locus-tag class description E4K63_00005 PF11638 DnaA N-terminal domain E4K63_00005 PF00308 Bacterial dnaA protein E4K63_00005 PF08299 Bacterial dnaA protein helix-turn-helix E4K63_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain E4K63_00010 PF02767 DNA polymerase III beta subunit, central domain E4K63_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain E4K63_00030 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E4K63_00030 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E4K63_00035 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4K63_00035 PF02142 MGS-like domain E4K63_00035 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain E4K63_00040 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain E4K63_00040 PF00117 Glutamine amidotransferase class-I E4K63_00045 PF00657 GDSL-like Lipase/Acylhydrolase E4K63_00045 PF06767 Sif protein E4K63_00050 PF00773 RNB domain E4K63_00055 PF02230 Phospholipase/Carboxylesterase E4K63_00060 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain E4K63_00060 PF03900 Porphobilinogen deaminase, C-terminal domain E4K63_00065 PF02537 CrcB-like protein, Camphor Resistance (CrcB) E4K63_00090 PF00005 ABC transporter E4K63_00105 PF00132 Bacterial transferase hexapeptide (six repeats) E4K63_00110 PF03550 Outer membrane lipoprotein LolB E4K63_00115 PF00288 GHMP kinases N terminal domain E4K63_00130 PF02325 YGGT family E4K63_00135 PF02594 Uncharacterised ACR, YggU family COG1872 E4K63_00145 PF18030 RimK PreATP-grasp domain E4K63_00145 PF08443 RimK-like ATP-grasp domain E4K63_00150 PF13333 Integrase core domain E4K63_00150 PF13276 HTH-like domain E4K63_00150 PF00665 Integrase core domain E4K63_00185 PF13610 DDE domain E4K63_00195 PF03772 Competence protein E4K63_00195 PF00753 Metallo-beta-lactamase superfamily E4K63_00195 PF13567 Domain of unknown function (DUF4131) E4K63_00210 PF00654 Voltage gated chloride channel E4K63_00230 PF13520 Amino acid permease E4K63_00285 PF00872 Transposase, Mutator family E4K63_00300 PF03222 Tryptophan/tyrosine permease family E4K63_00305 PF01018 GTP1/OBG E4K63_00305 PF01926 50S ribosome-binding GTPase E4K63_00310 PF13520 Amino acid permease E4K63_00315 PF06472 ABC transporter transmembrane region 2 E4K63_00315 PF00005 ABC transporter E4K63_00320 PF02938 GAD domain E4K63_00320 PF01336 OB-fold nucleic acid binding domain E4K63_00320 PF00152 tRNA synthetases class II (D, K and N) E4K63_00325 PF00686 Starch binding domain E4K63_00325 PF01373 Glycosyl hydrolase family 14 E4K63_00330 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain E4K63_00330 PF02896 PEP-utilising enzyme, TIM barrel domain E4K63_00330 PF00391 PEP-utilising enzyme, mobile domain E4K63_00335 PF07664 Ferrous iron transport protein B C terminus E4K63_00335 PF07670 Nucleoside recognition E4K63_00335 PF17910 FeoB cytosolic helical domain E4K63_00335 PF02421 Ferrous iron transport protein B E4K63_00340 PF00929 Exonuclease E4K63_00345 PF09285 Elongation factor P, C-terminal E4K63_00345 PF08207 Elongation factor P (EF-P) KOW-like domain E4K63_00345 PF01132 Elongation factor P (EF-P) OB domain E4K63_00350 PF00114 Pilin (bacterial filament) E4K63_00350 PF07963 Prokaryotic N-terminal methylation motif E4K63_00355 PF03279 Bacterial lipid A biosynthesis acyltransferase E4K63_00360 PF03279 Bacterial lipid A biosynthesis acyltransferase E4K63_00365 PF14849 YidC periplasmic domain E4K63_00365 PF02096 60Kd inner membrane protein E4K63_00370 PF01809 Putative membrane protein insertion efficiency factor E4K63_00375 PF00825 Ribonuclease P E4K63_00380 PF00468 Ribosomal protein L34 E4K63_00385 PF03222 Tryptophan/tyrosine permease family E4K63_00390 PF02527 rRNA small subunit methyltransferase G E4K63_00395 PF01168 Alanine racemase, N-terminal domain E4K63_00400 PF03466 LysR substrate binding domain E4K63_00400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K63_00405 PF07690 Major Facilitator Superfamily E4K63_00410 PF13580 SIS domain E4K63_00415 PF04355 SmpA / OmlA family E4K63_00420 PF01649 Ribosomal protein S20 E4K63_00425 PF00291 Pyridoxal-phosphate dependent enzyme E4K63_00430 PF00290 Tryptophan synthase alpha chain E4K63_00445 PF02861 Clp amino terminal domain, pathogenicity island component E4K63_00445 PF00004 ATPase family associated with various cellular activities (AAA) E4K63_00445 PF07724 AAA domain (Cdc48 subfamily) E4K63_00445 PF17871 AAA lid domain E4K63_00445 PF10431 C-terminal, D2-small domain, of ClpB protein E4K63_00475 PF01553 Acyltransferase E4K63_00485 PF01300 Telomere recombination E4K63_00490 PF00575 S1 RNA binding domain E4K63_00495 PF14437 MafB19-like deaminase E4K63_00500 PF07478 D-ala D-ala ligase C-terminus E4K63_00510 PF02491 SHS2 domain inserted in FTSA E4K63_00515 PF00091 Tubulin/FtsZ family, GTPase domain E4K63_00515 PF12327 FtsZ family, C-terminal domain E4K63_00520 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase E4K63_00525 PF12169 DNA polymerase III subunits gamma and tau domain III E4K63_00525 PF12170 DNA polymerase III tau subunit V interacting with alpha E4K63_00545 PF03600 Citrate transporter E4K63_00550 PF07690 Major Facilitator Superfamily E4K63_00575 PF02321 Outer membrane efflux protein E4K63_00585 PF00156 Phosphoribosyl transferase domain E4K63_00590 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain E4K63_00590 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal E4K63_00590 PF02769 AIR synthase related protein, C-terminal domain E4K63_00595 PF10397 Adenylosuccinate lyase C-terminus E4K63_00595 PF00206 Lyase E4K63_00610 PF02686 Glu-tRNAGln amidotransferase C subunit E4K63_00615 PF01425 Amidase E4K63_00620 PF02637 GatB domain E4K63_00620 PF02934 GatB/GatE catalytic domain E4K63_00625 PF13610 DDE domain E4K63_00635 PF02774 Semialdehyde dehydrogenase, dimerisation domain E4K63_00635 PF01118 Semialdehyde dehydrogenase, NAD binding domain E4K63_00640 PF07690 Major Facilitator Superfamily E4K63_00650 PF06276 Ferric iron reductase FhuF-like transporter E4K63_00650 PF04183 IucA / IucC family E4K63_00655 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) E4K63_00660 PF06276 Ferric iron reductase FhuF-like transporter E4K63_00660 PF04183 IucA / IucC family E4K63_00665 PF00282 Pyridoxal-dependent decarboxylase conserved domain E4K63_00670 PF00202 Aminotransferase class-III E4K63_00675 PF01842 ACT domain E4K63_00675 PF00696 Amino acid kinase family E4K63_00700 PF01475 Ferric uptake regulator family E4K63_00705 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 E4K63_00710 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E4K63_00715 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit E4K63_00720 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit E4K63_00730 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E4K63_00730 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region E4K63_00730 PF10531 SLBB domain E4K63_00735 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region E4K63_00735 PF00384 Molybdopterin oxidoreductase E4K63_00735 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal E4K63_00740 PF00146 NADH dehydrogenase E4K63_00745 PF12838 4Fe-4S dicluster domain E4K63_00750 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 E4K63_00755 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L E4K63_00760 PF00361 Proton-conducting membrane transporter E4K63_00760 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus E4K63_00765 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus E4K63_00765 PF00361 Proton-conducting membrane transporter E4K63_00770 PF00361 Proton-conducting membrane transporter E4K63_00775 PF04380 Membrane fusogenic activity E4K63_00780 PF01078 Magnesium chelatase, subunit ChlI E4K63_00780 PF13335 Magnesium chelatase, subunit ChlI C-terminal E4K63_00785 PF01208 Uroporphyrinogen decarboxylase (URO-D) E4K63_00795 PF17384 RimP C-terminal SH3 domain E4K63_00795 PF02576 RimP N-terminal domain E4K63_00800 PF13184 NusA-like KH domain E4K63_00800 PF08529 NusA N-terminal domain E4K63_00805 PF00009 Elongation factor Tu GTP binding domain E4K63_00805 PF11987 Translation-initiation factor 2 E4K63_00805 PF04760 Translation initiation factor IF-2, N-terminal region E4K63_00810 PF02033 Ribosome-binding factor A E4K63_00815 PF03129 Anticodon binding domain E4K63_00815 PF13393 Histidyl-tRNA synthetase E4K63_00825 PF03969 AFG1-like ATPase E4K63_00830 PF00849 RNA pseudouridylate synthase E4K63_00830 PF01479 S4 domain E4K63_00855 PF00119 ATP synthase A chain E4K63_00860 PF00137 ATP synthase subunit C E4K63_00865 PF00430 ATP synthase B/B' CF(0) E4K63_00870 PF00213 ATP synthase delta (OSCP) subunit E4K63_00875 PF02874 ATP synthase alpha/beta family, beta-barrel domain E4K63_00875 PF00306 ATP synthase alpha/beta chain, C terminal domain E4K63_00875 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4K63_00880 PF00231 ATP synthase E4K63_00885 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4K63_00885 PF02874 ATP synthase alpha/beta family, beta-barrel domain E4K63_00890 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain E4K63_00905 PF00749 tRNA synthetases class I (E and Q), catalytic domain E4K63_00940 PF08212 Lipocalin-like domain E4K63_00950 PF04960 Glutaminase E4K63_00955 PF03951 Glutamine synthetase, beta-Grasp domain E4K63_00955 PF00120 Glutamine synthetase, catalytic domain E4K63_00965 PF02470 MlaD protein E4K63_00970 PF02405 Permease MlaE E4K63_00975 PF00005 ABC transporter E4K63_00980 PF03776 Septum formation topological specificity factor MinE E4K63_00985 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E4K63_00990 PF03775 Septum formation inhibitor MinC, C-terminal domain E4K63_00990 PF05209 Septum formation inhibitor MinC, N-terminal domain E4K63_00995 PF00471 Ribosomal protein L33 E4K63_01000 PF00830 Ribosomal L28 family E4K63_01010 PF00270 DEAD/DEAH box helicase E4K63_01010 PF17191 RecG wedge domain E4K63_01010 PF00271 Helicase conserved C-terminal domain E4K63_01035 PF05683 Fumarase C-terminus E4K63_01040 PF00293 NUDIX domain E4K63_01050 PF00860 Permease family E4K63_01055 PF06969 HemN C-terminal domain E4K63_01055 PF04055 Radical SAM superfamily E4K63_01075 PF00330 Aconitase family (aconitate hydratase) E4K63_01075 PF00694 Aconitase C-terminal domain E4K63_01085 PF00437 Type II/IV secretion system protein E4K63_01090 PF02322 Cytochrome bd terminal oxidase subunit II E4K63_01095 PF01654 Cytochrome bd terminal oxidase subunit I E4K63_01100 PF08521 Two-component sensor kinase N-terminal E4K63_01100 PF00512 His Kinase A (phospho-acceptor) domain E4K63_01100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K63_01130 PF00873 AcrB/AcrD/AcrF family E4K63_01135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4K63_01140 PF02600 Disulfide bond formation protein DsbB E4K63_01145 PF01743 Poly A polymerase head domain E4K63_01145 PF12627 Probable RNA and SrmB- binding site of polymerase A E4K63_01150 PF00664 ABC transporter transmembrane region E4K63_01150 PF00005 ABC transporter E4K63_01155 PF02606 Tetraacyldisaccharide-1-P 4'-kinase E4K63_01160 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E4K63_01160 PF01367 5'-3' exonuclease, C-terminal SAM fold E4K63_01160 PF01612 3'-5' exonuclease E4K63_01160 PF00476 DNA polymerase family A E4K63_01165 PF03309 Type III pantothenate kinase E4K63_01170 PF01676 Metalloenzyme superfamily E4K63_01175 PF01791 DeoC/LacD family aldolase E4K63_01180 PF07670 Nucleoside recognition E4K63_01180 PF01773 Na+ dependent nucleoside transporter N-terminus E4K63_01180 PF07662 Na+ dependent nucleoside transporter C-terminus E4K63_01185 PF02223 Thymidylate kinase E4K63_01190 PF03144 Elongation factor Tu domain 2 E4K63_01190 PF00009 Elongation factor Tu GTP binding domain E4K63_01190 PF16658 Class II release factor RF3, C-terminal domain E4K63_01200 PF00448 SRP54-type protein, GTPase domain E4K63_01200 PF02881 SRP54-type protein, helical bundle domain E4K63_01205 PF02371 Transposase IS116/IS110/IS902 family E4K63_01205 PF01548 Transposase E4K63_01210 PF00580 UvrD/REP helicase N-terminal domain E4K63_01210 PF13361 UvrD-like helicase C-terminal domain E4K63_01215 PF07690 Major Facilitator Superfamily E4K63_01220 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E4K63_01220 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E4K63_01225 PF01266 FAD dependent oxidoreductase E4K63_01225 PF16901 C-terminal domain of alpha-glycerophosphate oxidase E4K63_01230 PF00230 Major intrinsic protein E4K63_01240 PF00924 Mechanosensitive ion channel E4K63_01240 PF05552 Conserved TM helix E4K63_01260 PF03143 Elongation factor Tu C-terminal domain E4K63_01260 PF03144 Elongation factor Tu domain 2 E4K63_01260 PF00009 Elongation factor Tu GTP binding domain E4K63_01270 PF00584 SecE/Sec61-gamma subunits of protein translocation complex E4K63_01275 PF00467 KOW motif E4K63_01275 PF02357 Transcription termination factor nusG E4K63_01280 PF03946 Ribosomal protein L11, N-terminal domain E4K63_01280 PF00298 Ribosomal protein L11, RNA binding domain E4K63_01285 PF00687 Ribosomal protein L1p/L10e family E4K63_01290 PF00466 Ribosomal protein L10 E4K63_01295 PF16320 Ribosomal protein L7/L12 dimerisation domain E4K63_01295 PF00542 Ribosomal protein L7/L12 C-terminal domain E4K63_01300 PF10385 RNA polymerase beta subunit external 1 domain E4K63_01300 PF04563 RNA polymerase beta subunit E4K63_01300 PF04560 RNA polymerase Rpb2, domain 7 E4K63_01300 PF00562 RNA polymerase Rpb2, domain 6 E4K63_01300 PF04565 RNA polymerase Rpb2, domain 3 E4K63_01300 PF04561 RNA polymerase Rpb2, domain 2 E4K63_01305 PF05000 RNA polymerase Rpb1, domain 4 E4K63_01305 PF04983 RNA polymerase Rpb1, domain 3 E4K63_01305 PF04998 RNA polymerase Rpb1, domain 5 E4K63_01305 PF04997 RNA polymerase Rpb1, domain 1 E4K63_01305 PF00623 RNA polymerase Rpb1, domain 2 E4K63_01315 PF00814 Glycoprotease family E4K63_01325 PF02772 S-adenosylmethionine synthetase, central domain E4K63_01325 PF02773 S-adenosylmethionine synthetase, C-terminal domain E4K63_01325 PF00438 S-adenosylmethionine synthetase, N-terminal domain E4K63_01330 PF00886 Ribosomal protein S16 E4K63_01335 PF01782 RimM N-terminal domain E4K63_01335 PF05239 PRC-barrel domain E4K63_01340 PF01746 tRNA (Guanine-1)-methyltransferase E4K63_01345 PF01245 Ribosomal protein L19 E4K63_01350 PF02899 Phage integrase, N-terminal SAM-like domain E4K63_01350 PF00589 Phage integrase family E4K63_01355 PF03171 2OG-Fe(II) oxygenase superfamily E4K63_01355 PF14226 non-haem dioxygenase in morphine synthesis N-terminal E4K63_01360 PF00293 NUDIX domain E4K63_01370 PF01510 N-acetylmuramoyl-L-alanine amidase E4K63_01380 PF01751 Toprim domain E4K63_01380 PF00204 DNA gyrase B E4K63_01380 PF00986 DNA gyrase B subunit, carboxyl terminus E4K63_01380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K63_01385 PF07690 Major Facilitator Superfamily E4K63_01390 PF13360 PQQ-like domain E4K63_01400 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain E4K63_01400 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain E4K63_01400 PF01488 Shikimate / quinate 5-dehydrogenase E4K63_01405 PF00472 RF-1 domain E4K63_01405 PF03462 PCRF domain E4K63_01410 PF17827 PrmC N-terminal domain E4K63_01410 PF13847 Methyltransferase domain E4K63_01425 PF02021 Uncharacterised protein family UPF0102 E4K63_01430 PF01432 Peptidase family M3 E4K63_01435 PF04430 Protein of unknown function (DUF498/DUF598) E4K63_01460 PF00872 Transposase, Mutator family E4K63_01480 PF00009 Elongation factor Tu GTP binding domain E4K63_01490 PF01507 Phosphoadenosine phosphosulfate reductase family E4K63_01510 PF00005 ABC transporter E4K63_01510 PF00664 ABC transporter transmembrane region E4K63_01525 PF13537 Glutamine amidotransferase domain E4K63_01525 PF00733 Asparagine synthase E4K63_01555 PF01751 Toprim domain E4K63_01555 PF01131 DNA topoisomerase E4K63_01555 PF13368 Topoisomerase C-terminal repeat E4K63_01560 PF13614 AAA domain E4K63_01565 PF17762 HTH domain found in ParB protein E4K63_01565 PF02195 ParB-like nuclease domain E4K63_01570 PF00958 GMP synthase C terminal domain E4K63_01570 PF00117 Glutamine amidotransferase class-I E4K63_01570 PF02540 NAD synthase E4K63_01580 PF01728 FtsJ-like methyltransferase E4K63_01600 PF01252 Signal peptidase (SPase) II E4K63_01605 PF06827 Zinc finger found in FPG and IleRS E4K63_01605 PF08264 Anticodon-binding domain of tRNA E4K63_01605 PF00133 tRNA synthetases class I (I, L, M and V) E4K63_01610 PF01687 Riboflavin kinase E4K63_01610 PF06574 FAD synthetase E4K63_01615 PF03949 Malic enzyme, NAD binding domain E4K63_01615 PF00390 Malic enzyme, N-terminal domain E4K63_01630 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E4K63_01630 PF01926 50S ribosome-binding GTPase E4K63_01635 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E4K63_01640 PF01565 FAD binding domain E4K63_01640 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain E4K63_01650 PF08241 Methyltransferase domain E4K63_01655 PF00156 Phosphoribosyl transferase domain E4K63_01660 PF01230 HIT domain E4K63_01665 PF03109 ABC1 family E4K63_01675 PF01209 ubiE/COQ5 methyltransferase family E4K63_01685 PF02685 Glucokinase E4K63_01695 PF04279 Intracellular septation protein A E4K63_01700 PF01300 Telomere recombination E4K63_01705 PF07690 Major Facilitator Superfamily E4K63_01710 PF08264 Anticodon-binding domain of tRNA E4K63_01710 PF09334 tRNA synthetases class I (M) E4K63_01710 PF01588 Putative tRNA binding domain E4K63_01715 PF01738 Dienelactone hydrolase family E4K63_01715 PF00156 Phosphoribosyl transferase domain E4K63_01725 PF00156 Phosphoribosyl transferase domain E4K63_01725 PF01738 Dienelactone hydrolase family E4K63_01730 PF00156 Phosphoribosyl transferase domain E4K63_01730 PF05139 Erythromycin esterase E4K63_01780 PF02600 Disulfide bond formation protein DsbB E4K63_01785 PF00291 Pyridoxal-phosphate dependent enzyme E4K63_01795 PF10396 GTP-binding protein TrmE N-terminus E4K63_01795 PF01926 50S ribosome-binding GTPase E4K63_01795 PF12631 MnmE helical domain E4K63_01805 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E4K63_01815 PF00588 SpoU rRNA Methylase family E4K63_01820 PF01351 Ribonuclease HII E4K63_01830 PF00043 Glutathione S-transferase, C-terminal domain E4K63_01830 PF02798 Glutathione S-transferase, N-terminal domain E4K63_01835 PF00380 Ribosomal protein S9/S16 E4K63_01840 PF00572 Ribosomal protein L13 E4K63_01855 PF01025 GrpE E4K63_01860 PF00012 Hsp70 protein E4K63_01865 PF00684 DnaJ central domain E4K63_01865 PF01556 DnaJ C terminal domain E4K63_01865 PF00226 DnaJ domain E4K63_01920 PF02540 NAD synthase E4K63_01935 PF01548 Transposase E4K63_01935 PF02371 Transposase IS116/IS110/IS902 family E4K63_01940 PF02321 Outer membrane efflux protein E4K63_01945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4K63_01945 PF00529 HlyD membrane-fusion protein of T1SS E4K63_01950 PF07690 Major Facilitator Superfamily E4K63_01955 PF13193 AMP-binding enzyme C-terminal domain E4K63_01955 PF00501 AMP-binding enzyme E4K63_01960 PF00854 POT family E4K63_01965 PF00854 POT family E4K63_01970 PF04452 RNA methyltransferase E4K63_01990 PF00005 ABC transporter E4K63_01990 PF09383 NIL domain E4K63_01995 PF02405 Permease MlaE E4K63_02000 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase E4K63_02005 PF00849 RNA pseudouridylate synthase E4K63_02005 PF01479 S4 domain E4K63_02010 PF13525 Outer membrane lipoprotein E4K63_02015 PF01116 Fructose-bisphosphate aldolase class-II E4K63_02020 PF02887 Pyruvate kinase, alpha/beta domain E4K63_02020 PF00224 Pyruvate kinase, barrel domain E4K63_02025 PF00162 Phosphoglycerate kinase E4K63_02030 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E4K63_02030 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E4K63_02035 PF02780 Transketolase, C-terminal domain E4K63_02035 PF00456 Transketolase, thiamine diphosphate binding domain E4K63_02035 PF02779 Transketolase, pyrimidine binding domain E4K63_02045 PF01783 Ribosomal L32p protein family E4K63_02050 PF02504 Fatty acid synthesis protein E4K63_02055 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E4K63_02055 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E4K63_02060 PF00698 Acyl transferase domain E4K63_02070 PF00550 Phosphopantetheine attachment site E4K63_02075 PF00109 Beta-ketoacyl synthase, N-terminal domain E4K63_02075 PF02801 Beta-ketoacyl synthase, C-terminal domain E4K63_02080 PF01293 Phosphoenolpyruvate carboxykinase E4K63_02085 PF00749 tRNA synthetases class I (E and Q), catalytic domain E4K63_02085 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain E4K63_02100 PF01225 Mur ligase family, catalytic domain E4K63_02100 PF02875 Mur ligase family, glutamate ligase domain E4K63_02100 PF08245 Mur ligase middle domain E4K63_02105 PF00149 Calcineurin-like phosphoesterase E4K63_02110 PF00156 Phosphoribosyl transferase domain E4K63_02120 PF01225 Mur ligase family, catalytic domain E4K63_02120 PF02875 Mur ligase family, glutamate ligase domain E4K63_02120 PF08245 Mur ligase middle domain E4K63_02125 PF08032 RNA 2'-O ribose methyltransferase substrate binding E4K63_02125 PF00588 SpoU rRNA Methylase family E4K63_02130 PF03960 ArsC family E4K63_02135 PF03971 Monomeric isocitrate dehydrogenase E4K63_02145 PF00271 Helicase conserved C-terminal domain E4K63_02145 PF04408 Helicase associated domain (HA2) E4K63_02145 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold E4K63_02145 PF11898 Domain of unknown function (DUF3418) E4K63_02145 PF00270 DEAD/DEAH box helicase E4K63_02150 PF02719 Polysaccharide biosynthesis protein E4K63_02165 PF02397 Bacterial sugar transferase E4K63_02185 PF02719 Polysaccharide biosynthesis protein E4K63_02185 PF08485 Polysaccharide biosynthesis protein C-terminal E4K63_02195 PF02350 UDP-N-acetylglucosamine 2-epimerase E4K63_02200 PF00534 Glycosyl transferases group 1 E4K63_02220 PF16363 GDP-mannose 4,6 dehydratase E4K63_02250 PF02796 Helix-turn-helix domain of resolvase E4K63_02250 PF00239 Resolvase, N terminal domain E4K63_02275 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin E4K63_02280 PF01850 PIN domain E4K63_02315 PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system E4K63_02320 PF01040 UbiA prenyltransferase family E4K63_02330 PF01138 3' exoribonuclease family, domain 1 E4K63_02330 PF03725 3' exoribonuclease family, domain 2 E4K63_02340 PF01435 Peptidase family M48 E4K63_02350 PF00403 Heavy-metal-associated domain E4K63_02355 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus E4K63_02355 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus E4K63_02365 PF18073 Rubredoxin metal binding domain E4K63_02375 PF09335 SNARE associated Golgi protein E4K63_02380 PF01264 Chorismate synthase E4K63_02385 PF00080 Copper/zinc superoxide dismutase (SODC) E4K63_02390 PF01050 Mannose-6-phosphate isomerase E4K63_02390 PF00483 Nucleotidyl transferase E4K63_02395 PF00114 Pilin (bacterial filament) E4K63_02395 PF07963 Prokaryotic N-terminal methylation motif E4K63_02405 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain E4K63_02405 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E4K63_02415 PF00586 AIR synthase related protein, N-terminal domain E4K63_02415 PF02769 AIR synthase related protein, C-terminal domain E4K63_02420 PF01259 SAICAR synthetase E4K63_02425 PF00551 Formyl transferase E4K63_02430 PF00731 AIR carboxylase E4K63_02435 PF02222 ATP-grasp domain E4K63_02435 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain E4K63_02460 PF01569 PAP2 superfamily E4K63_02470 PF04362 Bacterial Fe(2+) trafficking E4K63_02475 PF04358 DsrC like protein E4K63_02480 PF02798 Glutathione S-transferase, N-terminal domain E4K63_02480 PF00043 Glutathione S-transferase, C-terminal domain E4K63_02485 PF01343 Peptidase family S49 E4K63_02485 PF08496 Peptidase family S49 N-terminal E4K63_02490 PF09115 DNA polymerase III, delta subunit, C terminal E4K63_02500 PF01985 CRS1 / YhbY (CRM) domain E4K63_02505 PF00490 Delta-aminolevulinic acid dehydratase E4K63_02510 PF00588 SpoU rRNA Methylase family E4K63_02520 PF13416 Bacterial extracellular solute-binding protein E4K63_02525 PF13520 Amino acid permease E4K63_02535 PF01594 AI-2E family transporter E4K63_02540 PF01368 DHH family E4K63_02540 PF02272 DHHA1 domain E4K63_02540 PF17768 RecJ OB domain E4K63_02550 PF00152 tRNA synthetases class II (D, K and N) E4K63_02560 PF00289 Biotin carboxylase, N-terminal domain E4K63_02560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4K63_02560 PF02785 Biotin carboxylase C-terminal domain E4K63_02565 PF00364 Biotin-requiring enzyme E4K63_02575 PF00398 Ribosomal RNA adenine dimethylase E4K63_02580 PF00639 PPIC-type PPIASE domain E4K63_02580 PF09312 SurA N-terminal domain E4K63_02585 PF03968 OstA-like protein E4K63_02585 PF04453 LPS transport system D E4K63_02590 PF00750 tRNA synthetases class I (R) E4K63_02590 PF05746 DALR anticodon binding domain E4K63_02590 PF03485 Arginyl tRNA synthetase N terminal domain E4K63_02595 PF03193 RsgA GTPase E4K63_02605 PF01119 DNA mismatch repair protein, C-terminal domain E4K63_02605 PF08676 MutL C terminal dimerisation domain E4K63_02610 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K63_02625 PF03932 CutC family E4K63_02640 PF01594 AI-2E family transporter E4K63_02645 PF00549 CoA-ligase E4K63_02645 PF02629 CoA binding domain E4K63_02650 PF08442 ATP-grasp domain E4K63_02650 PF00549 CoA-ligase E4K63_02660 PF01207 Dihydrouridine synthase (Dus) E4K63_02670 PF00204 DNA gyrase B E4K63_02670 PF00986 DNA gyrase B subunit, carboxyl terminus E4K63_02670 PF01751 Toprim domain E4K63_02670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4K63_02670 PF18053 DNA gyrase B subunit insert domain E4K63_02685 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain E4K63_02685 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain E4K63_02685 PF06827 Zinc finger found in FPG and IleRS E4K63_02690 PF13193 AMP-binding enzyme C-terminal domain E4K63_02690 PF01553 Acyltransferase E4K63_02690 PF00501 AMP-binding enzyme E4K63_02695 PF01795 MraW methylase family E4K63_02700 PF04999 Cell division protein FtsL E4K63_02705 PF03717 Penicillin-binding Protein dimerisation domain E4K63_02705 PF00905 Penicillin binding protein transpeptidase domain E4K63_02710 PF00312 Ribosomal protein S15 E4K63_02715 PF00575 S1 RNA binding domain E4K63_02715 PF00013 KH domain E4K63_02715 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain E4K63_02715 PF01138 3' exoribonuclease family, domain 1 E4K63_02715 PF03725 3' exoribonuclease family, domain 2 E4K63_02720 PF01521 Iron-sulphur cluster biosynthesis E4K63_02725 PF00793 DAHP synthetase I family E4K63_02730 PF00485 Phosphoribulokinase / Uridine kinase family E4K63_02735 PF01192 RNA polymerase Rpb6 E4K63_02745 PF05958 tRNA (Uracil-5-)-methyltransferase E4K63_02750 PF04973 Nicotinamide mononucleotide transporter E4K63_02760 PF03952 Enolase, N-terminal domain E4K63_02760 PF00113 Enolase, C-terminal TIM barrel domain E4K63_02765 PF04977 Septum formation initiator E4K63_02770 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase E4K63_02775 PF03222 Tryptophan/tyrosine permease family E4K63_02780 PF00107 Zinc-binding dehydrogenase E4K63_02780 PF08240 Alcohol dehydrogenase GroES-like domain E4K63_02785 PF00155 Aminotransferase class I and II E4K63_02835 PF01029 NusB family E4K63_02835 PF01189 16S rRNA methyltransferase RsmB/F E4K63_02840 PF00459 Inositol monophosphatase family E4K63_02845 PF03601 Conserved hypothetical protein 698 E4K63_02865 PF00482 Type II secretion system (T2SS), protein F E4K63_02870 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain E4K63_02870 PF00437 Type II/IV secretion system protein E4K63_02875 PF03009 Glycerophosphoryl diester phosphodiesterase family E4K63_02880 PF02464 Competence-damaged protein E4K63_02880 PF18146 Damage-inducible protein CinA KH domain E4K63_02880 PF00994 Probable molybdopterin binding domain E4K63_02885 PF08245 Mur ligase middle domain E4K63_02885 PF08443 RimK-like ATP-grasp domain E4K63_02885 PF02875 Mur ligase family, glutamate ligase domain E4K63_02890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4K63_02890 PF08245 Mur ligase middle domain E4K63_02890 PF02875 Mur ligase family, glutamate ligase domain E4K63_02895 PF02542 YgbB family E4K63_02910 PF03180 NLPA lipoprotein E4K63_02915 PF00005 ABC transporter E4K63_02915 PF09383 NIL domain E4K63_02920 PF02660 Glycerol-3-phosphate acyltransferase E4K63_02925 PF01702 Queuine tRNA-ribosyltransferase E4K63_02940 PF02699 Preprotein translocase subunit E4K63_02945 PF07549 SecD/SecF GG Motif E4K63_02945 PF02355 Protein export membrane protein E4K63_02945 PF13721 SecD export protein N-terminal TM region E4K63_02950 PF02355 Protein export membrane protein E4K63_02950 PF07549 SecD/SecF GG Motif E4K63_02960 PF04545 Sigma-70, region 4 E4K63_02960 PF04542 Sigma-70 region 2 E4K63_02960 PF00140 Sigma-70 factor, region 1.2 E4K63_02965 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E4K63_02975 PF00075 RNase H E4K63_02980 PF00710 Asparaginase, N-terminal E4K63_02980 PF17763 Glutaminase/Asparaginase C-terminal domain E4K63_02985 PF00484 Carbonic anhydrase E4K63_03000 PF05697 Bacterial trigger factor protein (TF) E4K63_03000 PF05698 Bacterial trigger factor protein (TF) C-terminus E4K63_03000 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4K63_03005 PF00574 Clp protease E4K63_03010 PF06689 ClpX C4-type zinc finger E4K63_03010 PF10431 C-terminal, D2-small domain, of ClpB protein E4K63_03010 PF07724 AAA domain (Cdc48 subfamily) E4K63_03015 PF00004 ATPase family associated with various cellular activities (AAA) E4K63_03015 PF02190 ATP-dependent protease La (LON) substrate-binding domain E4K63_03015 PF05362 Lon protease (S16) C-terminal proteolytic domain E4K63_03020 PF00216 Bacterial DNA-binding protein E4K63_03035 PF17209 Hfq protein E4K63_03040 PF01926 50S ribosome-binding GTPase E4K63_03040 PF13167 GTP-binding GTPase N-terminal E4K63_03040 PF16360 GTP-binding GTPase Middle Region E4K63_03045 PF01145 SPFH domain / Band 7 family E4K63_03050 PF01145 SPFH domain / Band 7 family E4K63_03055 PF01451 Low molecular weight phosphotyrosine protein phosphatase E4K63_03060 PF01926 50S ribosome-binding GTPase E4K63_03065 PF02592 Putative vitamin uptake transporter E4K63_03070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4K63_03085 PF03641 Possible lysine decarboxylase E4K63_03095 PF00571 CBS domain E4K63_03095 PF01380 SIS domain E4K63_03100 PF00834 Ribulose-phosphate 3 epimerase family E4K63_03110 PF00294 pfkB family carbohydrate kinase E4K63_03115 PF03575 Peptidase family S51 E4K63_03120 PF01112 Asparaginase E4K63_03155 PF08245 Mur ligase middle domain E4K63_03160 PF14102 Capsule biosynthesis CapC E4K63_03170 PF13291 ACT domain E4K63_03170 PF02824 TGS domain E4K63_03170 PF04607 Region found in RelA / SpoT proteins E4K63_03175 PF13662 Toprim domain E4K63_03175 PF02132 RecR protein E4K63_03180 PF02575 YbaB/EbfC DNA-binding family E4K63_03185 PF03033 Glycosyltransferase family 28 N-terminal domain E4K63_03185 PF04101 Glycosyltransferase family 28 C-terminal domain E4K63_03190 PF01597 Glycine cleavage H-protein E4K63_03200 PF00557 Metallopeptidase family M24 E4K63_03210 PF00521 DNA gyrase/topoisomerase IV, subunit A E4K63_03210 PF03989 DNA gyrase C-terminal domain, beta-propeller E4K63_03215 PF01048 Phosphorylase superfamily E4K63_03220 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4K63_03220 PF01464 Transglycosylase SLT domain E4K63_03225 PF02811 PHP domain E4K63_03225 PF01336 OB-fold nucleic acid binding domain E4K63_03225 PF14579 Helix-hairpin-helix motif E4K63_03225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E4K63_03225 PF07733 Bacterial DNA polymerase III alpha NTPase domain E4K63_03240 PF02687 FtsX-like permease family E4K63_03240 PF12704 MacB-like periplasmic core domain E4K63_03245 PF00005 ABC transporter E4K63_03255 PF00872 Transposase, Mutator family E4K63_03260 PF01548 Transposase E4K63_03260 PF02371 Transposase IS116/IS110/IS902 family E4K63_03275 PF02423 Ornithine cyclodeaminase/mu-crystallin family E4K63_03280 PF03222 Tryptophan/tyrosine permease family E4K63_03290 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain E4K63_03290 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain E4K63_03290 PF01276 Orn/Lys/Arg decarboxylase, major domain E4K63_03295 PF08669 Glycine cleavage T-protein C-terminal barrel domain E4K63_03295 PF01571 Aminomethyltransferase folate-binding domain E4K63_03300 PF01597 Glycine cleavage H-protein E4K63_03305 PF02347 Glycine cleavage system P-protein E4K63_03310 PF02347 Glycine cleavage system P-protein E4K63_03325 PF02091 Glycyl-tRNA synthetase alpha subunit E4K63_03330 PF02875 Mur ligase family, glutamate ligase domain E4K63_03330 PF01225 Mur ligase family, catalytic domain E4K63_03330 PF08245 Mur ligase middle domain E4K63_03340 PF01380 SIS domain E4K63_03345 PF00083 Sugar (and other) transporter E4K63_03350 PF01784 NIF3 (NGG1p interacting factor 3) E4K63_03355 PF04551 GcpE protein E4K63_03365 PF01321 Creatinase/Prolidase N-terminal domain E4K63_03365 PF00557 Metallopeptidase family M24 E4K63_03385 PF03695 Uncharacterised protein family (UPF0149) E4K63_03390 PF01494 FAD binding domain E4K63_03395 PF01494 FAD binding domain E4K63_03400 PF02547 Queuosine biosynthesis protein E4K63_03410 PF14437 MafB19-like deaminase E4K63_03415 PF00857 Isochorismatase family E4K63_03420 PF00999 Sodium/hydrogen exchanger family E4K63_03430 PF01571 Aminomethyltransferase folate-binding domain E4K63_03435 PF13361 UvrD-like helicase C-terminal domain E4K63_03435 PF00580 UvrD/REP helicase N-terminal domain E4K63_03440 PF00083 Sugar (and other) transporter E4K63_03455 PF10415 Fumarase C C-terminus E4K63_03455 PF00206 Lyase E4K63_03460 PF01740 STAS domain E4K63_03460 PF00916 Sulfate permease family E4K63_03465 PF11799 impB/mucB/samB family C-terminal domain E4K63_03465 PF11798 IMS family HHH motif E4K63_03465 PF00817 impB/mucB/samB family E4K63_03470 PF01965 DJ-1/PfpI family E4K63_03475 PF12848 ABC transporter E4K63_03475 PF00005 ABC transporter E4K63_03480 PF02028 BCCT, betaine/carnitine/choline family transporter E4K63_03485 PF08032 RNA 2'-O ribose methyltransferase substrate binding E4K63_03485 PF00588 SpoU rRNA Methylase family E4K63_03500 PF00011 Hsp20/alpha crystallin family E4K63_03505 PF00571 CBS domain E4K63_03520 PF01625 Peptide methionine sulfoxide reductase E4K63_03530 PF07690 Major Facilitator Superfamily E4K63_03545 PF08331 Domain of unknown function (DUF1730) E4K63_03565 PF00462 Glutaredoxin E4K63_03565 PF08534 Redoxin E4K63_03570 PF00462 Glutaredoxin E4K63_03575 PF00317 Ribonucleotide reductase, all-alpha domain E4K63_03575 PF02867 Ribonucleotide reductase, barrel domain E4K63_03575 PF03477 ATP cone domain E4K63_03580 PF00056 lactate/malate dehydrogenase, NAD binding domain E4K63_03580 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain E4K63_03590 PF03232 Ubiquinone biosynthesis protein COQ7 E4K63_03600 PF00899 ThiF family E4K63_03610 PF10417 C-terminal domain of 1-Cys peroxiredoxin E4K63_03610 PF00578 AhpC/TSA family E4K63_03620 PF08274 PhnA Zinc-Ribbon E4K63_03620 PF03831 PhnA domain E4K63_03625 PF00929 Exonuclease E4K63_03645 PF00171 Aldehyde dehydrogenase family E4K63_03655 PF01165 Ribosomal protein S21 E4K63_03660 PF09424 Yqey-like protein E4K63_03665 PF01807 CHC2 zinc finger E4K63_03665 PF13662 Toprim domain E4K63_03665 PF08275 DNA primase catalytic core, N-terminal domain E4K63_03665 PF08278 DNA primase DnaG DnaB-binding E4K63_03665 PF10410 DnaB-helicase binding domain of primase E4K63_03670 PF03979 Sigma-70 factor, region 1.1 E4K63_03670 PF00140 Sigma-70 factor, region 1.2 E4K63_03670 PF04539 Sigma-70 region 3 E4K63_03670 PF04546 Sigma-70, non-essential region E4K63_03670 PF04542 Sigma-70 region 2 E4K63_03670 PF04545 Sigma-70, region 4 E4K63_03680 PF01595 Cyclin M transmembrane N-terminal domain E4K63_03680 PF03471 Transporter associated domain E4K63_03680 PF00571 CBS domain E4K63_03690 PF06071 Protein of unknown function (DUF933) E4K63_03690 PF01926 50S ribosome-binding GTPase E4K63_03695 PF01195 Peptidyl-tRNA hydrolase E4K63_03710 PF06750 Bacterial Peptidase A24 N-terminal domain E4K63_03710 PF01478 Type IV leader peptidase family E4K63_03715 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K63_03715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4K63_03720 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family E4K63_03725 PF00291 Pyridoxal-phosphate dependent enzyme E4K63_03730 PF00301 Rubredoxin E4K63_03735 PF02245 Methylpurine-DNA glycosylase (MPG) E4K63_03745 PF02696 Uncharacterized ACR, YdiU/UPF0061 family E4K63_03755 PF13417 Glutathione S-transferase, N-terminal domain E4K63_03755 PF04399 Glutaredoxin 2, C terminal domain E4K63_03760 PF04060 Putative Fe-S cluster E4K63_03765 PF00633 Helix-hairpin-helix motif E4K63_03765 PF10576 Iron-sulfur binding domain of endonuclease III E4K63_03765 PF00730 HhH-GPD superfamily base excision DNA repair protein E4K63_03780 PF01027 Inhibitor of apoptosis-promoting Bax1 E4K63_03785 PF00270 DEAD/DEAH box helicase E4K63_03785 PF00271 Helicase conserved C-terminal domain E4K63_03785 PF03461 TRCF domain E4K63_03785 PF02559 CarD-like/TRCF domain E4K63_03785 PF17757 UvrB interaction domain E4K63_03795 PF04055 Radical SAM superfamily E4K63_03795 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family E4K63_03805 PF01709 Transcriptional regulator E4K63_03810 PF02075 Crossover junction endodeoxyribonuclease RuvC E4K63_03820 PF07499 RuvA, C-terminal domain E4K63_03820 PF01330 RuvA N terminal domain E4K63_03825 PF00331 Glycosyl hydrolase family 10 E4K63_03825 PF07859 alpha/beta hydrolase fold E4K63_03835 PF01926 50S ribosome-binding GTPase E4K63_03835 PF07650 KH domain E4K63_03850 PF01565 FAD binding domain E4K63_03850 PF02913 FAD linked oxidases, C-terminal domain E4K63_03855 PF00550 Phosphopantetheine attachment site E4K63_03855 PF00668 Condensation domain E4K63_03855 PF13193 AMP-binding enzyme C-terminal domain E4K63_03855 PF00501 AMP-binding enzyme E4K63_03855 PF00550 Phosphopantetheine attachment site E4K63_03855 PF13193 AMP-binding enzyme C-terminal domain E4K63_03855 PF00501 AMP-binding enzyme E4K63_03855 PF00668 Condensation domain E4K63_03860 PF13193 AMP-binding enzyme C-terminal domain E4K63_03860 PF00501 AMP-binding enzyme E4K63_03860 PF00668 Condensation domain E4K63_03860 PF00550 Phosphopantetheine attachment site E4K63_03860 PF00975 Thioesterase domain E4K63_03860 PF00550 Phosphopantetheine attachment site E4K63_03860 PF00668 Condensation domain E4K63_03860 PF00975 Thioesterase domain E4K63_03860 PF00501 AMP-binding enzyme E4K63_03860 PF13193 AMP-binding enzyme C-terminal domain E4K63_03870 PF00239 Resolvase, N terminal domain E4K63_03870 PF02796 Helix-turn-helix domain of resolvase E4K63_03875 PF01526 Tn3 transposase DDE domain E4K63_03875 PF13700 Domain of unknown function (DUF4158) E4K63_03885 PF05191 Adenylate kinase, active site lid E4K63_03910 PF11741 AMIN domain E4K63_03910 PF00263 Bacterial type II and III secretion system protein E4K63_03910 PF03958 Bacterial type II/III secretion system short domain E4K63_03910 PF07660 Secretin and TonB N terminus short domain E4K63_03915 PF01202 Shikimate kinase E4K63_03920 PF01761 3-dehydroquinate synthase E4K63_03930 PF03937 Flavinator of succinate dehydrogenase E4K63_03935 PF14850 DNA-binding domain of Proline dehydrogenase E4K63_03935 PF01619 Proline dehydrogenase E4K63_03935 PF00171 Aldehyde dehydrogenase family E4K63_03935 PF18327 Proline utilization A proline dehydrogenase N-terminal domain E4K63_03940 PF13520 Amino acid permease E4K63_03945 PF07690 Major Facilitator Superfamily E4K63_03950 PF04127 DNA / pantothenate metabolism flavoprotein E4K63_03950 PF02441 Flavoprotein E4K63_03955 PF00875 DNA photolyase E4K63_03955 PF03441 FAD binding domain of DNA photolyase E4K63_03960 PF00762 Ferrochelatase E4K63_04000 PF01817 Chorismate mutase type II E4K63_04000 PF00800 Prephenate dehydratase E4K63_04005 PF00255 Glutathione peroxidase E4K63_04010 PF03853 YjeF-related protein N-terminus E4K63_04010 PF01256 Carbohydrate kinase E4K63_04030 PF02272 DHHA1 domain E4K63_04030 PF01411 tRNA synthetases class II (A) E4K63_04030 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E4K63_04040 PF12404 Peptidase E4K63_04040 PF00883 Cytosol aminopeptidase family, catalytic domain E4K63_04045 PF00923 Transaldolase/Fructose-6-phosphate aldolase E4K63_04055 PF13520 Amino acid permease E4K63_04060 PF02080 TrkA-C domain E4K63_04060 PF02254 TrkA-N domain E4K63_04065 PF02082 Transcriptional regulator E4K63_04070 PF01458 Uncharacterized protein family (UPF0051) E4K63_04075 PF00005 ABC transporter E4K63_04080 PF01458 Uncharacterized protein family (UPF0051) E4K63_04100 PF00085 Thioredoxin E4K63_04115 PF00293 NUDIX domain E4K63_04120 PF02622 Uncharacterized ACR, COG1678 E4K63_04125 PF03652 Holliday junction resolvase E4K63_04130 PF08264 Anticodon-binding domain of tRNA E4K63_04130 PF00133 tRNA synthetases class I (I, L, M and V) E4K63_04130 PF13603 Leucyl-tRNA synthetase, Domain 2 E4K63_04140 PF00924 Mechanosensitive ion channel E4K63_04145 PF00692 dUTPase E4K63_04150 PF10609 NUBPL iron-transfer P-loop NTPase E4K63_04155 PF13396 Phospholipase_D-nuclease N-terminal E4K63_04155 PF13091 PLD-like domain E4K63_04165 PF03484 tRNA synthetase B5 domain E4K63_04165 PF03483 B3/4 domain E4K63_04165 PF01588 Putative tRNA binding domain E4K63_04165 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain E4K63_04165 PF03147 Ferredoxin-fold anticodon binding domain E4K63_04175 PF01409 tRNA synthetases class II core domain (F) E4K63_04175 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain E4K63_04180 PF00854 POT family E4K63_04195 PF01081 KDPG and KHG aldolase E4K63_04215 PF17864 RuvB AAA lid domain E4K63_04215 PF05491 RuvB C-terminal winged helix domain E4K63_04215 PF05496 Holliday junction DNA helicase RuvB P-loop domain E4K63_04230 PF00962 Adenosine/AMP deaminase E4K63_04250 PF00872 Transposase, Mutator family E4K63_04255 PF00270 DEAD/DEAH box helicase E4K63_04255 PF00271 Helicase conserved C-terminal domain E4K63_04260 PF01227 GTP cyclohydrolase I E4K63_04275 PF00248 Aldo/keto reductase family E4K63_04285 PF00117 Glutamine amidotransferase class-I E4K63_04290 PF00425 chorismate binding enzyme E4K63_04290 PF04715 Anthranilate synthase component I, N terminal region E4K63_04290 PF00117 Glutamine amidotransferase class-I E4K63_04295 PF13193 AMP-binding enzyme C-terminal domain E4K63_04295 PF00501 AMP-binding enzyme E4K63_04320 PF00809 Pterin binding enzyme E4K63_04320 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E4K63_04325 PF07859 alpha/beta hydrolase fold E4K63_04330 PF00202 Aminotransferase class-III E4K63_04335 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain E4K63_04335 PF02951 Prokaryotic glutathione synthetase, N-terminal domain E4K63_04340 PF00551 Formyl transferase E4K63_04340 PF02911 Formyl transferase, C-terminal domain E4K63_04355 PF10672 S-adenosylmethionine-dependent methyltransferase E4K63_04355 PF01170 Putative RNA methylase family UPF0020 E4K63_04355 PF02926 THUMP domain E4K63_04375 PF02780 Transketolase, C-terminal domain E4K63_04375 PF02779 Transketolase, pyrimidine binding domain E4K63_04375 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E4K63_04380 PF00117 Glutamine amidotransferase class-I E4K63_04380 PF02540 NAD synthase E4K63_04380 PF00958 GMP synthase C terminal domain E4K63_04400 PF01176 Translation initiation factor 1A / IF-1 E4K63_04405 PF01925 Sulfite exporter TauE/SafE E4K63_04415 PF02881 SRP54-type protein, helical bundle domain E4K63_04415 PF02978 Signal peptide binding domain E4K63_04415 PF00448 SRP54-type protein, GTPase domain E4K63_04420 PF00793 DAHP synthetase I family E4K63_04440 PF01266 FAD dependent oxidoreductase E4K63_04440 PF05430 S-adenosyl-L-methionine-dependent methyltransferase E4K63_04450 PF03658 RnfH family Ubiquitin E4K63_04455 PF03364 Polyketide cyclase / dehydrase and lipid transport E4K63_04460 PF01668 SmpB protein E4K63_04465 PF01171 PP-loop family E4K63_04470 PF00083 Sugar (and other) transporter E4K63_04470 PF08946 Osmosensory transporter coiled coil E4K63_04480 PF03372 Endonuclease/Exonuclease/phosphatase family E4K63_04490 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K63_04490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4K63_04500 PF13333 Integrase core domain E4K63_04500 PF00665 Integrase core domain E4K63_04500 PF13276 HTH-like domain E4K63_04505 PF01527 Transposase E4K63_04515 PF02601 Exonuclease VII, large subunit E4K63_04515 PF13742 OB-fold nucleic acid binding domain E4K63_04520 PF00719 Inorganic pyrophosphatase E4K63_04525 PF07943 Penicillin-binding protein 5, C-terminal domain E4K63_04525 PF00768 D-alanyl-D-alanine carboxypeptidase E4K63_04530 PF04359 Protein of unknown function (DUF493) E4K63_04535 PF03099 Biotin/lipoate A/B protein ligase family E4K63_04545 PF01386 Ribosomal L25p family E4K63_04550 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase E4K63_04550 PF14572 Phosphoribosyl synthetase-associated domain E4K63_04560 PF00814 Glycoprotease family E4K63_04570 PF01979 Amidohydrolase family E4K63_04575 PF01926 50S ribosome-binding GTPase E4K63_04585 PF00899 ThiF family E4K63_04590 PF00581 Rhodanese-like domain E4K63_04590 PF00899 ThiF family E4K63_04600 PF00682 HMGL-like E4K63_04610 PF00265 Thymidine kinase E4K63_04620 PF04055 Radical SAM superfamily E4K63_04620 PF01938 TRAM domain E4K63_04620 PF00919 Uncharacterized protein family UPF0004 E4K63_04625 PF02562 PhoH-like protein E4K63_04630 PF02130 Uncharacterized protein family UPF0054 E4K63_04635 PF00571 CBS domain E4K63_04635 PF03471 Transporter associated domain E4K63_04640 PF00795 Carbon-nitrogen hydrolase E4K63_04645 PF02646 RmuC family E4K63_04650 PF01541 GIY-YIG catalytic domain E4K63_04650 PF08459 UvrC Helix-hairpin-helix N-terminal E4K63_04650 PF02151 UvrB/uvrC motif E4K63_04655 PF01612 3'-5' exonuclease E4K63_04655 PF00570 HRDC domain E4K63_04660 PF07690 Major Facilitator Superfamily E4K63_04665 PF02092 Glycyl-tRNA synthetase beta subunit E4K63_04665 PF05746 DALR anticodon binding domain E4K63_04670 PF01026 TatD related DNase E4K63_04675 PF02463 RecF/RecN/SMC N terminal domain E4K63_04685 PF01812 5-formyltetrahydrofolate cyclo-ligase family E4K63_04695 PF09335 SNARE associated Golgi protein E4K63_04700 PF09335 SNARE associated Golgi protein E4K63_04705 PF11967 Recombination protein O N terminal E4K63_04705 PF02565 Recombination protein O C terminal E4K63_04715 PF00266 Aminotransferase class-V E4K63_04720 PF00575 S1 RNA binding domain E4K63_04720 PF10150 Ribonuclease E/G family E4K63_04720 PF12111 Polyribonucleotide phosphorylase C terminal E4K63_04725 PF01790 Prolipoprotein diacylglyceryl transferase E4K63_04730 PF00303 Thymidylate synthase E4K63_04735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4K63_04735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4K63_04740 PF09179 TilS substrate binding domain E4K63_04740 PF11734 TilS substrate C-terminal domain E4K63_04740 PF01171 PP-loop family E4K63_04745 PF00202 Aminotransferase class-III E4K63_04750 PF04055 Radical SAM superfamily E4K63_04750 PF06968 Biotin and Thiamin Synthesis associated domain E4K63_04755 PF00155 Aminotransferase class I and II E4K63_04760 PF13847 Methyltransferase domain E4K63_04770 PF02237 Biotin protein ligase C terminal domain E4K63_04770 PF08279 HTH domain E4K63_04770 PF03099 Biotin/lipoate A/B protein ligase family E4K63_04775 PF00625 Guanylate kinase E4K63_04795 PF00270 DEAD/DEAH box helicase E4K63_04795 PF00271 Helicase conserved C-terminal domain E4K63_04795 PF03880 DbpA RNA binding domain E4K63_04815 PF02348 Cytidylyltransferase E4K63_04820 PF03966 Trm112p-like protein E4K63_04825 PF01206 Sulfurtransferase TusA E4K63_04850 PF13193 AMP-binding enzyme C-terminal domain E4K63_04850 PF16177 Acetyl-coenzyme A synthetase N-terminus E4K63_04850 PF00501 AMP-binding enzyme E4K63_04855 PF00483 Nucleotidyl transferase E4K63_04860 PF16916 Dimerisation domain of Zinc Transporter E4K63_04860 PF01545 Cation efflux family E4K63_04875 PF00155 Aminotransferase class I and II E4K63_04895 PF01479 S4 domain E4K63_04895 PF00849 RNA pseudouridylate synthase E4K63_04905 PF04055 Radical SAM superfamily E4K63_04910 PF03796 DnaB-like helicase C terminal domain E4K63_04910 PF00772 DnaB-like helicase N terminal domain E4K63_04915 PF03948 Ribosomal protein L9, C-terminal domain E4K63_04915 PF01281 Ribosomal protein L9, N-terminal domain E4K63_04920 PF01084 Ribosomal protein S18 E4K63_04925 PF01250 Ribosomal protein S6 E4K63_04930 PF01218 Coproporphyrinogen III oxidase E4K63_04935 PF00266 Aminotransferase class-V E4K63_04940 PF02224 Cytidylate kinase E4K63_04950 PF08534 Redoxin E4K63_04955 PF03466 LysR substrate binding domain E4K63_04955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4K63_04975 PF01171 PP-loop family E4K63_04990 PF00348 Polyprenyl synthetase E4K63_04995 PF04751 Protein of unknown function (DUF615) E4K63_05000 PF00464 Serine hydroxymethyltransferase E4K63_05010 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system E4K63_05035 PF01479 S4 domain E4K63_05035 PF00579 tRNA synthetases class I (W and Y) E4K63_05040 PF03099 Biotin/lipoate A/B protein ligase family E4K63_05040 PF10437 Bacterial lipoate protein ligase C-terminus E4K63_05050 PF00227 Proteasome subunit E4K63_05055 PF00004 ATPase family associated with various cellular activities (AAA) E4K63_05055 PF10431 C-terminal, D2-small domain, of ClpB protein E4K63_05055 PF07724 AAA domain (Cdc48 subfamily) E4K63_05060 PF01416 tRNA pseudouridine synthase E4K63_05065 PF01048 Phosphorylase superfamily E4K63_05070 PF01557 Fumarylacetoacetate (FAA) hydrolase family E4K63_05075 PF00005 ABC transporter E4K63_05075 PF12399 Branched-chain amino acid ATP-binding cassette transporter E4K63_05095 PF01177 Asp/Glu/Hydantoin racemase E4K63_05105 PF12344 Ultra-violet resistance protein B E4K63_05105 PF02151 UvrB/uvrC motif E4K63_05105 PF00271 Helicase conserved C-terminal domain E4K63_05105 PF17757 UvrB interaction domain E4K63_05105 PF04851 Type III restriction enzyme, res subunit E4K63_05110 PF08411 Exonuclease C-terminal E4K63_05110 PF00929 Exonuclease E4K63_05125 PF13932 GidA associated domain E4K63_05125 PF01134 Glucose inhibited division protein A E4K63_05140 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E4K63_05155 PF00453 Ribosomal protein L20 E4K63_05160 PF01632 Ribosomal protein L35 E4K63_05165 PF00707 Translation initiation factor IF-3, C-terminal domain E4K63_05165 PF05198 Translation initiation factor IF-3, N-terminal domain E4K63_05170 PF03129 Anticodon binding domain E4K63_05170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4K63_05170 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E4K63_05170 PF02824 TGS domain E4K63_05185 PF01389 OmpA-like transmembrane domain E4K63_05185 PF00691 OmpA family E4K63_05195 PF00037 4Fe-4S binding domain E4K63_05200 PF01467 Cytidylyltransferase-like E4K63_05205 PF01883 Iron-sulfur cluster assembly protein E4K63_05210 PF01521 Iron-sulphur cluster biosynthesis E4K63_05215 PF00266 Aminotransferase class-V E4K63_05220 PF03315 Serine dehydratase beta chain E4K63_05220 PF03313 Serine dehydratase alpha chain E4K63_05230 PF02872 5'-nucleotidase, C-terminal domain E4K63_05230 PF00149 Calcineurin-like phosphoesterase E4K63_05235 PF00800 Prephenate dehydratase E4K63_05235 PF01817 Chorismate mutase type II E4K63_05235 PF01842 ACT domain E4K63_05250 PF13520 Amino acid permease E4K63_05255 PF00842 Alanine racemase, C-terminal domain E4K63_05255 PF01168 Alanine racemase, N-terminal domain E4K63_05285 PF00005 ABC transporter E4K63_05285 PF08402 TOBE domain E4K63_05290 PF00528 Binding-protein-dependent transport system inner membrane component E4K63_05295 PF00528 Binding-protein-dependent transport system inner membrane component E4K63_05305 PF01016 Ribosomal L27 protein E4K63_05310 PF00829 Ribosomal prokaryotic L21 protein E4K63_05320 PF07516 SecA Wing and Scaffold domain E4K63_05320 PF02810 SEC-C motif E4K63_05320 PF07517 SecA DEAD-like domain E4K63_05320 PF01043 SecA preprotein cross-linking domain E4K63_05340 PF17755 UvrA DNA-binding domain E4K63_05340 PF17760 UvrA interaction domain E4K63_05345 PF03449 Transcription elongation factor, N-terminal E4K63_05345 PF01272 Transcription elongation factor, GreA/GreB, C-term E4K63_05355 PF00342 Phosphoglucose isomerase E4K63_05365 PF00478 IMP dehydrogenase / GMP reductase domain E4K63_05365 PF00571 CBS domain E4K63_05370 PF02789 Cytosol aminopeptidase family, N-terminal domain E4K63_05370 PF00883 Cytosol aminopeptidase family, catalytic domain E4K63_05375 PF03739 Lipopolysaccharide export system permease LptF/LptG E4K63_05380 PF03739 Lipopolysaccharide export system permease LptF/LptG E4K63_05385 PF00675 Insulinase (Peptidase family M16) E4K63_05385 PF05193 Peptidase M16 inactive domain E4K63_05400 PF03458 UPF0126 domain E4K63_05405 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) E4K63_05410 PF01048 Phosphorylase superfamily E4K63_05425 PF01565 FAD binding domain E4K63_05425 PF02913 FAD linked oxidases, C-terminal domain E4K63_05425 PF13183 4Fe-4S dicluster domain E4K63_05430 PF01676 Metalloenzyme superfamily E4K63_05430 PF06415 BPG-independent PGAM N-terminus (iPGM_N) E4K63_05435 PF02403 Seryl-tRNA synthetase N-terminal domain E4K63_05435 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4K63_05460 PF02463 RecF/RecN/SMC N terminal domain E4K63_05470 PF00155 Aminotransferase class I and II E4K63_05475 PF00480 ROK family E4K63_05495 PF00005 ABC transporter E4K63_05495 PF00664 ABC transporter transmembrane region E4K63_05500 PF00005 ABC transporter E4K63_05500 PF00664 ABC transporter transmembrane region E4K63_05510 PF13808 DDE_Tnp_1-associated E4K63_05510 PF01609 Transposase DDE domain E4K63_05515 PF13808 DDE_Tnp_1-associated E4K63_05515 PF01609 Transposase DDE domain E4K63_05520 PF13808 DDE_Tnp_1-associated E4K63_05520 PF01609 Transposase DDE domain E4K63_05530 PF00375 Sodium:dicarboxylate symporter family E4K63_05535 PF01042 Endoribonuclease L-PSP E4K63_05540 PF07690 Major Facilitator Superfamily E4K63_05555 PF06150 ChaB E4K63_05570 PF00860 Permease family E4K63_05575 PF13286 Phosphohydrolase-associated domain E4K63_05575 PF01966 HD domain E4K63_05580 PF00083 Sugar (and other) transporter E4K63_05635 PF16123 Hydroxyacylglutathione hydrolase C-terminus E4K63_05635 PF00753 Metallo-beta-lactamase superfamily E4K63_05655 PF02657 Fe-S metabolism associated domain E4K63_05675 PF03129 Anticodon binding domain E4K63_05675 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4K63_05675 PF04073 Aminoacyl-tRNA editing domain E4K63_05680 PF00155 Aminotransferase class I and II E4K63_05685 PF00795 Carbon-nitrogen hydrolase E4K63_05690 PF01029 NusB family E4K63_05695 PF03692 Putative zinc- or iron-chelating domain E4K63_05710 PF00872 Transposase, Mutator family E4K63_05735 PF01925 Sulfite exporter TauE/SafE E4K63_05740 PF00753 Metallo-beta-lactamase superfamily E4K63_05740 PF16123 Hydroxyacylglutathione hydrolase C-terminus E4K63_05745 PF00581 Rhodanese-like domain E4K63_05745 PF11127 Protein of unknown function (DUF2892) E4K63_05755 PF01979 Amidohydrolase family E4K63_05770 PF02390 Putative methyltransferase E4K63_05775 PF01810 LysE type translocator E4K63_05780 PF13509 S1 domain E4K63_05780 PF17783 CvfB-like winged helix domain E4K63_05790 PF01513 ATP-NAD kinase E4K63_05795 PF00535 Glycosyl transferase family 2 E4K63_05800 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase E4K63_05805 PF01061 ABC-2 type transporter E4K63_05810 PF00005 ABC transporter E4K63_05815 PF01925 Sulfite exporter TauE/SafE E4K63_05825 PF01026 TatD related DNase E4K63_05830 PF17946 RecC C-terminal domain E4K63_05840 PF01653 NAD-dependent DNA ligase adenylation domain E4K63_05840 PF00533 BRCA1 C Terminus (BRCT) domain E4K63_05840 PF03119 NAD-dependent DNA ligase C4 zinc finger domain E4K63_05840 PF12826 Helix-hairpin-helix motif E4K63_05840 PF03120 NAD-dependent DNA ligase OB-fold domain E4K63_05865 PF03702 Anhydro-N-acetylmuramic acid kinase E4K63_05870 PF00005 ABC transporter E4K63_05870 PF12848 ABC transporter E4K63_05870 PF16326 ABC transporter C-terminal domain E4K63_05875 PF07690 Major Facilitator Superfamily E4K63_05895 PF00501 AMP-binding enzyme E4K63_05895 PF13193 AMP-binding enzyme C-terminal domain E4K63_05900 PF02770 Acyl-CoA dehydrogenase, middle domain E4K63_05900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4K63_05900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4K63_05900 PF09317 Domain of unknown function (DUF1974) E4K63_05905 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E4K63_05905 PF00378 Enoyl-CoA hydratase/isomerase E4K63_05905 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E4K63_05910 PF02803 Thiolase, C-terminal domain E4K63_05910 PF00108 Thiolase, N-terminal domain E4K63_05925 PF01925 Sulfite exporter TauE/SafE E4K63_05930 PF08348 YheO-like PAS domain E4K63_05930 PF13309 HTH domain E4K63_05940 PF18693 TRAM domain E4K63_05940 PF04055 Radical SAM superfamily E4K63_05940 PF00919 Uncharacterized protein family UPF0004 E4K63_05945 PF01389 OmpA-like transmembrane domain E4K63_05945 PF00691 OmpA family E4K63_05955 PF07676 WD40-like Beta Propeller Repeat E4K63_05965 PF02472 Biopolymer transport protein ExbD/TolR E4K63_05970 PF01618 MotA/TolQ/ExbB proton channel family E4K63_05980 PF01066 CDP-alcohol phosphatidyltransferase E4K63_05985 PF07736 Chorismate mutase type I E4K63_05990 PF02401 LytB protein E4K63_06005 PF01389 OmpA-like transmembrane domain E4K63_06005 PF00691 OmpA family E4K63_06010 PF02481 DNA recombination-mediator protein A E4K63_06010 PF17782 DprA winged helix domain E4K63_06045 PF01098 Cell cycle protein E4K63_06050 PF08245 Mur ligase middle domain E4K63_06050 PF02875 Mur ligase family, glutamate ligase domain E4K63_06055 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 E4K63_06055 PF00953 Glycosyl transferase family 4 E4K63_06065 PF00313 'Cold-shock' DNA-binding domain E4K63_06070 PF01165 Ribosomal protein S21 E4K63_06140 PF01380 SIS domain E4K63_06145 PF00132 Bacterial transferase hexapeptide (six repeats) E4K63_06145 PF12804 MobA-like NTP transferase domain E4K63_06150 PF01467 Cytidylyltransferase-like E4K63_06150 PF00293 NUDIX domain E4K63_06160 PF02666 Phosphatidylserine decarboxylase E4K63_06170 PF13538 UvrD-like helicase C-terminal domain E4K63_06175 PF12705 PD-(D/E)XK nuclease superfamily E4K63_06175 PF00580 UvrD/REP helicase N-terminal domain E4K63_06175 PF13361 UvrD-like helicase C-terminal domain E4K63_06180 PF02163 Peptidase family M50 E4K63_06190 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E4K63_06190 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E4K63_06195 PF12002 MgsA AAA+ ATPase C terminal E4K63_06195 PF00004 ATPase family associated with various cellular activities (AAA) E4K63_06195 PF16193 AAA C-terminal domain E4K63_06200 PF02371 Transposase IS116/IS110/IS902 family E4K63_06200 PF01548 Transposase E4K63_06205 PF02541 Ppx/GppA phosphatase family E4K63_06210 PF00085 Thioredoxin E4K63_06215 PF07498 Rho termination factor, N-terminal domain E4K63_06215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4K63_06215 PF07497 Rho termination factor, RNA-binding domain E4K63_06230 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family E4K63_06235 PF00491 Arginase family E4K63_06245 PF08206 Ribonuclease B OB domain E4K63_06245 PF00575 S1 RNA binding domain E4K63_06245 PF00773 RNB domain E4K63_06245 PF08461 Ribonuclease R winged-helix domain E4K63_06245 PF17876 Cold shock domain E4K63_06250 PF16198 tRNA pseudouridylate synthase B C-terminal domain E4K63_06250 PF01509 TruB family pseudouridylate synthase (N terminal domain) E4K63_06255 PF00035 Double-stranded RNA binding motif E4K63_06255 PF14622 Ribonuclease-III-like E4K63_06260 PF10502 Signal peptidase, peptidase S26 E4K63_06265 PF00486 Transcriptional regulatory protein, C terminal E4K63_06265 PF00072 Response regulator receiver domain E4K63_06270 PF14748 Pyrroline-5-carboxylate reductase dimerisation E4K63_06270 PF03807 NADP oxidoreductase coenzyme F420-dependent E4K63_06275 PF01725 Ham1 family E4K63_06280 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) E4K63_06280 PF00534 Glycosyl transferases group 1 E4K63_06285 PF00348 Polyprenyl synthetase E4K63_06290 PF01066 CDP-alcohol phosphatidyltransferase E4K63_06295 PF03976 Polyphosphate kinase 2 (PPK2) E4K63_06315 PF02684 Lipid-A-disaccharide synthetase E4K63_06320 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 E4K63_06320 PF00132 Bacterial transferase hexapeptide (six repeats) E4K63_06325 PF07977 FabA-like domain E4K63_06330 PF00132 Bacterial transferase hexapeptide (six repeats) E4K63_06330 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD E4K63_06340 PF01103 Surface antigen E4K63_06340 PF07244 Surface antigen variable number repeat E4K63_06345 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain E4K63_06345 PF13288 DXP reductoisomerase C-terminal domain E4K63_06345 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase E4K63_06350 PF00521 DNA gyrase/topoisomerase IV, subunit A E4K63_06350 PF03989 DNA gyrase C-terminal domain, beta-propeller E4K63_06355 PF03167 Uracil DNA glycosylase superfamily E4K63_06370 PF07690 Major Facilitator Superfamily E4K63_06380 PF03737 Aldolase/RraA E4K63_06385 PF00180 Isocitrate/isopropylmalate dehydrogenase E4K63_06385 PF03737 Aldolase/RraA E4K63_06395 PF07836 DmpG-like communication domain E4K63_06395 PF00682 HMGL-like E4K63_06405 PF00872 Transposase, Mutator family E4K63_06415 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K63_06415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4K63_06420 PF00364 Biotin-requiring enzyme E4K63_06420 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E4K63_06420 PF02817 e3 binding domain E4K63_06425 PF00456 Transketolase, thiamine diphosphate binding domain E4K63_06425 PF17831 Pyruvate dehydrogenase E1 component middle domain E4K63_06430 PF05159 Capsule polysaccharide biosynthesis protein E4K63_06470 PF05159 Capsule polysaccharide biosynthesis protein E4K63_06490 PF04074 YhcH/YjgK/YiaL E4K63_06505 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4K63_06505 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4K63_06510 PF03328 HpcH/HpaI aldolase/citrate lyase family E4K63_06520 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E4K63_06520 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E4K63_06520 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E4K63_06520 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E4K63_06525 PF01050 Mannose-6-phosphate isomerase E4K63_06525 PF00483 Nucleotidyl transferase E4K63_06530 PF01370 NAD dependent epimerase/dehydratase family E4K63_06535 PF16363 GDP-mannose 4,6 dehydratase E4K63_06560 PF10531 SLBB domain E4K63_06560 PF02563 Polysaccharide biosynthesis/export protein E4K63_06570 PF00005 ABC transporter E4K63_06580 PF05159 Capsule polysaccharide biosynthesis protein E4K63_06585 PF00106 short chain dehydrogenase E4K63_06590 PF00884 Sulfatase E4K63_06605 PF00067 Cytochrome P450 E4K63_06625 PF13276 HTH-like domain E4K63_06625 PF13333 Integrase core domain E4K63_06625 PF00665 Integrase core domain E4K63_06630 PF01527 Transposase E4K63_06635 PF00155 Aminotransferase class I and II E4K63_06640 PF00698 Acyl transferase domain E4K63_06640 PF08240 Alcohol dehydrogenase GroES-like domain E4K63_06640 PF14765 Polyketide synthase dehydratase E4K63_06640 PF00107 Zinc-binding dehydrogenase E4K63_06640 PF16197 Ketoacyl-synthetase C-terminal extension E4K63_06640 PF00109 Beta-ketoacyl synthase, N-terminal domain E4K63_06640 PF00550 Phosphopantetheine attachment site E4K63_06640 PF02801 Beta-ketoacyl synthase, C-terminal domain E4K63_06640 PF08659 KR domain E4K63_06645 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E4K63_06645 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E4K63_06645 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E4K63_06645 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E4K63_06655 PF01121 Dephospho-CoA kinase E4K63_06670 PF00579 tRNA synthetases class I (W and Y) E4K63_06680 PF00999 Sodium/hydrogen exchanger family E4K63_06695 PF13580 SIS domain E4K63_06715 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit E4K63_06720 PF05192 MutS domain III E4K63_06720 PF00488 MutS domain V E4K63_06720 PF05190 MutS family domain IV E4K63_06720 PF05188 MutS domain II E4K63_06720 PF01624 MutS domain I E4K63_06730 PF02556 Preprotein translocase subunit SecB E4K63_06735 PF03222 Tryptophan/tyrosine permease family E4K63_06740 PF00589 Phage integrase family E4K63_06740 PF02899 Phage integrase, N-terminal SAM-like domain E4K63_06745 PF04445 Putative SAM-dependent methyltransferase E4K63_06760 PF04607 Region found in RelA / SpoT proteins E4K63_06760 PF02824 TGS domain E4K63_06760 PF13291 ACT domain E4K63_06775 PF03222 Tryptophan/tyrosine permease family E4K63_06780 PF01556 DnaJ C terminal domain E4K63_06780 PF00226 DnaJ domain E4K63_06785 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E4K63_06785 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E4K63_06790 PF13520 Amino acid permease E4K63_06795 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E4K63_06795 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E4K63_06810 PF00106 short chain dehydrogenase E4K63_06815 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4K63_06825 PF00118 TCP-1/cpn60 chaperonin family E4K63_06830 PF00166 Chaperonin 10 Kd subunit E4K63_06850 PF03883 Peroxide stress protein YaaA E4K63_06855 PF02590 Predicted SPOUT methyltransferase E4K63_06865 PF00239 Resolvase, N terminal domain E4K63_06865 PF02796 Helix-turn-helix domain of resolvase E4K63_06875 PF05175 Methyltransferase small domain E4K63_06880 PF01406 tRNA synthetases class I (C) catalytic domain E4K63_06880 PF09190 DALR domain E4K63_06905 PF00474 Sodium:solute symporter family E4K63_06910 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded E4K63_06915 PF02129 X-Pro dipeptidyl-peptidase (S15 family) E4K63_06920 PF00324 Amino acid permease E4K63_06925 PF01569 PAP2 superfamily E4K63_06930 PF13491 4TM region of DNA translocase FtsK/SpoIIIE E4K63_06930 PF09397 Ftsk gamma domain E4K63_06930 PF01580 FtsK/SpoIIIE family E4K63_06930 PF17854 FtsK alpha domain E4K63_06935 PF03548 Outer membrane lipoprotein carrier protein LolA E4K63_06950 PF02386 Cation transport protein E4K63_06970 PF01145 SPFH domain / Band 7 family E4K63_06980 PF00667 FAD binding domain E4K63_06980 PF00258 Flavodoxin E4K63_06980 PF00175 Oxidoreductase NAD-binding domain E4K63_06985 PF01197 Ribosomal protein L31 E4K63_06990 PF04262 Glutamate-cysteine ligase E4K63_06995 PF03023 Lipid II flippase MurJ E4K63_07005 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE E4K63_07010 PF08245 Mur ligase middle domain E4K63_07015 PF01039 Carboxyl transferase domain E4K63_07015 PF17848 Acetyl-coA carboxylase zinc finger domain E4K63_07020 PF00334 Nucleoside diphosphate kinase E4K63_07025 PF06418 CTP synthase N-terminus E4K63_07025 PF00117 Glutamine amidotransferase class-I E4K63_07040 PF00183 Hsp90 protein E4K63_07050 PF01196 Ribosomal protein L17 E4K63_07055 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E4K63_07055 PF01000 RNA polymerase Rpb3/RpoA insert domain E4K63_07055 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E4K63_07060 PF01479 S4 domain E4K63_07060 PF00163 Ribosomal protein S4/S9 N-terminal domain E4K63_07065 PF00411 Ribosomal protein S11 E4K63_07070 PF00416 Ribosomal protein S13/S18 E4K63_07075 PF00444 Ribosomal protein L36 E4K63_07080 PF00344 SecY translocase E4K63_07085 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A E4K63_07090 PF00327 Ribosomal protein L30p/L7e E4K63_07095 PF00333 Ribosomal protein S5, N-terminal domain E4K63_07095 PF03719 Ribosomal protein S5, C-terminal domain E4K63_07100 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast E4K63_07105 PF00347 Ribosomal protein L6 E4K63_07110 PF00410 Ribosomal protein S8 E4K63_07115 PF00253 Ribosomal protein S14p/S29e E4K63_07120 PF00673 ribosomal L5P family C-terminus E4K63_07120 PF00281 Ribosomal protein L5 E4K63_07125 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 E4K63_07130 PF00238 Ribosomal protein L14p/L23e E4K63_07135 PF00366 Ribosomal protein S17 E4K63_07140 PF00831 Ribosomal L29 protein E4K63_07145 PF00252 Ribosomal protein L16p/L10e E4K63_07150 PF00189 Ribosomal protein S3, C-terminal domain E4K63_07150 PF07650 KH domain E4K63_07155 PF00237 Ribosomal protein L22p/L17e E4K63_07160 PF00203 Ribosomal protein S19 E4K63_07165 PF00181 Ribosomal Proteins L2, RNA binding domain E4K63_07165 PF03947 Ribosomal Proteins L2, C-terminal domain E4K63_07170 PF00276 Ribosomal protein L23 E4K63_07175 PF00573 Ribosomal protein L4/L1 family E4K63_07180 PF00297 Ribosomal protein L3 E4K63_07185 PF00338 Ribosomal protein S10p/S20e E4K63_07190 PF03764 Elongation factor G, domain IV E4K63_07190 PF00679 Elongation factor G C-terminus E4K63_07190 PF14492 Elongation Factor G, domain II E4K63_07190 PF03144 Elongation factor Tu domain 2 E4K63_07190 PF00009 Elongation factor Tu GTP binding domain E4K63_07195 PF00177 Ribosomal protein S7p/S5e E4K63_07200 PF00164 Ribosomal protein S12/S23 E4K63_07205 PF01066 CDP-alcohol phosphatidyltransferase E4K63_07210 PF00692 dUTPase E4K63_07220 PF01255 Putative undecaprenyl diphosphate synthase E4K63_07225 PF01765 Ribosome recycling factor E4K63_07230 PF00696 Amino acid kinase family E4K63_07235 PF00889 Elongation factor TS E4K63_07240 PF00318 Ribosomal protein S2 E4K63_07245 PF00186 Dihydrofolate reductase E4K63_07250 PF07690 Major Facilitator Superfamily E4K63_07255 PF01654 Cytochrome bd terminal oxidase subunit I E4K63_07260 PF02322 Cytochrome bd terminal oxidase subunit II E4K63_07280 PF00239 Resolvase, N terminal domain E4K63_07280 PF02796 Helix-turn-helix domain of resolvase E4K63_07310 PF00271 Helicase conserved C-terminal domain E4K63_07310 PF00270 DEAD/DEAH box helicase E4K63_07310 PF18319 PriA DNA helicase Cys-rich region (CRR) domain E4K63_07310 PF18074 Primosomal protein N C-terminal domain E4K63_07310 PF17764 3′ DNA-binding domain (3′BD) E4K63_07320 PF03631 Virulence factor BrkB E4K63_07325 PF03358 NADPH-dependent FMN reductase E4K63_07345 PF08402 TOBE domain E4K63_07345 PF00005 ABC transporter E4K63_07350 PF00950 ABC 3 transport family E4K63_07360 PF01494 FAD binding domain E4K63_07365 PF00156 Phosphoribosyl transferase domain E4K63_07370 PF00709 Adenylosuccinate synthetase E4K63_07375 PF01808 AICARFT/IMPCHase bienzyme E4K63_07375 PF02142 MGS-like domain E4K63_07410 PF12848 ABC transporter E4K63_07410 PF00005 ABC transporter E4K63_07415 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4K63_07415 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4K63_07425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4K63_07425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4K63_07430 PF00083 Sugar (and other) transporter E4K63_07430 PF08946 Osmosensory transporter coiled coil E4K63_07435 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system E4K63_07440 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system E4K63_07445 PF00581 Rhodanese-like domain E4K63_07450 PF02556 Preprotein translocase subunit SecB E4K63_07455 PF00154 recA bacterial DNA recombination protein E4K63_07460 PF02631 RecX family E4K63_07465 PF00436 Single-strand binding protein family E4K63_07480 PF13333 Integrase core domain E4K63_07480 PF13276 HTH-like domain E4K63_07480 PF00665 Integrase core domain E4K63_07485 PF01527 Transposase E4K63_07500 PF00871 Acetokinase family E4K63_07505 PF01515 Phosphate acetyl/butaryl transferase E4K63_07505 PF07085 DRTGG domain E4K63_07510 PF00171 Aldehyde dehydrogenase family E4K63_07530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4K63_07535 PF02875 Mur ligase family, glutamate ligase domain E4K63_07535 PF01225 Mur ligase family, catalytic domain E4K63_07535 PF08245 Mur ligase middle domain E4K63_07540 PF08501 Shikimate dehydrogenase substrate binding domain E4K63_07540 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E4K63_07540 PF01488 Shikimate / quinate 5-dehydrogenase E4K63_07590 PF00218 Indole-3-glycerol phosphate synthase E4K63_07590 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase E4K63_07595 PF01979 Amidohydrolase family E4K63_07600 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E4K63_07605 PF01180 Dihydroorotate dehydrogenase E4K63_07685 PF10458 Valyl tRNA synthetase tRNA binding arm E4K63_07685 PF00133 tRNA synthetases class I (I, L, M and V) E4K63_07685 PF08264 Anticodon-binding domain of tRNA E4K63_07715 PF00092 von Willebrand factor type A domain E4K63_07715 PF07584 Aerotolerance regulator N-terminal E4K63_07735 PF07726 ATPase family associated with various cellular activities (AAA) E4K63_07735 PF17863 AAA lid domain E4K63_07750 PF08543 Phosphomethylpyrimidine kinase E4K63_07760 PF00132 Bacterial transferase hexapeptide (six repeats) E4K63_07760 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD E4K63_07770 PF01040 UbiA prenyltransferase family E4K63_07775 PF03626 Prokaryotic Cytochrome C oxidase subunit IV E4K63_07780 PF00510 Cytochrome c oxidase subunit III E4K63_07785 PF00115 Cytochrome C and Quinol oxidase polypeptide I E4K63_07790 PF06481 COX Aromatic Rich Motif E4K63_07790 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E4K63_07800 PF03840 Preprotein translocase SecG subunit E4K63_07805 PF00121 Triosephosphate isomerase E4K63_07810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E4K63_07810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E4K63_07810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E4K63_07810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E4K63_07815 PF00156 Phosphoribosyl transferase domain E4K63_07820 PF00364 Biotin-requiring enzyme E4K63_07820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E4K63_07820 PF02817 e3 binding domain E4K63_07825 PF00676 Dehydrogenase E1 component E4K63_07825 PF02779 Transketolase, pyrimidine binding domain E4K63_07825 PF16078 2-oxoglutarate dehydrogenase N-terminus E4K63_07825 PF16870 2-oxoglutarate dehydrogenase C-terminal E4K63_07830 PF13085 2Fe-2S iron-sulfur cluster binding domain E4K63_07835 PF00890 FAD binding domain E4K63_07835 PF02910 Fumarate reductase flavoprotein C-term E4K63_07840 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E4K63_07845 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E4K63_07850 PF00285 Citrate synthase, C-terminal domain E4K63_07855 PF07690 Major Facilitator Superfamily E4K63_07860 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E4K63_07860 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E4K63_07865 PF00462 Glutaredoxin E4K63_07880 PF01336 OB-fold nucleic acid binding domain E4K63_07880 PF00152 tRNA synthetases class II (D, K and N) E4K63_07885 PF03462 PCRF domain E4K63_07885 PF00472 RF-1 domain E4K63_07890 PF00881 Nitroreductase family E4K63_07910 PF01384 Phosphate transporter family E4K63_07925 PF03746 LamB/YcsF family E4K63_07935 PF07690 Major Facilitator Superfamily E4K63_07940 PF00582 Universal stress protein family E4K63_07945 PF00679 Elongation factor G C-terminus E4K63_07945 PF06421 GTP-binding protein LepA C-terminus E4K63_07945 PF03144 Elongation factor Tu domain 2 E4K63_07945 PF00009 Elongation factor Tu GTP binding domain E4K63_07960 PF01327 Polypeptide deformylase E4K63_07965 PF00885 6,7-dimethyl-8-ribityllumazine synthase E4K63_07970 PF00925 GTP cyclohydrolase II E4K63_07970 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E4K63_07975 PF00677 Lumazine binding domain E4K63_07980 PF01872 RibD C-terminal domain E4K63_07980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E4K63_07990 PF06965 Na+/H+ antiporter 1 E4K63_07990 PF01343 Peptidase family S49 E4K63_08000 PF06965 Na+/H+ antiporter 1 E4K63_08005 PF03372 Endonuclease/Exonuclease/phosphatase family E4K63_08020 PF00037 4Fe-4S binding domain E4K63_08020 PF11953 Domain of unknown function (DUF3470) E4K63_08035 PF02580 D-Tyr-tRNA(Tyr) deacylase E4K63_08040 PF02153 Prephenate dehydrogenase E4K63_08040 PF01817 Chorismate mutase type II E4K63_08070 PF00591 Glycosyl transferase family, a/b domain E4K63_08070 PF02885 Glycosyl transferase family, helical bundle domain E4K63_08075 PF00117 Glutamine amidotransferase class-I E4K63_08080 PF00425 chorismate binding enzyme E4K63_08080 PF04715 Anthranilate synthase component I, N terminal region E4K63_08100 PF10150 Ribonuclease E/G family E4K63_08100 PF00575 S1 RNA binding domain