locus-tag class description IPN28_00020 PF07724 AAA domain (Cdc48 subfamily) IPN28_00020 PF00004 ATPase family associated with various cellular activities (AAA) IPN28_00020 PF02861 Clp amino terminal domain, pathogenicity island component IPN28_00020 PF10431 C-terminal, D2-small domain, of ClpB protein IPN28_00020 PF17871 AAA lid domain IPN28_00055 PF01554 MatE IPN28_00075 PF00850 Histone deacetylase domain IPN28_00115 PF06616 BsuBI/PstI restriction endonuclease domain IPN28_00115 PF17728 BsuBI/PstI restriction endonuclease HTH domain IPN28_00130 PF02195 ParB-like nuclease domain IPN28_00130 PF17762 HTH domain found in ParB protein IPN28_00150 PF08401 Domain of unknown function (DUF1738) IPN28_00150 PF18818 Metallopeptidase superfamily domain IPN28_00150 PF13362 Toprim domain IPN28_00190 PF02534 Type IV secretory system Conjugative DNA transfer IPN28_00235 PF13439 Glycosyltransferase Family 4 IPN28_00235 PF00534 Glycosyl transferases group 1 IPN28_00245 PF01022 Bacterial regulatory protein, arsR family IPN28_00255 PF00625 Guanylate kinase IPN28_00265 PF00398 Ribosomal RNA adenine dimethylase IPN28_00270 PF09312 SurA N-terminal domain IPN28_00270 PF00639 PPIC-type PPIASE domain IPN28_00275 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family IPN28_00285 PF13361 UvrD-like helicase C-terminal domain IPN28_00285 PF00580 UvrD/REP helicase N-terminal domain IPN28_00290 PF00072 Response regulator receiver domain IPN28_00290 PF00990 Diguanylate cyclase, GGDEF domain IPN28_00300 PF13335 Magnesium chelatase, subunit ChlI C-terminal IPN28_00300 PF01078 Magnesium chelatase, subunit ChlI IPN28_00335 PF01230 HIT domain IPN28_00340 PF02261 Aspartate decarboxylase IPN28_00350 PF00768 D-alanyl-D-alanine carboxypeptidase IPN28_00350 PF07943 Penicillin-binding protein 5, C-terminal domain IPN28_00355 PF00085 Thioredoxin IPN28_00360 PF13361 UvrD-like helicase C-terminal domain IPN28_00360 PF00580 UvrD/REP helicase N-terminal domain IPN28_00360 PF12705 PD-(D/E)XK nuclease superfamily IPN28_00370 PF00483 Nucleotidyl transferase IPN28_00375 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IPN28_00385 PF00512 His Kinase A (phospho-acceptor) domain IPN28_00385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_00390 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IPN28_00390 PF05221 S-adenosyl-L-homocysteine hydrolase IPN28_00405 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IPN28_00405 PF00391 PEP-utilising enzyme, mobile domain IPN28_00405 PF02896 PEP-utilising enzyme, TIM barrel domain IPN28_00405 PF05524 PEP-utilising enzyme, N-terminal IPN28_00405 PF00381 PTS HPr component phosphorylation site IPN28_00410 PF03668 P-loop ATPase protein family IPN28_00415 PF13756 Stimulus-sensing domain IPN28_00415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_00415 PF00672 HAMP domain IPN28_00415 PF00512 His Kinase A (phospho-acceptor) domain IPN28_00415 PF13755 Sensor N-terminal transmembrane domain IPN28_00420 PF00072 Response regulator receiver domain IPN28_00420 PF00486 Transcriptional regulatory protein, C terminal IPN28_00425 PF02875 Mur ligase family, glutamate ligase domain IPN28_00425 PF08245 Mur ligase middle domain IPN28_00430 PF01039 Carboxyl transferase domain IPN28_00435 PF00290 Tryptophan synthase alpha chain IPN28_00445 PF00291 Pyridoxal-phosphate dependent enzyme IPN28_00450 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IPN28_00455 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IPN28_00465 PF00216 Bacterial DNA-binding protein IPN28_00470 PF00575 S1 RNA binding domain IPN28_00475 PF02224 Cytidylate kinase IPN28_00485 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IPN28_00490 PF00990 Diguanylate cyclase, GGDEF domain IPN28_00490 PF03707 Bacterial signalling protein N terminal repeat IPN28_00490 PF00563 EAL domain IPN28_00500 PF01979 Amidohydrolase family IPN28_00505 PF01227 GTP cyclohydrolase I IPN28_00510 PF09190 DALR domain IPN28_00510 PF01406 tRNA synthetases class I (C) catalytic domain IPN28_00520 PF00011 Hsp20/alpha crystallin family IPN28_00535 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus IPN28_00535 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IPN28_00540 PF04552 Sigma-54, DNA binding domain IPN28_00540 PF00309 Sigma-54 factor, Activator interacting domain (AID) IPN28_00540 PF04963 Sigma-54 factor, core binding domain IPN28_00550 PF00005 ABC transporter IPN28_00555 PF01810 LysE type translocator IPN28_00570 PF01380 SIS domain IPN28_00570 PF00571 CBS domain IPN28_00575 PF00570 HRDC domain IPN28_00575 PF01612 3'-5' exonuclease IPN28_00585 PF00990 Diguanylate cyclase, GGDEF domain IPN28_00585 PF00072 Response regulator receiver domain IPN28_00615 PF13662 Toprim domain IPN28_00615 PF02132 RecR protein IPN28_00635 PF09397 Ftsk gamma domain IPN28_00635 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IPN28_00635 PF01580 FtsK/SpoIIIE family IPN28_00635 PF17854 FtsK alpha domain IPN28_00650 PF00800 Prephenate dehydratase IPN28_00650 PF01817 Chorismate mutase type II IPN28_00655 PF00034 Cytochrome c IPN28_00665 PF04055 Radical SAM superfamily IPN28_00665 PF12544 Lysine-2,3-aminomutase IPN28_00670 PF00883 Cytosol aminopeptidase family, catalytic domain IPN28_00670 PF02789 Cytosol aminopeptidase family, N-terminal domain IPN28_00685 PF04333 MlaA lipoprotein IPN28_00710 PF12848 ABC transporter IPN28_00710 PF00005 ABC transporter IPN28_00725 PF03352 Methyladenine glycosylase IPN28_00740 PF11380 Stealth protein CR2, conserved region 2 IPN28_00740 PF17103 Stealth protein CR4, conserved region 4 IPN28_00740 PF17102 Stealth protein CR3, conserved region 3 IPN28_00740 PF17101 Stealth protein CR1, conserved region 1 IPN28_00740 PF00534 Glycosyl transferases group 1 IPN28_00750 PF00155 Aminotransferase class I and II IPN28_00755 PF00571 CBS domain IPN28_00755 PF03471 Transporter associated domain IPN28_00755 PF03741 Integral membrane protein TerC family IPN28_00760 PF00575 S1 RNA binding domain IPN28_00760 PF10150 Ribonuclease E/G family IPN28_00760 PF12111 Polyribonucleotide phosphorylase C terminal IPN28_00765 PF01476 LysM domain IPN28_00765 PF08525 Opacity-associated protein A N-terminal motif IPN28_00765 PF01551 Peptidase family M23 IPN28_00785 PF00510 Cytochrome c oxidase subunit III IPN28_00790 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 IPN28_00830 PF00106 short chain dehydrogenase IPN28_00835 PF01040 UbiA prenyltransferase family IPN28_00845 PF00115 Cytochrome C and Quinol oxidase polypeptide I IPN28_00850 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IPN28_00850 PF02790 Cytochrome C oxidase subunit II, transmembrane domain IPN28_00855 PF04452 RNA methyltransferase IPN28_00860 PF01040 UbiA prenyltransferase family IPN28_00865 PF05088 Bacterial NAD-glutamate dehydrogenase IPN28_00885 PF03527 RHS protein IPN28_00890 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IPN28_00890 PF07992 Pyridine nucleotide-disulphide oxidoreductase IPN28_00895 PF13847 Methyltransferase domain IPN28_00905 PF01177 Asp/Glu/Hydantoin racemase IPN28_00910 PF00155 Aminotransferase class I and II IPN28_00915 PF13193 AMP-binding enzyme C-terminal domain IPN28_00915 PF00501 AMP-binding enzyme IPN28_00925 PF00578 AhpC/TSA family IPN28_00935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_00935 PF00512 His Kinase A (phospho-acceptor) domain IPN28_00945 PF00043 Glutathione S-transferase, C-terminal domain IPN28_00945 PF13417 Glutathione S-transferase, N-terminal domain IPN28_00950 PF01292 Prokaryotic cytochrome b561 IPN28_00955 PF04264 YceI-like domain IPN28_00970 PF01479 S4 domain IPN28_00970 PF00849 RNA pseudouridylate synthase IPN28_00975 PF14437 MafB19-like deaminase IPN28_00985 PF02844 Phosphoribosylglycinamide synthetase, N domain IPN28_00985 PF02843 Phosphoribosylglycinamide synthetase, C domain IPN28_00985 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IPN28_00990 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IPN28_00990 PF00171 Aldehyde dehydrogenase family IPN28_00990 PF01619 Proline dehydrogenase IPN28_00990 PF14850 DNA-binding domain of Proline dehydrogenase IPN28_00995 PF13742 OB-fold nucleic acid binding domain IPN28_00995 PF02601 Exonuclease VII, large subunit IPN28_01010 PF02342 TerD domain IPN28_01015 PF01699 Sodium/calcium exchanger protein IPN28_01020 PF02342 TerD domain IPN28_01025 PF00128 Alpha amylase, catalytic domain IPN28_01025 PF16657 Maltogenic Amylase, C-terminal domain IPN28_01055 PF02463 RecF/RecN/SMC N terminal domain IPN28_01065 PF02768 DNA polymerase III beta subunit, C-terminal domain IPN28_01065 PF02767 DNA polymerase III beta subunit, central domain IPN28_01065 PF00712 DNA polymerase III beta subunit, N-terminal domain IPN28_01080 PF00202 Aminotransferase class-III IPN28_01095 PF00155 Aminotransferase class I and II IPN28_01110 PF06968 Biotin and Thiamin Synthesis associated domain IPN28_01110 PF04055 Radical SAM superfamily IPN28_01115 PF00293 NUDIX domain IPN28_01115 PF02545 Maf-like protein IPN28_01120 PF11638 DnaA N-terminal domain IPN28_01120 PF08299 Bacterial dnaA protein helix-turn-helix IPN28_01120 PF00308 Bacterial dnaA protein IPN28_01125 PF01649 Ribosomal protein S20 IPN28_01135 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IPN28_01135 PF06827 Zinc finger found in FPG and IleRS IPN28_01135 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IPN28_01170 PF00118 TCP-1/cpn60 chaperonin family IPN28_01175 PF00166 Chaperonin 10 Kd subunit IPN28_01180 PF06233 Usg-like family IPN28_01185 PF00111 2Fe-2S iron-sulfur cluster binding domain IPN28_01195 PF02628 Cytochrome oxidase assembly protein IPN28_01235 PF00501 AMP-binding enzyme IPN28_01235 PF01553 Acyltransferase IPN28_01240 PF00550 Phosphopantetheine attachment site IPN28_01245 PF00109 Beta-ketoacyl synthase, N-terminal domain IPN28_01245 PF02801 Beta-ketoacyl synthase, C-terminal domain IPN28_01250 PF02618 YceG-like family IPN28_01270 PF13537 Glutamine amidotransferase domain IPN28_01270 PF00733 Asparagine synthase IPN28_01280 PF01370 NAD dependent epimerase/dehydratase family IPN28_01285 PF00534 Glycosyl transferases group 1 IPN28_01310 PF13473 Cupredoxin-like domain IPN28_01345 PF00011 Hsp20/alpha crystallin family IPN28_01350 PF00011 Hsp20/alpha crystallin family IPN28_01390 PF03922 OmpW family IPN28_01395 PF03597 Cytochrome oxidase maturation protein cbb3-type IPN28_01400 PF00403 Heavy-metal-associated domain IPN28_01410 PF13746 4Fe-4S dicluster domain IPN28_01410 PF12801 4Fe-4S binding domain IPN28_01410 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase IPN28_01415 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP IPN28_01415 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IPN28_01430 PF00115 Cytochrome C and Quinol oxidase polypeptide I IPN28_01460 PF00145 C-5 cytosine-specific DNA methylase IPN28_01485 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IPN28_01485 PF12170 DNA polymerase III tau subunit V interacting with alpha IPN28_01485 PF12169 DNA polymerase III subunits gamma and tau domain III IPN28_01490 PF02575 YbaB/EbfC DNA-binding family IPN28_01510 PF02575 YbaB/EbfC DNA-binding family IPN28_01515 PF01189 16S rRNA methyltransferase RsmB/F IPN28_01515 PF01029 NusB family IPN28_01530 PF00834 Ribulose-phosphate 3 epimerase family IPN28_01560 PF03472 Autoinducer binding domain IPN28_01560 PF00196 Bacterial regulatory proteins, luxR family IPN28_01565 PF06745 KaiC IPN28_01565 PF18073 Rubredoxin metal binding domain IPN28_01590 PF13603 Leucyl-tRNA synthetase, Domain 2 IPN28_01590 PF00133 tRNA synthetases class I (I, L, M and V) IPN28_01590 PF08264 Anticodon-binding domain of tRNA IPN28_01595 PF12100 Domain of unknown function (DUF3576) IPN28_01600 PF13609 Gram-negative porin IPN28_01605 PF01168 Alanine racemase, N-terminal domain IPN28_01615 PF00072 Response regulator receiver domain IPN28_01615 PF00486 Transcriptional regulatory protein, C terminal IPN28_01640 PF07724 AAA domain (Cdc48 subfamily) IPN28_01640 PF00004 ATPase family associated with various cellular activities (AAA) IPN28_01640 PF10431 C-terminal, D2-small domain, of ClpB protein IPN28_01645 PF03741 Integral membrane protein TerC family IPN28_01650 PF00227 Proteasome subunit IPN28_01655 PF00475 Imidazoleglycerol-phosphate dehydratase IPN28_01665 PF00815 Histidinol dehydrogenase IPN28_01670 PF00117 Glutamine amidotransferase class-I IPN28_01675 PF00583 Acetyltransferase (GNAT) family IPN28_01680 PF00977 Histidine biosynthesis protein IPN28_01685 PF00977 Histidine biosynthesis protein IPN28_01690 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase IPN28_01705 PF02195 ParB-like nuclease domain IPN28_01705 PF17762 HTH domain found in ParB protein IPN28_01710 PF13614 AAA domain IPN28_01715 PF02527 rRNA small subunit methyltransferase G IPN28_01720 PF01134 Glucose inhibited division protein A IPN28_01720 PF13932 GidA associated domain IPN28_01725 PF12631 MnmE helical domain IPN28_01725 PF10396 GTP-binding protein TrmE N-terminus IPN28_01725 PF01926 50S ribosome-binding GTPase IPN28_01765 PF07498 Rho termination factor, N-terminal domain IPN28_01765 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IPN28_01765 PF07497 Rho termination factor, RNA-binding domain IPN28_01770 PF03653 Uncharacterised protein family (UPF0093) IPN28_01785 PF00762 Ferrochelatase IPN28_01790 PF01208 Uroporphyrinogen decarboxylase (URO-D) IPN28_01810 PF00929 Exonuclease IPN28_01815 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IPN28_01815 PF00117 Glutamine amidotransferase class-I IPN28_01820 PF01121 Dephospho-CoA kinase IPN28_01825 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IPN28_01825 PF01488 Shikimate / quinate 5-dehydrogenase IPN28_01825 PF08501 Shikimate dehydrogenase substrate binding domain IPN28_01830 PF02545 Maf-like protein IPN28_01835 PF03618 Kinase/pyrophosphorylase IPN28_01840 PF02556 Preprotein translocase subunit SecB IPN28_01845 PF04186 FxsA cytoplasmic membrane protein IPN28_01855 PF03562 MltA specific insert domain IPN28_01855 PF06725 3D domain IPN28_01885 PF00248 Aldo/keto reductase family IPN28_01975 PF00437 Type II/IV secretion system protein IPN28_02005 PF10442 FIST C domain IPN28_02005 PF08495 FIST N domain IPN28_02010 PF04011 LemA family IPN28_02015 PF01435 Peptidase family M48 IPN28_02020 PF01209 ubiE/COQ5 methyltransferase family IPN28_02025 PF01027 Inhibitor of apoptosis-promoting Bax1 IPN28_02030 PF01741 Large-conductance mechanosensitive channel, MscL IPN28_02040 PF00589 Phage integrase family IPN28_02040 PF13356 Arm DNA-binding domain IPN28_02050 PF12728 Helix-turn-helix domain IPN28_02055 PF13362 Toprim domain IPN28_02055 PF18818 Metallopeptidase superfamily domain IPN28_02055 PF08401 Domain of unknown function (DUF1738) IPN28_02060 PF06745 KaiC IPN28_02060 PF18073 Rubredoxin metal binding domain IPN28_02135 PF10544 T5orf172 domain IPN28_02175 PF00919 Uncharacterized protein family UPF0004 IPN28_02175 PF18693 TRAM domain IPN28_02175 PF04055 Radical SAM superfamily IPN28_02190 PF02673 Bacitracin resistance protein BacA IPN28_02210 PF07690 Major Facilitator Superfamily IPN28_02225 PF07237 Protein of unknown function (DUF1428) IPN28_02235 PF01022 Bacterial regulatory protein, arsR family IPN28_02240 PF02622 Uncharacterized ACR, COG1678 IPN28_02245 PF05193 Peptidase M16 inactive domain IPN28_02245 PF00675 Insulinase (Peptidase family M16) IPN28_02255 PF00291 Pyridoxal-phosphate dependent enzyme IPN28_02255 PF14821 Threonine synthase N terminus IPN28_02270 PF01174 SNO glutamine amidotransferase family IPN28_02295 PF01680 SOR/SNZ family IPN28_02325 PF10127 RNA repair pathway DNA polymerase beta family IPN28_02345 PF00117 Glutamine amidotransferase class-I IPN28_02345 PF02540 NAD synthase IPN28_02345 PF00958 GMP synthase C terminal domain IPN28_02360 PF02219 Methylenetetrahydrofolate reductase IPN28_02370 PF01717 Cobalamin-independent synthase, Catalytic domain IPN28_02370 PF08267 Cobalamin-independent synthase, N-terminal domain IPN28_02380 PF01029 NusB family IPN28_02380 PF01189 16S rRNA methyltransferase RsmB/F IPN28_02415 PF00478 IMP dehydrogenase / GMP reductase domain IPN28_02415 PF00571 CBS domain IPN28_02425 PF01728 FtsJ-like methyltransferase IPN28_02450 PF01220 Dehydroquinase class II IPN28_02455 PF00364 Biotin-requiring enzyme IPN28_02460 PF02785 Biotin carboxylase C-terminal domain IPN28_02460 PF00289 Biotin carboxylase, N-terminal domain IPN28_02460 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IPN28_02465 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IPN28_02515 PF00004 ATPase family associated with various cellular activities (AAA) IPN28_02515 PF07724 AAA domain (Cdc48 subfamily) IPN28_02515 PF17871 AAA lid domain IPN28_02515 PF02861 Clp amino terminal domain, pathogenicity island component IPN28_02515 PF10431 C-terminal, D2-small domain, of ClpB protein IPN28_02520 PF17284 Spermidine synthase tetramerisation domain IPN28_02530 PF02617 ATP-dependent Clp protease adaptor protein ClpS IPN28_02595 PF01494 FAD binding domain IPN28_02600 PF00468 Ribosomal protein L34 IPN28_02605 PF00825 Ribonuclease P IPN28_02610 PF01809 Putative membrane protein insertion efficiency factor IPN28_02615 PF14849 YidC periplasmic domain IPN28_02615 PF02096 60Kd inner membrane protein IPN28_02620 PF01926 50S ribosome-binding GTPase IPN28_02625 PF02646 RmuC family IPN28_02630 PF01327 Polypeptide deformylase IPN28_02635 PF02911 Formyl transferase, C-terminal domain IPN28_02635 PF00551 Formyl transferase IPN28_02640 PF01416 tRNA pseudouridine synthase IPN28_02655 PF01546 Peptidase family M20/M25/M40 IPN28_02655 PF07687 Peptidase dimerisation domain IPN28_02665 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal IPN28_02665 PF14602 Hexapeptide repeat of succinyl-transferase IPN28_02665 PF00132 Bacterial transferase hexapeptide (six repeats) IPN28_02680 PF12804 MobA-like NTP transferase domain IPN28_02680 PF00132 Bacterial transferase hexapeptide (six repeats) IPN28_02695 PF01380 SIS domain IPN28_02700 PF00145 C-5 cytosine-specific DNA methylase IPN28_02730 PF00108 Thiolase, N-terminal domain IPN28_02730 PF02803 Thiolase, C-terminal domain IPN28_02750 PF00378 Enoyl-CoA hydratase/isomerase IPN28_02750 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IPN28_02750 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IPN28_02785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IPN28_02785 PF02770 Acyl-CoA dehydrogenase, middle domain IPN28_02785 PF12806 Acetyl-CoA dehydrogenase C-terminal like IPN28_02785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IPN28_02795 PF00004 ATPase family associated with various cellular activities (AAA) IPN28_02795 PF17866 AAA lid domain IPN28_02820 PF02630 SCO1/SenC IPN28_02825 PF01964 Radical SAM ThiC family IPN28_02825 PF13667 ThiC-associated domain IPN28_02830 PF08274 PhnA Zinc-Ribbon IPN28_02830 PF03831 PhnA domain IPN28_02880 PF08534 Redoxin IPN28_02910 PF01113 Dihydrodipicolinate reductase, N-terminus IPN28_02910 PF05173 Dihydrodipicolinate reductase, C-terminus IPN28_02925 PF02562 PhoH-like protein IPN28_02935 PF00291 Pyridoxal-phosphate dependent enzyme IPN28_02935 PF13291 ACT domain IPN28_02945 PF00909 Ammonium Transporter Family IPN28_02950 PF00268 Ribonucleotide reductase, small chain IPN28_02965 PF01641 SelR domain IPN28_02970 PF00317 Ribonucleotide reductase, all-alpha domain IPN28_02970 PF02867 Ribonucleotide reductase, barrel domain IPN28_02970 PF03477 ATP cone domain IPN28_02975 PF00224 Pyruvate kinase, barrel domain IPN28_02975 PF02887 Pyruvate kinase, alpha/beta domain IPN28_02995 PF13419 Haloacid dehalogenase-like hydrolase IPN28_03005 PF01541 GIY-YIG catalytic domain IPN28_03005 PF08459 UvrC Helix-hairpin-helix N-terminal IPN28_03005 PF02151 UvrB/uvrC motif IPN28_03020 PF00698 Acyl transferase domain IPN28_03030 PF01250 Ribosomal protein S6 IPN28_03035 PF01084 Ribosomal protein S18 IPN28_03040 PF01281 Ribosomal protein L9, N-terminal domain IPN28_03040 PF03948 Ribosomal protein L9, C-terminal domain IPN28_03045 PF00772 DnaB-like helicase N terminal domain IPN28_03045 PF03796 DnaB-like helicase C terminal domain IPN28_03050 PF00842 Alanine racemase, C-terminal domain IPN28_03050 PF01168 Alanine racemase, N-terminal domain IPN28_03065 PF02405 Permease MlaE IPN28_03070 PF00005 ABC transporter IPN28_03075 PF00912 Transglycosylase IPN28_03075 PF17092 Penicillin-binding protein OB-like domain IPN28_03075 PF00905 Penicillin binding protein transpeptidase domain IPN28_03090 PF01544 CorA-like Mg2+ transporter protein IPN28_03095 PF12795 Mechanosensitive ion channel porin domain IPN28_03095 PF00924 Mechanosensitive ion channel IPN28_03095 PF12794 Mechanosensitive ion channel inner membrane domain 1 IPN28_03115 PF00255 Glutathione peroxidase IPN28_03135 PF09704 CRISPR-associated protein (Cas_Cas5) IPN28_03155 PF01867 CRISPR associated protein Cas1 IPN28_03160 PF09827 CRISPR associated protein Cas2 IPN28_03185 PF13356 Arm DNA-binding domain IPN28_03185 PF00589 Phage integrase family IPN28_03195 PF02515 CoA-transferase family III IPN28_03215 PF04073 Aminoacyl-tRNA editing domain IPN28_03220 PF00085 Thioredoxin IPN28_03225 PF03966 Trm112p-like protein IPN28_03245 PF08502 LeuA allosteric (dimerisation) domain IPN28_03245 PF00682 HMGL-like IPN28_03280 PF00484 Carbonic anhydrase IPN28_03285 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IPN28_03295 PF03167 Uracil DNA glycosylase superfamily IPN28_03305 PF01192 RNA polymerase Rpb6 IPN28_03310 PF02824 TGS domain IPN28_03310 PF04607 Region found in RelA / SpoT proteins IPN28_03310 PF13291 ACT domain IPN28_03315 PF00156 Phosphoribosyl transferase domain IPN28_03320 PF01648 4'-phosphopantetheinyl transferase superfamily IPN28_03325 PF10502 Signal peptidase, peptidase S26 IPN28_03330 PF14622 Ribonuclease-III-like IPN28_03330 PF00035 Double-stranded RNA binding motif IPN28_03335 PF07650 KH domain IPN28_03335 PF01926 50S ribosome-binding GTPase IPN28_03360 PF14245 Type IV pilin PilA IPN28_03360 PF07963 Prokaryotic N-terminal methylation motif IPN28_03365 PF00313 'Cold-shock' DNA-binding domain IPN28_03370 PF13193 AMP-binding enzyme C-terminal domain IPN28_03370 PF00501 AMP-binding enzyme IPN28_03390 PF03147 Ferredoxin-fold anticodon binding domain IPN28_03390 PF03484 tRNA synthetase B5 domain IPN28_03390 PF01588 Putative tRNA binding domain IPN28_03390 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IPN28_03390 PF03483 B3/4 domain IPN28_03400 PF00814 Glycoprotease family IPN28_03400 PF00583 Acetyltransferase (GNAT) family IPN28_03405 PF01409 tRNA synthetases class II core domain (F) IPN28_03405 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IPN28_03430 PF00453 Ribosomal protein L20 IPN28_03435 PF01632 Ribosomal protein L35 IPN28_03445 PF01367 5'-3' exonuclease, C-terminal SAM fold IPN28_03445 PF00476 DNA polymerase family A IPN28_03445 PF01612 3'-5' exonuclease IPN28_03445 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IPN28_03455 PF01479 S4 domain IPN28_03455 PF00849 RNA pseudouridylate synthase IPN28_03465 PF00588 SpoU rRNA Methylase family IPN28_03465 PF08032 RNA 2'-O ribose methyltransferase substrate binding IPN28_03500 PF13657 HipA N-terminal domain IPN28_03500 PF07804 HipA-like C-terminal domain IPN28_03525 PF00873 AcrB/AcrD/AcrF family IPN28_03565 PF08240 Alcohol dehydrogenase GroES-like domain IPN28_03565 PF00107 Zinc-binding dehydrogenase IPN28_03570 PF01909 Nucleotidyltransferase domain IPN28_03570 PF08335 GlnD PII-uridylyltransferase IPN28_03570 PF01966 HD domain IPN28_03580 PF01545 Cation efflux family IPN28_03580 PF16916 Dimerisation domain of Zinc Transporter IPN28_03590 PF01467 Cytidylyltransferase-like IPN28_03590 PF00294 pfkB family carbohydrate kinase IPN28_03615 PF07943 Penicillin-binding protein 5, C-terminal domain IPN28_03615 PF00768 D-alanyl-D-alanine carboxypeptidase IPN28_03630 PF00596 Class II Aldolase and Adducin N-terminal domain IPN28_03635 PF03079 ARD/ARD' family IPN28_03640 PF13419 Haloacid dehalogenase-like hydrolase IPN28_03645 PF01008 Initiation factor 2 subunit family IPN28_03695 PF01555 DNA methylase IPN28_03715 PF12804 MobA-like NTP transferase domain IPN28_03720 PF02391 MoaE protein IPN28_03730 PF01967 MoaC family IPN28_03730 PF00994 Probable molybdopterin binding domain IPN28_03735 PF04055 Radical SAM superfamily IPN28_03735 PF06463 Molybdenum Cofactor Synthesis C IPN28_03760 PF02665 Nitrate reductase gamma subunit IPN28_03765 PF02613 Nitrate reductase delta subunit IPN28_03775 PF14711 Respiratory nitrate reductase beta C-terminal IPN28_03775 PF13247 4Fe-4S dicluster domain IPN28_03780 PF14710 Respiratory nitrate reductase alpha N-terminal IPN28_03780 PF01568 Molydopterin dinucleotide binding domain IPN28_03780 PF00384 Molybdopterin oxidoreductase IPN28_03785 PF07690 Major Facilitator Superfamily IPN28_03790 PF07690 Major Facilitator Superfamily IPN28_03795 PF13545 Crp-like helix-turn-helix domain IPN28_03795 PF00027 Cyclic nucleotide-binding domain IPN28_03800 PF00994 Probable molybdopterin binding domain IPN28_03800 PF03453 MoeA N-terminal region (domain I and II) IPN28_03800 PF03454 MoeA C-terminal region (domain IV) IPN28_03810 PF01136 Peptidase family U32 IPN28_03820 PF01266 FAD dependent oxidoreductase IPN28_03840 PF04055 Radical SAM superfamily IPN28_03855 PF03143 Elongation factor Tu C-terminal domain IPN28_03855 PF03144 Elongation factor Tu domain 2 IPN28_03855 PF00009 Elongation factor Tu GTP binding domain IPN28_03890 PF00005 ABC transporter IPN28_03890 PF03412 Peptidase C39 family IPN28_03890 PF00664 ABC transporter transmembrane region IPN28_03895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IPN28_03895 PF00529 HlyD membrane-fusion protein of T1SS IPN28_03900 PF08669 Glycine cleavage T-protein C-terminal barrel domain IPN28_03900 PF01571 Aminomethyltransferase folate-binding domain IPN28_03905 PF01597 Glycine cleavage H-protein IPN28_03910 PF02347 Glycine cleavage system P-protein IPN28_03925 PF00266 Aminotransferase class-V IPN28_03940 PF00467 KOW motif IPN28_03940 PF02357 Transcription termination factor nusG IPN28_03960 PF00298 Ribosomal protein L11, RNA binding domain IPN28_03960 PF03946 Ribosomal protein L11, N-terminal domain IPN28_03965 PF00687 Ribosomal protein L1p/L10e family IPN28_03975 PF00466 Ribosomal protein L10 IPN28_03980 PF00542 Ribosomal protein L7/L12 C-terminal domain IPN28_03980 PF16320 Ribosomal protein L7/L12 dimerisation domain IPN28_03985 PF10385 RNA polymerase beta subunit external 1 domain IPN28_03985 PF04561 RNA polymerase Rpb2, domain 2 IPN28_03985 PF04563 RNA polymerase beta subunit IPN28_03985 PF00562 RNA polymerase Rpb2, domain 6 IPN28_03985 PF04560 RNA polymerase Rpb2, domain 7 IPN28_03985 PF04565 RNA polymerase Rpb2, domain 3 IPN28_03995 PF00623 RNA polymerase Rpb1, domain 2 IPN28_03995 PF04983 RNA polymerase Rpb1, domain 3 IPN28_03995 PF04998 RNA polymerase Rpb1, domain 5 IPN28_03995 PF04997 RNA polymerase Rpb1, domain 1 IPN28_03995 PF05000 RNA polymerase Rpb1, domain 4 IPN28_04005 PF00164 Ribosomal protein S12/S23 IPN28_04010 PF00177 Ribosomal protein S7p/S5e IPN28_04015 PF00679 Elongation factor G C-terminus IPN28_04015 PF14492 Elongation Factor G, domain II IPN28_04015 PF03764 Elongation factor G, domain IV IPN28_04015 PF00009 Elongation factor Tu GTP binding domain IPN28_04015 PF03144 Elongation factor Tu domain 2 IPN28_04020 PF00009 Elongation factor Tu GTP binding domain IPN28_04020 PF03144 Elongation factor Tu domain 2 IPN28_04020 PF03143 Elongation factor Tu C-terminal domain IPN28_04025 PF00338 Ribosomal protein S10p/S20e IPN28_04035 PF00297 Ribosomal protein L3 IPN28_04040 PF00573 Ribosomal protein L4/L1 family IPN28_04045 PF00276 Ribosomal protein L23 IPN28_04050 PF00181 Ribosomal Proteins L2, RNA binding domain IPN28_04050 PF03947 Ribosomal Proteins L2, C-terminal domain IPN28_04055 PF00203 Ribosomal protein S19 IPN28_04060 PF00237 Ribosomal protein L22p/L17e IPN28_04065 PF07650 KH domain IPN28_04065 PF00189 Ribosomal protein S3, C-terminal domain IPN28_04070 PF00252 Ribosomal protein L16p/L10e IPN28_04075 PF00831 Ribosomal L29 protein IPN28_04080 PF00366 Ribosomal protein S17 IPN28_04085 PF00238 Ribosomal protein L14p/L23e IPN28_04090 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IPN28_04090 PF00467 KOW motif IPN28_04095 PF00281 Ribosomal protein L5 IPN28_04095 PF00673 ribosomal L5P family C-terminus IPN28_04100 PF00253 Ribosomal protein S14p/S29e IPN28_04105 PF00410 Ribosomal protein S8 IPN28_04110 PF00347 Ribosomal protein L6 IPN28_04115 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IPN28_04120 PF00333 Ribosomal protein S5, N-terminal domain IPN28_04120 PF03719 Ribosomal protein S5, C-terminal domain IPN28_04125 PF00327 Ribosomal protein L30p/L7e IPN28_04130 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IPN28_04145 PF00344 SecY translocase IPN28_04155 PF01112 Asparaginase IPN28_04160 PF00416 Ribosomal protein S13/S18 IPN28_04165 PF00411 Ribosomal protein S11 IPN28_04170 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IPN28_04170 PF01000 RNA polymerase Rpb3/RpoA insert domain IPN28_04170 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IPN28_04175 PF01196 Ribosomal protein L17 IPN28_04180 PF02569 Pantoate-beta-alanine ligase IPN28_04185 PF02548 Ketopantoate hydroxymethyltransferase IPN28_04190 PF13180 PDZ domain IPN28_04205 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IPN28_04205 PF03129 Anticodon binding domain IPN28_04210 PF06965 Na+/H+ antiporter 1 IPN28_04210 PF01343 Peptidase family S49 IPN28_04230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IPN28_04230 PF02770 Acyl-CoA dehydrogenase, middle domain IPN28_04230 PF12806 Acetyl-CoA dehydrogenase C-terminal like IPN28_04230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IPN28_04250 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IPN28_04250 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IPN28_04250 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IPN28_04255 PF01507 Phosphoadenosine phosphosulfate reductase family IPN28_04260 PF00009 Elongation factor Tu GTP binding domain IPN28_04265 PF00459 Inositol monophosphatase family IPN28_04290 PF08281 Sigma-70, region 4 IPN28_04290 PF04542 Sigma-70 region 2 IPN28_04295 PF00092 von Willebrand factor type A domain IPN28_04295 PF12034 Domain of unknown function (DUF3520) IPN28_04295 PF12450 von Willebrand factor IPN28_04305 PF05114 Protein of unknown function (DUF692) IPN28_04315 PF00005 ABC transporter IPN28_04315 PF16326 ABC transporter C-terminal domain IPN28_04325 PF07063 Domain of unknown function (DUF1338) IPN28_04330 PF00171 Aldehyde dehydrogenase family IPN28_04345 PF03435 Saccharopine dehydrogenase NADP binding domain IPN28_04345 PF16653 Saccharopine dehydrogenase C-terminal domain IPN28_04355 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IPN28_04360 PF00106 short chain dehydrogenase IPN28_04375 PF01048 Phosphorylase superfamily IPN28_04380 PF01740 STAS domain IPN28_04380 PF00916 Sulfate permease family IPN28_04390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IPN28_04390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IPN28_04395 PF00175 Oxidoreductase NAD-binding domain IPN28_04395 PF00667 FAD binding domain IPN28_04395 PF00258 Flavodoxin IPN28_04400 PF01507 Phosphoadenosine phosphosulfate reductase family IPN28_04405 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IPN28_04405 PF14824 Sirohaem biosynthesis protein central IPN28_04405 PF10414 Sirohaem synthase dimerisation region IPN28_04425 PF00795 Carbon-nitrogen hydrolase IPN28_04430 PF04371 Porphyromonas-type peptidyl-arginine deiminase IPN28_04440 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IPN28_04440 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IPN28_04450 PF00171 Aldehyde dehydrogenase family IPN28_04500 PF03062 MBOAT, membrane-bound O-acyltransferase family IPN28_04505 PF00550 Phosphopantetheine attachment site IPN28_04520 PF02861 Clp amino terminal domain, pathogenicity island component IPN28_04520 PF10431 C-terminal, D2-small domain, of ClpB protein IPN28_04520 PF17871 AAA lid domain IPN28_04520 PF07724 AAA domain (Cdc48 subfamily) IPN28_04520 PF00004 ATPase family associated with various cellular activities (AAA) IPN28_04545 PF07995 Glucose / Sorbosone dehydrogenase IPN28_04550 PF00207 Alpha-2-macroglobulin family IPN28_04550 PF07678 A-macroglobulin TED domain IPN28_04550 PF07703 Alpha-2-macroglobulin bait region domain IPN28_04550 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain IPN28_04550 PF01835 MG2 domain IPN28_04570 PF03631 Virulence factor BrkB IPN28_04585 PF00180 Isocitrate/isopropylmalate dehydrogenase IPN28_04590 PF01584 CheW-like domain IPN28_04590 PF02895 Signal transducing histidine kinase, homodimeric domain IPN28_04590 PF01627 Hpt domain IPN28_04590 PF07194 P2 response regulator binding domain IPN28_04590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_04615 PF00072 Response regulator receiver domain IPN28_04625 PF00593 TonB dependent receptor IPN28_04625 PF07715 TonB-dependent Receptor Plug Domain IPN28_04630 PF00512 His Kinase A (phospho-acceptor) domain IPN28_04630 PF08448 PAS fold IPN28_04630 PF13188 PAS domain IPN28_04630 PF00072 Response regulator receiver domain IPN28_04630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_04635 PF00158 Sigma-54 interaction domain IPN28_04635 PF00072 Response regulator receiver domain IPN28_04645 PF00072 Response regulator receiver domain IPN28_04655 PF00534 Glycosyl transferases group 1 IPN28_04655 PF13439 Glycosyltransferase Family 4 IPN28_04660 PF00535 Glycosyl transferase family 2 IPN28_04665 PF00535 Glycosyl transferase family 2 IPN28_04680 PF08241 Methyltransferase domain IPN28_04710 PF06508 Queuosine biosynthesis protein QueC IPN28_04715 PF01242 6-pyruvoyl tetrahydropterin synthase IPN28_04720 PF04055 Radical SAM superfamily IPN28_04725 PF14489 QueF-like protein IPN28_04735 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family IPN28_04750 PF17863 AAA lid domain IPN28_04750 PF07726 ATPase family associated with various cellular activities (AAA) IPN28_04755 PF01882 Protein of unknown function DUF58 IPN28_04765 PF00092 von Willebrand factor type A domain IPN28_04770 PF07584 Aerotolerance regulator N-terminal IPN28_04770 PF00092 von Willebrand factor type A domain IPN28_04800 PF00005 ABC transporter IPN28_04810 PF16859 Tetracyclin repressor-like, C-terminal domain IPN28_04810 PF00440 Bacterial regulatory proteins, tetR family IPN28_04820 PF08447 PAS fold IPN28_04820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPN28_04830 PF02678 Pirin IPN28_04830 PF17954 Quercetinase C-terminal cupin domain IPN28_04835 PF00679 Elongation factor G C-terminus IPN28_04835 PF03144 Elongation factor Tu domain 2 IPN28_04835 PF00009 Elongation factor Tu GTP binding domain IPN28_04845 PF06826 Predicted Permease Membrane Region IPN28_04845 PF02080 TrkA-C domain IPN28_04850 PF04055 Radical SAM superfamily IPN28_04860 PF00912 Transglycosylase IPN28_04860 PF06832 Penicillin-Binding Protein C-terminus Family IPN28_04860 PF00905 Penicillin binding protein transpeptidase domain IPN28_04875 PF01384 Phosphate transporter family IPN28_04880 PF01865 Protein of unknown function DUF47 IPN28_04890 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IPN28_04890 PF00326 Prolyl oligopeptidase family IPN28_04915 PF03485 Arginyl tRNA synthetase N terminal domain IPN28_04915 PF05746 DALR anticodon binding domain IPN28_04915 PF00750 tRNA synthetases class I (R) IPN28_04920 PF03641 Possible lysine decarboxylase IPN28_04925 PF01161 Phosphatidylethanolamine-binding protein IPN28_04930 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain IPN28_04930 PF00753 Metallo-beta-lactamase superfamily IPN28_04930 PF10996 Beta-Casp domain IPN28_04940 PF05853 beta-keto acid cleavage enzyme IPN28_04950 PF00204 DNA gyrase B IPN28_04950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_04950 PF00986 DNA gyrase B subunit, carboxyl terminus IPN28_04950 PF01751 Toprim domain IPN28_04955 PF00155 Aminotransferase class I and II IPN28_04960 PF01272 Transcription elongation factor, GreA/GreB, C-term IPN28_04960 PF03449 Transcription elongation factor, N-terminal IPN28_04975 PF05731 TROVE domain IPN28_04990 PF00005 ABC transporter IPN28_04990 PF00664 ABC transporter transmembrane region IPN28_05000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IPN28_05010 PF14572 Phosphoribosyl synthetase-associated domain IPN28_05010 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IPN28_05015 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IPN28_05035 PF00529 HlyD membrane-fusion protein of T1SS IPN28_05035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IPN28_05040 PF00873 AcrB/AcrD/AcrF family IPN28_05045 PF02321 Outer membrane efflux protein IPN28_05050 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 IPN28_05070 PF00005 ABC transporter IPN28_05070 PF12848 ABC transporter IPN28_05085 PF08544 GHMP kinases C terminal IPN28_05085 PF00288 GHMP kinases N terminal domain IPN28_05100 PF03167 Uracil DNA glycosylase superfamily IPN28_05105 PF01464 Transglycosylase SLT domain IPN28_05105 PF14718 Soluble lytic murein transglycosylase L domain IPN28_05120 PF00459 Inositol monophosphatase family IPN28_05125 PF01411 tRNA synthetases class II (A) IPN28_05125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IPN28_05125 PF02272 DHHA1 domain IPN28_05130 PF00334 Nucleoside diphosphate kinase IPN28_05155 PF00334 Nucleoside diphosphate kinase IPN28_05160 PF17149 Periplasmic sensor domain found in signal transduction proteins IPN28_05160 PF00072 Response regulator receiver domain IPN28_05160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_05160 PF00512 His Kinase A (phospho-acceptor) domain IPN28_05160 PF00672 HAMP domain IPN28_05160 PF01627 Hpt domain IPN28_05170 PF00551 Formyl transferase IPN28_05175 PF00586 AIR synthase related protein, N-terminal domain IPN28_05175 PF02769 AIR synthase related protein, C-terminal domain IPN28_05185 PF01594 AI-2E family transporter IPN28_05200 PF01612 3'-5' exonuclease IPN28_05200 PF00570 HRDC domain IPN28_05210 PF00152 tRNA synthetases class II (D, K and N) IPN28_05210 PF02938 GAD domain IPN28_05210 PF01336 OB-fold nucleic acid binding domain IPN28_05220 PF00561 alpha/beta hydrolase fold IPN28_05240 PF08448 PAS fold IPN28_05240 PF08447 PAS fold IPN28_05240 PF05231 MASE1 IPN28_05240 PF00563 EAL domain IPN28_05240 PF13426 PAS domain IPN28_05240 PF00990 Diguanylate cyclase, GGDEF domain IPN28_05250 PF00072 Response regulator receiver domain IPN28_05255 PF00990 Diguanylate cyclase, GGDEF domain IPN28_05255 PF00072 Response regulator receiver domain IPN28_05265 PF17876 Cold shock domain IPN28_05265 PF08461 Ribonuclease R winged-helix domain IPN28_05265 PF08206 Ribonuclease B OB domain IPN28_05265 PF00773 RNB domain IPN28_05265 PF00575 S1 RNA binding domain IPN28_05270 PF13368 Topoisomerase C-terminal repeat IPN28_05270 PF01396 Topoisomerase DNA binding C4 zinc finger IPN28_05270 PF01751 Toprim domain IPN28_05270 PF01131 DNA topoisomerase IPN28_05275 PF02481 DNA recombination-mediator protein A IPN28_05275 PF17782 DprA winged helix domain IPN28_05285 PF02660 Glycerol-3-phosphate acyltransferase IPN28_05295 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IPN28_05295 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IPN28_05305 PF13188 PAS domain IPN28_05305 PF00512 His Kinase A (phospho-acceptor) domain IPN28_05305 PF08448 PAS fold IPN28_05305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_05305 PF00072 Response regulator receiver domain IPN28_05310 PF01627 Hpt domain IPN28_05310 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IPN28_05310 PF00512 His Kinase A (phospho-acceptor) domain IPN28_05310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_05310 PF00672 HAMP domain IPN28_05310 PF00072 Response regulator receiver domain IPN28_05315 PF01118 Semialdehyde dehydrogenase, NAD binding domain IPN28_05315 PF02774 Semialdehyde dehydrogenase, dimerisation domain IPN28_05340 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IPN28_05345 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IPN28_05355 PF00890 FAD binding domain IPN28_05355 PF02910 Fumarate reductase flavoprotein C-term IPN28_05360 PF00563 EAL domain IPN28_05360 PF00990 Diguanylate cyclase, GGDEF domain IPN28_05360 PF03707 Bacterial signalling protein N terminal repeat IPN28_05370 PF13085 2Fe-2S iron-sulfur cluster binding domain IPN28_05375 PF02594 Uncharacterised ACR, YggU family COG1872 IPN28_05385 PF13657 HipA N-terminal domain IPN28_05385 PF07804 HipA-like C-terminal domain IPN28_05400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPN28_05400 PF03466 LysR substrate binding domain IPN28_05405 PF02567 Phenazine biosynthesis-like protein IPN28_05410 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IPN28_05410 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IPN28_05415 PF02445 Quinolinate synthetase A protein IPN28_05420 PF12002 MgsA AAA+ ATPase C terminal IPN28_05420 PF16193 AAA C-terminal domain IPN28_05420 PF00004 ATPase family associated with various cellular activities (AAA) IPN28_05435 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IPN28_05440 PF01479 S4 domain IPN28_05440 PF00849 RNA pseudouridylate synthase IPN28_05465 PF01119 DNA mismatch repair protein, C-terminal domain IPN28_05465 PF08676 MutL C terminal dimerisation domain IPN28_05475 PF00342 Phosphoglucose isomerase IPN28_05480 PF05193 Peptidase M16 inactive domain IPN28_05485 PF00675 Insulinase (Peptidase family M16) IPN28_05485 PF05193 Peptidase M16 inactive domain IPN28_05495 PF01252 Signal peptidase (SPase) II IPN28_05510 PF05114 Protein of unknown function (DUF692) IPN28_05520 PF06574 FAD synthetase IPN28_05520 PF01687 Riboflavin kinase IPN28_05535 PF08264 Anticodon-binding domain of tRNA IPN28_05535 PF00133 tRNA synthetases class I (I, L, M and V) IPN28_05545 PF01625 Peptide methionine sulfoxide reductase IPN28_05550 PF01510 N-acetylmuramoyl-L-alanine amidase IPN28_05560 PF02381 MraZ protein, putative antitoxin-like IPN28_05565 PF01795 MraW methylase family IPN28_05575 PF00905 Penicillin binding protein transpeptidase domain IPN28_05575 PF03717 Penicillin-binding Protein dimerisation domain IPN28_05580 PF08245 Mur ligase middle domain IPN28_05580 PF02875 Mur ligase family, glutamate ligase domain IPN28_05580 PF01225 Mur ligase family, catalytic domain IPN28_05590 PF00953 Glycosyl transferase family 4 IPN28_05590 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 IPN28_05595 PF08245 Mur ligase middle domain IPN28_05600 PF01098 Cell cycle protein IPN28_05605 PF04101 Glycosyltransferase family 28 C-terminal domain IPN28_05605 PF03033 Glycosyltransferase family 28 N-terminal domain IPN28_05610 PF01225 Mur ligase family, catalytic domain IPN28_05610 PF08245 Mur ligase middle domain IPN28_05610 PF02875 Mur ligase family, glutamate ligase domain IPN28_05620 PF01565 FAD binding domain IPN28_05620 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IPN28_05635 PF02875 Mur ligase family, glutamate ligase domain IPN28_05635 PF08245 Mur ligase middle domain IPN28_05635 PF01225 Mur ligase family, catalytic domain IPN28_05640 PF00561 alpha/beta hydrolase fold IPN28_05645 PF07478 D-ala D-ala ligase C-terminus IPN28_05645 PF01820 D-ala D-ala ligase N-terminus IPN28_05650 PF08478 POTRA domain, FtsQ-type IPN28_05650 PF03799 Cell division protein FtsQ IPN28_05655 PF02491 SHS2 domain inserted in FTSA IPN28_05665 PF00091 Tubulin/FtsZ family, GTPase domain IPN28_05665 PF12327 FtsZ family, C-terminal domain IPN28_05670 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IPN28_05675 PF13525 Outer membrane lipoprotein IPN28_05680 PF02463 RecF/RecN/SMC N terminal domain IPN28_05695 PF12826 Helix-hairpin-helix motif IPN28_05695 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IPN28_05695 PF00533 BRCA1 C Terminus (BRCT) domain IPN28_05695 PF01653 NAD-dependent DNA ligase adenylation domain IPN28_05695 PF03120 NAD-dependent DNA ligase OB-fold domain IPN28_05715 PF02233 NAD(P) transhydrogenase beta subunit IPN28_05730 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IPN28_05735 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IPN28_05735 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IPN28_05740 PF02321 Outer membrane efflux protein IPN28_05745 PF00664 ABC transporter transmembrane region IPN28_05745 PF00005 ABC transporter IPN28_05745 PF03412 Peptidase C39 family IPN28_05755 PF00211 Adenylate and Guanylate cyclase catalytic domain IPN28_05765 PF00360 Phytochrome region IPN28_05765 PF00990 Diguanylate cyclase, GGDEF domain IPN28_05765 PF00563 EAL domain IPN28_05765 PF01590 GAF domain IPN28_05770 PF00444 Ribosomal protein L36 IPN28_05780 PF04085 rod shape-determining protein MreC IPN28_05790 PF00912 Transglycosylase IPN28_05790 PF17092 Penicillin-binding protein OB-like domain IPN28_05790 PF00905 Penicillin binding protein transpeptidase domain IPN28_05795 PF01098 Cell cycle protein IPN28_05805 PF00462 Glutaredoxin IPN28_05830 PF01259 SAICAR synthetase IPN28_05850 PF01513 ATP-NAD kinase IPN28_05855 PF00156 Phosphoribosyl transferase domain IPN28_05995 PF13229 Right handed beta helix region IPN28_05995 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IPN28_05995 PF12708 Pectate lyase superfamily protein IPN28_06075 PF00180 Isocitrate/isopropylmalate dehydrogenase IPN28_06075 PF18324 Hypothetical protein TT1725 IPN28_06085 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IPN28_06085 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IPN28_06090 PF02325 YGGT family IPN28_06100 PF01053 Cys/Met metabolism PLP-dependent enzyme IPN28_06110 PF00330 Aconitase family (aconitate hydratase) IPN28_06110 PF00694 Aconitase C-terminal domain IPN28_06160 PF01494 FAD binding domain IPN28_06175 PF05175 Methyltransferase small domain IPN28_06190 PF00009 Elongation factor Tu GTP binding domain IPN28_06190 PF00679 Elongation factor G C-terminus IPN28_06190 PF06421 GTP-binding protein LepA C-terminus IPN28_06190 PF03144 Elongation factor Tu domain 2 IPN28_06230 PF02142 MGS-like domain IPN28_06230 PF01808 AICARFT/IMPCHase bienzyme IPN28_06235 PF01739 CheR methyltransferase, SAM binding domain IPN28_06235 PF03705 CheR methyltransferase, all-alpha domain IPN28_06240 PF01339 CheB methylesterase IPN28_06240 PF00072 Response regulator receiver domain IPN28_06245 PF08769 Sporulation initiation factor Spo0A C terminal IPN28_06245 PF00072 Response regulator receiver domain IPN28_06255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_06255 PF00072 Response regulator receiver domain IPN28_06255 PF01584 CheW-like domain IPN28_06255 PF01627 Hpt domain IPN28_06255 PF02895 Signal transducing histidine kinase, homodimeric domain IPN28_06260 PF10090 Histidine phosphotransferase C-terminal domain IPN28_06265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IPN28_06265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IPN28_06265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IPN28_06265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IPN28_06270 PF00483 Nucleotidyl transferase IPN28_06285 PF01321 Creatinase/Prolidase N-terminal domain IPN28_06285 PF00557 Metallopeptidase family M24 IPN28_06295 PF01165 Ribosomal protein S21 IPN28_06305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IPN28_06305 PF00005 ABC transporter IPN28_06325 PF14698 Argininosuccinate lyase C-terminal IPN28_06325 PF00206 Lyase IPN28_06340 PF00550 Phosphopantetheine attachment site IPN28_06345 PF00764 Arginosuccinate synthase IPN28_06355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IPN28_06355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IPN28_06365 PF00202 Aminotransferase class-III IPN28_06380 PF00696 Amino acid kinase family IPN28_06385 PF01139 tRNA-splicing ligase RtcB IPN28_06390 PF02774 Semialdehyde dehydrogenase, dimerisation domain IPN28_06390 PF01118 Semialdehyde dehydrogenase, NAD binding domain IPN28_06400 PF01546 Peptidase family M20/M25/M40 IPN28_06400 PF07687 Peptidase dimerisation domain IPN28_06405 PF00528 Binding-protein-dependent transport system inner membrane component IPN28_06405 PF12911 N-terminal TM domain of oligopeptide transport permease C IPN28_06415 PF00528 Binding-protein-dependent transport system inner membrane component IPN28_06425 PF00300 Histidine phosphatase superfamily (branch 1) IPN28_06430 PF02348 Cytidylyltransferase IPN28_06435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IPN28_06440 PF00563 EAL domain IPN28_06445 PF01180 Dihydroorotate dehydrogenase IPN28_06450 PF01066 CDP-alcohol phosphatidyltransferase IPN28_06475 PF00486 Transcriptional regulatory protein, C terminal IPN28_06475 PF00072 Response regulator receiver domain IPN28_06480 PF18269 T3SS EscN ATPase C-terminal domain IPN28_06480 PF02874 ATP synthase alpha/beta family, beta-barrel domain IPN28_06480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IPN28_06510 PF10609 NUBPL iron-transfer P-loop NTPase IPN28_06515 PF00448 SRP54-type protein, GTPase domain IPN28_06515 PF00448 SRP54-type protein, GTPase domain IPN28_06525 PF00771 FHIPEP family IPN28_06535 PF00158 Sigma-54 interaction domain IPN28_06535 PF02954 Bacterial regulatory protein, Fis family IPN28_06545 PF01618 MotA/TolQ/ExbB proton channel family IPN28_06550 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IPN28_06560 PF14841 FliG middle domain IPN28_06560 PF14842 FliG N-terminal domain IPN28_06560 PF01706 FliG C-terminal domain IPN28_06565 PF01514 Secretory protein of YscJ/FliF family IPN28_06565 PF08345 Flagellar M-ring protein C-terminal IPN28_06585 PF07378 Flagellar protein FlbT IPN28_06595 PF01209 ubiE/COQ5 methyltransferase family IPN28_06610 PF07559 Flagellar basal body protein FlaE IPN28_06610 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IPN28_06610 PF00460 Flagella basal body rod protein IPN28_06615 PF03963 Flagellar hook capping protein - N-terminal region IPN28_06640 PF02119 Flagellar P-ring protein IPN28_06645 PF10768 Class II flagellar assembly regulator IPN28_06650 PF01258 Prokaryotic dksA/traR C4-type zinc finger IPN28_06655 PF02107 Flagellar L-ring protein IPN28_06665 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IPN28_06665 PF00460 Flagella basal body rod protein IPN28_06670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IPN28_06670 PF00460 Flagella basal body rod protein IPN28_06680 PF02154 Flagellar motor switch protein FliM IPN28_06680 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IPN28_06695 PF00072 Response regulator receiver domain IPN28_06710 PF00691 OmpA family IPN28_06710 PF13677 Membrane MotB of proton-channel complex MotA/MotB IPN28_06720 PF00813 FliP family IPN28_06740 PF01312 FlhB HrpN YscU SpaS Family IPN28_06745 PF00460 Flagella basal body rod protein IPN28_06750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IPN28_06755 PF02049 Flagellar hook-basal body complex protein FliE IPN28_06770 PF01313 Bacterial export proteins, family 3 IPN28_06775 PF01311 Bacterial export proteins, family 1 IPN28_06780 PF01312 FlhB HrpN YscU SpaS Family IPN28_06785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_06785 PF00512 His Kinase A (phospho-acceptor) domain IPN28_06785 PF00072 Response regulator receiver domain IPN28_06785 PF13188 PAS domain IPN28_06785 PF08448 PAS fold IPN28_06790 PF00154 recA bacterial DNA recombination protein IPN28_06800 PF01668 SmpB protein IPN28_06805 PF00701 Dihydrodipicolinate synthetase family IPN28_06810 PF01464 Transglycosylase SLT domain IPN28_06810 PF14718 Soluble lytic murein transglycosylase L domain IPN28_06815 PF00196 Bacterial regulatory proteins, luxR family IPN28_06815 PF00072 Response regulator receiver domain IPN28_06820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_06820 PF00512 His Kinase A (phospho-acceptor) domain IPN28_06820 PF08448 PAS fold IPN28_06820 PF13188 PAS domain IPN28_06820 PF00072 Response regulator receiver domain IPN28_06850 PF17863 AAA lid domain IPN28_06850 PF07726 ATPase family associated with various cellular activities (AAA) IPN28_06860 PF01743 Poly A polymerase head domain IPN28_06860 PF13735 tRNA nucleotidyltransferase domain 2 putative IPN28_06860 PF12627 Probable RNA and SrmB- binding site of polymerase A IPN28_06870 PF01218 Coproporphyrinogen III oxidase IPN28_06875 PF00588 SpoU rRNA Methylase family IPN28_06880 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IPN28_06880 PF00355 Rieske [2Fe-2S] domain IPN28_06885 PF00032 Cytochrome b(C-terminal)/b6/petD IPN28_06885 PF00033 Cytochrome b/b6/petB IPN28_06890 PF00033 Cytochrome b/b6/petB IPN28_06890 PF02167 Cytochrome C1 family IPN28_06890 PF00032 Cytochrome b(C-terminal)/b6/petD IPN28_06915 PF00478 IMP dehydrogenase / GMP reductase domain IPN28_06925 PF16123 Hydroxyacylglutathione hydrolase C-terminus IPN28_06925 PF00753 Metallo-beta-lactamase superfamily IPN28_06930 PF08241 Methyltransferase domain IPN28_06940 PF00156 Phosphoribosyl transferase domain IPN28_06945 PF01494 FAD binding domain IPN28_06950 PF00462 Glutaredoxin IPN28_06955 PF00795 Carbon-nitrogen hydrolase IPN28_06960 PF01053 Cys/Met metabolism PLP-dependent enzyme IPN28_06965 PF05872 Bacterial protein of unknown function (DUF853) IPN28_06970 PF01381 Helix-turn-helix IPN28_06980 PF02230 Phospholipase/Carboxylesterase IPN28_06995 PF02600 Disulfide bond formation protein DsbB IPN28_07010 PF07992 Pyridine nucleotide-disulphide oxidoreductase IPN28_07010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IPN28_07025 PF03600 Citrate transporter IPN28_07025 PF02080 TrkA-C domain IPN28_07030 PF02082 Transcriptional regulator IPN28_07055 PF01757 Acyltransferase family IPN28_07060 PF01479 S4 domain IPN28_07060 PF00163 Ribosomal protein S4/S9 N-terminal domain IPN28_07065 PF00588 SpoU rRNA Methylase family IPN28_07085 PF00749 tRNA synthetases class I (E and Q), catalytic domain IPN28_07090 PF02540 NAD synthase IPN28_07090 PF00795 Carbon-nitrogen hydrolase IPN28_07095 PF01474 Class-II DAHP synthetase family IPN28_07110 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IPN28_07115 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IPN28_07150 PF01451 Low molecular weight phosphotyrosine protein phosphatase IPN28_07165 PF00581 Rhodanese-like domain IPN28_07165 PF00899 ThiF family IPN28_07185 PF17760 UvrA interaction domain IPN28_07185 PF17755 UvrA DNA-binding domain IPN28_07200 PF00436 Single-strand binding protein family IPN28_07210 PF03989 DNA gyrase C-terminal domain, beta-propeller IPN28_07210 PF00521 DNA gyrase/topoisomerase IV, subunit A IPN28_07220 PF01467 Cytidylyltransferase-like IPN28_07240 PF00512 His Kinase A (phospho-acceptor) domain IPN28_07240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_07245 PF00072 Response regulator receiver domain IPN28_07245 PF00486 Transcriptional regulatory protein, C terminal IPN28_07265 PF00211 Adenylate and Guanylate cyclase catalytic domain IPN28_07270 PF01527 Transposase IPN28_07280 PF00132 Bacterial transferase hexapeptide (six repeats) IPN28_07290 PF00271 Helicase conserved C-terminal domain IPN28_07290 PF00270 DEAD/DEAH box helicase IPN28_07290 PF17191 RecG wedge domain IPN28_07305 PF03937 Flavinator of succinate dehydrogenase IPN28_07310 PF00271 Helicase conserved C-terminal domain IPN28_07310 PF00270 DEAD/DEAH box helicase IPN28_07315 PF00313 'Cold-shock' DNA-binding domain IPN28_07335 PF00270 DEAD/DEAH box helicase IPN28_07335 PF02559 CarD-like/TRCF domain IPN28_07335 PF00271 Helicase conserved C-terminal domain IPN28_07335 PF17757 UvrB interaction domain IPN28_07335 PF03461 TRCF domain IPN28_07345 PF01636 Phosphotransferase enzyme family IPN28_07350 PF00155 Aminotransferase class I and II IPN28_07360 PF03466 LysR substrate binding domain IPN28_07360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPN28_07365 PF07992 Pyridine nucleotide-disulphide oxidoreductase IPN28_07370 PF01037 Lrp/AsnC ligand binding domain IPN28_07380 PF01134 Glucose inhibited division protein A IPN28_07390 PF11799 impB/mucB/samB family C-terminal domain IPN28_07390 PF11798 IMS family HHH motif IPN28_07390 PF00817 impB/mucB/samB family IPN28_07405 PF11953 Domain of unknown function (DUF3470) IPN28_07405 PF00037 4Fe-4S binding domain IPN28_07410 PF00291 Pyridoxal-phosphate dependent enzyme IPN28_07420 PF07992 Pyridine nucleotide-disulphide oxidoreductase IPN28_07425 PF05192 MutS domain III IPN28_07425 PF05188 MutS domain II IPN28_07425 PF00488 MutS domain V IPN28_07425 PF05190 MutS family domain IV IPN28_07425 PF01624 MutS domain I IPN28_07435 PF04127 DNA / pantothenate metabolism flavoprotein IPN28_07435 PF02441 Flavoprotein IPN28_07445 PF01209 ubiE/COQ5 methyltransferase family IPN28_07450 PF03023 Lipid II flippase MurJ IPN28_07455 PF00579 tRNA synthetases class I (W and Y) IPN28_07465 PF01925 Sulfite exporter TauE/SafE IPN28_07480 PF01106 NifU-like domain IPN28_07485 PF00814 Glycoprotease family IPN28_07490 PF05443 ROS/MUCR transcriptional regulator protein IPN28_07495 PF14748 Pyrroline-5-carboxylate reductase dimerisation IPN28_07495 PF03807 NADP oxidoreductase coenzyme F420-dependent IPN28_07510 PF01790 Prolipoprotein diacylglyceryl transferase IPN28_07525 PF14572 Phosphoribosyl synthetase-associated domain IPN28_07525 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IPN28_07530 PF01386 Ribosomal L25p family IPN28_07530 PF14693 Ribosomal protein TL5, C-terminal domain IPN28_07535 PF01195 Peptidyl-tRNA hydrolase IPN28_07540 PF01926 50S ribosome-binding GTPase IPN28_07540 PF06071 Protein of unknown function (DUF933) IPN28_07555 PF01063 Amino-transferase class IV IPN28_07560 PF00072 Response regulator receiver domain IPN28_07560 PF00486 Transcriptional regulatory protein, C terminal IPN28_07565 PF00672 HAMP domain IPN28_07565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_07565 PF00512 His Kinase A (phospho-acceptor) domain IPN28_07570 PF01588 Putative tRNA binding domain IPN28_07580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_07580 PF00512 His Kinase A (phospho-acceptor) domain IPN28_07580 PF00989 PAS fold IPN28_07580 PF13188 PAS domain IPN28_07585 PF02631 RecX family IPN28_07620 PF05233 PHB accumulation regulatory domain IPN28_07620 PF07879 PHB/PHA accumulation regulator DNA-binding domain IPN28_07630 PF02803 Thiolase, C-terminal domain IPN28_07630 PF00108 Thiolase, N-terminal domain IPN28_07665 PF10415 Fumarase C C-terminus IPN28_07665 PF00206 Lyase IPN28_07670 PF02222 ATP-grasp domain IPN28_07670 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IPN28_07675 PF00731 AIR carboxylase IPN28_07685 PF00365 Phosphofructokinase IPN28_07700 PF00920 Dehydratase family IPN28_07705 PF03734 L,D-transpeptidase catalytic domain IPN28_07710 PF05951 Bacterial protein of unknown function (DUF882) IPN28_07715 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IPN28_07720 PF00809 Pterin binding enzyme IPN28_07725 PF00300 Histidine phosphatase superfamily (branch 1) IPN28_07730 PF01958 Domain of unknown function DUF108 IPN28_07730 PF03447 Homoserine dehydrogenase, NAD binding domain IPN28_07735 PF11967 Recombination protein O N terminal IPN28_07735 PF02565 Recombination protein O C terminal IPN28_07740 PF00521 DNA gyrase/topoisomerase IV, subunit A IPN28_07740 PF03989 DNA gyrase C-terminal domain, beta-propeller IPN28_07750 PF13677 Membrane MotB of proton-channel complex MotA/MotB IPN28_07750 PF00691 OmpA family IPN28_07755 PF01618 MotA/TolQ/ExbB proton channel family IPN28_07760 PF00490 Delta-aminolevulinic acid dehydratase IPN28_07775 PF02502 Ribose/Galactose Isomerase IPN28_07780 PF00464 Serine hydroxymethyltransferase IPN28_07790 PF03477 ATP cone domain IPN28_07795 PF01872 RibD C-terminal domain IPN28_07795 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IPN28_07800 PF00677 Lumazine binding domain IPN28_07805 PF00925 GTP cyclohydrolase II IPN28_07805 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IPN28_07810 PF00885 6,7-dimethyl-8-ribityllumazine synthase IPN28_07815 PF01029 NusB family IPN28_07840 PF03601 Conserved hypothetical protein 698 IPN28_07845 PF01783 Ribosomal L32p protein family IPN28_07850 PF02504 Fatty acid synthesis protein IPN28_07855 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IPN28_07855 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IPN28_07860 PF00216 Bacterial DNA-binding protein IPN28_07865 PF13411 MerR HTH family regulatory protein IPN28_07875 PF05675 Protein of unknown function (DUF817) IPN28_07895 PF00572 Ribosomal protein L13 IPN28_07900 PF00380 Ribosomal protein S9/S16 IPN28_07905 PF00132 Bacterial transferase hexapeptide (six repeats) IPN28_07915 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus IPN28_07915 PF00561 alpha/beta hydrolase fold IPN28_07925 PF01842 ACT domain IPN28_07925 PF00742 Homoserine dehydrogenase IPN28_07925 PF03447 Homoserine dehydrogenase, NAD binding domain IPN28_07930 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded IPN28_07935 PF17768 RecJ OB domain IPN28_07935 PF02272 DHHA1 domain IPN28_07935 PF01368 DHH family IPN28_07950 PF01502 Phosphoribosyl-AMP cyclohydrolase IPN28_07960 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IPN28_07960 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IPN28_07965 PF00271 Helicase conserved C-terminal domain IPN28_07965 PF00270 DEAD/DEAH box helicase IPN28_07970 PF03968 OstA-like protein IPN28_07970 PF04453 LPS transport system D IPN28_07985 PF00204 DNA gyrase B IPN28_07985 PF01751 Toprim domain IPN28_07985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_07985 PF00986 DNA gyrase B subunit, carboxyl terminus IPN28_07995 PF00120 Glutamine synthetase, catalytic domain IPN28_07995 PF03951 Glutamine synthetase, beta-Grasp domain IPN28_08005 PF03853 YjeF-related protein N-terminus IPN28_08005 PF01256 Carbohydrate kinase IPN28_08015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IPN28_08015 PF05698 Bacterial trigger factor protein (TF) C-terminus IPN28_08015 PF05697 Bacterial trigger factor protein (TF) IPN28_08020 PF00574 Clp protease IPN28_08025 PF02190 ATP-dependent protease La (LON) substrate-binding domain IPN28_08025 PF05362 Lon protease (S16) C-terminal proteolytic domain IPN28_08025 PF00004 ATPase family associated with various cellular activities (AAA) IPN28_08030 PF00216 Bacterial DNA-binding protein IPN28_08065 PF04551 GcpE protein IPN28_08070 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IPN28_08070 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IPN28_08090 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IPN28_08095 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IPN28_08100 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IPN28_08105 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IPN28_08125 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IPN28_08125 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IPN28_08125 PF10531 SLBB domain IPN28_08150 PF00586 AIR synthase related protein, N-terminal domain IPN28_08150 PF02769 AIR synthase related protein, C-terminal domain IPN28_08150 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IPN28_08160 PF00384 Molybdopterin oxidoreductase IPN28_08160 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal IPN28_08160 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IPN28_08180 PF00146 NADH dehydrogenase IPN28_08185 PF12838 4Fe-4S dicluster domain IPN28_08195 PF09411 Lipid A 3-O-deacylase (PagL) IPN28_08200 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IPN28_08205 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IPN28_08210 PF00361 Proton-conducting membrane transporter IPN28_08210 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IPN28_08215 PF00361 Proton-conducting membrane transporter IPN28_08215 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus IPN28_08220 PF00361 Proton-conducting membrane transporter IPN28_08225 PF08279 HTH domain IPN28_08225 PF03099 Biotin/lipoate A/B protein ligase family IPN28_08225 PF02237 Biotin protein ligase C terminal domain IPN28_08230 PF03309 Type III pantothenate kinase IPN28_08235 PF17770 Ribonuclease J C-terminal domain IPN28_08235 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain IPN28_08235 PF12706 Beta-lactamase superfamily domain IPN28_08250 PF03129 Anticodon binding domain IPN28_08250 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IPN28_08250 PF09180 Prolyl-tRNA synthetase, C-terminal IPN28_08255 PF12704 MacB-like periplasmic core domain IPN28_08255 PF02687 FtsX-like permease family IPN28_08260 PF00005 ABC transporter IPN28_08265 PF00561 alpha/beta hydrolase fold IPN28_08270 PF02811 PHP domain IPN28_08270 PF07733 Bacterial DNA polymerase III alpha NTPase domain IPN28_08270 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IPN28_08270 PF14579 Helix-hairpin-helix motif IPN28_08275 PF00318 Ribosomal protein S2 IPN28_08280 PF00889 Elongation factor TS IPN28_08285 PF00696 Amino acid kinase family IPN28_08290 PF01765 Ribosome recycling factor IPN28_08295 PF01255 Putative undecaprenyl diphosphate synthase IPN28_08305 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IPN28_08305 PF13288 DXP reductoisomerase C-terminal domain IPN28_08305 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IPN28_08310 PF17820 PDZ domain IPN28_08310 PF02163 Peptidase family M50 IPN28_08315 PF17820 PDZ domain IPN28_08315 PF02163 Peptidase family M50 IPN28_08320 PF07244 Surface antigen variable number repeat IPN28_08320 PF01103 Surface antigen IPN28_08330 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IPN28_08330 PF00132 Bacterial transferase hexapeptide (six repeats) IPN28_08335 PF07977 FabA-like domain IPN28_08340 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IPN28_08340 PF00132 Bacterial transferase hexapeptide (six repeats) IPN28_08345 PF17930 LpxI N-terminal domain IPN28_08345 PF06230 LpxI C-terminal domain IPN28_08350 PF02684 Lipid-A-disaccharide synthetase IPN28_08355 PF00285 Citrate synthase, C-terminal domain IPN28_08360 PF00749 tRNA synthetases class I (E and Q), catalytic domain IPN28_08370 PF01726 LexA DNA binding domain IPN28_08370 PF00717 Peptidase S24-like IPN28_08375 PF00218 Indole-3-glycerol phosphate synthase IPN28_08380 PF00591 Glycosyl transferase family, a/b domain IPN28_08380 PF02885 Glycosyl transferase family, helical bundle domain IPN28_08385 PF00117 Glutamine amidotransferase class-I IPN28_08390 PF04748 Divergent polysaccharide deacetylase IPN28_08395 PF00425 chorismate binding enzyme IPN28_08395 PF04715 Anthranilate synthase component I, N terminal region IPN28_08405 PF00121 Triosephosphate isomerase IPN28_08410 PF03840 Preprotein translocase SecG subunit IPN28_08415 PF00117 Glutamine amidotransferase class-I IPN28_08415 PF06418 CTP synthase N-terminus IPN28_08420 PF01209 ubiE/COQ5 methyltransferase family IPN28_08425 PF00793 DAHP synthetase I family IPN28_08435 PF03952 Enolase, N-terminal domain IPN28_08435 PF00113 Enolase, C-terminal TIM barrel domain IPN28_08440 PF02622 Uncharacterized ACR, COG1678 IPN28_08450 PF00676 Dehydrogenase E1 component IPN28_08465 PF00364 Biotin-requiring enzyme IPN28_08465 PF02779 Transketolase, pyrimidine binding domain IPN28_08465 PF02780 Transketolase, C-terminal domain IPN28_08475 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IPN28_08475 PF00364 Biotin-requiring enzyme IPN28_08475 PF02817 e3 binding domain IPN28_08490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IPN28_08490 PF07992 Pyridine nucleotide-disulphide oxidoreductase IPN28_08500 PF04055 Radical SAM superfamily IPN28_08505 PF03364 Polyketide cyclase / dehydrase and lipid transport IPN28_08510 PF18146 Damage-inducible protein CinA KH domain IPN28_08510 PF00994 Probable molybdopterin binding domain IPN28_08510 PF02464 Competence-damaged protein IPN28_08515 PF04608 Phosphatidylglycerophosphatase A IPN28_08520 PF02542 YgbB family IPN28_08520 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IPN28_08525 PF00672 HAMP domain IPN28_08525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_08530 PF00158 Sigma-54 interaction domain IPN28_08530 PF00072 Response regulator receiver domain IPN28_08530 PF02954 Bacterial regulatory protein, Fis family IPN28_08535 PF01177 Asp/Glu/Hydantoin racemase IPN28_08545 PF17209 Hfq protein IPN28_08550 PF16360 GTP-binding GTPase Middle Region IPN28_08550 PF01926 50S ribosome-binding GTPase IPN28_08550 PF13167 GTP-binding GTPase N-terminal IPN28_08555 PF07992 Pyridine nucleotide-disulphide oxidoreductase IPN28_08555 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IPN28_08560 PF01493 GXGXG motif IPN28_08560 PF01645 Conserved region in glutamate synthase IPN28_08560 PF00310 Glutamine amidotransferases class-II IPN28_08560 PF04898 Glutamate synthase central domain IPN28_08565 PF03819 MazG nucleotide pyrophosphohydrolase domain IPN28_08575 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IPN28_08575 PF00072 Response regulator receiver domain IPN28_08575 PF01627 Hpt domain IPN28_08575 PF00672 HAMP domain IPN28_08575 PF00512 His Kinase A (phospho-acceptor) domain IPN28_08575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_08580 PF00072 Response regulator receiver domain IPN28_08585 PF00072 Response regulator receiver domain IPN28_08590 PF02954 Bacterial regulatory protein, Fis family IPN28_08590 PF00072 Response regulator receiver domain IPN28_08590 PF00158 Sigma-54 interaction domain IPN28_08600 PF01475 Ferric uptake regulator family IPN28_08615 PF00005 ABC transporter IPN28_08635 PF01026 TatD related DNase IPN28_08640 PF09334 tRNA synthetases class I (M) IPN28_08650 PF02223 Thymidylate kinase IPN28_08655 PF07943 Penicillin-binding protein 5, C-terminal domain IPN28_08655 PF00768 D-alanyl-D-alanine carboxypeptidase IPN28_08660 PF03330 Lytic transglycolase IPN28_08665 PF13406 Transglycosylase SLT domain IPN28_08675 PF09335 SNARE associated Golgi protein IPN28_08745 PF01638 HxlR-like helix-turn-helix IPN28_08815 PF08787 Alginate lyase IPN28_08855 PF00155 Aminotransferase class I and II IPN28_08875 PF01325 Iron dependent repressor, N-terminal DNA binding domain IPN28_08875 PF02742 Iron dependent repressor, metal binding and dimerisation domain IPN28_08880 PF01566 Natural resistance-associated macrophage protein IPN28_08885 PF00829 Ribosomal prokaryotic L21 protein IPN28_08890 PF01016 Ribosomal L27 protein IPN28_08895 PF01926 50S ribosome-binding GTPase IPN28_08895 PF01018 GTP1/OBG IPN28_08900 PF00696 Amino acid kinase family IPN28_08900 PF01472 PUA domain IPN28_08905 PF17432 Domain of unknown function (DUF3458_C) ARM repeats IPN28_08905 PF01433 Peptidase family M1 domain IPN28_08905 PF11940 Domain of unknown function (DUF3458) Ig-like fold IPN28_08910 PF01351 Ribonuclease HII IPN28_08915 PF01555 DNA methylase IPN28_08915 PF18755 Restriction Enzyme Adenine Methylase Associated IPN28_08930 PF00730 HhH-GPD superfamily base excision DNA repair protein IPN28_08930 PF14815 NUDIX domain IPN28_08940 PF09285 Elongation factor P, C-terminal IPN28_08940 PF08207 Elongation factor P (EF-P) KOW-like domain IPN28_08940 PF01132 Elongation factor P (EF-P) OB domain IPN28_08945 PF00459 Inositol monophosphatase family IPN28_08960 PF02463 RecF/RecN/SMC N terminal domain IPN28_08970 PF00119 ATP synthase A chain IPN28_08980 PF00430 ATP synthase B/B' CF(0) IPN28_08985 PF00430 ATP synthase B/B' CF(0) IPN28_08990 PF00171 Aldehyde dehydrogenase family IPN28_08995 PF01467 Cytidylyltransferase-like IPN28_09005 PF02590 Predicted SPOUT methyltransferase IPN28_09015 PF03572 Peptidase family S41 IPN28_09015 PF13180 PDZ domain IPN28_09025 PF00293 NUDIX domain IPN28_09030 PF07676 WD40-like Beta Propeller Repeat IPN28_09030 PF04052 TolB amino-terminal domain IPN28_09040 PF02472 Biopolymer transport protein ExbD/TolR IPN28_09045 PF01618 MotA/TolQ/ExbB proton channel family IPN28_09050 PF03061 Thioesterase superfamily IPN28_09055 PF17864 RuvB AAA lid domain IPN28_09055 PF05491 RuvB C-terminal winged helix domain IPN28_09055 PF05496 Holliday junction DNA helicase RuvB P-loop domain IPN28_09060 PF01330 RuvA N terminal domain IPN28_09060 PF07499 RuvA, C-terminal domain IPN28_09065 PF02075 Crossover junction endodeoxyribonuclease RuvC IPN28_09070 PF01709 Transcriptional regulator IPN28_09085 PF13277 YmdB-like protein IPN28_09090 PF01812 5-formyltetrahydrofolate cyclo-ligase family IPN28_09110 PF00456 Transketolase, thiamine diphosphate binding domain IPN28_09110 PF02780 Transketolase, C-terminal domain IPN28_09110 PF02779 Transketolase, pyrimidine binding domain IPN28_09115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IPN28_09115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IPN28_09125 PF01791 DeoC/LacD family aldolase IPN28_09135 PF00152 tRNA synthetases class II (D, K and N) IPN28_09140 PF01197 Ribosomal protein L31 IPN28_09150 PF10458 Valyl tRNA synthetase tRNA binding arm IPN28_09150 PF00133 tRNA synthetases class I (I, L, M and V) IPN28_09150 PF08264 Anticodon-binding domain of tRNA IPN28_09185 PF00141 Peroxidase IPN28_09190 PF01475 Ferric uptake regulator family IPN28_09195 PF00719 Inorganic pyrophosphatase IPN28_09200 PF08534 Redoxin IPN28_09205 PF00672 HAMP domain IPN28_09205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_09205 PF00512 His Kinase A (phospho-acceptor) domain IPN28_09210 PF00072 Response regulator receiver domain IPN28_09210 PF00486 Transcriptional regulatory protein, C terminal IPN28_09230 PF00581 Rhodanese-like domain IPN28_09245 PF05958 tRNA (Uracil-5-)-methyltransferase IPN28_09280 PF02534 Type IV secretory system Conjugative DNA transfer IPN28_09315 PF14220 Domain of unknown function (DUF4329) IPN28_09315 PF05593 RHS Repeat IPN28_09315 PF03527 RHS protein IPN28_09330 PF08401 Domain of unknown function (DUF1738) IPN28_09330 PF13362 Toprim domain IPN28_09330 PF18818 Metallopeptidase superfamily domain IPN28_09345 PF17762 HTH domain found in ParB protein IPN28_09345 PF02195 ParB-like nuclease domain IPN28_09370 PF02086 D12 class N6 adenine-specific DNA methyltransferase IPN28_09385 PF01381 Helix-turn-helix IPN28_09435 PF01743 Poly A polymerase head domain IPN28_09435 PF02272 DHHA1 domain IPN28_09435 PF01368 DHH family IPN28_09435 PF00571 CBS domain IPN28_09440 PF12146 Serine aminopeptidase, S33 IPN28_09445 PF12146 Serine aminopeptidase, S33 IPN28_09450 PF00005 ABC transporter IPN28_09450 PF00664 ABC transporter transmembrane region IPN28_09455 PF01734 Patatin-like phospholipase IPN28_09470 PF01235 Sodium:alanine symporter family IPN28_09480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IPN28_09480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IPN28_09485 PF00919 Uncharacterized protein family UPF0004 IPN28_09485 PF01938 TRAM domain IPN28_09485 PF04055 Radical SAM superfamily IPN28_09495 PF02562 PhoH-like protein IPN28_09500 PF02130 Uncharacterized protein family UPF0054 IPN28_09505 PF00571 CBS domain IPN28_09505 PF03471 Transporter associated domain IPN28_09510 PF00795 Carbon-nitrogen hydrolase IPN28_09515 PF01381 Helix-turn-helix IPN28_09520 PF02773 S-adenosylmethionine synthetase, C-terminal domain IPN28_09520 PF00438 S-adenosylmethionine synthetase, N-terminal domain IPN28_09520 PF02772 S-adenosylmethionine synthetase, central domain IPN28_09525 PF02390 Putative methyltransferase IPN28_09530 PF02576 RimP N-terminal domain IPN28_09530 PF17384 RimP C-terminal SH3 domain IPN28_09535 PF08529 NusA N-terminal domain IPN28_09535 PF13184 NusA-like KH domain IPN28_09535 PF00575 S1 RNA binding domain IPN28_09540 PF00009 Elongation factor Tu GTP binding domain IPN28_09540 PF04760 Translation initiation factor IF-2, N-terminal region IPN28_09540 PF08364 Bacterial translation initiation factor IF-2 associated region IPN28_09540 PF11987 Translation-initiation factor 2 IPN28_09540 PF03144 Elongation factor Tu domain 2 IPN28_09545 PF02033 Ribosome-binding factor A IPN28_09550 PF01509 TruB family pseudouridylate synthase (N terminal domain) IPN28_09550 PF16198 tRNA pseudouridylate synthase B C-terminal domain IPN28_09555 PF00312 Ribosomal protein S15 IPN28_09570 PF00300 Histidine phosphatase superfamily (branch 1) IPN28_09575 PF00013 KH domain IPN28_09575 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IPN28_09575 PF01138 3' exoribonuclease family, domain 1 IPN28_09575 PF03725 3' exoribonuclease family, domain 2 IPN28_09575 PF00575 S1 RNA binding domain IPN28_09605 PF01757 Acyltransferase family IPN28_09625 PF00109 Beta-ketoacyl synthase, N-terminal domain IPN28_09625 PF02801 Beta-ketoacyl synthase, C-terminal domain IPN28_09630 PF07977 FabA-like domain IPN28_09645 PF01207 Dihydrouridine synthase (Dus) IPN28_09655 PF01521 Iron-sulphur cluster biosynthesis IPN28_09660 PF01883 Iron-sulfur cluster assembly protein IPN28_09670 PF00266 Aminotransferase class-V IPN28_09675 PF04480 Protein of unknown function (DUF559) IPN28_09690 PF01458 Uncharacterized protein family (UPF0051) IPN28_09700 PF00005 ABC transporter IPN28_09715 PF01329 Pterin 4 alpha carbinolamine dehydratase IPN28_09730 PF01458 Uncharacterized protein family (UPF0051) IPN28_09735 PF02082 Transcriptional regulator IPN28_09745 PF16658 Class II release factor RF3, C-terminal domain IPN28_09745 PF00009 Elongation factor Tu GTP binding domain IPN28_09745 PF03144 Elongation factor Tu domain 2 IPN28_09765 PF01475 Ferric uptake regulator family IPN28_09770 PF13426 PAS domain IPN28_09770 PF00989 PAS fold IPN28_09770 PF13188 PAS domain IPN28_09770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_09770 PF00512 His Kinase A (phospho-acceptor) domain IPN28_09780 PF01702 Queuine tRNA-ribosyltransferase IPN28_09785 PF00830 Ribosomal L28 family IPN28_09790 PF03186 CobD/Cbib protein IPN28_09805 PF03652 Holliday junction resolvase IPN28_09810 PF02686 Glu-tRNAGln amidotransferase C subunit IPN28_09820 PF01425 Amidase IPN28_09830 PF02934 GatB/GatE catalytic domain IPN28_09830 PF02637 GatB domain IPN28_09835 PF02342 TerD domain IPN28_09870 PF01370 NAD dependent epimerase/dehydratase family IPN28_09870 PF02222 ATP-grasp domain IPN28_09880 PF00313 'Cold-shock' DNA-binding domain IPN28_09895 PF06736 Protein of unknown function (DUF1211) IPN28_09905 PF01578 Cytochrome C assembly protein IPN28_09905 PF05140 ResB-like family IPN28_09910 PF08534 Redoxin IPN28_09915 PF00883 Cytosol aminopeptidase family, catalytic domain IPN28_09915 PF02789 Cytosol aminopeptidase family, N-terminal domain IPN28_09920 PF01225 Mur ligase family, catalytic domain IPN28_09920 PF08245 Mur ligase middle domain IPN28_09920 PF02875 Mur ligase family, glutamate ligase domain IPN28_09930 PF10431 C-terminal, D2-small domain, of ClpB protein IPN28_09930 PF02861 Clp amino terminal domain, pathogenicity island component IPN28_09930 PF17871 AAA lid domain IPN28_09930 PF07724 AAA domain (Cdc48 subfamily) IPN28_09930 PF00004 ATPase family associated with various cellular activities (AAA) IPN28_09940 PF05175 Methyltransferase small domain IPN28_09940 PF17827 PrmC N-terminal domain IPN28_09945 PF00472 RF-1 domain IPN28_09945 PF03462 PCRF domain IPN28_09955 PF13840 ACT domain IPN28_09955 PF01842 ACT domain IPN28_09955 PF00696 Amino acid kinase family IPN28_09975 PF01012 Electron transfer flavoprotein domain IPN28_09980 PF01012 Electron transfer flavoprotein domain IPN28_09980 PF00766 Electron transfer flavoprotein FAD-binding domain IPN28_09990 PF08534 Redoxin IPN28_10000 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IPN28_10000 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IPN28_10020 PF00005 ABC transporter IPN28_10040 PF02153 Prephenate dehydrogenase IPN28_10045 PF01842 ACT domain IPN28_10045 PF00800 Prephenate dehydratase IPN28_10045 PF01817 Chorismate mutase type II IPN28_10050 PF04204 Homoserine O-succinyltransferase IPN28_10055 PF01209 ubiE/COQ5 methyltransferase family IPN28_10060 PF00293 NUDIX domain IPN28_10070 PF02810 SEC-C motif IPN28_10070 PF07517 SecA DEAD-like domain IPN28_10070 PF07516 SecA Wing and Scaffold domain IPN28_10070 PF01043 SecA preprotein cross-linking domain IPN28_10075 PF01266 FAD dependent oxidoreductase IPN28_10080 PF00248 Aldo/keto reductase family IPN28_10085 PF01761 3-dehydroquinate synthase IPN28_10090 PF01202 Shikimate kinase IPN28_10105 PF00589 Phage integrase family IPN28_10105 PF02899 Phage integrase, N-terminal SAM-like domain IPN28_10110 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IPN28_10125 PF00226 DnaJ domain IPN28_10130 PF07728 AAA domain (dynein-related subfamily) IPN28_10130 PF12556 Cobaltochelatase CobS subunit N terminal IPN28_10130 PF08406 CbbQ/NirQ/NorQ C-terminal IPN28_10140 PF11775 Cobalamin biosynthesis protein CobT VWA domain IPN28_10140 PF06213 Cobalamin biosynthesis protein CobT IPN28_10145 PF01625 Peptide methionine sulfoxide reductase IPN28_10160 PF03129 Anticodon binding domain IPN28_10160 PF13393 Histidyl-tRNA synthetase IPN28_10175 PF02657 Fe-S metabolism associated domain IPN28_10180 PF06689 ClpX C4-type zinc finger IPN28_10180 PF10431 C-terminal, D2-small domain, of ClpB protein IPN28_10180 PF07724 AAA domain (Cdc48 subfamily) IPN28_10205 PF00535 Glycosyl transferase family 2 IPN28_10220 PF03441 FAD binding domain of DNA photolyase IPN28_10220 PF00875 DNA photolyase IPN28_10225 PF17676 LD-carboxypeptidase C-terminal domain IPN28_10225 PF02016 LD-carboxypeptidase N-terminal domain IPN28_10240 PF01435 Peptidase family M48 IPN28_10240 PF07720 Tetratricopeptide repeat IPN28_10250 PF00561 alpha/beta hydrolase fold IPN28_10255 PF00162 Phosphoglycerate kinase IPN28_10270 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus IPN28_10270 PF01048 Phosphorylase superfamily IPN28_10275 PF02881 SRP54-type protein, helical bundle domain IPN28_10275 PF00448 SRP54-type protein, GTPase domain IPN28_10280 PF00919 Uncharacterized protein family UPF0004 IPN28_10280 PF04055 Radical SAM superfamily IPN28_10290 PF01678 Diaminopimelate epimerase IPN28_10295 PF00448 SRP54-type protein, GTPase domain IPN28_10295 PF02881 SRP54-type protein, helical bundle domain IPN28_10295 PF02978 Signal peptide binding domain IPN28_10300 PF00886 Ribosomal protein S16 IPN28_10305 PF01782 RimM N-terminal domain IPN28_10305 PF05239 PRC-barrel domain IPN28_10310 PF01746 tRNA (Guanine-1)-methyltransferase IPN28_10315 PF01245 Ribosomal protein L19 IPN28_10330 PF00330 Aconitase family (aconitate hydratase) IPN28_10345 PF00694 Aconitase C-terminal domain IPN28_10350 PF00180 Isocitrate/isopropylmalate dehydrogenase IPN28_10360 PF16200 C-terminal region of band_7 IPN28_10360 PF01145 SPFH domain / Band 7 family IPN28_10370 PF12833 Helix-turn-helix domain IPN28_10370 PF07883 Cupin domain IPN28_10385 PF03958 Bacterial type II/III secretion system short domain IPN28_10385 PF00263 Bacterial type II and III secretion system protein IPN28_10390 PF00437 Type II/IV secretion system protein IPN28_10395 PF00437 Type II/IV secretion system protein IPN28_10400 PF01478 Type IV leader peptidase family IPN28_10400 PF06750 Bacterial Peptidase A24 N-terminal domain IPN28_10410 PF00005 ABC transporter IPN28_10430 PF00482 Type II secretion system (T2SS), protein F IPN28_10435 PF00437 Type II/IV secretion system protein IPN28_10435 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IPN28_10440 PF03951 Glutamine synthetase, beta-Grasp domain IPN28_10440 PF00120 Glutamine synthetase, catalytic domain IPN28_10480 PF08241 Methyltransferase domain IPN28_10490 PF06470 SMC proteins Flexible Hinge Domain IPN28_10490 PF02463 RecF/RecN/SMC N terminal domain IPN28_10495 PF04542 Sigma-70 region 2 IPN28_10495 PF04546 Sigma-70, non-essential region IPN28_10495 PF00140 Sigma-70 factor, region 1.2 IPN28_10495 PF04539 Sigma-70 region 3 IPN28_10495 PF04545 Sigma-70, region 4 IPN28_10495 PF03979 Sigma-70 factor, region 1.1 IPN28_10500 PF01807 CHC2 zinc finger IPN28_10500 PF08275 DNA primase catalytic core, N-terminal domain IPN28_10500 PF10410 DnaB-helicase binding domain of primase IPN28_10500 PF08278 DNA primase DnaG DnaB-binding IPN28_10500 PF13662 Toprim domain IPN28_10505 PF09424 Yqey-like protein IPN28_10510 PF00117 Glutamine amidotransferase class-I IPN28_10510 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IPN28_10525 PF02142 MGS-like domain IPN28_10525 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IPN28_10525 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IPN28_10530 PF03449 Transcription elongation factor, N-terminal IPN28_10530 PF01272 Transcription elongation factor, GreA/GreB, C-term IPN28_10545 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IPN28_10545 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IPN28_10560 PF04430 Protein of unknown function (DUF498/DUF598) IPN28_10565 PF02355 Protein export membrane protein IPN28_10565 PF07549 SecD/SecF GG Motif IPN28_10570 PF02355 Protein export membrane protein IPN28_10575 PF02699 Preprotein translocase subunit IPN28_10590 PF01476 LysM domain IPN28_10590 PF01551 Peptidase family M23 IPN28_10605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IPN28_10605 PF02403 Seryl-tRNA synthetase N-terminal domain IPN28_10620 PF03099 Biotin/lipoate A/B protein ligase family IPN28_10630 PF00390 Malic enzyme, N-terminal domain IPN28_10630 PF03949 Malic enzyme, NAD binding domain IPN28_10630 PF01515 Phosphate acetyl/butaryl transferase IPN28_10635 PF00571 CBS domain IPN28_10635 PF03448 MgtE intracellular N domain IPN28_10635 PF01769 Divalent cation transporter IPN28_10640 PF00912 Transglycosylase IPN28_10640 PF00905 Penicillin binding protein transpeptidase domain IPN28_10645 PF00075 RNase H IPN28_10650 PF01636 Phosphotransferase enzyme family IPN28_10655 PF02401 LytB protein IPN28_10665 PF13580 SIS domain IPN28_10670 PF00149 Calcineurin-like phosphoesterase IPN28_10675 PF02609 Exonuclease VII small subunit IPN28_10680 PF00348 Polyprenyl synthetase IPN28_10695 PF02779 Transketolase, pyrimidine binding domain IPN28_10695 PF02780 Transketolase, C-terminal domain IPN28_10695 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IPN28_10705 PF01343 Peptidase family S49 IPN28_10710 PF01613 Flavin reductase like domain IPN28_10715 PF01264 Chorismate synthase IPN28_10730 PF03061 Thioesterase superfamily IPN28_10750 PF16998 17 kDa outer membrane surface antigen IPN28_10750 PF05433 Glycine zipper 2TM domain IPN28_10755 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IPN28_10755 PF01243 Pyridoxamine 5'-phosphate oxidase IPN28_10760 PF00183 Hsp90 protein IPN28_10785 PF00155 Aminotransferase class I and II IPN28_10805 PF00294 pfkB family carbohydrate kinase IPN28_10815 PF01661 Macro domain IPN28_10820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IPN28_10845 PF00391 PEP-utilising enzyme, mobile domain IPN28_10845 PF02896 PEP-utilising enzyme, TIM barrel domain IPN28_10845 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IPN28_10860 PF00348 Polyprenyl synthetase IPN28_10885 PF06969 HemN C-terminal domain IPN28_10885 PF04055 Radical SAM superfamily IPN28_10895 PF01725 Ham1 family IPN28_10900 PF03725 3' exoribonuclease family, domain 2 IPN28_10900 PF01138 3' exoribonuclease family, domain 1 IPN28_10905 PF01628 HrcA protein C terminal domain IPN28_10915 PF01025 GrpE IPN28_10920 PF00012 Hsp70 protein IPN28_10925 PF00226 DnaJ domain IPN28_10925 PF01556 DnaJ C terminal domain IPN28_10925 PF00684 DnaJ central domain IPN28_10930 PF05173 Dihydrodipicolinate reductase, C-terminus IPN28_10930 PF01113 Dihydrodipicolinate reductase, N-terminus IPN28_10940 PF07494 Two component regulator propeller IPN28_10940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_10940 PF00512 His Kinase A (phospho-acceptor) domain IPN28_10940 PF12833 Helix-turn-helix domain IPN28_10940 PF00072 Response regulator receiver domain IPN28_10940 PF07495 Y_Y_Y domain IPN28_10945 PF00486 Transcriptional regulatory protein, C terminal IPN28_10945 PF00072 Response regulator receiver domain IPN28_10950 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IPN28_10950 PF12833 Helix-turn-helix domain IPN28_10950 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IPN28_10950 PF02805 Metal binding domain of Ada IPN28_10955 PF00730 HhH-GPD superfamily base excision DNA repair protein IPN28_10955 PF00633 Helix-hairpin-helix motif IPN28_10955 PF10576 Iron-sulfur binding domain of endonuclease III IPN28_10975 PF02151 UvrB/uvrC motif IPN28_10975 PF12826 Helix-hairpin-helix motif IPN28_10975 PF08459 UvrC Helix-hairpin-helix N-terminal IPN28_10975 PF01541 GIY-YIG catalytic domain IPN28_11040 PF02397 Bacterial sugar transferase IPN28_11050 PF00534 Glycosyl transferases group 1 IPN28_11050 PF13439 Glycosyltransferase Family 4 IPN28_11060 PF04230 Polysaccharide pyruvyl transferase IPN28_11070 PF00535 Glycosyl transferase family 2 IPN28_11075 PF00487 Fatty acid desaturase IPN28_11080 PF00994 Probable molybdopterin binding domain IPN28_11080 PF18146 Damage-inducible protein CinA KH domain IPN28_11080 PF02464 Competence-damaged protein IPN28_11085 PF00557 Metallopeptidase family M24 IPN28_11095 PF04002 RadC-like JAB domain IPN28_11100 PF03734 L,D-transpeptidase catalytic domain IPN28_11105 PF06940 Domain of unknown function (DUF1287) IPN28_11110 PF00206 Lyase IPN28_11110 PF10397 Adenylosuccinate lyase C-terminus IPN28_11115 PF00210 Ferritin-like domain IPN28_11125 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IPN28_11210 PF02151 UvrB/uvrC motif IPN28_11210 PF04851 Type III restriction enzyme, res subunit IPN28_11210 PF12344 Ultra-violet resistance protein B IPN28_11210 PF00271 Helicase conserved C-terminal domain IPN28_11210 PF17757 UvrB interaction domain IPN28_11230 PF01921 tRNA synthetases class I (K) IPN28_11250 PF13307 Helicase C-terminal domain IPN28_11250 PF04851 Type III restriction enzyme, res subunit IPN28_11250 PF00929 Exonuclease IPN28_11260 PF04715 Anthranilate synthase component I, N terminal region IPN28_11260 PF00425 chorismate binding enzyme IPN28_11265 PF00117 Glutamine amidotransferase class-I IPN28_11270 PF03641 Possible lysine decarboxylase IPN28_11280 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IPN28_11290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IPN28_11290 PF02874 ATP synthase alpha/beta family, beta-barrel domain IPN28_11300 PF00231 ATP synthase IPN28_11305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IPN28_11305 PF00306 ATP synthase alpha/beta chain, C terminal domain IPN28_11305 PF02874 ATP synthase alpha/beta family, beta-barrel domain IPN28_11310 PF00213 ATP synthase delta (OSCP) subunit IPN28_11315 PF05857 TraX protein IPN28_11340 PF00270 DEAD/DEAH box helicase IPN28_11340 PF17764 3′ DNA-binding domain (3′BD) IPN28_11340 PF18074 Primosomal protein N C-terminal domain IPN28_11340 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IPN28_11345 PF01266 FAD dependent oxidoreductase IPN28_11360 PF00923 Transaldolase/Fructose-6-phosphate aldolase IPN28_11380 PF02899 Phage integrase, N-terminal SAM-like domain IPN28_11380 PF00589 Phage integrase family IPN28_11400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IPN28_11400 PF07992 Pyridine nucleotide-disulphide oxidoreductase IPN28_11425 PF00364 Biotin-requiring enzyme IPN28_11425 PF02817 e3 binding domain IPN28_11425 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IPN28_11435 PF00586 AIR synthase related protein, N-terminal domain IPN28_11435 PF02769 AIR synthase related protein, C-terminal domain IPN28_11440 PF02581 Thiamine monophosphate synthase IPN28_11440 PF08543 Phosphomethylpyrimidine kinase IPN28_11445 PF02581 Thiamine monophosphate synthase IPN28_11455 PF16870 2-oxoglutarate dehydrogenase C-terminal IPN28_11455 PF00676 Dehydrogenase E1 component IPN28_11455 PF16078 2-oxoglutarate dehydrogenase N-terminus IPN28_11455 PF02779 Transketolase, pyrimidine binding domain IPN28_11480 PF00549 CoA-ligase IPN28_11480 PF02629 CoA binding domain IPN28_11495 PF00549 CoA-ligase IPN28_11495 PF08442 ATP-grasp domain IPN28_11505 PF01464 Transglycosylase SLT domain IPN28_11505 PF00497 Bacterial extracellular solute-binding proteins, family 3 IPN28_11515 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IPN28_11515 PF00056 lactate/malate dehydrogenase, NAD binding domain IPN28_11555 PF03969 AFG1-like ATPase IPN28_11560 PF00902 Sec-independent protein translocase protein (TatC) IPN28_11565 PF02416 mttA/Hcf106 family IPN28_11575 PF02416 mttA/Hcf106 family IPN28_11580 PF04079 Segregation and condensation complex subunit ScpB IPN28_11585 PF02616 Segregation and condensation protein ScpA IPN28_11590 PF00933 Glycosyl hydrolase family 3 N terminal domain IPN28_11600 PF13286 Phosphohydrolase-associated domain IPN28_11600 PF01966 HD domain IPN28_11615 PF01521 Iron-sulphur cluster biosynthesis IPN28_11670 PF01177 Asp/Glu/Hydantoin racemase IPN28_11675 PF00158 Sigma-54 interaction domain IPN28_11675 PF02954 Bacterial regulatory protein, Fis family IPN28_11675 PF00072 Response regulator receiver domain IPN28_11720 PF00072 Response regulator receiver domain IPN28_11720 PF00486 Transcriptional regulatory protein, C terminal IPN28_11730 PF00692 dUTPase IPN28_11735 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IPN28_11745 PF03734 L,D-transpeptidase catalytic domain IPN28_11755 PF03734 L,D-transpeptidase catalytic domain IPN28_11770 PF10150 Ribonuclease E/G family IPN28_11770 PF00575 S1 RNA binding domain IPN28_11775 PF02545 Maf-like protein IPN28_11780 PF01176 Translation initiation factor 1A / IF-1 IPN28_11785 PF06793 Uncharacterised protein family (UPF0262) IPN28_11790 PF01634 ATP phosphoribosyltransferase IPN28_11795 PF01256 Carbohydrate kinase IPN28_11795 PF03853 YjeF-related protein N-terminus IPN28_11830 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IPN28_11830 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IPN28_11835 PF01266 FAD dependent oxidoreductase IPN28_11835 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IPN28_11840 PF00072 Response regulator receiver domain IPN28_11845 PF08448 PAS fold IPN28_11845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_11845 PF00072 Response regulator receiver domain IPN28_11845 PF00512 His Kinase A (phospho-acceptor) domain IPN28_11845 PF13188 PAS domain IPN28_11865 PF00849 RNA pseudouridylate synthase IPN28_11875 PF00534 Glycosyl transferases group 1 IPN28_11875 PF13439 Glycosyltransferase Family 4 IPN28_11880 PF00072 Response regulator receiver domain IPN28_11960 PF03852 DNA mismatch endonuclease Vsr IPN28_11965 PF00145 C-5 cytosine-specific DNA methylase IPN28_12000 PF05593 RHS Repeat IPN28_12000 PF03527 RHS protein IPN28_12055 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system IPN28_12080 PF01022 Bacterial regulatory protein, arsR family IPN28_12115 PF11127 Protein of unknown function (DUF2892) IPN28_12115 PF00581 Rhodanese-like domain IPN28_12120 PF01022 Bacterial regulatory protein, arsR family IPN28_12125 PF02627 Carboxymuconolactone decarboxylase family IPN28_12150 PF00437 Type II/IV secretion system protein IPN28_12165 PF04972 BON domain IPN28_12165 PF00263 Bacterial type II and III secretion system protein IPN28_12165 PF13629 Pilus formation protein N terminal region IPN28_12210 PF00709 Adenylosuccinate synthetase IPN28_12215 PF13393 Histidyl-tRNA synthetase IPN28_12225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IPN28_12225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IPN28_12225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IPN28_12225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IPN28_12240 PF00004 ATPase family associated with various cellular activities (AAA) IPN28_12240 PF17862 AAA+ lid domain IPN28_12240 PF06480 FtsH Extracellular IPN28_12240 PF01434 Peptidase family M41 IPN28_12245 PF01171 PP-loop family IPN28_12255 PF00691 OmpA family IPN28_12265 PF04972 BON domain IPN28_12270 PF02021 Uncharacterised protein family UPF0102 IPN28_12275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IPN28_12280 PF04348 LppC putative lipoprotein IPN28_12290 PF16859 Tetracyclin repressor-like, C-terminal domain IPN28_12290 PF00440 Bacterial regulatory proteins, tetR family IPN28_12305 PF17773 UPF0176 acylphosphatase like domain IPN28_12305 PF00581 Rhodanese-like domain IPN28_12310 PF00708 Acylphosphatase IPN28_12325 PF04542 Sigma-70 region 2 IPN28_12325 PF08281 Sigma-70, region 4 IPN28_12345 PF00953 Glycosyl transferase family 4 IPN28_12355 PF01266 FAD dependent oxidoreductase IPN28_12355 PF05430 S-adenosyl-L-methionine-dependent methyltransferase IPN28_12360 PF01266 FAD dependent oxidoreductase IPN28_12360 PF05430 S-adenosyl-L-methionine-dependent methyltransferase IPN28_12365 PF01432 Peptidase family M3 IPN28_12375 PF00226 DnaJ domain IPN28_12375 PF05099 Tellurite resistance protein TerB IPN28_12385 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IPN28_12405 PF01050 Mannose-6-phosphate isomerase IPN28_12405 PF00483 Nucleotidyl transferase IPN28_12410 PF01370 NAD dependent epimerase/dehydratase family IPN28_12415 PF16363 GDP-mannose 4,6 dehydratase IPN28_12445 PF01370 NAD dependent epimerase/dehydratase family IPN28_12455 PF01300 Telomere recombination IPN28_12455 PF03481 Putative GTP-binding controlling metal-binding IPN28_12460 PF00912 Transglycosylase IPN28_12460 PF00905 Penicillin binding protein transpeptidase domain IPN28_12460 PF14814 Bifunctional transglycosylase second domain IPN28_12465 PF03702 Anhydro-N-acetylmuramic acid kinase IPN28_12470 PF00579 tRNA synthetases class I (W and Y) IPN28_12495 PF00578 AhpC/TSA family IPN28_12500 PF02129 X-Pro dipeptidyl-peptidase (S15 family) IPN28_12505 PF00266 Aminotransferase class-V IPN28_12510 PF00111 2Fe-2S iron-sulfur cluster binding domain IPN28_12575 PF00781 Diacylglycerol kinase catalytic domain IPN28_12600 PF08269 Cache domain IPN28_12600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPN28_12605 PF08269 Cache domain IPN28_12605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPN28_12650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IPN28_12655 PF00873 AcrB/AcrD/AcrF family IPN28_12660 PF08139 Prokaryotic membrane lipoprotein lipid attachment site IPN28_12660 PF02321 Outer membrane efflux protein IPN28_12665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IPN28_12665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IPN28_12665 PF02770 Acyl-CoA dehydrogenase, middle domain IPN28_12680 PF03062 MBOAT, membrane-bound O-acyltransferase family IPN28_12685 PF12708 Pectate lyase superfamily protein IPN28_12685 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IPN28_12685 PF08548 Peptidase M10 serralysin C terminal IPN28_12690 PF01263 Aldose 1-epimerase IPN28_12705 PF00483 Nucleotidyl transferase IPN28_12705 PF01050 Mannose-6-phosphate isomerase IPN28_12710 PF07238 PilZ domain IPN28_12720 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX IPN28_12720 PF16824 C-terminal carbohydrate-binding module IPN28_12730 PF05426 Alginate lyase IPN28_12735 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX IPN28_12735 PF16824 C-terminal carbohydrate-binding module IPN28_12740 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX IPN28_12745 PF13229 Right handed beta helix region IPN28_12750 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX IPN28_12755 PF11182 Alginate O-acetyl transferase AlgF IPN28_12760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IPN28_12760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IPN28_12760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IPN28_12760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IPN28_12770 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IPN28_12770 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IPN28_12770 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IPN28_12795 PF00881 Nitroreductase family IPN28_12800 PF13847 Methyltransferase domain IPN28_12815 PF05661 Protein of unknown function (DUF808) IPN28_12820 PF17210 SdrD B-like domain IPN28_12820 PF00746 LPXTG cell wall anchor motif IPN28_12820 PF17961 Bacterial Ig domain IPN28_12820 PF04650 YSIRK type signal peptide IPN28_12840 PF13087 AAA domain IPN28_12840 PF13091 PLD-like domain IPN28_12845 PF14490 Helix-hairpin-helix containing domain IPN28_12845 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain IPN28_12845 PF13538 UvrD-like helicase C-terminal domain IPN28_12920 PF09234 Domain of unknown function (DUF1963) IPN28_12930 PF00183 Hsp90 protein IPN28_12950 PF00145 C-5 cytosine-specific DNA methylase IPN28_12975 PF01266 FAD dependent oxidoreductase IPN28_12980 PF01266 FAD dependent oxidoreductase IPN28_12995 PF05690 Thiazole biosynthesis protein ThiG IPN28_13000 PF03030 Inorganic H+ pyrophosphatase IPN28_13010 PF00313 'Cold-shock' DNA-binding domain IPN28_13090 PF02690 Na+/Pi-cotransporter IPN28_13100 PF00535 Glycosyl transferase family 2 IPN28_13125 PF01925 Sulfite exporter TauE/SafE IPN28_13155 PF01638 HxlR-like helix-turn-helix IPN28_13180 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IPN28_13180 PF03900 Porphobilinogen deaminase, C-terminal domain IPN28_13185 PF00814 Glycoprotease family IPN28_13190 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IPN28_13190 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IPN28_13200 PF16177 Acetyl-coenzyme A synthetase N-terminus IPN28_13200 PF00501 AMP-binding enzyme IPN28_13200 PF13193 AMP-binding enzyme C-terminal domain IPN28_13215 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) IPN28_13225 PF03109 ABC1 family IPN28_13260 PF00571 CBS domain IPN28_13265 PF00005 ABC transporter IPN28_13305 PF00303 Thymidylate synthase IPN28_13310 PF00186 Dihydrofolate reductase IPN28_13315 PF10609 NUBPL iron-transfer P-loop NTPase IPN28_13320 PF01145 SPFH domain / Band 7 family IPN28_13325 PF01145 SPFH domain / Band 7 family IPN28_13330 PF13180 PDZ domain IPN28_13340 PF12728 Helix-turn-helix domain IPN28_13340 PF00145 C-5 cytosine-specific DNA methylase IPN28_13365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IPN28_13365 PF00205 Thiamine pyrophosphate enzyme, central domain IPN28_13365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IPN28_13385 PF02705 K+ potassium transporter IPN28_13390 PF10369 Small subunit of acetolactate synthase IPN28_13400 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IPN28_13400 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IPN28_13445 PF02911 Formyl transferase, C-terminal domain IPN28_13445 PF00551 Formyl transferase IPN28_13445 PF01370 NAD dependent epimerase/dehydratase family IPN28_13450 PF00072 Response regulator receiver domain IPN28_13455 PF01590 GAF domain IPN28_13455 PF00512 His Kinase A (phospho-acceptor) domain IPN28_13455 PF08446 PAS fold IPN28_13455 PF00360 Phytochrome region IPN28_13455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPN28_13460 PF02146 Sir2 family IPN28_13465 PF11741 AMIN domain IPN28_13465 PF01520 N-acetylmuramoyl-L-alanine amidase IPN28_13475 PF17969 L,D-transpeptidase C-terminal domain IPN28_13475 PF03734 L,D-transpeptidase catalytic domain IPN28_13495 PF13360 PQQ-like domain IPN28_13500 PF01926 50S ribosome-binding GTPase IPN28_13500 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IPN28_13510 PF00924 Mechanosensitive ion channel IPN28_13510 PF05552 Conserved TM helix IPN28_13520 PF00156 Phosphoribosyl transferase domain IPN28_13520 PF13537 Glutamine amidotransferase domain IPN28_13530 PF05198 Translation initiation factor IF-3, N-terminal domain IPN28_13530 PF00707 Translation initiation factor IF-3, C-terminal domain IPN28_13535 PF03129 Anticodon binding domain IPN28_13535 PF02824 TGS domain IPN28_13535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IPN28_13535 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IPN28_13545 PF00664 ABC transporter transmembrane region IPN28_13545 PF00005 ABC transporter IPN28_13560 PF00072 Response regulator receiver domain IPN28_13570 PF00072 Response regulator receiver domain IPN28_13580 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IPN28_13580 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IPN28_13580 PF01842 ACT domain