PAS fold Alvin_0710 PF01590 GAF domain Alvin_0711 PF00117 Glutamine amidotransferase class-I Alvin_0711 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Alvin_0712 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alvin_0712 PF02142 MGS-like domain Alvin_0712 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Alvin_0713 PF03449 Transcription elongation factor, N-terminal Alvin_0713 PF01272 Transcription elongation factor, GreA/GreB, C-term Alvin_0714 PF10609 NUBPL iron-transfer P-loop NTPase Alvin_0716 PF13614 AAA domain Alvin_0717 PF00106 short chain dehydrogenase Alvin_0720 PF00152 tRNA synthetases class II (D, K and N) Alvin_0720 PF02938 GAD domain Alvin_0720 PF01336 OB-fold nucleic acid binding domain Alvin_0721 PF00293 NUDIX domain Alvin_0722 PF00664 ABC transporter transmembrane region Alvin_0722 PF00005 ABC transporter Alvin_0723 PF13188 PAS domain Alvin_0723 PF00989 PAS fold Alvin_0723 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0723 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0724 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0724 PF00563 EAL domain Alvin_0724 PF03707 Bacterial signalling protein N terminal repeat Alvin_0725 PF01451 Low molecular weight phosphotyrosine protein phosphatase Alvin_0726 PF10150 Ribonuclease E/G family Alvin_0726 PF12111 Polyribonucleotide phosphorylase C terminal Alvin_0726 PF00575 S1 RNA binding domain Alvin_0727 PF00849 RNA pseudouridylate synthase Alvin_0727 PF01479 S4 domain Alvin_0728 PF13419 Haloacid dehalogenase-like hydrolase Alvin_0729 PF01343 Peptidase family S49 Alvin_0734 PF17941 Polyphosphate kinase C-terminal domain 1 Alvin_0734 PF13089 Polyphosphate kinase N-terminal domain Alvin_0734 PF13090 Polyphosphate kinase C-terminal domain 2 Alvin_0734 PF02503 Polyphosphate kinase middle domain Alvin_0735 PF13649 Methyltransferase domain Alvin_0736 PF08003 Protein of unknown function (DUF1698) Alvin_0737 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Alvin_0739 PF01458 Uncharacterized protein family (UPF0051) Alvin_0740 PF00005 ABC transporter Alvin_0741 PF01458 Uncharacterized protein family (UPF0051) Alvin_0742 PF01883 Iron-sulfur cluster assembly protein Alvin_0744 PF02954 Bacterial regulatory protein, Fis family Alvin_0744 PF00072 Response regulator receiver domain Alvin_0744 PF00158 Sigma-54 interaction domain Alvin_0750 PF00072 Response regulator receiver domain Alvin_0750 PF00196 Bacterial regulatory proteins, luxR family Alvin_0751 PF00072 Response regulator receiver domain Alvin_0751 PF01627 Hpt domain Alvin_0751 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0751 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0751 PF00672 HAMP domain Alvin_0751 PF17149 Periplasmic sensor domain found in signal transduction proteins Alvin_0752 PF08448 PAS fold Alvin_0752 PF03705 CheR methyltransferase, all-alpha domain Alvin_0752 PF01739 CheR methyltransferase, SAM binding domain Alvin_0752 PF01339 CheB methylesterase Alvin_0754 PF01568 Molydopterin dinucleotide binding domain Alvin_0754 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alvin_0754 PF00384 Molybdopterin oxidoreductase Alvin_0756 PF01871 AMMECR1 Alvin_0756 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Alvin_0757 PF01875 Memo-like protein Alvin_0759 PF10145 Phage-related minor tail protein Alvin_0759 PF01464 Transglycosylase SLT domain Alvin_0759 PF01551 Peptidase family M23 Alvin_0761 PF01925 Sulfite exporter TauE/SafE Alvin_0763 PF08241 Methyltransferase domain Alvin_0765 PF00561 alpha/beta hydrolase fold Alvin_0766 PF02649 Type I GTP cyclohydrolase folE2 Alvin_0767 PF00348 Polyprenyl synthetase Alvin_0768 PF02609 Exonuclease VII small subunit Alvin_0769 PF01751 Toprim domain Alvin_0769 PF00204 DNA gyrase B Alvin_0769 PF00986 DNA gyrase B subunit, carboxyl terminus Alvin_0769 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0772 PF03023 Lipid II flippase MurJ Alvin_0773 PF01649 Ribosomal protein S20 Alvin_0774 PF01790 Prolipoprotein diacylglyceryl transferase Alvin_0777 PF01975 Survival protein SurE Alvin_0779 PF01551 Peptidase family M23 Alvin_0779 PF01476 LysM domain Alvin_0780 PF04542 Sigma-70 region 2 Alvin_0780 PF00140 Sigma-70 factor, region 1.2 Alvin_0780 PF04539 Sigma-70 region 3 Alvin_0780 PF04545 Sigma-70, region 4 Alvin_0781 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alvin_0784 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alvin_0784 PF00034 Cytochrome c Alvin_0784 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Alvin_0785 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Alvin_0785 PF12801 4Fe-4S binding domain Alvin_0785 PF13746 4Fe-4S dicluster domain Alvin_0787 PF00403 Heavy-metal-associated domain Alvin_0789 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_0789 PF02743 Cache domain Alvin_0789 PF00672 HAMP domain Alvin_0792 PF00795 Carbon-nitrogen hydrolase Alvin_0792 PF02540 NAD synthase Alvin_0793 PF00543 Nitrogen regulatory protein P-II Alvin_0794 PF13525 Outer membrane lipoprotein Alvin_0795 PF01479 S4 domain Alvin_0795 PF00849 RNA pseudouridylate synthase Alvin_0798 PF01327 Polypeptide deformylase Alvin_0799 PF00595 PDZ domain Alvin_0799 PF03572 Peptidase family S41 Alvin_0799 PF11818 C-terminal domain of tail specific protease (DUF3340) Alvin_0799 PF17804 Tail specific protease N-terminal domain Alvin_0800 PF04262 Glutamate-cysteine ligase Alvin_0801 PF02541 Ppx/GppA phosphatase family Alvin_0802 PF00578 AhpC/TSA family Alvin_0803 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alvin_0803 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alvin_0804 PF00364 Biotin-requiring enzyme Alvin_0804 PF02817 e3 binding domain Alvin_0804 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alvin_0805 PF17831 Pyruvate dehydrogenase E1 component middle domain Alvin_0805 PF00456 Transketolase, thiamine diphosphate binding domain Alvin_0807 PF00374 Nickel-dependent hydrogenase Alvin_0809 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Alvin_0809 PF00175 Oxidoreductase NAD-binding domain Alvin_0811 PF01702 Queuine tRNA-ribosyltransferase Alvin_0812 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Alvin_0813 PF00639 PPIC-type PPIASE domain Alvin_0813 PF09312 SurA N-terminal domain Alvin_0814 PF04453 LPS transport system D Alvin_0814 PF03968 OstA-like protein Alvin_0815 PF01636 Phosphotransferase enzyme family Alvin_0819 PF00072 Response regulator receiver domain Alvin_0820 PF02844 Phosphoribosylglycinamide synthetase, N domain Alvin_0820 PF02843 Phosphoribosylglycinamide synthetase, C domain Alvin_0820 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Alvin_0821 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Alvin_0821 PF00132 Bacterial transferase hexapeptide (six repeats) Alvin_0822 PF01808 AICARFT/IMPCHase bienzyme Alvin_0822 PF02142 MGS-like domain Alvin_0823 PF02954 Bacterial regulatory protein, Fis family Alvin_0824 PF01207 Dihydrouridine synthase (Dus) Alvin_0830 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Alvin_0834 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Alvin_0834 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Alvin_0835 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Alvin_0836 PF02233 NAD(P) transhydrogenase beta subunit Alvin_0838 PF01594 AI-2E family transporter Alvin_0839 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Alvin_0839 PF02896 PEP-utilising enzyme, TIM barrel domain Alvin_0839 PF00391 PEP-utilising enzyme, mobile domain Alvin_0843 PF00924 Mechanosensitive ion channel Alvin_0844 PF13802 Galactose mutarotase-like Alvin_0844 PF17137 Domain of unknown function (DUF5110) Alvin_0844 PF16338 Domain of unknown function (DUF4968) Alvin_0844 PF01055 Glycosyl hydrolases family 31 Alvin_0845 PF02687 FtsX-like permease family Alvin_0845 PF12704 MacB-like periplasmic core domain Alvin_0846 PF00005 ABC transporter Alvin_0848 PF03772 Competence protein Alvin_0848 PF13567 Domain of unknown function (DUF4131) Alvin_0848 PF00753 Metallo-beta-lactamase superfamily Alvin_0849 PF02654 Cobalamin-5-phosphate synthase Alvin_0850 PF00300 Histidine phosphatase superfamily (branch 1) Alvin_0851 PF02277 Phosphoribosyltransferase Alvin_0852 PF00593 TonB dependent receptor Alvin_0852 PF07715 TonB-dependent Receptor Plug Domain Alvin_0853 PF00118 TCP-1/cpn60 chaperonin family Alvin_0854 PF00166 Chaperonin 10 Kd subunit Alvin_0855 PF01368 DHH family Alvin_0855 PF17768 RecJ OB domain Alvin_0855 PF02272 DHHA1 domain Alvin_0856 PF04751 Protein of unknown function (DUF615) Alvin_0858 PF10138 vWA found in TerF C terminus Alvin_0860 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Alvin_0861 PF00459 Inositol monophosphatase family Alvin_0862 PF00588 SpoU rRNA Methylase family Alvin_0863 PF00132 Bacterial transferase hexapeptide (six repeats) Alvin_0864 PF02082 Transcriptional regulator Alvin_0865 PF07743 HSCB C-terminal oligomerisation domain Alvin_0867 PF03279 Bacterial lipid A biosynthesis acyltransferase Alvin_0871 PF00005 ABC transporter Alvin_0872 PF00528 Binding-protein-dependent transport system inner membrane component Alvin_0874 PF07715 TonB-dependent Receptor Plug Domain Alvin_0874 PF00593 TonB dependent receptor Alvin_0877 PF02472 Biopolymer transport protein ExbD/TolR Alvin_0878 PF01618 MotA/TolQ/ExbB proton channel family Alvin_0880 PF07660 Secretin and TonB N terminus short domain Alvin_0880 PF00593 TonB dependent receptor Alvin_0880 PF07715 TonB-dependent Receptor Plug Domain Alvin_0883 PF08495 FIST N domain Alvin_0883 PF10442 FIST C domain Alvin_0883 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0883 PF00563 EAL domain Alvin_0884 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_0884 PF00672 HAMP domain Alvin_0884 PF02743 Cache domain Alvin_0885 PF03459 TOBE domain Alvin_0885 PF00005 ABC transporter Alvin_0886 PF00528 Binding-protein-dependent transport system inner membrane component Alvin_0888 PF03459 TOBE domain Alvin_0888 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alvin_0889 PF00929 Exonuclease Alvin_0890 PF00795 Carbon-nitrogen hydrolase Alvin_0891 PF00589 Phage integrase family Alvin_0895 PF13148 Protein of unknown function (DUF3987) Alvin_0903 PF00148 Nitrogenase component 1 type Oxidoreductase Alvin_0904 PF00148 Nitrogenase component 1 type Oxidoreductase Alvin_0905 PF02579 Dinitrogenase iron-molybdenum cofactor Alvin_0906 PF03270 Protein of unknown function, DUF269 Alvin_0908 PF12838 4Fe-4S dicluster domain Alvin_0909 PF01435 Peptidase family M48 Alvin_0910 PF01219 Prokaryotic diacylglycerol kinase Alvin_0911 PF02347 Glycine cleavage system P-protein Alvin_0912 PF08534 Redoxin Alvin_0913 PF02347 Glycine cleavage system P-protein Alvin_0914 PF01597 Glycine cleavage H-protein Alvin_0915 PF08669 Glycine cleavage T-protein C-terminal barrel domain Alvin_0915 PF01571 Aminomethyltransferase folate-binding domain Alvin_0917 PF00133 tRNA synthetases class I (I, L, M and V) Alvin_0917 PF13603 Leucyl-tRNA synthetase, Domain 2 Alvin_0917 PF08264 Anticodon-binding domain of tRNA Alvin_0918 PF04390 Lipopolysaccharide-assembly Alvin_0919 PF00459 Inositol monophosphatase family Alvin_0920 PF00483 Nucleotidyl transferase Alvin_0920 PF01050 Mannose-6-phosphate isomerase Alvin_0921 PF01926 50S ribosome-binding GTPase Alvin_0921 PF06071 Protein of unknown function (DUF933) Alvin_0924 PF00924 Mechanosensitive ion channel Alvin_0924 PF05552 Conserved TM helix Alvin_0927 PF00392 Bacterial regulatory proteins, gntR family Alvin_0927 PF03061 Thioesterase superfamily Alvin_0927 PF07085 DRTGG domain Alvin_0927 PF00571 CBS domain Alvin_0934 PF00072 Response regulator receiver domain Alvin_0934 PF01339 CheB methylesterase Alvin_0935 PF00072 Response regulator receiver domain Alvin_0939 PF00753 Metallo-beta-lactamase superfamily Alvin_0943 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0943 PF00672 HAMP domain Alvin_0943 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0944 PF00486 Transcriptional regulatory protein, C terminal Alvin_0944 PF00072 Response regulator receiver domain Alvin_0945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alvin_0945 PF00529 HlyD membrane-fusion protein of T1SS Alvin_0946 PF00873 AcrB/AcrD/AcrF family Alvin_0948 PF00205 Thiamine pyrophosphate enzyme, central domain Alvin_0948 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alvin_0948 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alvin_0949 PF10369 Small subunit of acetolactate synthase Alvin_0950 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Alvin_0950 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Alvin_0951 PF03061 Thioesterase superfamily Alvin_0952 PF01618 MotA/TolQ/ExbB proton channel family Alvin_0953 PF02472 Biopolymer transport protein ExbD/TolR Alvin_0955 PF04052 TolB amino-terminal domain Alvin_0955 PF07676 WD40-like Beta Propeller Repeat Alvin_0956 PF00691 OmpA family Alvin_0958 PF01966 HD domain Alvin_0958 PF11871 Domain of unknown function (DUF3391) Alvin_0959 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0959 PF00563 EAL domain Alvin_0959 PF03707 Bacterial signalling protein N terminal repeat Alvin_0960 PF01722 BolA-like protein Alvin_0963 PF01614 Bacterial transcriptional regulator Alvin_0963 PF09339 IclR helix-turn-helix domain Alvin_0966 PF00005 ABC transporter Alvin_0968 PF00690 Cation transporter/ATPase, N-terminus Alvin_0968 PF00689 Cation transporting ATPase, C-terminus Alvin_0969 PF00004 ATPase family associated with various cellular activities (AAA) Alvin_0969 PF05362 Lon protease (S16) C-terminal proteolytic domain Alvin_0969 PF02190 ATP-dependent protease La (LON) substrate-binding domain Alvin_0971 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0972 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_0972 PF00672 HAMP domain Alvin_0972 PF16591 Helical bimodular sensor domain Alvin_0973 PF01627 Hpt domain Alvin_0973 PF00512 His Kinase A (phospho-acceptor) domain Alvin_0973 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_0973 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_0973 PF00672 HAMP domain Alvin_0973 PF00072 Response regulator receiver domain Alvin_0976 PF00005 ABC transporter Alvin_0977 PF00990 Diguanylate cyclase, GGDEF domain Alvin_0977 PF03707 Bacterial signalling protein N terminal repeat Alvin_0977 PF00563 EAL domain Alvin_0978 PF08240 Alcohol dehydrogenase GroES-like domain Alvin_0978 PF00107 Zinc-binding dehydrogenase Alvin_0980 PF02824 TGS domain Alvin_0980 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Alvin_0980 PF03129 Anticodon binding domain Alvin_0980 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Alvin_0981 PF05198 Translation initiation factor IF-3, N-terminal domain Alvin_0981 PF00707 Translation initiation factor IF-3, C-terminal domain Alvin_0982 PF01632 Ribosomal protein L35 Alvin_0983 PF00453 Ribosomal protein L20 Alvin_0984 PF01409 tRNA synthetases class II core domain (F) Alvin_0984 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Alvin_0985 PF03483 B3/4 domain Alvin_0985 PF03147 Ferredoxin-fold anticodon binding domain Alvin_0985 PF03484 tRNA synthetase B5 domain Alvin_0985 PF01588 Putative tRNA binding domain Alvin_0985 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Alvin_0986 PF00216 Bacterial DNA-binding protein Alvin_0987 PF13411 MerR HTH family regulatory protein Alvin_0988 PF00561 alpha/beta hydrolase fold Alvin_0990 PF05360 yiaA/B two helix domain Alvin_0992 PF03747 ADP-ribosylglycohydrolase Alvin_0999 PF01427 D-ala-D-ala dipeptidase Alvin_1001 PF01758 Sodium Bile acid symporter family Alvin_1001 PF01758 Sodium Bile acid symporter family Alvin_1006 PF10417 C-terminal domain of 1-Cys peroxiredoxin Alvin_1006 PF00578 AhpC/TSA family Alvin_1010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alvin_1012 PF03831 PhnA domain Alvin_1012 PF08274 PhnA Zinc-Ribbon Alvin_1013 PF04073 Aminoacyl-tRNA editing domain Alvin_1015 PF01618 MotA/TolQ/ExbB proton channel family Alvin_1016 PF02472 Biopolymer transport protein ExbD/TolR Alvin_1017 PF00005 ABC transporter Alvin_1017 PF00664 ABC transporter transmembrane region Alvin_1018 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Alvin_1019 PF02348 Cytidylyltransferase Alvin_1022 PF01479 S4 domain Alvin_1023 PF00462 Glutaredoxin Alvin_1024 PF11940 Domain of unknown function (DUF3458) Ig-like fold Alvin_1024 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Alvin_1024 PF01433 Peptidase family M1 domain Alvin_1026 PF00156 Phosphoribosyl transferase domain Alvin_1027 PF01053 Cys/Met metabolism PLP-dependent enzyme Alvin_1032 PF01381 Helix-turn-helix Alvin_1034 PF09364 XFP N-terminal domain Alvin_1034 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Alvin_1034 PF09363 XFP C-terminal domain Alvin_1037 PF04055 Radical SAM superfamily Alvin_1037 PF00919 Uncharacterized protein family UPF0004 Alvin_1037 PF18693 TRAM domain Alvin_1040 PF00563 EAL domain Alvin_1040 PF08668 HDOD domain Alvin_1042 PF01207 Dihydrouridine synthase (Dus) Alvin_1044 PF00990 Diguanylate cyclase, GGDEF domain Alvin_1044 PF03707 Bacterial signalling protein N terminal repeat Alvin_1044 PF00563 EAL domain Alvin_1050 PF00005 ABC transporter Alvin_1052 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alvin_1054 PF00672 HAMP domain Alvin_1054 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_1054 PF01627 Hpt domain Alvin_1054 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1054 PF00072 Response regulator receiver domain Alvin_1056 PF00072 Response regulator receiver domain Alvin_1056 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1056 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1056 PF01627 Hpt domain Alvin_1057 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1057 PF07730 Histidine kinase Alvin_1058 PF00196 Bacterial regulatory proteins, luxR family Alvin_1058 PF00072 Response regulator receiver domain Alvin_1059 PF08331 Domain of unknown function (DUF1730) Alvin_1061 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Alvin_1062 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Alvin_1063 PF03480 Bacterial extracellular solute-binding protein, family 7 Alvin_1064 PF16199 Radical_SAM C-terminal domain Alvin_1064 PF04055 Radical SAM superfamily Alvin_1067 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1067 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1067 PF02743 Cache domain Alvin_1068 PF00158 Sigma-54 interaction domain Alvin_1068 PF00072 Response regulator receiver domain Alvin_1068 PF02954 Bacterial regulatory protein, Fis family Alvin_1069 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_1069 PF00672 HAMP domain Alvin_1071 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1071 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1072 PF00563 EAL domain Alvin_1072 PF03707 Bacterial signalling protein N terminal repeat Alvin_1072 PF00990 Diguanylate cyclase, GGDEF domain Alvin_1075 PF04349 Periplasmic glucan biosynthesis protein, MdoG Alvin_1076 PF02570 Precorrin-8X methylmutase Alvin_1077 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alvin_1078 PF02571 Precorrin-6x reductase CbiJ/CobK Alvin_1079 PF01292 Prokaryotic cytochrome b561 Alvin_1080 PF00563 EAL domain Alvin_1080 PF00990 Diguanylate cyclase, GGDEF domain Alvin_1080 PF03707 Bacterial signalling protein N terminal repeat Alvin_1082 PF00890 FAD binding domain Alvin_1082 PF14537 Cytochrome c3 Alvin_1083 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alvin_1085 PF03186 CobD/Cbib protein Alvin_1088 PF01225 Mur ligase family, catalytic domain Alvin_1088 PF02875 Mur ligase family, glutamate ligase domain Alvin_1088 PF08245 Mur ligase middle domain Alvin_1089 PF02441 Flavoprotein Alvin_1090 PF13718 GNAT acetyltransferase 2 Alvin_1090 PF17176 tRNA-binding domain Alvin_1090 PF05127 Helicase Alvin_1090 PF08351 Domain of unknown function (DUF1726) Alvin_1092 PF10518 TAT (twin-arginine translocation) pathway signal sequence Alvin_1092 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alvin_1092 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding Alvin_1094 PF12796 Ankyrin repeats (3 copies) Alvin_1095 PF03264 NapC/NirT cytochrome c family, N-terminal region Alvin_1096 PF02445 Quinolinate synthetase A protein Alvin_1098 PF00154 recA bacterial DNA recombination protein Alvin_1099 PF02631 RecX family Alvin_1100 PF01411 tRNA synthetases class II (A) Alvin_1100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Alvin_1100 PF02272 DHHA1 domain Alvin_1101 PF13840 ACT domain Alvin_1101 PF00696 Amino acid kinase family Alvin_1101 PF01842 ACT domain Alvin_1102 PF02599 Global regulator protein family Alvin_1103 PF01624 MutS domain I Alvin_1103 PF05192 MutS domain III Alvin_1103 PF05190 MutS family domain IV Alvin_1103 PF00488 MutS domain V Alvin_1103 PF05188 MutS domain II Alvin_1104 PF05736 OprF membrane domain Alvin_1104 PF00691 OmpA family Alvin_1107 PF01925 Sulfite exporter TauE/SafE Alvin_1108 PF00005 ABC transporter Alvin_1109 PF01061 ABC-2 type transporter Alvin_1110 PF00905 Penicillin binding protein transpeptidase domain Alvin_1110 PF14814 Bifunctional transglycosylase second domain Alvin_1110 PF00912 Transglycosylase Alvin_1115 PF13847 Methyltransferase domain Alvin_1118 PF01747 ATP-sulfurylase Alvin_1118 PF14306 PUA-like domain Alvin_1120 PF13187 4Fe-4S dicluster domain Alvin_1120 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit Alvin_1121 PF00890 FAD binding domain Alvin_1123 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alvin_1128 PF13307 Helicase C-terminal domain Alvin_1128 PF04851 Type III restriction enzyme, res subunit Alvin_1131 PF18073 Rubredoxin metal binding domain Alvin_1132 PF01979 Amidohydrolase family Alvin_1133 PF01293 Phosphoenolpyruvate carboxykinase Alvin_1134 PF00528 Binding-protein-dependent transport system inner membrane component Alvin_1135 PF00528 Binding-protein-dependent transport system inner membrane component Alvin_1136 PF08402 TOBE domain Alvin_1136 PF00005 ABC transporter Alvin_1137 PF13416 Bacterial extracellular solute-binding protein Alvin_1138 PF00977 Histidine biosynthesis protein Alvin_1140 PF07282 Putative transposase DNA-binding domain Alvin_1140 PF01385 Probable transposase Alvin_1140 PF12323 Helix-turn-helix domain Alvin_1141 PF03006 Haemolysin-III related Alvin_1147 PF00563 EAL domain Alvin_1147 PF00990 Diguanylate cyclase, GGDEF domain Alvin_1147 PF08447 PAS fold Alvin_1147 PF08448 PAS fold Alvin_1155 PF06165 Glycosyltransferase family 36 Alvin_1155 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Alvin_1155 PF10091 Putative glucoamylase Alvin_1158 PF03814 Potassium-transporting ATPase A subunit Alvin_1160 PF02669 K+-transporting ATPase, c chain Alvin_1161 PF13493 Domain of unknown function (DUF4118) Alvin_1161 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1161 PF13492 GAF domain Alvin_1161 PF02702 Osmosensitive K+ channel His kinase sensor domain Alvin_1162 PF00486 Transcriptional regulatory protein, C terminal Alvin_1162 PF00072 Response regulator receiver domain Alvin_1166 PF10011 Predicted membrane protein (DUF2254) Alvin_1169 PF01339 CheB methylesterase Alvin_1169 PF01739 CheR methyltransferase, SAM binding domain Alvin_1169 PF03705 CheR methyltransferase, all-alpha domain Alvin_1169 PF08448 PAS fold Alvin_1170 PF08448 PAS fold Alvin_1170 PF08447 PAS fold Alvin_1170 PF00563 EAL domain Alvin_1170 PF00990 Diguanylate cyclase, GGDEF domain Alvin_1171 PF13187 4Fe-4S dicluster domain Alvin_1171 PF04060 Putative Fe-S cluster Alvin_1172 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alvin_1172 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Alvin_1172 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Alvin_1172 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Alvin_1172 PF10371 Domain of unknown function Alvin_1173 PF13237 4Fe-4S dicluster domain Alvin_1173 PF13375 RnfC Barrel sandwich hybrid domain Alvin_1173 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Alvin_1173 PF10531 SLBB domain Alvin_1174 PF03116 NQR2, RnfD, RnfE family Alvin_1175 PF04205 FMN-binding domain Alvin_1176 PF02508 Rnf-Nqr subunit, membrane protein Alvin_1177 PF02508 Rnf-Nqr subunit, membrane protein Alvin_1179 PF00175 Oxidoreductase NAD-binding domain Alvin_1179 PF00970 Oxidoreductase FAD-binding domain Alvin_1179 PF01383 CpcD/allophycocyanin linker domain Alvin_1180 PF01687 Riboflavin kinase Alvin_1180 PF06574 FAD synthetase Alvin_1181 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Alvin_1181 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus Alvin_1182 PF17863 AAA lid domain Alvin_1182 PF01078 Magnesium chelatase, subunit ChlI Alvin_1183 PF17863 AAA lid domain Alvin_1184 PF02954 Bacterial regulatory protein, Fis family Alvin_1184 PF00072 Response regulator receiver domain Alvin_1184 PF00158 Sigma-54 interaction domain Alvin_1186 PF01850 PIN domain Alvin_1188 PF00114 Pilin (bacterial filament) Alvin_1188 PF07963 Prokaryotic N-terminal methylation motif Alvin_1193 PF00005 ABC transporter Alvin_1194 PF13472 GDSL-like Lipase/Acylhydrolase family Alvin_1198 PF02355 Protein export membrane protein Alvin_1198 PF07549 SecD/SecF GG Motif Alvin_1199 PF13721 SecD export protein N-terminal TM region Alvin_1199 PF02355 Protein export membrane protein Alvin_1199 PF07549 SecD/SecF GG Motif Alvin_1200 PF02699 Preprotein translocase subunit Alvin_1201 PF01588 Putative tRNA binding domain Alvin_1201 PF09334 tRNA synthetases class I (M) Alvin_1202 PF10609 NUBPL iron-transfer P-loop NTPase Alvin_1203 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Alvin_1203 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Alvin_1204 PF00210 Ferritin-like domain Alvin_1208 PF08448 PAS fold Alvin_1208 PF00990 Diguanylate cyclase, GGDEF domain Alvin_1212 PF12627 Probable RNA and SrmB- binding site of polymerase A Alvin_1212 PF01743 Poly A polymerase head domain Alvin_1212 PF01966 HD domain Alvin_1213 PF00521 DNA gyrase/topoisomerase IV, subunit A Alvin_1213 PF03989 DNA gyrase C-terminal domain, beta-propeller Alvin_1214 PF00072 Response regulator receiver domain Alvin_1215 PF04364 DNA polymerase III chi subunit, HolC Alvin_1216 PF07977 FabA-like domain Alvin_1217 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Alvin_1217 PF04073 Aminoacyl-tRNA editing domain Alvin_1217 PF03129 Anticodon binding domain Alvin_1219 PF03853 YjeF-related protein N-terminus Alvin_1219 PF01256 Carbohydrate kinase Alvin_1220 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Alvin_1221 PF01520 N-acetylmuramoyl-L-alanine amidase Alvin_1221 PF11741 AMIN domain Alvin_1222 PF01119 DNA mismatch repair protein, C-terminal domain Alvin_1222 PF08676 MutL C terminal dimerisation domain Alvin_1224 PF17209 Hfq protein Alvin_1225 PF01926 50S ribosome-binding GTPase Alvin_1225 PF16360 GTP-binding GTPase Middle Region Alvin_1225 PF13167 GTP-binding GTPase N-terminal Alvin_1226 PF12221 Bacterial membrane protein N terminal Alvin_1226 PF01145 SPFH domain / Band 7 family Alvin_1227 PF01145 SPFH domain / Band 7 family Alvin_1229 PF13393 Histidyl-tRNA synthetase Alvin_1230 PF00709 Adenylosuccinate synthetase Alvin_1232 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Alvin_1232 PF01926 50S ribosome-binding GTPase Alvin_1233 PF00202 Aminotransferase class-III Alvin_1233 PF06968 Biotin and Thiamin Synthesis associated domain Alvin_1233 PF04055 Radical SAM superfamily Alvin_1236 PF00893 Small Multidrug Resistance protein Alvin_1239 PF01027 Inhibitor of apoptosis-promoting Bax1 Alvin_1240 PF03737 Aldolase/RraA Alvin_1243 PF02690 Na+/Pi-cotransporter Alvin_1246 PF01384 Phosphate transporter family Alvin_1247 PF01865 Protein of unknown function DUF47 Alvin_1248 PF09559 Cas6 Crispr Alvin_1251 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Alvin_1251 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Alvin_1252 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Alvin_1252 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Alvin_1253 PF02635 DsrE/DsrF-like family Alvin_1254 PF02635 DsrE/DsrF-like family Alvin_1256 PF04358 DsrC like protein Alvin_1259 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alvin_1259 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Alvin_1261 PF13247 4Fe-4S dicluster domain Alvin_1263 PF07685 CobB/CobQ-like glutamine amidotransferase domain Alvin_1263 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alvin_1266 PF17864 RuvB AAA lid domain Alvin_1266 PF05496 Holliday junction DNA helicase RuvB P-loop domain Alvin_1266 PF05491 RuvB C-terminal winged helix domain Alvin_1273 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Alvin_1273 PF01926 50S ribosome-binding GTPase Alvin_1274 PF13360 PQQ-like domain Alvin_1276 PF03129 Anticodon binding domain Alvin_1276 PF13393 Histidyl-tRNA synthetase Alvin_1279 PF04055 Radical SAM superfamily Alvin_1280 PF00334 Nucleoside diphosphate kinase Alvin_1282 PF03462 PCRF domain Alvin_1282 PF00472 RF-1 domain Alvin_1283 PF00152 tRNA synthetases class II (D, K and N) Alvin_1283 PF01336 OB-fold nucleic acid binding domain Alvin_1285 PF00773 RNB domain Alvin_1286 PF05951 Bacterial protein of unknown function (DUF882) Alvin_1287 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Alvin_1287 PF01464 Transglycosylase SLT domain Alvin_1291 PF00158 Sigma-54 interaction domain Alvin_1291 PF02954 Bacterial regulatory protein, Fis family Alvin_1291 PF01590 GAF domain Alvin_1292 PF07556 Protein of unknown function (DUF1538) Alvin_1295 PF01740 STAS domain Alvin_1295 PF00916 Sulfate permease family Alvin_1296 PF01594 AI-2E family transporter Alvin_1302 PF03976 Polyphosphate kinase 2 (PPK2) Alvin_1310 PF00563 EAL domain Alvin_1310 PF00990 Diguanylate cyclase, GGDEF domain Alvin_1310 PF03707 Bacterial signalling protein N terminal repeat Alvin_1311 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Alvin_1314 PF00595 PDZ domain Alvin_1314 PF13180 PDZ domain Alvin_1315 PF12804 MobA-like NTP transferase domain Alvin_1316 PF03976 Polyphosphate kinase 2 (PPK2) Alvin_1317 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alvin_1317 PF01568 Molydopterin dinucleotide binding domain Alvin_1317 PF10518 TAT (twin-arginine translocation) pathway signal sequence Alvin_1317 PF00384 Molybdopterin oxidoreductase Alvin_1318 PF13247 4Fe-4S dicluster domain Alvin_1321 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE Alvin_1323 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alvin_1323 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alvin_1324 PF00462 Glutaredoxin Alvin_1324 PF08534 Redoxin Alvin_1326 PF02685 Glucokinase Alvin_1327 PF01103 Surface antigen Alvin_1327 PF17243 POTRA domain TamA domain 1 Alvin_1327 PF07244 Surface antigen variable number repeat Alvin_1328 PF04357 TamB, inner membrane protein subunit of TAM complex Alvin_1329 PF03279 Bacterial lipid A biosynthesis acyltransferase Alvin_1332 PF02463 RecF/RecN/SMC N terminal domain Alvin_1332 PF06470 SMC proteins Flexible Hinge Domain Alvin_1333 PF04354 ZipA, C-terminal FtsZ-binding domain Alvin_1334 PF00533 BRCA1 C Terminus (BRCT) domain Alvin_1334 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Alvin_1334 PF01653 NAD-dependent DNA ligase adenylation domain Alvin_1334 PF12826 Helix-hairpin-helix motif Alvin_1334 PF03120 NAD-dependent DNA ligase OB-fold domain Alvin_1337 PF03795 YCII-related domain Alvin_1338 PF04279 Intracellular septation protein A Alvin_1339 PF01235 Sodium:alanine symporter family Alvin_1341 PF00689 Cation transporting ATPase, C-terminus Alvin_1341 PF00690 Cation transporter/ATPase, N-terminus Alvin_1342 PF01126 Heme oxygenase Alvin_1343 PF01590 GAF domain Alvin_1343 PF00360 Phytochrome region Alvin_1343 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1343 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1343 PF08446 PAS fold Alvin_1344 PF01813 ATP synthase subunit D Alvin_1346 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alvin_1350 PF14814 Bifunctional transglycosylase second domain Alvin_1350 PF00905 Penicillin binding protein transpeptidase domain Alvin_1350 PF00912 Transglycosylase Alvin_1351 PF02874 ATP synthase alpha/beta family, beta-barrel domain Alvin_1351 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alvin_1351 PF16886 ATPsynthase alpha/beta subunit N-term extension Alvin_1352 PF01991 ATP synthase (E/31 kDa) subunit Alvin_1355 PF01496 V-type ATPase 116kDa subunit family Alvin_1359 PF00004 ATPase family associated with various cellular activities (AAA) Alvin_1359 PF17871 AAA lid domain Alvin_1359 PF02861 Clp amino terminal domain, pathogenicity island component Alvin_1359 PF10431 C-terminal, D2-small domain, of ClpB protein Alvin_1359 PF07724 AAA domain (Cdc48 subfamily) Alvin_1360 PF13401 AAA domain Alvin_1360 PF01471 Putative peptidoglycan binding domain Alvin_1362 PF01769 Divalent cation transporter Alvin_1362 PF03448 MgtE intracellular N domain Alvin_1362 PF00571 CBS domain Alvin_1363 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Alvin_1364 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alvin_1364 PF03466 LysR substrate binding domain Alvin_1365 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Alvin_1365 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Alvin_1366 PF00101 Ribulose bisphosphate carboxylase, small chain Alvin_1367 PF07728 AAA domain (dynein-related subfamily) Alvin_1367 PF08406 CbbQ/NirQ/NorQ C-terminal Alvin_1368 PF00092 von Willebrand factor type A domain Alvin_1369 PF12729 Four helix bundle sensory module for signal transduction Alvin_1369 PF00672 HAMP domain Alvin_1369 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_1370 PF00486 Transcriptional regulatory protein, C terminal Alvin_1370 PF00072 Response regulator receiver domain Alvin_1371 PF00072 Response regulator receiver domain Alvin_1372 PF00672 HAMP domain Alvin_1372 PF17149 Periplasmic sensor domain found in signal transduction proteins Alvin_1372 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1372 PF00072 Response regulator receiver domain Alvin_1372 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1372 PF01627 Hpt domain Alvin_1373 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_1373 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1373 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1373 PF01627 Hpt domain Alvin_1373 PF00072 Response regulator receiver domain Alvin_1373 PF00672 HAMP domain Alvin_1374 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1374 PF01627 Hpt domain Alvin_1374 PF00672 HAMP domain Alvin_1374 PF17149 Periplasmic sensor domain found in signal transduction proteins Alvin_1374 PF00072 Response regulator receiver domain Alvin_1374 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1375 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alvin_1376 PF00672 HAMP domain Alvin_1376 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1376 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1376 PF01627 Hpt domain Alvin_1376 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_1376 PF00072 Response regulator receiver domain Alvin_1378 PF01037 Lrp/AsnC ligand binding domain Alvin_1379 PF00682 HMGL-like Alvin_1379 PF08502 LeuA allosteric (dimerisation) domain Alvin_1380 PF01966 HD domain Alvin_1380 PF11871 Domain of unknown function (DUF3391) Alvin_1382 PF02463 RecF/RecN/SMC N terminal domain Alvin_1383 PF01513 ATP-NAD kinase Alvin_1384 PF01628 HrcA protein C terminal domain Alvin_1384 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Alvin_1385 PF01025 GrpE Alvin_1386 PF00012 Hsp70 protein Alvin_1387 PF00684 DnaJ central domain Alvin_1387 PF00226 DnaJ domain Alvin_1387 PF01556 DnaJ C terminal domain Alvin_1389 PF00586 AIR synthase related protein, N-terminal domain Alvin_1389 PF02769 AIR synthase related protein, C-terminal domain Alvin_1390 PF00009 Elongation factor Tu GTP binding domain Alvin_1390 PF03144 Elongation factor Tu domain 2 Alvin_1390 PF09106 Elongation factor SelB, winged helix Alvin_1390 PF09107 Elongation factor SelB, winged helix Alvin_1391 PF12390 Selenocysteine synthase N terminal Alvin_1391 PF03841 L-seryl-tRNA selenium transferase Alvin_1392 PF05661 Protein of unknown function (DUF808) Alvin_1396 PF03350 Uncharacterized protein family, UPF0114 Alvin_1397 PF00360 Phytochrome region Alvin_1397 PF01590 GAF domain Alvin_1397 PF00563 EAL domain Alvin_1397 PF00990 Diguanylate cyclase, GGDEF domain Alvin_1399 PF02028 BCCT, betaine/carnitine/choline family transporter Alvin_1401 PF00266 Aminotransferase class-V Alvin_1402 PF01592 NifU-like N terminal domain Alvin_1402 PF01106 NifU-like domain Alvin_1402 PF04324 BFD-like [2Fe-2S] binding domain Alvin_1403 PF06865 Pyrimidine/purine nucleoside phosphorylase Alvin_1404 PF00361 Proton-conducting membrane transporter Alvin_1405 PF00361 Proton-conducting membrane transporter Alvin_1406 PF00361 Proton-conducting membrane transporter Alvin_1407 PF00361 Proton-conducting membrane transporter Alvin_1409 PF00361 Proton-conducting membrane transporter Alvin_1409 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Alvin_1409 PF13244 Domain of unknown function (DUF4040) Alvin_1409 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Alvin_1414 PF13193 AMP-binding enzyme C-terminal domain Alvin_1414 PF00501 AMP-binding enzyme Alvin_1415 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Alvin_1415 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Alvin_1415 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Alvin_1415 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Alvin_1416 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1416 PF00183 Hsp90 protein Alvin_1417 PF05191 Adenylate kinase, active site lid Alvin_1418 PF00085 Thioredoxin Alvin_1420 PF02082 Transcriptional regulator Alvin_1421 PF05175 Methyltransferase small domain Alvin_1422 PF06969 HemN C-terminal domain Alvin_1422 PF04055 Radical SAM superfamily Alvin_1423 PF05697 Bacterial trigger factor protein (TF) Alvin_1423 PF05698 Bacterial trigger factor protein (TF) C-terminus Alvin_1423 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alvin_1424 PF00574 Clp protease Alvin_1425 PF10431 C-terminal, D2-small domain, of ClpB protein Alvin_1425 PF06689 ClpX C4-type zinc finger Alvin_1425 PF07724 AAA domain (Cdc48 subfamily) Alvin_1426 PF02190 ATP-dependent protease La (LON) substrate-binding domain Alvin_1426 PF05362 Lon protease (S16) C-terminal proteolytic domain Alvin_1426 PF00004 ATPase family associated with various cellular activities (AAA) Alvin_1427 PF00216 Bacterial DNA-binding protein Alvin_1428 PF13145 PPIC-type PPIASE domain Alvin_1431 PF00528 Binding-protein-dependent transport system inner membrane component Alvin_1432 PF00528 Binding-protein-dependent transport system inner membrane component Alvin_1432 PF12911 N-terminal TM domain of oligopeptide transport permease C Alvin_1433 PF00005 ABC transporter Alvin_1433 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alvin_1435 PF00210 Ferritin-like domain Alvin_1436 PF00313 'Cold-shock' DNA-binding domain Alvin_1437 PF17854 FtsK alpha domain Alvin_1437 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Alvin_1437 PF01580 FtsK/SpoIIIE family Alvin_1437 PF09397 Ftsk gamma domain Alvin_1438 PF03548 Outer membrane lipoprotein carrier protein LolA Alvin_1439 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alvin_1439 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alvin_1440 PF00535 Glycosyl transferase family 2 Alvin_1441 PF00155 Aminotransferase class I and II Alvin_1446 PF01381 Helix-turn-helix Alvin_1450 PF06480 FtsH Extracellular Alvin_1450 PF01434 Peptidase family M41 Alvin_1450 PF17862 AAA+ lid domain Alvin_1450 PF00004 ATPase family associated with various cellular activities (AAA) Alvin_1451 PF01750 Hydrogenase maturation protease Alvin_1453 PF01292 Prokaryotic cytochrome b561 Alvin_1457 PF00005 ABC transporter Alvin_1461 PF00145 C-5 cytosine-specific DNA methylase Alvin_1462 PF13533 Biotin-lipoyl like Alvin_1463 PF07869 Protein of unknown function (DUF1656) Alvin_1467 PF00107 Zinc-binding dehydrogenase Alvin_1467 PF08240 Alcohol dehydrogenase GroES-like domain Alvin_1469 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Alvin_1473 PF00149 Calcineurin-like phosphoesterase Alvin_1475 PF00012 Hsp70 protein Alvin_1476 PF08323 Starch synthase catalytic domain Alvin_1476 PF00534 Glycosyl transferases group 1 Alvin_1477 PF00128 Alpha amylase, catalytic domain Alvin_1479 PF00753 Metallo-beta-lactamase superfamily Alvin_1482 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) Alvin_1483 PF01026 TatD related DNase Alvin_1484 PF00580 UvrD/REP helicase N-terminal domain Alvin_1484 PF13361 UvrD-like helicase C-terminal domain Alvin_1488 PF00476 DNA polymerase family A Alvin_1488 PF01367 5'-3' exonuclease, C-terminal SAM fold Alvin_1488 PF01612 3'-5' exonuclease Alvin_1488 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Alvin_1489 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_1489 PF01627 Hpt domain Alvin_1489 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1489 PF00672 HAMP domain Alvin_1489 PF00072 Response regulator receiver domain Alvin_1489 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1490 PF01627 Hpt domain Alvin_1490 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1490 PF00072 Response regulator receiver domain Alvin_1490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1490 PF00672 HAMP domain Alvin_1490 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_1491 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_1491 PF00072 Response regulator receiver domain Alvin_1491 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1491 PF00672 HAMP domain Alvin_1491 PF01627 Hpt domain Alvin_1493 PF00271 Helicase conserved C-terminal domain Alvin_1493 PF00176 SNF2 family N-terminal domain Alvin_1493 PF12137 RNA polymerase recycling family C-terminal Alvin_1493 PF18337 RapA N-terminal Tudor like domain Alvin_1493 PF18339 RapA N-terminal Tudor like domain 1 Alvin_1494 PF03966 Trm112p-like protein Alvin_1496 PF00639 PPIC-type PPIASE domain Alvin_1497 PF04319 NifZ domain Alvin_1498 PF03206 Nitrogen fixation protein NifW Alvin_1499 PF00682 HMGL-like Alvin_1501 PF00501 AMP-binding enzyme Alvin_1503 PF00343 Carbohydrate phosphorylase Alvin_1504 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1504 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1505 PF08442 ATP-grasp domain Alvin_1505 PF00549 CoA-ligase Alvin_1506 PF02629 CoA binding domain Alvin_1506 PF00549 CoA-ligase Alvin_1507 PF00266 Aminotransferase class-V Alvin_1508 PF04358 DsrC like protein Alvin_1509 PF07670 Nucleoside recognition Alvin_1509 PF01773 Na+ dependent nucleoside transporter N-terminus Alvin_1509 PF07662 Na+ dependent nucleoside transporter C-terminus Alvin_1510 PF01430 Hsp33 protein Alvin_1511 PF00149 Calcineurin-like phosphoesterase Alvin_1513 PF00694 Aconitase C-terminal domain Alvin_1513 PF00330 Aconitase family (aconitate hydratase) Alvin_1514 PF04356 Protein of unknown function (DUF489) Alvin_1517 PF01522 Polysaccharide deacetylase Alvin_1518 PF01467 Cytidylyltransferase-like Alvin_1518 PF00294 pfkB family carbohydrate kinase Alvin_1519 PF00483 Nucleotidyl transferase Alvin_1520 PF01169 Uncharacterized protein family UPF0016 Alvin_1521 PF11604 Copper binding periplasmic protein CusF Alvin_1522 PF00529 HlyD membrane-fusion protein of T1SS Alvin_1522 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alvin_1523 PF00873 AcrB/AcrD/AcrF family Alvin_1525 PF02421 Ferrous iron transport protein B Alvin_1525 PF07664 Ferrous iron transport protein B C terminus Alvin_1525 PF17910 FeoB cytosolic helical domain Alvin_1525 PF07670 Nucleoside recognition Alvin_1526 PF04023 FeoA domain Alvin_1528 PF02583 Metal-sensitive transcriptional repressor Alvin_1529 PF01545 Cation efflux family Alvin_1530 PF01022 Bacterial regulatory protein, arsR family Alvin_1531 PF03773 Predicted permease Alvin_1534 PF13175 AAA ATPase domain Alvin_1537 PF00535 Glycosyl transferase family 2 Alvin_1538 PF01555 DNA methylase Alvin_1539 PF02463 RecF/RecN/SMC N terminal domain Alvin_1542 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Alvin_1544 PF01053 Cys/Met metabolism PLP-dependent enzyme Alvin_1545 PF01066 CDP-alcohol phosphatidyltransferase Alvin_1546 PF02151 UvrB/uvrC motif Alvin_1546 PF08459 UvrC Helix-hairpin-helix N-terminal Alvin_1546 PF01541 GIY-YIG catalytic domain Alvin_1547 PF00563 EAL domain Alvin_1547 PF08668 HDOD domain Alvin_1548 PF05724 Thiopurine S-methyltransferase (TPMT) Alvin_1550 PF01343 Peptidase family S49 Alvin_1550 PF08496 Peptidase family S49 N-terminal Alvin_1551 PF00303 Thymidylate synthase Alvin_1552 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Alvin_1552 PF01676 Metalloenzyme superfamily Alvin_1553 PF00583 Acetyltransferase (GNAT) family Alvin_1553 PF00696 Amino acid kinase family Alvin_1554 PF00924 Mechanosensitive ion channel Alvin_1554 PF12794 Mechanosensitive ion channel inner membrane domain 1 Alvin_1554 PF12795 Mechanosensitive ion channel porin domain Alvin_1555 PF00582 Universal stress protein family Alvin_1557 PF02080 TrkA-C domain Alvin_1557 PF00999 Sodium/hydrogen exchanger family Alvin_1557 PF02254 TrkA-N domain Alvin_1562 PF01475 Ferric uptake regulator family Alvin_1563 PF00950 ABC 3 transport family Alvin_1564 PF00005 ABC transporter Alvin_1573 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_1573 PF00672 HAMP domain Alvin_1573 PF12729 Four helix bundle sensory module for signal transduction Alvin_1574 PF01339 CheB methylesterase Alvin_1574 PF00072 Response regulator receiver domain Alvin_1575 PF03975 CheD chemotactic sensory transduction Alvin_1576 PF03705 CheR methyltransferase, all-alpha domain Alvin_1576 PF01739 CheR methyltransferase, SAM binding domain Alvin_1577 PF01584 CheW-like domain Alvin_1578 PF00672 HAMP domain Alvin_1578 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_1578 PF02203 Tar ligand binding domain homologue Alvin_1579 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1579 PF02895 Signal transducing histidine kinase, homodimeric domain Alvin_1579 PF01627 Hpt domain Alvin_1579 PF01584 CheW-like domain Alvin_1582 PF00072 Response regulator receiver domain Alvin_1583 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_1583 PF08447 PAS fold Alvin_1583 PF13426 PAS domain Alvin_1585 PF00398 Ribosomal RNA adenine dimethylase Alvin_1587 PF00581 Rhodanese-like domain Alvin_1588 PF02623 FliW protein Alvin_1592 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Alvin_1592 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Alvin_1592 PF02769 AIR synthase related protein, C-terminal domain Alvin_1593 PF08032 RNA 2'-O ribose methyltransferase substrate binding Alvin_1593 PF00588 SpoU rRNA Methylase family Alvin_1594 PF17876 Cold shock domain Alvin_1594 PF08461 Ribonuclease R winged-helix domain Alvin_1594 PF08206 Ribonuclease B OB domain Alvin_1594 PF00773 RNB domain Alvin_1594 PF00575 S1 RNA binding domain Alvin_1595 PF08328 Adenylosuccinate lyase C-terminal Alvin_1595 PF00206 Lyase Alvin_1596 PF02401 LytB protein Alvin_1597 PF01266 FAD dependent oxidoreductase Alvin_1598 PF08245 Mur ligase middle domain Alvin_1598 PF02875 Mur ligase family, glutamate ligase domain Alvin_1599 PF17848 Acetyl-coA carboxylase zinc finger domain Alvin_1599 PF01039 Carboxyl transferase domain Alvin_1600 PF00290 Tryptophan synthase alpha chain Alvin_1601 PF00291 Pyridoxal-phosphate dependent enzyme Alvin_1602 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Alvin_1603 PF01416 tRNA pseudouridine synthase Alvin_1605 PF02774 Semialdehyde dehydrogenase, dimerisation domain Alvin_1605 PF01118 Semialdehyde dehydrogenase, NAD binding domain Alvin_1606 PF00180 Isocitrate/isopropylmalate dehydrogenase Alvin_1607 PF00694 Aconitase C-terminal domain Alvin_1608 PF00330 Aconitase family (aconitate hydratase) Alvin_1616 PF02403 Seryl-tRNA synthetase N-terminal domain Alvin_1616 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Alvin_1618 PF05343 M42 glutamyl aminopeptidase Alvin_1619 PF18419 ATP-grasp-like domain Alvin_1619 PF02655 ATP-grasp domain Alvin_1619 PF04262 Glutamate-cysteine ligase Alvin_1620 PF13537 Glutamine amidotransferase domain Alvin_1620 PF00733 Asparagine synthase Alvin_1622 PF02310 B12 binding domain Alvin_1622 PF00809 Pterin binding enzyme Alvin_1622 PF02965 Vitamin B12 dependent methionine synthase, activation domain Alvin_1622 PF02607 B12 binding domain Alvin_1622 PF02574 Homocysteine S-methyltransferase Alvin_1624 PF00266 Aminotransferase class-V Alvin_1627 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alvin_1627 PF00128 Alpha amylase, catalytic domain Alvin_1628 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alvin_1628 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Alvin_1629 PF02545 Maf-like protein Alvin_1631 PF00149 Calcineurin-like phosphoesterase Alvin_1632 PF00708 Acylphosphatase Alvin_1633 PF03358 NADPH-dependent FMN reductase Alvin_1634 PF00308 Bacterial dnaA protein Alvin_1635 PF01066 CDP-alcohol phosphatidyltransferase Alvin_1636 PF00586 AIR synthase related protein, N-terminal domain Alvin_1636 PF02769 AIR synthase related protein, C-terminal domain Alvin_1637 PF00551 Formyl transferase Alvin_1641 PF00293 NUDIX domain Alvin_1642 PF00486 Transcriptional regulatory protein, C terminal Alvin_1642 PF00072 Response regulator receiver domain Alvin_1643 PF11808 Phosphate regulon sensor protein PhoR Alvin_1643 PF00989 PAS fold Alvin_1643 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1643 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1644 PF00216 Bacterial DNA-binding protein Alvin_1645 PF00575 S1 RNA binding domain Alvin_1646 PF02224 Cytidylate kinase Alvin_1647 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Alvin_1648 PF01985 CRS1 / YhbY (CRM) domain Alvin_1649 PF00692 dUTPase Alvin_1650 PF16363 GDP-mannose 4,6 dehydratase Alvin_1652 PF03937 Flavinator of succinate dehydrogenase Alvin_1653 PF13085 2Fe-2S iron-sulfur cluster binding domain Alvin_1658 PF00230 Major intrinsic protein Alvin_1659 PF00268 Ribonucleotide reductase, small chain Alvin_1660 PF01636 Phosphotransferase enzyme family Alvin_1662 PF02674 Colicin V production protein Alvin_1664 PF02464 Competence-damaged protein Alvin_1668 PF02436 Conserved carboxylase domain Alvin_1668 PF00682 HMGL-like Alvin_1668 PF00364 Biotin-requiring enzyme Alvin_1669 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alvin_1669 PF00289 Biotin carboxylase, N-terminal domain Alvin_1669 PF02785 Biotin carboxylase C-terminal domain Alvin_1671 PF01370 NAD dependent epimerase/dehydratase family Alvin_1671 PF02222 ATP-grasp domain Alvin_1674 PF01032 FecCD transport family Alvin_1675 PF00005 ABC transporter Alvin_1683 PF06228 Haem utilisation ChuX/HutX Alvin_1684 PF04055 Radical SAM superfamily Alvin_1690 PF01032 FecCD transport family Alvin_1691 PF00005 ABC transporter Alvin_1692 PF00593 TonB dependent receptor Alvin_1692 PF07715 TonB-dependent Receptor Plug Domain Alvin_1695 PF14659 Phage integrase, N-terminal SAM-like domain Alvin_1695 PF13356 Arm DNA-binding domain Alvin_1695 PF00589 Phage integrase family Alvin_1702 PF13148 Protein of unknown function (DUF3987) Alvin_1714 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Alvin_1715 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Alvin_1716 PF02565 Recombination protein O C terminal Alvin_1716 PF11967 Recombination protein O N terminal Alvin_1717 PF01926 50S ribosome-binding GTPase Alvin_1717 PF07650 KH domain Alvin_1718 PF14622 Ribonuclease-III-like Alvin_1718 PF00035 Double-stranded RNA binding motif Alvin_1720 PF10502 Signal peptidase, peptidase S26 Alvin_1721 PF06421 GTP-binding protein LepA C-terminus Alvin_1721 PF00009 Elongation factor Tu GTP binding domain Alvin_1721 PF00679 Elongation factor G C-terminus Alvin_1722 PF17820 PDZ domain Alvin_1722 PF13180 PDZ domain Alvin_1724 PF17188 MucB/RseB C-terminal domain Alvin_1724 PF03888 MucB/RseB N-terminal domain Alvin_1726 PF08281 Sigma-70, region 4 Alvin_1726 PF04542 Sigma-70 region 2 Alvin_1727 PF02910 Fumarate reductase flavoprotein C-term Alvin_1727 PF00890 FAD binding domain Alvin_1728 PF13607 Succinyl-CoA ligase like flavodoxin domain Alvin_1728 PF00583 Acetyltransferase (GNAT) family Alvin_1728 PF13380 CoA binding domain Alvin_1729 PF00850 Histone deacetylase domain Alvin_1730 PF00665 Integrase core domain Alvin_1730 PF13936 Helix-turn-helix domain Alvin_1732 PF01527 Transposase Alvin_1735 PF01329 Pterin 4 alpha carbinolamine dehydratase Alvin_1742 PF02001 Protein of unknown function DUF134 Alvin_1744 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Alvin_1744 PF01926 50S ribosome-binding GTPase Alvin_1745 PF01926 50S ribosome-binding GTPase Alvin_1745 PF13167 GTP-binding GTPase N-terminal Alvin_1745 PF16360 GTP-binding GTPase Middle Region Alvin_1749 PF01895 PhoU domain Alvin_1750 PF16736 Single Cache-like Alvin_1750 PF00989 PAS fold Alvin_1750 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1751 PF00072 Response regulator receiver domain Alvin_1751 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1751 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1751 PF01627 Hpt domain Alvin_1752 PF01569 PAP2 superfamily Alvin_1753 PF00152 tRNA synthetases class II (D, K and N) Alvin_1754 PF01132 Elongation factor P (EF-P) OB domain Alvin_1754 PF09285 Elongation factor P, C-terminal Alvin_1754 PF08207 Elongation factor P (EF-P) KOW-like domain Alvin_1755 PF04055 Radical SAM superfamily Alvin_1757 PF01464 Transglycosylase SLT domain Alvin_1758 PF01471 Putative peptidoglycan binding domain Alvin_1758 PF13401 AAA domain Alvin_1760 PF10609 NUBPL iron-transfer P-loop NTPase Alvin_1760 PF01883 Iron-sulfur cluster assembly protein Alvin_1763 PF00873 AcrB/AcrD/AcrF family Alvin_1764 PF00529 HlyD membrane-fusion protein of T1SS Alvin_1764 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alvin_1765 PF04608 Phosphatidylglycerophosphatase A Alvin_1766 PF02769 AIR synthase related protein, C-terminal domain Alvin_1766 PF00586 AIR synthase related protein, N-terminal domain Alvin_1767 PF01029 NusB family Alvin_1768 PF00885 6,7-dimethyl-8-ribityllumazine synthase Alvin_1769 PF00925 GTP cyclohydrolase II Alvin_1769 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Alvin_1770 PF00677 Lumazine binding domain Alvin_1771 PF00072 Response regulator receiver domain Alvin_1772 PF01872 RibD C-terminal domain Alvin_1772 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Alvin_1773 PF03477 ATP cone domain Alvin_1774 PF00464 Serine hydroxymethyltransferase Alvin_1776 PF00561 alpha/beta hydrolase fold Alvin_1777 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alvin_1777 PF03466 LysR substrate binding domain Alvin_1778 PF00733 Asparagine synthase Alvin_1778 PF13537 Glutamine amidotransferase domain Alvin_1779 PF13439 Glycosyltransferase Family 4 Alvin_1779 PF00534 Glycosyl transferases group 1 Alvin_1785 PF13614 AAA domain Alvin_1788 PF00158 Sigma-54 interaction domain Alvin_1788 PF00072 Response regulator receiver domain Alvin_1788 PF02954 Bacterial regulatory protein, Fis family Alvin_1789 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1789 PF00072 Response regulator receiver domain Alvin_1789 PF09456 RcsC Alpha-Beta-Loop (ABL) Alvin_1789 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1793 PF01209 ubiE/COQ5 methyltransferase family Alvin_1795 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Alvin_1796 PF02390 Putative methyltransferase Alvin_1799 PF00535 Glycosyl transferase family 2 Alvin_1801 PF01943 Polysaccharide biosynthesis protein Alvin_1801 PF14667 Polysaccharide biosynthesis C-terminal domain Alvin_1809 PF00501 AMP-binding enzyme Alvin_1809 PF13193 AMP-binding enzyme C-terminal domain Alvin_1810 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Alvin_1810 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Alvin_1812 PF13537 Glutamine amidotransferase domain Alvin_1812 PF00733 Asparagine synthase Alvin_1814 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alvin_1815 PF17151 Periplasmic sensor domain Alvin_1815 PF00990 Diguanylate cyclase, GGDEF domain Alvin_1816 PF00403 Heavy-metal-associated domain Alvin_1817 PF07685 CobB/CobQ-like glutamine amidotransferase domain Alvin_1817 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alvin_1818 PF01595 Cyclin M transmembrane N-terminal domain Alvin_1818 PF03471 Transporter associated domain Alvin_1818 PF00571 CBS domain Alvin_1819 PF01595 Cyclin M transmembrane N-terminal domain Alvin_1819 PF00571 CBS domain Alvin_1819 PF03471 Transporter associated domain Alvin_1825 PF00005 ABC transporter Alvin_1826 PF01032 FecCD transport family Alvin_1829 PF00842 Alanine racemase, C-terminal domain Alvin_1829 PF01168 Alanine racemase, N-terminal domain Alvin_1834 PF02660 Glycerol-3-phosphate acyltransferase Alvin_1835 PF00561 alpha/beta hydrolase fold Alvin_1836 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1836 PF00989 PAS fold Alvin_1836 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1839 PF00814 Glycoprotease family Alvin_1840 PF01165 Ribosomal protein S21 Alvin_1842 PF08278 DNA primase DnaG DnaB-binding Alvin_1842 PF13662 Toprim domain Alvin_1842 PF08275 DNA primase catalytic core, N-terminal domain Alvin_1842 PF01807 CHC2 zinc finger Alvin_1842 PF10410 DnaB-helicase binding domain of primase Alvin_1843 PF00140 Sigma-70 factor, region 1.2 Alvin_1843 PF04545 Sigma-70, region 4 Alvin_1843 PF04539 Sigma-70 region 3 Alvin_1843 PF04542 Sigma-70 region 2 Alvin_1843 PF03979 Sigma-70 factor, region 1.1 Alvin_1843 PF04546 Sigma-70, non-essential region Alvin_1844 PF00005 ABC transporter Alvin_1844 PF00664 ABC transporter transmembrane region Alvin_1845 PF00717 Peptidase S24-like Alvin_1845 PF13443 Cro/C1-type HTH DNA-binding domain Alvin_1846 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alvin_1846 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Alvin_1847 PF00317 Ribonucleotide reductase, all-alpha domain Alvin_1847 PF02867 Ribonucleotide reductase, barrel domain Alvin_1847 PF03477 ATP cone domain Alvin_1848 PF00463 Isocitrate lyase family Alvin_1849 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Alvin_1849 PF01243 Pyridoxamine 5'-phosphate oxidase Alvin_1851 PF05173 Dihydrodipicolinate reductase, C-terminus Alvin_1851 PF01113 Dihydrodipicolinate reductase, N-terminus Alvin_1852 PF00873 AcrB/AcrD/AcrF family Alvin_1854 PF00501 AMP-binding enzyme Alvin_1855 PF00730 HhH-GPD superfamily base excision DNA repair protein Alvin_1855 PF14815 NUDIX domain Alvin_1855 PF10576 Iron-sulfur binding domain of endonuclease III Alvin_1855 PF00633 Helix-hairpin-helix motif Alvin_1856 PF04362 Bacterial Fe(2+) trafficking Alvin_1857 PF00483 Nucleotidyl transferase Alvin_1859 PF00990 Diguanylate cyclase, GGDEF domain Alvin_1859 PF00563 EAL domain Alvin_1859 PF00360 Phytochrome region Alvin_1859 PF01590 GAF domain Alvin_1863 PF01066 CDP-alcohol phosphatidyltransferase Alvin_1865 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Alvin_1865 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Alvin_1865 PF00037 4Fe-4S binding domain Alvin_1866 PF00384 Molybdopterin oxidoreductase Alvin_1866 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Alvin_1866 PF01568 Molydopterin dinucleotide binding domain Alvin_1866 PF12838 4Fe-4S dicluster domain Alvin_1866 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alvin_1867 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Alvin_1868 PF00374 Nickel-dependent hydrogenase Alvin_1872 PF02203 Tar ligand binding domain homologue Alvin_1872 PF00672 HAMP domain Alvin_1872 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_1873 PF09308 LuxQ, periplasmic Alvin_1873 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_1873 PF00072 Response regulator receiver domain Alvin_1873 PF00512 His Kinase A (phospho-acceptor) domain Alvin_1876 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal Alvin_1876 PF02579 Dinitrogenase iron-molybdenum cofactor Alvin_1877 PF00037 4Fe-4S binding domain Alvin_1878 PF06988 NifT/FixU protein Alvin_1879 PF11844 Domain of unknown function (DUF3364) Alvin_1879 PF00148 Nitrogenase component 1 type Oxidoreductase Alvin_1880 PF00148 Nitrogenase component 1 type Oxidoreductase Alvin_1881 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Alvin_1882 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) Alvin_1883 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_1883 PF00672 HAMP domain Alvin_1883 PF02743 Cache domain Alvin_1885 PF09115 DNA polymerase III, delta subunit, C terminal Alvin_1886 PF02223 Thymidylate kinase Alvin_1887 PF02618 YceG-like family Alvin_1888 PF01063 Amino-transferase class IV Alvin_1889 PF00109 Beta-ketoacyl synthase, N-terminal domain Alvin_1889 PF02801 Beta-ketoacyl synthase, C-terminal domain Alvin_1890 PF00550 Phosphopantetheine attachment site Alvin_1892 PF00698 Acyl transferase domain Alvin_1893 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Alvin_1893 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Alvin_1894 PF02504 Fatty acid synthesis protein Alvin_1895 PF01783 Ribosomal L32p protein family Alvin_1897 PF00196 Bacterial regulatory proteins, luxR family Alvin_1897 PF00072 Response regulator receiver domain Alvin_1898 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Alvin_1900 PF13519 von Willebrand factor type A domain Alvin_1900 PF07584 Aerotolerance regulator N-terminal Alvin_1901 PF13519 von Willebrand factor type A domain Alvin_1901 PF07584 Aerotolerance regulator N-terminal Alvin_1904 PF17863 AAA lid domain Alvin_1904 PF07726 ATPase family associated with various cellular activities (AAA) Alvin_1905 PF17228 Sulphur globule protein Alvin_1906 PF02785 Biotin carboxylase C-terminal domain Alvin_1906 PF00289 Biotin carboxylase, N-terminal domain Alvin_1906 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alvin_1907 PF00364 Biotin-requiring enzyme Alvin_1908 PF01220 Dehydroquinase class II Alvin_1909 PF08534 Redoxin Alvin_1910 PF02683 Cytochrome C biogenesis protein transmembrane region Alvin_1910 PF11412 Disulphide bond corrector protein DsbC Alvin_1911 PF03091 CutA1 divalent ion tolerance protein Alvin_1912 PF04186 FxsA cytoplasmic membrane protein Alvin_1916 PF04333 MlaA lipoprotein Alvin_1917 PF00929 Exonuclease Alvin_1918 PF00462 Glutaredoxin Alvin_1919 PF13537 Glutamine amidotransferase domain Alvin_1919 PF00733 Asparagine synthase Alvin_1920 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Alvin_1920 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Alvin_1921 PF00202 Aminotransferase class-III Alvin_1922 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Alvin_1922 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Alvin_1925 PF00920 Dehydratase family Alvin_1926 PF00994 Probable molybdopterin binding domain Alvin_1927 PF00994 Probable molybdopterin binding domain Alvin_1927 PF03454 MoeA C-terminal region (domain IV) Alvin_1927 PF03453 MoeA N-terminal region (domain I and II) Alvin_1928 PF02597 ThiS family Alvin_1931 PF02913 FAD linked oxidases, C-terminal domain Alvin_1931 PF01565 FAD binding domain Alvin_1933 PF00483 Nucleotidyl transferase Alvin_1934 PF16363 GDP-mannose 4,6 dehydratase Alvin_1935 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Alvin_1938 PF13186 Iron-sulfur cluster-binding domain Alvin_1938 PF04055 Radical SAM superfamily Alvin_1940 PF00534 Glycosyl transferases group 1 Alvin_1940 PF13579 Glycosyl transferase 4-like domain Alvin_1943 PF01938 TRAM domain Alvin_1943 PF00919 Uncharacterized protein family UPF0004 Alvin_1943 PF04055 Radical SAM superfamily Alvin_1944 PF05050 Methyltransferase FkbM domain Alvin_1951 PF00669 Bacterial flagellin N-terminal helical region Alvin_1951 PF00700 Bacterial flagellin C-terminal helical region Alvin_1953 PF07196 Flagellin hook IN motif Alvin_1953 PF07195 Flagellar hook-associated protein 2 C-terminus Alvin_1953 PF02465 Flagellar hook-associated protein 2 N-terminus Alvin_1954 PF02561 Flagellar protein FliS Alvin_1956 PF00266 Aminotransferase class-V Alvin_1957 PF01625 Peptide methionine sulfoxide reductase Alvin_1958 PF07503 HypF finger Alvin_1958 PF01300 Telomere recombination Alvin_1958 PF17788 HypF Kae1-like domain Alvin_1958 PF00708 Acylphosphatase Alvin_1961 PF00890 FAD binding domain Alvin_1961 PF02910 Fumarate reductase flavoprotein C-term Alvin_1963 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Alvin_1965 PF16363 GDP-mannose 4,6 dehydratase Alvin_1966 PF16363 GDP-mannose 4,6 dehydratase Alvin_1967 PF00535 Glycosyl transferase family 2 Alvin_1971 PF06969 HemN C-terminal domain Alvin_1971 PF04055 Radical SAM superfamily Alvin_1972 PF04055 Radical SAM superfamily Alvin_1972 PF06968 Biotin and Thiamin Synthesis associated domain Alvin_1973 PF00892 EamA-like transporter family Alvin_1975 PF08241 Methyltransferase domain Alvin_1976 PF00072 Response regulator receiver domain Alvin_1977 PF00133 tRNA synthetases class I (I, L, M and V) Alvin_1977 PF08264 Anticodon-binding domain of tRNA Alvin_1977 PF06827 Zinc finger found in FPG and IleRS Alvin_1978 PF01252 Signal peptidase (SPase) II Alvin_1979 PF18030 RimK PreATP-grasp domain Alvin_1979 PF08443 RimK-like ATP-grasp domain Alvin_1981 PF03600 Citrate transporter Alvin_1981 PF02080 TrkA-C domain Alvin_1982 PF00271 Helicase conserved C-terminal domain Alvin_1982 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Alvin_1982 PF00270 DEAD/DEAH box helicase Alvin_1982 PF04408 Helicase associated domain (HA2) Alvin_1982 PF11898 Domain of unknown function (DUF3418) Alvin_1983 PF00072 Response regulator receiver domain Alvin_1983 PF00990 Diguanylate cyclase, GGDEF domain Alvin_1984 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Alvin_1986 PF00266 Aminotransferase class-V Alvin_1987 PF00521 DNA gyrase/topoisomerase IV, subunit A Alvin_1987 PF00521 DNA gyrase/topoisomerase IV, subunit A Alvin_1987 PF03989 DNA gyrase C-terminal domain, beta-propeller Alvin_1987 PF03989 DNA gyrase C-terminal domain, beta-propeller Alvin_1988 PF00563 EAL domain Alvin_1988 PF13188 PAS domain Alvin_1988 PF03707 Bacterial signalling protein N terminal repeat Alvin_1988 PF00990 Diguanylate cyclase, GGDEF domain Alvin_1989 PF01008 Initiation factor 2 subunit family Alvin_1990 PF01979 Amidohydrolase family Alvin_1992 PF00970 Oxidoreductase FAD-binding domain Alvin_1992 PF00111 2Fe-2S iron-sulfur cluster binding domain Alvin_1992 PF00175 Oxidoreductase NAD-binding domain Alvin_1995 PF14528 LAGLIDADG-like domain Alvin_1995 PF00772 DnaB-like helicase N terminal domain Alvin_1995 PF03796 DnaB-like helicase C terminal domain Alvin_1997 PF01281 Ribosomal protein L9, N-terminal domain Alvin_1997 PF03948 Ribosomal protein L9, C-terminal domain Alvin_1999 PF01084 Ribosomal protein S18 Alvin_2000 PF01250 Ribosomal protein S6 Alvin_2004 PF01842 ACT domain Alvin_2005 PF13638 PIN domain Alvin_2005 PF02562 PhoH-like protein Alvin_2007 PF04551 GcpE protein Alvin_2008 PF00293 NUDIX domain Alvin_2009 PF03618 Kinase/pyrophosphorylase Alvin_2013 PF13614 AAA domain Alvin_2014 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) Alvin_2015 PF05958 tRNA (Uracil-5-)-methyltransferase Alvin_2018 PF00270 DEAD/DEAH box helicase Alvin_2018 PF04408 Helicase associated domain (HA2) Alvin_2018 PF00271 Helicase conserved C-terminal domain Alvin_2018 PF08482 ATP-dependent helicase C-terminal Alvin_2019 PF00194 Eukaryotic-type carbonic anhydrase Alvin_2021 PF02446 4-alpha-glucanotransferase Alvin_2024 PF00149 Calcineurin-like phosphoesterase Alvin_2029 PF00092 von Willebrand factor type A domain Alvin_2030 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Alvin_2030 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Alvin_2032 PF00255 Glutathione peroxidase Alvin_2033 PF00175 Oxidoreductase NAD-binding domain Alvin_2033 PF00970 Oxidoreductase FAD-binding domain Alvin_2036 PF00374 Nickel-dependent hydrogenase Alvin_2039 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Alvin_2039 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Alvin_2042 PF01909 Nucleotidyltransferase domain Alvin_2042 PF01966 HD domain Alvin_2042 PF08335 GlnD PII-uridylyltransferase Alvin_2042 PF01842 ACT domain Alvin_2043 PF00557 Metallopeptidase family M24 Alvin_2044 PF00318 Ribosomal protein S2 Alvin_2045 PF00889 Elongation factor TS Alvin_2046 PF00696 Amino acid kinase family Alvin_2047 PF01765 Ribosome recycling factor Alvin_2048 PF01255 Putative undecaprenyl diphosphate synthase Alvin_2050 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Alvin_2050 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Alvin_2050 PF13288 DXP reductoisomerase C-terminal domain Alvin_2051 PF13180 PDZ domain Alvin_2051 PF02163 Peptidase family M50 Alvin_2051 PF17820 PDZ domain Alvin_2052 PF01103 Surface antigen Alvin_2052 PF07244 Surface antigen variable number repeat Alvin_2054 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Alvin_2054 PF00132 Bacterial transferase hexapeptide (six repeats) Alvin_2055 PF07977 FabA-like domain Alvin_2056 PF00132 Bacterial transferase hexapeptide (six repeats) Alvin_2056 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Alvin_2057 PF02684 Lipid-A-disaccharide synthetase Alvin_2058 PF01351 Ribonuclease HII Alvin_2059 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Alvin_2060 PF03435 Saccharopine dehydrogenase NADP binding domain Alvin_2060 PF16653 Saccharopine dehydrogenase C-terminal domain Alvin_2061 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Alvin_2061 PF01276 Orn/Lys/Arg decarboxylase, major domain Alvin_2061 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Alvin_2062 PF03372 Endonuclease/Exonuclease/phosphatase family Alvin_2064 PF03190 Protein of unknown function, DUF255 Alvin_2065 PF10672 S-adenosylmethionine-dependent methyltransferase Alvin_2065 PF17785 PUA-like domain Alvin_2067 PF01300 Telomere recombination Alvin_2069 PF01751 Toprim domain Alvin_2069 PF13368 Topoisomerase C-terminal repeat Alvin_2069 PF01131 DNA topoisomerase Alvin_2070 PF04361 Protein of unknown function (DUF494) Alvin_2071 PF02481 DNA recombination-mediator protein A Alvin_2071 PF17782 DprA winged helix domain Alvin_2073 PF01327 Polypeptide deformylase Alvin_2074 PF00551 Formyl transferase Alvin_2074 PF02911 Formyl transferase, C-terminal domain Alvin_2075 PF01029 NusB family Alvin_2075 PF01189 16S rRNA methyltransferase RsmB/F Alvin_2077 PF00672 HAMP domain Alvin_2077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2078 PF00072 Response regulator receiver domain Alvin_2078 PF00158 Sigma-54 interaction domain Alvin_2078 PF02954 Bacterial regulatory protein, Fis family Alvin_2079 PF02254 TrkA-N domain Alvin_2079 PF02080 TrkA-C domain Alvin_2080 PF02386 Cation transport protein Alvin_2081 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Alvin_2082 PF02153 Prephenate dehydrogenase Alvin_2083 PF00155 Aminotransferase class I and II Alvin_2084 PF01817 Chorismate mutase type II Alvin_2084 PF01842 ACT domain Alvin_2084 PF00800 Prephenate dehydratase Alvin_2085 PF01842 ACT domain Alvin_2085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alvin_2085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alvin_2087 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Alvin_2087 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Alvin_2089 PF01678 Diaminopimelate epimerase Alvin_2091 PF00589 Phage integrase family Alvin_2091 PF02899 Phage integrase, N-terminal SAM-like domain Alvin_2094 PF07228 Stage II sporulation protein E (SpoIIE) Alvin_2094 PF00672 HAMP domain Alvin_2097 PF01740 STAS domain Alvin_2098 PF00753 Metallo-beta-lactamase superfamily Alvin_2102 PF01063 Amino-transferase class IV Alvin_2103 PF03710 Glutamate-ammonia ligase adenylyltransferase Alvin_2103 PF08335 GlnD PII-uridylyltransferase Alvin_2104 PF01263 Aldose 1-epimerase Alvin_2105 PF02896 PEP-utilising enzyme, TIM barrel domain Alvin_2105 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Alvin_2105 PF00391 PEP-utilising enzyme, mobile domain Alvin_2106 PF08264 Anticodon-binding domain of tRNA Alvin_2106 PF10458 Valyl tRNA synthetase tRNA binding arm Alvin_2106 PF00133 tRNA synthetases class I (I, L, M and V) Alvin_2110 PF01435 Peptidase family M48 Alvin_2114 PF14489 QueF-like protein Alvin_2115 PF03193 RsgA GTPase Alvin_2118 PF00313 'Cold-shock' DNA-binding domain Alvin_2119 PF09371 Tex-like protein N-terminal domain Alvin_2119 PF00575 S1 RNA binding domain Alvin_2119 PF17674 HHH domain Alvin_2119 PF16921 Tex protein YqgF-like domain Alvin_2122 PF02673 Bacitracin resistance protein BacA Alvin_2123 PF03447 Homoserine dehydrogenase, NAD binding domain Alvin_2123 PF00742 Homoserine dehydrogenase Alvin_2123 PF01842 ACT domain Alvin_2124 PF00155 Aminotransferase class I and II Alvin_2125 PF17092 Penicillin-binding protein OB-like domain Alvin_2125 PF00912 Transglycosylase Alvin_2125 PF00905 Penicillin binding protein transpeptidase domain Alvin_2126 PF00809 Pterin binding enzyme Alvin_2128 PF00534 Glycosyl transferases group 1 Alvin_2128 PF08323 Starch synthase catalytic domain Alvin_2131 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alvin_2131 PF00128 Alpha amylase, catalytic domain Alvin_2132 PF12832 MFS_1 like family Alvin_2133 PF01264 Chorismate synthase Alvin_2134 PF02321 Outer membrane efflux protein Alvin_2135 PF00211 Adenylate and Guanylate cyclase catalytic domain Alvin_2140 PF02350 UDP-N-acetylglucosamine 2-epimerase Alvin_2144 PF00171 Aldehyde dehydrogenase family Alvin_2145 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alvin_2147 PF01467 Cytidylyltransferase-like Alvin_2149 PF00186 Dihydrofolate reductase Alvin_2150 PF00149 Calcineurin-like phosphoesterase Alvin_2151 PF04379 ApaG domain Alvin_2153 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Alvin_2154 PF00561 alpha/beta hydrolase fold Alvin_2155 PF01472 PUA domain Alvin_2155 PF00696 Amino acid kinase family Alvin_2156 PF01926 50S ribosome-binding GTPase Alvin_2156 PF01018 GTP1/OBG Alvin_2157 PF01016 Ribosomal L27 protein Alvin_2158 PF00829 Ribosomal prokaryotic L21 protein Alvin_2159 PF00348 Polyprenyl synthetase Alvin_2161 PF00285 Citrate synthase, C-terminal domain Alvin_2162 PF00682 HMGL-like Alvin_2162 PF07836 DmpG-like communication domain Alvin_2163 PF04341 Protein of unknown function, DUF485 Alvin_2164 PF00474 Sodium:solute symporter family Alvin_2165 PF00563 EAL domain Alvin_2165 PF00360 Phytochrome region Alvin_2165 PF00990 Diguanylate cyclase, GGDEF domain Alvin_2165 PF01590 GAF domain Alvin_2166 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2166 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2166 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_2166 PF01627 Hpt domain Alvin_2166 PF00072 Response regulator receiver domain Alvin_2166 PF00672 HAMP domain Alvin_2167 PF02872 5'-nucleotidase, C-terminal domain Alvin_2167 PF00149 Calcineurin-like phosphoesterase Alvin_2172 PF01844 HNH endonuclease Alvin_2173 PF01170 Putative RNA methylase family UPF0020 Alvin_2173 PF02926 THUMP domain Alvin_2173 PF10672 S-adenosylmethionine-dependent methyltransferase Alvin_2174 PF00005 ABC transporter Alvin_2175 PF03379 CcmB protein Alvin_2176 PF01578 Cytochrome C assembly protein Alvin_2178 PF03100 CcmE Alvin_2179 PF01578 Cytochrome C assembly protein Alvin_2179 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Alvin_2180 PF08534 Redoxin Alvin_2181 PF03918 Cytochrome C biogenesis protein Alvin_2183 PF01161 Phosphatidylethanolamine-binding protein Alvin_2184 PF03764 Elongation factor G, domain IV Alvin_2184 PF00679 Elongation factor G C-terminus Alvin_2184 PF00009 Elongation factor Tu GTP binding domain Alvin_2184 PF14492 Elongation Factor G, domain II Alvin_2186 PF01471 Putative peptidoglycan binding domain Alvin_2186 PF07486 Cell Wall Hydrolase Alvin_2187 PF09335 SNARE associated Golgi protein Alvin_2188 PF00209 Sodium:neurotransmitter symporter family Alvin_2189 PF00768 D-alanyl-D-alanine carboxypeptidase Alvin_2190 PF00849 RNA pseudouridylate synthase Alvin_2190 PF01479 S4 domain Alvin_2191 PF04079 Segregation and condensation complex subunit ScpB Alvin_2192 PF02616 Segregation and condensation protein ScpA Alvin_2193 PF00579 tRNA synthetases class I (W and Y) Alvin_2194 PF02163 Peptidase family M50 Alvin_2195 PF01300 Telomere recombination Alvin_2196 PF02811 PHP domain Alvin_2200 PF00990 Diguanylate cyclase, GGDEF domain Alvin_2200 PF00563 EAL domain Alvin_2200 PF03707 Bacterial signalling protein N terminal repeat Alvin_2203 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alvin_2204 PF05981 CreA protein Alvin_2208 PF04285 Protein of unknown function (DUF444) Alvin_2209 PF08298 PrkA AAA domain Alvin_2209 PF06798 PrkA serine protein kinase C-terminal domain Alvin_2211 PF00672 HAMP domain Alvin_2211 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_2212 PF00585 C-terminal regulatory domain of Threonine dehydratase Alvin_2212 PF00291 Pyridoxal-phosphate dependent enzyme Alvin_2213 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Alvin_2213 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Alvin_2213 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Alvin_2214 PF01370 NAD dependent epimerase/dehydratase family Alvin_2215 PF04381 Putative exonuclease, RdgC Alvin_2216 PF01595 Cyclin M transmembrane N-terminal domain Alvin_2216 PF03471 Transporter associated domain Alvin_2216 PF00571 CBS domain Alvin_2217 PF07690 Major Facilitator Superfamily Alvin_2218 PF00180 Isocitrate/isopropylmalate dehydrogenase Alvin_2219 PF00313 'Cold-shock' DNA-binding domain Alvin_2220 PF02617 ATP-dependent Clp protease adaptor protein ClpS Alvin_2221 PF10431 C-terminal, D2-small domain, of ClpB protein Alvin_2221 PF02861 Clp amino terminal domain, pathogenicity island component Alvin_2221 PF17871 AAA lid domain Alvin_2221 PF07724 AAA domain (Cdc48 subfamily) Alvin_2221 PF00004 ATPase family associated with various cellular activities (AAA) Alvin_2222 PF02203 Tar ligand binding domain homologue Alvin_2222 PF00672 HAMP domain Alvin_2222 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_2223 PF07685 CobB/CobQ-like glutamine amidotransferase domain Alvin_2223 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alvin_2224 PF02310 B12 binding domain Alvin_2224 PF04055 Radical SAM superfamily Alvin_2225 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alvin_2227 PF01026 TatD related DNase Alvin_2228 PF00291 Pyridoxal-phosphate dependent enzyme Alvin_2230 PF02203 Tar ligand binding domain homologue Alvin_2230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_2230 PF00672 HAMP domain Alvin_2232 PF13466 STAS domain Alvin_2233 PF01339 CheB methylesterase Alvin_2233 PF00072 Response regulator receiver domain Alvin_2234 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_2234 PF00672 HAMP domain Alvin_2234 PF02743 Cache domain Alvin_2235 PF03975 CheD chemotactic sensory transduction Alvin_2236 PF01739 CheR methyltransferase, SAM binding domain Alvin_2236 PF03705 CheR methyltransferase, all-alpha domain Alvin_2237 PF01584 CheW-like domain Alvin_2238 PF02895 Signal transducing histidine kinase, homodimeric domain Alvin_2238 PF01584 CheW-like domain Alvin_2238 PF01627 Hpt domain Alvin_2238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2238 PF09078 CheY binding Alvin_2239 PF00072 Response regulator receiver domain Alvin_2240 PF00271 Helicase conserved C-terminal domain Alvin_2240 PF17757 UvrB interaction domain Alvin_2240 PF02559 CarD-like/TRCF domain Alvin_2240 PF00270 DEAD/DEAH box helicase Alvin_2240 PF03461 TRCF domain Alvin_2243 PF01475 Ferric uptake regulator family Alvin_2244 PF04355 SmpA / OmlA family Alvin_2248 PF07715 TonB-dependent Receptor Plug Domain Alvin_2248 PF00593 TonB dependent receptor Alvin_2249 PF01618 MotA/TolQ/ExbB proton channel family Alvin_2250 PF02472 Biopolymer transport protein ExbD/TolR Alvin_2251 PF02472 Biopolymer transport protein ExbD/TolR Alvin_2255 PF07670 Nucleoside recognition Alvin_2255 PF04023 FeoA domain Alvin_2255 PF07664 Ferrous iron transport protein B C terminus Alvin_2255 PF17910 FeoB cytosolic helical domain Alvin_2255 PF02421 Ferrous iron transport protein B Alvin_2256 PF04023 FeoA domain Alvin_2256 PF07670 Nucleoside recognition Alvin_2256 PF17910 FeoB cytosolic helical domain Alvin_2256 PF02421 Ferrous iron transport protein B Alvin_2256 PF07664 Ferrous iron transport protein B C terminus Alvin_2258 PF07694 5TMR of 5TMR-LYT Alvin_2258 PF00990 Diguanylate cyclase, GGDEF domain Alvin_2259 PF00072 Response regulator receiver domain Alvin_2261 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alvin_2261 PF03466 LysR substrate binding domain Alvin_2262 PF01717 Cobalamin-independent synthase, Catalytic domain Alvin_2262 PF08267 Cobalamin-independent synthase, N-terminal domain Alvin_2263 PF01475 Ferric uptake regulator family Alvin_2266 PF12704 MacB-like periplasmic core domain Alvin_2266 PF02687 FtsX-like permease family Alvin_2266 PF00005 ABC transporter Alvin_2267 PF01297 Zinc-uptake complex component A periplasmic Alvin_2267 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment Alvin_2268 PF03658 RnfH family Ubiquitin Alvin_2269 PF03364 Polyketide cyclase / dehydrase and lipid transport Alvin_2270 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Alvin_2270 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Alvin_2270 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Alvin_2270 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Alvin_2271 PF01434 Peptidase family M41 Alvin_2271 PF00004 ATPase family associated with various cellular activities (AAA) Alvin_2271 PF17862 AAA+ lid domain Alvin_2271 PF06480 FtsH Extracellular Alvin_2272 PF01728 FtsJ-like methyltransferase Alvin_2274 PF01355 High potential iron-sulfur protein Alvin_2275 PF00877 NlpC/P60 family Alvin_2276 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alvin_2277 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Alvin_2278 PF04376 Arginine-tRNA-protein transferase, N terminus Alvin_2278 PF04377 Arginine-tRNA-protein transferase, C terminus Alvin_2279 PF12729 Four helix bundle sensory module for signal transduction Alvin_2279 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_2279 PF00672 HAMP domain Alvin_2280 PF01176 Translation initiation factor 1A / IF-1 Alvin_2281 PF03969 AFG1-like ATPase Alvin_2283 PF13419 Haloacid dehalogenase-like hydrolase Alvin_2284 PF01258 Prokaryotic dksA/traR C4-type zinc finger Alvin_2285 PF00749 tRNA synthetases class I (E and Q), catalytic domain Alvin_2286 PF00990 Diguanylate cyclase, GGDEF domain Alvin_2286 PF00072 Response regulator receiver domain Alvin_2288 PF00483 Nucleotidyl transferase Alvin_2289 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Alvin_2290 PF18073 Rubredoxin metal binding domain Alvin_2291 PF00106 short chain dehydrogenase Alvin_2294 PF03477 ATP cone domain Alvin_2294 PF13597 Anaerobic ribonucleoside-triphosphate reductase Alvin_2306 PF01750 Hydrogenase maturation protease Alvin_2307 PF01292 Prokaryotic cytochrome b561 Alvin_2308 PF00374 Nickel-dependent hydrogenase Alvin_2309 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Alvin_2309 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Alvin_2311 PF00923 Transaldolase/Fructose-6-phosphate aldolase Alvin_2312 PF03741 Integral membrane protein TerC family Alvin_2314 PF00999 Sodium/hydrogen exchanger family Alvin_2315 PF03480 Bacterial extracellular solute-binding protein, family 7 Alvin_2316 PF01627 Hpt domain Alvin_2316 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_2316 PF00072 Response regulator receiver domain Alvin_2316 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2316 PF00672 HAMP domain Alvin_2316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2317 PF00072 Response regulator receiver domain Alvin_2317 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_2317 PF00672 HAMP domain Alvin_2317 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2317 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2317 PF01627 Hpt domain Alvin_2318 PF03705 CheR methyltransferase, all-alpha domain Alvin_2318 PF01739 CheR methyltransferase, SAM binding domain Alvin_2318 PF01339 CheB methylesterase Alvin_2318 PF08448 PAS fold Alvin_2319 PF00672 HAMP domain Alvin_2319 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2319 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2319 PF01627 Hpt domain Alvin_2319 PF00072 Response regulator receiver domain Alvin_2319 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_2322 PF00437 Type II/IV secretion system protein Alvin_2323 PF00437 Type II/IV secretion system protein Alvin_2324 PF01078 Magnesium chelatase, subunit ChlI Alvin_2324 PF13335 Magnesium chelatase, subunit ChlI C-terminal Alvin_2325 PF04380 Membrane fusogenic activity Alvin_2327 PF00543 Nitrogen regulatory protein P-II Alvin_2328 PF00909 Ammonium Transporter Family Alvin_2332 PF00764 Arginosuccinate synthase Alvin_2334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2334 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2334 PF01627 Hpt domain Alvin_2334 PF00072 Response regulator receiver domain Alvin_2334 PF00672 HAMP domain Alvin_2334 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_2335 PF00270 DEAD/DEAH box helicase Alvin_2335 PF00271 Helicase conserved C-terminal domain Alvin_2337 PF01196 Ribosomal protein L17 Alvin_2338 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Alvin_2338 PF01000 RNA polymerase Rpb3/RpoA insert domain Alvin_2338 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Alvin_2339 PF00163 Ribosomal protein S4/S9 N-terminal domain Alvin_2339 PF01479 S4 domain Alvin_2340 PF00411 Ribosomal protein S11 Alvin_2341 PF00416 Ribosomal protein S13/S18 Alvin_2342 PF00444 Ribosomal protein L36 Alvin_2343 PF00344 SecY translocase Alvin_2344 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Alvin_2345 PF00327 Ribosomal protein L30p/L7e Alvin_2346 PF03719 Ribosomal protein S5, C-terminal domain Alvin_2346 PF00333 Ribosomal protein S5, N-terminal domain Alvin_2347 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Alvin_2348 PF00347 Ribosomal protein L6 Alvin_2349 PF00410 Ribosomal protein S8 Alvin_2350 PF00253 Ribosomal protein S14p/S29e Alvin_2351 PF00673 ribosomal L5P family C-terminus Alvin_2351 PF00281 Ribosomal protein L5 Alvin_2352 PF00467 KOW motif Alvin_2352 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Alvin_2353 PF00238 Ribosomal protein L14p/L23e Alvin_2354 PF00366 Ribosomal protein S17 Alvin_2355 PF00831 Ribosomal L29 protein Alvin_2356 PF00252 Ribosomal protein L16p/L10e Alvin_2357 PF00189 Ribosomal protein S3, C-terminal domain Alvin_2357 PF07650 KH domain Alvin_2358 PF00237 Ribosomal protein L22p/L17e Alvin_2359 PF00203 Ribosomal protein S19 Alvin_2360 PF00181 Ribosomal Proteins L2, RNA binding domain Alvin_2360 PF03947 Ribosomal Proteins L2, C-terminal domain Alvin_2361 PF00276 Ribosomal protein L23 Alvin_2362 PF00573 Ribosomal protein L4/L1 family Alvin_2363 PF00297 Ribosomal protein L3 Alvin_2364 PF00338 Ribosomal protein S10p/S20e Alvin_2365 PF03143 Elongation factor Tu C-terminal domain Alvin_2365 PF03144 Elongation factor Tu domain 2 Alvin_2365 PF00009 Elongation factor Tu GTP binding domain Alvin_2366 PF03144 Elongation factor Tu domain 2 Alvin_2366 PF00679 Elongation factor G C-terminus Alvin_2366 PF03764 Elongation factor G, domain IV Alvin_2366 PF14492 Elongation Factor G, domain II Alvin_2366 PF00009 Elongation factor Tu GTP binding domain Alvin_2367 PF00177 Ribosomal protein S7p/S5e Alvin_2368 PF00164 Ribosomal protein S12/S23 Alvin_2369 PF04998 RNA polymerase Rpb1, domain 5 Alvin_2369 PF05000 RNA polymerase Rpb1, domain 4 Alvin_2369 PF04983 RNA polymerase Rpb1, domain 3 Alvin_2369 PF00623 RNA polymerase Rpb1, domain 2 Alvin_2369 PF04997 RNA polymerase Rpb1, domain 1 Alvin_2370 PF04561 RNA polymerase Rpb2, domain 2 Alvin_2370 PF04563 RNA polymerase beta subunit Alvin_2370 PF04565 RNA polymerase Rpb2, domain 3 Alvin_2370 PF10385 RNA polymerase beta subunit external 1 domain Alvin_2370 PF00562 RNA polymerase Rpb2, domain 6 Alvin_2370 PF04560 RNA polymerase Rpb2, domain 7 Alvin_2371 PF00542 Ribosomal protein L7/L12 C-terminal domain Alvin_2371 PF16320 Ribosomal protein L7/L12 dimerisation domain Alvin_2372 PF00466 Ribosomal protein L10 Alvin_2373 PF00687 Ribosomal protein L1p/L10e family Alvin_2374 PF00298 Ribosomal protein L11, RNA binding domain Alvin_2374 PF03946 Ribosomal protein L11, N-terminal domain Alvin_2375 PF02357 Transcription termination factor nusG Alvin_2375 PF00467 KOW motif Alvin_2376 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Alvin_2377 PF03143 Elongation factor Tu C-terminal domain Alvin_2377 PF00009 Elongation factor Tu GTP binding domain Alvin_2377 PF03144 Elongation factor Tu domain 2 Alvin_2378 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Alvin_2378 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Alvin_2378 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Alvin_2380 PF01195 Peptidyl-tRNA hydrolase Alvin_2381 PF14693 Ribosomal protein TL5, C-terminal domain Alvin_2381 PF01386 Ribosomal L25p family Alvin_2382 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Alvin_2382 PF14572 Phosphoribosyl synthetase-associated domain Alvin_2383 PF08544 GHMP kinases C terminal Alvin_2383 PF00288 GHMP kinases N terminal domain Alvin_2385 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Alvin_2385 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Alvin_2385 PF01488 Shikimate / quinate 5-dehydrogenase Alvin_2386 PF00472 RF-1 domain Alvin_2386 PF03462 PCRF domain Alvin_2387 PF05175 Methyltransferase small domain Alvin_2387 PF17827 PrmC N-terminal domain Alvin_2392 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Alvin_2394 PF00990 Diguanylate cyclase, GGDEF domain Alvin_2394 PF00072 Response regulator receiver domain Alvin_2395 PF01627 Hpt domain Alvin_2395 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_2395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2395 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2395 PF00072 Response regulator receiver domain Alvin_2395 PF00672 HAMP domain Alvin_2396 PF03411 Penicillin-insensitive murein endopeptidase Alvin_2397 PF02978 Signal peptide binding domain Alvin_2397 PF00448 SRP54-type protein, GTPase domain Alvin_2397 PF02881 SRP54-type protein, helical bundle domain Alvin_2398 PF01578 Cytochrome C assembly protein Alvin_2408 PF14659 Phage integrase, N-terminal SAM-like domain Alvin_2408 PF00589 Phage integrase family Alvin_2410 PF06804 NlpB/DapX lipoprotein Alvin_2411 PF00701 Dihydrodipicolinate synthetase family Alvin_2412 PF00361 Proton-conducting membrane transporter Alvin_2418 PF00361 Proton-conducting membrane transporter Alvin_2418 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Alvin_2419 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Alvin_2419 PF00361 Proton-conducting membrane transporter Alvin_2420 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Alvin_2421 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Alvin_2422 PF12838 4Fe-4S dicluster domain Alvin_2423 PF00146 NADH dehydrogenase Alvin_2424 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Alvin_2424 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Alvin_2424 PF00384 Molybdopterin oxidoreductase Alvin_2425 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Alvin_2425 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Alvin_2425 PF10531 SLBB domain Alvin_2427 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Alvin_2428 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Alvin_2429 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Alvin_2430 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Alvin_2431 PF03840 Preprotein translocase SecG subunit Alvin_2432 PF00121 Triosephosphate isomerase Alvin_2433 PF01668 SmpB protein Alvin_2438 PF00690 Cation transporter/ATPase, N-terminus Alvin_2438 PF00689 Cation transporting ATPase, C-terminus Alvin_2439 PF00899 ThiF family Alvin_2440 PF03466 LysR substrate binding domain Alvin_2440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alvin_2441 PF00005 ABC transporter Alvin_2441 PF17850 CysA C-terminal regulatory domain Alvin_2441 PF12857 TOBE-like domain Alvin_2442 PF00528 Binding-protein-dependent transport system inner membrane component Alvin_2443 PF00528 Binding-protein-dependent transport system inner membrane component Alvin_2445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alvin_2445 PF03466 LysR substrate binding domain Alvin_2446 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Alvin_2446 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Alvin_2447 PF01507 Phosphoadenosine phosphosulfate reductase family Alvin_2448 PF01507 Phosphoadenosine phosphosulfate reductase family Alvin_2449 PF00009 Elongation factor Tu GTP binding domain Alvin_2450 PF02769 AIR synthase related protein, C-terminal domain Alvin_2450 PF00586 AIR synthase related protein, N-terminal domain Alvin_2451 PF00384 Molybdopterin oxidoreductase Alvin_2451 PF01568 Molydopterin dinucleotide binding domain Alvin_2451 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alvin_2452 PF01568 Molydopterin dinucleotide binding domain Alvin_2452 PF00384 Molybdopterin oxidoreductase Alvin_2452 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alvin_2453 PF13247 4Fe-4S dicluster domain Alvin_2453 PF09163 Formate dehydrogenase N, transmembrane Alvin_2454 PF01292 Prokaryotic cytochrome b561 Alvin_2455 PF07730 Histidine kinase Alvin_2455 PF17200 Single Cache domain 2 Alvin_2456 PF04216 Protein involved in formate dehydrogenase formation Alvin_2460 PF18389 TrmO C-terminal domain Alvin_2460 PF01980 tRNA-methyltransferase O Alvin_2461 PF00072 Response regulator receiver domain Alvin_2462 PF04509 CheC-like family Alvin_2462 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Alvin_2463 PF00360 Phytochrome region Alvin_2463 PF00990 Diguanylate cyclase, GGDEF domain Alvin_2463 PF01590 GAF domain Alvin_2463 PF00563 EAL domain Alvin_2464 PF02743 Cache domain Alvin_2464 PF00672 HAMP domain Alvin_2464 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_2465 PF01584 CheW-like domain Alvin_2466 PF00072 Response regulator receiver domain Alvin_2466 PF01339 CheB methylesterase Alvin_2468 PF03705 CheR methyltransferase, all-alpha domain Alvin_2468 PF01739 CheR methyltransferase, SAM binding domain Alvin_2469 PF00486 Transcriptional regulatory protein, C terminal Alvin_2469 PF00072 Response regulator receiver domain Alvin_2470 PF07194 P2 response regulator binding domain Alvin_2470 PF01627 Hpt domain Alvin_2470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2470 PF02895 Signal transducing histidine kinase, homodimeric domain Alvin_2470 PF01584 CheW-like domain Alvin_2472 PF00072 Response regulator receiver domain Alvin_2472 PF00486 Transcriptional regulatory protein, C terminal Alvin_2473 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_2473 PF12729 Four helix bundle sensory module for signal transduction Alvin_2473 PF00672 HAMP domain Alvin_2474 PF08678 Rsbr N terminal Alvin_2474 PF01740 STAS domain Alvin_2475 PF01740 STAS domain Alvin_2476 PF13581 Histidine kinase-like ATPase domain Alvin_2477 PF13581 Histidine kinase-like ATPase domain Alvin_2479 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2479 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2480 PF00486 Transcriptional regulatory protein, C terminal Alvin_2480 PF00072 Response regulator receiver domain Alvin_2481 PF08411 Exonuclease C-terminal Alvin_2481 PF00929 Exonuclease Alvin_2482 PF01245 Ribosomal protein L19 Alvin_2483 PF01746 tRNA (Guanine-1)-methyltransferase Alvin_2484 PF05239 PRC-barrel domain Alvin_2484 PF01782 RimM N-terminal domain Alvin_2485 PF00886 Ribosomal protein S16 Alvin_2486 PF02163 Peptidase family M50 Alvin_2486 PF17820 PDZ domain Alvin_2488 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2488 PF00072 Response regulator receiver domain Alvin_2488 PF01627 Hpt domain Alvin_2488 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2488 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_2488 PF00672 HAMP domain Alvin_2489 PF04976 DMSO reductase anchor subunit (DmsC) Alvin_2490 PF12800 4Fe-4S binding domain Alvin_2490 PF13247 4Fe-4S dicluster domain Alvin_2491 PF00384 Molybdopterin oxidoreductase Alvin_2491 PF01568 Molydopterin dinucleotide binding domain Alvin_2491 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alvin_2493 PF04204 Homoserine O-succinyltransferase Alvin_2499 PF01654 Cytochrome bd terminal oxidase subunit I Alvin_2500 PF02322 Cytochrome bd terminal oxidase subunit II Alvin_2502 PF05736 OprF membrane domain Alvin_2502 PF00691 OmpA family Alvin_2504 PF01464 Transglycosylase SLT domain Alvin_2504 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Alvin_2505 PF10576 Iron-sulfur binding domain of endonuclease III Alvin_2505 PF00633 Helix-hairpin-helix motif Alvin_2505 PF00730 HhH-GPD superfamily base excision DNA repair protein Alvin_2508 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alvin_2508 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alvin_2509 PF00072 Response regulator receiver domain Alvin_2512 PF00486 Transcriptional regulatory protein, C terminal Alvin_2512 PF00072 Response regulator receiver domain Alvin_2513 PF01627 Hpt domain Alvin_2513 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2513 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_2513 PF00072 Response regulator receiver domain Alvin_2513 PF00672 HAMP domain Alvin_2513 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2514 PF00072 Response regulator receiver domain Alvin_2516 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alvin_2517 PF00873 AcrB/AcrD/AcrF family Alvin_2519 PF01523 Putative modulator of DNA gyrase Alvin_2520 PF01523 Putative modulator of DNA gyrase Alvin_2521 PF00795 Carbon-nitrogen hydrolase Alvin_2523 PF00575 S1 RNA binding domain Alvin_2523 PF10150 Ribonuclease E/G family Alvin_2524 PF02545 Maf-like protein Alvin_2525 PF02590 Predicted SPOUT methyltransferase Alvin_2526 PF02416 mttA/Hcf106 family Alvin_2527 PF02416 mttA/Hcf106 family Alvin_2528 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alvin_2529 PF00873 AcrB/AcrD/AcrF family Alvin_2534 PF17191 RecG wedge domain Alvin_2534 PF00271 Helicase conserved C-terminal domain Alvin_2534 PF00270 DEAD/DEAH box helicase Alvin_2535 PF05685 Putative restriction endonuclease Alvin_2536 PF13406 Transglycosylase SLT domain Alvin_2537 PF01042 Endoribonuclease L-PSP Alvin_2538 PF01259 SAICAR synthetase Alvin_2539 PF01740 STAS domain Alvin_2539 PF00916 Sulfate permease family Alvin_2540 PF00483 Nucleotidyl transferase Alvin_2543 PF04055 Radical SAM superfamily Alvin_2544 PF00293 NUDIX domain Alvin_2545 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Alvin_2546 PF01894 Uncharacterised protein family UPF0047 Alvin_2547 PF00556 Antenna complex alpha/beta subunit Alvin_2548 PF00556 Antenna complex alpha/beta subunit Alvin_2549 PF00556 Antenna complex alpha/beta subunit Alvin_2550 PF00556 Antenna complex alpha/beta subunit Alvin_2551 PF02276 Photosynthetic reaction centre cytochrome C subunit Alvin_2552 PF00124 Photosynthetic reaction centre protein Alvin_2553 PF00124 Photosynthetic reaction centre protein Alvin_2554 PF00556 Antenna complex alpha/beta subunit Alvin_2555 PF00556 Antenna complex alpha/beta subunit Alvin_2556 PF08369 Proto-chlorophyllide reductase 57 kD subunit Alvin_2556 PF00148 Nitrogenase component 1 type Oxidoreductase Alvin_2561 PF00148 Nitrogenase component 1 type Oxidoreductase Alvin_2562 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Alvin_2564 PF00891 O-methyltransferase domain Alvin_2564 PF16864 Dimerisation domain Alvin_2565 PF00348 Polyprenyl synthetase Alvin_2566 PF01593 Flavin containing amine oxidoreductase Alvin_2570 PF01593 Flavin containing amine oxidoreductase Alvin_2571 PF12697 Alpha/beta hydrolase family Alvin_2572 PF04542 Sigma-70 region 2 Alvin_2572 PF04545 Sigma-70, region 4 Alvin_2572 PF00140 Sigma-70 factor, region 1.2 Alvin_2573 PF02600 Disulfide bond formation protein DsbB Alvin_2574 PF01323 DSBA-like thioredoxin domain Alvin_2574 PF00085 Thioredoxin Alvin_2575 PF03209 PUCC protein Alvin_2576 PF00556 Antenna complex alpha/beta subunit Alvin_2577 PF00556 Antenna complex alpha/beta subunit Alvin_2579 PF00556 Antenna complex alpha/beta subunit Alvin_2581 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2581 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2581 PF00672 HAMP domain Alvin_2582 PF00072 Response regulator receiver domain Alvin_2582 PF00486 Transcriptional regulatory protein, C terminal Alvin_2584 PF11202 Phosphoribosyl transferase (PRTase) Alvin_2584 PF15608 PELOTA RNA binding domain Alvin_2587 PF02342 TerD domain Alvin_2588 PF02342 TerD domain Alvin_2591 PF02342 TerD domain Alvin_2593 PF02342 TerD domain Alvin_2594 PF07669 Eco57I restriction-modification methylase Alvin_2594 PF12950 TaqI-like C-terminal specificity domain Alvin_2595 PF01867 CRISPR associated protein Cas1 Alvin_2596 PF01797 Transposase IS200 like Alvin_2597 PF07282 Putative transposase DNA-binding domain Alvin_2597 PF12323 Helix-turn-helix domain Alvin_2597 PF01385 Probable transposase Alvin_2598 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alvin_2598 PF10414 Sirohaem synthase dimerisation region Alvin_2598 PF14824 Sirohaem biosynthesis protein central Alvin_2599 PF00581 Rhodanese-like domain Alvin_2600 PF01206 Sulfurtransferase TusA Alvin_2601 PF13686 DsrE/DsrF/DrsH-like family Alvin_2602 PF00205 Thiamine pyrophosphate enzyme, central domain Alvin_2602 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alvin_2602 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alvin_2603 PF00360 Phytochrome region Alvin_2603 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2603 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2603 PF08446 PAS fold Alvin_2603 PF01590 GAF domain Alvin_2604 PF00072 Response regulator receiver domain Alvin_2605 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2605 PF00072 Response regulator receiver domain Alvin_2605 PF09308 LuxQ, periplasmic Alvin_2606 PF01274 Malate synthase Alvin_2609 PF13439 Glycosyltransferase Family 4 Alvin_2609 PF00534 Glycosyl transferases group 1 Alvin_2610 PF00534 Glycosyl transferases group 1 Alvin_2610 PF13439 Glycosyltransferase Family 4 Alvin_2611 PF01218 Coproporphyrinogen III oxidase Alvin_2612 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2612 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2612 PF00072 Response regulator receiver domain Alvin_2612 PF01627 Hpt domain Alvin_2612 PF17149 Periplasmic sensor domain found in signal transduction proteins Alvin_2612 PF00672 HAMP domain Alvin_2613 PF00072 Response regulator receiver domain Alvin_2613 PF00486 Transcriptional regulatory protein, C terminal Alvin_2614 PF02222 ATP-grasp domain Alvin_2614 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Alvin_2615 PF00731 AIR carboxylase Alvin_2616 PF00437 Type II/IV secretion system protein Alvin_2617 PF00437 Type II/IV secretion system protein Alvin_2618 PF00072 Response regulator receiver domain Alvin_2619 PF00072 Response regulator receiver domain Alvin_2619 PF00486 Transcriptional regulatory protein, C terminal Alvin_2621 PF01627 Hpt domain Alvin_2621 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2621 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2621 PF00672 HAMP domain Alvin_2621 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_2621 PF00072 Response regulator receiver domain Alvin_2622 PF03707 Bacterial signalling protein N terminal repeat Alvin_2622 PF00990 Diguanylate cyclase, GGDEF domain Alvin_2622 PF00563 EAL domain Alvin_2625 PF14535 AMP-binding enzyme C-terminal domain Alvin_2625 PF00501 AMP-binding enzyme Alvin_2627 PF00501 AMP-binding enzyme Alvin_2627 PF14535 AMP-binding enzyme C-terminal domain Alvin_2630 PF02342 TerD domain Alvin_2633 PF04055 Radical SAM superfamily Alvin_2633 PF06969 HemN C-terminal domain Alvin_2634 PF12291 Protein of unknown function (DUF3623) Alvin_2637 PF05239 PRC-barrel domain Alvin_2637 PF03967 Photosynthetic reaction centre, H-chain N-terminal region Alvin_2638 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus Alvin_2638 PF05175 Methyltransferase small domain Alvin_2639 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Alvin_2640 PF11965 Domain of unknown function (DUF3479) Alvin_2640 PF02514 CobN/Magnesium Chelatase Alvin_2641 PF00148 Nitrogenase component 1 type Oxidoreductase Alvin_2641 PF08369 Proto-chlorophyllide reductase 57 kD subunit Alvin_2642 PF00148 Nitrogenase component 1 type Oxidoreductase Alvin_2643 PF07284 2-vinyl bacteriochlorophyllide hydratase (BCHF) Alvin_2644 PF13188 PAS domain Alvin_2644 PF02954 Bacterial regulatory protein, Fis family Alvin_2644 PF13426 PAS domain Alvin_2645 PF01040 UbiA prenyltransferase family Alvin_2649 PF00005 ABC transporter Alvin_2649 PF02687 FtsX-like permease family Alvin_2649 PF12704 MacB-like periplasmic core domain Alvin_2654 PF03572 Peptidase family S41 Alvin_2654 PF17816 PDZ domain Alvin_2658 PF02824 TGS domain Alvin_2658 PF04607 Region found in RelA / SpoT proteins Alvin_2658 PF13291 ACT domain Alvin_2660 PF10017 Histidine-specific methyltransferase, SAM-dependent Alvin_2661 PF12867 DinB superfamily Alvin_2661 PF03781 Sulfatase-modifying factor enzyme 1 Alvin_2665 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Alvin_2665 PF00117 Glutamine amidotransferase class-I Alvin_2666 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2666 PF01627 Hpt domain Alvin_2666 PF00989 PAS fold Alvin_2666 PF00072 Response regulator receiver domain Alvin_2666 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alvin_2666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2668 PF02657 Fe-S metabolism associated domain Alvin_2669 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Alvin_2670 PF00111 2Fe-2S iron-sulfur cluster binding domain Alvin_2670 PF01799 [2Fe-2S] binding domain Alvin_2671 PF00158 Sigma-54 interaction domain Alvin_2671 PF13185 GAF domain Alvin_2671 PF02954 Bacterial regulatory protein, Fis family Alvin_2672 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2672 PF00989 PAS fold Alvin_2673 PF02508 Rnf-Nqr subunit, membrane protein Alvin_2674 PF04060 Putative Fe-S cluster Alvin_2675 PF10531 SLBB domain Alvin_2675 PF13375 RnfC Barrel sandwich hybrid domain Alvin_2675 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Alvin_2675 PF13237 4Fe-4S dicluster domain Alvin_2676 PF03116 NQR2, RnfD, RnfE family Alvin_2677 PF04205 FMN-binding domain Alvin_2678 PF02508 Rnf-Nqr subunit, membrane protein Alvin_2679 PF03658 RnfH family Ubiquitin Alvin_2680 PF01895 PhoU domain Alvin_2682 PF03471 Transporter associated domain Alvin_2682 PF00571 CBS domain Alvin_2683 PF02130 Uncharacterized protein family UPF0054 Alvin_2684 PF02562 PhoH-like protein Alvin_2685 PF01938 TRAM domain Alvin_2685 PF00919 Uncharacterized protein family UPF0004 Alvin_2685 PF04055 Radical SAM superfamily Alvin_2687 PF01184 GPR1/FUN34/yaaH family Alvin_2689 PF07726 ATPase family associated with various cellular activities (AAA) Alvin_2689 PF17863 AAA lid domain Alvin_2690 PF00576 HIUase/Transthyretin family Alvin_2693 PF01882 Protein of unknown function DUF58 Alvin_2695 PF00092 von Willebrand factor type A domain Alvin_2696 PF13519 von Willebrand factor type A domain Alvin_2696 PF07584 Aerotolerance regulator N-terminal Alvin_2699 PF00912 Transglycosylase Alvin_2701 PF00793 DAHP synthetase I family Alvin_2705 PF01814 Hemerythrin HHE cation binding domain Alvin_2706 PF14437 MafB19-like deaminase Alvin_2707 PF00958 GMP synthase C terminal domain Alvin_2707 PF02540 NAD synthase Alvin_2707 PF00117 Glutamine amidotransferase class-I Alvin_2708 PF00571 CBS domain Alvin_2708 PF00478 IMP dehydrogenase / GMP reductase domain Alvin_2709 PF02601 Exonuclease VII, large subunit Alvin_2709 PF13742 OB-fold nucleic acid binding domain Alvin_2711 PF12848 ABC transporter Alvin_2711 PF00005 ABC transporter Alvin_2714 PF00343 Carbohydrate phosphorylase Alvin_2715 PF02558 Ketopantoate reductase PanE/ApbA Alvin_2715 PF08546 Ketopantoate reductase PanE/ApbA C terminal Alvin_2716 PF00501 AMP-binding enzyme Alvin_2716 PF13193 AMP-binding enzyme C-terminal domain Alvin_2716 PF01553 Acyltransferase Alvin_2717 PF13439 Glycosyltransferase Family 4 Alvin_2717 PF00534 Glycosyl transferases group 1 Alvin_2721 PF01965 DJ-1/PfpI family Alvin_2722 PF01180 Dihydroorotate dehydrogenase Alvin_2723 PF00733 Asparagine synthase Alvin_2723 PF13537 Glutamine amidotransferase domain Alvin_2725 PF00128 Alpha amylase, catalytic domain Alvin_2725 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alvin_2725 PF02806 Alpha amylase, C-terminal all-beta domain Alvin_2726 PF00483 Nucleotidyl transferase Alvin_2728 PF05690 Thiazole biosynthesis protein ThiG Alvin_2729 PF02390 Putative methyltransferase Alvin_2730 PF00005 ABC transporter Alvin_2731 PF03649 Uncharacterised protein family (UPF0014) Alvin_2732 PF06039 Malate:quinone oxidoreductase (Mqo) Alvin_2733 PF03600 Citrate transporter Alvin_2734 PF16363 GDP-mannose 4,6 dehydratase Alvin_2735 PF00483 Nucleotidyl transferase Alvin_2736 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Alvin_2737 PF04321 RmlD substrate binding domain Alvin_2739 PF00342 Phosphoglucose isomerase Alvin_2740 PF03466 LysR substrate binding domain Alvin_2740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alvin_2749 PF00101 Ribulose bisphosphate carboxylase, small chain Alvin_2750 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Alvin_2750 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Alvin_2752 PF00916 Sulfate permease family Alvin_2752 PF01740 STAS domain Alvin_2753 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Alvin_2753 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Alvin_2754 PF08323 Starch synthase catalytic domain Alvin_2754 PF00534 Glycosyl transferases group 1 Alvin_2755 PF02261 Aspartate decarboxylase Alvin_2756 PF02569 Pantoate-beta-alanine ligase Alvin_2757 PF02548 Ketopantoate hydroxymethyltransferase Alvin_2758 PF01743 Poly A polymerase head domain Alvin_2758 PF12626 Polymerase A arginine-rich C-terminus Alvin_2758 PF12627 Probable RNA and SrmB- binding site of polymerase A Alvin_2759 PF00556 Antenna complex alpha/beta subunit Alvin_2760 PF00556 Antenna complex alpha/beta subunit Alvin_2762 PF01242 6-pyruvoyl tetrahydropterin synthase Alvin_2763 PF06508 Queuosine biosynthesis protein QueC Alvin_2765 PF01322 Cytochrome C' Alvin_2767 PF00270 DEAD/DEAH box helicase Alvin_2767 PF00271 Helicase conserved C-terminal domain Alvin_2768 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Alvin_2769 PF03063 Prismane/CO dehydrogenase family Alvin_2770 PF17760 UvrA interaction domain Alvin_2770 PF17755 UvrA DNA-binding domain Alvin_2771 PF03819 MazG nucleotide pyrophosphohydrolase domain Alvin_2774 PF07728 AAA domain (dynein-related subfamily) Alvin_2776 PF05762 VWA domain containing CoxE-like protein Alvin_2778 PF01928 CYTH domain Alvin_2778 PF05235 CHAD domain Alvin_2779 PF00672 HAMP domain Alvin_2779 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_2780 PF07690 Major Facilitator Superfamily Alvin_2781 PF00436 Single-strand binding protein family Alvin_2785 PF00004 ATPase family associated with various cellular activities (AAA) Alvin_2786 PF00082 Subtilase family Alvin_2788 PF00270 DEAD/DEAH box helicase Alvin_2788 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Alvin_2788 PF17191 RecG wedge domain Alvin_2789 PF02637 GatB domain Alvin_2789 PF02934 GatB/GatE catalytic domain Alvin_2790 PF00475 Imidazoleglycerol-phosphate dehydratase Alvin_2791 PF00977 Histidine biosynthesis protein Alvin_2792 PF01502 Phosphoribosyl-AMP cyclohydrolase Alvin_2793 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Alvin_2794 PF00902 Sec-independent protein translocase protein (TatC) Alvin_2795 PF03466 LysR substrate binding domain Alvin_2795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alvin_2797 PF00586 AIR synthase related protein, N-terminal domain Alvin_2797 PF02769 AIR synthase related protein, C-terminal domain Alvin_2798 PF01924 Hydrogenase formation hypA family Alvin_2799 PF01455 HupF/HypC family Alvin_2800 PF05175 Methyltransferase small domain Alvin_2801 PF00578 AhpC/TSA family Alvin_2802 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_2802 PF00072 Response regulator receiver domain Alvin_2802 PF01627 Hpt domain Alvin_2802 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2802 PF00672 HAMP domain Alvin_2802 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2803 PF00072 Response regulator receiver domain Alvin_2805 PF00672 HAMP domain Alvin_2805 PF17202 Single cache domain 3 Alvin_2805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_2806 PF00425 chorismate binding enzyme Alvin_2806 PF04715 Anthranilate synthase component I, N terminal region Alvin_2815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Alvin_2815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Alvin_2815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Alvin_2815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Alvin_2817 PF01734 Patatin-like phospholipase Alvin_2818 PF07690 Major Facilitator Superfamily Alvin_2819 PF18030 RimK PreATP-grasp domain Alvin_2819 PF08443 RimK-like ATP-grasp domain Alvin_2820 PF04055 Radical SAM superfamily Alvin_2820 PF08497 Radical SAM N-terminal Alvin_2820 PF11842 Domain of unknown function (DUF3362) Alvin_2821 PF01618 MotA/TolQ/ExbB proton channel family Alvin_2822 PF13677 Membrane MotB of proton-channel complex MotA/MotB Alvin_2822 PF00691 OmpA family Alvin_2824 PF00873 AcrB/AcrD/AcrF family Alvin_2825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alvin_2825 PF00529 HlyD membrane-fusion protein of T1SS Alvin_2827 PF12729 Four helix bundle sensory module for signal transduction Alvin_2827 PF00672 HAMP domain Alvin_2827 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_2829 PF01189 16S rRNA methyltransferase RsmB/F Alvin_2829 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Alvin_2829 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF Alvin_2830 PF18030 RimK PreATP-grasp domain Alvin_2830 PF02080 TrkA-C domain Alvin_2830 PF08443 RimK-like ATP-grasp domain Alvin_2832 PF01546 Peptidase family M20/M25/M40 Alvin_2832 PF07687 Peptidase dimerisation domain Alvin_2833 PF00155 Aminotransferase class I and II Alvin_2834 PF00815 Histidinol dehydrogenase Alvin_2835 PF01634 ATP phosphoribosyltransferase Alvin_2836 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Alvin_2839 PF02470 MlaD protein Alvin_2840 PF02405 Permease MlaE Alvin_2841 PF00005 ABC transporter Alvin_2842 PF00571 CBS domain Alvin_2842 PF01380 SIS domain Alvin_2846 PF00005 ABC transporter Alvin_2846 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alvin_2847 PF04552 Sigma-54, DNA binding domain Alvin_2847 PF00309 Sigma-54 factor, Activator interacting domain (AID) Alvin_2847 PF04963 Sigma-54 factor, core binding domain Alvin_2848 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Alvin_2849 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Alvin_2850 PF02603 HPr Serine kinase N terminus Alvin_2850 PF07475 HPr Serine kinase C-terminal domain Alvin_2851 PF03668 P-loop ATPase protein family Alvin_2853 PF00381 PTS HPr component phosphorylation site Alvin_2854 PF05524 PEP-utilising enzyme, N-terminal Alvin_2854 PF00391 PEP-utilising enzyme, mobile domain Alvin_2854 PF02896 PEP-utilising enzyme, TIM barrel domain Alvin_2855 PF03448 MgtE intracellular N domain Alvin_2855 PF00571 CBS domain Alvin_2855 PF01769 Divalent cation transporter Alvin_2856 PF01425 Amidase Alvin_2857 PF02686 Glu-tRNAGln amidotransferase C subunit Alvin_2859 PF04085 rod shape-determining protein MreC Alvin_2860 PF04093 rod shape-determining protein MreD Alvin_2861 PF03717 Penicillin-binding Protein dimerisation domain Alvin_2861 PF00905 Penicillin binding protein transpeptidase domain Alvin_2862 PF01098 Cell cycle protein Alvin_2863 PF05036 Sporulation related domain Alvin_2863 PF03330 Lytic transglycolase Alvin_2864 PF00768 D-alanyl-D-alanine carboxypeptidase Alvin_2864 PF07943 Penicillin-binding protein 5, C-terminal domain Alvin_2865 PF01063 Amino-transferase class IV Alvin_2867 PF03099 Biotin/lipoate A/B protein ligase family Alvin_2871 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2871 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2871 PF00672 HAMP domain Alvin_2871 PF00072 Response regulator receiver domain Alvin_2871 PF01627 Hpt domain Alvin_2871 PF17149 Periplasmic sensor domain found in signal transduction proteins Alvin_2873 PF05685 Putative restriction endonuclease Alvin_2874 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2874 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2874 PF01627 Hpt domain Alvin_2874 PF00672 HAMP domain Alvin_2874 PF00072 Response regulator receiver domain Alvin_2874 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_2875 PF00072 Response regulator receiver domain Alvin_2877 PF02630 SCO1/SenC Alvin_2878 PF04314 Copper chaperone PCu(A)C Alvin_2879 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alvin_2881 PF00990 Diguanylate cyclase, GGDEF domain Alvin_2881 PF03707 Bacterial signalling protein N terminal repeat Alvin_2881 PF00563 EAL domain Alvin_2882 PF01339 CheB methylesterase Alvin_2882 PF08448 PAS fold Alvin_2882 PF01739 CheR methyltransferase, SAM binding domain Alvin_2882 PF03705 CheR methyltransferase, all-alpha domain Alvin_2884 PF00037 4Fe-4S binding domain Alvin_2885 PF01467 Cytidylyltransferase-like Alvin_2887 PF05193 Peptidase M16 inactive domain Alvin_2888 PF00675 Insulinase (Peptidase family M16) Alvin_2888 PF05193 Peptidase M16 inactive domain Alvin_2889 PF00448 SRP54-type protein, GTPase domain Alvin_2889 PF02881 SRP54-type protein, helical bundle domain Alvin_2890 PF00005 ABC transporter Alvin_2891 PF18075 FtsX extracellular domain Alvin_2893 PF02594 Uncharacterised ACR, YggU family COG1872 Alvin_2894 PF02325 YGGT family Alvin_2895 PF03807 NADP oxidoreductase coenzyme F420-dependent Alvin_2895 PF14748 Pyrroline-5-carboxylate reductase dimerisation Alvin_2896 PF01168 Alanine racemase, N-terminal domain Alvin_2897 PF01725 Ham1 family Alvin_2898 PF01138 3' exoribonuclease family, domain 1 Alvin_2898 PF03725 3' exoribonuclease family, domain 2 Alvin_2899 PF00267 Gram-negative porin Alvin_2900 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Alvin_2901 PF01812 5-formyltetrahydrofolate cyclo-ligase family Alvin_2902 PF05164 Cell division protein ZapA Alvin_2904 PF03695 Uncharacterised protein family (UPF0149) Alvin_2905 PF05195 Aminopeptidase P, N-terminal domain Alvin_2905 PF00557 Metallopeptidase family M24 Alvin_2906 PF01494 FAD binding domain Alvin_2907 PF01494 FAD binding domain Alvin_2908 PF00365 Phosphofructokinase Alvin_2909 PF00719 Inorganic pyrophosphatase Alvin_2910 PF01967 MoaC family Alvin_2911 PF01926 50S ribosome-binding GTPase Alvin_2912 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alvin_2912 PF01627 Hpt domain Alvin_2912 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2912 PF00672 HAMP domain Alvin_2912 PF00072 Response regulator receiver domain Alvin_2912 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2915 PF01584 CheW-like domain Alvin_2916 PF13677 Membrane MotB of proton-channel complex MotA/MotB Alvin_2916 PF00691 OmpA family Alvin_2917 PF01618 MotA/TolQ/ExbB proton channel family Alvin_2918 PF01339 CheB methylesterase Alvin_2918 PF00072 Response regulator receiver domain Alvin_2919 PF07194 P2 response regulator binding domain Alvin_2919 PF01627 Hpt domain Alvin_2919 PF02895 Signal transducing histidine kinase, homodimeric domain Alvin_2919 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2919 PF01584 CheW-like domain Alvin_2920 PF04344 Chemotaxis phosphatase, CheZ Alvin_2921 PF00072 Response regulator receiver domain Alvin_2922 PF04545 Sigma-70, region 4 Alvin_2922 PF04539 Sigma-70 region 3 Alvin_2922 PF04542 Sigma-70 region 2 Alvin_2923 PF10609 NUBPL iron-transfer P-loop NTPase Alvin_2924 PF00448 SRP54-type protein, GTPase domain Alvin_2925 PF00771 FHIPEP family Alvin_2926 PF01312 FlhB HrpN YscU SpaS Family Alvin_2927 PF01311 Bacterial export proteins, family 1 Alvin_2928 PF01313 Bacterial export proteins, family 3 Alvin_2932 PF00813 FliP family Alvin_2933 PF04347 Flagellar biosynthesis protein, FliO Alvin_2934 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Alvin_2935 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Alvin_2935 PF02154 Flagellar motor switch protein FliM Alvin_2939 PF18269 T3SS EscN ATPase C-terminal domain Alvin_2939 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alvin_2941 PF14842 FliG N-terminal domain Alvin_2941 PF14841 FliG middle domain Alvin_2941 PF01706 FliG C-terminal domain Alvin_2942 PF08345 Flagellar M-ring protein C-terminal Alvin_2942 PF01514 Secretory protein of YscJ/FliF family Alvin_2943 PF02049 Flagellar hook-basal body complex protein FliE Alvin_2944 PF02954 Bacterial regulatory protein, Fis family Alvin_2944 PF00072 Response regulator receiver domain Alvin_2944 PF00158 Sigma-54 interaction domain Alvin_2947 PF01618 MotA/TolQ/ExbB proton channel family Alvin_2948 PF13677 Membrane MotB of proton-channel complex MotA/MotB Alvin_2948 PF00691 OmpA family Alvin_2958 PF13087 AAA domain Alvin_2958 PF13195 Protein of unknown function (DUF4011) Alvin_2958 PF13086 AAA domain Alvin_2958 PF13087 AAA domain Alvin_2958 PF13195 Protein of unknown function (DUF4011) Alvin_2958 PF13086 AAA domain Alvin_2959 PF08502 LeuA allosteric (dimerisation) domain Alvin_2959 PF00682 HMGL-like Alvin_2960 PF00291 Pyridoxal-phosphate dependent enzyme Alvin_2960 PF14821 Threonine synthase N terminus Alvin_2962 PF00474 Sodium:solute symporter family Alvin_2964 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Alvin_2964 PF01348 Type II intron maturase Alvin_2966 PF00990 Diguanylate cyclase, GGDEF domain Alvin_2967 PF03144 Elongation factor Tu domain 2 Alvin_2967 PF00009 Elongation factor Tu GTP binding domain Alvin_2967 PF03764 Elongation factor G, domain IV Alvin_2967 PF14492 Elongation Factor G, domain II Alvin_2967 PF00679 Elongation factor G C-terminus Alvin_2968 PF17969 L,D-transpeptidase C-terminal domain Alvin_2968 PF01476 LysM domain Alvin_2968 PF03734 L,D-transpeptidase catalytic domain Alvin_2971 PF01061 ABC-2 type transporter Alvin_2972 PF00005 ABC transporter Alvin_2973 PF00571 CBS domain Alvin_2973 PF00478 IMP dehydrogenase / GMP reductase domain Alvin_2974 PF03109 ABC1 family Alvin_2976 PF01209 ubiE/COQ5 methyltransferase family Alvin_2978 PF00004 ATPase family associated with various cellular activities (AAA) Alvin_2978 PF10431 C-terminal, D2-small domain, of ClpB protein Alvin_2978 PF07724 AAA domain (Cdc48 subfamily) Alvin_2979 PF00227 Proteasome subunit Alvin_2981 PF13291 ACT domain Alvin_2981 PF02824 TGS domain Alvin_2981 PF04607 Region found in RelA / SpoT proteins Alvin_2982 PF01192 RNA polymerase Rpb6 Alvin_2983 PF00625 Guanylate kinase Alvin_2984 PF03755 YicC-like family, N-terminal region Alvin_2984 PF08340 Domain of unknown function (DUF1732) Alvin_2985 PF00069 Protein kinase domain Alvin_2986 PF00311 Phosphoenolpyruvate carboxylase Alvin_2988 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alvin_2988 PF03466 LysR substrate binding domain Alvin_2989 PF02525 Flavodoxin-like fold Alvin_2990 PF02678 Pirin Alvin_2990 PF05726 Pirin C-terminal cupin domain Alvin_2991 PF04002 RadC-like JAB domain Alvin_2992 PF04127 DNA / pantothenate metabolism flavoprotein Alvin_2992 PF02441 Flavoprotein Alvin_2993 PF00692 dUTPase Alvin_2994 PF00672 HAMP domain Alvin_2994 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_2995 PF00696 Amino acid kinase family Alvin_2997 PF00072 Response regulator receiver domain Alvin_2997 PF02954 Bacterial regulatory protein, Fis family Alvin_2997 PF00158 Sigma-54 interaction domain Alvin_2998 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_2998 PF00512 His Kinase A (phospho-acceptor) domain Alvin_2998 PF00989 PAS fold Alvin_3000 PF03951 Glutamine synthetase, beta-Grasp domain Alvin_3000 PF00120 Glutamine synthetase, catalytic domain Alvin_3001 PF01545 Cation efflux family Alvin_3001 PF16916 Dimerisation domain of Zinc Transporter Alvin_3002 PF02091 Glycyl-tRNA synthetase alpha subunit Alvin_3003 PF02092 Glycyl-tRNA synthetase beta subunit Alvin_3003 PF05746 DALR anticodon binding domain Alvin_3006 PF00263 Bacterial type II and III secretion system protein Alvin_3006 PF03958 Bacterial type II/III secretion system short domain Alvin_3010 PF03934 Type II secretion system (T2SS), protein K Alvin_3011 PF07963 Prokaryotic N-terminal methylation motif Alvin_3011 PF11612 Type II secretion system (T2SS), protein J Alvin_3012 PF07963 Prokaryotic N-terminal methylation motif Alvin_3014 PF08334 Type II secretion system (T2SS), protein G Alvin_3014 PF07963 Prokaryotic N-terminal methylation motif Alvin_3015 PF00482 Type II secretion system (T2SS), protein F Alvin_3016 PF00114 Pilin (bacterial filament) Alvin_3016 PF07963 Prokaryotic N-terminal methylation motif Alvin_3020 PF05567 Neisseria PilC beta-propeller domain Alvin_3021 PF00114 Pilin (bacterial filament) Alvin_3021 PF07963 Prokaryotic N-terminal methylation motif Alvin_3022 PF00437 Type II/IV secretion system protein Alvin_3022 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Alvin_3023 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Alvin_3023 PF00953 Glycosyl transferase family 4 Alvin_3024 PF01965 DJ-1/PfpI family Alvin_3025 PF03572 Peptidase family S41 Alvin_3025 PF13180 PDZ domain Alvin_3026 PF01551 Peptidase family M23 Alvin_3029 PF02556 Preprotein translocase subunit SecB Alvin_3030 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Alvin_3030 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Alvin_3031 PF00588 SpoU rRNA Methylase family Alvin_3036 PF13580 SIS domain Alvin_3039 PF02579 Dinitrogenase iron-molybdenum cofactor Alvin_3039 PF04055 Radical SAM superfamily Alvin_3040 PF12838 4Fe-4S dicluster domain Alvin_3041 PF00111 2Fe-2S iron-sulfur cluster binding domain Alvin_3042 PF00111 2Fe-2S iron-sulfur cluster binding domain Alvin_3043 PF04891 NifQ Alvin_3044 PF03747 ADP-ribosylglycohydrolase Alvin_3046 PF03880 DbpA RNA binding domain Alvin_3046 PF00270 DEAD/DEAH box helicase Alvin_3046 PF12343 Cold shock protein DEAD box A Alvin_3046 PF00271 Helicase conserved C-terminal domain Alvin_3047 PF13361 UvrD-like helicase C-terminal domain Alvin_3047 PF00580 UvrD/REP helicase N-terminal domain Alvin_3048 PF00575 S1 RNA binding domain Alvin_3049 PF06969 HemN C-terminal domain Alvin_3049 PF04055 Radical SAM superfamily Alvin_3050 PF01197 Ribosomal protein L31 Alvin_3051 PF00390 Malic enzyme, N-terminal domain Alvin_3051 PF03949 Malic enzyme, NAD binding domain Alvin_3052 PF00285 Citrate synthase, C-terminal domain Alvin_3058 PF03958 Bacterial type II/III secretion system short domain Alvin_3058 PF00263 Bacterial type II and III secretion system protein Alvin_3058 PF07660 Secretin and TonB N terminus short domain Alvin_3058 PF11741 AMIN domain Alvin_3059 PF01202 Shikimate kinase Alvin_3060 PF01761 3-dehydroquinate synthase Alvin_3063 PF13439 Glycosyltransferase Family 4 Alvin_3063 PF00534 Glycosyl transferases group 1 Alvin_3064 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alvin_3064 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alvin_3065 PF01488 Shikimate / quinate 5-dehydrogenase Alvin_3065 PF08501 Shikimate dehydrogenase substrate binding domain Alvin_3065 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Alvin_3066 PF00990 Diguanylate cyclase, GGDEF domain Alvin_3066 PF00563 EAL domain Alvin_3066 PF03707 Bacterial signalling protein N terminal repeat Alvin_3067 PF13193 AMP-binding enzyme C-terminal domain Alvin_3067 PF00501 AMP-binding enzyme Alvin_3068 PF00490 Delta-aminolevulinic acid dehydratase Alvin_3069 PF00085 Thioredoxin Alvin_3071 PF13545 Crp-like helix-turn-helix domain Alvin_3071 PF00027 Cyclic nucleotide-binding domain Alvin_3075 PF13932 GidA associated domain Alvin_3075 PF01134 Glucose inhibited division protein A Alvin_3076 PF07726 ATPase family associated with various cellular activities (AAA) Alvin_3076 PF17863 AAA lid domain Alvin_3077 PF06827 Zinc finger found in FPG and IleRS Alvin_3077 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Alvin_3077 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Alvin_3081 PF00005 ABC transporter Alvin_3083 PF13559 Domain of unknown function (DUF4129) Alvin_3083 PF01841 Transglutaminase-like superfamily Alvin_3083 PF11992 Domain of unknown function (DUF3488) Alvin_3084 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alvin_3084 PF00512 His Kinase A (phospho-acceptor) domain Alvin_3085 PF01171 PP-loop family Alvin_3087 PF08240 Alcohol dehydrogenase GroES-like domain Alvin_3087 PF00107 Zinc-binding dehydrogenase Alvin_3088 PF01208 Uroporphyrinogen decarboxylase (URO-D) Alvin_3089 PF01292 Prokaryotic cytochrome b561 Alvin_3090 PF17946 RecC C-terminal domain Alvin_3091 PF11455 Protein of unknown function (DUF3018) Alvin_3098 PF12705 PD-(D/E)XK nuclease superfamily Alvin_3098 PF00580 UvrD/REP helicase N-terminal domain Alvin_3098 PF13361 UvrD-like helicase C-terminal domain Alvin_3099 PF13538 UvrD-like helicase C-terminal domain Alvin_3100 PF02719 Polysaccharide biosynthesis protein Alvin_3101 PF00361 Proton-conducting membrane transporter Alvin_3101 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Alvin_3101 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Alvin_3101 PF13244 Domain of unknown function (DUF4040) Alvin_3102 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Alvin_3103 PF00361 Proton-conducting membrane transporter Alvin_3104 PF01899 Na+/H+ ion antiporter subunit Alvin_3105 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Alvin_3106 PF03334 Na+/H+ antiporter subunit Alvin_3107 PF02391 MoaE protein Alvin_3108 PF00909 Ammonium Transporter Family Alvin_3108 PF00672 HAMP domain Alvin_3113 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Alvin_3113 PF18074 Primosomal protein N C-terminal domain Alvin_3113 PF17764 3′ DNA-binding domain (3′BD) Alvin_3113 PF00271 Helicase conserved C-terminal domain Alvin_3113 PF00270 DEAD/DEAH box helicase Alvin_3114 PF00750 tRNA synthetases class I (R) Alvin_3114 PF05746 DALR anticodon binding domain Alvin_3114 PF03485 Arginyl tRNA synthetase N terminal domain Alvin_3116 PF13520 Amino acid permease Alvin_3118 PF07670 Nucleoside recognition Alvin_3118 PF02421 Ferrous iron transport protein B Alvin_3118 PF07664 Ferrous iron transport protein B C terminus Alvin_3120 PF00437 Type II/IV secretion system protein Alvin_3122 PF10396 GTP-binding protein TrmE N-terminus Alvin_3122 PF12631 MnmE helical domain Alvin_3122 PF01926 50S ribosome-binding GTPase Alvin_3123 PF02096 60Kd inner membrane protein Alvin_3123 PF14849 YidC periplasmic domain Alvin_3124 PF01809 Putative membrane protein insertion efficiency factor Alvin_3125 PF00825 Ribonuclease P Alvin_3126 PF00468 Ribosomal protein L34 Alvin_3135 PF04055 Radical SAM superfamily Alvin_3135 PF06463 Molybdenum Cofactor Synthesis C Alvin_3144 PF09827 CRISPR associated protein Cas2 Alvin_3145 PF09827 CRISPR associated protein Cas2 Alvin_3146 PF01867 CRISPR associated protein Cas1 Alvin_3147 PF00816 H-NS histone family Alvin_3152 PF07042 TrfA protein Alvin_3154 PF08241 Methyltransferase domain Alvin_3164 PF01139 tRNA-splicing ligase RtcB Alvin_3170 PF04073 Aminoacyl-tRNA editing domain Alvin_3175 PF08463 EcoEI R protein C-terminal Alvin_3175 PF00271 Helicase conserved C-terminal domain Alvin_3175 PF04851 Type III restriction enzyme, res subunit Alvin_3175 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Alvin_3176 PF02384 N-6 DNA Methylase Alvin_3177 PF01420 Type I restriction modification DNA specificity domain Alvin_3179 PF00270 DEAD/DEAH box helicase Alvin_3179 PF00271 Helicase conserved C-terminal domain Alvin_3179 PF00570 HRDC domain Alvin_3179 PF09382 RQC domain Alvin_3179 PF16124 RecQ zinc-binding Alvin_3186 PF00589 Phage integrase family Alvin_3186 PF02899 Phage integrase, N-terminal SAM-like domain Alvin_3188 PF10609 NUBPL iron-transfer P-loop NTPase Alvin_3188 PF01883 Iron-sulfur cluster assembly protein Alvin_3208 PF00436 Single-strand binding protein family Alvin_3231 PF11740 Plasmid replication region DNA-binding N-term Alvin_3236 PF01980 tRNA-methyltransferase O Alvin_3236 PF18389 TrmO C-terminal domain Alvin_3238 PF01544 CorA-like Mg2+ transporter protein Alvin_3240 PF13538 UvrD-like helicase C-terminal domain Alvin_3240 PF14490 Helix-hairpin-helix containing domain Alvin_3240 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Alvin_3243 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alvin_3246 PF18255 DNA processing protein A sterile alpha motif domain Alvin_3246 PF02481 DNA recombination-mediator protein A Alvin_3254 PF13614 AAA domain Alvin_3259 PF02384 N-6 DNA Methylase Alvin_3265 PF01850 PIN domain Alvin_3267 PF00216 Bacterial DNA-binding protein Alvin_3276 PF09588 YqaJ-like viral recombinase domain Alvin_3277 PF07728 AAA domain (dynein-related subfamily) Alvin_3281 PF04002 RadC-like JAB domain Alvin_3293 PF00239 Resolvase, N terminal domain Alvin_3293 PF02796 Helix-turn-helix domain of resolvase Alvin_3302 PF01051 Initiator Replication protein