SD28_00005 PF01432 Peptidase family M3 SD28_00010 PF02021 Uncharacterised protein family UPF0102 SD28_00025 PF02222 ATP-grasp domain SD28_00030 PF00731 AIR carboxylase SD28_00035 PF00551 Formyl transferase SD28_00040 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SD28_00040 PF01259 SAICAR synthetase SD28_00040 PF02843 Phosphoribosylglycinamide synthetase, C domain SD28_00040 PF02844 Phosphoribosylglycinamide synthetase, N domain SD28_00045 PF00586 AIR synthase related protein, N-terminal domain SD28_00045 PF02769 AIR synthase related protein, C-terminal domain SD28_00050 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SD28_00050 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SD28_00055 PF00114 Pilin (bacterial filament) SD28_00055 PF07963 Prokaryotic N-terminal methylation motif SD28_00060 PF00114 Pilin (bacterial filament) SD28_00060 PF07963 Prokaryotic N-terminal methylation motif SD28_00065 PF01050 Mannose-6-phosphate isomerase SD28_00070 PF00080 Copper/zinc superoxide dismutase (SODC) SD28_00075 PF01264 Chorismate synthase SD28_00080 PF09335 SD28_00080 SD28_00090 PF13481 AAA domain SD28_00090 PF13541 Subunit ChlI of Mg-chelatase SD28_00095 PF02674 SD28_00095 SD28_00100 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SD28_00100 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SD28_00105 PF01022 Bacterial regulatory protein, arsR family SD28_00110 PF00122 E1-E2 ATPase SD28_00110 PF00702 haloacid dehalogenase-like hydrolase SD28_00115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SD28_00115 PF03466 LysR substrate binding domain SD28_00120 PF04011 LemA family SD28_00125 PF01435 Peptidase family M48 SD28_00135 PF01138 3' exoribonuclease family, domain 1 SD28_00135 PF03725 3' exoribonuclease family, domain 2 SD28_00140 PF04345 Chorismate lyase SD28_00145 PF01040 UbiA prenyltransferase family SD28_00150 PF04241 SD28_00150 SD28_00160 PF01925 SD28_00160 SD28_00165 PF08348 SD28_00165 SD28_00165 PF13309 SD28_00165 SD28_00170 PF12092 SD28_00170 SD28_00175 PF00919 Uncharacterized protein family UPF0004 SD28_00175 PF01938 TRAM domain SD28_00175 PF04055 Radical SAM superfamily SD28_00180 PF00691 OmpA family SD28_00190 PF07676 WD40-like Beta Propeller Repeat SD28_00200 PF02472 Biopolymer transport protein ExbD/TolR SD28_00205 PF01618 SD28_00205 SD28_00215 PF01066 CDP-alcohol phosphatidyltransferase SD28_00220 PF07736 Chorismate mutase type I SD28_00225 PF02401 LytB protein SD28_00230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SD28_00235 PF00400 WD domain, G-beta repeat SD28_00240 PF03703 SD28_00240 SD28_00245 PF00691 OmpA family SD28_00250 PF02481 DNA recombination-mediator protein A SD28_00255 PF04333 SD28_00255 SD28_00260 PF13489 Methyltransferase domain SD28_00270 PF13359 SD28_00270 SD28_00275 PF13613 SD28_00275 SD28_00280 PF11685 SD28_00280 SD28_00285 PF11685 SD28_00285 SD28_00295 PF13847 Methyltransferase domain SD28_00300 PF00472 RF-1 domain SD28_00300 PF03462 PCRF domain SD28_00305 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SD28_00305 PF01488 Shikimate / quinate 5-dehydrogenase SD28_00305 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SD28_00310 PF09976 Tetratricopeptide repeat SD28_00315 PF13360 PQQ-like domain SD28_00320 PF07690 Major Facilitator Superfamily SD28_00325 PF00204 DNA gyrase B SD28_00325 PF00986 DNA gyrase B subunit, carboxyl terminus SD28_00325 PF01751 Toprim domain SD28_00325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD28_00335 PF01510 N-acetylmuramoyl-L-alanine amidase SD28_00340 PF01569 PAP2 superfamily SD28_00345 PF00448 SRP54-type protein, GTPase domain SD28_00345 PF02881 SRP54-type protein, helical bundle domain SD28_00350 PF01476 LysM domain SD28_00355 PF00009 Elongation factor Tu GTP binding domain SD28_00355 PF03144 Elongation factor Tu domain 2 SD28_00355 PF16658 SD28_00355 SD28_00360 PF02223 Thymidylate kinase SD28_00365 PF01773 Na+ dependent nucleoside transporter N-terminus SD28_00365 PF07662 Na+ dependent nucleoside transporter C-terminus SD28_00370 PF01791 DeoC/LacD family aldolase SD28_00375 PF01676 Metalloenzyme superfamily SD28_00380 PF03309 Type III pantothenate kinase SD28_00385 PF00476 DNA polymerase family A SD28_00385 PF01367 5'-3' exonuclease, C-terminal SAM fold SD28_00385 PF01612 3'-5' exonuclease SD28_00385 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SD28_00390 PF01764 Lipase (class 3) SD28_00390 PF06594 SD28_00390 SD28_00400 PF04480 Protein of unknown function (DUF559) SD28_00410 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SD28_00415 PF00005 ABC transporter SD28_00415 PF00664 ABC transporter transmembrane region SD28_00420 PF01743 Poly A polymerase head domain SD28_00420 PF12627 Probable RNA and SrmB- binding site of polymerase A SD28_00425 PF02600 Disulfide bond formation protein DsbB SD28_00430 PF16576 SD28_00430 SD28_00435 PF00873 AcrB/AcrD/AcrF family SD28_00455 PF00892 EamA-like transporter family SD28_00460 PF07690 Major Facilitator Superfamily SD28_00465 PF04463 SD28_00465 SD28_00465 PF08349 SD28_00465 SD28_00470 PF02655 ATP-grasp domain SD28_00480 PF00512 His Kinase A (phospho-acceptor) domain SD28_00480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD28_00485 PF01370 NAD dependent epimerase/dehydratase family SD28_00485 PF08338 Domain of unknown function (DUF1731) SD28_00490 PF01654 SD28_00490 SD28_00495 PF02322 SD28_00495 SD28_00500 PF00437 Type II/IV secretion system protein SD28_00505 PF00330 Aconitase family (aconitate hydratase) SD28_00505 PF00694 Aconitase C-terminal domain SD28_00510 PF04261 Dyp-type peroxidase family SD28_00515 PF04138 SD28_00515 SD28_00520 PF04055 Radical SAM superfamily SD28_00520 PF06969 HemN C-terminal domain SD28_00525 PF00860 Permease family SD28_00530 PF03960 ArsC family SD28_00535 PF00293 NUDIX domain SD28_00535 PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal SD28_00540 PF05681 SD28_00540 SD28_00540 PF05683 Fumarase C-terminus SD28_00560 PF00270 DEAD/DEAH box helicase SD28_00560 PF00271 Helicase conserved C-terminal domain SD28_00560 PF17191 SD28_00560 SD28_00565 PF13627 SD28_00565 SD28_00570 PF00830 Ribosomal L28 family SD28_00575 PF00471 Ribosomal protein L33 SD28_00580 PF03775 Septum formation inhibitor MinC, C-terminal domain SD28_00580 PF05209 Septum formation inhibitor MinC, N-terminal domain SD28_00585 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SD28_00590 PF03776 Septum formation topological specificity factor MinE SD28_00595 PF00005 ABC transporter SD28_00600 PF02405 SD28_00600 SD28_00605 PF02470 SD28_00605 SD28_00615 PF00120 Glutamine synthetase, catalytic domain SD28_00615 PF03951 Glutamine synthetase, beta-Grasp domain SD28_00620 PF04960 Glutaminase SD28_00620 PF12796 Ankyrin repeats (3 copies) SD28_00625 PF06144 DNA polymerase III, delta subunit SD28_00630 PF08212 Lipocalin-like domain SD28_00635 PF03222 Tryptophan/tyrosine permease family SD28_00640 PF13516 Leucine Rich repeat SD28_00640 PF13855 Leucine rich repeat SD28_00650 PF13516 Leucine Rich repeat SD28_00655 PF01722 BolA-like protein SD28_00660 PF01740 STAS domain SD28_00665 PF05494 Toluene tolerance, Ttg2 SD28_00675 PF00749 tRNA synthetases class I (E and Q), catalytic domain SD28_00680 PF00400 WD domain, G-beta repeat SD28_00685 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SD28_00690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SD28_00690 PF02874 ATP synthase alpha/beta family, beta-barrel domain SD28_00695 PF00231 ATP synthase SD28_00700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SD28_00700 PF00306 ATP synthase alpha/beta chain, C terminal domain SD28_00700 PF02874 ATP synthase alpha/beta family, beta-barrel domain SD28_00705 PF00213 ATP synthase delta (OSCP) subunit SD28_00710 PF00430 ATP synthase B/B' CF(0) SD28_00715 PF00137 ATP synthase subunit C SD28_00720 PF00119 ATP synthase A chain SD28_00725 PF03899 SD28_00725 SD28_00730 PF07690 Major Facilitator Superfamily SD28_00735 PF00849 RNA pseudouridylate synthase SD28_00740 PF03969 AFG1-like ATPase SD28_00745 PF07690 Major Facilitator Superfamily SD28_00750 PF03129 Anticodon binding domain SD28_00750 PF13393 Histidyl-tRNA synthetase SD28_00755 PF02033 Ribosome-binding factor A SD28_00760 PF00009 Elongation factor Tu GTP binding domain SD28_00760 PF04760 Translation initiation factor IF-2, N-terminal region SD28_00760 PF11987 Translation-initiation factor 2 SD28_00765 PF00575 S1 RNA binding domain SD28_00765 PF08529 NusA N-terminal domain SD28_00765 PF13184 NusA-like KH domain SD28_00765 PF14520 Helix-hairpin-helix domain SD28_00770 PF02576 Uncharacterised BCR, YhbC family COG0779 SD28_00770 PF17384 SD28_00770 SD28_00780 PF01208 Uroporphyrinogen decarboxylase (URO-D) SD28_00785 PF01078 Magnesium chelatase, subunit ChlI SD28_00785 PF13335 SD28_00785 SD28_00785 PF13541 Subunit ChlI of Mg-chelatase SD28_00790 PF04380 SD28_00790 SD28_00795 PF05232 SD28_00795 SD28_00800 PF01040 UbiA prenyltransferase family SD28_00805 PF03626 SD28_00805 SD28_00810 PF00510 Cytochrome c oxidase subunit III SD28_00815 PF00115 Cytochrome C and Quinol oxidase polypeptide I SD28_00820 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SD28_00820 PF06481 COX Aromatic Rich Motif SD28_00830 PF03840 Preprotein translocase SecG subunit SD28_00835 PF00121 Triosephosphate isomerase SD28_00840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SD28_00840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SD28_00840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SD28_00840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SD28_00845 PF00156 Phosphoribosyl transferase domain SD28_00850 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SD28_00850 PF00364 Biotin-requiring enzyme SD28_00850 PF02817 e3 binding domain SD28_00855 PF00676 Dehydrogenase E1 component SD28_00855 PF02779 Transketolase, pyrimidine binding domain SD28_00855 PF16870 SD28_00855 SD28_00860 PF13085 2Fe-2S iron-sulfur cluster binding domain SD28_00860 PF13534 4Fe-4S dicluster domain SD28_00865 PF00890 FAD binding domain SD28_00865 PF02910 Fumarate reductase flavoprotein C-term SD28_00875 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SD28_00880 PF00285 Citrate synthase SD28_00885 PF07690 Major Facilitator Superfamily SD28_00890 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SD28_00890 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SD28_00895 PF00462 Glutaredoxin SD28_00900 PF00704 Glycosyl hydrolases family 18 SD28_00905 PF00152 tRNA synthetases class II (D, K and N) SD28_00905 PF01336 OB-fold nucleic acid binding domain SD28_00910 PF00472 RF-1 domain SD28_00910 PF03462 PCRF domain SD28_00915 PF00881 Nitroreductase family SD28_00935 PF01384 SD28_00935 SD28_00940 PF01865 Protein of unknown function DUF47 SD28_00945 PF02626 Allophanate hydrolase subunit 2 SD28_00950 PF03746 LamB/YcsF family SD28_00955 PF02682 Allophanate hydrolase subunit 1 SD28_00960 PF07690 Major Facilitator Superfamily SD28_00965 PF00582 Universal stress protein family SD28_00970 PF00009 Elongation factor Tu GTP binding domain SD28_00970 PF00679 Elongation factor G C-terminus SD28_00970 PF03144 Elongation factor Tu domain 2 SD28_00970 PF06421 GTP-binding protein LepA C-terminus SD28_00975 PF03054 tRNA methyl transferase SD28_00985 PF01327 Polypeptide deformylase SD28_00990 PF00885 6,7-dimethyl-8-ribityllumazine synthase SD28_00995 PF00925 GTP cyclohydrolase II SD28_00995 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SD28_01000 PF00677 Lumazine binding domain SD28_01005 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SD28_01005 PF01872 RibD C-terminal domain SD28_01015 PF01488 Shikimate / quinate 5-dehydrogenase SD28_01015 PF08501 Shikimate dehydrogenase substrate binding domain SD28_01020 PF01225 Mur ligase family, catalytic domain SD28_01020 PF02875 Mur ligase family, glutamate ligase domain SD28_01020 PF08245 Mur ligase middle domain SD28_01025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SD28_01030 PF09419 SD28_01030 SD28_01035 PF00415 Regulator of chromosome condensation (RCC1) repeat SD28_01040 PF00271 Helicase conserved C-terminal domain SD28_01040 PF04851 Type III restriction enzyme, res subunit SD28_01040 PF11907 SD28_01040 SD28_01040 PF13091 PLD-like domain SD28_01045 PF01515 Phosphate acetyl/butaryl transferase SD28_01045 PF07085 DRTGG domain SD28_01050 PF00871 Acetokinase family SD28_01055 PF00436 Single-strand binding protein family SD28_01060 PF02631 RecX family SD28_01070 PF02556 Preprotein translocase subunit SecB SD28_01075 PF00581 Rhodanese-like domain SD28_01080 PF03938 Outer membrane protein (OmpH-like) SD28_01085 PF01343 Peptidase family S49 SD28_01090 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin SD28_01130 PF01363 FYVE zinc finger SD28_01135 PF00218 Indole-3-glycerol phosphate synthase SD28_01135 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SD28_01140 PF01979 Amidohydrolase family SD28_01145 PF13520 Amino acid permease SD28_01150 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SD28_01155 PF01180 Dihydroorotate dehydrogenase SD28_01185 PF05591 SD28_01185 SD28_01190 PF05943 SD28_01190 SD28_01205 PF05936 SD28_01205 SD28_01220 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) SD28_01225 PF14107 SD28_01225 SD28_01235 PF02153 Prephenate dehydrogenase SD28_01240 PF02580 D-Tyr-tRNA(Tyr) deacylase SD28_01255 PF00037 4Fe-4S binding domain SD28_01255 PF11953 Domain of unknown function (DUF3470) SD28_01260 PF01553 Acyltransferase SD28_01265 PF01553 Acyltransferase SD28_01270 PF03372 Endonuclease/Exonuclease/phosphatase family SD28_01275 PF06965 Na+/H+ antiporter 1 SD28_01280 PF07690 Major Facilitator Superfamily SD28_01290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SD28_01290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SD28_01295 PF00005 ABC transporter SD28_01295 PF12848 ABC transporter SD28_01305 PF00591 Glycosyl transferase family, a/b domain SD28_01305 PF02885 Glycosyl transferase family, helical bundle domain SD28_01310 PF00117 Glutamine amidotransferase class-I SD28_01315 PF00425 chorismate binding enzyme SD28_01315 PF04715 Anthranilate synthase component I, N terminal region SD28_01330 PF00575 S1 RNA binding domain SD28_01330 PF10150 Ribonuclease E/G family SD28_01335 PF00308 Bacterial dnaA protein SD28_01335 PF08299 Bacterial dnaA protein helix-turn-helix SD28_01335 PF11638 DnaA N-terminal domain SD28_01340 PF00712 DNA polymerase III beta subunit, N-terminal domain SD28_01340 PF02767 DNA polymerase III beta subunit, central domain SD28_01340 PF02768 DNA polymerase III beta subunit, C-terminal domain SD28_01345 PF00704 Glycosyl hydrolases family 18 SD28_01345 PF02839 Carbohydrate binding domain SD28_01350 PF13698 SD28_01350 SD28_01355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SD28_01355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SD28_01360 PF02142 MGS-like domain SD28_01360 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SD28_01360 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SD28_01365 PF00117 Glutamine amidotransferase class-I SD28_01365 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SD28_01370 PF13508 Acetyltransferase (GNAT) domain SD28_01375 PF00657 GDSL-like Lipase/Acylhydrolase SD28_01380 PF00773 RNB domain SD28_01385 PF02230 Phospholipase/Carboxylesterase SD28_01390 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SD28_01390 PF03900 Porphobilinogen deaminase, C-terminal domain SD28_01395 PF02537 SD28_01395 SD28_01405 PF00528 Binding-protein-dependent transport system inner membrane component SD28_01410 PF00005 ABC transporter SD28_01410 PF09821 SD28_01410 SD28_01415 PF12097 SD28_01415 SD28_01420 PF00999 Sodium/hydrogen exchanger family SD28_01425 PF00132 Bacterial transferase hexapeptide (six repeats) SD28_01430 PF03550 Outer membrane lipoprotein LolB SD28_01435 PF00288 GHMP kinases N terminal domain SD28_01445 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family SD28_01450 PF02325 SD28_01450 SD28_01455 PF02594 Uncharacterised ACR, YggU family COG1872 SD28_01460 PF13673 Acetyltransferase (GNAT) domain SD28_01465 PF08443 RimK-like ATP-grasp domain SD28_01465 PF14401 SD28_01465 SD28_01470 PF03772 SD28_01470 SD28_01470 PF13567 SD28_01470 SD28_01475 PF06912 SD28_01475 SD28_01495 PF12092 SD28_01495 SD28_01500 PF12092 SD28_01500 SD28_01535 PF03222 Tryptophan/tyrosine permease family SD28_01545 PF01018 GTP1/OBG SD28_01545 PF01926 50S ribosome-binding GTPase SD28_01550 PF13520 Amino acid permease SD28_01555 PF00005 ABC transporter SD28_01555 PF06472 SD28_01555 SD28_01560 PF00152 tRNA synthetases class II (D, K and N) SD28_01560 PF01336 OB-fold nucleic acid binding domain SD28_01560 PF02938 GAD domain SD28_01565 PF01373 Glycosyl hydrolase family 14 SD28_01570 PF13546 SD28_01570 SD28_01575 PF00391 PEP-utilising enzyme, mobile domain SD28_01575 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SD28_01575 PF02896 PEP-utilising enzyme, TIM barrel domain SD28_01580 PF02421 Ferrous iron transport protein B SD28_01580 PF07664 SD28_01580 SD28_01580 PF07670 Nucleoside recognition SD28_01585 PF00929 Exonuclease SD28_01590 PF01132 Elongation factor P (EF-P) OB domain SD28_01590 PF08207 Elongation factor P (EF-P) KOW-like domain SD28_01590 PF09285 Elongation factor P, C-terminal SD28_01595 PF07963 Prokaryotic N-terminal methylation motif SD28_01595 PF16732 SD28_01595 SD28_01600 PF03279 SD28_01600 SD28_01605 PF03279 SD28_01605 SD28_01610 PF02096 60Kd inner membrane protein SD28_01610 PF14849 YidC periplasmic domain SD28_01615 PF00825 Ribonuclease P SD28_01620 PF00468 Ribosomal protein L34 SD28_01625 PF03222 Tryptophan/tyrosine permease family SD28_01630 PF02527 rRNA small subunit methyltransferase G SD28_01635 PF01168 Alanine racemase, N-terminal domain SD28_01645 PF13580 SIS domain SD28_01650 PF04355 SmpA / OmlA family SD28_01655 PF01649 Ribosomal protein S20 SD28_01660 PF00291 Pyridoxal-phosphate dependent enzyme SD28_01665 PF00290 Tryptophan synthase alpha chain SD28_01675 PF00004 ATPase family associated with various cellular activities (AAA) SD28_01675 PF02861 Clp amino terminal domain SD28_01675 PF07724 AAA domain (Cdc48 subfamily) SD28_01675 PF10431 C-terminal, D2-small domain, of ClpB protein SD28_01700 PF10282 Lactonase, 7-bladed beta-propeller SD28_01705 PF01553 Acyltransferase SD28_01715 PF01300 Telomere recombination SD28_01720 PF00575 S1 RNA binding domain SD28_01725 PF14437 SD28_01725 SD28_01730 PF01820 D-ala D-ala ligase N-terminus SD28_01730 PF07478 D-ala D-ala ligase C-terminus SD28_01735 PF03799 Cell division protein FtsQ SD28_01735 PF08478 POTRA domain, FtsQ-type SD28_01740 PF02491 SHS2 domain inserted in FTSA SD28_01740 PF14450 Cell division protein FtsA SD28_01745 PF00091 Tubulin/FtsZ family, GTPase domain SD28_01745 PF12327 FtsZ family, C-terminal domain SD28_01750 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SD28_01755 PF12169 DNA polymerase III subunits gamma and tau domain III SD28_01755 PF12170 DNA polymerase III tau subunit V interacting with alpha SD28_01755 PF13177 DNA polymerase III, delta subunit SD28_01765 PF00182 Chitinase class I SD28_01770 PF03600 Citrate transporter SD28_01775 PF07690 Major Facilitator Superfamily SD28_01790 PF01136 SD28_01790 SD28_01790 PF16325 SD28_01790 SD28_01795 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) SD28_01800 PF02321 Outer membrane efflux protein SD28_01805 PF01648 4'-phosphopantetheinyl transferase superfamily SD28_01810 PF00156 Phosphoribosyl transferase domain SD28_01810 PF13522 Glutamine amidotransferase domain SD28_01815 PF02769 AIR synthase related protein, C-terminal domain SD28_01815 PF13507 CobB/CobQ-like glutamine amidotransferase domain SD28_01820 PF00206 Lyase SD28_01830 PF13437 HlyD family secretion protein SD28_01830 PF13533 Biotin-lipoyl like SD28_01835 PF02686 Glu-tRNAGln amidotransferase C subunit SD28_01840 PF01425 Amidase SD28_01845 PF02637 GatB domain SD28_01845 PF02934 GatB/GatE catalytic domain SD28_01855 PF13000 SD28_01855 SD28_01865 PF04183 IucA / IucC family SD28_01865 PF06276 Ferric iron reductase FhuF-like transporter SD28_01865 PF13523 Acetyltransferase (GNAT) domain SD28_01870 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) SD28_01875 PF04183 IucA / IucC family SD28_01875 PF06276 Ferric iron reductase FhuF-like transporter SD28_01880 PF00282 Pyridoxal-dependent decarboxylase conserved domain SD28_01885 PF00202 Aminotransferase class-III SD28_01890 PF00696 Amino acid kinase family SD28_01895 PF01475 Ferric uptake regulator family SD28_01900 PF05593 SD28_01900 SD28_01920 PF15569 SD28_01920 SD28_01940 PF06769 Plasmid encoded toxin Txe SD28_01945 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system SD28_01950 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SD28_01950 PF08388 SD28_01950 SD28_01955 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SD28_01955 PF08388 SD28_01955 SD28_01960 PF00071 Ras family SD28_01960 PF13639 Ring finger domain SD28_01965 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SD28_01970 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SD28_01975 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SD28_01980 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SD28_01985 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin SD28_01990 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SD28_01990 PF10531 SLBB domain SD28_01990 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SD28_01995 PF00384 Molybdopterin oxidoreductase SD28_01995 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SD28_01995 PF13510 2Fe-2S iron-sulfur cluster binding domain SD28_02000 PF00146 NADH dehydrogenase SD28_02005 PF12838 4Fe-4S dicluster domain SD28_02010 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SD28_02015 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SD28_02020 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains SD28_02020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SD28_02025 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains SD28_02030 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains SD28_02045 PF00132 Bacterial transferase hexapeptide (six repeats) SD28_02045 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SD28_02055 PF08543 Phosphomethylpyrimidine kinase SD28_02060 PF12092 SD28_02060 SD28_02065 PF07726 ATPase family associated with various cellular activities (AAA) SD28_02070 PF01882 SD28_02070 SD28_02075 PF14316 SD28_02075 SD28_02080 PF00092 von Willebrand factor type A domain SD28_02085 PF13519 von Willebrand factor type A domain SD28_02090 PF00515 Tetratricopeptide repeat SD28_02095 PF13584 SD28_02095 SD28_02105 PF04364 DNA polymerase III chi subunit, HolC SD28_02110 PF05982 SD28_02110 SD28_02115 PF00133 tRNA synthetases class I (I, L, M and V) SD28_02115 PF08264 Anticodon-binding domain of tRNA SD28_02115 PF10458 Valyl tRNA synthetase tRNA binding arm SD28_02130 PF01808 AICARFT/IMPCHase bienzyme SD28_02130 PF02142 MGS-like domain SD28_02140 PF00709 Adenylosuccinate synthetase SD28_02145 PF00156 Phosphoribosyl transferase domain SD28_02155 PF01494 FAD binding domain SD28_02160 PF00950 SD28_02160 SD28_02165 PF00005 ABC transporter SD28_02170 PF01297 Periplasmic solute binding protein family SD28_02175 PF07690 Major Facilitator Superfamily SD28_02185 PF03358 NADPH-dependent FMN reductase SD28_02190 PF03631 SD28_02190 SD28_02195 PF04973 SD28_02195 SD28_02200 PF00270 DEAD/DEAH box helicase SD28_02200 PF00271 Helicase conserved C-terminal domain SD28_02225 PF02322 SD28_02225 SD28_02230 PF01654 SD28_02230 SD28_02235 PF07690 Major Facilitator Superfamily SD28_02240 PF00186 Dihydrofolate reductase SD28_02250 PF00318 Ribosomal protein S2 SD28_02255 PF00889 Elongation factor TS SD28_02260 PF00696 Amino acid kinase family SD28_02265 PF01765 Ribosome recycling factor SD28_02270 PF01255 Putative undecaprenyl diphosphate synthase SD28_02275 PF01148 Cytidylyltransferase family SD28_02280 PF00692 dUTPase SD28_02285 PF01066 CDP-alcohol phosphatidyltransferase SD28_02290 PF00164 Ribosomal protein S12/S23 SD28_02295 PF00177 Ribosomal protein S7p/S5e SD28_02300 PF00009 Elongation factor Tu GTP binding domain SD28_02300 PF00679 Elongation factor G C-terminus SD28_02300 PF03144 Elongation factor Tu domain 2 SD28_02300 PF03764 Elongation factor G, domain IV SD28_02300 PF14492 Elongation Factor G, domain II SD28_02305 PF00338 Ribosomal protein S10p/S20e SD28_02310 PF00297 Ribosomal protein L3 SD28_02315 PF00573 Ribosomal protein L4/L1 family SD28_02320 PF00276 Ribosomal protein L23 SD28_02325 PF00181 Ribosomal Proteins L2, RNA binding domain SD28_02325 PF03947 Ribosomal Proteins L2, C-terminal domain SD28_02330 PF00203 Ribosomal protein S19 SD28_02335 PF00237 Ribosomal protein L22p/L17e SD28_02340 PF00189 Ribosomal protein S3, C-terminal domain SD28_02340 PF07650 KH domain SD28_02345 PF00252 Ribosomal protein L16p/L10e SD28_02350 PF00831 Ribosomal L29 protein SD28_02355 PF00366 Ribosomal protein S17 SD28_02360 PF00238 Ribosomal protein L14p/L23e SD28_02365 PF17136 SD28_02365 SD28_02370 PF00281 Ribosomal protein L5 SD28_02370 PF00673 ribosomal L5P family C-terminus SD28_02375 PF00253 Ribosomal protein S14p/S29e SD28_02380 PF00410 Ribosomal protein S8 SD28_02385 PF00347 Ribosomal protein L6 SD28_02390 PF00861 Ribosomal L18p/L5e family SD28_02395 PF00333 Ribosomal protein S5, N-terminal domain SD28_02395 PF03719 Ribosomal protein S5, C-terminal domain SD28_02400 PF00327 Ribosomal protein L30p/L7e SD28_02405 PF00828 Ribosomal protein L18e/L15 SD28_02410 PF00344 SecY translocase SD28_02415 PF00444 Ribosomal protein L36 SD28_02420 PF00416 Ribosomal protein S13/S18 SD28_02425 PF00411 Ribosomal protein S11 SD28_02430 PF00163 Ribosomal protein S4/S9 N-terminal domain SD28_02430 PF01479 S4 domain SD28_02435 PF01000 RNA polymerase Rpb3/RpoA insert domain SD28_02435 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SD28_02435 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SD28_02440 PF01196 Ribosomal protein L17 SD28_02445 PF00183 Hsp90 protein SD28_02445 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD28_02450 PF00117 Glutamine amidotransferase class-I SD28_02450 PF06418 CTP synthase N-terminus SD28_02455 PF00334 Nucleoside diphosphate kinase SD28_02460 PF01039 Carboxyl transferase domain SD28_02465 PF08245 Mur ligase middle domain SD28_02470 PF02367 Uncharacterised P-loop hydrolase UPF0079 SD28_02475 PF08238 Sel1 repeat SD28_02480 PF03023 SD28_02480 SD28_02485 PF04262 Glutamate-cysteine ligase SD28_02490 PF01197 Ribosomal protein L31 SD28_02495 PF00175 Oxidoreductase NAD-binding domain SD28_02495 PF00970 Oxidoreductase FAD-binding domain SD28_02505 PF01145 SPFH domain / Band 7 family SD28_02515 PF00580 UvrD/REP helicase N-terminal domain SD28_02515 PF13361 UvrD-like helicase C-terminal domain SD28_02520 PF07690 Major Facilitator Superfamily SD28_02525 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SD28_02525 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SD28_02530 PF01266 FAD dependent oxidoreductase SD28_02530 PF16901 SD28_02530 SD28_02535 PF00230 Major intrinsic protein SD28_02545 PF00924 Mechanosensitive ion channel SD28_02565 PF00009 Elongation factor Tu GTP binding domain SD28_02565 PF03143 Elongation factor Tu C-terminal domain SD28_02565 PF03144 Elongation factor Tu domain 2 SD28_02575 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SD28_02580 PF00467 KOW motif SD28_02580 PF02357 Transcription termination factor nusG SD28_02585 PF00298 Ribosomal protein L11, RNA binding domain SD28_02585 PF03946 Ribosomal protein L11, N-terminal domain SD28_02590 PF00687 Ribosomal protein L1p/L10e family SD28_02595 PF00466 Ribosomal protein L10 SD28_02600 PF00542 Ribosomal protein L7/L12 C-terminal domain SD28_02600 PF16320 SD28_02600 SD28_02605 PF00562 RNA polymerase Rpb2, domain 6 SD28_02605 PF04560 RNA polymerase Rpb2, domain 7 SD28_02605 PF04561 RNA polymerase Rpb2, domain 2 SD28_02605 PF04563 RNA polymerase beta subunit SD28_02605 PF04565 RNA polymerase Rpb2, domain 3 SD28_02605 PF10385 RNA polymerase beta subunit external 1 domain SD28_02610 PF00623 RNA polymerase Rpb1, domain 2 SD28_02610 PF04983 RNA polymerase Rpb1, domain 3 SD28_02610 PF04997 RNA polymerase Rpb1, domain 1 SD28_02610 PF04998 RNA polymerase Rpb1, domain 5 SD28_02610 PF05000 RNA polymerase Rpb1, domain 4 SD28_02615 PF06305 SD28_02615 SD28_02620 PF00814 Glycoprotease family SD28_02625 PF00487 SD28_02625 SD28_02630 PF00438 S-adenosylmethionine synthetase, N-terminal domain SD28_02630 PF02772 S-adenosylmethionine synthetase, central domain SD28_02630 PF02773 S-adenosylmethionine synthetase, C-terminal domain SD28_02635 PF00886 Ribosomal protein S16 SD28_02640 PF01782 RimM N-terminal domain SD28_02640 PF05239 PRC-barrel domain SD28_02650 PF01245 Ribosomal protein L19 SD28_02655 PF00589 Phage integrase family SD28_02655 PF02899 Phage integrase, N-terminal SAM-like domain SD28_02660 PF03171 2OG-Fe(II) oxygenase superfamily SD28_02665 PF00293 NUDIX domain SD28_02685 PF01066 CDP-alcohol phosphatidyltransferase SD28_02690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD28_02690 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD28_02695 PF09335 SD28_02695 SD28_02700 PF00704 Glycosyl hydrolases family 18 SD28_02700 PF02839 Carbohydrate binding domain SD28_02710 PF04352 ProQ/FINO family SD28_02720 PF02386 Cation transport protein SD28_02735 PF03548 Outer membrane lipoprotein carrier protein LolA SD28_02740 PF01580 FtsK/SpoIIIE family SD28_02740 PF09397 Ftsk gamma domain SD28_02740 PF13491 SD28_02740 SD28_02745 PF01569 PAP2 superfamily SD28_02750 PF01118 Semialdehyde dehydrogenase, NAD binding domain SD28_02750 PF02774 Semialdehyde dehydrogenase, dimerisation domain SD28_02760 PF00324 Amino acid permease SD28_02765 PF12146 Putative lysophospholipase SD28_02770 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SD28_02775 PF00474 Sodium:solute symporter family SD28_02780 PF13632 Glycosyl transferase family group 2 SD28_02805 PF12678 RING-H2 zinc finger SD28_02805 PF13639 Ring finger domain SD28_02810 PF01406 tRNA synthetases class I (C) catalytic domain SD28_02810 PF09190 DALR domain SD28_02815 PF05175 Methyltransferase small domain SD28_02825 PF00182 Chitinase class I SD28_02830 PF02590 Predicted SPOUT methyltransferase SD28_02835 PF03883 SD28_02835 SD28_02850 PF04116 SD28_02850 SD28_02860 PF01026 TatD related DNase SD28_02870 PF00497 Bacterial extracellular solute-binding proteins, family 3 SD28_02875 PF07883 Cupin domain SD28_02880 PF01925 SD28_02880 SD28_02885 PF00005 ABC transporter SD28_02890 PF01061 SD28_02890 SD28_02895 PF00535 Glycosyl transferase family 2 SD28_02900 PF01513 ATP-NAD kinase SD28_02905 PF13509 S1 domain SD28_02910 PF01810 SD28_02910 SD28_02915 PF02390 Putative methyltransferase SD28_02925 PF00583 Acetyltransferase (GNAT) family SD28_02930 PF00443 Ubiquitin carboxyl-terminal hydrolase SD28_02935 PF01022 Bacterial regulatory protein, arsR family SD28_02940 PF00581 Rhodanese-like domain SD28_02940 PF11127 Protein of unknown function (DUF2892) SD28_02945 PF00753 Metallo-beta-lactamase superfamily SD28_02950 PF13640 2OG-Fe(II) oxygenase superfamily SD28_02955 PF03692 SD28_02955 SD28_02960 PF01029 NusB family SD28_02965 PF00795 Carbon-nitrogen hydrolase SD28_02970 PF00155 Aminotransferase class I and II SD28_02975 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SD28_02975 PF03129 Anticodon binding domain SD28_02975 PF04073 Aminoacyl-tRNA editing domain SD28_02990 PF12796 Ankyrin repeats (3 copies) SD28_03005 PF02657 Fe-S metabolism associated domain SD28_03010 PF02602 Uroporphyrinogen-III synthase HemD SD28_03025 PF00753 Metallo-beta-lactamase superfamily SD28_03025 PF16123 SD28_03025 SD28_03030 PF05036 Sporulation related domain SD28_03035 PF04023 FeoA domain SD28_03060 PF13546 SD28_03060 SD28_03070 PF09827 CRISPR associated protein Cas2 SD28_03095 PF15781 SD28_03095 SD28_03100 PF11903 SD28_03100 SD28_03105 PF00533 BRCA1 C Terminus (BRCT) domain SD28_03105 PF01653 NAD-dependent DNA ligase adenylation domain SD28_03105 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SD28_03105 PF03120 NAD-dependent DNA ligase OB-fold domain SD28_03105 PF12826 Helix-hairpin-helix motif SD28_03110 PF05708 Orthopoxvirus protein of unknown function (DUF830) SD28_03115 PF04257 Exodeoxyribonuclease V, gamma subunit SD28_03130 PF04445 Putative SAM-dependent methyltransferase SD28_03135 PF00589 Phage integrase family SD28_03135 PF02899 Phage integrase, N-terminal SAM-like domain SD28_03140 PF03222 Tryptophan/tyrosine permease family SD28_03145 PF02556 Preprotein translocase subunit SecB SD28_03150 PF00488 MutS domain V SD28_03150 PF01624 MutS domain I SD28_03150 PF05188 MutS domain II SD28_03150 PF05190 MutS family domain IV SD28_03150 PF05192 MutS domain III SD28_03155 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SD28_03165 PF07963 Prokaryotic N-terminal methylation motif SD28_03175 PF13580 SIS domain SD28_03185 PF00999 Sodium/hydrogen exchanger family SD28_03195 PF00579 tRNA synthetases class I (W and Y) SD28_03210 PF01121 Dephospho-CoA kinase SD28_03215 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase SD28_03220 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SD28_03220 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SD28_03220 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SD28_03220 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SD28_03225 PF00456 Transketolase, thiamine diphosphate binding domain SD28_03230 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SD28_03230 PF00364 Biotin-requiring enzyme SD28_03230 PF02817 e3 binding domain SD28_03235 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD28_03235 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD28_03240 PF00196 Bacterial regulatory proteins, luxR family SD28_03250 PF01242 6-pyruvoyl tetrahydropterin synthase SD28_03255 PF00106 short chain dehydrogenase SD28_03265 PF01227 GTP cyclohydrolase I SD28_03270 PF13535 ATP-grasp domain SD28_03275 PF00892 EamA-like transporter family SD28_03285 PF07690 Major Facilitator Superfamily SD28_03290 PF00155 Aminotransferase class I and II SD28_03310 PF03737 Demethylmenaquinone methyltransferase SD28_03320 PF07690 Major Facilitator Superfamily SD28_03345 PF03167 Uracil DNA glycosylase superfamily SD28_03350 PF00521 DNA gyrase/topoisomerase IV, subunit A SD28_03350 PF03989 DNA gyrase C-terminal domain, beta-propeller SD28_03355 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SD28_03355 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal SD28_03355 PF13288 DXP reductoisomerase C-terminal domain SD28_03360 PF01103 Surface antigen SD28_03360 PF07244 Surface antigen variable number repeat SD28_03365 PF03938 Outer membrane protein (OmpH-like) SD28_03370 PF00132 Bacterial transferase hexapeptide (six repeats) SD28_03370 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SD28_03375 PF07977 FabA-like domain SD28_03380 PF00132 Bacterial transferase hexapeptide (six repeats) SD28_03380 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SD28_03385 PF02684 SD28_03385 SD28_03390 PF04354 ZipA, C-terminal FtsZ-binding domain SD28_03395 PF03932 CutC family SD28_03400 PF00549 CoA-ligase SD28_03400 PF02629 CoA binding domain SD28_03405 PF00549 CoA-ligase SD28_03405 PF08442 ATP-grasp domain SD28_03415 PF01207 Dihydrouridine synthase (Dus) SD28_03425 PF00204 DNA gyrase B SD28_03425 PF00986 DNA gyrase B subunit, carboxyl terminus SD28_03425 PF01751 Toprim domain SD28_03425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD28_03430 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SD28_03430 PF06827 Zinc finger found in FPG and IleRS SD28_03430 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SD28_03435 PF00501 AMP-binding enzyme SD28_03440 PF01795 MraW methylase family SD28_03445 PF04999 SD28_03445 SD28_03450 PF00905 Penicillin binding protein transpeptidase domain SD28_03450 PF03717 Penicillin-binding Protein dimerisation domain SD28_03455 PF00312 Ribosomal protein S15 SD28_03460 PF00013 KH domain SD28_03460 PF00575 S1 RNA binding domain SD28_03460 PF01138 3' exoribonuclease family, domain 1 SD28_03460 PF03725 3' exoribonuclease family, domain 2 SD28_03460 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SD28_03465 PF01521 Iron-sulphur cluster biosynthesis SD28_03470 PF00793 DAHP synthetase I family SD28_03475 PF00485 Phosphoribulokinase / Uridine kinase family SD28_03480 PF01192 RNA polymerase Rpb6 SD28_03490 PF05958 tRNA (Uracil-5-)-methyltransferase SD28_03500 PF04973 SD28_03500 SD28_03505 PF07690 Major Facilitator Superfamily SD28_03510 PF00113 Enolase, C-terminal TIM barrel domain SD28_03510 PF03952 Enolase, N-terminal domain SD28_03515 PF04977 Septum formation initiator SD28_03520 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SD28_03525 PF03222 Tryptophan/tyrosine permease family SD28_03530 PF00107 Zinc-binding dehydrogenase SD28_03530 PF08240 Alcohol dehydrogenase GroES-like domain SD28_03535 PF00155 Aminotransferase class I and II SD28_03540 PF02839 Carbohydrate binding domain SD28_03545 PF02839 Carbohydrate binding domain SD28_03580 PF01029 NusB family SD28_03580 PF01189 NOL1/NOP2/sun family SD28_03585 PF00459 Inositol monophosphatase family SD28_03590 PF03601 SD28_03590 SD28_03595 PF07690 Major Facilitator Superfamily SD28_03610 PF00482 Type II secretion system (T2SS), protein F SD28_03615 PF00437 Type II/IV secretion system protein SD28_03615 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SD28_03620 PF03009 Glycerophosphoryl diester phosphodiesterase family SD28_03625 PF00994 Probable molybdopterin binding domain SD28_03630 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SD28_03630 PF02875 Mur ligase family, glutamate ligase domain SD28_03630 PF08245 Mur ligase middle domain SD28_03635 PF08245 Mur ligase middle domain SD28_03645 PF02542 YgbB family SD28_03650 PF00581 Rhodanese-like domain SD28_03655 PF00528 Binding-protein-dependent transport system inner membrane component SD28_03655 PF03180 NLPA lipoprotein SD28_03660 PF00005 ABC transporter SD28_03660 PF09383 NIL domain SD28_03665 PF02660 SD28_03665 SD28_03670 PF00082 Subtilase family SD28_03680 PF01702 Queuine tRNA-ribosyltransferase SD28_03705 PF02699 Preprotein translocase subunit SD28_03710 PF02355 Protein export membrane protein SD28_03710 PF07549 SecD/SecF GG Motif SD28_03710 PF13721 SecD export protein N-terminal TM region SD28_03715 PF02355 Protein export membrane protein SD28_03715 PF07549 SecD/SecF GG Motif SD28_03725 PF04542 Sigma-70 region 2 SD28_03725 PF04545 Sigma-70, region 4 SD28_03730 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SD28_03740 PF00075 RNase H SD28_03745 PF00710 Asparaginase SD28_03750 PF00484 Carbonic anhydrase SD28_03760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SD28_03760 PF05697 Bacterial trigger factor protein (TF) SD28_03760 PF05698 Bacterial trigger factor protein (TF) C-terminus SD28_03765 PF00574 Clp protease SD28_03770 PF06689 ClpX C4-type zinc finger SD28_03770 PF07724 AAA domain (Cdc48 subfamily) SD28_03770 PF10431 C-terminal, D2-small domain, of ClpB protein SD28_03775 PF00004 ATPase family associated with various cellular activities (AAA) SD28_03775 PF02190 ATP-dependent protease La (LON) domain SD28_03775 PF05362 Lon protease (S16) C-terminal proteolytic domain SD28_03780 PF00216 Bacterial DNA-binding protein SD28_03785 PF13624 SurA N-terminal domain SD28_03790 PF01715 IPP transferase SD28_03810 PF17209 SD28_03810 SD28_03815 PF01926 50S ribosome-binding GTPase SD28_03815 PF13167 SD28_03815 SD28_03815 PF16360 SD28_03815 SD28_03820 PF01145 SPFH domain / Band 7 family SD28_03825 PF01145 SPFH domain / Band 7 family SD28_03830 PF01451 Low molecular weight phosphotyrosine protein phosphatase SD28_03835 PF01926 50S ribosome-binding GTPase SD28_03840 PF02592 SD28_03840 SD28_03845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SD28_03860 PF03641 Possible lysine decarboxylase SD28_03865 PF13561 Enoyl-(Acyl carrier protein) reductase SD28_03870 PF00571 CBS domain SD28_03870 PF01380 SIS domain SD28_03875 PF00834 Ribulose-phosphate 3 epimerase family SD28_03880 PF00483 Nucleotidyl transferase SD28_03880 PF01050 Mannose-6-phosphate isomerase SD28_03885 PF13419 Haloacid dehalogenase-like hydrolase SD28_03890 PF00294 pfkB family carbohydrate kinase SD28_03895 PF03575 Peptidase family S51 SD28_03900 PF01112 Asparaginase SD28_03935 PF01381 Helix-turn-helix SD28_03940 PF02600 Disulfide bond formation protein DsbB SD28_03945 PF00291 Pyridoxal-phosphate dependent enzyme SD28_03950 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family SD28_03955 PF01926 50S ribosome-binding GTPase SD28_03955 PF10396 GTP-binding protein TrmE N-terminus SD28_03955 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE SD28_03965 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SD28_03970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SD28_03975 PF00588 SpoU rRNA Methylase family SD28_03980 PF01351 Ribonuclease HII SD28_03985 PF04386 Stringent starvation protein B SD28_03995 PF00380 Ribosomal protein S9/S16 SD28_04000 PF00572 Ribosomal protein L13 SD28_04005 PF13450 NAD(P)-binding Rossmann-like domain SD28_04010 PF03562 MltA specific insert domain SD28_04010 PF06725 3D domain SD28_04015 PF01025 GrpE SD28_04020 PF00012 Hsp70 protein SD28_04025 PF00226 DnaJ domain SD28_04025 PF00684 DnaJ central domain SD28_04025 PF01556 DnaJ C terminal domain SD28_04030 PF00072 Response regulator receiver domain SD28_04030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD28_04030 PF08448 PAS fold SD28_04035 PF00155 Aminotransferase class I and II SD28_04040 PF04488 Glycosyltransferase sugar-binding region containing DXD motif SD28_04045 PF02540 NAD synthase SD28_04050 PF02057 Glycosyl hydrolase family 59 SD28_04050 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SD28_04055 PF02321 Outer membrane efflux protein SD28_04060 PF00529 HlyD family secretion protein SD28_04060 PF16576 SD28_04060 SD28_04065 PF07690 Major Facilitator Superfamily SD28_04070 PF00501 AMP-binding enzyme SD28_04070 PF13193 AMP-binding enzyme C-terminal domain SD28_04075 PF00854 POT family SD28_04080 PF00854 POT family SD28_04085 PF04452 RNA methyltransferase SD28_04090 PF04286 SD28_04090 SD28_04100 PF02470 SD28_04100 SD28_04105 PF00005 ABC transporter SD28_04110 PF02405 SD28_04110 SD28_04115 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SD28_04120 PF00849 RNA pseudouridylate synthase SD28_04120 PF01479 S4 domain SD28_04125 PF13525 Outer membrane lipoprotein SD28_04130 PF04488 Glycosyltransferase sugar-binding region containing DXD motif SD28_04140 PF12796 Ankyrin repeats (3 copies) SD28_04150 PF12710 haloacid dehalogenase-like hydrolase SD28_04155 PF04332 SD28_04155 SD28_04160 PF11743 SD28_04160 SD28_04165 PF17171 SD28_04165 SD28_04165 PF17172 SD28_04165 SD28_04170 PF00842 Alanine racemase, C-terminal domain SD28_04170 PF01168 Alanine racemase, N-terminal domain SD28_04175 PF13520 Amino acid permease SD28_04180 PF00800 Prephenate dehydratase SD28_04180 PF01842 ACT domain SD28_04185 PF01863 Protein of unknown function DUF45 SD28_04190 PF03313 SD28_04190 SD28_04190 PF03315 Serine dehydratase beta chain SD28_04195 PF00266 Aminotransferase class-V SD28_04200 PF01521 Iron-sulphur cluster biosynthesis SD28_04205 PF01883 Domain of unknown function DUF59 SD28_04210 PF01467 Cytidylyltransferase SD28_04215 PF00037 4Fe-4S binding domain SD28_04220 PF00691 OmpA family SD28_04225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SD28_04225 PF03129 Anticodon binding domain SD28_04225 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SD28_04230 PF00707 Translation initiation factor IF-3, C-terminal domain SD28_04230 PF05198 Translation initiation factor IF-3, N-terminal domain SD28_04235 PF01632 Ribosomal protein L35 SD28_04240 PF00453 Ribosomal protein L20 SD28_04245 PF09335 SD28_04245 SD28_04250 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SD28_04265 PF01134 Glucose inhibited division protein A SD28_04265 PF13932 GidA associated domain 3 SD28_04275 PF13515 SD28_04275 SD28_04290 PF13737 SD28_04290 SD28_04295 PF01177 Asp/Glu/Hydantoin racemase SD28_04300 PF08378 SD28_04300 SD28_04305 PF00271 Helicase conserved C-terminal domain SD28_04305 PF02151 UvrB/uvrC motif SD28_04305 PF04851 Type III restriction enzyme, res subunit SD28_04305 PF12344 Ultra-violet resistance protein B SD28_04310 PF00929 Exonuclease SD28_04310 PF08411 Exonuclease C-terminal SD28_04315 PF13737 SD28_04315 SD28_04320 PF08282 haloacid dehalogenase-like hydrolase SD28_04325 PF06835 Lipopolysaccharide-assembly, LptC-related SD28_04330 PF03968 OstA-like protein SD28_04335 PF00005 ABC transporter SD28_04335 PF12399 Branched-chain amino acid ATP-binding cassette transporter SD28_04340 PF01557 Fumarylacetoacetate (FAA) hydrolase family SD28_04345 PF01048 Phosphorylase superfamily SD28_04345 PF07859 alpha/beta hydrolase fold SD28_04350 PF01416 tRNA pseudouridine synthase SD28_04355 PF00004 ATPase family associated with various cellular activities (AAA) SD28_04355 PF07724 AAA domain (Cdc48 subfamily) SD28_04355 PF10431 C-terminal, D2-small domain, of ClpB protein SD28_04360 PF00227 Proteasome subunit SD28_04370 PF03099 Biotin/lipoate A/B protein ligase family SD28_04375 PF00579 tRNA synthetases class I (W and Y) SD28_04375 PF01479 S4 domain SD28_04380 PF10977 SD28_04380 SD28_04390 PF01170 Putative RNA methylase family UPF0020 SD28_04390 PF02926 THUMP domain SD28_04390 PF10672 S-adenosylmethionine-dependent methyltransferase SD28_04400 PF00551 Formyl transferase SD28_04400 PF02911 Formyl transferase, C-terminal domain SD28_04405 PF02951 Prokaryotic glutathione synthetase, N-terminal domain SD28_04405 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain SD28_04410 PF00202 Aminotransferase class-III SD28_04415 PF07859 alpha/beta hydrolase fold SD28_04420 PF00809 Pterin binding enzyme SD28_04420 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SD28_04425 PF02152 Dihydroneopterin aldolase SD28_04430 PF00501 AMP-binding enzyme SD28_04430 PF13193 AMP-binding enzyme C-terminal domain SD28_04435 PF00425 chorismate binding enzyme SD28_04435 PF01063 Aminotransferase class IV SD28_04440 PF00117 Glutamine amidotransferase class-I SD28_04450 PF00248 Aldo/keto reductase family SD28_04455 PF00929 Exonuclease SD28_04460 PF02557 D-alanyl-D-alanine carboxypeptidase SD28_04470 PF03435 Saccharopine dehydrogenase SD28_04470 PF16653 SD28_04470 SD28_04475 PF00171 Aldehyde dehydrogenase family SD28_04480 PF07063 Domain of unknown function (DUF1338) SD28_04485 PF01165 Ribosomal protein S21 SD28_04490 PF09424 Yqey-like protein SD28_04495 PF01807 CHC2 zinc finger SD28_04495 PF08275 DNA primase catalytic core, N-terminal domain SD28_04495 PF10410 DnaB-helicase binding domain of primase SD28_04495 PF13662 Toprim domain SD28_04500 PF00140 Sigma-70 factor, region 1 SD28_04500 PF03979 Sigma-70 factor, region 1 SD28_04500 PF04539 Sigma-70 region 3 SD28_04500 PF04542 Sigma-70 region 2 SD28_04500 PF04545 Sigma-70, region 4 SD28_04500 PF04546 Sigma-70, non-essential region SD28_04505 PF00464 Serine hydroxymethyltransferase SD28_04510 PF04751 Protein of unknown function (DUF615) SD28_04515 PF00348 Polyprenyl synthetase SD28_04545 PF01545 Cation efflux family SD28_04545 PF16916 SD28_04545 SD28_04550 PF00483 Nucleotidyl transferase SD28_04555 PF00501 AMP-binding enzyme SD28_04555 PF13193 AMP-binding enzyme C-terminal domain SD28_04555 PF16177 SD28_04555 SD28_04560 PF00892 EamA-like transporter family SD28_04565 PF02568 Thiamine biosynthesis protein (ThiI) SD28_04570 PF01206 Sulfurtransferase TusA SD28_04575 PF03966 Trm112p-like protein SD28_04580 PF02348 Cytidylyltransferase SD28_04585 PF01230 HIT domain SD28_04590 PF00639 PPIC-type PPIASE domain SD28_04595 PF00270 DEAD/DEAH box helicase SD28_04595 PF00271 Helicase conserved C-terminal domain SD28_04595 PF03880 DbpA RNA binding domain SD28_04600 PF13546 SD28_04600 SD28_04605 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) SD28_04610 PF13535 ATP-grasp domain SD28_04615 PF09334 tRNA synthetases class I (M) SD28_04625 PF16653 SD28_04625 SD28_04630 PF13673 Acetyltransferase (GNAT) domain SD28_04635 PF07690 Major Facilitator Superfamily SD28_04640 PF00625 Guanylate kinase SD28_04645 PF03099 Biotin/lipoate A/B protein ligase family SD28_04645 PF08279 HTH domain SD28_04650 PF13500 AAA domain SD28_04660 PF00155 Aminotransferase class I and II SD28_04665 PF04055 Radical SAM superfamily SD28_04665 PF06968 Biotin and Thiamin Synthesis associated domain SD28_04670 PF00202 Aminotransferase class-III SD28_04675 PF01171 PP-loop family SD28_04675 PF09179 TilS substrate binding domain SD28_04675 PF11734 TilS substrate C-terminal domain SD28_04680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SD28_04680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SD28_04685 PF00303 Thymidylate synthase SD28_04690 PF01790 SD28_04690 SD28_04695 PF00575 S1 RNA binding domain SD28_04695 PF10150 Ribonuclease E/G family SD28_04700 PF00266 Aminotransferase class-V SD28_04710 PF02565 Recombination protein O C terminal SD28_04710 PF11967 Recombination protein O N terminal SD28_04715 PF09335 SD28_04715 SD28_04720 PF09335 SD28_04720 SD28_04725 PF01722 BolA-like protein SD28_04730 PF01812 5-formyltetrahydrofolate cyclo-ligase family SD28_04735 PF02463 RecF/RecN/SMC N terminal domain SD28_04740 PF01026 TatD related DNase SD28_04745 PF02092 SD28_04745 SD28_04745 PF05746 DALR anticodon binding domain SD28_04750 PF07690 Major Facilitator Superfamily SD28_04755 PF00570 HRDC domain SD28_04755 PF01612 3'-5' exonuclease SD28_04760 PF01541 GIY-YIG catalytic domain SD28_04760 PF02151 UvrB/uvrC motif SD28_04760 PF08459 UvrC Helix-hairpin-helix N-terminal SD28_04760 PF12826 Helix-hairpin-helix motif SD28_04765 PF02646 SD28_04765 SD28_04770 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SD28_04775 PF00857 Isochorismatase family SD28_04780 PF00999 Sodium/hydrogen exchanger family SD28_04785 PF00892 EamA-like transporter family SD28_04790 PF01571 Aminomethyltransferase folate-binding domain SD28_04795 PF00580 UvrD/REP helicase N-terminal domain SD28_04795 PF13361 UvrD-like helicase C-terminal domain SD28_04800 PF00083 Sugar (and other) transporter SD28_04805 PF00581 Rhodanese-like domain SD28_04810 PF00096 Zinc finger, C2H2 type SD28_04815 PF00206 Lyase SD28_04815 PF10415 Fumarase C C-terminus SD28_04820 PF00916 SD28_04820 SD28_04835 PF03099 Biotin/lipoate A/B protein ligase family SD28_04840 PF04359 Protein of unknown function (DUF493) SD28_04845 PF00768 D-alanyl-D-alanine carboxypeptidase SD28_04845 PF07943 Penicillin-binding protein 5, C-terminal domain SD28_04850 PF00719 Inorganic pyrophosphatase SD28_04855 PF02601 SD28_04855 SD28_04855 PF13742 SD28_04855 SD28_04860 PF02609 Exonuclease VII small subunit SD28_04865 PF00854 POT family SD28_04875 PF01171 PP-loop family SD28_04880 PF01668 SmpB protein SD28_04885 PF03364 Polyketide cyclase / dehydrase and lipid transport SD28_04890 PF03658 RnfH family Ubiquitin SD28_04895 PF01797 Transposase IS200 like SD28_04900 PF01266 FAD dependent oxidoreductase SD28_04910 PF00009 Elongation factor Tu GTP binding domain SD28_04910 PF00679 Elongation factor G C-terminus SD28_04910 PF03144 Elongation factor Tu domain 2 SD28_04915 PF00793 DAHP synthetase I family SD28_04920 PF00448 SRP54-type protein, GTPase domain SD28_04920 PF02881 SRP54-type protein, helical bundle domain SD28_04920 PF02978 Signal peptide binding domain SD28_04925 PF07843 SD28_04925 SD28_04930 PF01925 SD28_04930 SD28_04935 PF01176 Translation initiation factor 1A / IF-1 SD28_04940 PF07690 Major Facilitator Superfamily SD28_04945 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family SD28_04950 PF00005 ABC transporter SD28_04950 PF12848 ABC transporter SD28_04955 PF00588 SpoU rRNA Methylase family SD28_04960 PF00011 Hsp20/alpha crystallin family SD28_04965 PF00571 CBS domain SD28_04970 PF00027 Cyclic nucleotide-binding domain SD28_04970 PF13545 Crp-like helix-turn-helix domain SD28_04980 PF01526 SD28_04980 SD28_04980 PF13700 SD28_04980 SD28_04985 PF00239 Resolvase, N terminal domain SD28_04985 PF02796 Helix-turn-helix domain of resolvase SD28_04990 PF01243 Pyridoxamine 5'-phosphate oxidase SD28_04990 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region SD28_04995 PF00665 Integrase core domain SD28_04995 PF13936 Helix-turn-helix domain SD28_05000 PF00443 Ubiquitin carboxyl-terminal hydrolase SD28_05000 PF00856 SET domain SD28_05005 PF01625 Peptide methionine sulfoxide reductase SD28_05005 PF01641 SelR domain SD28_05010 PF07690 Major Facilitator Superfamily SD28_05040 PF08331 SD28_05040 SD28_05040 PF13484 SD28_05040 SD28_05045 PF02410 Oligomerisation domain SD28_05055 PF00580 UvrD/REP helicase N-terminal domain SD28_05055 PF13361 UvrD-like helicase C-terminal domain SD28_05065 PF00268 Ribonucleotide reductase, small chain SD28_05065 PF00462 Glutaredoxin SD28_05070 PF00462 Glutaredoxin SD28_05075 PF00317 Ribonucleotide reductase, all-alpha domain SD28_05075 PF02867 Ribonucleotide reductase, barrel domain SD28_05080 PF00056 lactate/malate dehydrogenase, NAD binding domain SD28_05080 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SD28_05090 PF03232 SD28_05090 SD28_05095 PF00899 ThiF family SD28_05100 PF00578 AhpC/TSA family SD28_05100 PF10417 C-terminal domain of 1-Cys peroxiredoxin SD28_05110 PF03831 PhnA protein SD28_05110 PF08274 PhnA Zinc-Ribbon SD28_05115 PF01227 GTP cyclohydrolase I SD28_05120 PF00270 DEAD/DEAH box helicase SD28_05120 PF00271 Helicase conserved C-terminal domain SD28_05140 PF00933 Glycosyl hydrolase family 3 N terminal domain SD28_05145 PF00106 short chain dehydrogenase SD28_05150 PF06314 Acetoacetate decarboxylase (ADC) SD28_05160 PF00962 Adenosine/AMP deaminase SD28_05165 PF13520 Amino acid permease SD28_05170 PF00117 Glutamine amidotransferase class-I SD28_05170 PF00958 GMP synthase C terminal domain SD28_05170 PF02540 NAD synthase SD28_05175 PF02779 Transketolase, pyrimidine binding domain SD28_05175 PF02780 Transketolase, C-terminal domain SD28_05175 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SD28_05180 PF00571 CBS domain SD28_05185 PF05491 Holliday junction DNA helicase ruvB C-terminus SD28_05185 PF05496 Holliday junction DNA helicase ruvB N-terminus SD28_05190 PF01363 FYVE zinc finger SD28_05195 PF01925 SD28_05195 SD28_05200 PF05153 Family of unknown function (DUF706) SD28_05205 PF00083 Sugar (and other) transporter SD28_05210 PF02614 Glucuronate isomerase SD28_05215 PF01081 KDPG and KHG aldolase SD28_05220 PF00294 pfkB family carbohydrate kinase SD28_05225 PF03786 D-mannonate dehydratase (UxuA) SD28_05230 PF01232 Mannitol dehydrogenase Rossmann domain SD28_05230 PF08125 Mannitol dehydrogenase C-terminal domain SD28_05245 PF00854 POT family SD28_05250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD28_05250 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD28_05255 PF03372 Endonuclease/Exonuclease/phosphatase family SD28_05260 PF01409 tRNA synthetases class II core domain (F) SD28_05260 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SD28_05285 PF01588 Putative tRNA binding domain SD28_05285 PF03147 Ferredoxin-fold anticodon binding domain SD28_05285 PF03483 B3/4 domain SD28_05285 PF03484 tRNA synthetase B5 domain SD28_05290 PF13091 PLD-like domain SD28_05290 PF13396 SD28_05290 SD28_05295 PF10609 ParA/MinD ATPase like SD28_05300 PF00692 dUTPase SD28_05305 PF00924 Mechanosensitive ion channel SD28_05315 PF00133 tRNA synthetases class I (I, L, M and V) SD28_05315 PF08264 Anticodon-binding domain of tRNA SD28_05315 PF13603 Leucyl-tRNA synthetase, Domain 2 SD28_05320 PF03652 Uncharacterised protein family (UPF0081) SD28_05325 PF02622 Uncharacterized ACR, COG1678 SD28_05330 PF00293 NUDIX domain SD28_05335 PF13601 Winged helix DNA-binding domain SD28_05340 PF11697 SD28_05340 SD28_05345 PF00085 Thioredoxin SD28_05355 PF01458 Uncharacterized protein family (UPF0051) SD28_05360 PF00005 ABC transporter SD28_05365 PF01458 Uncharacterized protein family (UPF0051) SD28_05370 PF02082 Transcriptional regulator SD28_05375 PF02254 TrkA-N domain SD28_05380 PF13520 Amino acid permease SD28_05390 PF00923 Transaldolase SD28_05395 PF00883 Cytosol aminopeptidase family, catalytic domain SD28_05400 PF02321 Outer membrane efflux protein SD28_05405 PF01411 tRNA synthetases class II (A) SD28_05405 PF02272 DHHA1 domain SD28_05405 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SD28_05425 PF01256 Carbohydrate kinase SD28_05425 PF03853 YjeF-related protein N-terminus SD28_05430 PF00255 Glutathione peroxidase SD28_05435 PF01817 Chorismate mutase type II SD28_05445 PF06325 Ribosomal protein L11 methyltransferase (PrmA) SD28_05455 PF00762 Ferrochelatase SD28_05460 PF00875 DNA photolyase SD28_05460 PF03441 FAD binding domain of DNA photolyase SD28_05465 PF02441 Flavoprotein SD28_05465 PF04127 DNA / pantothenate metabolism flavoprotein SD28_05470 PF07690 Major Facilitator Superfamily SD28_05475 PF13520 Amino acid permease SD28_05480 PF00171 Aldehyde dehydrogenase family SD28_05480 PF01619 Proline dehydrogenase SD28_05480 PF14850 DNA-binding domain of Proline dehydrogenase SD28_05485 PF03937 Flavinator of succinate dehydrogenase SD28_05495 PF01761 3-dehydroquinate synthase SD28_05500 PF01202 Shikimate kinase SD28_05505 PF00263 SD28_05505 SD28_05505 PF03958 Bacterial type II/III secretion system short domain SD28_05510 PF04351 Pilus assembly protein, PilP SD28_05515 PF04350 Pilus assembly protein, PilO SD28_05520 PF05137 SD28_05520 SD28_05530 PF00406 Adenylate kinase SD28_05530 PF05191 Adenylate kinase, active site lid SD28_05535 PF01565 FAD binding domain SD28_05535 PF02913 FAD linked oxidases, C-terminal domain SD28_05535 PF13183 4Fe-4S dicluster domain SD28_05540 PF04116 SD28_05540 SD28_05550 PF01926 50S ribosome-binding GTPase SD28_05550 PF07650 KH domain SD28_05555 PF00155 Aminotransferase class I and II SD28_05560 PF00814 Glycoprotease family SD28_05565 PF01979 Amidohydrolase family SD28_05570 PF01926 50S ribosome-binding GTPase SD28_05575 PF08238 Sel1 repeat SD28_05580 PF00265 Thymidine kinase SD28_05585 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SD28_05590 PF01596 O-methyltransferase SD28_05595 PF00919 Uncharacterized protein family UPF0004 SD28_05595 PF01938 TRAM domain SD28_05595 PF04055 Radical SAM superfamily SD28_05600 PF02562 PhoH-like protein SD28_05605 PF02130 Uncharacterized protein family UPF0054 SD28_05610 PF00571 CBS domain SD28_05610 PF03471 Transporter associated domain SD28_05615 PF00795 Carbon-nitrogen hydrolase SD28_05630 PF08282 haloacid dehalogenase-like hydrolase SD28_05640 PF02547 Queuosine biosynthesis protein SD28_05645 PF01494 FAD binding domain SD28_05650 PF01494 FAD binding domain SD28_05655 PF03695 Uncharacterised protein family (UPF0149) SD28_05670 PF01223 DNA/RNA non-specific endonuclease SD28_05675 PF00557 Metallopeptidase family M24 SD28_05675 PF01321 Creatinase/Prolidase N-terminal domain SD28_05675 PF16188 SD28_05675 SD28_05675 PF16189 SD28_05675 SD28_05680 PF02578 Multi-copper polyphenol oxidoreductase laccase SD28_05685 PF04551 GcpE protein SD28_05690 PF01784 NIF3 (NGG1p interacting factor 3) SD28_05700 PF00665 Integrase core domain SD28_05700 PF13936 Helix-turn-helix domain SD28_05710 PF00083 Sugar (and other) transporter SD28_05715 PF01380 SIS domain SD28_05720 PF00375 Sodium:dicarboxylate symporter family SD28_05725 PF02423 Ornithine cyclodeaminase/mu-crystallin family SD28_05730 PF00571 CBS domain SD28_05730 PF01595 SD28_05730 SD28_05730 PF03471 Transporter associated domain SD28_05735 PF01386 Ribosomal L25p family SD28_05740 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SD28_05740 PF14572 Phosphoribosyl synthetase-associated domain SD28_05745 PF04193 PQ loop repeat SD28_05750 PF00583 Acetyltransferase (GNAT) family SD28_05760 PF00849 RNA pseudouridylate synthase SD28_05760 PF01479 S4 domain SD28_05765 PF12895 Anaphase-promoting complex, cyclosome, subunit 3 SD28_05770 PF04055 Radical SAM superfamily SD28_05775 PF00772 DnaB-like helicase N terminal domain SD28_05775 PF03796 DnaB-like helicase C terminal domain SD28_05780 PF01281 Ribosomal protein L9, N-terminal domain SD28_05780 PF03948 Ribosomal protein L9, C-terminal domain SD28_05785 PF01084 Ribosomal protein S18 SD28_05790 PF01250 Ribosomal protein S6 SD28_05795 PF01218 Coproporphyrinogen III oxidase SD28_05805 PF00266 Aminotransferase class-V SD28_05810 PF02224 Cytidylate kinase SD28_05815 PF13561 Enoyl-(Acyl carrier protein) reductase SD28_05820 PF08534 Redoxin SD28_05825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SD28_05825 PF03466 LysR substrate binding domain SD28_05830 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family SD28_05835 PF01464 Transglycosylase SLT domain SD28_05840 PF13279 Thioesterase-like superfamily SD28_05845 PF01171 PP-loop family SD28_05850 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SD28_05850 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SD28_05870 PF01943 SD28_05870 SD28_05870 PF14667 Polysaccharide biosynthesis C-terminal domain SD28_05885 PF00005 ABC transporter SD28_05885 PF00664 ABC transporter transmembrane region SD28_05890 PF00005 ABC transporter SD28_05890 PF00664 ABC transporter transmembrane region SD28_05895 PF00375 Sodium:dicarboxylate symporter family SD28_05900 PF01042 Endoribonuclease L-PSP SD28_05905 PF07690 Major Facilitator Superfamily SD28_05915 PF06150 ChaB SD28_05920 PF13561 Enoyl-(Acyl carrier protein) reductase SD28_05930 PF01966 HD domain SD28_05930 PF13286 Phosphohydrolase-associated domain SD28_05935 PF07690 Major Facilitator Superfamily SD28_05945 PF00704 Glycosyl hydrolases family 18 SD28_05945 PF02839 Carbohydrate binding domain SD28_05955 PF14681 Uracil phosphoribosyltransferase SD28_05960 PF03702 Uncharacterised protein family (UPF0075) SD28_05965 PF00005 ABC transporter SD28_05965 PF12848 ABC transporter SD28_05965 PF16326 SD28_05965 SD28_05970 PF07690 Major Facilitator Superfamily SD28_05975 PF04632 SD28_05975 SD28_05980 PF00588 SpoU rRNA Methylase family SD28_05980 PF08032 RNA 2'-O ribose methyltransferase substrate binding SD28_05985 PF01225 Mur ligase family, catalytic domain SD28_05985 PF02875 Mur ligase family, glutamate ligase domain SD28_05985 PF08245 Mur ligase middle domain SD28_05995 PF00156 Phosphoribosyl transferase domain SD28_06000 PF00149 Calcineurin-like phosphoesterase SD28_06005 PF01225 Mur ligase family, catalytic domain SD28_06005 PF02875 Mur ligase family, glutamate ligase domain SD28_06005 PF08245 Mur ligase middle domain SD28_06015 PF00749 tRNA synthetases class I (E and Q), catalytic domain SD28_06015 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SD28_06020 PF01293 Phosphoenolpyruvate carboxykinase SD28_06025 PF00109 Beta-ketoacyl synthase, N-terminal domain SD28_06025 PF02801 Beta-ketoacyl synthase, C-terminal domain SD28_06030 PF00550 Phosphopantetheine attachment site SD28_06035 PF13561 Enoyl-(Acyl carrier protein) reductase SD28_06040 PF00698 Acyl transferase domain SD28_06045 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SD28_06045 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SD28_06050 PF02504 Fatty acid synthesis protein SD28_06055 PF01783 Ribosomal L32p protein family SD28_06060 PF02620 SD28_06060 SD28_06065 PF00456 Transketolase, thiamine diphosphate binding domain SD28_06065 PF02779 Transketolase, pyrimidine binding domain SD28_06065 PF02780 Transketolase, C-terminal domain SD28_06070 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SD28_06070 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SD28_06075 PF00162 Phosphoglycerate kinase SD28_06080 PF00224 Pyruvate kinase, barrel domain SD28_06080 PF02887 Pyruvate kinase, alpha/beta domain SD28_06085 PF01116 Fructose-bisphosphate aldolase class-II SD28_06105 PF00005 ABC transporter SD28_06105 PF08402 TOBE domain SD28_06110 PF00528 Binding-protein-dependent transport system inner membrane component SD28_06115 PF00528 Binding-protein-dependent transport system inner membrane component SD28_06130 PF01016 Ribosomal L27 protein SD28_06135 PF00829 Ribosomal prokaryotic L21 protein SD28_06140 PF01043 SecA preprotein cross-linking domain SD28_06140 PF02810 SEC-C motif SD28_06140 PF07516 SecA Wing and Scaffold domain SD28_06140 PF07517 SecA DEAD-like domain SD28_06150 PF01048 Phosphorylase superfamily SD28_06165 PF00005 ABC transporter SD28_06170 PF01272 Transcription elongation factor, GreA/GreB, C-term SD28_06170 PF03449 Transcription elongation factor, N-terminal SD28_06175 PF07963 Prokaryotic N-terminal methylation motif SD28_06180 PF00342 Phosphoglucose isomerase SD28_06185 PF04263 Thiamin pyrophosphokinase, catalytic domain SD28_06185 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SD28_06190 PF00478 IMP dehydrogenase / GMP reductase domain SD28_06190 PF00571 CBS domain SD28_06195 PF00883 Cytosol aminopeptidase family, catalytic domain SD28_06195 PF02789 Cytosol aminopeptidase family, N-terminal domain SD28_06200 PF03739 SD28_06200 SD28_06205 PF03739 SD28_06205 SD28_06210 PF00675 Insulinase (Peptidase family M16) SD28_06210 PF05193 Peptidase M16 inactive domain SD28_06215 PF00675 Insulinase (Peptidase family M16) SD28_06215 PF05193 Peptidase M16 inactive domain SD28_06220 PF03602 Conserved hypothetical protein 95 SD28_06225 PF03458 SD28_06225 SD28_06230 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) SD28_06235 PF01048 Phosphorylase superfamily SD28_06240 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SD28_06245 PF00313 'Cold-shock' DNA-binding domain SD28_06255 PF01565 FAD binding domain SD28_06255 PF02913 FAD linked oxidases, C-terminal domain SD28_06255 PF13183 4Fe-4S dicluster domain SD28_06260 PF01676 Metalloenzyme superfamily SD28_06260 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SD28_06265 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SD28_06265 PF02403 Seryl-tRNA synthetase N-terminal domain SD28_06270 PF02463 RecF/RecN/SMC N terminal domain SD28_06275 PF01545 Cation efflux family SD28_06280 PF00155 Aminotransferase class I and II SD28_06285 PF00480 ROK family SD28_06290 PF02696 SD28_06290 SD28_06300 PF02245 Methylpurine-DNA glycosylase (MPG) SD28_06305 PF00301 Rubredoxin SD28_06315 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family SD28_06325 PF01478 Type IV leader peptidase family SD28_06325 PF06750 SD28_06325 SD28_06335 PF13354 Beta-lactamase enzyme family SD28_06340 PF01195 Peptidyl-tRNA hydrolase SD28_06345 PF01926 50S ribosome-binding GTPase SD28_06345 PF06071 Protein of unknown function (DUF933) SD28_06350 PF01225 Mur ligase family, catalytic domain SD28_06350 PF02875 Mur ligase family, glutamate ligase domain SD28_06350 PF08245 Mur ligase middle domain SD28_06355 PF02091 Glycyl-tRNA synthetase alpha subunit SD28_06360 PF02347 Glycine cleavage system P-protein SD28_06365 PF02347 Glycine cleavage system P-protein SD28_06370 PF01597 Glycine cleavage H-protein SD28_06375 PF01571 Aminomethyltransferase folate-binding domain SD28_06375 PF08669 Glycine cleavage T-protein C-terminal barrel domain SD28_06380 PF01276 Orn/Lys/Arg decarboxylase, major domain SD28_06380 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SD28_06380 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SD28_06390 PF00005 ABC transporter SD28_06395 PF02687 SD28_06395 SD28_06395 PF12704 MacB-like periplasmic core domain SD28_06405 PF04488 Glycosyltransferase sugar-binding region containing DXD motif SD28_06415 PF13384 Homeodomain-like domain SD28_06415 PF13592 SD28_06415 SD28_06420 PF02811 PHP domain SD28_06420 PF07733 Bacterial DNA polymerase III alpha subunit SD28_06420 PF14579 Helix-hairpin-helix motif SD28_06430 PF01464 Transglycosylase SLT domain SD28_06435 PF01053 Cys/Met metabolism PLP-dependent enzyme SD28_06440 PF02254 TrkA-N domain SD28_06445 PF00521 DNA gyrase/topoisomerase IV, subunit A SD28_06445 PF03989 DNA gyrase C-terminal domain, beta-propeller SD28_06455 PF00557 Metallopeptidase family M24 SD28_06460 PF03819 MazG nucleotide pyrophosphohydrolase domain SD28_06465 PF01597 Glycine cleavage H-protein SD28_06470 PF03033 Glycosyltransferase family 28 N-terminal domain SD28_06470 PF04101 Glycosyltransferase family 28 C-terminal domain SD28_06475 PF02575 YbaB/EbfC DNA-binding family SD28_06480 PF02132 RecR protein SD28_06480 PF13662 Toprim domain SD28_06490 PF02824 TGS domain SD28_06490 PF04607 Region found in RelA / SpoT proteins SD28_06490 PF13291 ACT domain SD28_06490 PF13328 HD domain SD28_06500 PF14102 SD28_06500 SD28_06505 PF08245 Mur ligase middle domain SD28_06510 PF00892 EamA-like transporter family SD28_06515 PF04055 Radical SAM superfamily SD28_06515 PF13394 4Fe-4S single cluster domain SD28_06520 PF00326 Prolyl oligopeptidase family SD28_06520 PF07859 alpha/beta hydrolase fold SD28_06525 PF01330 RuvA N terminal domain SD28_06525 PF07499 RuvA, C-terminal domain SD28_06525 PF14520 Helix-hairpin-helix domain SD28_06535 PF02075 Crossover junction endodeoxyribonuclease RuvC SD28_06540 PF01709 Transcriptional regulator SD28_06545 PF01965 DJ-1/PfpI family SD28_06550 PF04055 Radical SAM superfamily SD28_06550 PF16881 SD28_06550 SD28_06555 PF00210 Ferritin-like domain SD28_06575 PF01027 Inhibitor of apoptosis-promoting Bax1 SD28_06585 PF08897 SD28_06585 SD28_06590 PF00633 Helix-hairpin-helix motif SD28_06590 PF00730 HhH-GPD superfamily base excision DNA repair protein SD28_06595 PF04060 Putative Fe-S cluster SD28_06595 PF14697 4Fe-4S dicluster domain SD28_06600 PF04399 Glutaredoxin 2, C terminal domain SD28_06600 PF13417 Glutathione S-transferase, N-terminal domain SD28_06605 PF00534 Glycosyl transferases group 1 SD28_06615 PF01531 SD28_06615 SD28_06620 PF00852 Glycosyltransferase family 10 (fucosyltransferase) SD28_06630 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SD28_06635 PF01370 NAD dependent epimerase/dehydratase family SD28_06640 PF16363 SD28_06640 SD28_06645 PF01755 SD28_06645 SD28_06650 PF05598 SD28_06650 SD28_06655 PF01609 Transposase DDE domain SD28_06660 PF10142 PhoPQ-activated pathogenicity-related protein SD28_06670 PF13546 SD28_06670 SD28_06675 PF13359 SD28_06675 SD28_06680 PF13613 SD28_06680 SD28_06690 PF16363 SD28_06690 SD28_06695 PF01370 NAD dependent epimerase/dehydratase family SD28_06700 PF00535 Glycosyl transferase family 2 SD28_06730 PF03102 NeuB family SD28_06730 PF08666 SAF domain SD28_06740 PF00202 Aminotransferase class-III SD28_06745 PF13302 Acetyltransferase (GNAT) domain SD28_06750 PF02348 Cytidylyltransferase SD28_06755 PF00248 Aldo/keto reductase family SD28_06760 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SD28_06765 PF02719 Polysaccharide biosynthesis protein SD28_06770 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SD28_06770 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SD28_06770 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SD28_06785 PF02397 SD28_06785 SD28_06795 PF02719 Polysaccharide biosynthesis protein SD28_06800 PF00270 DEAD/DEAH box helicase SD28_06800 PF00271 Helicase conserved C-terminal domain SD28_06800 PF04408 Helicase associated domain (HA2) SD28_06800 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold SD28_06800 PF11898 SD28_06800 SD28_06805 PF02706 Chain length determinant protein SD28_06810 PF03971 Monomeric isocitrate dehydrogenase SD28_06815 PF03960 ArsC family SD28_06820 PF00501 AMP-binding enzyme SD28_06820 PF13193 AMP-binding enzyme C-terminal domain SD28_06825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SD28_06825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SD28_06825 PF09317 SD28_06825 SD28_06830 PF00378 Enoyl-CoA hydratase/isomerase family SD28_06830 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SD28_06830 PF00887 Acyl CoA binding protein SD28_06830 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SD28_06835 PF00108 Thiolase, N-terminal domain SD28_06835 PF02803 Thiolase, C-terminal domain SD28_06840 PF03061 Thioesterase superfamily SD28_06845 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SD28_06850 PF00491 Arginase family SD28_06865 PF00072 Response regulator receiver domain SD28_06865 PF00486 Transcriptional regulatory protein, C terminal SD28_06870 PF00512 His Kinase A (phospho-acceptor) domain SD28_06870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD28_06875 PF13450 NAD(P)-binding Rossmann-like domain SD28_06880 PF07103 SD28_06880 SD28_06885 PF02353 Mycolic acid cyclopropane synthetase SD28_06890 PF12915 SD28_06890 SD28_06895 PF00106 short chain dehydrogenase SD28_06900 PF00487 SD28_06900 SD28_06905 PF00575 S1 RNA binding domain SD28_06905 PF00773 RNB domain SD28_06910 PF01509 TruB family pseudouridylate synthase (N terminal domain) SD28_06910 PF16198 SD28_06910 SD28_06915 PF00035 Double-stranded RNA binding motif SD28_06915 PF14622 Ribonuclease-III-like SD28_06920 PF00717 Peptidase S24-like SD28_06920 PF10502 Signal peptidase, peptidase S26 SD28_06925 PF00072 Response regulator receiver domain SD28_06925 PF00486 Transcriptional regulatory protein, C terminal SD28_06930 PF03807 NADP oxidoreductase coenzyme F420-dependent SD28_06930 PF14748 Pyrroline-5-carboxylate reductase dimerisation SD28_06935 PF01725 Ham1 family SD28_06940 PF00534 Glycosyl transferases group 1 SD28_06940 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SD28_06945 PF00348 Polyprenyl synthetase SD28_06955 PF03976 Polyphosphate kinase 2 (PPK2) SD28_06980 PF13639 Ring finger domain SD28_06990 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD28_07000 PF01119 DNA mismatch repair protein, C-terminal domain SD28_07000 PF08676 MutL C terminal dimerisation domain SD28_07000 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD28_07005 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) SD28_07010 PF03193 Protein of unknown function, DUF258 SD28_07015 PF00750 tRNA synthetases class I (R) SD28_07015 PF03485 Arginyl tRNA synthetase N terminal domain SD28_07015 PF05746 DALR anticodon binding domain SD28_07020 PF03968 OstA-like protein SD28_07020 PF04453 Organic solvent tolerance protein SD28_07025 PF00639 PPIC-type PPIASE domain SD28_07025 PF09312 SurA N-terminal domain SD28_07030 PF00398 Ribosomal RNA adenine dimethylase SD28_07035 PF00149 Calcineurin-like phosphoesterase SD28_07040 PF01220 Dehydroquinase class II SD28_07045 PF00364 Biotin-requiring enzyme SD28_07050 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain SD28_07050 PF02785 Biotin carboxylase C-terminal domain SD28_07050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SD28_07065 PF00152 tRNA synthetases class II (D, K and N) SD28_07070 PF03099 Biotin/lipoate A/B protein ligase family SD28_07075 PF01368 DHH family SD28_07075 PF02272 DHHA1 domain SD28_07080 PF01594 SD28_07080 SD28_07085 PF01764 Lipase (class 3) SD28_07085 PF06594 SD28_07085 SD28_07095 PF04480 Protein of unknown function (DUF559) SD28_07105 PF04480 Protein of unknown function (DUF559) SD28_07115 PF13437 HlyD family secretion protein SD28_07115 PF13533 Biotin-lipoyl like SD28_07120 PF00005 ABC transporter SD28_07120 PF00664 ABC transporter transmembrane region SD28_07120 PF03412 Peptidase C39 family SD28_07130 PF13520 Amino acid permease SD28_07135 PF13416 Bacterial extracellular solute-binding protein SD28_07150 PF00588 SpoU rRNA Methylase family SD28_07155 PF00490 Delta-aminolevulinic acid dehydratase SD28_07160 PF01985 CRS1 / YhbY (CRM) domain SD28_07165 PF09115 DNA polymerase III, delta subunit, C terminal SD28_07165 PF13177 DNA polymerase III, delta subunit SD28_07170 PF01343 Peptidase family S49 SD28_07170 PF08496 SD28_07170 SD28_07175 PF00043 Glutathione S-transferase, C-terminal domain SD28_07175 PF13417 Glutathione S-transferase, N-terminal domain SD28_07180 PF04358 DsrC like protein SD28_07185 PF04362 Bacterial Fe(2+) trafficking SD28_07190 PF13231 SD28_07190 SD28_07200 PF12796 Ankyrin repeats (3 copies) SD28_07205 PF01098 SD28_07205 SD28_07210 PF02875 Mur ligase family, glutamate ligase domain SD28_07210 PF08245 Mur ligase middle domain SD28_07215 PF00953 Glycosyl transferase family 4 SD28_07215 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SD28_07220 PF00612 IQ calmodulin-binding motif SD28_07225 PF00313 'Cold-shock' DNA-binding domain SD28_07230 PF01165 Ribosomal protein S21 SD28_07235 PF05591 SD28_07235 SD28_07240 PF05943 SD28_07240 SD28_07285 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) SD28_07295 PF14107 SD28_07295 SD28_07300 PF01380 SIS domain SD28_07300 PF13522 Glutamine amidotransferase domain SD28_07305 PF00132 Bacterial transferase hexapeptide (six repeats) SD28_07305 PF12804 MobA-like NTP transferase domain SD28_07310 PF00293 NUDIX domain SD28_07310 PF01467 Cytidylyltransferase SD28_07320 PF02666 SD28_07320 SD28_07340 PF02163 Peptidase family M50 SD28_07350 PF13511 SD28_07350 SD28_07360 PF02824 TGS domain SD28_07360 PF04607 Region found in RelA / SpoT proteins SD28_07360 PF13328 HD domain SD28_07370 PF03222 Tryptophan/tyrosine permease family SD28_07380 PF00226 DnaJ domain SD28_07380 PF01556 DnaJ C terminal domain SD28_07390 PF03318 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2 SD28_07395 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SD28_07400 PF13520 Amino acid permease SD28_07405 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SD28_07405 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SD28_07410 PF03486 HI0933-like protein SD28_07420 PF00106 short chain dehydrogenase SD28_07425 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD28_07430 PF13520 Amino acid permease SD28_07435 PF00118 TCP-1/cpn60 chaperonin family SD28_07440 PF00166 Chaperonin 10 Kd subunit SD28_07460 PF01000 RNA polymerase Rpb3/RpoA insert domain SD28_07460 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SD28_07460 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SD28_07465 PF05496 Holliday junction DNA helicase ruvB N-terminus SD28_07465 PF12002 MgsA AAA+ ATPase C terminal SD28_07465 PF16193 SD28_07465 SD28_07470 PF02541 Ppx/GppA phosphatase family SD28_07475 PF00085 Thioredoxin SD28_07480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SD28_07480 PF07497 Rho termination factor, RNA-binding domain SD28_07480 PF07498 Rho termination factor, N-terminal domain SD28_07520 PF05139 Erythromycin esterase SD28_07525 PF00156 Phosphoribosyl transferase domain SD28_07530 PF10116 SD28_07530 SD28_07540 PF01588 Putative tRNA binding domain SD28_07540 PF08264 Anticodon-binding domain of tRNA SD28_07540 PF09334 tRNA synthetases class I (M) SD28_07550 PF01300 Telomere recombination SD28_07555 PF04279 SD28_07555 SD28_07565 PF02685 Glucokinase SD28_07570 PF01209 ubiE/COQ5 methyltransferase family SD28_07580 PF03109 SD28_07580 SD28_07585 PF01230 HIT domain SD28_07590 PF00156 Phosphoribosyl transferase domain SD28_07595 PF13489 Methyltransferase domain SD28_07605 PF01565 FAD binding domain SD28_07605 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SD28_07610 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SD28_07615 PF01926 50S ribosome-binding GTPase SD28_07615 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SD28_07630 PF12097 SD28_07630 SD28_07635 PF12097 SD28_07635 SD28_07640 PF00390 Malic enzyme, N-terminal domain SD28_07640 PF03949 Malic enzyme, NAD binding domain SD28_07645 PF01687 Riboflavin kinase SD28_07645 PF06574 FAD synthetase SD28_07650 PF00133 tRNA synthetases class I (I, L, M and V) SD28_07650 PF06827 Zinc finger found in FPG and IleRS SD28_07650 PF08264 Anticodon-binding domain of tRNA SD28_07655 PF01252 SD28_07655 SD28_07665 PF01728 FtsJ-like methyltransferase SD28_07670 PF00657 GDSL-like Lipase/Acylhydrolase SD28_07675 PF00117 Glutamine amidotransferase class-I SD28_07680 PF02195 ParB-like nuclease domain SD28_07680 PF08535 KorB domain SD28_07685 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SD28_07690 PF01131 DNA topoisomerase SD28_07690 PF01396 SD28_07690 SD28_07690 PF01751 Toprim domain SD28_07700 PF04932 SD28_07700 SD28_07715 PF04430 Protein of unknown function (DUF498/DUF598) SD28_07730 PF01446 SD28_07730