SD28_00030 SM01001 AIR carboxylase SD28_00040 SM01209 SD28_00040 SD28_00040 SM01210 SD28_00040 SD28_00090 SM00382 ATPases associated with a variety of cellular activities SD28_00105 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD28_00175 SM00729 Elongator protein 3, MiaB family, Radical SAM SD28_00235 SM00320 WD40 repeats SD28_00300 SM00937 SD28_00300 SD28_00315 SM00564 beta-propeller repeat SD28_00325 SM00387 Histidine kinase-like ATPases SD28_00325 SM00433 TopoisomeraseII SD28_00335 SM00644 SD28_00335 SD28_00340 SM00014 Acid phosphatase homologues SD28_00345 SM00382 ATPases associated with a variety of cellular activities SD28_00345 SM00962 SRP54-type protein, GTPase domain SD28_00345 SM00963 SRP54-type protein, helical bundle domain SD28_00350 SM00257 Lysin motif SD28_00370 SM01133 SD28_00370 SD28_00385 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SD28_00385 SM00474 3'-5' exonuclease SD28_00385 SM00475 5'-3' exonuclease SD28_00385 SM00482 DNA polymerase A domain SD28_00415 SM00382 ATPases associated with a variety of cellular activities SD28_00480 SM00387 Histidine kinase-like ATPases SD28_00480 SM00388 His Kinase A (phosphoacceptor) domain SD28_00520 SM00729 Elongator protein 3, MiaB family, Radical SAM SD28_00560 SM00487 DEAD-like helicases superfamily SD28_00560 SM00490 helicase superfamily c-terminal domain SD28_00595 SM00382 ATPases associated with a variety of cellular activities SD28_00615 SM01230 SD28_00615 SD28_00620 SM00248 ankyrin repeats SD28_00650 SM00367 Leucine-rich repeat - CC (cysteine-containing) subfamily SD28_00680 SM00320 WD40 repeats SD28_00690 SM00382 ATPases associated with a variety of cellular activities SD28_00735 SM00363 S4 RNA-binding domain SD28_00765 SM00316 Ribosomal protein S1-like RNA-binding domain SD28_00765 SM00322 K homology RNA-binding domain SD28_00785 SM00382 ATPases associated with a variety of cellular activities SD28_00855 SM00861 Transketolase, pyrimidine binding domain SD28_00910 SM00937 SD28_00910 SD28_00945 SM00797 Allophanate hydrolase subunit 2 SD28_00955 SM00796 Allophanate hydrolase subunit 1 SD28_00970 SM00838 Elongation factor G C-terminus SD28_01040 SM00487 DEAD-like helicases superfamily SD28_01040 SM00490 helicase superfamily c-terminal domain SD28_01075 SM00450 Rhodanese Homology Domain SD28_01080 SM00935 Outer membrane protein (OmpH-like) SD28_01130 SM00064 Protein present in Fab1, YOTB, Vac1, and EEA1 SD28_01150 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SD28_01260 SM00563 Phosphate acyltransferases SD28_01265 SM00563 Phosphate acyltransferases SD28_01295 SM00382 ATPases associated with a variety of cellular activities SD28_01330 SM00316 Ribosomal protein S1-like RNA-binding domain SD28_01335 SM00382 ATPases associated with a variety of cellular activities SD28_01335 SM00760 Bacterial dnaA protein helix-turn-helix domain SD28_01340 SM00480 DNA polymerase III beta subunit SD28_01345 SM00495 Chitin-binding domain type 3 SD28_01345 SM00636 SD28_01345 SD28_01360 SM00851 MGS-like domain SD28_01360 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SD28_01365 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SD28_01380 SM00955 SD28_01380 SD28_01410 SM00382 ATPases associated with a variety of cellular activities SD28_01455 SM01152 SD28_01455 SD28_01585 SM00479 SD28_01585 SD28_01590 SM00841 Elongation factor P, C-terminal SD28_01590 SM01185 SD28_01590 SD28_01675 SM00382 ATPases associated with a variety of cellular activities SD28_01675 SM01086 C-terminal, D2-small domain, of ClpB protein SD28_01705 SM00563 Phosphate acyltransferases SD28_01720 SM00316 Ribosomal protein S1-like RNA-binding domain SD28_01740 SM00842 Cell division protein FtsA SD28_01745 SM00864 Tubulin/FtsZ family, GTPase domain SD28_01745 SM00865 Tubulin/FtsZ family, C-terminal domain SD28_01755 SM00382 ATPases associated with a variety of cellular activities SD28_01815 SM01211 SD28_01815 SD28_01845 SM00845 GatB domain SD28_01865 SM01006 Siderophore biosynthesis protein domain SD28_01960 SM00184 Ring finger SD28_01990 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SD28_01995 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SD28_02050 SM00729 Elongator protein 3, MiaB family, Radical SAM SD28_02080 SM00327 von Willebrand factor (vWF) type A domain SD28_02085 SM00327 von Willebrand factor (vWF) type A domain SD28_02090 SM00028 Tetratricopeptide repeats SD28_02130 SM00798 AICARFT/IMPCHase bienzyme SD28_02130 SM00851 MGS-like domain SD28_02140 SM00788 Adenylosuccinate synthetase SD28_02165 SM00382 ATPases associated with a variety of cellular activities SD28_02200 SM00487 DEAD-like helicases superfamily SD28_02300 SM00838 Elongation factor G C-terminus SD28_02300 SM00889 Elongation factor G, domain IV SD28_02305 SM01403 SD28_02305 SD28_02325 SM01382 SD28_02325 SD28_02325 SM01383 SD28_02325 SD28_02340 SM00322 K homology RNA-binding domain SD28_02360 SM01374 SD28_02360 SD28_02430 SM00363 S4 RNA-binding domain SD28_02430 SM01390 SD28_02430 SD28_02435 SM00662 RNA polymerases D SD28_02445 SM00387 Histidine kinase-like ATPases SD28_02455 SM00562 SD28_02455 SD28_02475 SM00671 Sel1-like repeats. SD28_02505 SM00244 prohibitin homologues SD28_02580 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SD28_02580 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SD28_02585 SM00649 Ribosomal protein L11/L12 SD28_02610 SM00663 RNA polymerase I subunit A N-terminus SD28_02700 SM00495 Chitin-binding domain type 3 SD28_02700 SM00636 SD28_02700 SD28_02710 SM00945 ProQ/FINO family SD28_02740 SM00843 SD28_02740 SD28_02750 SM00859 Semialdehyde dehydrogenase, NAD binding domain SD28_02805 SM00184 Ring finger SD28_02810 SM00840 SD28_02810 SD28_02870 SM00062 Bacterial periplasmic substrate-binding proteins SD28_02885 SM00382 ATPases associated with a variety of cellular activities SD28_02905 SM00316 Ribosomal protein S1-like RNA-binding domain SD28_02935 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD28_02940 SM00450 Rhodanese Homology Domain SD28_02945 SM00849 Metallo-beta-lactamase superfamily SD28_02950 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. SD28_02990 SM00248 ankyrin repeats SD28_03025 SM00849 Metallo-beta-lactamase superfamily SD28_03035 SM00899 SD28_03035 SD28_03105 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SD28_03105 SM00292 breast cancer carboxy-terminal domain SD28_03105 SM00532 Ligase N family SD28_03150 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SD28_03150 SM00534 ATPase domain of DNA mismatch repair MUTS family SD28_03240 SM00421 helix_turn_helix, Lux Regulon SD28_03345 SM00986 Uracil DNA glycosylase superfamily SD28_03345 SM00987 UreE urease accessory protein, C-terminal domain SD28_03350 SM00434 DNA Topoisomerase IV SD28_03365 SM00935 Outer membrane protein (OmpH-like) SD28_03400 SM00881 CoA binding domain SD28_03425 SM00387 Histidine kinase-like ATPases SD28_03425 SM00433 TopoisomeraseII SD28_03430 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SD28_03430 SM01232 SD28_03430 SD28_03455 SM01387 SD28_03455 SD28_03460 SM00316 Ribosomal protein S1-like RNA-binding domain SD28_03460 SM00322 K homology RNA-binding domain SD28_03480 SM01409 SD28_03480 SD28_03510 SM01192 SD28_03510 SD28_03510 SM01193 SD28_03510 SD28_03530 SM00829 Enoylreductase SD28_03540 SM00495 Chitin-binding domain type 3 SD28_03540 SM00636 SD28_03540 SD28_03545 SM00060 Fibronectin type 3 domain SD28_03545 SM00495 Chitin-binding domain type 3 SD28_03625 SM00852 Probable molybdopterin binding domain SD28_03650 SM00450 Rhodanese Homology Domain SD28_03660 SM00382 ATPases associated with a variety of cellular activities SD28_03660 SM00930 SD28_03660 SD28_03665 SM01207 SD28_03665 SD28_03705 SM01323 SD28_03705 SD28_03745 SM00870 SD28_03745 SD28_03750 SM00947 Carbonic anhydrase SD28_03770 SM00382 ATPases associated with a variety of cellular activities SD28_03770 SM00994 ClpX C4-type zinc finger SD28_03770 SM01086 C-terminal, D2-small domain, of ClpB protein SD28_03775 SM00382 ATPases associated with a variety of cellular activities SD28_03775 SM00464 Found in ATP-dependent protease La (LON) SD28_03780 SM00411 bacterial (prokaryotic) histone like domain SD28_03820 SM00244 prohibitin homologues SD28_03825 SM00244 prohibitin homologues SD28_03830 SM00226 Low molecular weight phosphatase family SD28_03870 SM00116 Domain in cystathionine beta-synthase and other proteins. SD28_03935 SM00530 Helix-turn-helix XRE-family like proteins SD28_04010 SM00925 MltA specific insert domain SD28_04025 SM00271 DnaJ molecular chaperone homology domain SD28_04030 SM00387 Histidine kinase-like ATPases SD28_04105 SM00382 ATPases associated with a variety of cellular activities SD28_04115 SM00047 Lysozyme subfamily 2 SD28_04120 SM00363 S4 RNA-binding domain SD28_04125 SM00028 Tetratricopeptide repeats SD28_04140 SM00248 ankyrin repeats SD28_04170 SM01005 Alanine racemase, C-terminal domain SD28_04225 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SD28_04265 SM01228 SD28_04265 SD28_04305 SM00487 DEAD-like helicases superfamily SD28_04305 SM00490 helicase superfamily c-terminal domain SD28_04310 SM00479 SD28_04310 SD28_04335 SM00382 ATPases associated with a variety of cellular activities SD28_04355 SM00382 ATPases associated with a variety of cellular activities SD28_04355 SM01086 C-terminal, D2-small domain, of ClpB protein SD28_04375 SM00363 S4 RNA-binding domain SD28_04390 SM00981 SD28_04390 SD28_04425 SM00905 Dihydroneopterin aldolase SD28_04455 SM00479 SD28_04455 SD28_04480 SM01150 SD28_04480 SD28_04495 SM00400 zinc finger SD28_04495 SM00493 SD28_04495 SD28_04595 SM00487 DEAD-like helicases superfamily SD28_04595 SM00490 helicase superfamily c-terminal domain SD28_04640 SM00072 Guanylate kinase homologues. SD28_04665 SM00729 Elongator protein 3, MiaB family, Radical SAM SD28_04665 SM00876 Biotin and Thiamin Synthesis associated domain SD28_04675 SM00977 TilS substrate C-terminal domain SD28_04695 SM00316 Ribosomal protein S1-like RNA-binding domain SD28_04735 SM00382 ATPases associated with a variety of cellular activities SD28_04755 SM00474 3'-5' exonuclease SD28_04760 SM00465 GIY-YIG type nucleases (URI domain) SD28_04805 SM00450 Rhodanese Homology Domain SD28_04810 SM00355 zinc finger SD28_04845 SM00936 Penicillin-binding protein 5, C-terminal domain SD28_04895 SM01321 SD28_04895 SD28_04920 SM00382 ATPases associated with a variety of cellular activities SD28_04920 SM00962 SRP54-type protein, GTPase domain SD28_04920 SM00963 SRP54-type protein, helical bundle domain SD28_04935 SM00316 Ribosomal protein S1-like RNA-binding domain SD28_04950 SM00382 ATPases associated with a variety of cellular activities SD28_04955 SM00967 RNA 2'-O ribose methyltransferase substrate binding SD28_04965 SM00116 Domain in cystathionine beta-synthase and other proteins. SD28_04970 SM00100 Cyclic nucleotide-monophosphate binding domain SD28_04985 SM00857 Resolvase, N terminal domain SD28_05000 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain SD28_05000 SM00355 zinc finger SD28_05120 SM00487 DEAD-like helicases superfamily SD28_05120 SM00490 helicase superfamily c-terminal domain SD28_05135 SM00148 Phospholipase C, catalytic domain (part); domain X SD28_05175 SM00861 Transketolase, pyrimidine binding domain SD28_05185 SM00382 ATPases associated with a variety of cellular activities SD28_05190 SM00064 Protein present in Fab1, YOTB, Vac1, and EEA1 SD28_05285 SM00873 B3/4 domain SD28_05285 SM00874 tRNA synthetase B5 domain SD28_05285 SM00896 Ferredoxin-fold anticodon binding domain SD28_05290 SM00155 Phospholipase D. Active site motifs. SD28_05320 SM00732 Likely ribonuclease with RNase H fold. SD28_05360 SM00382 ATPases associated with a variety of cellular activities SD28_05405 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SD28_05435 SM00830 Chorismate mutase type II SD28_05505 SM00965 Secretin and TonB N terminus short domain SD28_05575 SM00671 Sel1-like repeats. SD28_05595 SM00729 Elongator protein 3, MiaB family, Radical SAM SD28_05610 SM01091 Transporter associated domain SD28_05670 SM00477 DNA/RNA non-specific endonuclease SD28_05670 SM00892 DNA/RNA non-specific endonuclease SD28_05730 SM01091 Transporter associated domain SD28_05740 SM01400 SD28_05740 SD28_05745 SM00679 Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. SD28_05760 SM00363 S4 RNA-binding domain SD28_05770 SM00729 Elongator protein 3, MiaB family, Radical SAM SD28_05885 SM00382 ATPases associated with a variety of cellular activities SD28_05890 SM00382 ATPases associated with a variety of cellular activities SD28_05930 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD28_05945 SM00495 Chitin-binding domain type 3 SD28_05965 SM00382 ATPases associated with a variety of cellular activities SD28_06025 SM00825 Beta-ketoacyl synthase SD28_06035 SM00822 SD28_06035 SD28_06040 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SD28_06065 SM00861 Transketolase, pyrimidine binding domain SD28_06070 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SD28_06105 SM00382 ATPases associated with a variety of cellular activities SD28_06140 SM00957 SecA DEAD-like domain SD28_06140 SM00958 SecA preprotein cross-linking domain SD28_06185 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SD28_06190 SM00116 Domain in cystathionine beta-synthase and other proteins. SD28_06190 SM01240 SD28_06190 SD28_06245 SM00357 Cold shock protein domain SD28_06390 SM00382 ATPases associated with a variety of cellular activities SD28_06420 SM00481 DNA polymerase alpha chain like domain SD28_06440 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain SD28_06445 SM00434 DNA Topoisomerase IV SD28_06480 SM00493 SD28_06480 SD28_06490 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD28_06490 SM00954 Region found in RelA / SpoT proteins SD28_06525 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SD28_06550 SM00729 Elongator protein 3, MiaB family, Radical SAM SD28_06590 SM00478 endonuclease III SD28_06590 SM00525 SD28_06590 SD28_06770 SM00984 UDP binding domain SD28_06800 SM00382 ATPases associated with a variety of cellular activities SD28_06800 SM00487 DEAD-like helicases superfamily SD28_06800 SM00490 helicase superfamily c-terminal domain SD28_06800 SM00847 Helicase associated domain (HA2) Add an annotation SD28_06865 SM00448 cheY-homologous receiver domain SD28_06865 SM00862 Transcriptional regulatory protein, C terminal SD28_06870 SM00387 Histidine kinase-like ATPases SD28_06870 SM00388 His Kinase A (phosphoacceptor) domain SD28_06905 SM00316 Ribosomal protein S1-like RNA-binding domain SD28_06905 SM00955 SD28_06905 SD28_06915 SM00358 Double-stranded RNA binding motif SD28_06915 SM00535 Ribonuclease III family SD28_06925 SM00448 cheY-homologous receiver domain SD28_06925 SM00862 Transcriptional regulatory protein, C terminal SD28_06980 SM00184 Ring finger SD28_07000 SM00853 MutL C terminal dimerisation domain SD28_07000 SM01340 SD28_07000 SD28_07015 SM00836 DALR anticodon binding domain SD28_07015 SM01016 Arginyl tRNA synthetase N terminal dom SD28_07030 SM00650 Ribosomal RNA adenine dimethylases SD28_07050 SM00878 Biotin carboxylase C-terminal domain SD28_07120 SM00382 ATPases associated with a variety of cellular activities SD28_07155 SM01004 Delta-aminolevulinic acid dehydratase SD28_07160 SM01103 SD28_07160 SD28_07200 SM00248 ankyrin repeats SD28_07225 SM00357 Cold shock protein domain SD28_07360 SM00954 Region found in RelA / SpoT proteins SD28_07380 SM00271 DnaJ molecular chaperone homology domain SD28_07405 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SD28_07440 SM00883 Chaperonin 10 Kd subunit SD28_07460 SM00662 RNA polymerases D SD28_07465 SM00382 ATPases associated with a variety of cellular activities SD28_07480 SM00357 Cold shock protein domain SD28_07480 SM00382 ATPases associated with a variety of cellular activities SD28_07480 SM00959 Rho termination factor, N-terminal domain SD28_07640 SM00919 Malic enzyme, NAD binding domain SD28_07640 SM01274 SD28_07640 SD28_07645 SM00904 Riboflavin kinase SD28_07680 SM00470 ParB-like nuclease domain SD28_07690 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SD28_07690 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SD28_07690 SM00493 SD28_07690