locus-tag class description E3E15_00005 PF11638 DnaA N-terminal domain E3E15_00005 PF08299 Bacterial dnaA protein helix-turn-helix E3E15_00005 PF00308 Bacterial dnaA protein E3E15_00010 PF02767 DNA polymerase III beta subunit, central domain E3E15_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain E3E15_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain E3E15_00035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3E15_00035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3E15_00040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3E15_00040 PF02142 MGS-like domain E3E15_00040 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain E3E15_00045 PF00117 Glutamine amidotransferase class-I E3E15_00045 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain E3E15_00050 PF00657 GDSL-like Lipase/Acylhydrolase E3E15_00050 PF06767 Sif protein E3E15_00055 PF00773 RNB domain E3E15_00060 PF02230 Phospholipase/Carboxylesterase E3E15_00065 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain E3E15_00065 PF03900 Porphobilinogen deaminase, C-terminal domain E3E15_00070 PF02537 CrcB-like protein, Camphor Resistance (CrcB) E3E15_00090 PF00005 ABC transporter E3E15_00105 PF00132 Bacterial transferase hexapeptide (six repeats) E3E15_00110 PF03550 Outer membrane lipoprotein LolB E3E15_00115 PF00288 GHMP kinases N terminal domain E3E15_00130 PF02325 YGGT family E3E15_00135 PF02594 Uncharacterised ACR, YggU family COG1872 E3E15_00145 PF08443 RimK-like ATP-grasp domain E3E15_00145 PF18030 RimK PreATP-grasp domain E3E15_00150 PF03772 Competence protein E3E15_00150 PF00753 Metallo-beta-lactamase superfamily E3E15_00165 PF00654 Voltage gated chloride channel E3E15_00185 PF13520 Amino acid permease E3E15_00240 PF00872 Transposase, Mutator family E3E15_00255 PF00872 Transposase, Mutator family E3E15_00265 PF03222 Tryptophan/tyrosine permease family E3E15_00270 PF01926 50S ribosome-binding GTPase E3E15_00270 PF01018 GTP1/OBG E3E15_00275 PF13520 Amino acid permease E3E15_00280 PF00005 ABC transporter E3E15_00280 PF06472 ABC transporter transmembrane region 2 E3E15_00290 PF01336 OB-fold nucleic acid binding domain E3E15_00290 PF00152 tRNA synthetases class II (D, K and N) E3E15_00290 PF02938 GAD domain E3E15_00295 PF00391 PEP-utilising enzyme, mobile domain E3E15_00295 PF02896 PEP-utilising enzyme, TIM barrel domain E3E15_00295 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain E3E15_00300 PF17910 FeoB cytosolic helical domain E3E15_00300 PF07664 Ferrous iron transport protein B C terminus E3E15_00300 PF02421 Ferrous iron transport protein B E3E15_00300 PF07670 Nucleoside recognition E3E15_00305 PF00929 Exonuclease E3E15_00310 PF01132 Elongation factor P (EF-P) OB domain E3E15_00310 PF09285 Elongation factor P, C-terminal E3E15_00310 PF08207 Elongation factor P (EF-P) KOW-like domain E3E15_00315 PF00114 Pilin (bacterial filament) E3E15_00315 PF07963 Prokaryotic N-terminal methylation motif E3E15_00320 PF03279 Bacterial lipid A biosynthesis acyltransferase E3E15_00325 PF03279 Bacterial lipid A biosynthesis acyltransferase E3E15_00330 PF02096 60Kd inner membrane protein E3E15_00330 PF14849 YidC periplasmic domain E3E15_00335 PF01809 Putative membrane protein insertion efficiency factor E3E15_00340 PF00825 Ribonuclease P E3E15_00345 PF00468 Ribosomal protein L34 E3E15_00350 PF03222 Tryptophan/tyrosine permease family E3E15_00355 PF02527 rRNA small subunit methyltransferase G E3E15_00360 PF01168 Alanine racemase, N-terminal domain E3E15_00365 PF07690 Major Facilitator Superfamily E3E15_00370 PF13580 SIS domain E3E15_00375 PF04355 SmpA / OmlA family E3E15_00380 PF01649 Ribosomal protein S20 E3E15_00390 PF00291 Pyridoxal-phosphate dependent enzyme E3E15_00395 PF00290 Tryptophan synthase alpha chain E3E15_00405 PF00004 ATPase family associated with various cellular activities (AAA) E3E15_00405 PF02861 Clp amino terminal domain, pathogenicity island component E3E15_00405 PF17871 AAA lid domain E3E15_00405 PF07724 AAA domain (Cdc48 subfamily) E3E15_00405 PF10431 C-terminal, D2-small domain, of ClpB protein E3E15_00435 PF01553 Acyltransferase E3E15_00445 PF01300 Telomere recombination E3E15_00450 PF00575 S1 RNA binding domain E3E15_00455 PF14437 MafB19-like deaminase E3E15_00460 PF07478 D-ala D-ala ligase C-terminus E3E15_00470 PF02491 SHS2 domain inserted in FTSA E3E15_00475 PF00091 Tubulin/FtsZ family, GTPase domain E3E15_00475 PF12327 FtsZ family, C-terminal domain E3E15_00480 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase E3E15_00485 PF12170 DNA polymerase III tau subunit V interacting with alpha E3E15_00485 PF12169 DNA polymerase III subunits gamma and tau domain III E3E15_00495 PF03600 Citrate transporter E3E15_00500 PF07690 Major Facilitator Superfamily E3E15_00510 PF00872 Transposase, Mutator family E3E15_00535 PF02321 Outer membrane efflux protein E3E15_00545 PF00156 Phosphoribosyl transferase domain E3E15_00550 PF02769 AIR synthase related protein, C-terminal domain E3E15_00550 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain E3E15_00550 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal E3E15_00565 PF10397 Adenylosuccinate lyase C-terminus E3E15_00565 PF00206 Lyase E3E15_00580 PF02686 Glu-tRNAGln amidotransferase C subunit E3E15_00585 PF01425 Amidase E3E15_00590 PF02934 GatB/GatE catalytic domain E3E15_00590 PF02637 GatB domain E3E15_00600 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3E15_00600 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3E15_00610 PF00872 Transposase, Mutator family E3E15_00620 PF07690 Major Facilitator Superfamily E3E15_00630 PF04183 IucA / IucC family E3E15_00630 PF06276 Ferric iron reductase FhuF-like transporter E3E15_00635 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) E3E15_00640 PF06276 Ferric iron reductase FhuF-like transporter E3E15_00640 PF04183 IucA / IucC family E3E15_00645 PF00282 Pyridoxal-dependent decarboxylase conserved domain E3E15_00650 PF00202 Aminotransferase class-III E3E15_00655 PF01842 ACT domain E3E15_00655 PF00696 Amino acid kinase family E3E15_00660 PF01475 Ferric uptake regulator family E3E15_00680 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 E3E15_00685 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3E15_00690 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit E3E15_00695 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit E3E15_00705 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E3E15_00705 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region E3E15_00705 PF10531 SLBB domain E3E15_00710 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal E3E15_00710 PF00384 Molybdopterin oxidoreductase E3E15_00710 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region E3E15_00715 PF00146 NADH dehydrogenase E3E15_00720 PF12838 4Fe-4S dicluster domain E3E15_00725 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 E3E15_00730 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L E3E15_00735 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus E3E15_00735 PF00361 Proton-conducting membrane transporter E3E15_00740 PF00361 Proton-conducting membrane transporter E3E15_00740 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus E3E15_00745 PF00361 Proton-conducting membrane transporter E3E15_00755 PF04380 Membrane fusogenic activity E3E15_00760 PF13335 Magnesium chelatase, subunit ChlI C-terminal E3E15_00760 PF01078 Magnesium chelatase, subunit ChlI E3E15_00765 PF01208 Uroporphyrinogen decarboxylase (URO-D) E3E15_00775 PF02576 RimP N-terminal domain E3E15_00775 PF17384 RimP C-terminal SH3 domain E3E15_00780 PF13184 NusA-like KH domain E3E15_00780 PF08529 NusA N-terminal domain E3E15_00785 PF04760 Translation initiation factor IF-2, N-terminal region E3E15_00785 PF11987 Translation-initiation factor 2 E3E15_00785 PF00009 Elongation factor Tu GTP binding domain E3E15_00790 PF02033 Ribosome-binding factor A E3E15_00795 PF13393 Histidyl-tRNA synthetase E3E15_00795 PF03129 Anticodon binding domain E3E15_00805 PF03969 AFG1-like ATPase E3E15_00810 PF00849 RNA pseudouridylate synthase E3E15_00810 PF01479 S4 domain E3E15_00825 PF00119 ATP synthase A chain E3E15_00830 PF00137 ATP synthase subunit C E3E15_00835 PF00430 ATP synthase B/B' CF(0) E3E15_00840 PF00213 ATP synthase delta (OSCP) subunit E3E15_00845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3E15_00845 PF00306 ATP synthase alpha/beta chain, C terminal domain E3E15_00845 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3E15_00850 PF00231 ATP synthase E3E15_00855 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3E15_00855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3E15_00860 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain E3E15_00870 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3E15_00875 PF00872 Transposase, Mutator family E3E15_00910 PF08212 Lipocalin-like domain E3E15_00920 PF04960 Glutaminase E3E15_00925 PF00120 Glutamine synthetase, catalytic domain E3E15_00925 PF03951 Glutamine synthetase, beta-Grasp domain E3E15_00935 PF02470 MlaD protein E3E15_00940 PF02405 Permease MlaE E3E15_00945 PF00005 ABC transporter E3E15_00950 PF03776 Septum formation topological specificity factor MinE E3E15_00955 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E3E15_00960 PF03775 Septum formation inhibitor MinC, C-terminal domain E3E15_00960 PF05209 Septum formation inhibitor MinC, N-terminal domain E3E15_00965 PF00471 Ribosomal protein L33 E3E15_00970 PF00830 Ribosomal L28 family E3E15_00980 PF00271 Helicase conserved C-terminal domain E3E15_00980 PF17191 RecG wedge domain E3E15_00980 PF00270 DEAD/DEAH box helicase E3E15_01000 PF05683 Fumarase C-terminus E3E15_01005 PF00293 NUDIX domain E3E15_01020 PF00860 Permease family E3E15_01025 PF04055 Radical SAM superfamily E3E15_01025 PF06969 HemN C-terminal domain E3E15_01040 PF07690 Major Facilitator Superfamily E3E15_01045 PF00694 Aconitase C-terminal domain E3E15_01045 PF00330 Aconitase family (aconitate hydratase) E3E15_01055 PF00437 Type II/IV secretion system protein E3E15_01060 PF02322 Cytochrome bd terminal oxidase subunit II E3E15_01065 PF01654 Cytochrome bd terminal oxidase subunit I E3E15_01070 PF01370 NAD dependent epimerase/dehydratase family E3E15_01070 PF08338 Domain of unknown function (DUF1731) E3E15_01075 PF08521 Two-component sensor kinase N-terminal E3E15_01075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3E15_01075 PF00512 His Kinase A (phospho-acceptor) domain E3E15_01095 PF00872 Transposase, Mutator family E3E15_01125 PF00166 Chaperonin 10 Kd subunit E3E15_01130 PF00118 TCP-1/cpn60 chaperonin family E3E15_01140 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3E15_01150 PF00106 short chain dehydrogenase E3E15_01165 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E3E15_01165 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E3E15_01170 PF13520 Amino acid permease E3E15_01175 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E3E15_01175 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E3E15_01190 PF00226 DnaJ domain E3E15_01190 PF01556 DnaJ C terminal domain E3E15_01195 PF03222 Tryptophan/tyrosine permease family E3E15_01210 PF13291 ACT domain E3E15_01210 PF04607 Region found in RelA / SpoT proteins E3E15_01210 PF02824 TGS domain E3E15_01225 PF04445 Putative SAM-dependent methyltransferase E3E15_01230 PF00589 Phage integrase family E3E15_01230 PF02899 Phage integrase, N-terminal SAM-like domain E3E15_01235 PF03222 Tryptophan/tyrosine permease family E3E15_01240 PF02556 Preprotein translocase subunit SecB E3E15_01250 PF05188 MutS domain II E3E15_01250 PF00488 MutS domain V E3E15_01250 PF05190 MutS family domain IV E3E15_01250 PF01624 MutS domain I E3E15_01250 PF05192 MutS domain III E3E15_01255 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit E3E15_01275 PF13580 SIS domain E3E15_01290 PF00999 Sodium/hydrogen exchanger family E3E15_01300 PF00579 tRNA synthetases class I (W and Y) E3E15_01315 PF01121 Dephospho-CoA kinase E3E15_01325 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3E15_01325 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3E15_01325 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3E15_01325 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3E15_01340 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system E3E15_01345 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system E3E15_01365 PF17831 Pyruvate dehydrogenase E1 component middle domain E3E15_01365 PF00456 Transketolase, thiamine diphosphate binding domain E3E15_01370 PF00364 Biotin-requiring enzyme E3E15_01370 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3E15_01370 PF02817 e3 binding domain E3E15_01375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3E15_01375 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3E15_01390 PF07836 DmpG-like communication domain E3E15_01390 PF00682 HMGL-like E3E15_01400 PF00180 Isocitrate/isopropylmalate dehydrogenase E3E15_01400 PF03737 Aldolase/RraA E3E15_01415 PF07690 Major Facilitator Superfamily E3E15_01425 PF03167 Uracil DNA glycosylase superfamily E3E15_01430 PF00521 DNA gyrase/topoisomerase IV, subunit A E3E15_01430 PF03989 DNA gyrase C-terminal domain, beta-propeller E3E15_01435 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase E3E15_01435 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain E3E15_01435 PF13288 DXP reductoisomerase C-terminal domain E3E15_01440 PF01103 Surface antigen E3E15_01440 PF07244 Surface antigen variable number repeat E3E15_01450 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD E3E15_01450 PF00132 Bacterial transferase hexapeptide (six repeats) E3E15_01455 PF07977 FabA-like domain E3E15_01460 PF00132 Bacterial transferase hexapeptide (six repeats) E3E15_01460 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 E3E15_01465 PF02684 Lipid-A-disaccharide synthetase E3E15_01485 PF03976 Polyphosphate kinase 2 (PPK2) E3E15_01490 PF01066 CDP-alcohol phosphatidyltransferase E3E15_01495 PF00348 Polyprenyl synthetase E3E15_01500 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) E3E15_01500 PF00534 Glycosyl transferases group 1 E3E15_01505 PF01725 Ham1 family E3E15_01510 PF03807 NADP oxidoreductase coenzyme F420-dependent E3E15_01510 PF14748 Pyrroline-5-carboxylate reductase dimerisation E3E15_01515 PF00486 Transcriptional regulatory protein, C terminal E3E15_01515 PF00072 Response regulator receiver domain E3E15_01520 PF10502 Signal peptidase, peptidase S26 E3E15_01525 PF14622 Ribonuclease-III-like E3E15_01525 PF00035 Double-stranded RNA binding motif E3E15_01530 PF16198 tRNA pseudouridylate synthase B C-terminal domain E3E15_01530 PF01509 TruB family pseudouridylate synthase (N terminal domain) E3E15_01535 PF08461 Ribonuclease R winged-helix domain E3E15_01535 PF17876 Cold shock domain E3E15_01535 PF08206 Ribonuclease B OB domain E3E15_01535 PF00575 S1 RNA binding domain E3E15_01535 PF00773 RNB domain E3E15_01545 PF00106 short chain dehydrogenase E3E15_01575 PF00672 HAMP domain E3E15_01575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3E15_01575 PF00989 PAS fold E3E15_01575 PF00512 His Kinase A (phospho-acceptor) domain E3E15_01575 PF18698 Histidine kinase sensor domain E3E15_01580 PF00486 Transcriptional regulatory protein, C terminal E3E15_01580 PF00072 Response regulator receiver domain E3E15_01590 PF00491 Arginase family E3E15_01595 PF18127 Domain of unknown function (DUF5598) E3E15_01595 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family E3E15_01615 PF07497 Rho termination factor, RNA-binding domain E3E15_01615 PF07498 Rho termination factor, N-terminal domain E3E15_01615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3E15_01620 PF00085 Thioredoxin E3E15_01625 PF02541 Ppx/GppA phosphatase family E3E15_01630 PF12002 MgsA AAA+ ATPase C terminal E3E15_01630 PF00004 ATPase family associated with various cellular activities (AAA) E3E15_01630 PF16193 AAA C-terminal domain E3E15_01635 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E3E15_01635 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E3E15_01645 PF02163 Peptidase family M50 E3E15_01650 PF12705 PD-(D/E)XK nuclease superfamily E3E15_01650 PF00580 UvrD/REP helicase N-terminal domain E3E15_01650 PF13361 UvrD-like helicase C-terminal domain E3E15_01655 PF13538 UvrD-like helicase C-terminal domain E3E15_01665 PF02666 Phosphatidylserine decarboxylase E3E15_01675 PF01467 Cytidylyltransferase-like E3E15_01675 PF00293 NUDIX domain E3E15_01680 PF12804 MobA-like NTP transferase domain E3E15_01680 PF00132 Bacterial transferase hexapeptide (six repeats) E3E15_01685 PF01380 SIS domain E3E15_01755 PF01165 Ribosomal protein S21 E3E15_01760 PF00313 'Cold-shock' DNA-binding domain E3E15_01770 PF00953 Glycosyl transferase family 4 E3E15_01770 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 E3E15_01775 PF02875 Mur ligase family, glutamate ligase domain E3E15_01775 PF08245 Mur ligase middle domain E3E15_01780 PF01098 Cell cycle protein E3E15_01815 PF02481 DNA recombination-mediator protein A E3E15_01815 PF17782 DprA winged helix domain E3E15_01820 PF00691 OmpA family E3E15_01835 PF02401 LytB protein E3E15_01840 PF07736 Chorismate mutase type I E3E15_01845 PF01066 CDP-alcohol phosphatidyltransferase E3E15_01855 PF01618 MotA/TolQ/ExbB proton channel family E3E15_01860 PF02472 Biopolymer transport protein ExbD/TolR E3E15_01870 PF07676 WD40-like Beta Propeller Repeat E3E15_01885 PF04055 Radical SAM superfamily E3E15_01885 PF18693 TRAM domain E3E15_01885 PF00919 Uncharacterized protein family UPF0004 E3E15_01895 PF13309 HTH domain E3E15_01895 PF08348 YheO-like PAS domain E3E15_01900 PF01925 Sulfite exporter TauE/SafE E3E15_01920 PF00108 Thiolase, N-terminal domain E3E15_01920 PF02803 Thiolase, C-terminal domain E3E15_01925 PF00378 Enoyl-CoA hydratase/isomerase E3E15_01925 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E3E15_01925 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E3E15_01930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3E15_01930 PF02770 Acyl-CoA dehydrogenase, middle domain E3E15_01930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3E15_01930 PF09317 Domain of unknown function (DUF1974) E3E15_01935 PF00501 AMP-binding enzyme E3E15_01935 PF13193 AMP-binding enzyme C-terminal domain E3E15_01955 PF07690 Major Facilitator Superfamily E3E15_01960 PF16326 ABC transporter C-terminal domain E3E15_01960 PF00005 ABC transporter E3E15_01960 PF12848 ABC transporter E3E15_01965 PF03702 Anhydro-N-acetylmuramic acid kinase E3E15_01980 PF12826 Helix-hairpin-helix motif E3E15_01980 PF03119 NAD-dependent DNA ligase C4 zinc finger domain E3E15_01980 PF01653 NAD-dependent DNA ligase adenylation domain E3E15_01980 PF00533 BRCA1 C Terminus (BRCT) domain E3E15_01980 PF03120 NAD-dependent DNA ligase OB-fold domain E3E15_01990 PF17946 RecC C-terminal domain E3E15_01995 PF01026 TatD related DNase E3E15_02005 PF01925 Sulfite exporter TauE/SafE E3E15_02010 PF00005 ABC transporter E3E15_02015 PF01061 ABC-2 type transporter E3E15_02020 PF00535 Glycosyl transferase family 2 E3E15_02030 PF01513 ATP-NAD kinase E3E15_02035 PF17783 CvfB-like winged helix domain E3E15_02035 PF13509 S1 domain E3E15_02040 PF01810 LysE type translocator E3E15_02045 PF02390 Putative methyltransferase E3E15_02065 PF00581 Rhodanese-like domain E3E15_02065 PF11127 Protein of unknown function (DUF2892) E3E15_02070 PF16123 Hydroxyacylglutathione hydrolase C-terminus E3E15_02070 PF00753 Metallo-beta-lactamase superfamily E3E15_02075 PF01925 Sulfite exporter TauE/SafE E3E15_02085 PF03692 Putative zinc- or iron-chelating domain E3E15_02100 PF01029 NusB family E3E15_02105 PF00795 Carbon-nitrogen hydrolase E3E15_02110 PF00155 Aminotransferase class I and II E3E15_02115 PF03129 Anticodon binding domain E3E15_02115 PF04073 Aminoacyl-tRNA editing domain E3E15_02115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3E15_02125 PF02657 Fe-S metabolism associated domain E3E15_02145 PF00753 Metallo-beta-lactamase superfamily E3E15_02145 PF16123 Hydroxyacylglutathione hydrolase C-terminus E3E15_02190 PF08329 Chitinase A, N-terminal domain E3E15_02190 PF00704 Glycosyl hydrolases family 18 E3E15_02200 PF00083 Sugar (and other) transporter E3E15_02205 PF01966 HD domain E3E15_02205 PF13286 Phosphohydrolase-associated domain E3E15_02210 PF00860 Permease family E3E15_02225 PF06150 ChaB E3E15_02240 PF07690 Major Facilitator Superfamily E3E15_02245 PF01042 Endoribonuclease L-PSP E3E15_02250 PF00375 Sodium:dicarboxylate symporter family E3E15_02255 PF00664 ABC transporter transmembrane region E3E15_02255 PF00005 ABC transporter E3E15_02260 PF00664 ABC transporter transmembrane region E3E15_02260 PF00005 ABC transporter E3E15_02285 PF00480 ROK family E3E15_02290 PF00155 Aminotransferase class I and II E3E15_02300 PF02463 RecF/RecN/SMC N terminal domain E3E15_02305 PF00872 Transposase, Mutator family E3E15_02325 PF02403 Seryl-tRNA synthetase N-terminal domain E3E15_02325 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3E15_02330 PF06415 BPG-independent PGAM N-terminus (iPGM_N) E3E15_02330 PF01676 Metalloenzyme superfamily E3E15_02335 PF01565 FAD binding domain E3E15_02335 PF13183 4Fe-4S dicluster domain E3E15_02335 PF02913 FAD linked oxidases, C-terminal domain E3E15_02345 PF00313 'Cold-shock' DNA-binding domain E3E15_02350 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E3E15_02355 PF01048 Phosphorylase superfamily E3E15_02360 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) E3E15_02375 PF03458 UPF0126 domain E3E15_02390 PF00675 Insulinase (Peptidase family M16) E3E15_02390 PF05193 Peptidase M16 inactive domain E3E15_02395 PF03739 Lipopolysaccharide export system permease LptF/LptG E3E15_02400 PF03739 Lipopolysaccharide export system permease LptF/LptG E3E15_02405 PF02789 Cytosol aminopeptidase family, N-terminal domain E3E15_02405 PF00883 Cytosol aminopeptidase family, catalytic domain E3E15_02410 PF00478 IMP dehydrogenase / GMP reductase domain E3E15_02410 PF00571 CBS domain E3E15_02420 PF00342 Phosphoglucose isomerase E3E15_02425 PF07963 Prokaryotic N-terminal methylation motif E3E15_02425 PF00114 Pilin (bacterial filament) E3E15_02430 PF01272 Transcription elongation factor, GreA/GreB, C-term E3E15_02430 PF03449 Transcription elongation factor, N-terminal E3E15_02435 PF17755 UvrA DNA-binding domain E3E15_02435 PF17760 UvrA interaction domain E3E15_02440 PF00004 ATPase family associated with various cellular activities (AAA) E3E15_02440 PF17862 AAA+ lid domain E3E15_02440 PF06480 FtsH Extracellular E3E15_02440 PF01434 Peptidase family M41 E3E15_02460 PF00872 Transposase, Mutator family E3E15_02475 PF07516 SecA Wing and Scaffold domain E3E15_02475 PF02810 SEC-C motif E3E15_02475 PF07517 SecA DEAD-like domain E3E15_02475 PF01043 SecA preprotein cross-linking domain E3E15_02480 PF00829 Ribosomal prokaryotic L21 protein E3E15_02485 PF01016 Ribosomal L27 protein E3E15_02495 PF00528 Binding-protein-dependent transport system inner membrane component E3E15_02500 PF00528 Binding-protein-dependent transport system inner membrane component E3E15_02505 PF00005 ABC transporter E3E15_02505 PF08402 TOBE domain E3E15_02535 PF01168 Alanine racemase, N-terminal domain E3E15_02535 PF00842 Alanine racemase, C-terminal domain E3E15_02540 PF13520 Amino acid permease E3E15_02555 PF00800 Prephenate dehydratase E3E15_02555 PF01842 ACT domain E3E15_02555 PF01817 Chorismate mutase type II E3E15_02560 PF00149 Calcineurin-like phosphoesterase E3E15_02560 PF02872 5'-nucleotidase, C-terminal domain E3E15_02570 PF03313 Serine dehydratase alpha chain E3E15_02570 PF03315 Serine dehydratase beta chain E3E15_02575 PF00266 Aminotransferase class-V E3E15_02580 PF01521 Iron-sulphur cluster biosynthesis E3E15_02585 PF01883 Iron-sulfur cluster assembly protein E3E15_02590 PF01467 Cytidylyltransferase-like E3E15_02595 PF00037 4Fe-4S binding domain E3E15_02605 PF00691 OmpA family E3E15_02605 PF01389 OmpA-like transmembrane domain E3E15_02620 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3E15_02620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3E15_02620 PF02824 TGS domain E3E15_02620 PF03129 Anticodon binding domain E3E15_02625 PF05198 Translation initiation factor IF-3, N-terminal domain E3E15_02625 PF00707 Translation initiation factor IF-3, C-terminal domain E3E15_02630 PF01632 Ribosomal protein L35 E3E15_02635 PF00453 Ribosomal protein L20 E3E15_02645 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E3E15_02660 PF01134 Glucose inhibited division protein A E3E15_02660 PF13932 GidA associated domain E3E15_02680 PF08411 Exonuclease C-terminal E3E15_02680 PF00929 Exonuclease E3E15_02685 PF17757 UvrB interaction domain E3E15_02685 PF12344 Ultra-violet resistance protein B E3E15_02685 PF02151 UvrB/uvrC motif E3E15_02685 PF04851 Type III restriction enzyme, res subunit E3E15_02685 PF00271 Helicase conserved C-terminal domain E3E15_02695 PF01177 Asp/Glu/Hydantoin racemase E3E15_02715 PF00005 ABC transporter E3E15_02715 PF12399 Branched-chain amino acid ATP-binding cassette transporter E3E15_02720 PF01557 Fumarylacetoacetate (FAA) hydrolase family E3E15_02725 PF01048 Phosphorylase superfamily E3E15_02730 PF01416 tRNA pseudouridine synthase E3E15_02735 PF07724 AAA domain (Cdc48 subfamily) E3E15_02735 PF10431 C-terminal, D2-small domain, of ClpB protein E3E15_02735 PF00004 ATPase family associated with various cellular activities (AAA) E3E15_02740 PF00227 Proteasome subunit E3E15_02750 PF10437 Bacterial lipoate protein ligase C-terminus E3E15_02750 PF03099 Biotin/lipoate A/B protein ligase family E3E15_02755 PF00579 tRNA synthetases class I (W and Y) E3E15_02755 PF01479 S4 domain E3E15_02780 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system E3E15_02790 PF00464 Serine hydroxymethyltransferase E3E15_02795 PF04751 Protein of unknown function (DUF615) E3E15_02800 PF00348 Polyprenyl synthetase E3E15_02820 PF01171 PP-loop family E3E15_02850 PF03466 LysR substrate binding domain E3E15_02850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3E15_02855 PF08534 Redoxin E3E15_02870 PF08245 Mur ligase middle domain E3E15_02875 PF14102 Capsule biosynthesis CapC E3E15_02885 PF02824 TGS domain E3E15_02885 PF13291 ACT domain E3E15_02885 PF04607 Region found in RelA / SpoT proteins E3E15_02890 PF00582 Universal stress protein family E3E15_02890 PF00999 Sodium/hydrogen exchanger family E3E15_02895 PF02132 RecR protein E3E15_02895 PF13662 Toprim domain E3E15_02900 PF02575 YbaB/EbfC DNA-binding family E3E15_02905 PF03033 Glycosyltransferase family 28 N-terminal domain E3E15_02905 PF04101 Glycosyltransferase family 28 C-terminal domain E3E15_02910 PF01597 Glycine cleavage H-protein E3E15_02920 PF00557 Metallopeptidase family M24 E3E15_02930 PF03989 DNA gyrase C-terminal domain, beta-propeller E3E15_02930 PF00521 DNA gyrase/topoisomerase IV, subunit A E3E15_02935 PF00872 Transposase, Mutator family E3E15_02950 PF01048 Phosphorylase superfamily E3E15_02955 PF01464 Transglycosylase SLT domain E3E15_02955 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3E15_02960 PF02811 PHP domain E3E15_02960 PF14579 Helix-hairpin-helix motif E3E15_02960 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E3E15_02960 PF07733 Bacterial DNA polymerase III alpha NTPase domain E3E15_02960 PF01336 OB-fold nucleic acid binding domain E3E15_02965 PF04381 Putative exonuclease, RdgC E3E15_02970 PF14493 Helix-turn-helix domain E3E15_02970 PF05970 PIF1-like helicase E3E15_02990 PF02687 FtsX-like permease family E3E15_02990 PF12704 MacB-like periplasmic core domain E3E15_02995 PF00005 ABC transporter E3E15_03015 PF00872 Transposase, Mutator family E3E15_03025 PF02423 Ornithine cyclodeaminase/mu-crystallin family E3E15_03030 PF01276 Orn/Lys/Arg decarboxylase, major domain E3E15_03030 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain E3E15_03030 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain E3E15_03035 PF08669 Glycine cleavage T-protein C-terminal barrel domain E3E15_03035 PF01571 Aminomethyltransferase folate-binding domain E3E15_03040 PF01597 Glycine cleavage H-protein E3E15_03045 PF02347 Glycine cleavage system P-protein E3E15_03050 PF02347 Glycine cleavage system P-protein E3E15_03055 PF02091 Glycyl-tRNA synthetase alpha subunit E3E15_03060 PF02875 Mur ligase family, glutamate ligase domain E3E15_03060 PF01225 Mur ligase family, catalytic domain E3E15_03060 PF08245 Mur ligase middle domain E3E15_03070 PF01380 SIS domain E3E15_03075 PF00083 Sugar (and other) transporter E3E15_03080 PF01784 NIF3 (NGG1p interacting factor 3) E3E15_03085 PF04551 GcpE protein E3E15_03095 PF00557 Metallopeptidase family M24 E3E15_03095 PF01321 Creatinase/Prolidase N-terminal domain E3E15_03110 PF03695 Uncharacterised protein family (UPF0149) E3E15_03115 PF01494 FAD binding domain E3E15_03120 PF01494 FAD binding domain E3E15_03125 PF02547 Queuosine biosynthesis protein E3E15_03135 PF14437 MafB19-like deaminase E3E15_03140 PF00857 Isochorismatase family E3E15_03145 PF00999 Sodium/hydrogen exchanger family E3E15_03150 PF00892 EamA-like transporter family E3E15_03155 PF01571 Aminomethyltransferase folate-binding domain E3E15_03160 PF13361 UvrD-like helicase C-terminal domain E3E15_03160 PF00580 UvrD/REP helicase N-terminal domain E3E15_03175 PF00083 Sugar (and other) transporter E3E15_03195 PF00872 Transposase, Mutator family E3E15_03200 PF10415 Fumarase C C-terminus E3E15_03200 PF00206 Lyase E3E15_03205 PF00916 Sulfate permease family E3E15_03205 PF01740 STAS domain E3E15_03215 PF01965 DJ-1/PfpI family E3E15_03220 PF12848 ABC transporter E3E15_03220 PF00005 ABC transporter E3E15_03225 PF02028 BCCT, betaine/carnitine/choline family transporter E3E15_03230 PF00588 SpoU rRNA Methylase family E3E15_03230 PF08032 RNA 2'-O ribose methyltransferase substrate binding E3E15_03235 PF00011 Hsp20/alpha crystallin family E3E15_03240 PF00571 CBS domain E3E15_03255 PF07690 Major Facilitator Superfamily E3E15_03270 PF08331 Domain of unknown function (DUF1730) E3E15_03285 PF13361 UvrD-like helicase C-terminal domain E3E15_03285 PF00580 UvrD/REP helicase N-terminal domain E3E15_03305 PF00462 Glutaredoxin E3E15_03310 PF00462 Glutaredoxin E3E15_03315 PF00317 Ribonucleotide reductase, all-alpha domain E3E15_03315 PF02867 Ribonucleotide reductase, barrel domain E3E15_03315 PF03477 ATP cone domain E3E15_03320 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain E3E15_03320 PF00056 lactate/malate dehydrogenase, NAD binding domain E3E15_03330 PF03232 Ubiquinone biosynthesis protein COQ7 E3E15_03340 PF00899 ThiF family E3E15_03350 PF00578 AhpC/TSA family E3E15_03350 PF10417 C-terminal domain of 1-Cys peroxiredoxin E3E15_03360 PF03831 PhnA domain E3E15_03360 PF08274 PhnA Zinc-Ribbon E3E15_03370 PF00929 Exonuclease E3E15_03385 PF03435 Saccharopine dehydrogenase NADP binding domain E3E15_03385 PF16653 Saccharopine dehydrogenase C-terminal domain E3E15_03390 PF00171 Aldehyde dehydrogenase family E3E15_03400 PF01165 Ribosomal protein S21 E3E15_03405 PF09424 Yqey-like protein E3E15_03410 PF13662 Toprim domain E3E15_03410 PF08278 DNA primase DnaG DnaB-binding E3E15_03410 PF10410 DnaB-helicase binding domain of primase E3E15_03410 PF08275 DNA primase catalytic core, N-terminal domain E3E15_03410 PF01807 CHC2 zinc finger E3E15_03415 PF04546 Sigma-70, non-essential region E3E15_03415 PF03979 Sigma-70 factor, region 1.1 E3E15_03415 PF00140 Sigma-70 factor, region 1.2 E3E15_03415 PF04542 Sigma-70 region 2 E3E15_03415 PF04545 Sigma-70, region 4 E3E15_03415 PF04539 Sigma-70 region 3 E3E15_03425 PF01595 Cyclin M transmembrane N-terminal domain E3E15_03425 PF03471 Transporter associated domain E3E15_03425 PF00571 CBS domain E3E15_03430 PF00132 Bacterial transferase hexapeptide (six repeats) E3E15_03435 PF01926 50S ribosome-binding GTPase E3E15_03435 PF06071 Protein of unknown function (DUF933) E3E15_03440 PF01195 Peptidyl-tRNA hydrolase E3E15_03455 PF01478 Type IV leader peptidase family E3E15_03455 PF06750 Bacterial Peptidase A24 N-terminal domain E3E15_03460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3E15_03460 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3E15_03465 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family E3E15_03470 PF00291 Pyridoxal-phosphate dependent enzyme E3E15_03475 PF00301 Rubredoxin E3E15_03480 PF02245 Methylpurine-DNA glycosylase (MPG) E3E15_03490 PF02696 Uncharacterized ACR, YdiU/UPF0061 family E3E15_03500 PF04399 Glutaredoxin 2, C terminal domain E3E15_03500 PF13417 Glutathione S-transferase, N-terminal domain E3E15_03505 PF04060 Putative Fe-S cluster E3E15_03510 PF00730 HhH-GPD superfamily base excision DNA repair protein E3E15_03510 PF00633 Helix-hairpin-helix motif E3E15_03510 PF10576 Iron-sulfur binding domain of endonuclease III E3E15_03525 PF01027 Inhibitor of apoptosis-promoting Bax1 E3E15_03530 PF17757 UvrB interaction domain E3E15_03530 PF02559 CarD-like/TRCF domain E3E15_03530 PF00270 DEAD/DEAH box helicase E3E15_03530 PF03461 TRCF domain E3E15_03530 PF00271 Helicase conserved C-terminal domain E3E15_03550 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family E3E15_03550 PF04055 Radical SAM superfamily E3E15_03560 PF01709 Transcriptional regulator E3E15_03565 PF02075 Crossover junction endodeoxyribonuclease RuvC E3E15_03575 PF00872 Transposase, Mutator family E3E15_03580 PF07499 RuvA, C-terminal domain E3E15_03580 PF01330 RuvA N terminal domain E3E15_03585 PF07859 alpha/beta hydrolase fold E3E15_03585 PF00331 Glycosyl hydrolase family 10 E3E15_03590 PF04055 Radical SAM superfamily E3E15_03595 PF01926 50S ribosome-binding GTPase E3E15_03595 PF07650 KH domain E3E15_03610 PF01565 FAD binding domain E3E15_03610 PF02913 FAD linked oxidases, C-terminal domain E3E15_03615 PF05191 Adenylate kinase, active site lid E3E15_03640 PF07660 Secretin and TonB N terminus short domain E3E15_03640 PF03958 Bacterial type II/III secretion system short domain E3E15_03640 PF00263 Bacterial type II and III secretion system protein E3E15_03640 PF11741 AMIN domain E3E15_03645 PF01202 Shikimate kinase E3E15_03650 PF01761 3-dehydroquinate synthase E3E15_03660 PF03937 Flavinator of succinate dehydrogenase E3E15_03665 PF18327 Proline utilization A proline dehydrogenase N-terminal domain E3E15_03665 PF14850 DNA-binding domain of Proline dehydrogenase E3E15_03665 PF01619 Proline dehydrogenase E3E15_03665 PF00171 Aldehyde dehydrogenase family E3E15_03675 PF00872 Transposase, Mutator family E3E15_03685 PF07690 Major Facilitator Superfamily E3E15_03690 PF02441 Flavoprotein E3E15_03690 PF04127 DNA / pantothenate metabolism flavoprotein E3E15_03695 PF00872 Transposase, Mutator family E3E15_03700 PF03441 FAD binding domain of DNA photolyase E3E15_03700 PF00875 DNA photolyase E3E15_03705 PF00762 Ferrochelatase E3E15_03730 PF00800 Prephenate dehydratase E3E15_03730 PF01817 Chorismate mutase type II E3E15_03735 PF00255 Glutathione peroxidase E3E15_03740 PF03853 YjeF-related protein N-terminus E3E15_03740 PF01256 Carbohydrate kinase E3E15_03755 PF02272 DHHA1 domain E3E15_03755 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3E15_03755 PF01411 tRNA synthetases class II (A) E3E15_03765 PF00883 Cytosol aminopeptidase family, catalytic domain E3E15_03765 PF12404 Peptidase E3E15_03770 PF00923 Transaldolase/Fructose-6-phosphate aldolase E3E15_03780 PF13520 Amino acid permease E3E15_03785 PF02254 TrkA-N domain E3E15_03785 PF02080 TrkA-C domain E3E15_03790 PF02082 Transcriptional regulator E3E15_03795 PF01458 Uncharacterized protein family (UPF0051) E3E15_03800 PF00005 ABC transporter E3E15_03805 PF01458 Uncharacterized protein family (UPF0051) E3E15_03815 PF00085 Thioredoxin E3E15_03835 PF13613 Helix-turn-helix of DDE superfamily endonuclease E3E15_03835 PF13359 DDE superfamily endonuclease E3E15_03855 PF00293 NUDIX domain E3E15_03860 PF02622 Uncharacterized ACR, COG1678 E3E15_03865 PF03652 Holliday junction resolvase E3E15_03870 PF00133 tRNA synthetases class I (I, L, M and V) E3E15_03870 PF13603 Leucyl-tRNA synthetase, Domain 2 E3E15_03870 PF08264 Anticodon-binding domain of tRNA E3E15_03880 PF00924 Mechanosensitive ion channel E3E15_03885 PF00692 dUTPase E3E15_03890 PF10609 NUBPL iron-transfer P-loop NTPase E3E15_03895 PF13396 Phospholipase_D-nuclease N-terminal E3E15_03895 PF13091 PLD-like domain E3E15_03900 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain E3E15_03900 PF01588 Putative tRNA binding domain E3E15_03900 PF03147 Ferredoxin-fold anticodon binding domain E3E15_03900 PF03483 B3/4 domain E3E15_03900 PF03484 tRNA synthetase B5 domain E3E15_03910 PF01409 tRNA synthetases class II core domain (F) E3E15_03910 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain E3E15_03915 PF00854 POT family E3E15_03920 PF08125 Mannitol dehydrogenase C-terminal domain E3E15_03920 PF01232 Mannitol dehydrogenase Rossmann domain E3E15_03925 PF03786 D-mannonate dehydratase (UxuA) E3E15_03930 PF00294 pfkB family carbohydrate kinase E3E15_03935 PF01081 KDPG and KHG aldolase E3E15_03940 PF02614 Glucuronate isomerase E3E15_03945 PF00083 Sugar (and other) transporter E3E15_03955 PF05496 Holliday junction DNA helicase RuvB P-loop domain E3E15_03955 PF05491 RuvB C-terminal winged helix domain E3E15_03955 PF17864 RuvB AAA lid domain E3E15_03970 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family E3E15_03975 PF00962 Adenosine/AMP deaminase E3E15_03980 PF01915 Glycosyl hydrolase family 3 C-terminal domain E3E15_03980 PF00933 Glycosyl hydrolase family 3 N terminal domain E3E15_03995 PF00872 Transposase, Mutator family E3E15_04000 PF00271 Helicase conserved C-terminal domain E3E15_04000 PF00270 DEAD/DEAH box helicase E3E15_04005 PF01227 GTP cyclohydrolase I E3E15_04015 PF00248 Aldo/keto reductase family E3E15_04025 PF00117 Glutamine amidotransferase class-I E3E15_04030 PF04715 Anthranilate synthase component I, N terminal region E3E15_04030 PF00425 chorismate binding enzyme E3E15_04030 PF00117 Glutamine amidotransferase class-I E3E15_04035 PF00501 AMP-binding enzyme E3E15_04035 PF13193 AMP-binding enzyme C-terminal domain E3E15_04050 PF00809 Pterin binding enzyme E3E15_04050 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E3E15_04055 PF07859 alpha/beta hydrolase fold E3E15_04060 PF00202 Aminotransferase class-III E3E15_04065 PF02951 Prokaryotic glutathione synthetase, N-terminal domain E3E15_04065 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain E3E15_04070 PF02911 Formyl transferase, C-terminal domain E3E15_04070 PF00551 Formyl transferase E3E15_04080 PF10672 S-adenosylmethionine-dependent methyltransferase E3E15_04080 PF02926 THUMP domain E3E15_04080 PF01170 Putative RNA methylase family UPF0020 E3E15_04100 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E3E15_04100 PF02779 Transketolase, pyrimidine binding domain E3E15_04100 PF02780 Transketolase, C-terminal domain E3E15_04105 PF02540 NAD synthase E3E15_04105 PF00117 Glutamine amidotransferase class-I E3E15_04105 PF00958 GMP synthase C terminal domain E3E15_04130 PF01176 Translation initiation factor 1A / IF-1 E3E15_04135 PF01925 Sulfite exporter TauE/SafE E3E15_04145 PF00448 SRP54-type protein, GTPase domain E3E15_04145 PF02881 SRP54-type protein, helical bundle domain E3E15_04145 PF02978 Signal peptide binding domain E3E15_04150 PF00793 DAHP synthetase I family E3E15_04160 PF05430 S-adenosyl-L-methionine-dependent methyltransferase E3E15_04160 PF01266 FAD dependent oxidoreductase E3E15_04165 PF03658 RnfH family Ubiquitin E3E15_04170 PF03364 Polyketide cyclase / dehydrase and lipid transport E3E15_04175 PF01668 SmpB protein E3E15_04180 PF01171 PP-loop family E3E15_04185 PF03372 Endonuclease/Exonuclease/phosphatase family E3E15_04195 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3E15_04195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3E15_04205 PF00854 POT family E3E15_04215 PF13742 OB-fold nucleic acid binding domain E3E15_04215 PF02601 Exonuclease VII, large subunit E3E15_04220 PF00719 Inorganic pyrophosphatase E3E15_04225 PF00768 D-alanyl-D-alanine carboxypeptidase E3E15_04225 PF07943 Penicillin-binding protein 5, C-terminal domain E3E15_04230 PF04359 Protein of unknown function (DUF493) E3E15_04235 PF03099 Biotin/lipoate A/B protein ligase family E3E15_04245 PF01386 Ribosomal L25p family E3E15_04250 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase E3E15_04250 PF14572 Phosphoribosyl synthetase-associated domain E3E15_04260 PF00814 Glycoprotease family E3E15_04265 PF01979 Amidohydrolase family E3E15_04270 PF01926 50S ribosome-binding GTPase E3E15_04280 PF00899 ThiF family E3E15_04285 PF00581 Rhodanese-like domain E3E15_04285 PF00899 ThiF family E3E15_04295 PF00682 HMGL-like E3E15_04305 PF00265 Thymidine kinase E3E15_04315 PF01938 TRAM domain E3E15_04315 PF04055 Radical SAM superfamily E3E15_04315 PF00919 Uncharacterized protein family UPF0004 E3E15_04320 PF02562 PhoH-like protein E3E15_04325 PF02130 Uncharacterized protein family UPF0054 E3E15_04330 PF03471 Transporter associated domain E3E15_04330 PF00571 CBS domain E3E15_04335 PF00795 Carbon-nitrogen hydrolase E3E15_04340 PF02646 RmuC family E3E15_04345 PF08459 UvrC Helix-hairpin-helix N-terminal E3E15_04345 PF02151 UvrB/uvrC motif E3E15_04345 PF01541 GIY-YIG catalytic domain E3E15_04350 PF01612 3'-5' exonuclease E3E15_04350 PF00570 HRDC domain E3E15_04355 PF07690 Major Facilitator Superfamily E3E15_04360 PF05746 DALR anticodon binding domain E3E15_04360 PF02092 Glycyl-tRNA synthetase beta subunit E3E15_04365 PF01026 TatD related DNase E3E15_04370 PF02463 RecF/RecN/SMC N terminal domain E3E15_04390 PF01812 5-formyltetrahydrofolate cyclo-ligase family E3E15_04400 PF09335 SNARE associated Golgi protein E3E15_04405 PF09335 SNARE associated Golgi protein E3E15_04410 PF02565 Recombination protein O C terminal E3E15_04410 PF11967 Recombination protein O N terminal E3E15_04420 PF00266 Aminotransferase class-V E3E15_04425 PF10150 Ribonuclease E/G family E3E15_04425 PF00575 S1 RNA binding domain E3E15_04425 PF12111 Polyribonucleotide phosphorylase C terminal E3E15_04430 PF01790 Prolipoprotein diacylglyceryl transferase E3E15_04435 PF00303 Thymidylate synthase E3E15_04440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3E15_04440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3E15_04445 PF11734 TilS substrate C-terminal domain E3E15_04445 PF09179 TilS substrate binding domain E3E15_04445 PF01171 PP-loop family E3E15_04450 PF00202 Aminotransferase class-III E3E15_04455 PF06968 Biotin and Thiamin Synthesis associated domain E3E15_04455 PF04055 Radical SAM superfamily E3E15_04460 PF00155 Aminotransferase class I and II E3E15_04475 PF08279 HTH domain E3E15_04475 PF03099 Biotin/lipoate A/B protein ligase family E3E15_04475 PF02237 Biotin protein ligase C terminal domain E3E15_04480 PF00625 Guanylate kinase E3E15_04510 PF00155 Aminotransferase class I and II E3E15_04520 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) E3E15_04540 PF03880 DbpA RNA binding domain E3E15_04540 PF00271 Helicase conserved C-terminal domain E3E15_04540 PF00270 DEAD/DEAH box helicase E3E15_04555 PF02348 Cytidylyltransferase E3E15_04560 PF03966 Trm112p-like protein E3E15_04580 PF16177 Acetyl-coenzyme A synthetase N-terminus E3E15_04580 PF00501 AMP-binding enzyme E3E15_04580 PF13193 AMP-binding enzyme C-terminal domain E3E15_04585 PF00483 Nucleotidyl transferase E3E15_04590 PF01545 Cation efflux family E3E15_04590 PF16916 Dimerisation domain of Zinc Transporter E3E15_04605 PF00155 Aminotransferase class I and II E3E15_04620 PF01479 S4 domain E3E15_04620 PF00849 RNA pseudouridylate synthase E3E15_04630 PF04055 Radical SAM superfamily E3E15_04635 PF03796 DnaB-like helicase C terminal domain E3E15_04635 PF00772 DnaB-like helicase N terminal domain E3E15_04640 PF03948 Ribosomal protein L9, C-terminal domain E3E15_04640 PF01281 Ribosomal protein L9, N-terminal domain E3E15_04645 PF01084 Ribosomal protein S18 E3E15_04650 PF01250 Ribosomal protein S6 E3E15_04655 PF01218 Coproporphyrinogen III oxidase E3E15_04665 PF00266 Aminotransferase class-V E3E15_04670 PF02224 Cytidylate kinase E3E15_04700 PF01112 Asparaginase E3E15_04705 PF03575 Peptidase family S51 E3E15_04710 PF00294 pfkB family carbohydrate kinase E3E15_04720 PF00834 Ribulose-phosphate 3 epimerase family E3E15_04725 PF01380 SIS domain E3E15_04725 PF00571 CBS domain E3E15_04735 PF03641 Possible lysine decarboxylase E3E15_04750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3E15_04755 PF02592 Putative vitamin uptake transporter E3E15_04760 PF01926 50S ribosome-binding GTPase E3E15_04765 PF01451 Low molecular weight phosphotyrosine protein phosphatase E3E15_04770 PF01145 SPFH domain / Band 7 family E3E15_04775 PF01145 SPFH domain / Band 7 family E3E15_04780 PF13167 GTP-binding GTPase N-terminal E3E15_04780 PF01926 50S ribosome-binding GTPase E3E15_04780 PF16360 GTP-binding GTPase Middle Region E3E15_04785 PF17209 Hfq protein E3E15_04800 PF00216 Bacterial DNA-binding protein E3E15_04805 PF00004 ATPase family associated with various cellular activities (AAA) E3E15_04805 PF02190 ATP-dependent protease La (LON) substrate-binding domain E3E15_04805 PF05362 Lon protease (S16) C-terminal proteolytic domain E3E15_04810 PF10431 C-terminal, D2-small domain, of ClpB protein E3E15_04810 PF06689 ClpX C4-type zinc finger E3E15_04810 PF07724 AAA domain (Cdc48 subfamily) E3E15_04815 PF00574 Clp protease E3E15_04820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3E15_04820 PF05698 Bacterial trigger factor protein (TF) C-terminus E3E15_04820 PF05697 Bacterial trigger factor protein (TF) E3E15_04830 PF00484 Carbonic anhydrase E3E15_04835 PF17763 Glutaminase/Asparaginase C-terminal domain E3E15_04835 PF00710 Asparaginase, N-terminal E3E15_04840 PF00075 RNase H E3E15_04850 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3E15_04855 PF04545 Sigma-70, region 4 E3E15_04855 PF04542 Sigma-70 region 2 E3E15_04855 PF00140 Sigma-70 factor, region 1.2 E3E15_04865 PF07549 SecD/SecF GG Motif E3E15_04865 PF02355 Protein export membrane protein E3E15_04870 PF02355 Protein export membrane protein E3E15_04870 PF07549 SecD/SecF GG Motif E3E15_04870 PF13721 SecD export protein N-terminal TM region E3E15_04875 PF02699 Preprotein translocase subunit E3E15_04885 PF01702 Queuine tRNA-ribosyltransferase E3E15_04890 PF02660 Glycerol-3-phosphate acyltransferase E3E15_04895 PF00005 ABC transporter E3E15_04895 PF09383 NIL domain E3E15_04900 PF03180 NLPA lipoprotein E3E15_04910 PF02542 YgbB family E3E15_04920 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3E15_04920 PF08245 Mur ligase middle domain E3E15_04920 PF02875 Mur ligase family, glutamate ligase domain E3E15_04925 PF08443 RimK-like ATP-grasp domain E3E15_04925 PF08245 Mur ligase middle domain E3E15_04925 PF02875 Mur ligase family, glutamate ligase domain E3E15_04930 PF02464 Competence-damaged protein E3E15_04930 PF18146 Damage-inducible protein CinA KH domain E3E15_04930 PF00994 Probable molybdopterin binding domain E3E15_04935 PF03009 Glycerophosphoryl diester phosphodiesterase family E3E15_04940 PF00437 Type II/IV secretion system protein E3E15_04940 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain E3E15_04945 PF00482 Type II secretion system (T2SS), protein F E3E15_04965 PF03601 Conserved hypothetical protein 698 E3E15_04970 PF00459 Inositol monophosphatase family E3E15_04975 PF01189 16S rRNA methyltransferase RsmB/F E3E15_04975 PF01029 NusB family E3E15_05015 PF00155 Aminotransferase class I and II E3E15_05020 PF00107 Zinc-binding dehydrogenase E3E15_05020 PF08240 Alcohol dehydrogenase GroES-like domain E3E15_05025 PF03222 Tryptophan/tyrosine permease family E3E15_05030 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase E3E15_05035 PF04977 Septum formation initiator E3E15_05040 PF03952 Enolase, N-terminal domain E3E15_05040 PF00113 Enolase, C-terminal TIM barrel domain E3E15_05050 PF04973 Nicotinamide mononucleotide transporter E3E15_05055 PF05958 tRNA (Uracil-5-)-methyltransferase E3E15_05065 PF01192 RNA polymerase Rpb6 E3E15_05070 PF00485 Phosphoribulokinase / Uridine kinase family E3E15_05075 PF00793 DAHP synthetase I family E3E15_05080 PF01521 Iron-sulphur cluster biosynthesis E3E15_05085 PF00013 KH domain E3E15_05085 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain E3E15_05085 PF01138 3' exoribonuclease family, domain 1 E3E15_05085 PF00575 S1 RNA binding domain E3E15_05085 PF03725 3' exoribonuclease family, domain 2 E3E15_05090 PF00312 Ribosomal protein S15 E3E15_05095 PF00905 Penicillin binding protein transpeptidase domain E3E15_05095 PF03717 Penicillin-binding Protein dimerisation domain E3E15_05100 PF04999 Cell division protein FtsL E3E15_05105 PF01795 MraW methylase family E3E15_05110 PF01553 Acyltransferase E3E15_05110 PF00501 AMP-binding enzyme E3E15_05110 PF13193 AMP-binding enzyme C-terminal domain E3E15_05115 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain E3E15_05115 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain E3E15_05115 PF06827 Zinc finger found in FPG and IleRS E3E15_05130 PF00872 Transposase, Mutator family E3E15_05140 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3E15_05150 PF03932 CutC family E3E15_05160 PF02629 CoA binding domain E3E15_05160 PF00549 CoA-ligase E3E15_05165 PF00549 CoA-ligase E3E15_05165 PF08442 ATP-grasp domain E3E15_05175 PF01207 Dihydrouridine synthase (Dus) E3E15_05185 PF00986 DNA gyrase B subunit, carboxyl terminus E3E15_05185 PF18053 DNA gyrase B subunit insert domain E3E15_05185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3E15_05185 PF01751 Toprim domain E3E15_05185 PF00204 DNA gyrase B E3E15_05195 PF00872 Transposase, Mutator family E3E15_05200 PF01119 DNA mismatch repair protein, C-terminal domain E3E15_05200 PF08676 MutL C terminal dimerisation domain E3E15_05210 PF03193 RsgA GTPase E3E15_05215 PF00750 tRNA synthetases class I (R) E3E15_05215 PF03485 Arginyl tRNA synthetase N terminal domain E3E15_05215 PF05746 DALR anticodon binding domain E3E15_05220 PF03968 OstA-like protein E3E15_05220 PF04453 LPS transport system D E3E15_05225 PF00639 PPIC-type PPIASE domain E3E15_05225 PF09312 SurA N-terminal domain E3E15_05230 PF00398 Ribosomal RNA adenine dimethylase E3E15_05235 PF00149 Calcineurin-like phosphoesterase E3E15_05240 PF01220 Dehydroquinase class II E3E15_05245 PF00364 Biotin-requiring enzyme E3E15_05250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3E15_05250 PF00289 Biotin carboxylase, N-terminal domain E3E15_05250 PF02785 Biotin carboxylase C-terminal domain E3E15_05260 PF00152 tRNA synthetases class II (D, K and N) E3E15_05270 PF17768 RecJ OB domain E3E15_05270 PF02272 DHHA1 domain E3E15_05270 PF01368 DHH family E3E15_05275 PF01594 AI-2E family transporter E3E15_05280 PF13520 Amino acid permease E3E15_05285 PF13416 Bacterial extracellular solute-binding protein E3E15_05300 PF16177 Acetyl-coenzyme A synthetase N-terminus E3E15_05300 PF13193 AMP-binding enzyme C-terminal domain E3E15_05300 PF00501 AMP-binding enzyme E3E15_05305 PF00588 SpoU rRNA Methylase family E3E15_05310 PF00490 Delta-aminolevulinic acid dehydratase E3E15_05315 PF01985 CRS1 / YhbY (CRM) domain E3E15_05320 PF09115 DNA polymerase III, delta subunit, C terminal E3E15_05325 PF08496 Peptidase family S49 N-terminal E3E15_05325 PF01343 Peptidase family S49 E3E15_05330 PF02798 Glutathione S-transferase, N-terminal domain E3E15_05330 PF00043 Glutathione S-transferase, C-terminal domain E3E15_05335 PF04358 DsrC like protein E3E15_05340 PF04362 Bacterial Fe(2+) trafficking E3E15_05350 PF01569 PAP2 superfamily E3E15_05375 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain E3E15_05375 PF02222 ATP-grasp domain E3E15_05380 PF00731 AIR carboxylase E3E15_05385 PF00551 Formyl transferase E3E15_05390 PF01259 SAICAR synthetase E3E15_05395 PF02769 AIR synthase related protein, C-terminal domain E3E15_05395 PF00586 AIR synthase related protein, N-terminal domain E3E15_05400 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain E3E15_05400 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E3E15_05410 PF07963 Prokaryotic N-terminal methylation motif E3E15_05410 PF00114 Pilin (bacterial filament) E3E15_05415 PF01050 Mannose-6-phosphate isomerase E3E15_05415 PF00483 Nucleotidyl transferase E3E15_05420 PF00080 Copper/zinc superoxide dismutase (SODC) E3E15_05425 PF01264 Chorismate synthase E3E15_05430 PF09335 SNARE associated Golgi protein E3E15_05440 PF18073 Rubredoxin metal binding domain E3E15_05450 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus E3E15_05450 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus E3E15_05455 PF00403 Heavy-metal-associated domain E3E15_05460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3E15_05460 PF03466 LysR substrate binding domain E3E15_05470 PF01435 Peptidase family M48 E3E15_05480 PF03725 3' exoribonuclease family, domain 2 E3E15_05480 PF01138 3' exoribonuclease family, domain 1 E3E15_05490 PF01040 UbiA prenyltransferase family E3E15_05505 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system E3E15_05510 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system E3E15_05515 PF13784 Fic/DOC family N-terminal E3E15_05515 PF02661 Fic/DOC family E3E15_05530 PF02796 Helix-turn-helix domain of resolvase E3E15_05530 PF00239 Resolvase, N terminal domain E3E15_05570 PF01050 Mannose-6-phosphate isomerase E3E15_05570 PF00483 Nucleotidyl transferase E3E15_05580 PF00535 Glycosyl transferase family 2 E3E15_05585 PF00535 Glycosyl transferase family 2 E3E15_05595 PF16363 GDP-mannose 4,6 dehydratase E3E15_05600 PF01370 NAD dependent epimerase/dehydratase family E3E15_05605 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E3E15_05610 PF16363 GDP-mannose 4,6 dehydratase E3E15_05615 PF00483 Nucleotidyl transferase E3E15_05620 PF01370 NAD dependent epimerase/dehydratase family E3E15_05625 PF16363 GDP-mannose 4,6 dehydratase E3E15_05630 PF00534 Glycosyl transferases group 1 E3E15_05640 PF02350 UDP-N-acetylglucosamine 2-epimerase E3E15_05655 PF08485 Polysaccharide biosynthesis protein C-terminal E3E15_05655 PF02719 Polysaccharide biosynthesis protein E3E15_05680 PF00270 DEAD/DEAH box helicase E3E15_05680 PF17191 RecG wedge domain E3E15_05680 PF13749 Putative ATP-dependent DNA helicase recG C-terminal E3E15_05685 PF02397 Bacterial sugar transferase E3E15_05695 PF02719 Polysaccharide biosynthesis protein E3E15_05700 PF00271 Helicase conserved C-terminal domain E3E15_05700 PF04408 Helicase associated domain (HA2) E3E15_05700 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold E3E15_05700 PF11898 Domain of unknown function (DUF3418) E3E15_05700 PF00270 DEAD/DEAH box helicase E3E15_05710 PF03971 Monomeric isocitrate dehydrogenase E3E15_05720 PF00588 SpoU rRNA Methylase family E3E15_05720 PF08032 RNA 2'-O ribose methyltransferase substrate binding E3E15_05725 PF01225 Mur ligase family, catalytic domain E3E15_05725 PF08245 Mur ligase middle domain E3E15_05725 PF02875 Mur ligase family, glutamate ligase domain E3E15_05735 PF00156 Phosphoribosyl transferase domain E3E15_05740 PF00149 Calcineurin-like phosphoesterase E3E15_05745 PF00872 Transposase, Mutator family E3E15_05750 PF02875 Mur ligase family, glutamate ligase domain E3E15_05750 PF01225 Mur ligase family, catalytic domain E3E15_05750 PF08245 Mur ligase middle domain E3E15_05765 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3E15_05765 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain E3E15_05770 PF01293 Phosphoenolpyruvate carboxykinase E3E15_05775 PF02801 Beta-ketoacyl synthase, C-terminal domain E3E15_05775 PF00109 Beta-ketoacyl synthase, N-terminal domain E3E15_05780 PF00550 Phosphopantetheine attachment site E3E15_05790 PF00698 Acyl transferase domain E3E15_05795 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E3E15_05795 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E3E15_05800 PF02504 Fatty acid synthesis protein E3E15_05805 PF01783 Ribosomal L32p protein family E3E15_05815 PF00456 Transketolase, thiamine diphosphate binding domain E3E15_05815 PF02780 Transketolase, C-terminal domain E3E15_05815 PF02779 Transketolase, pyrimidine binding domain E3E15_05820 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E3E15_05820 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E3E15_05825 PF00162 Phosphoglycerate kinase E3E15_05830 PF00224 Pyruvate kinase, barrel domain E3E15_05830 PF02887 Pyruvate kinase, alpha/beta domain E3E15_05835 PF01116 Fructose-bisphosphate aldolase class-II E3E15_05840 PF13525 Outer membrane lipoprotein E3E15_05845 PF01479 S4 domain E3E15_05845 PF00849 RNA pseudouridylate synthase E3E15_05850 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase E3E15_05855 PF02405 Permease MlaE E3E15_05860 PF00005 ABC transporter E3E15_05880 PF04452 RNA methyltransferase E3E15_05885 PF00854 POT family E3E15_05890 PF00854 POT family E3E15_05895 PF00501 AMP-binding enzyme E3E15_05895 PF13193 AMP-binding enzyme C-terminal domain E3E15_05900 PF07690 Major Facilitator Superfamily E3E15_05905 PF13533 Biotin-lipoyl like E3E15_05910 PF02321 Outer membrane efflux protein E3E15_05925 PF02540 NAD synthase E3E15_05930 PF00684 DnaJ central domain E3E15_05930 PF01556 DnaJ C terminal domain E3E15_05930 PF00226 DnaJ domain E3E15_05935 PF00012 Hsp70 protein E3E15_05940 PF01025 GrpE E3E15_05955 PF00572 Ribosomal protein L13 E3E15_05960 PF00380 Ribosomal protein S9/S16 E3E15_05975 PF01351 Ribonuclease HII E3E15_05980 PF00588 SpoU rRNA Methylase family E3E15_05990 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E3E15_06000 PF10396 GTP-binding protein TrmE N-terminus E3E15_06000 PF12631 MnmE helical domain E3E15_06000 PF01926 50S ribosome-binding GTPase E3E15_06030 PF01381 Helix-turn-helix E3E15_06035 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB E3E15_06040 PF00291 Pyridoxal-phosphate dependent enzyme E3E15_06045 PF02600 Disulfide bond formation protein DsbB E3E15_06100 PF05139 Erythromycin esterase E3E15_06100 PF00156 Phosphoribosyl transferase domain E3E15_06105 PF01738 Dienelactone hydrolase family E3E15_06105 PF00156 Phosphoribosyl transferase domain E3E15_06115 PF09334 tRNA synthetases class I (M) E3E15_06115 PF01588 Putative tRNA binding domain E3E15_06115 PF08264 Anticodon-binding domain of tRNA E3E15_06120 PF07690 Major Facilitator Superfamily E3E15_06125 PF01300 Telomere recombination E3E15_06130 PF04279 Intracellular septation protein A E3E15_06135 PF02685 Glucokinase E3E15_06140 PF01209 ubiE/COQ5 methyltransferase family E3E15_06150 PF03109 ABC1 family E3E15_06155 PF01230 HIT domain E3E15_06160 PF00156 Phosphoribosyl transferase domain E3E15_06165 PF13847 Methyltransferase domain E3E15_06175 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain E3E15_06175 PF01565 FAD binding domain E3E15_06180 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3E15_06185 PF01926 50S ribosome-binding GTPase E3E15_06185 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E3E15_06205 PF03949 Malic enzyme, NAD binding domain E3E15_06205 PF00390 Malic enzyme, N-terminal domain E3E15_06210 PF01687 Riboflavin kinase E3E15_06210 PF06574 FAD synthetase E3E15_06215 PF00133 tRNA synthetases class I (I, L, M and V) E3E15_06215 PF06827 Zinc finger found in FPG and IleRS E3E15_06215 PF08264 Anticodon-binding domain of tRNA E3E15_06220 PF01252 Signal peptidase (SPase) II E3E15_06240 PF01728 FtsJ-like methyltransferase E3E15_06250 PF02540 NAD synthase E3E15_06250 PF00117 Glutamine amidotransferase class-I E3E15_06250 PF00958 GMP synthase C terminal domain E3E15_06255 PF17762 HTH domain found in ParB protein E3E15_06255 PF02195 ParB-like nuclease domain E3E15_06260 PF13614 AAA domain E3E15_06265 PF13368 Topoisomerase C-terminal repeat E3E15_06265 PF01751 Toprim domain E3E15_06265 PF01131 DNA topoisomerase E3E15_06285 PF04430 Protein of unknown function (DUF498/DUF598) E3E15_06290 PF01432 Peptidase family M3 E3E15_06295 PF02021 Uncharacterised protein family UPF0102 E3E15_06310 PF17827 PrmC N-terminal domain E3E15_06310 PF13847 Methyltransferase domain E3E15_06315 PF00472 RF-1 domain E3E15_06315 PF03462 PCRF domain E3E15_06320 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain E3E15_06320 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain E3E15_06320 PF01488 Shikimate / quinate 5-dehydrogenase E3E15_06330 PF13360 PQQ-like domain E3E15_06335 PF07690 Major Facilitator Superfamily E3E15_06340 PF00204 DNA gyrase B E3E15_06340 PF01751 Toprim domain E3E15_06340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3E15_06340 PF00986 DNA gyrase B subunit, carboxyl terminus E3E15_06350 PF01510 N-acetylmuramoyl-L-alanine amidase E3E15_06365 PF00293 NUDIX domain E3E15_06370 PF14226 non-haem dioxygenase in morphine synthesis N-terminal E3E15_06370 PF03171 2OG-Fe(II) oxygenase superfamily E3E15_06375 PF00589 Phage integrase family E3E15_06375 PF02899 Phage integrase, N-terminal SAM-like domain E3E15_06380 PF01245 Ribosomal protein L19 E3E15_06385 PF01746 tRNA (Guanine-1)-methyltransferase E3E15_06390 PF05239 PRC-barrel domain E3E15_06390 PF01782 RimM N-terminal domain E3E15_06395 PF00886 Ribosomal protein S16 E3E15_06400 PF00438 S-adenosylmethionine synthetase, N-terminal domain E3E15_06400 PF02773 S-adenosylmethionine synthetase, C-terminal domain E3E15_06400 PF02772 S-adenosylmethionine synthetase, central domain E3E15_06410 PF00814 Glycoprotease family E3E15_06420 PF05000 RNA polymerase Rpb1, domain 4 E3E15_06420 PF04983 RNA polymerase Rpb1, domain 3 E3E15_06420 PF00623 RNA polymerase Rpb1, domain 2 E3E15_06420 PF04997 RNA polymerase Rpb1, domain 1 E3E15_06420 PF04998 RNA polymerase Rpb1, domain 5 E3E15_06425 PF10385 RNA polymerase beta subunit external 1 domain E3E15_06425 PF00562 RNA polymerase Rpb2, domain 6 E3E15_06425 PF04560 RNA polymerase Rpb2, domain 7 E3E15_06425 PF04563 RNA polymerase beta subunit E3E15_06425 PF04565 RNA polymerase Rpb2, domain 3 E3E15_06425 PF04561 RNA polymerase Rpb2, domain 2 E3E15_06430 PF00542 Ribosomal protein L7/L12 C-terminal domain E3E15_06430 PF16320 Ribosomal protein L7/L12 dimerisation domain E3E15_06435 PF00466 Ribosomal protein L10 E3E15_06440 PF00687 Ribosomal protein L1p/L10e family E3E15_06445 PF00298 Ribosomal protein L11, RNA binding domain E3E15_06445 PF03946 Ribosomal protein L11, N-terminal domain E3E15_06450 PF00467 KOW motif E3E15_06450 PF02357 Transcription termination factor nusG E3E15_06455 PF00584 SecE/Sec61-gamma subunits of protein translocation complex E3E15_06465 PF00009 Elongation factor Tu GTP binding domain E3E15_06465 PF03144 Elongation factor Tu domain 2 E3E15_06465 PF03143 Elongation factor Tu C-terminal domain E3E15_06495 PF00230 Major intrinsic protein E3E15_06500 PF16901 C-terminal domain of alpha-glycerophosphate oxidase E3E15_06500 PF01266 FAD dependent oxidoreductase E3E15_06505 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3E15_06505 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3E15_06515 PF00580 UvrD/REP helicase N-terminal domain E3E15_06515 PF13361 UvrD-like helicase C-terminal domain E3E15_06520 PF00448 SRP54-type protein, GTPase domain E3E15_06520 PF02881 SRP54-type protein, helical bundle domain E3E15_06530 PF16658 Class II release factor RF3, C-terminal domain E3E15_06530 PF00009 Elongation factor Tu GTP binding domain E3E15_06530 PF03144 Elongation factor Tu domain 2 E3E15_06535 PF02223 Thymidylate kinase E3E15_06540 PF07662 Na+ dependent nucleoside transporter C-terminus E3E15_06540 PF07670 Nucleoside recognition E3E15_06540 PF01773 Na+ dependent nucleoside transporter N-terminus E3E15_06545 PF01791 DeoC/LacD family aldolase E3E15_06550 PF01676 Metalloenzyme superfamily E3E15_06555 PF03309 Type III pantothenate kinase E3E15_06560 PF01612 3'-5' exonuclease E3E15_06560 PF00476 DNA polymerase family A E3E15_06560 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E3E15_06560 PF01367 5'-3' exonuclease, C-terminal SAM fold E3E15_06565 PF02606 Tetraacyldisaccharide-1-P 4'-kinase E3E15_06570 PF00005 ABC transporter E3E15_06570 PF00664 ABC transporter transmembrane region E3E15_06575 PF12627 Probable RNA and SrmB- binding site of polymerase A E3E15_06575 PF01743 Poly A polymerase head domain E3E15_06580 PF02600 Disulfide bond formation protein DsbB E3E15_06585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3E15_06590 PF00873 AcrB/AcrD/AcrF family E3E15_06620 PF03883 Peroxide stress protein YaaA E3E15_06625 PF02590 Predicted SPOUT methyltransferase E3E15_06640 PF02796 Helix-turn-helix domain of resolvase E3E15_06640 PF00239 Resolvase, N terminal domain E3E15_06650 PF05175 Methyltransferase small domain E3E15_06655 PF09190 DALR domain E3E15_06655 PF01406 tRNA synthetases class I (C) catalytic domain E3E15_06685 PF00474 Sodium:solute symporter family E3E15_06690 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded E3E15_06695 PF02129 X-Pro dipeptidyl-peptidase (S15 family) E3E15_06700 PF00324 Amino acid permease E3E15_06705 PF01569 PAP2 superfamily E3E15_06710 PF01580 FtsK/SpoIIIE family E3E15_06710 PF09397 Ftsk gamma domain E3E15_06710 PF17854 FtsK alpha domain E3E15_06710 PF13491 4TM region of DNA translocase FtsK/SpoIIIE E3E15_06715 PF03548 Outer membrane lipoprotein carrier protein LolA E3E15_06730 PF02386 Cation transport protein E3E15_06760 PF00872 Transposase, Mutator family E3E15_06775 PF00667 FAD binding domain E3E15_06775 PF00258 Flavodoxin E3E15_06775 PF00175 Oxidoreductase NAD-binding domain E3E15_06780 PF01197 Ribosomal protein L31 E3E15_06785 PF04262 Glutamate-cysteine ligase E3E15_06790 PF03023 Lipid II flippase MurJ E3E15_06800 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE E3E15_06805 PF08245 Mur ligase middle domain E3E15_06810 PF17848 Acetyl-coA carboxylase zinc finger domain E3E15_06810 PF01039 Carboxyl transferase domain E3E15_06815 PF00334 Nucleoside diphosphate kinase E3E15_06820 PF00117 Glutamine amidotransferase class-I E3E15_06820 PF06418 CTP synthase N-terminus E3E15_06830 PF00183 Hsp90 protein E3E15_06835 PF01196 Ribosomal protein L17 E3E15_06840 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E3E15_06840 PF01000 RNA polymerase Rpb3/RpoA insert domain E3E15_06840 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E3E15_06845 PF00163 Ribosomal protein S4/S9 N-terminal domain E3E15_06845 PF01479 S4 domain E3E15_06850 PF00411 Ribosomal protein S11 E3E15_06855 PF00416 Ribosomal protein S13/S18 E3E15_06860 PF00444 Ribosomal protein L36 E3E15_06865 PF00344 SecY translocase E3E15_06870 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A E3E15_06875 PF00327 Ribosomal protein L30p/L7e E3E15_06880 PF03719 Ribosomal protein S5, C-terminal domain E3E15_06880 PF00333 Ribosomal protein S5, N-terminal domain E3E15_06885 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast E3E15_06890 PF00347 Ribosomal protein L6 E3E15_06895 PF00410 Ribosomal protein S8 E3E15_06900 PF00253 Ribosomal protein S14p/S29e E3E15_06905 PF00673 ribosomal L5P family C-terminus E3E15_06905 PF00281 Ribosomal protein L5 E3E15_06910 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 E3E15_06915 PF00238 Ribosomal protein L14p/L23e E3E15_06920 PF00366 Ribosomal protein S17 E3E15_06925 PF00831 Ribosomal L29 protein E3E15_06930 PF00252 Ribosomal protein L16p/L10e E3E15_06935 PF00189 Ribosomal protein S3, C-terminal domain E3E15_06935 PF07650 KH domain E3E15_06940 PF00237 Ribosomal protein L22p/L17e E3E15_06945 PF00203 Ribosomal protein S19 E3E15_06950 PF03947 Ribosomal Proteins L2, C-terminal domain E3E15_06950 PF00181 Ribosomal Proteins L2, RNA binding domain E3E15_06955 PF00276 Ribosomal protein L23 E3E15_06960 PF00573 Ribosomal protein L4/L1 family E3E15_06965 PF00297 Ribosomal protein L3 E3E15_06970 PF00338 Ribosomal protein S10p/S20e E3E15_06975 PF00009 Elongation factor Tu GTP binding domain E3E15_06975 PF00679 Elongation factor G C-terminus E3E15_06975 PF03144 Elongation factor Tu domain 2 E3E15_06975 PF14492 Elongation Factor G, domain II E3E15_06975 PF03764 Elongation factor G, domain IV E3E15_06980 PF00177 Ribosomal protein S7p/S5e E3E15_06985 PF00164 Ribosomal protein S12/S23 E3E15_06990 PF01066 CDP-alcohol phosphatidyltransferase E3E15_06995 PF00692 dUTPase E3E15_07005 PF01255 Putative undecaprenyl diphosphate synthase E3E15_07010 PF01765 Ribosome recycling factor E3E15_07015 PF00696 Amino acid kinase family E3E15_07020 PF00889 Elongation factor TS E3E15_07025 PF00318 Ribosomal protein S2 E3E15_07030 PF00186 Dihydrofolate reductase E3E15_07035 PF07690 Major Facilitator Superfamily E3E15_07040 PF01654 Cytochrome bd terminal oxidase subunit I E3E15_07045 PF02322 Cytochrome bd terminal oxidase subunit II E3E15_07065 PF00872 Transposase, Mutator family E3E15_07090 PF18074 Primosomal protein N C-terminal domain E3E15_07090 PF17764 3′ DNA-binding domain (3′BD) E3E15_07090 PF00271 Helicase conserved C-terminal domain E3E15_07090 PF00270 DEAD/DEAH box helicase E3E15_07090 PF18319 PriA DNA helicase Cys-rich region (CRR) domain E3E15_07100 PF03631 Virulence factor BrkB E3E15_07105 PF03358 NADPH-dependent FMN reductase E3E15_07125 PF00005 ABC transporter E3E15_07125 PF08402 TOBE domain E3E15_07130 PF00950 ABC 3 transport family E3E15_07135 PF01494 FAD binding domain E3E15_07140 PF00156 Phosphoribosyl transferase domain E3E15_07145 PF00709 Adenylosuccinate synthetase E3E15_07150 PF01808 AICARFT/IMPCHase bienzyme E3E15_07150 PF02142 MGS-like domain E3E15_07185 PF12848 ABC transporter E3E15_07185 PF00005 ABC transporter E3E15_07190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3E15_07190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3E15_07195 PF00083 Sugar (and other) transporter E3E15_07195 PF08946 Osmosensory transporter coiled coil E3E15_07200 PF00581 Rhodanese-like domain E3E15_07205 PF02556 Preprotein translocase subunit SecB E3E15_07210 PF00154 recA bacterial DNA recombination protein E3E15_07220 PF00436 Single-strand binding protein family E3E15_07225 PF00872 Transposase, Mutator family E3E15_07235 PF00871 Acetokinase family E3E15_07240 PF01515 Phosphate acetyl/butaryl transferase E3E15_07240 PF07085 DRTGG domain E3E15_07245 PF00171 Aldehyde dehydrogenase family E3E15_07265 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3E15_07270 PF08245 Mur ligase middle domain E3E15_07270 PF02875 Mur ligase family, glutamate ligase domain E3E15_07270 PF01225 Mur ligase family, catalytic domain E3E15_07275 PF01488 Shikimate / quinate 5-dehydrogenase E3E15_07275 PF08501 Shikimate dehydrogenase substrate binding domain E3E15_07275 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E3E15_07320 PF00218 Indole-3-glycerol phosphate synthase E3E15_07320 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase E3E15_07325 PF01979 Amidohydrolase family E3E15_07330 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E3E15_07335 PF01180 Dihydroorotate dehydrogenase E3E15_07345 PF00872 Transposase, Mutator family E3E15_07420 PF02153 Prephenate dehydrogenase E3E15_07420 PF01817 Chorismate mutase type II E3E15_07425 PF02580 D-Tyr-tRNA(Tyr) deacylase E3E15_07440 PF00037 4Fe-4S binding domain E3E15_07440 PF11953 Domain of unknown function (DUF3470) E3E15_07455 PF03372 Endonuclease/Exonuclease/phosphatase family E3E15_07460 PF06965 Na+/H+ antiporter 1 E3E15_07465 PF00872 Transposase, Mutator family E3E15_07475 PF06965 Na+/H+ antiporter 1 E3E15_07475 PF01343 Peptidase family S49 E3E15_07485 PF01872 RibD C-terminal domain E3E15_07485 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E3E15_07490 PF00677 Lumazine binding domain E3E15_07495 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E3E15_07495 PF00925 GTP cyclohydrolase II E3E15_07500 PF00885 6,7-dimethyl-8-ribityllumazine synthase E3E15_07505 PF01327 Polypeptide deformylase E3E15_07520 PF08543 Phosphomethylpyrimidine kinase E3E15_07530 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD E3E15_07530 PF00132 Bacterial transferase hexapeptide (six repeats) E3E15_07540 PF01040 UbiA prenyltransferase family E3E15_07545 PF03626 Prokaryotic Cytochrome C oxidase subunit IV E3E15_07550 PF00510 Cytochrome c oxidase subunit III E3E15_07555 PF00115 Cytochrome C and Quinol oxidase polypeptide I E3E15_07560 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E3E15_07560 PF06481 COX Aromatic Rich Motif E3E15_07570 PF03840 Preprotein translocase SecG subunit E3E15_07575 PF00121 Triosephosphate isomerase E3E15_07580 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3E15_07580 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3E15_07580 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3E15_07580 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3E15_07585 PF00156 Phosphoribosyl transferase domain E3E15_07590 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3E15_07590 PF00364 Biotin-requiring enzyme E3E15_07590 PF02817 e3 binding domain E3E15_07595 PF16078 2-oxoglutarate dehydrogenase N-terminus E3E15_07595 PF02779 Transketolase, pyrimidine binding domain E3E15_07595 PF16870 2-oxoglutarate dehydrogenase C-terminal E3E15_07595 PF00676 Dehydrogenase E1 component E3E15_07600 PF13085 2Fe-2S iron-sulfur cluster binding domain E3E15_07605 PF00890 FAD binding domain E3E15_07605 PF02910 Fumarate reductase flavoprotein C-term E3E15_07610 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E3E15_07615 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E3E15_07620 PF00285 Citrate synthase, C-terminal domain E3E15_07625 PF07690 Major Facilitator Superfamily E3E15_07630 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E3E15_07630 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E3E15_07635 PF00462 Glutaredoxin E3E15_07645 PF01336 OB-fold nucleic acid binding domain E3E15_07645 PF00152 tRNA synthetases class II (D, K and N) E3E15_07655 PF00881 Nitroreductase family E3E15_07675 PF01384 Phosphate transporter family E3E15_07690 PF03746 LamB/YcsF family E3E15_07700 PF07690 Major Facilitator Superfamily E3E15_07705 PF00872 Transposase, Mutator family E3E15_07710 PF00582 Universal stress protein family E3E15_07715 PF06421 GTP-binding protein LepA C-terminus E3E15_07715 PF03144 Elongation factor Tu domain 2 E3E15_07715 PF00009 Elongation factor Tu GTP binding domain E3E15_07715 PF00679 Elongation factor G C-terminus E3E15_07725 PF07726 ATPase family associated with various cellular activities (AAA) E3E15_07725 PF17863 AAA lid domain E3E15_07730 PF01882 Protein of unknown function DUF58 E3E15_07745 PF00092 von Willebrand factor type A domain E3E15_07745 PF07584 Aerotolerance regulator N-terminal E3E15_07775 PF00133 tRNA synthetases class I (I, L, M and V) E3E15_07775 PF08264 Anticodon-binding domain of tRNA E3E15_07775 PF10458 Valyl tRNA synthetase tRNA binding arm E3E15_07780 PF00872 Transposase, Mutator family E3E15_07785 PF02885 Glycosyl transferase family, helical bundle domain E3E15_07785 PF00591 Glycosyl transferase family, a/b domain E3E15_07790 PF00117 Glutamine amidotransferase class-I E3E15_07795 PF04715 Anthranilate synthase component I, N terminal region E3E15_07795 PF00425 chorismate binding enzyme E3E15_07815 PF10150 Ribonuclease E/G family E3E15_07815 PF00575 S1 RNA binding domain