locus-tag class description D5400_00005 PF11638 DnaA N-terminal domain D5400_00005 PF00308 Bacterial dnaA protein D5400_00005 PF08299 Bacterial dnaA protein helix-turn-helix D5400_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain D5400_00010 PF02767 DNA polymerase III beta subunit, central domain D5400_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain D5400_00015 PF02463 RecF/RecN/SMC N terminal domain D5400_00020 PF00581 Rhodanese-like domain D5400_00020 PF00899 ThiF family D5400_00030 PF00009 Elongation factor Tu GTP binding domain D5400_00030 PF03144 Elongation factor Tu domain 2 D5400_00030 PF16658 Class II release factor RF3, C-terminal domain D5400_00035 PF00692 dUTPase D5400_00060 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D5400_00060 PF00132 Bacterial transferase hexapeptide (six repeats) D5400_00060 PF14602 Hexapeptide repeat of succinyl-transferase D5400_00070 PF07687 Peptidase dimerisation domain D5400_00070 PF01546 Peptidase family M20/M25/M40 D5400_00080 PF03358 NADPH-dependent FMN reductase D5400_00085 PF03960 ArsC family D5400_00095 PF10576 Iron-sulfur binding domain of endonuclease III D5400_00095 PF00633 Helix-hairpin-helix motif D5400_00095 PF00730 HhH-GPD superfamily base excision DNA repair protein D5400_00110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_00110 PF01627 Hpt domain D5400_00110 PF00072 Response regulator receiver domain D5400_00110 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5400_00110 PF00512 His Kinase A (phospho-acceptor) domain D5400_00110 PF00672 HAMP domain D5400_00115 PF01106 NifU-like domain D5400_00125 PF00579 tRNA synthetases class I (W and Y) D5400_00130 PF03023 Lipid II flippase MurJ D5400_00135 PF01909 Nucleotidyltransferase domain D5400_00135 PF01966 HD domain D5400_00135 PF08335 GlnD PII-uridylyltransferase D5400_00135 PF01842 ACT domain D5400_00140 PF01156 Inosine-uridine preferring nucleoside hydrolase D5400_00145 PF00011 Hsp20/alpha crystallin family D5400_00155 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D5400_00160 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D5400_00160 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus D5400_00165 PF00309 Sigma-54 factor, Activator interacting domain (AID) D5400_00165 PF04552 Sigma-54, DNA binding domain D5400_00165 PF04963 Sigma-54 factor, core binding domain D5400_00170 PF00005 ABC transporter D5400_00175 PF03968 OstA-like protein D5400_00185 PF01343 Peptidase family S49 D5400_00190 PF00216 Bacterial DNA-binding protein D5400_00200 PF02423 Ornithine cyclodeaminase/mu-crystallin family D5400_00210 PF10672 S-adenosylmethionine-dependent methyltransferase D5400_00210 PF17785 PUA-like domain D5400_00215 PF08032 RNA 2'-O ribose methyltransferase substrate binding D5400_00215 PF00588 SpoU rRNA Methylase family D5400_00220 PF01252 Signal peptidase (SPase) II D5400_00225 PF08240 Alcohol dehydrogenase GroES-like domain D5400_00225 PF00107 Zinc-binding dehydrogenase D5400_00230 PF00814 Glycoprotease family D5400_00240 PF01475 Ferric uptake regulator family D5400_00245 PF01553 Acyltransferase D5400_00250 PF00919 Uncharacterized protein family UPF0004 D5400_00250 PF01938 TRAM domain D5400_00250 PF04055 Radical SAM superfamily D5400_00255 PF02562 PhoH-like protein D5400_00260 PF02130 Uncharacterized protein family UPF0054 D5400_00265 PF00571 CBS domain D5400_00265 PF03471 Transporter associated domain D5400_00270 PF00795 Carbon-nitrogen hydrolase D5400_00275 PF01381 Helix-turn-helix D5400_00280 PF00438 S-adenosylmethionine synthetase, N-terminal domain D5400_00280 PF02772 S-adenosylmethionine synthetase, central domain D5400_00280 PF02773 S-adenosylmethionine synthetase, C-terminal domain D5400_00285 PF02390 Putative methyltransferase D5400_00290 PF02685 Glucokinase D5400_00295 PF02142 MGS-like domain D5400_00300 PF03411 Penicillin-insensitive murein endopeptidase D5400_00310 PF00535 Glycosyl transferase family 2 D5400_00320 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D5400_00320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D5400_00335 PF10576 Iron-sulfur binding domain of endonuclease III D5400_00335 PF00633 Helix-hairpin-helix motif D5400_00335 PF00730 HhH-GPD superfamily base excision DNA repair protein D5400_00340 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D5400_00340 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D5400_00345 PF00390 Malic enzyme, N-terminal domain D5400_00345 PF03949 Malic enzyme, NAD binding domain D5400_00345 PF01515 Phosphate acetyl/butaryl transferase D5400_00350 PF05192 MutS domain III D5400_00350 PF01624 MutS domain I D5400_00350 PF05190 MutS family domain IV D5400_00350 PF05188 MutS domain II D5400_00350 PF00488 MutS domain V D5400_00355 PF01025 GrpE D5400_00360 PF03458 UPF0126 domain D5400_00365 PF00294 pfkB family carbohydrate kinase D5400_00370 PF01416 tRNA pseudouridine synthase D5400_00375 PF00551 Formyl transferase D5400_00375 PF02911 Formyl transferase, C-terminal domain D5400_00380 PF01327 Polypeptide deformylase D5400_00390 PF00294 pfkB family carbohydrate kinase D5400_00395 PF07478 D-ala D-ala ligase C-terminus D5400_00395 PF01820 D-ala D-ala ligase N-terminus D5400_00405 PF01628 HrcA protein C terminal domain D5400_00410 PF03725 3' exoribonuclease family, domain 2 D5400_00410 PF01138 3' exoribonuclease family, domain 1 D5400_00420 PF01725 Ham1 family D5400_00425 PF04055 Radical SAM superfamily D5400_00425 PF06969 HemN C-terminal domain D5400_00435 PF00962 Adenosine/AMP deaminase D5400_00440 PF01676 Metalloenzyme superfamily D5400_00475 PF04972 BON domain D5400_00475 PF13629 Pilus formation protein N terminal region D5400_00475 PF00263 Bacterial type II and III secretion system protein D5400_00490 PF00437 Type II/IV secretion system protein D5400_00515 PF03928 Haem-degrading D5400_00520 PF00480 ROK family D5400_00525 PF00005 ABC transporter D5400_00525 PF17912 MalK OB fold domain D5400_00525 PF03459 TOBE domain D5400_00530 PF00528 Binding-protein-dependent transport system inner membrane component D5400_00540 PF01547 Bacterial extracellular solute-binding protein D5400_00545 PF00356 Bacterial regulatory proteins, lacI family D5400_00555 PF17243 POTRA domain TamA domain 1 D5400_00555 PF01103 Surface antigen D5400_00555 PF07244 Surface antigen variable number repeat D5400_00580 PF00986 DNA gyrase B subunit, carboxyl terminus D5400_00580 PF00204 DNA gyrase B D5400_00580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_00580 PF01751 Toprim domain D5400_00585 PF03472 Autoinducer binding domain D5400_00585 PF00196 Bacterial regulatory proteins, luxR family D5400_00590 PF01968 Hydantoinase/oxoprolinase D5400_00590 PF05378 Hydantoinase/oxoprolinase N-terminal region D5400_00595 PF01274 Malate synthase D5400_00605 PF03734 L,D-transpeptidase catalytic domain D5400_00605 PF17969 L,D-transpeptidase C-terminal domain D5400_00615 PF00072 Response regulator receiver domain D5400_00620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_00620 PF00512 His Kinase A (phospho-acceptor) domain D5400_00625 PF08482 ATP-dependent helicase C-terminal D5400_00625 PF04408 Helicase associated domain (HA2) D5400_00625 PF00271 Helicase conserved C-terminal domain D5400_00625 PF00270 DEAD/DEAH box helicase D5400_00630 PF00005 ABC transporter D5400_00635 PF00528 Binding-protein-dependent transport system inner membrane component D5400_00640 PF13416 Bacterial extracellular solute-binding protein D5400_00645 PF01926 50S ribosome-binding GTPase D5400_00650 PF14849 YidC periplasmic domain D5400_00650 PF02096 60Kd inner membrane protein D5400_00655 PF00825 Ribonuclease P D5400_00660 PF00468 Ribosomal protein L34 D5400_00670 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5400_00670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D5400_00675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_00675 PF00512 His Kinase A (phospho-acceptor) domain D5400_00675 PF00989 PAS fold D5400_00745 PF00436 Single-strand binding protein family D5400_00750 PF13411 MerR HTH family regulatory protein D5400_00755 PF02411 MerT mercuric transport protein D5400_00770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D5400_00770 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5400_00790 PF00589 Phage integrase family D5400_00790 PF02899 Phage integrase, N-terminal SAM-like domain D5400_00795 PF01381 Helix-turn-helix D5400_00835 PF10502 Signal peptidase, peptidase S26 D5400_00845 PF01551 Peptidase family M23 D5400_00845 PF01464 Transglycosylase SLT domain D5400_00845 PF10145 Phage-related minor tail protein D5400_00855 PF02534 Type IV secretory system Conjugative DNA transfer D5400_00865 PF01252 Signal peptidase (SPase) II D5400_00875 PF00795 Carbon-nitrogen hydrolase D5400_00880 PF02683 Cytochrome C biogenesis protein transmembrane region D5400_00890 PF01566 Natural resistance-associated macrophage protein D5400_00900 PF13462 Thioredoxin D5400_00910 PF17969 L,D-transpeptidase C-terminal domain D5400_00910 PF03734 L,D-transpeptidase catalytic domain D5400_00925 PF03734 L,D-transpeptidase catalytic domain D5400_00925 PF01476 LysM domain D5400_00925 PF17969 L,D-transpeptidase C-terminal domain D5400_00935 PF03734 L,D-transpeptidase catalytic domain D5400_00955 PF00376 MerR family regulatory protein D5400_00955 PF09278 MerR, DNA binding D5400_00970 PF00403 Heavy-metal-associated domain D5400_00980 PF02630 SCO1/SenC D5400_00985 PF02600 Disulfide bond formation protein DsbB D5400_00995 PF01545 Cation efflux family D5400_01010 PF00072 Response regulator receiver domain D5400_01010 PF00486 Transcriptional regulatory protein, C terminal D5400_01015 PF00033 Cytochrome b/b6/petB D5400_01015 PF00032 Cytochrome b(C-terminal)/b6/petD D5400_01020 PF13411 MerR HTH family regulatory protein D5400_01030 PF00398 Ribosomal RNA adenine dimethylase D5400_01040 PF01551 Peptidase family M23 D5400_01040 PF01464 Transglycosylase SLT domain D5400_01040 PF10145 Phage-related minor tail protein D5400_01050 PF13520 Amino acid permease D5400_01055 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D5400_01055 PF01578 Cytochrome C assembly protein D5400_01060 PF08534 Redoxin D5400_01070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_01070 PF03466 LysR substrate binding domain D5400_01075 PF00437 Type II/IV secretion system protein D5400_01080 PF04956 TrbC/VIRB2 family D5400_01090 PF03135 CagE, TrbE, VirB family, component of type IV transporter system D5400_01105 PF04610 TrbL/VirB6 plasmid conjugal transfer protein D5400_01115 PF03524 Conjugal transfer protein D5400_01120 PF03743 Bacterial conjugation TrbI-like protein D5400_01140 PF00004 ATPase family associated with various cellular activities (AAA) D5400_01180 PF03601 Conserved hypothetical protein 698 D5400_01185 PF01641 SelR domain D5400_01200 PF00696 Amino acid kinase family D5400_01205 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D5400_01205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D5400_01220 PF07977 FabA-like domain D5400_01225 PF00109 Beta-ketoacyl synthase, N-terminal domain D5400_01225 PF02801 Beta-ketoacyl synthase, C-terminal domain D5400_01235 PF01546 Peptidase family M20/M25/M40 D5400_01235 PF07687 Peptidase dimerisation domain D5400_01255 PF00905 Penicillin binding protein transpeptidase domain D5400_01255 PF00912 Transglycosylase D5400_01260 PF00012 Hsp70 protein D5400_01265 PF00226 DnaJ domain D5400_01265 PF01556 DnaJ C terminal domain D5400_01265 PF00684 DnaJ central domain D5400_01270 PF13649 Methyltransferase domain D5400_01275 PF03358 NADPH-dependent FMN reductase D5400_01280 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D5400_01295 PF02673 Bacitracin resistance protein BacA D5400_01300 PF00043 Glutathione S-transferase, C-terminal domain D5400_01300 PF13417 Glutathione S-transferase, N-terminal domain D5400_01305 PF08331 Domain of unknown function (DUF1730) D5400_01315 PF03330 Lytic transglycolase D5400_01320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5400_01325 PF00005 ABC transporter D5400_01325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D5400_01330 PF00528 Binding-protein-dependent transport system inner membrane component D5400_01330 PF12911 N-terminal TM domain of oligopeptide transport permease C D5400_01335 PF00528 Binding-protein-dependent transport system inner membrane component D5400_01340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D5400_01345 PF07687 Peptidase dimerisation domain D5400_01345 PF01546 Peptidase family M20/M25/M40 D5400_01360 PF02132 RecR protein D5400_01360 PF13662 Toprim domain D5400_01365 PF02575 YbaB/EbfC DNA-binding family D5400_01370 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding D5400_01370 PF12170 DNA polymerase III tau subunit V interacting with alpha D5400_01370 PF12169 DNA polymerase III subunits gamma and tau domain III D5400_01385 PF00293 NUDIX domain D5400_01385 PF09297 NADH pyrophosphatase zinc ribbon domain D5400_01390 PF01842 ACT domain D5400_01390 PF00800 Prephenate dehydratase D5400_01390 PF01817 Chorismate mutase type II D5400_01395 PF02348 Cytidylyltransferase D5400_01400 PF00034 Cytochrome c D5400_01405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D5400_01410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D5400_01415 PF00528 Binding-protein-dependent transport system inner membrane component D5400_01420 PF12911 N-terminal TM domain of oligopeptide transport permease C D5400_01420 PF00528 Binding-protein-dependent transport system inner membrane component D5400_01430 PF01850 PIN domain D5400_01435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D5400_01435 PF00005 ABC transporter D5400_01440 PF00293 NUDIX domain D5400_01445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D5400_01455 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain D5400_01455 PF00877 NlpC/P60 family D5400_01465 PF00883 Cytosol aminopeptidase family, catalytic domain D5400_01465 PF02789 Cytosol aminopeptidase family, N-terminal domain D5400_01475 PF00009 Elongation factor Tu GTP binding domain D5400_01475 PF03144 Elongation factor Tu domain 2 D5400_01475 PF06421 GTP-binding protein LepA C-terminus D5400_01475 PF00679 Elongation factor G C-terminus D5400_01485 PF00487 Fatty acid desaturase D5400_01490 PF02028 BCCT, betaine/carnitine/choline family transporter D5400_01500 PF00528 Binding-protein-dependent transport system inner membrane component D5400_01505 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5400_01510 PF00392 Bacterial regulatory proteins, gntR family D5400_01510 PF07729 FCD domain D5400_01520 PF00753 Metallo-beta-lactamase superfamily D5400_01535 PF00266 Aminotransferase class-V D5400_01540 PF00892 EamA-like transporter family D5400_01550 PF01367 5'-3' exonuclease, C-terminal SAM fold D5400_01550 PF01612 3'-5' exonuclease D5400_01550 PF00476 DNA polymerase family A D5400_01550 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D5400_01565 PF01235 Sodium:alanine symporter family D5400_01570 PF00583 Acetyltransferase (GNAT) family D5400_01600 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D5400_01600 PF00013 KH domain D5400_01600 PF00575 S1 RNA binding domain D5400_01600 PF01138 3' exoribonuclease family, domain 1 D5400_01600 PF03725 3' exoribonuclease family, domain 2 D5400_01605 PF00312 Ribosomal protein S15 D5400_01610 PF13426 PAS domain D5400_01610 PF07536 HWE histidine kinase D5400_01610 PF13581 Histidine kinase-like ATPase domain D5400_01615 PF01509 TruB family pseudouridylate synthase (N terminal domain) D5400_01615 PF16198 tRNA pseudouridylate synthase B C-terminal domain D5400_01615 PF09157 Pseudouridine synthase II TruB, C-terminal D5400_01620 PF02033 Ribosome-binding factor A D5400_01625 PF11987 Translation-initiation factor 2 D5400_01625 PF08364 Bacterial translation initiation factor IF-2 associated region D5400_01625 PF04760 Translation initiation factor IF-2, N-terminal region D5400_01625 PF00009 Elongation factor Tu GTP binding domain D5400_01635 PF00575 S1 RNA binding domain D5400_01635 PF13184 NusA-like KH domain D5400_01635 PF08529 NusA N-terminal domain D5400_01640 PF02576 RimP N-terminal domain D5400_01640 PF17384 RimP C-terminal SH3 domain D5400_01645 PF00005 ABC transporter D5400_01645 PF00664 ABC transporter transmembrane region D5400_01650 PF01113 Dihydrodipicolinate reductase, N-terminus D5400_01650 PF05173 Dihydrodipicolinate reductase, C-terminus D5400_01655 PF04102 SlyX D5400_01670 PF02653 Branched-chain amino acid transport system / permease component D5400_01680 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D5400_01685 PF01048 Phosphorylase superfamily D5400_01690 PF01791 DeoC/LacD family aldolase D5400_01695 PF02885 Glycosyl transferase family, helical bundle domain D5400_01695 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain D5400_01695 PF00591 Glycosyl transferase family, a/b domain D5400_01710 PF00465 Iron-containing alcohol dehydrogenase D5400_01715 PF00171 Aldehyde dehydrogenase family D5400_01720 PF03951 Glutamine synthetase, beta-Grasp domain D5400_01720 PF00120 Glutamine synthetase, catalytic domain D5400_01730 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_01750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D5400_01755 PF02021 Uncharacterised protein family UPF0102 D5400_01760 PF02951 Prokaryotic glutathione synthetase, N-terminal domain D5400_01760 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain D5400_01765 PF01078 Magnesium chelatase, subunit ChlI D5400_01765 PF13335 Magnesium chelatase, subunit ChlI C-terminal D5400_01770 PF01048 Phosphorylase superfamily D5400_01775 PF00351 Biopterin-dependent aromatic amino acid hydroxylase D5400_01780 PF01037 Lrp/AsnC ligand binding domain D5400_01785 PF02322 Cytochrome bd terminal oxidase subunit II D5400_01790 PF01654 Cytochrome bd terminal oxidase subunit I D5400_01820 PF05198 Translation initiation factor IF-3, N-terminal domain D5400_01820 PF00707 Translation initiation factor IF-3, C-terminal domain D5400_01825 PF04191 Phospholipid methyltransferase D5400_01830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D5400_01835 PF01632 Ribosomal protein L35 D5400_01840 PF00453 Ribosomal protein L20 D5400_01850 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D5400_01850 PF01409 tRNA synthetases class II core domain (F) D5400_01870 PF03483 B3/4 domain D5400_01870 PF03147 Ferredoxin-fold anticodon binding domain D5400_01870 PF01588 Putative tRNA binding domain D5400_01870 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D5400_01870 PF03484 tRNA synthetase B5 domain D5400_01875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5400_01875 PF08447 PAS fold D5400_01875 PF13426 PAS domain D5400_01885 PF01625 Peptide methionine sulfoxide reductase D5400_01915 PF04199 Putative cyclase D5400_01925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D5400_01930 PF00528 Binding-protein-dependent transport system inner membrane component D5400_01935 PF00528 Binding-protein-dependent transport system inner membrane component D5400_01935 PF12911 N-terminal TM domain of oligopeptide transport permease C D5400_01940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D5400_01940 PF00005 ABC transporter D5400_01945 PF00005 ABC transporter D5400_01945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D5400_01950 PF02634 FdhD/NarQ family D5400_01955 PF00384 Molybdopterin oxidoreductase D5400_01960 PF00072 Response regulator receiver domain D5400_01960 PF00196 Bacterial regulatory proteins, luxR family D5400_01965 PF00765 Autoinducer synthase D5400_01980 PF03006 Haemolysin-III related D5400_01985 PF07729 FCD domain D5400_01985 PF00392 Bacterial regulatory proteins, gntR family D5400_01990 PF00180 Isocitrate/isopropylmalate dehydrogenase D5400_01995 PF00180 Isocitrate/isopropylmalate dehydrogenase D5400_02030 PF01970 Tripartite tricarboxylate transporter TctA family D5400_02040 PF00561 alpha/beta hydrolase fold D5400_02045 PF13378 Enolase C-terminal domain-like D5400_02045 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D5400_02075 PF05145 Transition state regulatory protein AbrB D5400_02080 PF13378 Enolase C-terminal domain-like D5400_02100 PF03552 Cellulose synthase D5400_02100 PF07238 PilZ domain D5400_02100 PF00535 Glycosyl transferase family 2 D5400_02110 PF02515 CoA-transferase family III D5400_02115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D5400_02115 PF02770 Acyl-CoA dehydrogenase, middle domain D5400_02115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D5400_02120 PF03972 MmgE/PrpD family D5400_02125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_02125 PF03466 LysR substrate binding domain D5400_02130 PF00476 DNA polymerase family A D5400_02130 PF01612 3'-5' exonuclease D5400_02140 PF00575 S1 RNA binding domain D5400_02145 PF02224 Cytidylate kinase D5400_02150 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D5400_02175 PF07729 FCD domain D5400_02175 PF00392 Bacterial regulatory proteins, gntR family D5400_02185 PF00528 Binding-protein-dependent transport system inner membrane component D5400_02190 PF00005 ABC transporter D5400_02195 PF00528 Binding-protein-dependent transport system inner membrane component D5400_02200 PF01557 Fumarylacetoacetate (FAA) hydrolase family D5400_02205 PF01925 Sulfite exporter TauE/SafE D5400_02210 PF01569 PAP2 superfamily D5400_02215 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D5400_02215 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D5400_02225 PF01042 Endoribonuclease L-PSP D5400_02240 PF03466 LysR substrate binding domain D5400_02240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_02250 PF02614 Glucuronate isomerase D5400_02255 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_02260 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D5400_02265 PF03480 Bacterial extracellular solute-binding protein, family 7 D5400_02275 PF00392 Bacterial regulatory proteins, gntR family D5400_02275 PF07729 FCD domain D5400_02280 PF03786 D-mannonate dehydratase (UxuA) D5400_02285 PF01232 Mannitol dehydrogenase Rossmann domain D5400_02285 PF08125 Mannitol dehydrogenase C-terminal domain D5400_02290 PF00294 pfkB family carbohydrate kinase D5400_02295 PF03466 LysR substrate binding domain D5400_02295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_02300 PF00202 Aminotransferase class-III D5400_02305 PF14542 GCN5-related N-acetyl-transferase D5400_02310 PF02678 Pirin D5400_02310 PF05726 Pirin C-terminal cupin domain D5400_02315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_02315 PF03466 LysR substrate binding domain D5400_02335 PF00005 ABC transporter D5400_02340 PF00528 Binding-protein-dependent transport system inner membrane component D5400_02345 PF00528 Binding-protein-dependent transport system inner membrane component D5400_02350 PF13416 Bacterial extracellular solute-binding protein D5400_02360 PF00528 Binding-protein-dependent transport system inner membrane component D5400_02365 PF00005 ABC transporter D5400_02365 PF08402 TOBE domain D5400_02370 PF03466 LysR substrate binding domain D5400_02370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_02375 PF00106 short chain dehydrogenase D5400_02405 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D5400_02410 PF00291 Pyridoxal-phosphate dependent enzyme D5400_02415 PF00290 Tryptophan synthase alpha chain D5400_02420 PF01039 Carboxyl transferase domain D5400_02425 PF08245 Mur ligase middle domain D5400_02425 PF02875 Mur ligase family, glutamate ligase domain D5400_02430 PF00085 Thioredoxin D5400_02435 PF13361 UvrD-like helicase C-terminal domain D5400_02435 PF00580 UvrD/REP helicase N-terminal domain D5400_02435 PF12705 PD-(D/E)XK nuclease superfamily D5400_02440 PF12705 PD-(D/E)XK nuclease superfamily D5400_02445 PF12804 MobA-like NTP transferase domain D5400_02450 PF01636 Phosphotransferase enzyme family D5400_02455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_02455 PF00512 His Kinase A (phospho-acceptor) domain D5400_02460 PF05221 S-adenosyl-L-homocysteine hydrolase D5400_02460 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain D5400_02465 PF00381 PTS HPr component phosphorylation site D5400_02470 PF03830 PTS system sorbose subfamily IIB component D5400_02470 PF03610 PTS system fructose IIA component D5400_02475 PF02603 HPr Serine kinase N terminus D5400_02475 PF07475 HPr Serine kinase C-terminal domain D5400_02480 PF13755 Sensor N-terminal transmembrane domain D5400_02480 PF00672 HAMP domain D5400_02480 PF00512 His Kinase A (phospho-acceptor) domain D5400_02480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_02480 PF13756 Stimulus-sensing domain D5400_02485 PF00486 Transcriptional regulatory protein, C terminal D5400_02485 PF00072 Response regulator receiver domain D5400_02490 PF01293 Phosphoenolpyruvate carboxykinase D5400_02495 PF00472 RF-1 domain D5400_02500 PF13532 2OG-Fe(II) oxygenase superfamily D5400_02510 PF00485 Phosphoribulokinase / Uridine kinase family D5400_02515 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D5400_02520 PF00977 Histidine biosynthesis protein D5400_02525 PF00977 Histidine biosynthesis protein D5400_02530 PF00117 Glutamine amidotransferase class-I D5400_02540 PF00475 Imidazoleglycerol-phosphate dehydratase D5400_02545 PF00227 Proteasome subunit D5400_02550 PF10431 C-terminal, D2-small domain, of ClpB protein D5400_02550 PF07724 AAA domain (Cdc48 subfamily) D5400_02550 PF00004 ATPase family associated with various cellular activities (AAA) D5400_02580 PF04186 FxsA cytoplasmic membrane protein D5400_02585 PF02556 Preprotein translocase subunit SecB D5400_02590 PF00929 Exonuclease D5400_02595 PF01121 Dephospho-CoA kinase D5400_02600 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D5400_02600 PF01488 Shikimate / quinate 5-dehydrogenase D5400_02600 PF08501 Shikimate dehydrogenase substrate binding domain D5400_02605 PF02545 Maf-like protein D5400_02610 PF03618 Kinase/pyrophosphorylase D5400_02615 PF01208 Uroporphyrinogen decarboxylase (URO-D) D5400_02625 PF07497 Rho termination factor, RNA-binding domain D5400_02625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5400_02625 PF07498 Rho termination factor, N-terminal domain D5400_02630 PF12631 MnmE helical domain D5400_02630 PF10396 GTP-binding protein TrmE N-terminus D5400_02630 PF01926 50S ribosome-binding GTPase D5400_02635 PF13932 GidA associated domain D5400_02635 PF01134 Glucose inhibited division protein A D5400_02640 PF02527 rRNA small subunit methyltransferase G D5400_02645 PF13614 AAA domain D5400_02650 PF17762 HTH domain found in ParB protein D5400_02650 PF02195 ParB-like nuclease domain D5400_02665 PF00133 tRNA synthetases class I (I, L, M and V) D5400_02665 PF09334 tRNA synthetases class I (M) D5400_02665 PF13603 Leucyl-tRNA synthetase, Domain 2 D5400_02665 PF08264 Anticodon-binding domain of tRNA D5400_02670 PF01168 Alanine racemase, N-terminal domain D5400_02680 PF01808 AICARFT/IMPCHase bienzyme D5400_02680 PF02142 MGS-like domain D5400_02690 PF01189 16S rRNA methyltransferase RsmB/F D5400_02690 PF01029 NusB family D5400_02695 PF01435 Peptidase family M48 D5400_02715 PF13193 AMP-binding enzyme C-terminal domain D5400_02715 PF00501 AMP-binding enzyme D5400_02715 PF16177 Acetyl-coenzyme A synthetase N-terminus D5400_02730 PF16177 Acetyl-coenzyme A synthetase N-terminus D5400_02730 PF00501 AMP-binding enzyme D5400_02730 PF13193 AMP-binding enzyme C-terminal domain D5400_02735 PF05088 Bacterial NAD-glutamate dehydrogenase D5400_02750 PF08543 Phosphomethylpyrimidine kinase D5400_02755 PF00484 Carbonic anhydrase D5400_02765 PF01118 Semialdehyde dehydrogenase, NAD binding domain D5400_02765 PF02774 Semialdehyde dehydrogenase, dimerisation domain D5400_02770 PF06224 Winged helix DNA-binding domain D5400_02775 PF00180 Isocitrate/isopropylmalate dehydrogenase D5400_02780 PF00909 Ammonium Transporter Family D5400_02785 PF00543 Nitrogen regulatory protein P-II D5400_02795 PF01494 FAD binding domain D5400_02800 PF03966 Trm112p-like protein D5400_02805 PF00004 ATPase family associated with various cellular activities (AAA) D5400_02805 PF05362 Lon protease (S16) C-terminal proteolytic domain D5400_02805 PF02190 ATP-dependent protease La (LON) substrate-binding domain D5400_02810 PF00085 Thioredoxin D5400_02825 PF02347 Glycine cleavage system P-protein D5400_02830 PF01597 Glycine cleavage H-protein D5400_02835 PF08669 Glycine cleavage T-protein C-terminal barrel domain D5400_02835 PF01571 Aminomethyltransferase folate-binding domain D5400_02840 PF00672 HAMP domain D5400_02840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5400_02860 PF03328 HpcH/HpaI aldolase/citrate lyase family D5400_02875 PF00694 Aconitase C-terminal domain D5400_02885 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D5400_02885 PF01580 FtsK/SpoIIIE family D5400_02885 PF17854 FtsK alpha domain D5400_02885 PF09397 Ftsk gamma domain D5400_02890 PF03548 Outer membrane lipoprotein carrier protein LolA D5400_02900 PF06055 Exopolysaccharide synthesis, ExoD D5400_02915 PF00486 Transcriptional regulatory protein, C terminal D5400_02915 PF00072 Response regulator receiver domain D5400_02940 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D5400_02940 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D5400_02945 PF00814 Glycoprotease family D5400_02950 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D5400_02950 PF03900 Porphobilinogen deaminase, C-terminal domain D5400_02975 PF00117 Glutamine amidotransferase class-I D5400_02980 PF02325 YGGT family D5400_02985 PF00719 Inorganic pyrophosphatase D5400_02990 PF00583 Acetyltransferase (GNAT) family D5400_03000 PF01432 Peptidase family M3 D5400_03010 PF07690 Major Facilitator Superfamily D5400_03015 PF00764 Arginosuccinate synthase D5400_03030 PF04055 Radical SAM superfamily D5400_03040 PF04545 Sigma-70, region 4 D5400_03040 PF04542 Sigma-70 region 2 D5400_03050 PF01329 Pterin 4 alpha carbinolamine dehydratase D5400_03055 PF02834 LigT like Phosphoesterase D5400_03060 PF13472 GDSL-like Lipase/Acylhydrolase family D5400_03065 PF00005 ABC transporter D5400_03075 PF01027 Inhibitor of apoptosis-promoting Bax1 D5400_03095 PF00330 Aconitase family (aconitate hydratase) D5400_03095 PF00694 Aconitase C-terminal domain D5400_03100 PF00005 ABC transporter D5400_03105 PF03379 CcmB protein D5400_03110 PF01578 Cytochrome C assembly protein D5400_03120 PF08534 Redoxin D5400_03125 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D5400_03130 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D5400_03135 PF04279 Intracellular septation protein A D5400_03140 PF00448 SRP54-type protein, GTPase domain D5400_03140 PF02881 SRP54-type protein, helical bundle domain D5400_03145 PF00919 Uncharacterized protein family UPF0004 D5400_03145 PF04055 Radical SAM superfamily D5400_03150 PF01678 Diaminopimelate epimerase D5400_03155 PF12706 Beta-lactamase superfamily domain D5400_03165 PF00448 SRP54-type protein, GTPase domain D5400_03165 PF02978 Signal peptide binding domain D5400_03165 PF02881 SRP54-type protein, helical bundle domain D5400_03170 PF02153 Prephenate dehydrogenase D5400_03170 PF01817 Chorismate mutase type II D5400_03175 PF00886 Ribosomal protein S16 D5400_03180 PF05239 PRC-barrel domain D5400_03180 PF01782 RimM N-terminal domain D5400_03185 PF01746 tRNA (Guanine-1)-methyltransferase D5400_03190 PF01245 Ribosomal protein L19 D5400_03195 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5400_03200 PF00528 Binding-protein-dependent transport system inner membrane component D5400_03205 PF00330 Aconitase family (aconitate hydratase) D5400_03210 PF00990 Diguanylate cyclase, GGDEF domain D5400_03230 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D5400_03240 PF00890 FAD binding domain D5400_03240 PF02910 Fumarate reductase flavoprotein C-term D5400_03245 PF13085 2Fe-2S iron-sulfur cluster binding domain D5400_03245 PF13237 4Fe-4S dicluster domain D5400_03255 PF02566 OsmC-like protein D5400_03260 PF01625 Peptide methionine sulfoxide reductase D5400_03265 PF02974 Protease inhibitor Inh D5400_03270 PF03969 AFG1-like ATPase D5400_03275 PF00056 lactate/malate dehydrogenase, NAD binding domain D5400_03275 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D5400_03280 PF00549 CoA-ligase D5400_03280 PF08442 ATP-grasp domain D5400_03285 PF02629 CoA binding domain D5400_03285 PF00549 CoA-ligase D5400_03290 PF16078 2-oxoglutarate dehydrogenase N-terminus D5400_03290 PF00676 Dehydrogenase E1 component D5400_03290 PF16870 2-oxoglutarate dehydrogenase C-terminal D5400_03290 PF02779 Transketolase, pyrimidine binding domain D5400_03295 PF02817 e3 binding domain D5400_03295 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D5400_03295 PF00364 Biotin-requiring enzyme D5400_03300 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D5400_03300 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5400_03320 PF00589 Phage integrase family D5400_03320 PF02899 Phage integrase, N-terminal SAM-like domain D5400_03330 PF00486 Transcriptional regulatory protein, C terminal D5400_03330 PF00072 Response regulator receiver domain D5400_03335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_03335 PF08521 Two-component sensor kinase N-terminal D5400_03335 PF00512 His Kinase A (phospho-acceptor) domain D5400_03350 PF01970 Tripartite tricarboxylate transporter TctA family D5400_03355 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal D5400_03355 PF00676 Dehydrogenase E1 component D5400_03360 PF02780 Transketolase, C-terminal domain D5400_03360 PF02779 Transketolase, pyrimidine binding domain D5400_03365 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D5400_03365 PF02817 e3 binding domain D5400_03365 PF00364 Biotin-requiring enzyme D5400_03370 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5400_03370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D5400_03380 PF00923 Transaldolase/Fructose-6-phosphate aldolase D5400_03385 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D5400_03385 PF00270 DEAD/DEAH box helicase D5400_03385 PF17764 3′ DNA-binding domain (3′BD) D5400_03385 PF18074 Primosomal protein N C-terminal domain D5400_03395 PF00213 ATP synthase delta (OSCP) subunit D5400_03400 PF02874 ATP synthase alpha/beta family, beta-barrel domain D5400_03400 PF00306 ATP synthase alpha/beta chain, C terminal domain D5400_03400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5400_03405 PF00231 ATP synthase D5400_03410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5400_03410 PF02874 ATP synthase alpha/beta family, beta-barrel domain D5400_03415 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D5400_03430 PF13180 PDZ domain D5400_03430 PF03572 Peptidase family S41 D5400_03435 PF01551 Peptidase family M23 D5400_03445 PF02590 Predicted SPOUT methyltransferase D5400_03450 PF01018 GTP1/OBG D5400_03450 PF01926 50S ribosome-binding GTPase D5400_03455 PF00696 Amino acid kinase family D5400_03455 PF01472 PUA domain D5400_03460 PF00171 Aldehyde dehydrogenase family D5400_03465 PF01467 Cytidylyltransferase-like D5400_03485 PF01016 Ribosomal L27 protein D5400_03490 PF00829 Ribosomal prokaryotic L21 protein D5400_03525 PF07729 FCD domain D5400_03525 PF00392 Bacterial regulatory proteins, gntR family D5400_03530 PF03480 Bacterial extracellular solute-binding protein, family 7 D5400_03540 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_03550 PF01370 NAD dependent epimerase/dehydratase family D5400_03565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D5400_03570 PF00106 short chain dehydrogenase D5400_03585 PF01584 CheW-like domain D5400_03590 PF00672 HAMP domain D5400_03590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5400_03600 PF01546 Peptidase family M20/M25/M40 D5400_03600 PF07687 Peptidase dimerisation domain D5400_03605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D5400_03605 PF00005 ABC transporter D5400_03610 PF00005 ABC transporter D5400_03610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D5400_03615 PF12911 N-terminal TM domain of oligopeptide transport permease C D5400_03615 PF00528 Binding-protein-dependent transport system inner membrane component D5400_03620 PF00528 Binding-protein-dependent transport system inner membrane component D5400_03625 PF01546 Peptidase family M20/M25/M40 D5400_03625 PF07687 Peptidase dimerisation domain D5400_03630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D5400_03640 PF00155 Aminotransferase class I and II D5400_03660 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_03680 PF00355 Rieske [2Fe-2S] domain D5400_03685 PF00175 Oxidoreductase NAD-binding domain D5400_03685 PF00970 Oxidoreductase FAD-binding domain D5400_03685 PF00111 2Fe-2S iron-sulfur cluster binding domain D5400_03690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D5400_03690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D5400_03695 PF09084 NMT1/THI5 like D5400_03705 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_03715 PF00596 Class II Aldolase and Adducin N-terminal domain D5400_03720 PF03466 LysR substrate binding domain D5400_03720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_03725 PF00205 Thiamine pyrophosphate enzyme, central domain D5400_03725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D5400_03725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D5400_03730 PF00171 Aldehyde dehydrogenase family D5400_03735 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_03750 PF03466 LysR substrate binding domain D5400_03750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_03770 PF00676 Dehydrogenase E1 component D5400_03775 PF02780 Transketolase, C-terminal domain D5400_03775 PF02779 Transketolase, pyrimidine binding domain D5400_03775 PF00364 Biotin-requiring enzyme D5400_03780 PF00676 Dehydrogenase E1 component D5400_03785 PF02780 Transketolase, C-terminal domain D5400_03785 PF02779 Transketolase, pyrimidine binding domain D5400_03795 PF00004 ATPase family associated with various cellular activities (AAA) D5400_03795 PF17862 AAA+ lid domain D5400_03795 PF01434 Peptidase family M41 D5400_03830 PF07976 Phenol hydroxylase, C-terminal dimerisation domain D5400_03830 PF01494 FAD binding domain D5400_03835 PF01370 NAD dependent epimerase/dehydratase family D5400_03855 PF13439 Glycosyltransferase Family 4 D5400_03855 PF00534 Glycosyl transferases group 1 D5400_03865 PF01479 S4 domain D5400_03880 PF00561 alpha/beta hydrolase fold D5400_03890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_03890 PF03466 LysR substrate binding domain D5400_03895 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D5400_03905 PF03631 Virulence factor BrkB D5400_03910 PF13302 Acetyltransferase (GNAT) domain D5400_03910 PF00027 Cyclic nucleotide-binding domain D5400_03915 PF00005 ABC transporter D5400_03915 PF08402 TOBE domain D5400_03925 PF01547 Bacterial extracellular solute-binding protein D5400_03970 PF02653 Branched-chain amino acid transport system / permease component D5400_03970 PF11862 Domain of unknown function (DUF3382) D5400_03980 PF00005 ABC transporter D5400_03980 PF12399 Branched-chain amino acid ATP-binding cassette transporter D5400_03985 PF00005 ABC transporter D5400_03990 PF00795 Carbon-nitrogen hydrolase D5400_03995 PF10431 C-terminal, D2-small domain, of ClpB protein D5400_03995 PF07724 AAA domain (Cdc48 subfamily) D5400_04015 PF04055 Radical SAM superfamily D5400_04015 PF13186 Iron-sulfur cluster-binding domain D5400_04020 PF05402 Coenzyme PQQ synthesis protein D (PqqD) D5400_04025 PF03070 TENA/THI-4/PQQC family D5400_04030 PF12706 Beta-lactamase superfamily domain D5400_04035 PF08042 PqqA family D5400_04045 PF13360 PQQ-like domain D5400_04055 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5400_04075 PF00005 ABC transporter D5400_04085 PF00756 Putative esterase D5400_04090 PF00107 Zinc-binding dehydrogenase D5400_04090 PF08240 Alcohol dehydrogenase GroES-like domain D5400_04125 PF00989 PAS fold D5400_04125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_04125 PF00512 His Kinase A (phospho-acceptor) domain D5400_04130 PF00196 Bacterial regulatory proteins, luxR family D5400_04130 PF00072 Response regulator receiver domain D5400_04135 PF02028 BCCT, betaine/carnitine/choline family transporter D5400_04140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_04140 PF03466 LysR substrate binding domain D5400_04160 PF01011 PQQ enzyme repeat D5400_04165 PF01557 Fumarylacetoacetate (FAA) hydrolase family D5400_04175 PF00557 Metallopeptidase family M24 D5400_04180 PF03466 LysR substrate binding domain D5400_04180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_04195 PF04303 PrpF protein D5400_04200 PF00180 Isocitrate/isopropylmalate dehydrogenase D5400_04205 PF00890 FAD binding domain D5400_04205 PF14537 Cytochrome c3 D5400_04215 PF04303 PrpF protein D5400_04225 PF00392 Bacterial regulatory proteins, gntR family D5400_04225 PF07729 FCD domain D5400_04235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_04235 PF03466 LysR substrate binding domain D5400_04240 PF02615 Malate/L-lactate dehydrogenase D5400_04245 PF01842 ACT domain D5400_04245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D5400_04245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D5400_04250 PF03737 Aldolase/RraA D5400_04265 PF00593 TonB dependent receptor D5400_04265 PF07715 TonB-dependent Receptor Plug Domain D5400_04275 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D5400_04275 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D5400_04280 PF13419 Haloacid dehalogenase-like hydrolase D5400_04285 PF01232 Mannitol dehydrogenase Rossmann domain D5400_04285 PF08125 Mannitol dehydrogenase C-terminal domain D5400_04295 PF00005 ABC transporter D5400_04295 PF08402 TOBE domain D5400_04300 PF00528 Binding-protein-dependent transport system inner membrane component D5400_04325 PF04198 Putative sugar-binding domain D5400_04335 PF00005 ABC transporter D5400_04340 PF00528 Binding-protein-dependent transport system inner membrane component D5400_04345 PF00528 Binding-protein-dependent transport system inner membrane component D5400_04360 PF03401 Tripartite tricarboxylate transporter family receptor D5400_04370 PF01970 Tripartite tricarboxylate transporter TctA family D5400_04375 PF00743 Flavin-binding monooxygenase-like D5400_04380 PF00107 Zinc-binding dehydrogenase D5400_04380 PF08240 Alcohol dehydrogenase GroES-like domain D5400_04385 PF00106 short chain dehydrogenase D5400_04390 PF00158 Sigma-54 interaction domain D5400_04390 PF02954 Bacterial regulatory protein, Fis family D5400_04390 PF01590 GAF domain D5400_04395 PF00732 GMC oxidoreductase D5400_04395 PF05199 GMC oxidoreductase D5400_04400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D5400_04400 PF02770 Acyl-CoA dehydrogenase, middle domain D5400_04400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D5400_04405 PF01676 Metalloenzyme superfamily D5400_04405 PF06415 BPG-independent PGAM N-terminus (iPGM_N) D5400_04415 PF00403 Heavy-metal-associated domain D5400_04425 PF00027 Cyclic nucleotide-binding domain D5400_04425 PF13545 Crp-like helix-turn-helix domain D5400_04430 PF00704 Glycosyl hydrolases family 18 D5400_04430 PF00041 Fibronectin type III domain D5400_04440 PF01522 Polysaccharide deacetylase D5400_04445 PF00196 Bacterial regulatory proteins, luxR family D5400_04445 PF00072 Response regulator receiver domain D5400_04450 PF04542 Sigma-70 region 2 D5400_04450 PF08281 Sigma-70, region 4 D5400_04470 PF02245 Methylpurine-DNA glycosylase (MPG) D5400_04510 PF02633 Creatinine amidohydrolase D5400_04525 PF00005 ABC transporter D5400_04530 PF00528 Binding-protein-dependent transport system inner membrane component D5400_04535 PF07969 Amidohydrolase family D5400_04545 PF02525 Flavodoxin-like fold D5400_04565 PF01547 Bacterial extracellular solute-binding protein D5400_04570 PF00528 Binding-protein-dependent transport system inner membrane component D5400_04575 PF00005 ABC transporter D5400_04585 PF00037 4Fe-4S binding domain D5400_04585 PF11953 Domain of unknown function (DUF3470) D5400_04590 PF02559 CarD-like/TRCF domain D5400_04595 PF00140 Sigma-70 factor, region 1.2 D5400_04595 PF04542 Sigma-70 region 2 D5400_04595 PF04545 Sigma-70, region 4 D5400_04600 PF17871 AAA lid domain D5400_04600 PF00004 ATPase family associated with various cellular activities (AAA) D5400_04600 PF07724 AAA domain (Cdc48 subfamily) D5400_04600 PF02861 Clp amino terminal domain, pathogenicity island component D5400_04600 PF10431 C-terminal, D2-small domain, of ClpB protein D5400_04610 PF00171 Aldehyde dehydrogenase family D5400_04620 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D5400_04625 PF00111 2Fe-2S iron-sulfur cluster binding domain D5400_04625 PF01799 [2Fe-2S] binding domain D5400_04630 PF04551 GcpE protein D5400_04635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_04635 PF00512 His Kinase A (phospho-acceptor) domain D5400_04635 PF00672 HAMP domain D5400_04635 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5400_04635 PF01627 Hpt domain D5400_04635 PF00072 Response regulator receiver domain D5400_04640 PF00348 Polyprenyl synthetase D5400_04645 PF00912 Transglycosylase D5400_04650 PF00043 Glutathione S-transferase, C-terminal domain D5400_04650 PF13417 Glutathione S-transferase, N-terminal domain D5400_04655 PF01783 Ribosomal L32p protein family D5400_04665 PF03928 Haem-degrading D5400_04670 PF07879 PHB/PHA accumulation regulator DNA-binding domain D5400_04670 PF05233 PHB accumulation regulatory domain D5400_04675 PF00108 Thiolase, N-terminal domain D5400_04675 PF02803 Thiolase, C-terminal domain D5400_04690 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_04700 PF01494 FAD binding domain D5400_04705 PF07690 Major Facilitator Superfamily D5400_04710 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D5400_04710 PF02436 Conserved carboxylase domain D5400_04710 PF00682 HMGL-like D5400_04710 PF02785 Biotin carboxylase C-terminal domain D5400_04710 PF00289 Biotin carboxylase, N-terminal domain D5400_04710 PF00364 Biotin-requiring enzyme D5400_04720 PF01965 DJ-1/PfpI family D5400_04760 PF00534 Glycosyl transferases group 1 D5400_04760 PF13439 Glycosyltransferase Family 4 D5400_04775 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D5400_04775 PF01872 RibD C-terminal domain D5400_04780 PF10091 Putative glucoamylase D5400_04780 PF06165 Glycosyltransferase family 36 D5400_04780 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain D5400_04790 PF02276 Photosynthetic reaction centre cytochrome C subunit D5400_04795 PF00124 Photosynthetic reaction centre protein D5400_04800 PF00124 Photosynthetic reaction centre protein D5400_04805 PF00556 Antenna complex alpha/beta subunit D5400_04810 PF00556 Antenna complex alpha/beta subunit D5400_04820 PF00148 Nitrogenase component 1 type Oxidoreductase D5400_04820 PF08369 Proto-chlorophyllide reductase 57 kD subunit D5400_04825 PF00148 Nitrogenase component 1 type Oxidoreductase D5400_04830 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family D5400_04840 PF00891 O-methyltransferase domain D5400_04840 PF16864 Dimerisation domain D5400_04845 PF00348 Polyprenyl synthetase D5400_04850 PF01593 Flavin containing amine oxidoreductase D5400_04870 PF01593 Flavin containing amine oxidoreductase D5400_04875 PF12697 Alpha/beta hydrolase family D5400_04880 PF17863 AAA lid domain D5400_04885 PF01078 Magnesium chelatase, subunit ChlI D5400_04885 PF17863 AAA lid domain D5400_04890 PF02779 Transketolase, pyrimidine binding domain D5400_04890 PF02780 Transketolase, C-terminal domain D5400_04890 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D5400_04915 PF07943 Penicillin-binding protein 5, C-terminal domain D5400_04915 PF00768 D-alanyl-D-alanine carboxypeptidase D5400_04920 PF02492 CobW/HypB/UreG, nucleotide-binding domain D5400_04920 PF07683 Cobalamin synthesis protein cobW C-terminal domain D5400_04925 PF01206 Sulfurtransferase TusA D5400_04930 PF03734 L,D-transpeptidase catalytic domain D5400_04935 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D5400_04935 PF13288 DXP reductoisomerase C-terminal domain D5400_04935 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D5400_04940 PF00155 Aminotransferase class I and II D5400_04945 PF03450 CO dehydrogenase flavoprotein C-terminal domain D5400_04945 PF00941 FAD binding domain in molybdopterin dehydrogenase D5400_04950 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D5400_04950 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D5400_04955 PF00111 2Fe-2S iron-sulfur cluster binding domain D5400_04955 PF01799 [2Fe-2S] binding domain D5400_04965 PF00072 Response regulator receiver domain D5400_04965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_04965 PF00512 His Kinase A (phospho-acceptor) domain D5400_04965 PF09308 LuxQ, periplasmic D5400_04970 PF00196 Bacterial regulatory proteins, luxR family D5400_04970 PF00072 Response regulator receiver domain D5400_04975 PF00664 ABC transporter transmembrane region D5400_04975 PF00005 ABC transporter D5400_04980 PF00293 NUDIX domain D5400_04985 PF00155 Aminotransferase class I and II D5400_04990 PF12291 Protein of unknown function (DUF3623) D5400_04995 PF02915 Rubrerythrin D5400_05015 PF03967 Photosynthetic reaction centre, H-chain N-terminal region D5400_05015 PF05239 PRC-barrel domain D5400_05020 PF03209 PUCC protein D5400_05025 PF05175 Methyltransferase small domain D5400_05025 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus D5400_05030 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family D5400_05035 PF11965 Domain of unknown function (DUF3479) D5400_05035 PF02514 CobN/Magnesium Chelatase D5400_05040 PF08369 Proto-chlorophyllide reductase 57 kD subunit D5400_05040 PF00148 Nitrogenase component 1 type Oxidoreductase D5400_05045 PF00148 Nitrogenase component 1 type Oxidoreductase D5400_05050 PF07284 2-vinyl bacteriochlorophyllide hydratase (BCHF) D5400_05060 PF02954 Bacterial regulatory protein, Fis family D5400_05060 PF13426 PAS domain D5400_05060 PF13188 PAS domain D5400_05065 PF01040 UbiA prenyltransferase family D5400_05070 PF03209 PUCC protein D5400_05085 PF03073 TspO/MBR family D5400_05100 PF00583 Acetyltransferase (GNAT) family D5400_05105 PF00202 Aminotransferase class-III D5400_05110 PF06339 Ectoine synthase D5400_05115 PF13840 ACT domain D5400_05115 PF00696 Amino acid kinase family D5400_05120 PF12631 MnmE helical domain D5400_05120 PF10396 GTP-binding protein TrmE N-terminus D5400_05120 PF01926 50S ribosome-binding GTPase D5400_05125 PF00005 ABC transporter D5400_05130 PF02653 Branched-chain amino acid transport system / permease component D5400_05135 PF13407 Periplasmic binding protein domain D5400_05145 PF00202 Aminotransferase class-III D5400_05150 PF02423 Ornithine cyclodeaminase/mu-crystallin family D5400_05155 PF00291 Pyridoxal-phosphate dependent enzyme D5400_05160 PF01321 Creatinase/Prolidase N-terminal domain D5400_05160 PF00557 Metallopeptidase family M24 D5400_05165 PF01546 Peptidase family M20/M25/M40 D5400_05165 PF07687 Peptidase dimerisation domain D5400_05180 PF00106 short chain dehydrogenase D5400_05185 PF01979 Amidohydrolase family D5400_05190 PF00156 Phosphoribosyl transferase domain D5400_05195 PF03435 Saccharopine dehydrogenase NADP binding domain D5400_05195 PF16653 Saccharopine dehydrogenase C-terminal domain D5400_05205 PF00294 pfkB family carbohydrate kinase D5400_05210 PF00342 Phosphoglucose isomerase D5400_05225 PF00501 AMP-binding enzyme D5400_05225 PF13193 AMP-binding enzyme C-terminal domain D5400_05240 PF07733 Bacterial DNA polymerase III alpha NTPase domain D5400_05240 PF14579 Helix-hairpin-helix motif D5400_05240 PF02811 PHP domain D5400_05240 PF01336 OB-fold nucleic acid binding domain D5400_05240 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D5400_05280 PF03976 Polyphosphate kinase 2 (PPK2) D5400_05285 PF00989 PAS fold D5400_05285 PF16736 Single Cache-like D5400_05285 PF00512 His Kinase A (phospho-acceptor) domain D5400_05285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_05295 PF00528 Binding-protein-dependent transport system inner membrane component D5400_05300 PF00528 Binding-protein-dependent transport system inner membrane component D5400_05305 PF00005 ABC transporter D5400_05310 PF01895 PhoU domain D5400_05315 PF00486 Transcriptional regulatory protein, C terminal D5400_05315 PF00072 Response regulator receiver domain D5400_05325 PF00202 Aminotransferase class-III D5400_05330 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D5400_05330 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D5400_05335 PF01430 Hsp33 protein D5400_05345 PF00873 AcrB/AcrD/AcrF family D5400_05350 PF02386 Cation transport protein D5400_05355 PF04379 ApaG domain D5400_05365 PF01053 Cys/Met metabolism PLP-dependent enzyme D5400_05370 PF00692 dUTPase D5400_05395 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5400_05405 PF01921 tRNA synthetases class I (K) D5400_05415 PF00717 Peptidase S24-like D5400_05415 PF01726 LexA DNA binding domain D5400_05430 PF00378 Enoyl-CoA hydratase/isomerase D5400_05430 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D5400_05430 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D5400_05435 PF00108 Thiolase, N-terminal domain D5400_05435 PF02803 Thiolase, C-terminal domain D5400_05440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D5400_05440 PF02770 Acyl-CoA dehydrogenase, middle domain D5400_05440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D5400_05445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D5400_05445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D5400_05445 PF12806 Acetyl-CoA dehydrogenase C-terminal like D5400_05445 PF02770 Acyl-CoA dehydrogenase, middle domain D5400_05450 PF09278 MerR, DNA binding D5400_05450 PF00376 MerR family regulatory protein D5400_05460 PF01925 Sulfite exporter TauE/SafE D5400_05475 PF00270 DEAD/DEAH box helicase D5400_05475 PF08494 DEAD/H associated D5400_05475 PF00271 Helicase conserved C-terminal domain D5400_05480 PF08241 Methyltransferase domain D5400_05495 PF04679 ATP dependent DNA ligase C terminal region D5400_05495 PF04675 DNA ligase N terminus D5400_05495 PF01068 ATP dependent DNA ligase domain D5400_05515 PF00850 Histone deacetylase domain D5400_05520 PF01554 MatE D5400_05525 PF01180 Dihydroorotate dehydrogenase D5400_05540 PF07859 alpha/beta hydrolase fold D5400_05550 PF00196 Bacterial regulatory proteins, luxR family D5400_05550 PF00072 Response regulator receiver domain D5400_05555 PF00072 Response regulator receiver domain D5400_05555 PF01627 Hpt domain D5400_05555 PF00512 His Kinase A (phospho-acceptor) domain D5400_05555 PF00672 HAMP domain D5400_05555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_05560 PF01741 Large-conductance mechanosensitive channel, MscL D5400_05565 PF00155 Aminotransferase class I and II D5400_05580 PF00581 Rhodanese-like domain D5400_05585 PF04143 Sulphur transport D5400_05600 PF00669 Bacterial flagellin N-terminal helical region D5400_05600 PF00700 Bacterial flagellin C-terminal helical region D5400_05620 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D5400_05635 PF06793 Uncharacterised protein family (UPF0262) D5400_05645 PF01176 Translation initiation factor 1A / IF-1 D5400_05650 PF02545 Maf-like protein D5400_05655 PF03884 DNA gyrase inhibitor YacG D5400_05665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D5400_05670 PF01037 Lrp/AsnC ligand binding domain D5400_05685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5400_05700 PF01627 Hpt domain D5400_05700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_05700 PF02895 Signal transducing histidine kinase, homodimeric domain D5400_05700 PF01584 CheW-like domain D5400_05705 PF01584 CheW-like domain D5400_05710 PF01739 CheR methyltransferase, SAM binding domain D5400_05710 PF03705 CheR methyltransferase, all-alpha domain D5400_05715 PF01339 CheB methylesterase D5400_05715 PF00072 Response regulator receiver domain D5400_05720 PF00072 Response regulator receiver domain D5400_05725 PF03975 CheD chemotactic sensory transduction D5400_05735 PF01514 Secretory protein of YscJ/FliF family D5400_05735 PF08345 Flagellar M-ring protein C-terminal D5400_05745 PF00196 Bacterial regulatory proteins, luxR family D5400_05745 PF03472 Autoinducer binding domain D5400_05760 PF01312 FlhB HrpN YscU SpaS Family D5400_05765 PF01706 FliG C-terminal domain D5400_05765 PF14841 FliG middle domain D5400_05765 PF14842 FliG N-terminal domain D5400_05770 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D5400_05775 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D5400_05780 PF01618 MotA/TolQ/ExbB proton channel family D5400_05790 PF00460 Flagella basal body rod protein D5400_05790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D5400_05795 PF18269 T3SS EscN ATPase C-terminal domain D5400_05795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5400_05805 PF00460 Flagella basal body rod protein D5400_05810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D5400_05810 PF00460 Flagella basal body rod protein D5400_05815 PF02049 Flagellar hook-basal body complex protein FliE D5400_05820 PF00460 Flagella basal body rod protein D5400_05820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D5400_05825 PF13144 Chaperone for flagella basal body P-ring formation D5400_05830 PF02119 Flagellar P-ring protein D5400_05840 PF02107 Flagellar L-ring protein D5400_05850 PF00813 FliP family D5400_05855 PF00669 Bacterial flagellin N-terminal helical region D5400_05855 PF00700 Bacterial flagellin C-terminal helical region D5400_05860 PF00669 Bacterial flagellin N-terminal helical region D5400_05860 PF00700 Bacterial flagellin C-terminal helical region D5400_05870 PF03102 NeuB family D5400_05870 PF08666 SAF domain D5400_05885 PF02348 Cytidylyltransferase D5400_05890 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D5400_05895 PF02719 Polysaccharide biosynthesis protein D5400_05905 PF13677 Membrane MotB of proton-channel complex MotA/MotB D5400_05905 PF00691 OmpA family D5400_05925 PF00486 Transcriptional regulatory protein, C terminal D5400_05930 PF00460 Flagella basal body rod protein D5400_05930 PF07559 Flagellar basal body protein FlaE D5400_05930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D5400_05950 PF07378 Flagellar protein FlbT D5400_05955 PF03963 Flagellar hook capping protein - N-terminal region D5400_05960 PF01313 Bacterial export proteins, family 3 D5400_05965 PF00771 FHIPEP family D5400_05970 PF01311 Bacterial export proteins, family 1 D5400_05995 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D5400_05995 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D5400_06000 PF00356 Bacterial regulatory proteins, lacI family D5400_06010 PF01547 Bacterial extracellular solute-binding protein D5400_06015 PF00528 Binding-protein-dependent transport system inner membrane component D5400_06020 PF00528 Binding-protein-dependent transport system inner membrane component D5400_06025 PF00128 Alpha amylase, catalytic domain D5400_06030 PF00005 ABC transporter D5400_06030 PF03459 TOBE domain D5400_06030 PF17912 MalK OB fold domain D5400_06035 PF00920 Dehydratase family D5400_06040 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D5400_06045 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D5400_06045 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D5400_06050 PF01266 FAD dependent oxidoreductase D5400_06055 PF00120 Glutamine synthetase, catalytic domain D5400_06070 PF00672 HAMP domain D5400_06070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5400_06075 PF01569 PAP2 superfamily D5400_06095 PF00463 Isocitrate lyase family D5400_06100 PF09856 Predicted transcriptional regulator (DUF2083) D5400_06100 PF06114 IrrE N-terminal-like domain D5400_06100 PF01381 Helix-turn-helix D5400_06105 PF13416 Bacterial extracellular solute-binding protein D5400_06110 PF08402 TOBE domain D5400_06110 PF00005 ABC transporter D5400_06115 PF00528 Binding-protein-dependent transport system inner membrane component D5400_06120 PF00528 Binding-protein-dependent transport system inner membrane component D5400_06130 PF00501 AMP-binding enzyme D5400_06130 PF13193 AMP-binding enzyme C-terminal domain D5400_06135 PF13188 PAS domain D5400_06135 PF00989 PAS fold D5400_06135 PF00512 His Kinase A (phospho-acceptor) domain D5400_06135 PF13426 PAS domain D5400_06135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_06165 PF00459 Inositol monophosphatase family D5400_06170 PF03102 NeuB family D5400_06170 PF08666 SAF domain D5400_06205 PF16363 GDP-mannose 4,6 dehydratase D5400_06210 PF16363 GDP-mannose 4,6 dehydratase D5400_06215 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D5400_06220 PF00483 Nucleotidyl transferase D5400_06225 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D5400_06225 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D5400_06225 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D5400_06235 PF17862 AAA+ lid domain D5400_06235 PF01434 Peptidase family M41 D5400_06235 PF00004 ATPase family associated with various cellular activities (AAA) D5400_06250 PF00361 Proton-conducting membrane transporter D5400_06250 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D5400_06250 PF13244 Domain of unknown function (DUF4040) D5400_06280 PF03334 Na+/H+ antiporter subunit D5400_06285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_06285 PF00512 His Kinase A (phospho-acceptor) domain D5400_06290 PF00072 Response regulator receiver domain D5400_06290 PF02954 Bacterial regulatory protein, Fis family D5400_06290 PF00158 Sigma-54 interaction domain D5400_06295 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D5400_06295 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D5400_06295 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D5400_06295 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D5400_06300 PF01050 Mannose-6-phosphate isomerase D5400_06300 PF00483 Nucleotidyl transferase D5400_06305 PF00005 ABC transporter D5400_06305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D5400_06310 PF00528 Binding-protein-dependent transport system inner membrane component D5400_06310 PF12911 N-terminal TM domain of oligopeptide transport permease C D5400_06315 PF00528 Binding-protein-dependent transport system inner membrane component D5400_06320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D5400_06330 PF00474 Sodium:solute symporter family D5400_06345 PF02254 TrkA-N domain D5400_06345 PF00999 Sodium/hydrogen exchanger family D5400_06350 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D5400_06350 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D5400_06360 PF03853 YjeF-related protein N-terminus D5400_06360 PF01256 Carbohydrate kinase D5400_06375 PF00128 Alpha amylase, catalytic domain D5400_06390 PF00916 Sulfate permease family D5400_06390 PF01740 STAS domain D5400_06400 PF04143 Sulphur transport D5400_06410 PF00753 Metallo-beta-lactamase superfamily D5400_06410 PF04273 Putative phosphatase (DUF442) D5400_06420 PF00005 ABC transporter D5400_06425 PF00005 ABC transporter D5400_06425 PF12399 Branched-chain amino acid ATP-binding cassette transporter D5400_06435 PF02653 Branched-chain amino acid transport system / permease component D5400_06445 PF00501 AMP-binding enzyme D5400_06445 PF13193 AMP-binding enzyme C-terminal domain D5400_06485 PF01202 Shikimate kinase D5400_06490 PF00378 Enoyl-CoA hydratase/isomerase D5400_06495 PF00378 Enoyl-CoA hydratase/isomerase D5400_06495 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D5400_06495 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D5400_06510 PF00043 Glutathione S-transferase, C-terminal domain D5400_06510 PF02798 Glutathione S-transferase, N-terminal domain D5400_06515 PF07883 Cupin domain D5400_06520 PF00501 AMP-binding enzyme D5400_06520 PF13193 AMP-binding enzyme C-terminal domain D5400_06525 PF01494 FAD binding domain D5400_06540 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) D5400_06550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_06550 PF03466 LysR substrate binding domain D5400_06555 PF01322 Cytochrome C' D5400_06560 PF00196 Bacterial regulatory proteins, luxR family D5400_06560 PF00072 Response regulator receiver domain D5400_06565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_06565 PF07730 Histidine kinase D5400_06575 PF00664 ABC transporter transmembrane region D5400_06575 PF00005 ABC transporter D5400_06585 PF00529 HlyD membrane-fusion protein of T1SS D5400_06585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D5400_06600 PF00482 Type II secretion system (T2SS), protein F D5400_06605 PF08334 Type II secretion system (T2SS), protein G D5400_06605 PF07963 Prokaryotic N-terminal methylation motif D5400_06645 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D5400_06645 PF00437 Type II/IV secretion system protein D5400_06650 PF03958 Bacterial type II/III secretion system short domain D5400_06650 PF00263 Bacterial type II and III secretion system protein D5400_06660 PF07730 Histidine kinase D5400_06660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_06660 PF05384 Sensor protein DegS D5400_06665 PF00072 Response regulator receiver domain D5400_06665 PF00196 Bacterial regulatory proteins, luxR family D5400_06675 PF00149 Calcineurin-like phosphoesterase D5400_06680 PF13514 AAA domain D5400_06685 PF13581 Histidine kinase-like ATPase domain D5400_06685 PF07568 Histidine kinase D5400_06685 PF13426 PAS domain D5400_06705 PF00175 Oxidoreductase NAD-binding domain D5400_06705 PF00970 Oxidoreductase FAD-binding domain D5400_06705 PF00042 Globin D5400_06715 PF00115 Cytochrome C and Quinol oxidase polypeptide I D5400_06740 PF00199 Catalase D5400_06740 PF06628 Catalase-related immune-responsive D5400_06740 PF18011 C-terminal domain found in long catalases D5400_06745 PF00440 Bacterial regulatory proteins, tetR family D5400_06750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D5400_06755 PF00873 AcrB/AcrD/AcrF family D5400_06760 PF00210 Ferritin-like domain D5400_06765 PF03480 Bacterial extracellular solute-binding protein, family 7 D5400_06775 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_06785 PF00392 Bacterial regulatory proteins, gntR family D5400_06785 PF07729 FCD domain D5400_06795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_06795 PF03466 LysR substrate binding domain D5400_06805 PF01037 Lrp/AsnC ligand binding domain D5400_06815 PF01381 Helix-turn-helix D5400_06815 PF09856 Predicted transcriptional regulator (DUF2083) D5400_06815 PF06114 IrrE N-terminal-like domain D5400_06820 PF00155 Aminotransferase class I and II D5400_06825 PF00107 Zinc-binding dehydrogenase D5400_06825 PF08240 Alcohol dehydrogenase GroES-like domain D5400_06830 PF13454 FAD-NAD(P)-binding D5400_06850 PF13416 Bacterial extracellular solute-binding protein D5400_06855 PF00528 Binding-protein-dependent transport system inner membrane component D5400_06860 PF00528 Binding-protein-dependent transport system inner membrane component D5400_06865 PF08402 TOBE domain D5400_06865 PF00005 ABC transporter D5400_06870 PF00270 DEAD/DEAH box helicase D5400_06870 PF00271 Helicase conserved C-terminal domain D5400_06875 PF04143 Sulphur transport D5400_06895 PF10518 TAT (twin-arginine translocation) pathway signal sequence D5400_06895 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding D5400_06895 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5400_06915 PF00528 Binding-protein-dependent transport system inner membrane component D5400_06920 PF00528 Binding-protein-dependent transport system inner membrane component D5400_06925 PF08402 TOBE domain D5400_06925 PF00005 ABC transporter D5400_06935 PF00171 Aldehyde dehydrogenase family D5400_06940 PF00491 Arginase family D5400_06955 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment D5400_06965 PF17763 Glutaminase/Asparaginase C-terminal domain D5400_06965 PF00710 Asparaginase, N-terminal D5400_06970 PF00528 Binding-protein-dependent transport system inner membrane component D5400_06975 PF00005 ABC transporter D5400_06985 PF00392 Bacterial regulatory proteins, gntR family D5400_06995 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D5400_07000 PF01488 Shikimate / quinate 5-dehydrogenase D5400_07000 PF08501 Shikimate dehydrogenase substrate binding domain D5400_07000 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D5400_07005 PF00392 Bacterial regulatory proteins, gntR family D5400_07005 PF07729 FCD domain D5400_07010 PF07729 FCD domain D5400_07010 PF00392 Bacterial regulatory proteins, gntR family D5400_07015 PF03480 Bacterial extracellular solute-binding protein, family 7 D5400_07025 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_07030 PF01220 Dehydroquinase class II D5400_07035 PF00171 Aldehyde dehydrogenase family D5400_07040 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D5400_07045 PF00920 Dehydratase family D5400_07050 PF02653 Branched-chain amino acid transport system / permease component D5400_07055 PF00005 ABC transporter D5400_07060 PF13407 Periplasmic binding protein domain D5400_07065 PF08450 SMP-30/Gluconolactonase/LRE-like region D5400_07070 PF02653 Branched-chain amino acid transport system / permease component D5400_07075 PF02653 Branched-chain amino acid transport system / permease component D5400_07080 PF00005 ABC transporter D5400_07085 PF13407 Periplasmic binding protein domain D5400_07095 PF01263 Aldose 1-epimerase D5400_07100 PF03466 LysR substrate binding domain D5400_07100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_07110 PF00392 Bacterial regulatory proteins, gntR family D5400_07110 PF07702 UTRA domain D5400_07115 PF06754 Phosphonate metabolism protein PhnG D5400_07120 PF05845 Bacterial phosphonate metabolism protein (PhnH) D5400_07125 PF05861 Bacterial phosphonate metabolism protein (PhnI) D5400_07130 PF06007 Phosphonate metabolism protein PhnJ D5400_07135 PF00005 ABC transporter D5400_07140 PF00005 ABC transporter D5400_07145 PF00132 Bacterial transferase hexapeptide (six repeats) D5400_07155 PF00005 ABC transporter D5400_07160 PF00528 Binding-protein-dependent transport system inner membrane component D5400_07165 PF00528 Binding-protein-dependent transport system inner membrane component D5400_07175 PF09992 Phosphodiester glycosidase D5400_07190 PF03193 RsgA GTPase D5400_07195 PF00990 Diguanylate cyclase, GGDEF domain D5400_07205 PF12848 ABC transporter D5400_07205 PF00005 ABC transporter D5400_07225 PF01258 Prokaryotic dksA/traR C4-type zinc finger D5400_07260 PF13188 PAS domain D5400_07260 PF00990 Diguanylate cyclase, GGDEF domain D5400_07260 PF00563 EAL domain D5400_07260 PF03707 Bacterial signalling protein N terminal repeat D5400_07270 PF01979 Amidohydrolase family D5400_07285 PF00005 ABC transporter D5400_07300 PF07969 Amidohydrolase family D5400_07305 PF00440 Bacterial regulatory proteins, tetR family D5400_07310 PF00248 Aldo/keto reductase family D5400_07315 PF01699 Sodium/calcium exchanger protein D5400_07325 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D5400_07325 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D5400_07340 PF00210 Ferritin-like domain D5400_07345 PF00455 DeoR C terminal sensor domain D5400_07345 PF08220 DeoR-like helix-turn-helix domain D5400_07350 PF16901 C-terminal domain of alpha-glycerophosphate oxidase D5400_07350 PF01266 FAD dependent oxidoreductase D5400_07360 PF17912 MalK OB fold domain D5400_07360 PF00005 ABC transporter D5400_07365 PF00528 Binding-protein-dependent transport system inner membrane component D5400_07370 PF00528 Binding-protein-dependent transport system inner membrane component D5400_07385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D5400_07385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D5400_07395 PF00563 EAL domain D5400_07395 PF03707 Bacterial signalling protein N terminal repeat D5400_07395 PF00990 Diguanylate cyclase, GGDEF domain D5400_07395 PF13188 PAS domain D5400_07405 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D5400_07405 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D5400_07405 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D5400_07405 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D5400_07410 PF02082 Transcriptional regulator D5400_07415 PF01022 Bacterial regulatory protein, arsR family D5400_07425 PF00265 Thymidine kinase D5400_07430 PF00034 Cytochrome c D5400_07440 PF01037 Lrp/AsnC ligand binding domain D5400_07445 PF00171 Aldehyde dehydrogenase family D5400_07445 PF14850 DNA-binding domain of Proline dehydrogenase D5400_07445 PF18327 Proline utilization A proline dehydrogenase N-terminal domain D5400_07445 PF01619 Proline dehydrogenase D5400_07450 PF01268 Formate--tetrahydrofolate ligase D5400_07465 PF04715 Anthranilate synthase component I, N terminal region D5400_07465 PF00425 chorismate binding enzyme D5400_07465 PF00117 Glutamine amidotransferase class-I D5400_07470 PF16916 Dimerisation domain of Zinc Transporter D5400_07470 PF01545 Cation efflux family D5400_07475 PF08028 Acyl-CoA dehydrogenase, C-terminal domain D5400_07475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D5400_07475 PF02770 Acyl-CoA dehydrogenase, middle domain D5400_07480 PF01638 HxlR-like helix-turn-helix D5400_07490 PF09819 ABC-type cobalt transport system, permease component D5400_07495 PF00005 ABC transporter D5400_07505 PF00005 ABC transporter D5400_07505 PF13732 Domain of unknown function (DUF4162) D5400_07510 PF01061 ABC-2 type transporter D5400_07535 PF08502 LeuA allosteric (dimerisation) domain D5400_07535 PF00682 HMGL-like D5400_07540 PF00561 alpha/beta hydrolase fold D5400_07540 PF00364 Biotin-requiring enzyme D5400_07555 PF13344 Haloacid dehalogenase-like hydrolase D5400_07555 PF00293 NUDIX domain D5400_07560 PF13409 Glutathione S-transferase, N-terminal domain D5400_07585 PF07726 ATPase family associated with various cellular activities (AAA) D5400_07585 PF17863 AAA lid domain D5400_07595 PF00293 NUDIX domain D5400_07600 PF01743 Poly A polymerase head domain D5400_07600 PF12627 Probable RNA and SrmB- binding site of polymerase A D5400_07600 PF13735 tRNA nucleotidyltransferase domain 2 putative D5400_07610 PF01218 Coproporphyrinogen III oxidase D5400_07620 PF00588 SpoU rRNA Methylase family D5400_07625 PF00664 ABC transporter transmembrane region D5400_07625 PF00005 ABC transporter D5400_07630 PF00664 ABC transporter transmembrane region D5400_07630 PF00005 ABC transporter D5400_07635 PF00355 Rieske [2Fe-2S] domain D5400_07635 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal D5400_07640 PF00033 Cytochrome b/b6/petB D5400_07640 PF00032 Cytochrome b(C-terminal)/b6/petD D5400_07645 PF02167 Cytochrome C1 family D5400_07645 PF00032 Cytochrome b(C-terminal)/b6/petD D5400_07645 PF00033 Cytochrome b/b6/petB D5400_07650 PF00156 Phosphoribosyl transferase domain D5400_07665 PF01926 50S ribosome-binding GTPase D5400_07665 PF06071 Protein of unknown function (DUF933) D5400_07670 PF01195 Peptidyl-tRNA hydrolase D5400_07675 PF14693 Ribosomal protein TL5, C-terminal domain D5400_07675 PF01386 Ribosomal L25p family D5400_07680 PF02417 Chromate transporter D5400_07685 PF00920 Dehydratase family D5400_07690 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D5400_07690 PF14572 Phosphoribosyl synthetase-associated domain D5400_07715 PF01790 Prolipoprotein diacylglyceryl transferase D5400_07730 PF14748 Pyrroline-5-carboxylate reductase dimerisation D5400_07730 PF03807 NADP oxidoreductase coenzyme F420-dependent D5400_07735 PF01588 Putative tRNA binding domain D5400_07740 PF00990 Diguanylate cyclase, GGDEF domain D5400_07745 PF00512 His Kinase A (phospho-acceptor) domain D5400_07745 PF16527 Two-component sensor protein CpxA, periplasmic domain D5400_07745 PF00672 HAMP domain D5400_07745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_07750 PF00072 Response regulator receiver domain D5400_07750 PF00486 Transcriptional regulatory protein, C terminal D5400_07755 PF12802 MarR family D5400_07760 PF01063 Amino-transferase class IV D5400_07770 PF00753 Metallo-beta-lactamase superfamily D5400_07800 PF00563 EAL domain D5400_07800 PF10388 EAL-domain associated signalling protein domain D5400_07810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_07810 PF03466 LysR substrate binding domain D5400_07815 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5400_07820 PF01037 Lrp/AsnC ligand binding domain D5400_07825 PF01272 Transcription elongation factor, GreA/GreB, C-term D5400_07825 PF03449 Transcription elongation factor, N-terminal D5400_07830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D5400_07830 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D5400_07830 PF02142 MGS-like domain D5400_07840 PF04228 Putative neutral zinc metallopeptidase D5400_07850 PF00117 Glutamine amidotransferase class-I D5400_07850 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D5400_07870 PF04539 Sigma-70 region 3 D5400_07870 PF04545 Sigma-70, region 4 D5400_07870 PF04546 Sigma-70, non-essential region D5400_07870 PF03979 Sigma-70 factor, region 1.1 D5400_07870 PF04542 Sigma-70 region 2 D5400_07870 PF00140 Sigma-70 factor, region 1.2 D5400_07875 PF00440 Bacterial regulatory proteins, tetR family D5400_07885 PF00990 Diguanylate cyclase, GGDEF domain D5400_07890 PF01894 Uncharacterised protein family UPF0047 D5400_07910 PF04402 Protein of unknown function (DUF541) D5400_07925 PF06719 AraC-type transcriptional regulator N-terminus D5400_07925 PF12833 Helix-turn-helix domain D5400_07930 PF00398 Ribosomal RNA adenine dimethylase D5400_07935 PF00106 short chain dehydrogenase D5400_07945 PF00072 Response regulator receiver domain D5400_07950 PF00672 HAMP domain D5400_07950 PF17149 Periplasmic sensor domain found in signal transduction proteins D5400_07950 PF01627 Hpt domain D5400_07950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_07950 PF00072 Response regulator receiver domain D5400_07950 PF00512 His Kinase A (phospho-acceptor) domain D5400_07965 PF04199 Putative cyclase D5400_07970 PF00106 short chain dehydrogenase D5400_07980 PF13193 AMP-binding enzyme C-terminal domain D5400_07980 PF00501 AMP-binding enzyme D5400_07985 PF00866 Ring hydroxylating beta subunit D5400_07990 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D5400_07990 PF00355 Rieske [2Fe-2S] domain D5400_08010 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_08025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D5400_08025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D5400_08040 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_08055 PF10518 TAT (twin-arginine translocation) pathway signal sequence D5400_08055 PF01799 [2Fe-2S] binding domain D5400_08055 PF00111 2Fe-2S iron-sulfur cluster binding domain D5400_08060 PF03450 CO dehydrogenase flavoprotein C-terminal domain D5400_08060 PF00941 FAD binding domain in molybdopterin dehydrogenase D5400_08065 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D5400_08065 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D5400_08075 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_08085 PF03480 Bacterial extracellular solute-binding protein, family 7 D5400_08100 PF02597 ThiS family D5400_08110 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D5400_08115 PF00528 Binding-protein-dependent transport system inner membrane component D5400_08120 PF00005 ABC transporter D5400_08125 PF00528 Binding-protein-dependent transport system inner membrane component D5400_08130 PF02696 Uncharacterized ACR, YdiU/UPF0061 family D5400_08135 PF06299 Protein of unknown function (DUF1045) D5400_08140 PF07969 Amidohydrolase family D5400_08150 PF00005 ABC transporter D5400_08150 PF00571 CBS domain D5400_08155 PF00528 Binding-protein-dependent transport system inner membrane component D5400_08160 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D5400_08165 PF00440 Bacterial regulatory proteins, tetR family D5400_08165 PF13977 BetI-type transcriptional repressor, C-terminal D5400_08170 PF00884 Sulfatase D5400_08170 PF12411 Choline sulfatase enzyme C terminal D5400_08175 PF00171 Aldehyde dehydrogenase family D5400_08180 PF05199 GMC oxidoreductase D5400_08180 PF00732 GMC oxidoreductase D5400_08185 PF05025 RbsD / FucU transport protein family D5400_08195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D5400_08195 PF00205 Thiamine pyrophosphate enzyme, central domain D5400_08195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D5400_08200 PF12146 Serine aminopeptidase, S33 D5400_08210 PF00005 ABC transporter D5400_08210 PF12848 ABC transporter D5400_08220 PF13847 Methyltransferase domain D5400_08220 PF03551 Transcriptional regulator PadR-like family D5400_08225 PF02219 Methylenetetrahydrofolate reductase D5400_08235 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D5400_08235 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D5400_08250 PF01183 Glycosyl hydrolases family 25 D5400_08265 PF08447 PAS fold D5400_08265 PF08448 PAS fold D5400_08265 PF00990 Diguanylate cyclase, GGDEF domain D5400_08265 PF00563 EAL domain D5400_08270 PF01968 Hydantoinase/oxoprolinase D5400_08270 PF05378 Hydantoinase/oxoprolinase N-terminal region D5400_08280 PF00226 DnaJ domain D5400_08280 PF05099 Tellurite resistance protein TerB D5400_08285 PF01510 N-acetylmuramoyl-L-alanine amidase D5400_08300 PF02381 MraZ protein, putative antitoxin-like D5400_08305 PF01795 MraW methylase family D5400_08315 PF03717 Penicillin-binding Protein dimerisation domain D5400_08315 PF00905 Penicillin binding protein transpeptidase domain D5400_08320 PF02875 Mur ligase family, glutamate ligase domain D5400_08320 PF08245 Mur ligase middle domain D5400_08320 PF01225 Mur ligase family, catalytic domain D5400_08325 PF01225 Mur ligase family, catalytic domain D5400_08325 PF08245 Mur ligase middle domain D5400_08325 PF02875 Mur ligase family, glutamate ligase domain D5400_08330 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D5400_08330 PF00953 Glycosyl transferase family 4 D5400_08335 PF02875 Mur ligase family, glutamate ligase domain D5400_08335 PF08245 Mur ligase middle domain D5400_08340 PF01098 Cell cycle protein D5400_08345 PF03033 Glycosyltransferase family 28 N-terminal domain D5400_08345 PF04101 Glycosyltransferase family 28 C-terminal domain D5400_08350 PF02875 Mur ligase family, glutamate ligase domain D5400_08350 PF01225 Mur ligase family, catalytic domain D5400_08350 PF08245 Mur ligase middle domain D5400_08355 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D5400_08355 PF01565 FAD binding domain D5400_08360 PF01820 D-ala D-ala ligase N-terminus D5400_08360 PF07478 D-ala D-ala ligase C-terminus D5400_08365 PF08478 POTRA domain, FtsQ-type D5400_08365 PF03799 Cell division protein FtsQ D5400_08370 PF02491 SHS2 domain inserted in FTSA D5400_08375 PF12327 FtsZ family, C-terminal domain D5400_08375 PF00091 Tubulin/FtsZ family, GTPase domain D5400_08380 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D5400_08385 PF13525 Outer membrane lipoprotein D5400_08390 PF02463 RecF/RecN/SMC N terminal domain D5400_08395 PF01653 NAD-dependent DNA ligase adenylation domain D5400_08395 PF00533 BRCA1 C Terminus (BRCT) domain D5400_08395 PF12826 Helix-hairpin-helix motif D5400_08395 PF03120 NAD-dependent DNA ligase OB-fold domain D5400_08410 PF01321 Creatinase/Prolidase N-terminal domain D5400_08410 PF00557 Metallopeptidase family M24 D5400_08420 PF02630 SCO1/SenC D5400_08425 PF00132 Bacterial transferase hexapeptide (six repeats) D5400_08430 PF00171 Aldehyde dehydrogenase family D5400_08440 PF00034 Cytochrome c D5400_08445 PF07995 Glucose / Sorbosone dehydrogenase D5400_08450 PF05443 ROS/MUCR transcriptional regulator protein D5400_08460 PF00580 UvrD/REP helicase N-terminal domain D5400_08460 PF13361 UvrD-like helicase C-terminal domain D5400_08475 PF00082 Subtilase family D5400_08480 PF01738 Dienelactone hydrolase family D5400_08490 PF02308 MgtC family D5400_08500 PF02735 Ku70/Ku80 beta-barrel domain D5400_08505 PF01068 ATP dependent DNA ligase domain D5400_08505 PF04679 ATP dependent DNA ligase C terminal region D5400_08505 PF13298 DNA polymerase Ligase (LigD) D5400_08515 PF00873 AcrB/AcrD/AcrF family D5400_08520 PF00654 Voltage gated chloride channel D5400_08530 PF02913 FAD linked oxidases, C-terminal domain D5400_08530 PF01565 FAD binding domain D5400_08570 PF00303 Thymidylate synthase D5400_08575 PF00186 Dihydrofolate reductase D5400_08580 PF01145 SPFH domain / Band 7 family D5400_08585 PF01145 SPFH domain / Band 7 family D5400_08595 PF13180 PDZ domain D5400_08600 PF13302 Acetyltransferase (GNAT) domain D5400_08615 PF00990 Diguanylate cyclase, GGDEF domain D5400_08615 PF00072 Response regulator receiver domain D5400_08625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D5400_08625 PF00205 Thiamine pyrophosphate enzyme, central domain D5400_08625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D5400_08630 PF01842 ACT domain D5400_08630 PF10369 Small subunit of acetolactate synthase D5400_08635 PF01810 LysE type translocator D5400_08640 PF07704 Rv0623-like transcription factor D5400_08645 PF01850 PIN domain D5400_08650 PF13538 UvrD-like helicase C-terminal domain D5400_08650 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain D5400_08650 PF14490 Helix-hairpin-helix containing domain D5400_08655 PF00487 Fatty acid desaturase D5400_08660 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ D5400_08665 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D5400_08670 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D5400_08675 PF00294 pfkB family carbohydrate kinase D5400_08675 PF01467 Cytidylyltransferase-like D5400_08685 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D5400_08685 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D5400_08690 PF01047 MarR family D5400_08695 PF02566 OsmC-like protein D5400_08700 PF00753 Metallo-beta-lactamase superfamily D5400_08700 PF16123 Hydroxyacylglutathione hydrolase C-terminus D5400_08705 PF00939 Sodium:sulfate symporter transmembrane region D5400_08725 PF07886 BA14K-like protein D5400_08735 PF02567 Phenazine biosynthesis-like protein D5400_08765 PF16868 NMT1-like family D5400_08775 PF00582 Universal stress protein family D5400_08800 PF04239 Protein of unknown function (DUF421) D5400_08805 PF10011 Predicted membrane protein (DUF2254) D5400_08810 PF00916 Sulfate permease family D5400_08810 PF01740 STAS domain D5400_08815 PF03033 Glycosyltransferase family 28 N-terminal domain D5400_08815 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase D5400_08840 PF03783 Curli production assembly/transport component CsgG D5400_08875 PF02515 CoA-transferase family III D5400_08880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D5400_08880 PF02770 Acyl-CoA dehydrogenase, middle domain D5400_08880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D5400_08885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_08885 PF03466 LysR substrate binding domain D5400_08905 PF13439 Glycosyltransferase Family 4 D5400_08905 PF00534 Glycosyl transferases group 1 D5400_08910 PF00534 Glycosyl transferases group 1 D5400_08910 PF13439 Glycosyltransferase Family 4 D5400_08920 PF13580 SIS domain D5400_08930 PF01266 FAD dependent oxidoreductase D5400_08935 PF00248 Aldo/keto reductase family D5400_08965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D5400_08965 PF02770 Acyl-CoA dehydrogenase, middle domain D5400_08965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D5400_08980 PF01039 Carboxyl transferase domain D5400_08985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D5400_08985 PF02785 Biotin carboxylase C-terminal domain D5400_08985 PF00289 Biotin carboxylase, N-terminal domain D5400_08985 PF00364 Biotin-requiring enzyme D5400_09000 PF08669 Glycine cleavage T-protein C-terminal barrel domain D5400_09000 PF16350 FAD dependent oxidoreductase central domain D5400_09000 PF01266 FAD dependent oxidoreductase D5400_09000 PF01571 Aminomethyltransferase folate-binding domain D5400_09015 PF02355 Protein export membrane protein D5400_09015 PF07549 SecD/SecF GG Motif D5400_09020 PF01965 DJ-1/PfpI family D5400_09020 PF12833 Helix-turn-helix domain D5400_09030 PF03466 LysR substrate binding domain D5400_09030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_09035 PF00970 Oxidoreductase FAD-binding domain D5400_09035 PF00175 Oxidoreductase NAD-binding domain D5400_09035 PF00111 2Fe-2S iron-sulfur cluster binding domain D5400_09045 PF02607 B12 binding domain D5400_09045 PF02965 Vitamin B12 dependent methionine synthase, activation domain D5400_09045 PF00809 Pterin binding enzyme D5400_09045 PF02574 Homocysteine S-methyltransferase D5400_09045 PF02310 B12 binding domain D5400_09050 PF02219 Methylenetetrahydrofolate reductase D5400_09070 PF02607 B12 binding domain D5400_09070 PF02310 B12 binding domain D5400_09075 PF06253 Trimethylamine methyltransferase (MTTB) D5400_09080 PF02574 Homocysteine S-methyltransferase D5400_09080 PF02965 Vitamin B12 dependent methionine synthase, activation domain D5400_09080 PF00809 Pterin binding enzyme D5400_09080 PF02607 B12 binding domain D5400_09080 PF02310 B12 binding domain D5400_09090 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D5400_09090 PF10531 SLBB domain D5400_09090 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D5400_09100 PF00384 Molybdopterin oxidoreductase D5400_09100 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D5400_09100 PF12838 4Fe-4S dicluster domain D5400_09100 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D5400_09100 PF01568 Molydopterin dinucleotide binding domain D5400_09105 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D5400_09105 PF07685 CobB/CobQ-like glutamine amidotransferase domain D5400_09110 PF04955 HupE / UreJ protein D5400_09115 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase D5400_09120 PF07683 Cobalamin synthesis protein cobW C-terminal domain D5400_09120 PF02492 CobW/HypB/UreG, nucleotide-binding domain D5400_09125 PF02514 CobN/Magnesium Chelatase D5400_09135 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP D5400_09140 PF07995 Glucose / Sorbosone dehydrogenase D5400_09145 PF01925 Sulfite exporter TauE/SafE D5400_09155 PF01903 CbiX D5400_09160 PF02570 Precorrin-8X methylmutase D5400_09165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D5400_09170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D5400_09175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D5400_09180 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D5400_09185 PF02571 Precorrin-6x reductase CbiJ/CobK D5400_09190 PF01888 CbiD D5400_09195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D5400_09200 PF07685 CobB/CobQ-like glutamine amidotransferase domain D5400_09200 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D5400_09205 PF00155 Aminotransferase class I and II D5400_09210 PF03186 CobD/Cbib protein D5400_09220 PF00107 Zinc-binding dehydrogenase D5400_09220 PF08240 Alcohol dehydrogenase GroES-like domain D5400_09225 PF02801 Beta-ketoacyl synthase, C-terminal domain D5400_09225 PF00109 Beta-ketoacyl synthase, N-terminal domain D5400_09230 PF02801 Beta-ketoacyl synthase, C-terminal domain D5400_09230 PF00109 Beta-ketoacyl synthase, N-terminal domain D5400_09235 PF07977 FabA-like domain D5400_09240 PF00550 Phosphopantetheine attachment site D5400_09245 PF01979 Amidohydrolase family D5400_09245 PF13382 Adenine deaminase C-terminal domain D5400_09250 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D5400_09250 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D5400_09265 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system D5400_09270 PF01180 Dihydroorotate dehydrogenase D5400_09285 PF00440 Bacterial regulatory proteins, tetR family D5400_09285 PF08362 YcdC-like protein, C-terminal region D5400_09290 PF00202 Aminotransferase class-III D5400_09295 PF07687 Peptidase dimerisation domain D5400_09295 PF01546 Peptidase family M20/M25/M40 D5400_09305 PF01979 Amidohydrolase family D5400_09310 PF00005 ABC transporter D5400_09315 PF00528 Binding-protein-dependent transport system inner membrane component D5400_09320 PF00528 Binding-protein-dependent transport system inner membrane component D5400_09340 PF00027 Cyclic nucleotide-binding domain D5400_09340 PF13545 Crp-like helix-turn-helix domain D5400_09350 PF08281 Sigma-70, region 4 D5400_09350 PF04542 Sigma-70 region 2 D5400_09360 PF00072 Response regulator receiver domain D5400_09365 PF05532 CsbD-like D5400_09385 PF02801 Beta-ketoacyl synthase, C-terminal domain D5400_09385 PF00550 Phosphopantetheine attachment site D5400_09385 PF00109 Beta-ketoacyl synthase, N-terminal domain D5400_09385 PF14765 Polyketide synthase dehydratase D5400_09385 PF16197 Ketoacyl-synthetase C-terminal extension D5400_09385 PF08659 KR domain D5400_09385 PF08240 Alcohol dehydrogenase GroES-like domain D5400_09385 PF00698 Acyl transferase domain D5400_09390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D5400_09390 PF02770 Acyl-CoA dehydrogenase, middle domain D5400_09390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D5400_09410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_09410 PF03459 TOBE domain D5400_09420 PF00528 Binding-protein-dependent transport system inner membrane component D5400_09425 PF00005 ABC transporter D5400_09425 PF03459 TOBE domain D5400_09430 PF00106 short chain dehydrogenase D5400_09435 PF01464 Transglycosylase SLT domain D5400_09435 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5400_09440 PF07943 Penicillin-binding protein 5, C-terminal domain D5400_09440 PF00768 D-alanyl-D-alanine carboxypeptidase D5400_09460 PF17151 Periplasmic sensor domain D5400_09460 PF00990 Diguanylate cyclase, GGDEF domain D5400_09465 PF01590 GAF domain D5400_09465 PF00563 EAL domain D5400_09465 PF00990 Diguanylate cyclase, GGDEF domain D5400_09465 PF00360 Phytochrome region D5400_09475 PF03743 Bacterial conjugation TrbI-like protein D5400_09490 PF04610 TrbL/VirB6 plasmid conjugal transfer protein D5400_09505 PF03135 CagE, TrbE, VirB family, component of type IV transporter system D5400_09520 PF00437 Type II/IV secretion system protein D5400_09525 PF00106 short chain dehydrogenase D5400_09540 PF00665 Integrase core domain D5400_09545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D5400_09545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D5400_09545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D5400_09545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D5400_09555 PF00403 Heavy-metal-associated domain D5400_09580 PF01569 PAP2 superfamily D5400_09590 PF07731 Multicopper oxidase D5400_09590 PF07732 Multicopper oxidase D5400_09600 PF09278 MerR, DNA binding D5400_09600 PF00376 MerR family regulatory protein D5400_09610 PF04945 YHS domain D5400_09655 PF00873 AcrB/AcrD/AcrF family D5400_09740 PF07732 Multicopper oxidase D5400_09745 PF02742 Iron dependent repressor, metal binding and dimerisation domain D5400_09745 PF01325 Iron dependent repressor, N-terminal DNA binding domain D5400_09750 PF13411 MerR HTH family regulatory protein D5400_09760 PF02630 SCO1/SenC D5400_09785 PF01252 Signal peptidase (SPase) II D5400_09790 PF03734 L,D-transpeptidase catalytic domain D5400_09800 PF03734 L,D-transpeptidase catalytic domain D5400_09800 PF01476 LysM domain D5400_09815 PF13462 Thioredoxin D5400_09830 PF05425 Copper resistance protein D D5400_09840 PF01545 Cation efflux family D5400_09845 PF04191 Phospholipid methyltransferase D5400_09850 PF00403 Heavy-metal-associated domain D5400_09865 PF07690 Major Facilitator Superfamily D5400_09905 PF00394 Multicopper oxidase D5400_09905 PF07731 Multicopper oxidase D5400_09905 PF07732 Multicopper oxidase D5400_09930 PF00271 Helicase conserved C-terminal domain D5400_09930 PF12344 Ultra-violet resistance protein B D5400_09930 PF17757 UvrB interaction domain D5400_09930 PF04851 Type III restriction enzyme, res subunit D5400_09930 PF02151 UvrB/uvrC motif D5400_09950 PF00291 Pyridoxal-phosphate dependent enzyme D5400_09955 PF00291 Pyridoxal-phosphate dependent enzyme D5400_09955 PF00571 CBS domain D5400_09960 PF00288 GHMP kinases N terminal domain D5400_09965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_09965 PF03466 LysR substrate binding domain D5400_09985 PF08401 Domain of unknown function (DUF1738) D5400_09985 PF18818 Metallopeptidase superfamily domain D5400_10000 PF00589 Phage integrase family D5400_10000 PF02899 Phage integrase, N-terminal SAM-like domain D5400_10010 PF01261 Xylose isomerase-like TIM barrel D5400_10015 PF00596 Class II Aldolase and Adducin N-terminal domain D5400_10020 PF17042 Nucleotide-binding C-terminal domain D5400_10020 PF07005 Sugar-binding N-terminal domain D5400_10025 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D5400_10025 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D5400_10030 PF01370 NAD dependent epimerase/dehydratase family D5400_10040 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_10050 PF03480 Bacterial extracellular solute-binding protein, family 7 D5400_10055 PF07729 FCD domain D5400_10055 PF00392 Bacterial regulatory proteins, gntR family D5400_10060 PF00171 Aldehyde dehydrogenase family D5400_10065 PF07729 FCD domain D5400_10065 PF00392 Bacterial regulatory proteins, gntR family D5400_10070 PF10727 Rossmann-like domain D5400_10070 PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term D5400_10075 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain D5400_10075 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain D5400_10080 PF17042 Nucleotide-binding C-terminal domain D5400_10080 PF07005 Sugar-binding N-terminal domain D5400_10090 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D5400_10090 PF13244 Domain of unknown function (DUF4040) D5400_10090 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D5400_10090 PF00361 Proton-conducting membrane transporter D5400_10095 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D5400_10100 PF00361 Proton-conducting membrane transporter D5400_10105 PF01899 Na+/H+ ion antiporter subunit D5400_10110 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D5400_10115 PF03334 Na+/H+ antiporter subunit D5400_10125 PF05199 GMC oxidoreductase D5400_10125 PF00732 GMC oxidoreductase D5400_10135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D5400_10145 PF02659 Putative manganese efflux pump D5400_10150 PF00459 Inositol monophosphatase family D5400_10155 PF00009 Elongation factor Tu GTP binding domain D5400_10165 PF03480 Bacterial extracellular solute-binding protein, family 7 D5400_10175 PF12849 PBP superfamily domain D5400_10180 PF00005 ABC transporter D5400_10185 PF00528 Binding-protein-dependent transport system inner membrane component D5400_10195 PF01266 FAD dependent oxidoreductase D5400_10200 PF00701 Dihydrodipicolinate synthetase family D5400_10205 PF02653 Branched-chain amino acid transport system / permease component D5400_10210 PF11862 Domain of unknown function (DUF3382) D5400_10210 PF02653 Branched-chain amino acid transport system / permease component D5400_10215 PF00005 ABC transporter D5400_10215 PF12399 Branched-chain amino acid ATP-binding cassette transporter D5400_10220 PF00005 ABC transporter D5400_10230 PF13458 Periplasmic binding protein D5400_10250 PF00550 Phosphopantetheine attachment site D5400_10255 PF00118 TCP-1/cpn60 chaperonin family D5400_10260 PF00166 Chaperonin 10 Kd subunit D5400_10265 PF06233 Usg-like family D5400_10270 PF01595 Cyclin M transmembrane N-terminal domain D5400_10270 PF03471 Transporter associated domain D5400_10270 PF00571 CBS domain D5400_10275 PF01554 MatE D5400_10280 PF01774 UreD urease accessory protein D5400_10285 PF00547 Urease, gamma subunit D5400_10290 PF00699 Urease beta subunit D5400_10300 PF00449 Urease alpha-subunit, N-terminal domain D5400_10300 PF01979 Amidohydrolase family D5400_10315 PF02814 UreE urease accessory protein, N-terminal domain D5400_10315 PF05194 UreE urease accessory protein, C-terminal domain D5400_10320 PF01730 UreF D5400_10325 PF02492 CobW/HypB/UreG, nucleotide-binding domain D5400_10345 PF14403 Circularly permuted ATP-grasp type 2 D5400_10355 PF00271 Helicase conserved C-terminal domain D5400_10355 PF00270 DEAD/DEAH box helicase D5400_10360 PF13458 Periplasmic binding protein D5400_10365 PF00563 EAL domain D5400_10365 PF00990 Diguanylate cyclase, GGDEF domain D5400_10365 PF03707 Bacterial signalling protein N terminal repeat D5400_10375 PF02653 Branched-chain amino acid transport system / permease component D5400_10380 PF00005 ABC transporter D5400_10385 PF00005 ABC transporter D5400_10385 PF12399 Branched-chain amino acid ATP-binding cassette transporter D5400_10390 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D5400_10395 PF00528 Binding-protein-dependent transport system inner membrane component D5400_10400 PF00571 CBS domain D5400_10400 PF00005 ABC transporter D5400_10405 PF00672 HAMP domain D5400_10405 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5400_10405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_10405 PF00072 Response regulator receiver domain D5400_10405 PF00512 His Kinase A (phospho-acceptor) domain D5400_10405 PF01627 Hpt domain D5400_10410 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D5400_10410 PF01266 FAD dependent oxidoreductase D5400_10415 PF01266 FAD dependent oxidoreductase D5400_10430 PF03561 Allantoicase repeat D5400_10435 PF04115 Ureidoglycolate lyase D5400_10440 PF00576 HIUase/Transthyretin family D5400_10445 PF01979 Amidohydrolase family D5400_10455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_10455 PF03466 LysR substrate binding domain D5400_10470 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D5400_10470 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D5400_10475 PF01799 [2Fe-2S] binding domain D5400_10475 PF00111 2Fe-2S iron-sulfur cluster binding domain D5400_10490 PF13188 PAS domain D5400_10490 PF00158 Sigma-54 interaction domain D5400_10490 PF02954 Bacterial regulatory protein, Fis family D5400_10495 PF02653 Branched-chain amino acid transport system / permease component D5400_10505 PF12399 Branched-chain amino acid ATP-binding cassette transporter D5400_10505 PF00005 ABC transporter D5400_10510 PF00005 ABC transporter D5400_10515 PF00080 Copper/zinc superoxide dismutase (SODC) D5400_10530 PF04209 homogentisate 1,2-dioxygenase D5400_10535 PF12706 Beta-lactamase superfamily domain D5400_10560 PF01494 FAD binding domain D5400_10570 PF00248 Aldo/keto reductase family D5400_10575 PF04955 HupE / UreJ protein D5400_10580 PF01297 Zinc-uptake complex component A periplasmic D5400_10585 PF00005 ABC transporter D5400_10590 PF00950 ABC 3 transport family D5400_10595 PF01475 Ferric uptake regulator family D5400_10600 PF00871 Acetokinase family D5400_10605 PF01207 Dihydrouridine synthase (Dus) D5400_10615 PF00313 'Cold-shock' DNA-binding domain D5400_10630 PF00989 PAS fold D5400_10630 PF00512 His Kinase A (phospho-acceptor) domain D5400_10630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_10635 PF02798 Glutathione S-transferase, N-terminal domain D5400_10635 PF00043 Glutathione S-transferase, C-terminal domain D5400_10640 PF03167 Uracil DNA glycosylase superfamily D5400_10645 PF13404 AsnC-type helix-turn-helix domain D5400_10645 PF01037 Lrp/AsnC ligand binding domain D5400_10655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D5400_10655 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D5400_10660 PF01804 Penicillin amidase D5400_10665 PF00072 Response regulator receiver domain D5400_10665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_10665 PF13426 PAS domain D5400_10670 PF00072 Response regulator receiver domain D5400_10675 PF13581 Histidine kinase-like ATPase domain D5400_10675 PF13426 PAS domain D5400_10675 PF07536 HWE histidine kinase D5400_10680 PF00528 Binding-protein-dependent transport system inner membrane component D5400_10685 PF00528 Binding-protein-dependent transport system inner membrane component D5400_10690 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5400_10695 PF00994 Probable molybdopterin binding domain D5400_10695 PF03454 MoeA C-terminal region (domain IV) D5400_10695 PF03453 MoeA N-terminal region (domain I and II) D5400_10705 PF12804 MobA-like NTP transferase domain D5400_10710 PF02634 FdhD/NarQ family D5400_10715 PF07690 Major Facilitator Superfamily D5400_10750 PF02151 UvrB/uvrC motif D5400_10750 PF17757 UvrB interaction domain D5400_10750 PF12344 Ultra-violet resistance protein B D5400_10750 PF00271 Helicase conserved C-terminal domain D5400_10750 PF04851 Type III restriction enzyme, res subunit D5400_10765 PF13426 PAS domain D5400_10765 PF08447 PAS fold D5400_10765 PF07536 HWE histidine kinase D5400_10770 PF06745 KaiC D5400_10775 PF07536 HWE histidine kinase D5400_10775 PF08447 PAS fold D5400_10775 PF13426 PAS domain D5400_10780 PF03061 Thioesterase superfamily D5400_10790 PF01590 GAF domain D5400_10790 PF00563 EAL domain D5400_10790 PF00360 Phytochrome region D5400_10790 PF00990 Diguanylate cyclase, GGDEF domain D5400_10795 PF02583 Metal-sensitive transcriptional repressor D5400_10800 PF01545 Cation efflux family D5400_10805 PF00916 Sulfate permease family D5400_10805 PF01740 STAS domain D5400_10810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5400_10810 PF13426 PAS domain D5400_10810 PF08447 PAS fold D5400_10820 PF18029 Glyoxalase-like domain D5400_10825 PF07237 Protein of unknown function (DUF1428) D5400_10835 PF00313 'Cold-shock' DNA-binding domain D5400_10845 PF08281 Sigma-70, region 4 D5400_10845 PF04542 Sigma-70 region 2 D5400_10850 PF03795 YCII-related domain D5400_10860 PF05721 Phytanoyl-CoA dioxygenase (PhyH) D5400_10865 PF01925 Sulfite exporter TauE/SafE D5400_10880 PF02654 Cobalamin-5-phosphate synthase D5400_10885 PF02277 Phosphoribosyltransferase D5400_10895 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase D5400_10900 PF01219 Prokaryotic diacylglycerol kinase D5400_10910 PF02540 NAD synthase D5400_10910 PF00795 Carbon-nitrogen hydrolase D5400_10920 PF01061 ABC-2 type transporter D5400_10925 PF00005 ABC transporter D5400_10930 PF01165 Ribosomal protein S21 D5400_10935 PF00749 tRNA synthetases class I (E and Q), catalytic domain D5400_10945 PF00390 Malic enzyme, N-terminal domain D5400_10945 PF01515 Phosphate acetyl/butaryl transferase D5400_10945 PF03949 Malic enzyme, NAD binding domain D5400_10950 PF00149 Calcineurin-like phosphoesterase D5400_10960 PF12832 MFS_1 like family D5400_10965 PF02405 Permease MlaE D5400_10970 PF00005 ABC transporter D5400_10980 PF02470 MlaD protein D5400_10980 PF03886 ABC-type transport auxiliary lipoprotein component D5400_10995 PF00111 2Fe-2S iron-sulfur cluster binding domain D5400_11000 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5400_11010 PF00809 Pterin binding enzyme D5400_11020 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D5400_11030 PF05128 Domain of unknown function (DUF697) D5400_11035 PF04317 YcjX-like family, DUF463 D5400_11045 PF01258 Prokaryotic dksA/traR C4-type zinc finger D5400_11050 PF00561 alpha/beta hydrolase fold D5400_11060 PF00512 His Kinase A (phospho-acceptor) domain D5400_11060 PF00072 Response regulator receiver domain D5400_11060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_11060 PF13188 PAS domain D5400_11060 PF08448 PAS fold D5400_11070 PF13488 Glycine zipper D5400_11070 PF00691 OmpA family D5400_11080 PF04227 Indigoidine synthase A like protein D5400_11090 PF00154 recA bacterial DNA recombination protein D5400_11095 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D5400_11095 PF01411 tRNA synthetases class II (A) D5400_11095 PF02272 DHHA1 domain D5400_11105 PF04960 Glutaminase D5400_11115 PF00211 Adenylate and Guanylate cyclase catalytic domain D5400_11120 PF00180 Isocitrate/isopropylmalate dehydrogenase D5400_11125 PF00588 SpoU rRNA Methylase family D5400_11130 PF01177 Asp/Glu/Hydantoin racemase D5400_11135 PF01679 Proteolipid membrane potential modulator D5400_11140 PF00163 Ribosomal protein S4/S9 N-terminal domain D5400_11140 PF01479 S4 domain D5400_11150 PF01171 PP-loop family D5400_11155 PF07690 Major Facilitator Superfamily D5400_11160 PF07690 Major Facilitator Superfamily D5400_11165 PF00462 Glutaredoxin D5400_11175 PF02769 AIR synthase related protein, C-terminal domain D5400_11175 PF00586 AIR synthase related protein, N-terminal domain D5400_11175 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D5400_11190 PF03301 Tryptophan 2,3-dioxygenase D5400_11200 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase D5400_11205 PF01259 SAICAR synthetase D5400_11215 PF03328 HpcH/HpaI aldolase/citrate lyase family D5400_11230 PF10397 Adenylosuccinate lyase C-terminus D5400_11230 PF00206 Lyase D5400_11235 PF00834 Ribulose-phosphate 3 epimerase family D5400_11240 PF03576 Peptidase family S58 D5400_11250 PF01613 Flavin reductase like domain D5400_11255 PF02190 ATP-dependent protease La (LON) substrate-binding domain D5400_11255 PF00004 ATPase family associated with various cellular activities (AAA) D5400_11255 PF05362 Lon protease (S16) C-terminal proteolytic domain D5400_11270 PF02625 XdhC and CoxI family D5400_11270 PF13478 XdhC Rossmann domain D5400_11290 PF14579 Helix-hairpin-helix motif D5400_11290 PF02811 PHP domain D5400_11290 PF07733 Bacterial DNA polymerase III alpha NTPase domain D5400_11290 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D5400_11300 PF17820 PDZ domain D5400_11300 PF13180 PDZ domain D5400_11305 PF12002 MgsA AAA+ ATPase C terminal D5400_11305 PF16193 AAA C-terminal domain D5400_11305 PF00004 ATPase family associated with various cellular activities (AAA) D5400_11320 PF00360 Phytochrome region D5400_11320 PF08446 PAS fold D5400_11320 PF00512 His Kinase A (phospho-acceptor) domain D5400_11320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_11320 PF01590 GAF domain D5400_11325 PF00072 Response regulator receiver domain D5400_11330 PF08447 PAS fold D5400_11330 PF13426 PAS domain D5400_11330 PF07536 HWE histidine kinase D5400_11340 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D5400_11345 PF00849 RNA pseudouridylate synthase D5400_11345 PF01479 S4 domain D5400_11355 PF01039 Carboxyl transferase domain D5400_11380 PF00756 Putative esterase D5400_11385 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 D5400_11390 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D5400_11400 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5400_11400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D5400_11415 PF01474 Class-II DAHP synthetase family D5400_11435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D5400_11450 PF03547 Membrane transport protein D5400_11455 PF01494 FAD binding domain D5400_11465 PF00107 Zinc-binding dehydrogenase D5400_11465 PF08240 Alcohol dehydrogenase GroES-like domain D5400_11485 PF02608 ABC transporter substrate-binding protein PnrA-like D5400_11490 PF00873 AcrB/AcrD/AcrF family D5400_11505 PF01734 Patatin-like phospholipase D5400_11510 PF01502 Phosphoribosyl-AMP cyclohydrolase D5400_11515 PF01227 GTP cyclohydrolase I D5400_11525 PF01809 Putative membrane protein insertion efficiency factor D5400_11530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D5400_11530 PF02824 TGS domain D5400_11530 PF03129 Anticodon binding domain D5400_11530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D5400_11545 PF01613 Flavin reductase like domain D5400_11550 PF03328 HpcH/HpaI aldolase/citrate lyase family D5400_11565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_11565 PF01751 Toprim domain D5400_11565 PF00204 DNA gyrase B D5400_11565 PF00986 DNA gyrase B subunit, carboxyl terminus D5400_11665 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) D5400_11805 PF00893 Small Multidrug Resistance protein D5400_11810 PF00579 tRNA synthetases class I (W and Y) D5400_11815 PF03702 Anhydro-N-acetylmuramic acid kinase D5400_11825 PF02129 X-Pro dipeptidyl-peptidase (S15 family) D5400_11835 PF01458 Uncharacterized protein family (UPF0051) D5400_11840 PF00005 ABC transporter D5400_11845 PF01458 Uncharacterized protein family (UPF0051) D5400_11850 PF00266 Aminotransferase class-V D5400_11855 PF01883 Iron-sulfur cluster assembly protein D5400_11860 PF01521 Iron-sulphur cluster biosynthesis D5400_11870 PF03480 Bacterial extracellular solute-binding protein, family 7 D5400_11875 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_11890 PF00271 Helicase conserved C-terminal domain D5400_11890 PF00270 DEAD/DEAH box helicase D5400_11895 PF01476 LysM domain D5400_11895 PF08525 Opacity-associated protein A N-terminal motif D5400_11895 PF01551 Peptidase family M23 D5400_11900 PF04305 Protein of unknown function (DUF455) D5400_11905 PF00578 AhpC/TSA family D5400_11915 PF00588 SpoU rRNA Methylase family D5400_11915 PF08032 RNA 2'-O ribose methyltransferase substrate binding D5400_11945 PF00005 ABC transporter D5400_11960 PF02525 Flavodoxin-like fold D5400_11980 PF00011 Hsp20/alpha crystallin family D5400_12010 PF00595 PDZ domain D5400_12015 PF00571 CBS domain D5400_12020 PF13545 Crp-like helix-turn-helix domain D5400_12020 PF00027 Cyclic nucleotide-binding domain D5400_12030 PF00392 Bacterial regulatory proteins, gntR family D5400_12030 PF07702 UTRA domain D5400_12035 PF13458 Periplasmic binding protein D5400_12040 PF02653 Branched-chain amino acid transport system / permease component D5400_12045 PF02653 Branched-chain amino acid transport system / permease component D5400_12045 PF11862 Domain of unknown function (DUF3382) D5400_12050 PF12399 Branched-chain amino acid ATP-binding cassette transporter D5400_12050 PF00005 ABC transporter D5400_12055 PF00005 ABC transporter D5400_12060 PF00330 Aconitase family (aconitate hydratase) D5400_12065 PF00694 Aconitase C-terminal domain D5400_12080 PF01968 Hydantoinase/oxoprolinase D5400_12080 PF05378 Hydantoinase/oxoprolinase N-terminal region D5400_12085 PF00857 Isochorismatase family D5400_12090 PF14537 Cytochrome c3 D5400_12090 PF00890 FAD binding domain D5400_12100 PF03144 Elongation factor Tu domain 2 D5400_12100 PF00009 Elongation factor Tu GTP binding domain D5400_12100 PF03143 Elongation factor Tu C-terminal domain D5400_12110 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D5400_12115 PF00467 KOW motif D5400_12115 PF02357 Transcription termination factor nusG D5400_12120 PF00298 Ribosomal protein L11, RNA binding domain D5400_12120 PF03946 Ribosomal protein L11, N-terminal domain D5400_12125 PF00687 Ribosomal protein L1p/L10e family D5400_12130 PF00466 Ribosomal protein L10 D5400_12135 PF16320 Ribosomal protein L7/L12 dimerisation domain D5400_12135 PF00542 Ribosomal protein L7/L12 C-terminal domain D5400_12140 PF00562 RNA polymerase Rpb2, domain 6 D5400_12140 PF04560 RNA polymerase Rpb2, domain 7 D5400_12140 PF10385 RNA polymerase beta subunit external 1 domain D5400_12140 PF04565 RNA polymerase Rpb2, domain 3 D5400_12140 PF04561 RNA polymerase Rpb2, domain 2 D5400_12140 PF04563 RNA polymerase beta subunit D5400_12145 PF04998 RNA polymerase Rpb1, domain 5 D5400_12145 PF05000 RNA polymerase Rpb1, domain 4 D5400_12145 PF04983 RNA polymerase Rpb1, domain 3 D5400_12145 PF00623 RNA polymerase Rpb1, domain 2 D5400_12145 PF04997 RNA polymerase Rpb1, domain 1 D5400_12155 PF00164 Ribosomal protein S12/S23 D5400_12160 PF00177 Ribosomal protein S7p/S5e D5400_12165 PF03144 Elongation factor Tu domain 2 D5400_12165 PF00009 Elongation factor Tu GTP binding domain D5400_12165 PF03764 Elongation factor G, domain IV D5400_12165 PF14492 Elongation Factor G, domain II D5400_12165 PF00679 Elongation factor G C-terminus D5400_12170 PF03144 Elongation factor Tu domain 2 D5400_12170 PF00009 Elongation factor Tu GTP binding domain D5400_12170 PF03143 Elongation factor Tu C-terminal domain D5400_12175 PF00338 Ribosomal protein S10p/S20e D5400_12180 PF00297 Ribosomal protein L3 D5400_12185 PF00573 Ribosomal protein L4/L1 family D5400_12190 PF00276 Ribosomal protein L23 D5400_12195 PF03947 Ribosomal Proteins L2, C-terminal domain D5400_12195 PF00181 Ribosomal Proteins L2, RNA binding domain D5400_12200 PF00203 Ribosomal protein S19 D5400_12205 PF00237 Ribosomal protein L22p/L17e D5400_12210 PF00189 Ribosomal protein S3, C-terminal domain D5400_12210 PF07650 KH domain D5400_12215 PF00252 Ribosomal protein L16p/L10e D5400_12220 PF00831 Ribosomal L29 protein D5400_12225 PF00366 Ribosomal protein S17 D5400_12230 PF00238 Ribosomal protein L14p/L23e D5400_12235 PF00467 KOW motif D5400_12235 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D5400_12240 PF00673 ribosomal L5P family C-terminus D5400_12240 PF00281 Ribosomal protein L5 D5400_12245 PF00253 Ribosomal protein S14p/S29e D5400_12250 PF00410 Ribosomal protein S8 D5400_12255 PF00347 Ribosomal protein L6 D5400_12260 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D5400_12265 PF00333 Ribosomal protein S5, N-terminal domain D5400_12265 PF03719 Ribosomal protein S5, C-terminal domain D5400_12270 PF00327 Ribosomal protein L30p/L7e D5400_12275 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D5400_12280 PF00344 SecY translocase D5400_12285 PF05191 Adenylate kinase, active site lid D5400_12290 PF00416 Ribosomal protein S13/S18 D5400_12295 PF00411 Ribosomal protein S11 D5400_12300 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D5400_12300 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D5400_12300 PF01000 RNA polymerase Rpb3/RpoA insert domain D5400_12305 PF01196 Ribosomal protein L17 D5400_12315 PF08240 Alcohol dehydrogenase GroES-like domain D5400_12315 PF13823 Alcohol dehydrogenase GroES-associated D5400_12315 PF00107 Zinc-binding dehydrogenase D5400_12325 PF08471 Class II vitamin B12-dependent ribonucleotide reductase D5400_12325 PF02867 Ribonucleotide reductase, barrel domain D5400_12335 PF01384 Phosphate transporter family D5400_12350 PF12833 Helix-turn-helix domain D5400_12350 PF06719 AraC-type transcriptional regulator N-terminus D5400_12355 PF00156 Phosphoribosyl transferase domain D5400_12360 PF02464 Competence-damaged protein D5400_12360 PF00994 Probable molybdopterin binding domain D5400_12365 PF03358 NADPH-dependent FMN reductase D5400_12390 PF06463 Molybdenum Cofactor Synthesis C D5400_12390 PF04055 Radical SAM superfamily D5400_12400 PF17158 Membrane-associated sensor, integral membrane domain D5400_12400 PF00990 Diguanylate cyclase, GGDEF domain D5400_12405 PF05683 Fumarase C-terminus D5400_12405 PF05681 Fumarate hydratase (Fumerase) D5400_12410 PF03734 L,D-transpeptidase catalytic domain D5400_12410 PF01471 Putative peptidoglycan binding domain D5400_12415 PF13419 Haloacid dehalogenase-like hydrolase D5400_12420 PF08240 Alcohol dehydrogenase GroES-like domain D5400_12420 PF00107 Zinc-binding dehydrogenase D5400_12435 PF00289 Biotin carboxylase, N-terminal domain D5400_12435 PF02785 Biotin carboxylase C-terminal domain D5400_12435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D5400_12440 PF03099 Biotin/lipoate A/B protein ligase family D5400_12535 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) D5400_12550 PF00145 C-5 cytosine-specific DNA methylase D5400_12590 PF01343 Peptidase family S49 D5400_12735 PF00571 CBS domain D5400_12735 PF01769 Divalent cation transporter D5400_12735 PF03448 MgtE intracellular N domain D5400_12740 PF00376 MerR family regulatory protein D5400_12740 PF09278 MerR, DNA binding D5400_12750 PF00248 Aldo/keto reductase family D5400_12760 PF03313 Serine dehydratase alpha chain D5400_12760 PF03315 Serine dehydratase beta chain D5400_12775 PF00226 DnaJ domain D5400_12775 PF00684 DnaJ central domain D5400_12775 PF01556 DnaJ C terminal domain D5400_12790 PF02617 ATP-dependent Clp protease adaptor protein ClpS D5400_12795 PF00004 ATPase family associated with various cellular activities (AAA) D5400_12795 PF07724 AAA domain (Cdc48 subfamily) D5400_12795 PF02861 Clp amino terminal domain, pathogenicity island component D5400_12795 PF10431 C-terminal, D2-small domain, of ClpB protein D5400_12795 PF17871 AAA lid domain D5400_12810 PF02542 YgbB family D5400_12810 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D5400_12815 PF01207 Dihydrouridine synthase (Dus) D5400_12820 PF00512 His Kinase A (phospho-acceptor) domain D5400_12820 PF00989 PAS fold D5400_12820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_12825 PF02954 Bacterial regulatory protein, Fis family D5400_12825 PF00158 Sigma-54 interaction domain D5400_12825 PF00072 Response regulator receiver domain D5400_12830 PF00672 HAMP domain D5400_12830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_12830 PF00512 His Kinase A (phospho-acceptor) domain D5400_12830 PF00989 PAS fold D5400_12835 PF00072 Response regulator receiver domain D5400_12835 PF00158 Sigma-54 interaction domain D5400_12835 PF02954 Bacterial regulatory protein, Fis family D5400_12850 PF14226 non-haem dioxygenase in morphine synthesis N-terminal D5400_12850 PF03171 2OG-Fe(II) oxygenase superfamily D5400_12865 PF00005 ABC transporter D5400_12865 PF08402 TOBE domain D5400_12870 PF00491 Arginase family D5400_12885 PF03795 YCII-related domain D5400_12905 PF03330 Lytic transglycolase D5400_12905 PF05036 Sporulation related domain D5400_12910 PF00768 D-alanyl-D-alanine carboxypeptidase D5400_12910 PF07943 Penicillin-binding protein 5, C-terminal domain D5400_12915 PF02223 Thymidylate kinase D5400_12925 PF09334 tRNA synthetases class I (M) D5400_12925 PF08264 Anticodon-binding domain of tRNA D5400_12930 PF01026 TatD related DNase D5400_12935 PF12706 Beta-lactamase superfamily domain D5400_12935 PF03099 Biotin/lipoate A/B protein ligase family D5400_12945 PF03819 MazG nucleotide pyrophosphohydrolase domain D5400_12950 PF13167 GTP-binding GTPase N-terminal D5400_12950 PF16360 GTP-binding GTPase Middle Region D5400_12950 PF01926 50S ribosome-binding GTPase D5400_12955 PF17209 Hfq protein D5400_12960 PF01063 Amino-transferase class IV D5400_12965 PF02386 Cation transport protein D5400_12970 PF02080 TrkA-C domain D5400_12970 PF02254 TrkA-N domain D5400_12975 PF13505 Outer membrane protein beta-barrel domain D5400_12985 PF01513 ATP-NAD kinase D5400_12990 PF00436 Single-strand binding protein family D5400_12995 PF17760 UvrA interaction domain D5400_12995 PF17755 UvrA DNA-binding domain D5400_13000 PF00043 Glutathione S-transferase, C-terminal domain D5400_13000 PF13417 Glutathione S-transferase, N-terminal domain D5400_13010 PF00543 Nitrogen regulatory protein P-II D5400_13015 PF03951 Glutamine synthetase, beta-Grasp domain D5400_13015 PF00120 Glutamine synthetase, catalytic domain D5400_13025 PF00271 Helicase conserved C-terminal domain D5400_13025 PF00570 HRDC domain D5400_13025 PF00270 DEAD/DEAH box helicase D5400_13025 PF16124 RecQ zinc-binding D5400_13025 PF09382 RQC domain D5400_13035 PF04011 LemA family D5400_13045 PF00924 Mechanosensitive ion channel D5400_13055 PF00171 Aldehyde dehydrogenase family D5400_13060 PF00551 Formyl transferase D5400_13065 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D5400_13065 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D5400_13075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D5400_13075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D5400_13075 PF02770 Acyl-CoA dehydrogenase, middle domain D5400_13080 PF00111 2Fe-2S iron-sulfur cluster binding domain D5400_13090 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D5400_13090 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D5400_13100 PF10414 Sirohaem synthase dimerisation region D5400_13100 PF14824 Sirohaem biosynthesis protein central D5400_13100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D5400_13110 PF01702 Queuine tRNA-ribosyltransferase D5400_13115 PF02547 Queuosine biosynthesis protein D5400_13125 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D5400_13130 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D5400_13135 PF01467 Cytidylyltransferase-like D5400_13140 PF00521 DNA gyrase/topoisomerase IV, subunit A D5400_13140 PF03989 DNA gyrase C-terminal domain, beta-propeller D5400_13145 PF02684 Lipid-A-disaccharide synthetase D5400_13150 PF17930 LpxI N-terminal domain D5400_13150 PF06230 LpxI C-terminal domain D5400_13155 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D5400_13155 PF00132 Bacterial transferase hexapeptide (six repeats) D5400_13160 PF07977 FabA-like domain D5400_13165 PF00132 Bacterial transferase hexapeptide (six repeats) D5400_13165 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D5400_13170 PF07244 Surface antigen variable number repeat D5400_13170 PF01103 Surface antigen D5400_13175 PF02163 Peptidase family M50 D5400_13175 PF17820 PDZ domain D5400_13185 PF01255 Putative undecaprenyl diphosphate synthase D5400_13190 PF01765 Ribosome recycling factor D5400_13195 PF00696 Amino acid kinase family D5400_13200 PF00889 Elongation factor TS D5400_13205 PF00318 Ribosomal protein S2 D5400_13210 PF00512 His Kinase A (phospho-acceptor) domain D5400_13210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_13210 PF00989 PAS fold D5400_13210 PF01627 Hpt domain D5400_13210 PF00072 Response regulator receiver domain D5400_13210 PF18415 Histidine kinase receptor ArcB trans-membrane domain D5400_13215 PF00072 Response regulator receiver domain D5400_13220 PF02954 Bacterial regulatory protein, Fis family D5400_13220 PF00072 Response regulator receiver domain D5400_13230 PF01292 Prokaryotic cytochrome b561 D5400_13235 PF00174 Oxidoreductase molybdopterin binding domain D5400_13260 PF00893 Small Multidrug Resistance protein D5400_13265 PF01230 HIT domain D5400_13270 PF03364 Polyketide cyclase / dehydrase and lipid transport D5400_13275 PF04055 Radical SAM superfamily D5400_13275 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family D5400_13285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D5400_13285 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5400_13295 PF02817 e3 binding domain D5400_13295 PF00364 Biotin-requiring enzyme D5400_13295 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D5400_13300 PF00364 Biotin-requiring enzyme D5400_13300 PF02780 Transketolase, C-terminal domain D5400_13300 PF02779 Transketolase, pyrimidine binding domain D5400_13305 PF00676 Dehydrogenase E1 component D5400_13325 PF16868 NMT1-like family D5400_13340 PF00072 Response regulator receiver domain D5400_13340 PF00486 Transcriptional regulatory protein, C terminal D5400_13345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_13345 PF08918 PhoQ Sensor D5400_13350 PF00571 CBS domain D5400_13350 PF00478 IMP dehydrogenase / GMP reductase domain D5400_13370 PF00132 Bacterial transferase hexapeptide (six repeats) D5400_13385 PF06426 Serine acetyltransferase, N-terminal D5400_13385 PF00132 Bacterial transferase hexapeptide (six repeats) D5400_13395 PF00561 alpha/beta hydrolase fold D5400_13395 PF00364 Biotin-requiring enzyme D5400_13405 PF01494 FAD binding domain D5400_13410 PF00005 ABC transporter D5400_13415 PF00528 Binding-protein-dependent transport system inner membrane component D5400_13420 PF00528 Binding-protein-dependent transport system inner membrane component D5400_13425 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5400_13430 PF01053 Cys/Met metabolism PLP-dependent enzyme D5400_13445 PF00113 Enolase, C-terminal TIM barrel domain D5400_13445 PF03952 Enolase, N-terminal domain D5400_13455 PF00793 DAHP synthetase I family D5400_13465 PF00117 Glutamine amidotransferase class-I D5400_13465 PF06418 CTP synthase N-terminus D5400_13475 PF00121 Triosephosphate isomerase D5400_13480 PF13145 PPIC-type PPIASE domain D5400_13485 PF02885 Glycosyl transferase family, helical bundle domain D5400_13485 PF00591 Glycosyl transferase family, a/b domain D5400_13490 PF00218 Indole-3-glycerol phosphate synthase D5400_13495 PF01967 MoaC family D5400_13500 PF03453 MoeA N-terminal region (domain I and II) D5400_13500 PF00994 Probable molybdopterin binding domain D5400_13500 PF03454 MoeA C-terminal region (domain IV) D5400_13505 PF00717 Peptidase S24-like D5400_13505 PF01726 LexA DNA binding domain D5400_13510 PF00753 Metallo-beta-lactamase superfamily D5400_13510 PF03772 Competence protein D5400_13515 PF00749 tRNA synthetases class I (E and Q), catalytic domain D5400_13520 PF00285 Citrate synthase, C-terminal domain D5400_13525 PF01914 MarC family integral membrane protein D5400_13545 PF17092 Penicillin-binding protein OB-like domain D5400_13545 PF00905 Penicillin binding protein transpeptidase domain D5400_13545 PF00912 Transglycosylase D5400_13550 PF11741 AMIN domain D5400_13550 PF01520 N-acetylmuramoyl-L-alanine amidase D5400_13555 PF12111 Polyribonucleotide phosphorylase C terminal D5400_13555 PF00575 S1 RNA binding domain D5400_13555 PF10150 Ribonuclease E/G family D5400_13555 PF00575 S1 RNA binding domain D5400_13555 PF12111 Polyribonucleotide phosphorylase C terminal D5400_13555 PF10150 Ribonuclease E/G family D5400_13560 PF00155 Aminotransferase class I and II D5400_13575 PF01220 Dehydroquinase class II D5400_13580 PF00364 Biotin-requiring enzyme D5400_13585 PF02785 Biotin carboxylase C-terminal domain D5400_13585 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D5400_13585 PF00289 Biotin carboxylase, N-terminal domain D5400_13590 PF03588 Leucyl/phenylalanyl-tRNA protein transferase D5400_13595 PF01389 OmpA-like transmembrane domain D5400_13595 PF00691 OmpA family D5400_13615 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus D5400_13620 PF17746 SfsA N-terminal OB domain D5400_13620 PF03749 Sugar fermentation stimulation protein RE domain D5400_13625 PF00557 Metallopeptidase family M24 D5400_13630 PF04002 RadC-like JAB domain D5400_13635 PF04244 Deoxyribodipyrimidine photo-lyase-related protein D5400_13640 PF05697 Bacterial trigger factor protein (TF) D5400_13640 PF05698 Bacterial trigger factor protein (TF) C-terminus D5400_13640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D5400_13665 PF01134 Glucose inhibited division protein A D5400_13675 PF04116 Fatty acid hydroxylase superfamily D5400_13695 PF07549 SecD/SecF GG Motif D5400_13695 PF02355 Protein export membrane protein D5400_13700 PF02699 Preprotein translocase subunit D5400_13710 PF01551 Peptidase family M23 D5400_13710 PF01476 LysM domain D5400_13720 PF01975 Survival protein SurE D5400_13725 PF02403 Seryl-tRNA synthetase N-terminal domain D5400_13725 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D5400_13730 PF00902 Sec-independent protein translocase protein (TatC) D5400_13735 PF02416 mttA/Hcf106 family D5400_13740 PF02416 mttA/Hcf106 family D5400_13745 PF04079 Segregation and condensation complex subunit ScpB D5400_13750 PF02616 Segregation and condensation protein ScpA D5400_13755 PF00933 Glycosyl hydrolase family 3 N terminal domain D5400_13765 PF03485 Arginyl tRNA synthetase N terminal domain D5400_13765 PF05746 DALR anticodon binding domain D5400_13765 PF00750 tRNA synthetases class I (R) D5400_13770 PF01966 HD domain D5400_13770 PF13286 Phosphohydrolase-associated domain D5400_13775 PF01521 Iron-sulphur cluster biosynthesis D5400_13785 PF03372 Endonuclease/Exonuclease/phosphatase family D5400_13795 PF08238 Sel1 repeat D5400_13800 PF00920 Dehydratase family D5400_13810 PF10458 Valyl tRNA synthetase tRNA binding arm D5400_13810 PF00133 tRNA synthetases class I (I, L, M and V) D5400_13810 PF08264 Anticodon-binding domain of tRNA D5400_13820 PF02321 Outer membrane efflux protein D5400_13835 PF03775 Septum formation inhibitor MinC, C-terminal domain D5400_13840 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D5400_13845 PF03776 Septum formation topological specificity factor MinE D5400_13865 PF00875 DNA photolyase D5400_13865 PF03441 FAD binding domain of DNA photolyase D5400_13890 PF00106 short chain dehydrogenase D5400_13895 PF12973 ChrR Cupin-like domain D5400_13900 PF00291 Pyridoxal-phosphate dependent enzyme D5400_13905 PF02272 DHHA1 domain D5400_13905 PF01411 tRNA synthetases class II (A) D5400_13905 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D5400_13910 PF00581 Rhodanese-like domain D5400_13920 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D5400_13920 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D5400_13925 PF01037 Lrp/AsnC ligand binding domain D5400_13930 PF05977 Transmembrane secretion effector D5400_13940 PF00149 Calcineurin-like phosphoesterase D5400_13940 PF02872 5'-nucleotidase, C-terminal domain D5400_13945 PF02559 CarD-like/TRCF domain D5400_13945 PF00271 Helicase conserved C-terminal domain D5400_13945 PF17757 UvrB interaction domain D5400_13945 PF00270 DEAD/DEAH box helicase D5400_13945 PF03461 TRCF domain D5400_13950 PF03937 Flavinator of succinate dehydrogenase D5400_13955 PF00271 Helicase conserved C-terminal domain D5400_13955 PF00270 DEAD/DEAH box helicase D5400_13955 PF17191 RecG wedge domain D5400_13965 PF02683 Cytochrome C biogenesis protein transmembrane region D5400_14185 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) D5400_14300 PF01590 GAF domain D5400_14300 PF00990 Diguanylate cyclase, GGDEF domain D5400_14300 PF00563 EAL domain D5400_14300 PF00989 PAS fold D5400_14310 PF00313 'Cold-shock' DNA-binding domain D5400_14315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D5400_14330 PF02272 DHHA1 domain D5400_14330 PF17768 RecJ OB domain D5400_14330 PF01368 DHH family D5400_14335 PF03447 Homoserine dehydrogenase, NAD binding domain D5400_14335 PF00742 Homoserine dehydrogenase D5400_14335 PF01842 ACT domain D5400_14340 PF00155 Aminotransferase class I and II D5400_14350 PF02934 GatB/GatE catalytic domain D5400_14350 PF02637 GatB domain D5400_14360 PF01425 Amidase D5400_14370 PF02686 Glu-tRNAGln amidotransferase C subunit D5400_14375 PF00563 EAL domain D5400_14375 PF13188 PAS domain D5400_14375 PF00990 Diguanylate cyclase, GGDEF domain D5400_14375 PF03707 Bacterial signalling protein N terminal repeat D5400_14385 PF03652 Holliday junction resolvase D5400_14405 PF18158 Adaptive response protein AidB N-terminal domain D5400_14405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D5400_14405 PF02770 Acyl-CoA dehydrogenase, middle domain D5400_14410 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D5400_14410 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D5400_14415 PF01979 Amidohydrolase family D5400_14420 PF02660 Glycerol-3-phosphate acyltransferase D5400_14425 PF02481 DNA recombination-mediator protein A D5400_14425 PF17782 DprA winged helix domain D5400_14435 PF01131 DNA topoisomerase D5400_14435 PF13368 Topoisomerase C-terminal repeat D5400_14435 PF01396 Topoisomerase DNA binding C4 zinc finger D5400_14435 PF01751 Toprim domain D5400_14440 PF00575 S1 RNA binding domain D5400_14440 PF08461 Ribonuclease R winged-helix domain D5400_14440 PF00773 RNB domain D5400_14440 PF08206 Ribonuclease B OB domain D5400_14440 PF17876 Cold shock domain D5400_14460 PF00471 Ribosomal protein L33 D5400_14465 PF00990 Diguanylate cyclase, GGDEF domain D5400_14465 PF00072 Response regulator receiver domain D5400_14470 PF00072 Response regulator receiver domain D5400_14485 PF11799 impB/mucB/samB family C-terminal domain D5400_14485 PF00817 impB/mucB/samB family D5400_14500 PF00005 ABC transporter D5400_14505 PF02687 FtsX-like permease family D5400_14505 PF12704 MacB-like periplasmic core domain D5400_14510 PF03129 Anticodon binding domain D5400_14510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D5400_14525 PF12706 Beta-lactamase superfamily domain D5400_14525 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D5400_14525 PF17770 Ribonuclease J C-terminal domain D5400_14535 PF00361 Proton-conducting membrane transporter D5400_14540 PF00361 Proton-conducting membrane transporter D5400_14545 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D5400_14545 PF00361 Proton-conducting membrane transporter D5400_14550 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D5400_14555 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 D5400_14560 PF12838 4Fe-4S dicluster domain D5400_14565 PF00146 NADH dehydrogenase D5400_14570 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal D5400_14570 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D5400_14570 PF00384 Molybdopterin oxidoreductase D5400_14580 PF10531 SLBB domain D5400_14580 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D5400_14580 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D5400_14595 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D5400_14600 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D5400_14605 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D5400_14610 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 D5400_14635 PF13183 4Fe-4S dicluster domain D5400_14635 PF02754 Cysteine-rich domain D5400_14645 PF01565 FAD binding domain D5400_14650 PF01565 FAD binding domain D5400_14650 PF02913 FAD linked oxidases, C-terminal domain D5400_14655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_14655 PF03466 LysR substrate binding domain D5400_14665 PF00392 Bacterial regulatory proteins, gntR family D5400_14665 PF07729 FCD domain D5400_14670 PF02754 Cysteine-rich domain D5400_14675 PF13183 4Fe-4S dicluster domain D5400_14675 PF11870 Domain of unknown function (DUF3390) D5400_14675 PF02589 LUD domain D5400_14680 PF02589 LUD domain D5400_14695 PF04452 RNA methyltransferase D5400_14700 PF04107 Glutamate-cysteine ligase family 2(GCS2) D5400_14715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_14715 PF03466 LysR substrate binding domain D5400_14720 PF02601 Exonuclease VII, large subunit D5400_14720 PF13742 OB-fold nucleic acid binding domain D5400_14725 PF05661 Protein of unknown function (DUF808) D5400_14735 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D5400_14735 PF13378 Enolase C-terminal domain-like D5400_14740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D5400_14745 PF00528 Binding-protein-dependent transport system inner membrane component D5400_14750 PF00528 Binding-protein-dependent transport system inner membrane component D5400_14750 PF12911 N-terminal TM domain of oligopeptide transport permease C D5400_14755 PF00005 ABC transporter D5400_14755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D5400_14760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D5400_14760 PF00005 ABC transporter D5400_14765 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain D5400_14770 PF01546 Peptidase family M20/M25/M40 D5400_14775 PF00216 Bacterial DNA-binding protein D5400_14780 PF05362 Lon protease (S16) C-terminal proteolytic domain D5400_14780 PF02190 ATP-dependent protease La (LON) substrate-binding domain D5400_14780 PF00004 ATPase family associated with various cellular activities (AAA) D5400_14785 PF06689 ClpX C4-type zinc finger D5400_14785 PF07724 AAA domain (Cdc48 subfamily) D5400_14785 PF10431 C-terminal, D2-small domain, of ClpB protein D5400_14790 PF00574 Clp protease D5400_14795 PF01266 FAD dependent oxidoreductase D5400_14800 PF00067 Cytochrome P450 D5400_14810 PF01053 Cys/Met metabolism PLP-dependent enzyme D5400_14815 PF13380 CoA binding domain D5400_14820 PF07729 FCD domain D5400_14820 PF00392 Bacterial regulatory proteins, gntR family D5400_14825 PF00528 Binding-protein-dependent transport system inner membrane component D5400_14830 PF00005 ABC transporter D5400_14835 PF09084 NMT1/THI5 like D5400_14840 PF01557 Fumarylacetoacetate (FAA) hydrolase family D5400_14845 PF03737 Aldolase/RraA D5400_14850 PF00378 Enoyl-CoA hydratase/isomerase D5400_14860 PF00572 Ribosomal protein L13 D5400_14865 PF00380 Ribosomal protein S9/S16 D5400_14870 PF00491 Arginase family D5400_14875 PF01118 Semialdehyde dehydrogenase, NAD binding domain D5400_14880 PF02628 Cytochrome oxidase assembly protein D5400_14910 PF02397 Bacterial sugar transferase D5400_14925 PF00248 Aldo/keto reductase family D5400_14940 PF13411 MerR HTH family regulatory protein D5400_14945 PF00216 Bacterial DNA-binding protein D5400_14950 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D5400_14950 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D5400_14955 PF02504 Fatty acid synthesis protein D5400_14975 PF03030 Inorganic H+ pyrophosphatase D5400_14980 PF07690 Major Facilitator Superfamily D5400_14985 PF01029 NusB family D5400_14990 PF00885 6,7-dimethyl-8-ribityllumazine synthase D5400_14995 PF00677 Lumazine binding domain D5400_15000 PF01872 RibD C-terminal domain D5400_15000 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D5400_15005 PF03477 ATP cone domain D5400_15010 PF00464 Serine hydroxymethyltransferase D5400_15015 PF12833 Helix-turn-helix domain D5400_15030 PF03734 L,D-transpeptidase catalytic domain D5400_15030 PF01471 Putative peptidoglycan binding domain D5400_15045 PF00490 Delta-aminolevulinic acid dehydratase D5400_15055 PF04376 Arginine-tRNA-protein transferase, N terminus D5400_15055 PF04377 Arginine-tRNA-protein transferase, C terminus D5400_15060 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme D5400_15065 PF00521 DNA gyrase/topoisomerase IV, subunit A D5400_15065 PF03989 DNA gyrase C-terminal domain, beta-propeller D5400_15075 PF01470 Pyroglutamyl peptidase D5400_15080 PF01336 OB-fold nucleic acid binding domain D5400_15080 PF00152 tRNA synthetases class II (D, K and N) D5400_15080 PF02938 GAD domain D5400_15085 PF00570 HRDC domain D5400_15085 PF01612 3'-5' exonuclease D5400_15100 PF02503 Polyphosphate kinase middle domain D5400_15100 PF13090 Polyphosphate kinase C-terminal domain 2 D5400_15100 PF17941 Polyphosphate kinase C-terminal domain 1 D5400_15100 PF13089 Polyphosphate kinase N-terminal domain D5400_15110 PF01594 AI-2E family transporter D5400_15115 PF01066 CDP-alcohol phosphatidyltransferase D5400_15120 PF02769 AIR synthase related protein, C-terminal domain D5400_15120 PF00586 AIR synthase related protein, N-terminal domain D5400_15125 PF00551 Formyl transferase D5400_15130 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D5400_15130 PF00384 Molybdopterin oxidoreductase D5400_15130 PF01568 Molydopterin dinucleotide binding domain D5400_15135 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ D5400_15145 PF00445 Ribonuclease T2 family D5400_15150 PF00043 Glutathione S-transferase, C-terminal domain D5400_15150 PF13417 Glutathione S-transferase, N-terminal domain D5400_15155 PF13505 Outer membrane protein beta-barrel domain D5400_15165 PF08459 UvrC Helix-hairpin-helix N-terminal D5400_15165 PF02151 UvrB/uvrC motif D5400_15165 PF12826 Helix-hairpin-helix motif D5400_15165 PF01541 GIY-YIG catalytic domain D5400_15175 PF01066 CDP-alcohol phosphatidyltransferase D5400_15185 PF02391 MoaE protein D5400_15190 PF01507 Phosphoadenosine phosphosulfate reductase family D5400_15195 PF00334 Nucleoside diphosphate kinase D5400_15215 PF01544 CorA-like Mg2+ transporter protein D5400_15225 PF00883 Cytosol aminopeptidase family, catalytic domain D5400_15225 PF02789 Cytosol aminopeptidase family, N-terminal domain D5400_15240 PF03968 OstA-like protein D5400_15240 PF04453 LPS transport system D D5400_15250 PF04166 Pyridoxal phosphate biosynthetic protein PdxA D5400_15255 PF00398 Ribosomal RNA adenine dimethylase D5400_15260 PF00625 Guanylate kinase D5400_15265 PF08340 Domain of unknown function (DUF1732) D5400_15265 PF03755 YicC-like family, N-terminal region D5400_15270 PF02618 YceG-like family D5400_15275 PF02801 Beta-ketoacyl synthase, C-terminal domain D5400_15275 PF00109 Beta-ketoacyl synthase, N-terminal domain D5400_15280 PF00550 Phosphopantetheine attachment site D5400_15290 PF00698 Acyl transferase domain D5400_15300 PF01250 Ribosomal protein S6 D5400_15305 PF01084 Ribosomal protein S18 D5400_15315 PF03948 Ribosomal protein L9, C-terminal domain D5400_15315 PF01281 Ribosomal protein L9, N-terminal domain D5400_15325 PF00772 DnaB-like helicase N terminal domain D5400_15325 PF03796 DnaB-like helicase C terminal domain D5400_15330 PF00842 Alanine racemase, C-terminal domain D5400_15330 PF01168 Alanine racemase, N-terminal domain D5400_15345 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D5400_15350 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D5400_15360 PF06745 KaiC D5400_15360 PF18073 Rubredoxin metal binding domain D5400_15370 PF00156 Phosphoribosyl transferase domain D5400_15370 PF13537 Glutamine amidotransferase domain D5400_15375 PF00106 short chain dehydrogenase D5400_15380 PF01066 CDP-alcohol phosphatidyltransferase D5400_15385 PF02666 Phosphatidylserine decarboxylase D5400_15390 PF00664 ABC transporter transmembrane region D5400_15390 PF00005 ABC transporter D5400_15405 PF03641 Possible lysine decarboxylase D5400_15410 PF00795 Carbon-nitrogen hydrolase D5400_15410 PF00583 Acetyltransferase (GNAT) family D5400_15420 PF00892 EamA-like transporter family D5400_15425 PF08502 LeuA allosteric (dimerisation) domain D5400_15425 PF00682 HMGL-like D5400_15435 PF00561 alpha/beta hydrolase fold D5400_15445 PF01406 tRNA synthetases class I (C) catalytic domain D5400_15470 PF00293 NUDIX domain D5400_15485 PF01571 Aminomethyltransferase folate-binding domain D5400_15490 PF01966 HD domain D5400_15510 PF04542 Sigma-70 region 2 D5400_15510 PF08281 Sigma-70, region 4 D5400_15520 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D5400_15520 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D5400_15525 PF02910 Fumarate reductase flavoprotein C-term D5400_15525 PF00890 FAD binding domain D5400_15530 PF01476 LysM domain D5400_15530 PF01510 N-acetylmuramoyl-L-alanine amidase D5400_15530 PF01471 Putative peptidoglycan binding domain D5400_15535 PF02445 Quinolinate synthetase A protein D5400_15555 PF02565 Recombination protein O C terminal D5400_15555 PF11967 Recombination protein O N terminal D5400_15560 PF07650 KH domain D5400_15560 PF01926 50S ribosome-binding GTPase D5400_15565 PF00035 Double-stranded RNA binding motif D5400_15565 PF14622 Ribonuclease-III-like D5400_15570 PF10502 Signal peptidase, peptidase S26 D5400_15575 PF01648 4'-phosphopantetheinyl transferase superfamily D5400_15585 PF13291 ACT domain D5400_15585 PF02824 TGS domain D5400_15585 PF04607 Region found in RelA / SpoT proteins D5400_15590 PF01192 RNA polymerase Rpb6 D5400_15600 PF03167 Uracil DNA glycosylase superfamily D5400_15615 PF01668 SmpB protein D5400_15620 PF00701 Dihydrodipicolinate synthetase family D5400_15625 PF01464 Transglycosylase SLT domain D5400_15625 PF14718 Soluble lytic murein transglycosylase L domain D5400_15635 PF02530 Porin subfamily D5400_15640 PF01380 SIS domain D5400_15645 PF00132 Bacterial transferase hexapeptide (six repeats) D5400_15645 PF12804 MobA-like NTP transferase domain D5400_15650 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D5400_15670 PF01618 MotA/TolQ/ExbB proton channel family D5400_15690 PF00664 ABC transporter transmembrane region D5400_15690 PF00005 ABC transporter D5400_15695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_15695 PF00512 His Kinase A (phospho-acceptor) domain D5400_15695 PF02743 Cache domain D5400_15700 PF00072 Response regulator receiver domain D5400_15700 PF00158 Sigma-54 interaction domain D5400_15700 PF02954 Bacterial regulatory protein, Fis family D5400_15705 PF03401 Tripartite tricarboxylate transporter family receptor D5400_15710 PF07331 Tripartite tricarboxylate transporter TctB family D5400_15715 PF01970 Tripartite tricarboxylate transporter TctA family D5400_15725 PF00155 Aminotransferase class I and II D5400_15730 PF08659 KR domain D5400_15730 PF02801 Beta-ketoacyl synthase, C-terminal domain D5400_15730 PF00109 Beta-ketoacyl synthase, N-terminal domain D5400_15730 PF00550 Phosphopantetheine attachment site D5400_15730 PF00698 Acyl transferase domain D5400_15730 PF08240 Alcohol dehydrogenase GroES-like domain D5400_15730 PF08990 Erythronolide synthase docking D5400_15730 PF14765 Polyketide synthase dehydratase D5400_15730 PF09277 Erythronolide synthase, docking D5400_15730 PF16197 Ketoacyl-synthetase C-terminal extension D5400_15735 PF00483 Nucleotidyl transferase D5400_15740 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D5400_15745 PF16363 GDP-mannose 4,6 dehydratase D5400_15750 PF04321 RmlD substrate binding domain D5400_15775 PF00005 ABC transporter D5400_15790 PF00535 Glycosyl transferase family 2 D5400_15800 PF00106 short chain dehydrogenase D5400_15810 PF05159 Capsule polysaccharide biosynthesis protein D5400_15830 PF01555 DNA methylase D5400_15890 PF04851 Type III restriction enzyme, res subunit D5400_15890 PF00271 Helicase conserved C-terminal domain D5400_15925 PF02195 ParB-like nuclease domain D5400_16055 PF01740 STAS domain D5400_16055 PF00916 Sulfate permease family D5400_16065 PF04143 Sulphur transport D5400_16075 PF04273 Putative phosphatase (DUF442) D5400_16075 PF00753 Metallo-beta-lactamase superfamily D5400_16080 PF00753 Metallo-beta-lactamase superfamily D5400_16080 PF04273 Putative phosphatase (DUF442) D5400_16090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_16090 PF08521 Two-component sensor kinase N-terminal D5400_16090 PF00512 His Kinase A (phospho-acceptor) domain D5400_16095 PF00486 Transcriptional regulatory protein, C terminal D5400_16095 PF00072 Response regulator receiver domain D5400_16100 PF17969 L,D-transpeptidase C-terminal domain D5400_16100 PF03734 L,D-transpeptidase catalytic domain D5400_16105 PF11412 Disulphide bond corrector protein DsbC D5400_16105 PF02683 Cytochrome C biogenesis protein transmembrane region D5400_16110 PF00578 AhpC/TSA family D5400_16140 PF00528 Binding-protein-dependent transport system inner membrane component D5400_16145 PF00005 ABC transporter D5400_16150 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5400_16155 PF09383 NIL domain D5400_16155 PF00005 ABC transporter D5400_16160 PF00528 Binding-protein-dependent transport system inner membrane component D5400_16165 PF03180 NLPA lipoprotein D5400_16170 PF03358 NADPH-dependent FMN reductase D5400_16180 PF00296 Luciferase-like monooxygenase D5400_16190 PF00005 ABC transporter D5400_16195 PF00528 Binding-protein-dependent transport system inner membrane component D5400_16200 PF03358 NADPH-dependent FMN reductase D5400_16205 PF02082 Transcriptional regulator D5400_16215 PF01757 Acyltransferase family D5400_16220 PF00149 Calcineurin-like phosphoesterase D5400_16225 PF02706 Chain length determinant protein D5400_16225 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D5400_16225 PF13807 G-rich domain on putative tyrosine kinase D5400_16230 PF00483 Nucleotidyl transferase D5400_16235 PF00535 Glycosyl transferase family 2 D5400_16240 PF00535 Glycosyl transferase family 2 D5400_16245 PF00535 Glycosyl transferase family 2 D5400_16255 PF00722 Glycosyl hydrolases family 16 D5400_16260 PF01943 Polysaccharide biosynthesis protein D5400_16265 PF00535 Glycosyl transferase family 2 D5400_16270 PF04230 Polysaccharide pyruvyl transferase D5400_16275 PF00535 Glycosyl transferase family 2 D5400_16280 PF11089 Exopolysaccharide production repressor D5400_16285 PF02397 Bacterial sugar transferase D5400_16290 PF02563 Polysaccharide biosynthesis/export protein D5400_16330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_16330 PF03466 LysR substrate binding domain D5400_16340 PF07238 PilZ domain D5400_16340 PF00535 Glycosyl transferase family 2 D5400_16350 PF01270 Glycosyl hydrolases family 8 D5400_16365 PF13419 Haloacid dehalogenase-like hydrolase D5400_16380 PF08448 PAS fold D5400_16380 PF00990 Diguanylate cyclase, GGDEF domain D5400_16385 PF01032 FecCD transport family D5400_16395 PF00005 ABC transporter D5400_16400 PF07715 TonB-dependent Receptor Plug Domain D5400_16400 PF00593 TonB dependent receptor D5400_16405 PF03547 Membrane transport protein D5400_16410 PF09335 SNARE associated Golgi protein D5400_16415 PF00155 Aminotransferase class I and II D5400_16435 PF02798 Glutathione S-transferase, N-terminal domain D5400_16435 PF00043 Glutathione S-transferase, C-terminal domain D5400_16440 PF01594 AI-2E family transporter D5400_16445 PF00672 HAMP domain D5400_16445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5400_16450 PF01048 Phosphorylase superfamily D5400_16450 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus D5400_16455 PF00781 Diacylglycerol kinase catalytic domain D5400_16475 PF03167 Uracil DNA glycosylase superfamily D5400_16485 PF13426 PAS domain D5400_16485 PF07568 Histidine kinase D5400_16485 PF13581 Histidine kinase-like ATPase domain D5400_16490 PF00571 CBS domain D5400_16490 PF00478 IMP dehydrogenase / GMP reductase domain D5400_16500 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D5400_16500 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D5400_16505 PF01433 Peptidase family M1 domain D5400_16505 PF11940 Domain of unknown function (DUF3458) Ig-like fold D5400_16505 PF17432 Domain of unknown function (DUF3458_C) ARM repeats D5400_16510 PF00512 His Kinase A (phospho-acceptor) domain D5400_16510 PF00989 PAS fold D5400_16510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_16520 PF08335 GlnD PII-uridylyltransferase D5400_16520 PF03710 Glutamate-ammonia ligase adenylyltransferase D5400_16525 PF00672 HAMP domain D5400_16525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_16525 PF00512 His Kinase A (phospho-acceptor) domain D5400_16530 PF00072 Response regulator receiver domain D5400_16530 PF00486 Transcriptional regulatory protein, C terminal D5400_16535 PF13180 PDZ domain D5400_16540 PF03918 Cytochrome C biogenesis protein D5400_16545 PF01578 Cytochrome C assembly protein D5400_16545 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D5400_16550 PF03100 CcmE D5400_16565 PF08521 Two-component sensor kinase N-terminal D5400_16565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_16565 PF00512 His Kinase A (phospho-acceptor) domain D5400_16570 PF00072 Response regulator receiver domain D5400_16570 PF00486 Transcriptional regulatory protein, C terminal D5400_16610 PF03692 Putative zinc- or iron-chelating domain D5400_16615 PF00905 Penicillin binding protein transpeptidase domain D5400_16615 PF00912 Transglycosylase D5400_16645 PF00512 His Kinase A (phospho-acceptor) domain D5400_16645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_16650 PF17264 Family of unknown function (DUF5330) D5400_16655 PF02657 Fe-S metabolism associated domain D5400_16670 PF05443 ROS/MUCR transcriptional regulator protein D5400_16675 PF03334 Na+/H+ antiporter subunit D5400_16680 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D5400_16695 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D5400_16710 PF01641 SelR domain D5400_16715 PF00326 Prolyl oligopeptidase family D5400_16715 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain D5400_16725 PF00034 Cytochrome c D5400_16735 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D5400_16735 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D5400_16740 PF01063 Amino-transferase class IV D5400_16750 PF03734 L,D-transpeptidase catalytic domain D5400_16750 PF17969 L,D-transpeptidase C-terminal domain D5400_16755 PF05872 Bacterial protein of unknown function (DUF853) D5400_16765 PF01642 Methylmalonyl-CoA mutase D5400_16770 PF01642 Methylmalonyl-CoA mutase D5400_16770 PF02310 B12 binding domain D5400_16785 PF05974 Domain of unknown function (DUF892) D5400_16810 PF10609 NUBPL iron-transfer P-loop NTPase D5400_16820 PF00528 Binding-protein-dependent transport system inner membrane component D5400_16825 PF00005 ABC transporter D5400_16825 PF08402 TOBE domain D5400_16830 PF13416 Bacterial extracellular solute-binding protein D5400_16835 PF13426 PAS domain D5400_16835 PF00072 Response regulator receiver domain D5400_16835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_17010 PF04860 Phage portal protein D5400_17055 PF00145 C-5 cytosine-specific DNA methylase D5400_17070 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) D5400_17140 PF00589 Phage integrase family D5400_17140 PF02899 Phage integrase, N-terminal SAM-like domain D5400_17145 PF01575 MaoC like domain D5400_17155 PF03734 L,D-transpeptidase catalytic domain D5400_17155 PF17969 L,D-transpeptidase C-terminal domain D5400_17160 PF00009 Elongation factor Tu GTP binding domain D5400_17165 PF01507 Phosphoadenosine phosphosulfate reductase family D5400_17170 PF02632 BioY family D5400_17200 PF00391 PEP-utilising enzyme, mobile domain D5400_17200 PF02896 PEP-utilising enzyme, TIM barrel domain D5400_17200 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D5400_17210 PF02463 RecF/RecN/SMC N terminal domain D5400_17215 PF13462 Thioredoxin D5400_17215 PF06965 Na+/H+ antiporter 1 D5400_17225 PF00730 HhH-GPD superfamily base excision DNA repair protein D5400_17225 PF14815 NUDIX domain D5400_17235 PF01555 DNA methylase D5400_17235 PF18755 Restriction Enzyme Adenine Methylase Associated D5400_17240 PF13419 Haloacid dehalogenase-like hydrolase D5400_17250 PF14821 Threonine synthase N terminus D5400_17250 PF00291 Pyridoxal-phosphate dependent enzyme D5400_17255 PF05193 Peptidase M16 inactive domain D5400_17255 PF00675 Insulinase (Peptidase family M16) D5400_17260 PF13302 Acetyltransferase (GNAT) domain D5400_17265 PF03707 Bacterial signalling protein N terminal repeat D5400_17265 PF00990 Diguanylate cyclase, GGDEF domain D5400_17265 PF00563 EAL domain D5400_17265 PF13188 PAS domain D5400_17270 PF02622 Uncharacterized ACR, COG1678 D5400_17280 PF08534 Redoxin D5400_17280 PF00462 Glutaredoxin D5400_17285 PF00075 RNase H D5400_17290 PF01636 Phosphotransferase enzyme family D5400_17295 PF02401 LytB protein D5400_17300 PF02104 SURF1 family D5400_17310 PF00510 Cytochrome c oxidase subunit III D5400_17315 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 D5400_17320 PF01040 UbiA prenyltransferase family D5400_17325 PF00115 Cytochrome C and Quinol oxidase polypeptide I D5400_17330 PF02790 Cytochrome C oxidase subunit II, transmembrane domain D5400_17330 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D5400_17340 PF01523 Putative modulator of DNA gyrase D5400_17345 PF02146 Sir2 family D5400_17355 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D5400_17355 PF01243 Pyridoxamine 5'-phosphate oxidase D5400_17365 PF00226 DnaJ domain D5400_17365 PF01556 DnaJ C terminal domain D5400_17365 PF00684 DnaJ central domain D5400_17375 PF00300 Histidine phosphatase superfamily (branch 1) D5400_17380 PF01264 Chorismate synthase D5400_17390 PF00850 Histone deacetylase domain D5400_17395 PF02609 Exonuclease VII small subunit D5400_17400 PF03707 Bacterial signalling protein N terminal repeat D5400_17400 PF00990 Diguanylate cyclase, GGDEF domain D5400_17400 PF00563 EAL domain D5400_17400 PF13188 PAS domain D5400_17405 PF02779 Transketolase, pyrimidine binding domain D5400_17405 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D5400_17405 PF02780 Transketolase, C-terminal domain D5400_17415 PF01728 FtsJ-like methyltransferase D5400_17415 PF01479 S4 domain D5400_17420 PF05958 tRNA (Uracil-5-)-methyltransferase D5400_17425 PF00378 Enoyl-CoA hydratase/isomerase D5400_17430 PF02770 Acyl-CoA dehydrogenase, middle domain D5400_17430 PF12806 Acetyl-CoA dehydrogenase C-terminal like D5400_17430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D5400_17430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D5400_17435 PF03481 Putative GTP-binding controlling metal-binding D5400_17435 PF01300 Telomere recombination D5400_17440 PF01565 FAD binding domain D5400_17440 PF02913 FAD linked oxidases, C-terminal domain D5400_17455 PF01040 UbiA prenyltransferase family D5400_17460 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D5400_17460 PF02843 Phosphoribosylglycinamide synthetase, C domain D5400_17460 PF02844 Phosphoribosylglycinamide synthetase, N domain D5400_17470 PF08000 Bacterial PH domain D5400_17475 PF05746 DALR anticodon binding domain D5400_17475 PF02092 Glycyl-tRNA synthetase beta subunit D5400_17480 PF02091 Glycyl-tRNA synthetase alpha subunit D5400_17490 PF06965 Na+/H+ antiporter 1 D5400_17490 PF01343 Peptidase family S49 D5400_17505 PF00348 Polyprenyl synthetase D5400_17515 PF08544 GHMP kinases C terminal D5400_17515 PF00288 GHMP kinases N terminal domain D5400_17520 PF00994 Probable molybdopterin binding domain D5400_17530 PF04055 Radical SAM superfamily D5400_17535 PF01351 Ribonuclease HII D5400_17540 PF00430 ATP synthase B/B' CF(0) D5400_17545 PF00430 ATP synthase B/B' CF(0) D5400_17550 PF00137 ATP synthase subunit C D5400_17555 PF00119 ATP synthase A chain D5400_17560 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter D5400_17570 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D5400_17570 PF01926 50S ribosome-binding GTPase D5400_17585 PF05992 SbmA/BacA-like family D5400_17590 PF06779 Uncharacterised MFS-type transporter YbfB D5400_17595 PF16363 GDP-mannose 4,6 dehydratase D5400_17610 PF03741 Integral membrane protein TerC family D5400_17615 PF00403 Heavy-metal-associated domain D5400_17630 PF09278 MerR, DNA binding D5400_17630 PF00376 MerR family regulatory protein D5400_17635 PF13545 Crp-like helix-turn-helix domain D5400_17635 PF00027 Cyclic nucleotide-binding domain D5400_17645 PF00196 Bacterial regulatory proteins, luxR family D5400_17645 PF00072 Response regulator receiver domain D5400_17650 PF00512 His Kinase A (phospho-acceptor) domain D5400_17650 PF00989 PAS fold D5400_17650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_17655 PF02540 NAD synthase D5400_17655 PF00117 Glutamine amidotransferase class-I D5400_17655 PF00958 GMP synthase C terminal domain D5400_17675 PF01189 16S rRNA methyltransferase RsmB/F D5400_17675 PF01029 NusB family D5400_17685 PF00478 IMP dehydrogenase / GMP reductase domain D5400_17685 PF00571 CBS domain D5400_17690 PF00753 Metallo-beta-lactamase superfamily D5400_17695 PF01728 FtsJ-like methyltransferase D5400_17700 PF02541 Ppx/GppA phosphatase family D5400_17720 PF00580 UvrD/REP helicase N-terminal domain D5400_17720 PF13361 UvrD-like helicase C-terminal domain D5400_17730 PF00990 Diguanylate cyclase, GGDEF domain D5400_17730 PF07694 5TMR of 5TMR-LYT D5400_17740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_17740 PF13426 PAS domain D5400_17740 PF00072 Response regulator receiver domain D5400_17770 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_17780 PF03480 Bacterial extracellular solute-binding protein, family 7 D5400_17785 PF05378 Hydantoinase/oxoprolinase N-terminal region D5400_17785 PF01968 Hydantoinase/oxoprolinase D5400_17800 PF01370 NAD dependent epimerase/dehydratase family D5400_17805 PF12680 SnoaL-like domain D5400_17810 PF16859 Tetracyclin repressor-like, C-terminal domain D5400_17810 PF00440 Bacterial regulatory proteins, tetR family D5400_17820 PF00106 short chain dehydrogenase D5400_17830 PF03466 LysR substrate binding domain D5400_17830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_17835 PF02525 Flavodoxin-like fold D5400_17845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_17845 PF03466 LysR substrate binding domain D5400_17850 PF00106 short chain dehydrogenase D5400_17860 PF00440 Bacterial regulatory proteins, tetR family D5400_17865 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain D5400_17865 PF00326 Prolyl oligopeptidase family D5400_17870 PF00072 Response regulator receiver domain D5400_17870 PF00486 Transcriptional regulatory protein, C terminal D5400_17875 PF00512 His Kinase A (phospho-acceptor) domain D5400_17875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_17875 PF08521 Two-component sensor kinase N-terminal D5400_17885 PF13026 Protein of unknown function (DUF3887) D5400_17885 PF12146 Serine aminopeptidase, S33 D5400_17890 PF00392 Bacterial regulatory proteins, gntR family D5400_17890 PF07729 FCD domain D5400_17895 PF03480 Bacterial extracellular solute-binding protein, family 7 D5400_17905 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_17915 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain D5400_17915 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain D5400_17920 PF07005 Sugar-binding N-terminal domain D5400_17920 PF17042 Nucleotide-binding C-terminal domain D5400_17935 PF00106 short chain dehydrogenase D5400_17940 PF03597 Cytochrome oxidase maturation protein cbb3-type D5400_17950 PF05751 FixH D5400_17955 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase D5400_17955 PF12801 4Fe-4S binding domain D5400_17955 PF13746 4Fe-4S dicluster domain D5400_17960 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP D5400_17960 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5400_17975 PF00115 Cytochrome C and Quinol oxidase polypeptide I D5400_17995 PF03814 Potassium-transporting ATPase A subunit D5400_18005 PF02669 K+-transporting ATPase, c chain D5400_18010 PF13493 Domain of unknown function (DUF4118) D5400_18010 PF02702 Osmosensitive K+ channel His kinase sensor domain D5400_18010 PF00512 His Kinase A (phospho-acceptor) domain D5400_18010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_18010 PF13492 GAF domain D5400_18015 PF00072 Response regulator receiver domain D5400_18015 PF00486 Transcriptional regulatory protein, C terminal D5400_18020 PF02423 Ornithine cyclodeaminase/mu-crystallin family D5400_18025 PF00491 Arginase family D5400_18030 PF01037 Lrp/AsnC ligand binding domain D5400_18040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_18040 PF03466 LysR substrate binding domain D5400_18045 PF02423 Ornithine cyclodeaminase/mu-crystallin family D5400_18050 PF00528 Binding-protein-dependent transport system inner membrane component D5400_18055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D5400_18055 PF00005 ABC transporter D5400_18060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D5400_18060 PF00005 ABC transporter D5400_18075 PF02633 Creatinine amidohydrolase D5400_18095 PF03033 Glycosyltransferase family 28 N-terminal domain D5400_18095 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase D5400_18105 PF01590 GAF domain D5400_18105 PF00158 Sigma-54 interaction domain D5400_18110 PF00005 ABC transporter D5400_18115 PF00528 Binding-protein-dependent transport system inner membrane component D5400_18120 PF00005 ABC transporter D5400_18125 PF02560 Cyanate lyase C-terminal domain D5400_18145 PF00378 Enoyl-CoA hydratase/isomerase D5400_18150 PF00501 AMP-binding enzyme D5400_18150 PF13193 AMP-binding enzyme C-terminal domain D5400_18155 PF01799 [2Fe-2S] binding domain D5400_18155 PF00111 2Fe-2S iron-sulfur cluster binding domain D5400_18160 PF00941 FAD binding domain in molybdopterin dehydrogenase D5400_18160 PF03450 CO dehydrogenase flavoprotein C-terminal domain D5400_18165 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D5400_18165 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D5400_18175 PF00356 Bacterial regulatory proteins, lacI family D5400_18180 PF00005 ABC transporter D5400_18185 PF13407 Periplasmic binding protein domain D5400_18190 PF02653 Branched-chain amino acid transport system / permease component D5400_18195 PF02653 Branched-chain amino acid transport system / permease component D5400_18200 PF00294 pfkB family carbohydrate kinase D5400_18210 PF01380 SIS domain D5400_18225 PF00586 AIR synthase related protein, N-terminal domain D5400_18225 PF02769 AIR synthase related protein, C-terminal domain D5400_18235 PF06968 Biotin and Thiamin Synthesis associated domain D5400_18235 PF04055 Radical SAM superfamily D5400_18240 PF00795 Carbon-nitrogen hydrolase D5400_18250 PF00392 Bacterial regulatory proteins, gntR family D5400_18250 PF00155 Aminotransferase class I and II D5400_18270 PF12951 Passenger-associated-transport-repeat D5400_18270 PF00082 Subtilase family D5400_18270 PF03797 Autotransporter beta-domain D5400_18275 PF12833 Helix-turn-helix domain D5400_18280 PF03734 L,D-transpeptidase catalytic domain D5400_18285 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5400_18290 PF00528 Binding-protein-dependent transport system inner membrane component D5400_18295 PF00005 ABC transporter D5400_18300 PF00196 Bacterial regulatory proteins, luxR family D5400_18315 PF03372 Endonuclease/Exonuclease/phosphatase family D5400_18330 PF00072 Response regulator receiver domain D5400_18330 PF00196 Bacterial regulatory proteins, luxR family D5400_18345 PF00248 Aldo/keto reductase family D5400_18355 PF02733 Dak1 domain D5400_18360 PF02653 Branched-chain amino acid transport system / permease component D5400_18365 PF00005 ABC transporter D5400_18370 PF13407 Periplasmic binding protein domain D5400_18375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D5400_18375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D5400_18380 PF05343 M42 glutamyl aminopeptidase D5400_18385 PF02653 Branched-chain amino acid transport system / permease component D5400_18390 PF03437 BtpA family D5400_18395 PF08220 DeoR-like helix-turn-helix domain D5400_18395 PF00455 DeoR C terminal sensor domain D5400_18400 PF07729 FCD domain D5400_18400 PF00392 Bacterial regulatory proteins, gntR family D5400_18405 PF03480 Bacterial extracellular solute-binding protein, family 7 D5400_18415 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_18415 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D5400_18420 PF02502 Ribose/Galactose Isomerase D5400_18475 PF00313 'Cold-shock' DNA-binding domain D5400_18485 PF03449 Transcription elongation factor, N-terminal D5400_18485 PF01272 Transcription elongation factor, GreA/GreB, C-term D5400_18490 PF02469 Fasciclin domain D5400_18500 PF00005 ABC transporter D5400_18505 PF00005 ABC transporter D5400_18505 PF12399 Branched-chain amino acid ATP-binding cassette transporter D5400_18515 PF02653 Branched-chain amino acid transport system / permease component D5400_18540 PF00171 Aldehyde dehydrogenase family D5400_18550 PF04444 Catechol dioxygenase N terminus D5400_18550 PF00775 Dioxygenase D5400_18570 PF00005 ABC transporter D5400_18575 PF00005 ABC transporter D5400_18585 PF00465 Iron-containing alcohol dehydrogenase D5400_18595 PF07886 BA14K-like protein D5400_18605 PF01593 Flavin containing amine oxidoreductase D5400_18610 PF02803 Thiolase, C-terminal domain D5400_18610 PF00108 Thiolase, N-terminal domain D5400_18615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D5400_18615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D5400_18625 PF01425 Amidase D5400_18630 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_18640 PF03480 Bacterial extracellular solute-binding protein, family 7 D5400_18650 PF01292 Prokaryotic cytochrome b561 D5400_18655 PF13247 4Fe-4S dicluster domain D5400_18660 PF01568 Molydopterin dinucleotide binding domain D5400_18660 PF00384 Molybdopterin oxidoreductase D5400_18660 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D5400_18705 PF00034 Cytochrome c D5400_18710 PF00196 Bacterial regulatory proteins, luxR family D5400_18715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_18715 PF07730 Histidine kinase D5400_18740 PF00005 ABC transporter D5400_18755 PF01758 Sodium Bile acid symporter family D5400_18760 PF00082 Subtilase family D5400_18765 PF08281 Sigma-70, region 4 D5400_18765 PF04542 Sigma-70 region 2 D5400_18775 PF08241 Methyltransferase domain D5400_18780 PF01980 tRNA-methyltransferase O D5400_18790 PF10397 Adenylosuccinate lyase C-terminus D5400_18790 PF00206 Lyase D5400_18795 PF02803 Thiolase, C-terminal domain D5400_18795 PF00108 Thiolase, N-terminal domain D5400_18800 PF01144 Coenzyme A transferase D5400_18805 PF01144 Coenzyme A transferase D5400_18810 PF00775 Dioxygenase D5400_18815 PF00775 Dioxygenase D5400_18815 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal D5400_18820 PF02627 Carboxymuconolactone decarboxylase family D5400_18825 PF12697 Alpha/beta hydrolase family D5400_18830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_18830 PF03466 LysR substrate binding domain D5400_18835 PF03472 Autoinducer binding domain D5400_18835 PF00196 Bacterial regulatory proteins, luxR family D5400_18840 PF00501 AMP-binding enzyme D5400_18840 PF13193 AMP-binding enzyme C-terminal domain D5400_18845 PF00892 EamA-like transporter family D5400_18850 PF00563 EAL domain D5400_18850 PF13188 PAS domain D5400_18850 PF03707 Bacterial signalling protein N terminal repeat D5400_18850 PF00990 Diguanylate cyclase, GGDEF domain D5400_18855 PF13660 Domain of unknown function (DUF4147) D5400_18855 PF05161 MOFRL family D5400_18860 PF00950 ABC 3 transport family D5400_18865 PF00950 ABC 3 transport family D5400_18870 PF00005 ABC transporter D5400_18875 PF01297 Zinc-uptake complex component A periplasmic D5400_18880 PF08676 MutL C terminal dimerisation domain D5400_18880 PF01119 DNA mismatch repair protein, C-terminal domain D5400_18890 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D5400_18895 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D5400_18910 PF00459 Inositol monophosphatase family D5400_18915 PF01523 Putative modulator of DNA gyrase D5400_18925 PF01734 Patatin-like phospholipase D5400_18935 PF01479 S4 domain D5400_18935 PF00849 RNA pseudouridylate synthase D5400_18940 PF14437 MafB19-like deaminase D5400_18950 PF08264 Anticodon-binding domain of tRNA D5400_18950 PF00133 tRNA synthetases class I (I, L, M and V) D5400_18955 PF01687 Riboflavin kinase D5400_18955 PF06574 FAD synthetase D5400_18965 PF00166 Chaperonin 10 Kd subunit D5400_18970 PF00118 TCP-1/cpn60 chaperonin family D5400_18975 PF01638 HxlR-like helix-turn-helix D5400_18985 PF01266 FAD dependent oxidoreductase D5400_18985 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D5400_18990 PF00990 Diguanylate cyclase, GGDEF domain D5400_18990 PF17158 Membrane-associated sensor, integral membrane domain D5400_18995 PF02798 Glutathione S-transferase, N-terminal domain D5400_18995 PF00043 Glutathione S-transferase, C-terminal domain D5400_19000 PF01925 Sulfite exporter TauE/SafE D5400_19005 PF10415 Fumarase C C-terminus D5400_19005 PF00206 Lyase D5400_19015 PF01634 ATP phosphoribosyltransferase D5400_19020 PF13393 Histidyl-tRNA synthetase D5400_19025 PF03129 Anticodon binding domain D5400_19025 PF13393 Histidyl-tRNA synthetase D5400_19045 PF03352 Methyladenine glycosylase D5400_19050 PF17969 L,D-transpeptidase C-terminal domain D5400_19050 PF03734 L,D-transpeptidase catalytic domain D5400_19055 PF01476 LysM domain D5400_19055 PF17969 L,D-transpeptidase C-terminal domain D5400_19055 PF03734 L,D-transpeptidase catalytic domain D5400_19080 PF00486 Transcriptional regulatory protein, C terminal D5400_19080 PF00072 Response regulator receiver domain D5400_19085 PF01627 Hpt domain D5400_19085 PF00072 Response regulator receiver domain D5400_19085 PF00486 Transcriptional regulatory protein, C terminal D5400_19090 PF10090 Histidine phosphotransferase C-terminal domain D5400_19105 PF00588 SpoU rRNA Methylase family D5400_19115 PF00849 RNA pseudouridylate synthase D5400_19120 PF04542 Sigma-70 region 2 D5400_19120 PF04545 Sigma-70, region 4 D5400_19120 PF00140 Sigma-70 factor, region 1.2 D5400_19130 PF01292 Prokaryotic cytochrome b561 D5400_19145 PF00709 Adenylosuccinate synthetase D5400_19160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5400_19160 PF00672 HAMP domain D5400_19170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D5400_19175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D5400_19175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D5400_19175 PF01842 ACT domain D5400_19180 PF00266 Aminotransferase class-V D5400_19210 PF13505 Outer membrane protein beta-barrel domain D5400_19215 PF02462 Opacity family porin protein D5400_19220 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D5400_19220 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D5400_19220 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D5400_19220 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D5400_19225 PF01434 Peptidase family M41 D5400_19225 PF06480 FtsH Extracellular D5400_19225 PF00004 ATPase family associated with various cellular activities (AAA) D5400_19225 PF17862 AAA+ lid domain D5400_19230 PF01171 PP-loop family D5400_19240 PF00691 OmpA family D5400_19245 PF07676 WD40-like Beta Propeller Repeat D5400_19245 PF04052 TolB amino-terminal domain D5400_19255 PF02472 Biopolymer transport protein ExbD/TolR D5400_19260 PF01618 MotA/TolQ/ExbB proton channel family D5400_19265 PF02386 Cation transport protein D5400_19270 PF03061 Thioesterase superfamily D5400_19285 PF01370 NAD dependent epimerase/dehydratase family D5400_19295 PF17864 RuvB AAA lid domain D5400_19295 PF05491 RuvB C-terminal winged helix domain D5400_19295 PF05496 Holliday junction DNA helicase RuvB P-loop domain D5400_19300 PF07499 RuvA, C-terminal domain D5400_19300 PF01330 RuvA N terminal domain D5400_19305 PF02075 Crossover junction endodeoxyribonuclease RuvC D5400_19310 PF00296 Luciferase-like monooxygenase D5400_19320 PF01709 Transcriptional regulator D5400_19340 PF03471 Transporter associated domain D5400_19340 PF03741 Integral membrane protein TerC family D5400_19345 PF13277 YmdB-like protein D5400_19375 PF00456 Transketolase, thiamine diphosphate binding domain D5400_19375 PF02780 Transketolase, C-terminal domain D5400_19375 PF02779 Transketolase, pyrimidine binding domain D5400_19380 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D5400_19380 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D5400_19385 PF02080 TrkA-C domain D5400_19385 PF00999 Sodium/hydrogen exchanger family D5400_19385 PF03471 Transporter associated domain D5400_19390 PF00162 Phosphoglycerate kinase D5400_19395 PF00274 Fructose-bisphosphate aldolase class-I D5400_19415 PF00444 Ribosomal protein L36 D5400_19420 PF02222 ATP-grasp domain D5400_19420 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D5400_19425 PF00731 AIR carboxylase D5400_19440 PF01022 Bacterial regulatory protein, arsR family D5400_19445 PF13193 AMP-binding enzyme C-terminal domain D5400_19445 PF00501 AMP-binding enzyme D5400_19465 PF08207 Elongation factor P (EF-P) KOW-like domain D5400_19465 PF09285 Elongation factor P, C-terminal D5400_19465 PF01132 Elongation factor P (EF-P) OB domain D5400_19470 PF00459 Inositol monophosphatase family D5400_19480 PF01389 OmpA-like transmembrane domain D5400_19480 PF00691 OmpA family D5400_19485 PF00005 ABC transporter D5400_19485 PF00664 ABC transporter transmembrane region D5400_19490 PF01197 Ribosomal protein L31 D5400_19505 PF16197 Ketoacyl-synthetase C-terminal extension D5400_19505 PF08240 Alcohol dehydrogenase GroES-like domain D5400_19505 PF00698 Acyl transferase domain D5400_19505 PF08659 KR domain D5400_19505 PF00550 Phosphopantetheine attachment site D5400_19505 PF14765 Polyketide synthase dehydratase D5400_19505 PF02801 Beta-ketoacyl synthase, C-terminal domain D5400_19505 PF00109 Beta-ketoacyl synthase, N-terminal domain D5400_19515 PF02887 Pyruvate kinase, alpha/beta domain D5400_19515 PF00224 Pyruvate kinase, barrel domain D5400_19530 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) D5400_19535 PF03350 Uncharacterized protein family, UPF0114 D5400_19545 PF02954 Bacterial regulatory protein, Fis family D5400_19545 PF00072 Response regulator receiver domain D5400_19545 PF00158 Sigma-54 interaction domain D5400_19560 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D5400_19570 PF03435 Saccharopine dehydrogenase NADP binding domain D5400_19570 PF16653 Saccharopine dehydrogenase C-terminal domain D5400_19580 PF02872 5'-nucleotidase, C-terminal domain D5400_19580 PF00149 Calcineurin-like phosphoesterase D5400_19585 PF00762 Ferrochelatase D5400_19590 PF00571 CBS domain D5400_19590 PF01380 SIS domain D5400_19600 PF00483 Nucleotidyl transferase D5400_19605 PF13406 Transglycosylase SLT domain D5400_19615 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5400_19615 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D5400_19620 PF04898 Glutamate synthase central domain D5400_19620 PF01645 Conserved region in glutamate synthase D5400_19620 PF01493 GXGXG motif D5400_19620 PF00310 Glutamine amidotransferases class-II D5400_19625 PF01212 Beta-eliminating lyase D5400_19635 PF00011 Hsp20/alpha crystallin family D5400_19640 PF12146 Serine aminopeptidase, S33 D5400_19645 PF00459 Inositol monophosphatase family D5400_19655 PF00072 Response regulator receiver domain D5400_19685 PF02653 Branched-chain amino acid transport system / permease component D5400_19690 PF02653 Branched-chain amino acid transport system / permease component D5400_19700 PF00005 ABC transporter D5400_19705 PF00005 ABC transporter D5400_19705 PF12399 Branched-chain amino acid ATP-binding cassette transporter D5400_19715 PF01575 MaoC like domain D5400_19725 PF08669 Glycine cleavage T-protein C-terminal barrel domain D5400_19725 PF01571 Aminomethyltransferase folate-binding domain D5400_19725 PF17806 Sarcosine oxidase A3 domain D5400_19725 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5400_19735 PF01266 FAD dependent oxidoreductase D5400_19740 PF01165 Ribosomal protein S21 D5400_19750 PF02233 NAD(P) transhydrogenase beta subunit D5400_19755 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D5400_19760 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D5400_19760 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D5400_19775 PF13188 PAS domain D5400_19775 PF03707 Bacterial signalling protein N terminal repeat D5400_19775 PF00990 Diguanylate cyclase, GGDEF domain D5400_19775 PF00563 EAL domain D5400_19790 PF03480 Bacterial extracellular solute-binding protein, family 7 D5400_19795 PF07722 Peptidase C26 D5400_19800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D5400_19800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D5400_19805 PF00356 Bacterial regulatory proteins, lacI family D5400_19815 PF02633 Creatinine amidohydrolase D5400_19825 PF07683 Cobalamin synthesis protein cobW C-terminal domain D5400_19825 PF02492 CobW/HypB/UreG, nucleotide-binding domain D5400_19850 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D5400_19850 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D5400_19855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_19855 PF03466 LysR substrate binding domain D5400_19880 PF00155 Aminotransferase class I and II D5400_19885 PF02080 TrkA-C domain D5400_19885 PF03600 Citrate transporter D5400_19910 PF01081 KDPG and KHG aldolase D5400_19925 PF00232 Glycosyl hydrolase family 1 D5400_19930 PF13407 Periplasmic binding protein domain D5400_19935 PF02653 Branched-chain amino acid transport system / permease component D5400_19940 PF00005 ABC transporter D5400_19945 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D5400_19945 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D5400_19955 PF00356 Bacterial regulatory proteins, lacI family D5400_19960 PF01261 Xylose isomerase-like TIM barrel D5400_19965 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D5400_19965 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D5400_19970 PF00356 Bacterial regulatory proteins, lacI family D5400_19975 PF10005 zinc-ribbon domain D5400_19975 PF15887 Putative zinc-binding metallo-peptidase D5400_19980 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5400_19985 PF00528 Binding-protein-dependent transport system inner membrane component D5400_19990 PF00528 Binding-protein-dependent transport system inner membrane component D5400_19995 PF00005 ABC transporter D5400_20000 PF01047 MarR family D5400_20015 PF07715 TonB-dependent Receptor Plug Domain D5400_20015 PF00593 TonB dependent receptor D5400_20025 PF01032 FecCD transport family D5400_20030 PF00005 ABC transporter D5400_20070 PF03466 LysR substrate binding domain D5400_20070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5400_20075 PF00141 Peroxidase D5400_20080 PF05401 Nodulation protein S (NodS) D5400_20085 PF02585 GlcNAc-PI de-N-acetylase D5400_20110 PF03275 UDP-galactopyranose mutase D5400_20115 PF02082 Transcriptional regulator D5400_20125 PF00528 Binding-protein-dependent transport system inner membrane component D5400_20130 PF00528 Binding-protein-dependent transport system inner membrane component D5400_20135 PF12857 TOBE-like domain D5400_20135 PF00005 ABC transporter D5400_20145 PF03600 Citrate transporter D5400_20145 PF02080 TrkA-C domain D5400_20155 PF01850 PIN domain D5400_20160 PF07704 Rv0623-like transcription factor D5400_20190 PF02361 Cobalt transport protein D5400_20195 PF00005 ABC transporter D5400_20200 PF02632 BioY family D5400_20210 PF00171 Aldehyde dehydrogenase family D5400_20215 PF00205 Thiamine pyrophosphate enzyme, central domain D5400_20215 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D5400_20215 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D5400_20220 PF00596 Class II Aldolase and Adducin N-terminal domain D5400_20230 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_20240 PF09084 NMT1/THI5 like D5400_20245 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D5400_20245 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D5400_20250 PF00111 2Fe-2S iron-sulfur cluster binding domain D5400_20250 PF00970 Oxidoreductase FAD-binding domain D5400_20250 PF00175 Oxidoreductase NAD-binding domain D5400_20255 PF00355 Rieske [2Fe-2S] domain D5400_20275 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_20295 PF01527 Transposase D5400_20305 PF09339 IclR helix-turn-helix domain D5400_20305 PF01614 Bacterial transcriptional regulator D5400_20310 PF02515 CoA-transferase family III D5400_20320 PF00289 Biotin carboxylase, N-terminal domain D5400_20320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D5400_20320 PF02785 Biotin carboxylase C-terminal domain D5400_20325 PF00682 HMGL-like D5400_20325 PF02436 Conserved carboxylase domain D5400_20330 PF03480 Bacterial extracellular solute-binding protein, family 7 D5400_20340 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_20350 PF00857 Isochorismatase family D5400_20360 PF04166 Pyridoxal phosphate biosynthetic protein PdxA D5400_20365 PF00561 alpha/beta hydrolase fold D5400_20370 PF00682 HMGL-like D5400_20370 PF07836 DmpG-like communication domain D5400_20375 PF01118 Semialdehyde dehydrogenase, NAD binding domain D5400_20375 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation D5400_20380 PF01557 Fumarylacetoacetate (FAA) hydrolase family D5400_20385 PF00355 Rieske [2Fe-2S] domain D5400_20395 PF14759 Reductase C-terminal D5400_20395 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5400_20405 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5400_20420 PF00355 Rieske [2Fe-2S] domain D5400_20420 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D5400_20435 PF01614 Bacterial transcriptional regulator D5400_20435 PF09339 IclR helix-turn-helix domain D5400_20445 PF00665 Integrase core domain D5400_20445 PF13276 HTH-like domain D5400_20450 PF01443 Viral (Superfamily 1) RNA helicase D5400_20450 PF17841 BID domain of Bartonella effector protein (Bep) D5400_20450 PF03389 MobA/MobL family D5400_20460 PF06412 Conjugal transfer protein TraD D5400_20465 PF13676 TIR domain D5400_20480 PF04555 Restriction endonuclease XhoI D5400_20485 PF07669 Eco57I restriction-modification methylase D5400_20485 PF12950 TaqI-like C-terminal specificity domain D5400_20490 PF08401 Domain of unknown function (DUF1738) D5400_20490 PF18818 Metallopeptidase superfamily domain D5400_20515 PF13289 SIR2-like domain D5400_20555 PF16658 Class II release factor RF3, C-terminal domain D5400_20555 PF00009 Elongation factor Tu GTP binding domain D5400_20560 PF00118 TCP-1/cpn60 chaperonin family D5400_20570 PF01661 Macro domain D5400_20610 PF00916 Sulfate permease family D5400_20610 PF01740 STAS domain D5400_20615 PF00582 Universal stress protein family D5400_20625 PF01757 Acyltransferase family D5400_20655 PF12728 Helix-turn-helix domain D5400_20655 PF12727 PBP superfamily domain D5400_20705 PF01551 Peptidase family M23 D5400_20705 PF04225 Opacity-associated protein A LysM-like domain D5400_20710 PF01476 LysM domain D5400_20710 PF03734 L,D-transpeptidase catalytic domain D5400_20715 PF07724 AAA domain (Cdc48 subfamily) D5400_20715 PF10431 C-terminal, D2-small domain, of ClpB protein D5400_20715 PF02861 Clp amino terminal domain, pathogenicity island component D5400_20715 PF17871 AAA lid domain D5400_20715 PF00004 ATPase family associated with various cellular activities (AAA) D5400_20725 PF17827 PrmC N-terminal domain D5400_20725 PF05175 Methyltransferase small domain D5400_20730 PF00472 RF-1 domain D5400_20730 PF03462 PCRF domain D5400_20735 PF02896 PEP-utilising enzyme, TIM barrel domain D5400_20735 PF00391 PEP-utilising enzyme, mobile domain D5400_20735 PF05524 PEP-utilising enzyme, N-terminal D5400_20740 PF01842 ACT domain D5400_20740 PF13840 ACT domain D5400_20740 PF00696 Amino acid kinase family D5400_20755 PF00795 Carbon-nitrogen hydrolase D5400_20760 PF00462 Glutaredoxin D5400_20765 PF00156 Phosphoribosyl transferase domain D5400_20785 PF00293 NUDIX domain D5400_20795 PF01960 ArgJ family D5400_20805 PF02810 SEC-C motif D5400_20805 PF07517 SecA DEAD-like domain D5400_20805 PF01043 SecA preprotein cross-linking domain D5400_20805 PF07516 SecA Wing and Scaffold domain D5400_20820 PF00501 AMP-binding enzyme D5400_20820 PF13193 AMP-binding enzyme C-terminal domain D5400_20825 PF03707 Bacterial signalling protein N terminal repeat D5400_20825 PF00990 Diguanylate cyclase, GGDEF domain D5400_20825 PF00563 EAL domain D5400_20840 PF02811 PHP domain D5400_20840 PF11490 DNA polymerase III polC-type N-terminus II D5400_20840 PF00929 Exonuclease D5400_20840 PF14579 Helix-hairpin-helix motif D5400_20840 PF07733 Bacterial DNA polymerase III alpha NTPase domain D5400_20840 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D5400_20850 PF12833 Helix-turn-helix domain D5400_20850 PF00730 HhH-GPD superfamily base excision DNA repair protein D5400_20850 PF06029 AlkA N-terminal domain D5400_20850 PF02805 Metal binding domain of Ada D5400_20855 PF00749 tRNA synthetases class I (E and Q), catalytic domain D5400_20865 PF03631 Virulence factor BrkB D5400_20870 PF00106 short chain dehydrogenase D5400_20880 PF01923 Cobalamin adenosyltransferase D5400_20890 PF01012 Electron transfer flavoprotein domain D5400_20895 PF01012 Electron transfer flavoprotein domain D5400_20895 PF00766 Electron transfer flavoprotein FAD-binding domain D5400_20900 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D5400_20900 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D5400_20905 PF08534 Redoxin D5400_20910 PF14698 Argininosuccinate lyase C-terminal D5400_20910 PF00206 Lyase D5400_20920 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D5400_20920 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D5400_20925 PF07694 5TMR of 5TMR-LYT D5400_20925 PF00990 Diguanylate cyclase, GGDEF domain D5400_20935 PF00072 Response regulator receiver domain D5400_20940 PF13426 PAS domain D5400_20940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5400_20940 PF00072 Response regulator receiver domain D5400_20955 PF00005 ABC transporter D5400_20985 PF02153 Prephenate dehydrogenase D5400_20990 PF00155 Aminotransferase class I and II D5400_20995 PF00561 alpha/beta hydrolase fold D5400_21000 PF00561 alpha/beta hydrolase fold D5400_21000 PF07021 Methionine biosynthesis protein MetW D5400_21015 PF01209 ubiE/COQ5 methyltransferase family D5400_21025 PF00753 Metallo-beta-lactamase superfamily D5400_21025 PF16123 Hydroxyacylglutathione hydrolase C-terminus D5400_21045 PF00830 Ribosomal L28 family D5400_21050 PF02592 Putative vitamin uptake transporter D5400_21060 PF06213 Cobalamin biosynthesis protein CobT D5400_21060 PF11775 Cobalamin biosynthesis protein CobT VWA domain D5400_21065 PF08406 CbbQ/NirQ/NorQ C-terminal D5400_21065 PF12556 Cobaltochelatase CobS subunit N terminal D5400_21065 PF07728 AAA domain (dynein-related subfamily) D5400_21070 PF00226 DnaJ domain D5400_21075 PF01722 BolA-like protein D5400_21080 PF03471 Transporter associated domain D5400_21080 PF01595 Cyclin M transmembrane N-terminal domain D5400_21080 PF00571 CBS domain D5400_21085 PF01761 3-dehydroquinate synthase D5400_21090 PF01202 Shikimate kinase D5400_21100 PF02899 Phage integrase, N-terminal SAM-like domain D5400_21100 PF00589 Phage integrase family D5400_21105 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D5400_21115 PF00501 AMP-binding enzyme D5400_21115 PF13193 AMP-binding enzyme C-terminal domain D5400_21120 PF02770 Acyl-CoA dehydrogenase, middle domain D5400_21120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D5400_21120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D5400_21125 PF00378 Enoyl-CoA hydratase/isomerase D5400_21125 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D5400_21125 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D5400_21140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D5400_21145 PF02569 Pantoate-beta-alanine ligase D5400_21150 PF13417 Glutathione S-transferase, N-terminal domain D5400_21155 PF00578 AhpC/TSA family D5400_21155 PF10417 C-terminal domain of 1-Cys peroxiredoxin D5400_21165 PF02441 Flavoprotein D5400_21165 PF04127 DNA / pantothenate metabolism flavoprotein D5400_21175 PF03109 ABC1 family D5400_21180 PF01209 ubiE/COQ5 methyltransferase family D5400_21185 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D5400_21185 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D5400_21185 PF06827 Zinc finger found in FPG and IleRS D5400_21190 PF00378 Enoyl-CoA hydratase/isomerase D5400_21195 PF01649 Ribosomal protein S20