locus-tag class description AMC99_00001 PF01709 Transcriptional regulator AMC99_00002 PF02075 Crossover junction endodeoxyribonuclease RuvC AMC99_00003 PF03960 ArsC family AMC99_00004 PF04973 Nicotinamide mononucleotide transporter AMC99_00006 PF03009 Glycerophosphoryl diester phosphodiesterase family AMC99_00007 PF14437 MafB19-like deaminase AMC99_00008 PF07690 Major Facilitator Superfamily AMC99_00009 PF08241 Methyltransferase domain AMC99_00010 PF13840 ACT domain AMC99_00010 PF01842 ACT domain AMC99_00010 PF00696 Amino acid kinase family AMC99_00013 PF03060 Nitronate monooxygenase AMC99_00017 PF00551 Formyl transferase AMC99_00019 PF13360 PQQ-like domain AMC99_00019 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMC99_00020 PF16200 C-terminal region of band_7 AMC99_00020 PF01145 SPFH domain / Band 7 family AMC99_00024 PF00589 Phage integrase family AMC99_00024 PF13356 Arm DNA-binding domain AMC99_00024 PF14659 Phage integrase, N-terminal SAM-like domain AMC99_00030 PF02195 ParB-like nuclease domain AMC99_00032 PF01381 Helix-turn-helix AMC99_00035 PF17782 DprA winged helix domain AMC99_00035 PF02481 DNA recombination-mediator protein A AMC99_00037 PF02481 DNA recombination-mediator protein A AMC99_00037 PF18255 DNA processing protein A sterile alpha motif domain AMC99_00042 PF18818 Metallopeptidase superfamily domain AMC99_00042 PF08401 Domain of unknown function (DUF1738) AMC99_00046 PF00436 Single-strand binding protein family AMC99_00052 PF18272 single-stranded DNA binding TraI N-terminal subdomain AMC99_00052 PF07057 DNA helicase TraI AMC99_00052 PF18340 DNA relaxase TraI 2B/2B-like domain AMC99_00052 PF08751 TrwC relaxase AMC99_00056 PF00176 SNF2 family N-terminal domain AMC99_00056 PF04434 SWIM zinc finger AMC99_00056 PF00271 Helicase conserved C-terminal domain AMC99_00059 PF03852 DNA mismatch endonuclease Vsr AMC99_00060 PF00145 C-5 cytosine-specific DNA methylase AMC99_00060 PF18284 DNA methylase N-terminal domain AMC99_00061 PF00171 Aldehyde dehydrogenase family AMC99_00065 PF06122 Conjugative relaxosome accessory transposon protein AMC99_00069 PF06834 TraU protein AMC99_00071 PF10502 Signal peptidase, peptidase S26 AMC99_00085 PF00873 AcrB/AcrD/AcrF family AMC99_00086 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMC99_00087 PF02321 Outer membrane efflux protein AMC99_00089 PF09278 MerR, DNA binding AMC99_00089 PF00376 MerR family regulatory protein AMC99_00092 PF05275 Copper resistance protein B precursor (CopB) AMC99_00093 PF07732 Multicopper oxidase AMC99_00093 PF07731 Multicopper oxidase AMC99_00093 PF00394 Multicopper oxidase AMC99_00094 PF04542 Sigma-70 region 2 AMC99_00094 PF08281 Sigma-70, region 4 AMC99_00095 PF13801 Heavy-metal resistance AMC99_00111 PF00486 Transcriptional regulatory protein, C terminal AMC99_00111 PF00072 Response regulator receiver domain AMC99_00112 PF00672 HAMP domain AMC99_00112 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_00112 PF00512 His Kinase A (phospho-acceptor) domain AMC99_00116 PF00920 Dehydratase family AMC99_00117 PF04055 Radical SAM superfamily AMC99_00119 PF02082 Transcriptional regulator AMC99_00123 PF00484 Carbonic anhydrase AMC99_00128 PF07690 Major Facilitator Superfamily AMC99_00129 PF14710 Respiratory nitrate reductase alpha N-terminal AMC99_00129 PF01568 Molydopterin dinucleotide binding domain AMC99_00129 PF00384 Molybdopterin oxidoreductase AMC99_00130 PF14711 Respiratory nitrate reductase beta C-terminal AMC99_00130 PF13247 4Fe-4S dicluster domain AMC99_00131 PF02613 Nitrate reductase delta subunit AMC99_00132 PF02665 Nitrate reductase gamma subunit AMC99_00133 PF09312 SurA N-terminal domain AMC99_00133 PF00639 PPIC-type PPIASE domain AMC99_00134 PF06463 Molybdenum Cofactor Synthesis C AMC99_00134 PF04055 Radical SAM superfamily AMC99_00136 PF02391 MoaE protein AMC99_00137 PF00994 Probable molybdopterin binding domain AMC99_00138 PF00994 Probable molybdopterin binding domain AMC99_00138 PF03454 MoeA C-terminal region (domain IV) AMC99_00138 PF03453 MoeA N-terminal region (domain I and II) AMC99_00140 PF12804 MobA-like NTP transferase domain AMC99_00141 PF01243 Pyridoxamine 5'-phosphate oxidase AMC99_00141 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMC99_00142 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_00142 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_00142 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_00144 PF00111 2Fe-2S iron-sulfur cluster binding domain AMC99_00146 PF00027 Cyclic nucleotide-binding domain AMC99_00146 PF13545 Crp-like helix-turn-helix domain AMC99_00147 PF01758 Sodium Bile acid symporter family AMC99_00148 PF13520 Amino acid permease AMC99_00150 PF03466 LysR substrate binding domain AMC99_00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMC99_00151 PF00171 Aldehyde dehydrogenase family AMC99_00152 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMC99_00152 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMC99_00153 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_00153 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_00153 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_00156 PF00037 4Fe-4S binding domain AMC99_00156 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMC99_00156 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMC99_00157 PF02634 FdhD/NarQ family AMC99_00158 PF01568 Molydopterin dinucleotide binding domain AMC99_00158 PF12838 4Fe-4S dicluster domain AMC99_00158 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMC99_00158 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMC99_00158 PF00384 Molybdopterin oxidoreductase AMC99_00160 PF03358 NADPH-dependent FMN reductase AMC99_00168 PF00664 ABC transporter transmembrane region AMC99_00168 PF00005 ABC transporter AMC99_00171 PF01943 Polysaccharide biosynthesis protein AMC99_00171 PF14667 Polysaccharide biosynthesis C-terminal domain AMC99_00172 PF01757 Acyltransferase family AMC99_00179 PF13439 Glycosyltransferase Family 4 AMC99_00179 PF00534 Glycosyl transferases group 1 AMC99_00180 PF02706 Chain length determinant protein AMC99_00180 PF13807 G-rich domain on putative tyrosine kinase AMC99_00180 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMC99_00183 PF02350 UDP-N-acetylglucosamine 2-epimerase AMC99_00184 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMC99_00184 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMC99_00184 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMC99_00187 PF02515 CoA-transferase family III AMC99_00189 PF06055 Exopolysaccharide synthesis, ExoD AMC99_00190 PF02321 Outer membrane efflux protein AMC99_00191 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMC99_00192 PF00005 ABC transporter AMC99_00192 PF02687 FtsX-like permease family AMC99_00192 PF12704 MacB-like periplasmic core domain AMC99_00194 PF13977 BetI-type transcriptional repressor, C-terminal AMC99_00194 PF00440 Bacterial regulatory proteins, tetR family AMC99_00195 PF17862 AAA+ lid domain AMC99_00195 PF00004 ATPase family associated with various cellular activities (AAA) AMC99_00195 PF01434 Peptidase family M41 AMC99_00199 PF10609 NUBPL iron-transfer P-loop NTPase AMC99_00200 PF01192 RNA polymerase Rpb6 AMC99_00201 PF13396 Phospholipase_D-nuclease N-terminal AMC99_00201 PF13091 PLD-like domain AMC99_00202 PF03796 DnaB-like helicase C terminal domain AMC99_00202 PF00772 DnaB-like helicase N terminal domain AMC99_00203 PF06793 Uncharacterised protein family (UPF0262) AMC99_00205 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMC99_00206 PF04239 Protein of unknown function (DUF421) AMC99_00207 PF18027 Cytosolic carboxypeptidase N-terminal domain AMC99_00207 PF00246 Zinc carboxypeptidase AMC99_00209 PF01370 NAD dependent epimerase/dehydratase family AMC99_00210 PF00444 Ribosomal protein L36 AMC99_00213 PF01638 HxlR-like helix-turn-helix AMC99_00216 PF01078 Magnesium chelatase, subunit ChlI AMC99_00216 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMC99_00218 PF00468 Ribosomal protein L34 AMC99_00219 PF00825 Ribonuclease P AMC99_00220 PF01809 Putative membrane protein insertion efficiency factor AMC99_00221 PF14849 YidC periplasmic domain AMC99_00221 PF02096 60Kd inner membrane protein AMC99_00222 PF01926 50S ribosome-binding GTPase AMC99_00224 PF13417 Glutathione S-transferase, N-terminal domain AMC99_00224 PF00043 Glutathione S-transferase, C-terminal domain AMC99_00227 PF07687 Peptidase dimerisation domain AMC99_00227 PF01546 Peptidase family M20/M25/M40 AMC99_00228 PF00375 Sodium:dicarboxylate symporter family AMC99_00230 PF00633 Helix-hairpin-helix motif AMC99_00230 PF10576 Iron-sulfur binding domain of endonuclease III AMC99_00230 PF00730 HhH-GPD superfamily base excision DNA repair protein AMC99_00232 PF01113 Dihydrodipicolinate reductase, N-terminus AMC99_00232 PF05173 Dihydrodipicolinate reductase, C-terminus AMC99_00233 PF00561 alpha/beta hydrolase fold AMC99_00234 PF02146 Sir2 family AMC99_00236 PF00899 ThiF family AMC99_00238 PF11638 DnaA N-terminal domain AMC99_00238 PF00308 Bacterial dnaA protein AMC99_00238 PF08299 Bacterial dnaA protein helix-turn-helix AMC99_00239 PF01649 Ribosomal protein S20 AMC99_00240 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMC99_00240 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMC99_00240 PF06827 Zinc finger found in FPG and IleRS AMC99_00241 PF01209 ubiE/COQ5 methyltransferase family AMC99_00242 PF03109 ABC1 family AMC99_00245 PF04127 DNA / pantothenate metabolism flavoprotein AMC99_00245 PF02441 Flavoprotein AMC99_00246 PF00692 dUTPase AMC99_00250 PF00579 tRNA synthetases class I (W and Y) AMC99_00251 PF03023 Lipid II flippase MurJ AMC99_00252 PF02556 Preprotein translocase subunit SecB AMC99_00253 PF04280 Tim44-like domain AMC99_00260 PF00141 Peroxidase AMC99_00261 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMC99_00261 PF13192 Thioredoxin domain AMC99_00262 PF00578 AhpC/TSA family AMC99_00262 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMC99_00263 PF00144 Beta-lactamase AMC99_00264 PF01264 Chorismate synthase AMC99_00266 PF01330 RuvA N terminal domain AMC99_00266 PF07499 RuvA, C-terminal domain AMC99_00267 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMC99_00267 PF05491 RuvB C-terminal winged helix domain AMC99_00267 PF17864 RuvB AAA lid domain AMC99_00273 PF00694 Aconitase C-terminal domain AMC99_00273 PF00330 Aconitase family (aconitate hydratase) AMC99_00276 PF00892 EamA-like transporter family AMC99_00277 PF01471 Putative peptidoglycan binding domain AMC99_00277 PF03734 L,D-transpeptidase catalytic domain AMC99_00279 PF00850 Histone deacetylase domain AMC99_00280 PF04551 GcpE protein AMC99_00281 PF01544 CorA-like Mg2+ transporter protein AMC99_00282 PF00106 short chain dehydrogenase AMC99_00284 PF05552 Conserved TM helix AMC99_00287 PF00583 Acetyltransferase (GNAT) family AMC99_00291 PF07726 ATPase family associated with various cellular activities (AAA) AMC99_00291 PF17863 AAA lid domain AMC99_00294 PF00800 Prephenate dehydratase AMC99_00295 PF00034 Cytochrome c AMC99_00296 PF01728 FtsJ-like methyltransferase AMC99_00297 PF02541 Ppx/GppA phosphatase family AMC99_00302 PF08543 Phosphomethylpyrimidine kinase AMC99_00303 PF06906 Protein of unknown function (DUF1272) AMC99_00304 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMC99_00304 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMC99_00304 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMC99_00304 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMC99_00306 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMC99_00306 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMC99_00308 PF08281 Sigma-70, region 4 AMC99_00308 PF04542 Sigma-70 region 2 AMC99_00310 PF07536 HWE histidine kinase AMC99_00310 PF13581 Histidine kinase-like ATPase domain AMC99_00310 PF13426 PAS domain AMC99_00311 PF00072 Response regulator receiver domain AMC99_00312 PF00027 Cyclic nucleotide-binding domain AMC99_00312 PF13545 Crp-like helix-turn-helix domain AMC99_00320 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMC99_00322 PF00561 alpha/beta hydrolase fold AMC99_00322 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AMC99_00323 PF00155 Aminotransferase class I and II AMC99_00327 PF00486 Transcriptional regulatory protein, C terminal AMC99_00327 PF00072 Response regulator receiver domain AMC99_00328 PF00378 Enoyl-CoA hydratase/isomerase AMC99_00332 PF03551 Transcriptional regulator PadR-like family AMC99_00332 PF13847 Methyltransferase domain AMC99_00333 PF02219 Methylenetetrahydrofolate reductase AMC99_00334 PF02574 Homocysteine S-methyltransferase AMC99_00334 PF00809 Pterin binding enzyme AMC99_00334 PF02310 B12 binding domain AMC99_00334 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMC99_00334 PF02607 B12 binding domain AMC99_00335 PF02574 Homocysteine S-methyltransferase AMC99_00335 PF00809 Pterin binding enzyme AMC99_00335 PF02607 B12 binding domain AMC99_00335 PF02310 B12 binding domain AMC99_00335 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMC99_00337 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMC99_00337 PF01571 Aminomethyltransferase folate-binding domain AMC99_00338 PF01597 Glycine cleavage H-protein AMC99_00339 PF02347 Glycine cleavage system P-protein AMC99_00340 PF00266 Aminotransferase class-V AMC99_00342 PF00378 Enoyl-CoA hydratase/isomerase AMC99_00343 PF00378 Enoyl-CoA hydratase/isomerase AMC99_00344 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMC99_00347 PF01042 Endoribonuclease L-PSP AMC99_00349 PF00356 Bacterial regulatory proteins, lacI family AMC99_00350 PF04055 Radical SAM superfamily AMC99_00354 PF05751 FixH AMC99_00355 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMC99_00355 PF13746 4Fe-4S dicluster domain AMC99_00355 PF12801 4Fe-4S binding domain AMC99_00356 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMC99_00356 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AMC99_00359 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMC99_00360 PF13545 Crp-like helix-turn-helix domain AMC99_00360 PF00027 Cyclic nucleotide-binding domain AMC99_00363 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_00363 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_00363 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_00364 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_00364 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_00364 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_00365 PF00106 short chain dehydrogenase AMC99_00367 PF00210 Ferritin-like domain AMC99_00368 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMC99_00369 PF00293 NUDIX domain AMC99_00370 PF11799 impB/mucB/samB family C-terminal domain AMC99_00370 PF00817 impB/mucB/samB family AMC99_00370 PF11798 IMS family HHH motif AMC99_00373 PF01039 Carboxyl transferase domain AMC99_00375 PF00289 Biotin carboxylase, N-terminal domain AMC99_00375 PF00364 Biotin-requiring enzyme AMC99_00375 PF02785 Biotin carboxylase C-terminal domain AMC99_00375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMC99_00378 PF03641 Possible lysine decarboxylase AMC99_00379 PF01593 Flavin containing amine oxidoreductase AMC99_00386 PF03061 Thioesterase superfamily AMC99_00387 PF03060 Nitronate monooxygenase AMC99_00388 PF00743 Flavin-binding monooxygenase-like AMC99_00391 PF00440 Bacterial regulatory proteins, tetR family AMC99_00392 PF00743 Flavin-binding monooxygenase-like AMC99_00394 PF01964 Radical SAM ThiC family AMC99_00394 PF13667 ThiC-associated domain AMC99_00400 PF08212 Lipocalin-like domain AMC99_00401 PF00313 'Cold-shock' DNA-binding domain AMC99_00404 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMC99_00406 PF08274 PhnA Zinc-Ribbon AMC99_00406 PF03831 PhnA domain AMC99_00418 PF14602 Hexapeptide repeat of succinyl-transferase AMC99_00418 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMC99_00421 PF08240 Alcohol dehydrogenase GroES-like domain AMC99_00421 PF00107 Zinc-binding dehydrogenase AMC99_00422 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_00422 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_00422 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_00424 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_00424 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_00424 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_00425 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_00425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_00425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_00427 PF00625 Guanylate kinase AMC99_00430 PF00475 Imidazoleglycerol-phosphate dehydratase AMC99_00431 PF00117 Glutamine amidotransferase class-I AMC99_00432 PF00977 Histidine biosynthesis protein AMC99_00434 PF00977 Histidine biosynthesis protein AMC99_00435 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMC99_00436 PF01230 HIT domain AMC99_00437 PF03061 Thioesterase superfamily AMC99_00438 PF01618 MotA/TolQ/ExbB proton channel family AMC99_00439 PF02472 Biopolymer transport protein ExbD/TolR AMC99_00441 PF04052 TolB amino-terminal domain AMC99_00441 PF07676 WD40-like Beta Propeller Repeat AMC99_00442 PF00691 OmpA family AMC99_00444 PF00226 DnaJ domain AMC99_00444 PF00684 DnaJ central domain AMC99_00444 PF01556 DnaJ C terminal domain AMC99_00447 PF01053 Cys/Met metabolism PLP-dependent enzyme AMC99_00448 PF00939 Sodium:sulfate symporter transmembrane region AMC99_00449 PF05198 Translation initiation factor IF-3, N-terminal domain AMC99_00449 PF00707 Translation initiation factor IF-3, C-terminal domain AMC99_00451 PF01218 Coproporphyrinogen III oxidase AMC99_00453 PF01433 Peptidase family M1 domain AMC99_00455 PF04607 Region found in RelA / SpoT proteins AMC99_00455 PF13291 ACT domain AMC99_00455 PF02824 TGS domain AMC99_00457 PF00672 HAMP domain AMC99_00457 PF12729 Four helix bundle sensory module for signal transduction AMC99_00457 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMC99_00471 PF00135 Carboxylesterase family AMC99_00472 PF07715 TonB-dependent Receptor Plug Domain AMC99_00472 PF00593 TonB dependent receptor AMC99_00473 PF00593 TonB dependent receptor AMC99_00473 PF07715 TonB-dependent Receptor Plug Domain AMC99_00474 PF00135 Carboxylesterase family AMC99_00475 PF07690 Major Facilitator Superfamily AMC99_00476 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMC99_00476 PF00378 Enoyl-CoA hydratase/isomerase AMC99_00476 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMC99_00477 PF00144 Beta-lactamase AMC99_00478 PF02803 Thiolase, C-terminal domain AMC99_00478 PF00108 Thiolase, N-terminal domain AMC99_00479 PF13193 AMP-binding enzyme C-terminal domain AMC99_00479 PF00501 AMP-binding enzyme AMC99_00480 PF00440 Bacterial regulatory proteins, tetR family AMC99_00480 PF17932 Tetracyclin repressor-like, C-terminal domain AMC99_00482 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_00482 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_00482 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_00483 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_00483 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_00483 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_00485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_00485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_00485 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_00487 PF00356 Bacterial regulatory proteins, lacI family AMC99_00490 PF00294 pfkB family carbohydrate kinase AMC99_00491 PF00135 Carboxylesterase family AMC99_00497 PF04616 Glycosyl hydrolases family 43 AMC99_00497 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMC99_00498 PF03480 Bacterial extracellular solute-binding protein, family 7 AMC99_00500 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMC99_00501 PF08666 SAF domain AMC99_00501 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AMC99_00502 PF02614 Glucuronate isomerase AMC99_00503 PF08125 Mannitol dehydrogenase C-terminal domain AMC99_00503 PF01232 Mannitol dehydrogenase Rossmann domain AMC99_00504 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_00504 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_00504 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_00507 PF00478 IMP dehydrogenase / GMP reductase domain AMC99_00507 PF00571 CBS domain AMC99_00508 PF00929 Exonuclease AMC99_00510 PF00474 Sodium:solute symporter family AMC99_00511 PF00512 His Kinase A (phospho-acceptor) domain AMC99_00511 PF09456 RcsC Alpha-Beta-Loop (ABL) AMC99_00511 PF00072 Response regulator receiver domain AMC99_00511 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_00512 PF00072 Response regulator receiver domain AMC99_00512 PF00196 Bacterial regulatory proteins, luxR family AMC99_00513 PF00501 AMP-binding enzyme AMC99_00513 PF13193 AMP-binding enzyme C-terminal domain AMC99_00513 PF16177 Acetyl-coenzyme A synthetase N-terminus AMC99_00515 PF13193 AMP-binding enzyme C-terminal domain AMC99_00515 PF00501 AMP-binding enzyme AMC99_00515 PF16177 Acetyl-coenzyme A synthetase N-terminus AMC99_00519 PF02545 Maf-like protein AMC99_00520 PF01176 Translation initiation factor 1A / IF-1 AMC99_00522 PF00561 alpha/beta hydrolase fold AMC99_00523 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMC99_00523 PF06974 Protein of unknown function (DUF1298) AMC99_00525 PF00196 Bacterial regulatory proteins, luxR family AMC99_00525 PF00072 Response regulator receiver domain AMC99_00526 PF08459 UvrC Helix-hairpin-helix N-terminal AMC99_00526 PF02151 UvrB/uvrC motif AMC99_00526 PF01541 GIY-YIG catalytic domain AMC99_00528 PF12343 Cold shock protein DEAD box A AMC99_00528 PF03880 DbpA RNA binding domain AMC99_00528 PF00271 Helicase conserved C-terminal domain AMC99_00528 PF00270 DEAD/DEAH box helicase AMC99_00533 PF03030 Inorganic H+ pyrophosphatase AMC99_00534 PF00586 AIR synthase related protein, N-terminal domain AMC99_00534 PF02769 AIR synthase related protein, C-terminal domain AMC99_00535 PF01029 NusB family AMC99_00536 PF00815 Histidinol dehydrogenase AMC99_00537 PF01634 ATP phosphoribosyltransferase AMC99_00540 PF02678 Pirin AMC99_00540 PF05726 Pirin C-terminal cupin domain AMC99_00541 PF01722 BolA-like protein AMC99_00542 PF00226 DnaJ domain AMC99_00546 PF07237 Protein of unknown function (DUF1428) AMC99_00550 PF12556 Cobaltochelatase CobS subunit N terminal AMC99_00550 PF08406 CbbQ/NirQ/NorQ C-terminal AMC99_00550 PF07728 AAA domain (dynein-related subfamily) AMC99_00551 PF00912 Transglycosylase AMC99_00551 PF00905 Penicillin binding protein transpeptidase domain AMC99_00551 PF17092 Penicillin-binding protein OB-like domain AMC99_00557 PF03652 Holliday junction resolvase AMC99_00559 PF01594 AI-2E family transporter AMC99_00560 PF10502 Signal peptidase, peptidase S26 AMC99_00561 PF01648 4'-phosphopantetheinyl transferase superfamily AMC99_00562 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMC99_00563 PF00156 Phosphoribosyl transferase domain AMC99_00564 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMC99_00564 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMC99_00565 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMC99_00566 PF00561 alpha/beta hydrolase fold AMC99_00567 PF01040 UbiA prenyltransferase family AMC99_00569 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMC99_00570 PF00510 Cytochrome c oxidase subunit III AMC99_00573 PF00291 Pyridoxal-phosphate dependent enzyme AMC99_00573 PF14821 Threonine synthase N terminus AMC99_00577 PF06463 Molybdenum Cofactor Synthesis C AMC99_00577 PF04055 Radical SAM superfamily AMC99_00579 PF02391 MoaE protein AMC99_00580 PF13545 Crp-like helix-turn-helix domain AMC99_00580 PF00027 Cyclic nucleotide-binding domain AMC99_00582 PF00829 Ribosomal prokaryotic L21 protein AMC99_00583 PF01016 Ribosomal L27 protein AMC99_00584 PF13302 Acetyltransferase (GNAT) domain AMC99_00589 PF01979 Amidohydrolase family AMC99_00590 PF00892 EamA-like transporter family AMC99_00593 PF00171 Aldehyde dehydrogenase family AMC99_00594 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMC99_00598 PF13360 PQQ-like domain AMC99_00600 PF03992 Antibiotic biosynthesis monooxygenase AMC99_00601 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMC99_00604 PF01040 UbiA prenyltransferase family AMC99_00607 PF09278 MerR, DNA binding AMC99_00607 PF00376 MerR family regulatory protein AMC99_00609 PF13307 Helicase C-terminal domain AMC99_00610 PF01053 Cys/Met metabolism PLP-dependent enzyme AMC99_00611 PF01037 Lrp/AsnC ligand binding domain AMC99_00612 PF00924 Mechanosensitive ion channel AMC99_00612 PF05552 Conserved TM helix AMC99_00613 PF00144 Beta-lactamase AMC99_00620 PF00313 'Cold-shock' DNA-binding domain AMC99_00623 PF01176 Translation initiation factor 1A / IF-1 AMC99_00626 PF01921 tRNA synthetases class I (K) AMC99_00632 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMC99_00634 PF01022 Bacterial regulatory protein, arsR family AMC99_00635 PF12848 ABC transporter AMC99_00635 PF00005 ABC transporter AMC99_00636 PF17151 Periplasmic sensor domain AMC99_00636 PF00990 Diguanylate cyclase, GGDEF domain AMC99_00641 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_00641 PF00512 His Kinase A (phospho-acceptor) domain AMC99_00641 PF00989 PAS fold AMC99_00641 PF13188 PAS domain AMC99_00642 PF01037 Lrp/AsnC ligand binding domain AMC99_00646 PF00289 Biotin carboxylase, N-terminal domain AMC99_00646 PF02785 Biotin carboxylase C-terminal domain AMC99_00646 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMC99_00647 PF00364 Biotin-requiring enzyme AMC99_00648 PF01220 Dehydroquinase class II AMC99_00650 PF03328 HpcH/HpaI aldolase/citrate lyase family AMC99_00652 PF02699 Preprotein translocase subunit AMC99_00653 PF07549 SecD/SecF GG Motif AMC99_00653 PF02355 Protein export membrane protein AMC99_00654 PF02355 Protein export membrane protein AMC99_00654 PF07549 SecD/SecF GG Motif AMC99_00655 PF13579 Glycosyl transferase 4-like domain AMC99_00655 PF00534 Glycosyl transferases group 1 AMC99_00658 PF03167 Uracil DNA glycosylase superfamily AMC99_00662 PF00486 Transcriptional regulatory protein, C terminal AMC99_00662 PF00072 Response regulator receiver domain AMC99_00663 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_00663 PF08918 PhoQ Sensor AMC99_00665 PF02153 Prephenate dehydrogenase AMC99_00665 PF01817 Chorismate mutase type II AMC99_00666 PF00348 Polyprenyl synthetase AMC99_00667 PF00248 Aldo/keto reductase family AMC99_00668 PF08482 ATP-dependent helicase C-terminal AMC99_00668 PF00271 Helicase conserved C-terminal domain AMC99_00668 PF04408 Helicase associated domain (HA2) AMC99_00668 PF00270 DEAD/DEAH box helicase AMC99_00671 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMC99_00671 PF12169 DNA polymerase III subunits gamma and tau domain III AMC99_00671 PF12170 DNA polymerase III tau subunit V interacting with alpha AMC99_00672 PF02575 YbaB/EbfC DNA-binding family AMC99_00674 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMC99_00674 PF05362 Lon protease (S16) C-terminal proteolytic domain AMC99_00674 PF00004 ATPase family associated with various cellular activities (AAA) AMC99_00675 PF00216 Bacterial DNA-binding protein AMC99_00677 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMC99_00677 PF00588 SpoU rRNA Methylase family AMC99_00679 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMC99_00679 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMC99_00681 PF02666 Phosphatidylserine decarboxylase AMC99_00682 PF01066 CDP-alcohol phosphatidyltransferase AMC99_00684 PF00318 Ribosomal protein S2 AMC99_00685 PF00889 Elongation factor TS AMC99_00686 PF00696 Amino acid kinase family AMC99_00687 PF01765 Ribosome recycling factor AMC99_00688 PF01255 Putative undecaprenyl diphosphate synthase AMC99_00690 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMC99_00690 PF13288 DXP reductoisomerase C-terminal domain AMC99_00690 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMC99_00691 PF02163 Peptidase family M50 AMC99_00691 PF17820 PDZ domain AMC99_00694 PF07977 FabA-like domain AMC99_00695 PF01197 Ribosomal protein L31 AMC99_00700 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMC99_00700 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMC99_00701 PF01578 Cytochrome C assembly protein AMC99_00703 PF03100 CcmE AMC99_00704 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMC99_00704 PF01578 Cytochrome C assembly protein AMC99_00705 PF08534 Redoxin AMC99_00706 PF03918 Cytochrome C biogenesis protein AMC99_00708 PF02705 K+ potassium transporter AMC99_00710 PF04279 Intracellular septation protein A AMC99_00711 PF02881 SRP54-type protein, helical bundle domain AMC99_00711 PF00448 SRP54-type protein, GTPase domain AMC99_00712 PF00919 Uncharacterized protein family UPF0004 AMC99_00712 PF04055 Radical SAM superfamily AMC99_00713 PF01678 Diaminopimelate epimerase AMC99_00714 PF00563 EAL domain AMC99_00714 PF00990 Diguanylate cyclase, GGDEF domain AMC99_00714 PF03707 Bacterial signalling protein N terminal repeat AMC99_00714 PF13188 PAS domain AMC99_00719 PF01066 CDP-alcohol phosphatidyltransferase AMC99_00722 PF03466 LysR substrate binding domain AMC99_00722 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMC99_00723 PF01612 3'-5' exonuclease AMC99_00723 PF00570 HRDC domain AMC99_00724 PF01336 OB-fold nucleic acid binding domain AMC99_00724 PF02938 GAD domain AMC99_00724 PF00152 tRNA synthetases class II (D, K and N) AMC99_00725 PF00550 Phosphopantetheine attachment site AMC99_00726 PF02801 Beta-ketoacyl synthase, C-terminal domain AMC99_00726 PF00109 Beta-ketoacyl synthase, N-terminal domain AMC99_00727 PF02618 YceG-like family AMC99_00734 PF03734 L,D-transpeptidase catalytic domain AMC99_00734 PF01471 Putative peptidoglycan binding domain AMC99_00735 PF00265 Thymidine kinase AMC99_00736 PF02163 Peptidase family M50 AMC99_00737 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMC99_00737 PF01266 FAD dependent oxidoreductase AMC99_00738 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMC99_00738 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMC99_00739 PF00312 Ribosomal protein S15 AMC99_00740 PF00575 S1 RNA binding domain AMC99_00740 PF01138 3' exoribonuclease family, domain 1 AMC99_00740 PF00013 KH domain AMC99_00740 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMC99_00740 PF03725 3' exoribonuclease family, domain 2 AMC99_00745 PF01061 ABC-2 type transporter AMC99_00749 PF00378 Enoyl-CoA hydratase/isomerase AMC99_00752 PF00593 TonB dependent receptor AMC99_00752 PF07715 TonB-dependent Receptor Plug Domain AMC99_00759 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMC99_00760 PF00899 ThiF family AMC99_00760 PF00581 Rhodanese-like domain AMC99_00762 PF00873 AcrB/AcrD/AcrF family AMC99_00763 PF00085 Thioredoxin AMC99_00765 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMC99_00765 PF00578 AhpC/TSA family AMC99_00767 PF00753 Metallo-beta-lactamase superfamily AMC99_00770 PF01740 STAS domain AMC99_00770 PF00916 Sulfate permease family AMC99_00772 PF01022 Bacterial regulatory protein, arsR family AMC99_00773 PF01597 Glycine cleavage H-protein AMC99_00775 PF02754 Cysteine-rich domain AMC99_00778 PF04324 BFD-like [2Fe-2S] binding domain AMC99_00778 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMC99_00783 PF03099 Biotin/lipoate A/B protein ligase family AMC99_00786 PF00850 Histone deacetylase domain AMC99_00787 PF13686 DsrE/DsrF/DrsH-like family AMC99_00788 PF01206 Sulfurtransferase TusA AMC99_00790 PF01568 Molydopterin dinucleotide binding domain AMC99_00790 PF00384 Molybdopterin oxidoreductase AMC99_00790 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMC99_00791 PF13247 4Fe-4S dicluster domain AMC99_00791 PF12800 4Fe-4S binding domain AMC99_00792 PF04976 DMSO reductase anchor subunit (DmsC) AMC99_00793 PF10609 NUBPL iron-transfer P-loop NTPase AMC99_00795 PF00578 AhpC/TSA family AMC99_00795 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMC99_00796 PF01654 Cytochrome bd terminal oxidase subunit I AMC99_00797 PF02322 Cytochrome bd terminal oxidase subunit II AMC99_00799 PF01575 MaoC like domain AMC99_00800 PF00171 Aldehyde dehydrogenase family AMC99_00801 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMC99_00801 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMC99_00802 PF08240 Alcohol dehydrogenase GroES-like domain AMC99_00802 PF00107 Zinc-binding dehydrogenase AMC99_00804 PF00756 Putative esterase AMC99_00806 PF02798 Glutathione S-transferase, N-terminal domain AMC99_00806 PF14497 Glutathione S-transferase, C-terminal domain AMC99_00807 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_00807 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_00807 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_00812 PF12450 von Willebrand factor AMC99_00812 PF12034 Domain of unknown function (DUF3520) AMC99_00812 PF00092 von Willebrand factor type A domain AMC99_00814 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMC99_00814 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMC99_00815 PF00814 Glycoprotease family AMC99_00816 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMC99_00816 PF03900 Porphobilinogen deaminase, C-terminal domain AMC99_00819 PF01494 FAD binding domain AMC99_00820 PF11412 Disulphide bond corrector protein DsbC AMC99_00820 PF02683 Cytochrome C biogenesis protein transmembrane region AMC99_00820 PF13098 Thioredoxin-like domain AMC99_00822 PF00271 Helicase conserved C-terminal domain AMC99_00822 PF04851 Type III restriction enzyme, res subunit AMC99_00822 PF02151 UvrB/uvrC motif AMC99_00822 PF12344 Ultra-violet resistance protein B AMC99_00822 PF17757 UvrB interaction domain AMC99_00824 PF12697 Alpha/beta hydrolase family AMC99_00824 PF08241 Methyltransferase domain AMC99_00825 PF14403 Circularly permuted ATP-grasp type 2 AMC99_00829 PF00072 Response regulator receiver domain AMC99_00829 PF00196 Bacterial regulatory proteins, luxR family AMC99_00831 PF01022 Bacterial regulatory protein, arsR family AMC99_00838 PF00593 TonB dependent receptor AMC99_00838 PF07715 TonB-dependent Receptor Plug Domain AMC99_00839 PF05656 Protein of unknown function (DUF805) AMC99_00841 PF00005 ABC transporter AMC99_00842 PF13472 GDSL-like Lipase/Acylhydrolase family AMC99_00843 PF02463 RecF/RecN/SMC N terminal domain AMC99_00848 PF00293 NUDIX domain AMC99_00852 PF01741 Large-conductance mechanosensitive channel, MscL AMC99_00855 PF04996 Succinylarginine dihydrolase AMC99_00856 PF04958 Arginine N-succinyltransferase beta subunit AMC99_00857 PF01546 Peptidase family M20/M25/M40 AMC99_00857 PF07687 Peptidase dimerisation domain AMC99_00858 PF01274 Malate synthase AMC99_00860 PF00398 Ribosomal RNA adenine dimethylase AMC99_00861 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMC99_00862 PF00639 PPIC-type PPIASE domain AMC99_00862 PF09312 SurA N-terminal domain AMC99_00863 PF04453 LPS transport system D AMC99_00863 PF03968 OstA-like protein AMC99_00864 PF02789 Cytosol aminopeptidase family, N-terminal domain AMC99_00864 PF00883 Cytosol aminopeptidase family, catalytic domain AMC99_00868 PF00334 Nucleoside diphosphate kinase AMC99_00871 PF00551 Formyl transferase AMC99_00872 PF02769 AIR synthase related protein, C-terminal domain AMC99_00872 PF00586 AIR synthase related protein, N-terminal domain AMC99_00875 PF00132 Bacterial transferase hexapeptide (six repeats) AMC99_00875 PF06426 Serine acetyltransferase, N-terminal AMC99_00877 PF00459 Inositol monophosphatase family AMC99_00879 PF00009 Elongation factor Tu GTP binding domain AMC99_00880 PF01507 Phosphoadenosine phosphosulfate reductase family AMC99_00881 PF02358 Trehalose-phosphatase AMC99_00882 PF00723 Glycosyl hydrolases family 15 AMC99_00883 PF00982 Glycosyltransferase family 20 AMC99_00884 PF00072 Response regulator receiver domain AMC99_00884 PF00486 Transcriptional regulatory protein, C terminal AMC99_00886 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMC99_00889 PF00291 Pyridoxal-phosphate dependent enzyme AMC99_00890 PF16653 Saccharopine dehydrogenase C-terminal domain AMC99_00890 PF03435 Saccharopine dehydrogenase NADP binding domain AMC99_00896 PF00881 Nitroreductase family AMC99_00897 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMC99_00899 PF00155 Aminotransferase class I and II AMC99_00900 PF01177 Asp/Glu/Hydantoin racemase AMC99_00901 PF02660 Glycerol-3-phosphate acyltransferase AMC99_00902 PF17782 DprA winged helix domain AMC99_00902 PF02481 DNA recombination-mediator protein A AMC99_00904 PF01131 DNA topoisomerase AMC99_00904 PF01396 Topoisomerase DNA binding C4 zinc finger AMC99_00904 PF13368 Topoisomerase C-terminal repeat AMC99_00904 PF01751 Toprim domain AMC99_00906 PF00072 Response regulator receiver domain AMC99_00909 PF07650 KH domain AMC99_00909 PF01926 50S ribosome-binding GTPase AMC99_00910 PF14622 Ribonuclease-III-like AMC99_00910 PF00035 Double-stranded RNA binding motif AMC99_00911 PF10502 Signal peptidase, peptidase S26 AMC99_00912 PF00342 Phosphoglucose isomerase AMC99_00915 PF00271 Helicase conserved C-terminal domain AMC99_00915 PF00270 DEAD/DEAH box helicase AMC99_00916 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMC99_00916 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMC99_00917 PF01370 NAD dependent epimerase/dehydratase family AMC99_00918 PF06114 IrrE N-terminal-like domain AMC99_00918 PF01381 Helix-turn-helix AMC99_00918 PF09856 Predicted transcriptional regulator (DUF2083) AMC99_00919 PF01039 Carboxyl transferase domain AMC99_00921 PF00378 Enoyl-CoA hydratase/isomerase AMC99_00922 PF02798 Glutathione S-transferase, N-terminal domain AMC99_00922 PF00043 Glutathione S-transferase, C-terminal domain AMC99_00924 PF04055 Radical SAM superfamily AMC99_00924 PF06968 Biotin and Thiamin Synthesis associated domain AMC99_00926 PF00364 Biotin-requiring enzyme AMC99_00926 PF02785 Biotin carboxylase C-terminal domain AMC99_00926 PF00289 Biotin carboxylase, N-terminal domain AMC99_00926 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMC99_00927 PF01588 Putative tRNA binding domain AMC99_00929 PF04199 Putative cyclase AMC99_00930 PF01761 3-dehydroquinate synthase AMC99_00931 PF01202 Shikimate kinase AMC99_00934 PF02899 Phage integrase, N-terminal SAM-like domain AMC99_00934 PF00589 Phage integrase family AMC99_00935 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMC99_00939 PF00293 NUDIX domain AMC99_00942 PF13396 Phospholipase_D-nuclease N-terminal AMC99_00942 PF13091 PLD-like domain AMC99_00943 PF01227 GTP cyclohydrolase I AMC99_00945 PF00462 Glutaredoxin AMC99_00945 PF08534 Redoxin AMC99_00946 PF05221 S-adenosyl-L-homocysteine hydrolase AMC99_00946 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMC99_00947 PF00512 His Kinase A (phospho-acceptor) domain AMC99_00947 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_00948 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMC99_00949 PF01636 Phosphotransferase enzyme family AMC99_00950 PF12804 MobA-like NTP transferase domain AMC99_00951 PF12705 PD-(D/E)XK nuclease superfamily AMC99_00952 PF12705 PD-(D/E)XK nuclease superfamily AMC99_00952 PF13361 UvrD-like helicase C-terminal domain AMC99_00952 PF00580 UvrD/REP helicase N-terminal domain AMC99_00953 PF00085 Thioredoxin AMC99_00954 PF00459 Inositol monophosphatase family AMC99_00955 PF01960 ArgJ family AMC99_00958 PF07516 SecA Wing and Scaffold domain AMC99_00958 PF01043 SecA preprotein cross-linking domain AMC99_00958 PF07517 SecA DEAD-like domain AMC99_00958 PF02810 SEC-C motif AMC99_00962 PF01513 ATP-NAD kinase AMC99_00963 PF00563 EAL domain AMC99_00963 PF01590 GAF domain AMC99_00963 PF00360 Phytochrome region AMC99_00963 PF00990 Diguanylate cyclase, GGDEF domain AMC99_00964 PF00271 Helicase conserved C-terminal domain AMC99_00964 PF00270 DEAD/DEAH box helicase AMC99_00964 PF02559 CarD-like/TRCF domain AMC99_00964 PF17757 UvrB interaction domain AMC99_00964 PF03461 TRCF domain AMC99_00967 PF00270 DEAD/DEAH box helicase AMC99_00967 PF17191 RecG wedge domain AMC99_00967 PF00271 Helicase conserved C-terminal domain AMC99_00968 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMC99_00969 PF01679 Proteolipid membrane potential modulator AMC99_00973 PF00303 Thymidylate synthase AMC99_00974 PF00676 Dehydrogenase E1 component AMC99_00974 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal AMC99_00975 PF02779 Transketolase, pyrimidine binding domain AMC99_00975 PF02780 Transketolase, C-terminal domain AMC99_00976 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMC99_00976 PF00364 Biotin-requiring enzyme AMC99_00976 PF02817 e3 binding domain AMC99_00979 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMC99_00982 PF02779 Transketolase, pyrimidine binding domain AMC99_00982 PF02780 Transketolase, C-terminal domain AMC99_00982 PF00456 Transketolase, thiamine diphosphate binding domain AMC99_00983 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMC99_00983 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMC99_00984 PF00162 Phosphoglycerate kinase AMC99_00986 PF00274 Fructose-bisphosphate aldolase class-I AMC99_00989 PF02581 Thiamine monophosphate synthase AMC99_00990 PF01476 LysM domain AMC99_00990 PF03734 L,D-transpeptidase catalytic domain AMC99_00991 PF01476 LysM domain AMC99_00991 PF01551 Peptidase family M23 AMC99_00993 PF09285 Elongation factor P, C-terminal AMC99_00993 PF08207 Elongation factor P (EF-P) KOW-like domain AMC99_00993 PF01132 Elongation factor P (EF-P) OB domain AMC99_00995 PF00459 Inositol monophosphatase family AMC99_00997 PF00924 Mechanosensitive ion channel AMC99_00997 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMC99_00997 PF12795 Mechanosensitive ion channel porin domain AMC99_00998 PF03600 Citrate transporter AMC99_00998 PF02080 TrkA-C domain AMC99_01001 PF00463 Isocitrate lyase family AMC99_01002 PF06114 IrrE N-terminal-like domain AMC99_01002 PF09856 Predicted transcriptional regulator (DUF2083) AMC99_01002 PF01381 Helix-turn-helix AMC99_01004 PF02397 Bacterial sugar transferase AMC99_01005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_01005 PF00512 His Kinase A (phospho-acceptor) domain AMC99_01005 PF00989 PAS fold AMC99_01006 PF00072 Response regulator receiver domain AMC99_01006 PF02954 Bacterial regulatory protein, Fis family AMC99_01006 PF00158 Sigma-54 interaction domain AMC99_01008 PF13593 SBF-like CPA transporter family (DUF4137) AMC99_01010 PF02548 Ketopantoate hydroxymethyltransferase AMC99_01011 PF00209 Sodium:neurotransmitter symporter family AMC99_01017 PF03167 Uracil DNA glycosylase superfamily AMC99_01018 PF01336 OB-fold nucleic acid binding domain AMC99_01018 PF02811 PHP domain AMC99_01018 PF14579 Helix-hairpin-helix motif AMC99_01018 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMC99_01018 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMC99_01020 PF07690 Major Facilitator Superfamily AMC99_01021 PF00486 Transcriptional regulatory protein, C terminal AMC99_01021 PF00072 Response regulator receiver domain AMC99_01022 PF01895 PhoU domain AMC99_01023 PF00005 ABC transporter AMC99_01024 PF00528 Binding-protein-dependent transport system inner membrane component AMC99_01025 PF00528 Binding-protein-dependent transport system inner membrane component AMC99_01028 PF07396 Phosphate-selective porin O and P AMC99_01029 PF00989 PAS fold AMC99_01029 PF00512 His Kinase A (phospho-acceptor) domain AMC99_01029 PF11808 Phosphate regulon sensor protein PhoR AMC99_01029 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_01031 PF01368 DHH family AMC99_01031 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AMC99_01031 PF17768 RecJ OB domain AMC99_01031 PF02272 DHHA1 domain AMC99_01040 PF00682 HMGL-like AMC99_01040 PF08502 LeuA allosteric (dimerisation) domain AMC99_01042 PF06441 Epoxide hydrolase N terminus AMC99_01043 PF01070 FMN-dependent dehydrogenase AMC99_01045 PF04264 YceI-like domain AMC99_01046 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMC99_01046 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMC99_01047 PF10369 Small subunit of acetolactate synthase AMC99_01048 PF00205 Thiamine pyrophosphate enzyme, central domain AMC99_01048 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMC99_01048 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMC99_01050 PF18429 Domain of unknown function (DUF5609) AMC99_01053 PF00586 AIR synthase related protein, N-terminal domain AMC99_01053 PF02769 AIR synthase related protein, C-terminal domain AMC99_01053 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMC99_01056 PF02609 Exonuclease VII small subunit AMC99_01057 PF00348 Polyprenyl synthetase AMC99_01058 PF01467 Cytidylyltransferase-like AMC99_01059 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMC99_01060 PF02547 Queuosine biosynthesis protein AMC99_01061 PF00005 ABC transporter AMC99_01062 PF01061 ABC-2 type transporter AMC99_01064 PF01702 Queuine tRNA-ribosyltransferase AMC99_01068 PF01479 S4 domain AMC99_01068 PF00163 Ribosomal protein S4/S9 N-terminal domain AMC99_01070 PF00588 SpoU rRNA Methylase family AMC99_01071 PF03477 ATP cone domain AMC99_01073 PF00464 Serine hydroxymethyltransferase AMC99_01074 PF02502 Ribose/Galactose Isomerase AMC99_01075 PF04545 Sigma-70, region 4 AMC99_01075 PF04546 Sigma-70, non-essential region AMC99_01075 PF03979 Sigma-70 factor, region 1.1 AMC99_01075 PF00140 Sigma-70 factor, region 1.2 AMC99_01075 PF04542 Sigma-70 region 2 AMC99_01075 PF04539 Sigma-70 region 3 AMC99_01076 PF08278 DNA primase DnaG DnaB-binding AMC99_01076 PF08275 DNA primase catalytic core, N-terminal domain AMC99_01076 PF01807 CHC2 zinc finger AMC99_01076 PF10410 DnaB-helicase binding domain of primase AMC99_01079 PF00117 Glutamine amidotransferase class-I AMC99_01079 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMC99_01080 PF02142 MGS-like domain AMC99_01080 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMC99_01080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMC99_01081 PF01272 Transcription elongation factor, GreA/GreB, C-term AMC99_01081 PF03449 Transcription elongation factor, N-terminal AMC99_01088 PF00113 Enolase, C-terminal TIM barrel domain AMC99_01088 PF03952 Enolase, N-terminal domain AMC99_01091 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMC99_01092 PF00925 GTP cyclohydrolase II AMC99_01092 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMC99_01095 PF01098 Cell cycle protein AMC99_01096 PF03717 Penicillin-binding Protein dimerisation domain AMC99_01096 PF00905 Penicillin binding protein transpeptidase domain AMC99_01098 PF04085 rod shape-determining protein MreC AMC99_01100 PF01119 DNA mismatch repair protein, C-terminal domain AMC99_01100 PF08676 MutL C terminal dimerisation domain AMC99_01104 PF01926 50S ribosome-binding GTPase AMC99_01104 PF06071 Protein of unknown function (DUF933) AMC99_01105 PF00106 short chain dehydrogenase AMC99_01106 PF01195 Peptidyl-tRNA hydrolase AMC99_01107 PF01386 Ribosomal L25p family AMC99_01107 PF14693 Ribosomal protein TL5, C-terminal domain AMC99_01113 PF02091 Glycyl-tRNA synthetase alpha subunit AMC99_01115 PF05746 DALR anticodon binding domain AMC99_01115 PF02092 Glycyl-tRNA synthetase beta subunit AMC99_01116 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMC99_01116 PF00391 PEP-utilising enzyme, mobile domain AMC99_01116 PF02896 PEP-utilising enzyme, TIM barrel domain AMC99_01119 PF01502 Phosphoribosyl-AMP cyclohydrolase AMC99_01120 PF13411 MerR HTH family regulatory protein AMC99_01121 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMC99_01121 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_01121 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_01121 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_01124 PF00291 Pyridoxal-phosphate dependent enzyme AMC99_01127 PF00579 tRNA synthetases class I (W and Y) AMC99_01127 PF01479 S4 domain AMC99_01129 PF07075 Protein of unknown function (DUF1343) AMC99_01130 PF01321 Creatinase/Prolidase N-terminal domain AMC99_01130 PF00557 Metallopeptidase family M24 AMC99_01133 PF12729 Four helix bundle sensory module for signal transduction AMC99_01133 PF00672 HAMP domain AMC99_01133 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMC99_01134 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMC99_01134 PF12729 Four helix bundle sensory module for signal transduction AMC99_01134 PF00672 HAMP domain AMC99_01135 PF00672 HAMP domain AMC99_01135 PF12729 Four helix bundle sensory module for signal transduction AMC99_01135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMC99_01136 PF00004 ATPase family associated with various cellular activities (AAA) AMC99_01136 PF01434 Peptidase family M41 AMC99_01136 PF17862 AAA+ lid domain AMC99_01141 PF00204 DNA gyrase B AMC99_01141 PF00986 DNA gyrase B subunit, carboxyl terminus AMC99_01141 PF01751 Toprim domain AMC99_01141 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_01143 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMC99_01144 PF02021 Uncharacterised protein family UPF0102 AMC99_01145 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMC99_01145 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMC99_01146 PF09335 SNARE associated Golgi protein AMC99_01147 PF00589 Phage integrase family AMC99_01147 PF02899 Phage integrase, N-terminal SAM-like domain AMC99_01148 PF04055 Radical SAM superfamily AMC99_01148 PF06969 HemN C-terminal domain AMC99_01150 PF01725 Ham1 family AMC99_01151 PF03725 3' exoribonuclease family, domain 2 AMC99_01151 PF01138 3' exoribonuclease family, domain 1 AMC99_01152 PF01628 HrcA protein C terminal domain AMC99_01153 PF01025 GrpE AMC99_01158 PF00012 Hsp70 protein AMC99_01159 PF00226 DnaJ domain AMC99_01159 PF01556 DnaJ C terminal domain AMC99_01159 PF00684 DnaJ central domain AMC99_01161 PF01734 Patatin-like phospholipase AMC99_01161 PF11856 Protein of unknown function (DUF3376) AMC99_01162 PF06745 KaiC AMC99_01162 PF18073 Rubredoxin metal binding domain AMC99_01165 PF08946 Osmosensory transporter coiled coil AMC99_01165 PF00083 Sugar (and other) transporter AMC99_01166 PF01168 Alanine racemase, N-terminal domain AMC99_01166 PF00842 Alanine racemase, C-terminal domain AMC99_01167 PF05233 PHB accumulation regulatory domain AMC99_01167 PF07879 PHB/PHA accumulation regulator DNA-binding domain AMC99_01168 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMC99_01168 PF03129 Anticodon binding domain AMC99_01169 PF00575 S1 RNA binding domain AMC99_01169 PF00773 RNB domain AMC99_01169 PF08461 Ribonuclease R winged-helix domain AMC99_01169 PF17876 Cold shock domain AMC99_01169 PF08206 Ribonuclease B OB domain AMC99_01171 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMC99_01171 PF00364 Biotin-requiring enzyme AMC99_01171 PF02817 e3 binding domain AMC99_01173 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMC99_01173 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMC99_01174 PF02254 TrkA-N domain AMC99_01174 PF00999 Sodium/hydrogen exchanger family AMC99_01176 PF13406 Transglycosylase SLT domain AMC99_01177 PF03330 Lytic transglycolase AMC99_01177 PF05036 Sporulation related domain AMC99_01178 PF00768 D-alanyl-D-alanine carboxypeptidase AMC99_01178 PF07943 Penicillin-binding protein 5, C-terminal domain AMC99_01179 PF02223 Thymidylate kinase AMC99_01180 PF09115 DNA polymerase III, delta subunit, C terminal AMC99_01181 PF09334 tRNA synthetases class I (M) AMC99_01182 PF01026 TatD related DNase AMC99_01183 PF12706 Beta-lactamase superfamily domain AMC99_01183 PF03099 Biotin/lipoate A/B protein ligase family AMC99_01185 PF03819 MazG nucleotide pyrophosphohydrolase domain AMC99_01186 PF16360 GTP-binding GTPase Middle Region AMC99_01186 PF01926 50S ribosome-binding GTPase AMC99_01186 PF13167 GTP-binding GTPase N-terminal AMC99_01187 PF17209 Hfq protein AMC99_01188 PF02954 Bacterial regulatory protein, Fis family AMC99_01188 PF00072 Response regulator receiver domain AMC99_01188 PF00158 Sigma-54 interaction domain AMC99_01189 PF00672 HAMP domain AMC99_01189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_01190 PF02954 Bacterial regulatory protein, Fis family AMC99_01190 PF00072 Response regulator receiver domain AMC99_01190 PF00158 Sigma-54 interaction domain AMC99_01191 PF00989 PAS fold AMC99_01191 PF00512 His Kinase A (phospho-acceptor) domain AMC99_01191 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_01192 PF01207 Dihydrouridine synthase (Dus) AMC99_01193 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMC99_01193 PF02542 YgbB family AMC99_01194 PF02464 Competence-damaged protein AMC99_01195 PF03364 Polyketide cyclase / dehydrase and lipid transport AMC99_01196 PF04055 Radical SAM superfamily AMC99_01196 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMC99_01197 PF00484 Carbonic anhydrase AMC99_01200 PF03989 DNA gyrase C-terminal domain, beta-propeller AMC99_01200 PF00521 DNA gyrase/topoisomerase IV, subunit A AMC99_01203 PF01134 Glucose inhibited division protein A AMC99_01209 PF02779 Transketolase, pyrimidine binding domain AMC99_01209 PF00364 Biotin-requiring enzyme AMC99_01209 PF02780 Transketolase, C-terminal domain AMC99_01210 PF00676 Dehydrogenase E1 component AMC99_01212 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_01212 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_01212 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_01213 PF00924 Mechanosensitive ion channel AMC99_01213 PF05552 Conserved TM helix AMC99_01214 PF07690 Major Facilitator Superfamily AMC99_01217 PF00795 Carbon-nitrogen hydrolase AMC99_01218 PF00462 Glutaredoxin AMC99_01219 PF00011 Hsp20/alpha crystallin family AMC99_01220 PF00117 Glutamine amidotransferase class-I AMC99_01220 PF06418 CTP synthase N-terminus AMC99_01222 PF00121 Triosephosphate isomerase AMC99_01224 PF00425 chorismate binding enzyme AMC99_01224 PF04715 Anthranilate synthase component I, N terminal region AMC99_01226 PF00561 alpha/beta hydrolase fold AMC99_01227 PF00117 Glutamine amidotransferase class-I AMC99_01228 PF00591 Glycosyl transferase family, a/b domain AMC99_01228 PF02885 Glycosyl transferase family, helical bundle domain AMC99_01229 PF00218 Indole-3-glycerol phosphate synthase AMC99_01230 PF01967 MoaC family AMC99_01231 PF03454 MoeA C-terminal region (domain IV) AMC99_01231 PF03453 MoeA N-terminal region (domain I and II) AMC99_01231 PF00994 Probable molybdopterin binding domain AMC99_01232 PF01726 LexA DNA binding domain AMC99_01232 PF00717 Peptidase S24-like AMC99_01233 PF03772 Competence protein AMC99_01233 PF00753 Metallo-beta-lactamase superfamily AMC99_01234 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMC99_01235 PF00285 Citrate synthase, C-terminal domain AMC99_01237 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_01237 PF00512 His Kinase A (phospho-acceptor) domain AMC99_01243 PF17770 Ribonuclease J C-terminal domain AMC99_01243 PF12706 Beta-lactamase superfamily domain AMC99_01243 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMC99_01244 PF03309 Type III pantothenate kinase AMC99_01246 PF00361 Proton-conducting membrane transporter AMC99_01247 PF00361 Proton-conducting membrane transporter AMC99_01247 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AMC99_01248 PF00361 Proton-conducting membrane transporter AMC99_01248 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMC99_01249 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMC99_01250 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMC99_01251 PF12838 4Fe-4S dicluster domain AMC99_01252 PF00146 NADH dehydrogenase AMC99_01253 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMC99_01253 PF00384 Molybdopterin oxidoreductase AMC99_01253 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AMC99_01255 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMC99_01255 PF10531 SLBB domain AMC99_01255 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMC99_01258 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMC99_01259 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMC99_01260 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMC99_01261 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMC99_01262 PF00171 Aldehyde dehydrogenase family AMC99_01263 PF02803 Thiolase, C-terminal domain AMC99_01263 PF00108 Thiolase, N-terminal domain AMC99_01267 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMC99_01267 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMC99_01268 PF00909 Ammonium Transporter Family AMC99_01273 PF00472 RF-1 domain AMC99_01273 PF03462 PCRF domain AMC99_01274 PF00578 AhpC/TSA family AMC99_01275 PF00912 Transglycosylase AMC99_01275 PF00905 Penicillin binding protein transpeptidase domain AMC99_01275 PF17092 Penicillin-binding protein OB-like domain AMC99_01276 PF01520 N-acetylmuramoyl-L-alanine amidase AMC99_01276 PF11741 AMIN domain AMC99_01277 PF12111 Polyribonucleotide phosphorylase C terminal AMC99_01277 PF00575 S1 RNA binding domain AMC99_01277 PF10150 Ribonuclease E/G family AMC99_01278 PF01209 ubiE/COQ5 methyltransferase family AMC99_01283 PF01943 Polysaccharide biosynthesis protein AMC99_01285 PF13085 2Fe-2S iron-sulfur cluster binding domain AMC99_01287 PF03969 AFG1-like ATPase AMC99_01288 PF17954 Quercetinase C-terminal cupin domain AMC99_01288 PF02678 Pirin AMC99_01290 PF00733 Asparagine synthase AMC99_01290 PF13537 Glutamine amidotransferase domain AMC99_01294 PF01522 Polysaccharide deacetylase AMC99_01295 PF13401 AAA domain AMC99_01295 PF01471 Putative peptidoglycan binding domain AMC99_01301 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMC99_01301 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMC99_01302 PF13193 AMP-binding enzyme C-terminal domain AMC99_01302 PF00668 Condensation domain AMC99_01302 PF00550 Phosphopantetheine attachment site AMC99_01302 PF00501 AMP-binding enzyme AMC99_01307 PF05958 tRNA (Uracil-5-)-methyltransferase AMC99_01308 PF03853 YjeF-related protein N-terminus AMC99_01308 PF01256 Carbohydrate kinase AMC99_01310 PF00920 Dehydratase family AMC99_01312 PF00288 GHMP kinases N terminal domain AMC99_01312 PF08544 GHMP kinases C terminal AMC99_01316 PF00994 Probable molybdopterin binding domain AMC99_01320 PF13193 AMP-binding enzyme C-terminal domain AMC99_01320 PF00501 AMP-binding enzyme AMC99_01322 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMC99_01322 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMC99_01322 PF14579 Helix-hairpin-helix motif AMC99_01322 PF02811 PHP domain AMC99_01323 PF04235 Protein of unknown function (DUF418) AMC99_01324 PF00255 Glutathione peroxidase AMC99_01326 PF00005 ABC transporter AMC99_01327 PF02687 FtsX-like permease family AMC99_01327 PF12704 MacB-like periplasmic core domain AMC99_01328 PF00156 Phosphoribosyl transferase domain AMC99_01328 PF13537 Glutamine amidotransferase domain AMC99_01329 PF00106 short chain dehydrogenase AMC99_01331 PF00144 Beta-lactamase AMC99_01333 PF03441 FAD binding domain of DNA photolyase AMC99_01333 PF00875 DNA photolyase AMC99_01335 PF01569 PAP2 superfamily AMC99_01336 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMC99_01337 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMC99_01337 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AMC99_01337 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AMC99_01338 PF07859 alpha/beta hydrolase fold AMC99_01339 PF00293 NUDIX domain AMC99_01341 PF01029 NusB family AMC99_01341 PF01189 16S rRNA methyltransferase RsmB/F AMC99_01342 PF00478 IMP dehydrogenase / GMP reductase domain AMC99_01342 PF00571 CBS domain AMC99_01345 PF04228 Putative neutral zinc metallopeptidase AMC99_01347 PF06123 Inner membrane protein CreD AMC99_01349 PF03965 Penicillinase repressor AMC99_01350 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMC99_01353 PF00890 FAD binding domain AMC99_01353 PF02910 Fumarate reductase flavoprotein C-term AMC99_01354 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMC99_01357 PF00753 Metallo-beta-lactamase superfamily AMC99_01359 PF00378 Enoyl-CoA hydratase/isomerase AMC99_01360 PF02464 Competence-damaged protein AMC99_01360 PF00994 Probable molybdopterin binding domain AMC99_01361 PF01653 NAD-dependent DNA ligase adenylation domain AMC99_01361 PF12826 Helix-hairpin-helix motif AMC99_01361 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMC99_01361 PF03120 NAD-dependent DNA ligase OB-fold domain AMC99_01361 PF00533 BRCA1 C Terminus (BRCT) domain AMC99_01363 PF02463 RecF/RecN/SMC N terminal domain AMC99_01363 PF13476 AAA domain AMC99_01364 PF13525 Outer membrane lipoprotein AMC99_01371 PF06421 GTP-binding protein LepA C-terminus AMC99_01371 PF00679 Elongation factor G C-terminus AMC99_01371 PF00009 Elongation factor Tu GTP binding domain AMC99_01372 PF08448 PAS fold AMC99_01372 PF08447 PAS fold AMC99_01372 PF00990 Diguanylate cyclase, GGDEF domain AMC99_01372 PF00563 EAL domain AMC99_01373 PF13188 PAS domain AMC99_01373 PF03707 Bacterial signalling protein N terminal repeat AMC99_01373 PF00990 Diguanylate cyclase, GGDEF domain AMC99_01373 PF00563 EAL domain AMC99_01374 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AMC99_01375 PF00561 alpha/beta hydrolase fold AMC99_01376 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMC99_01378 PF00561 alpha/beta hydrolase fold AMC99_01379 PF07969 Amidohydrolase family AMC99_01380 PF00107 Zinc-binding dehydrogenase AMC99_01380 PF08240 Alcohol dehydrogenase GroES-like domain AMC99_01382 PF02767 DNA polymerase III beta subunit, central domain AMC99_01382 PF02768 DNA polymerase III beta subunit, C-terminal domain AMC99_01382 PF00712 DNA polymerase III beta subunit, N-terminal domain AMC99_01385 PF00698 Acyl transferase domain AMC99_01386 PF02016 LD-carboxypeptidase N-terminal domain AMC99_01386 PF17676 LD-carboxypeptidase C-terminal domain AMC99_01387 PF08245 Mur ligase middle domain AMC99_01387 PF01225 Mur ligase family, catalytic domain AMC99_01387 PF02875 Mur ligase family, glutamate ligase domain AMC99_01389 PF05661 Protein of unknown function (DUF808) AMC99_01390 PF01250 Ribosomal protein S6 AMC99_01391 PF01084 Ribosomal protein S18 AMC99_01392 PF03948 Ribosomal protein L9, C-terminal domain AMC99_01392 PF01281 Ribosomal protein L9, N-terminal domain AMC99_01394 PF01048 Phosphorylase superfamily AMC99_01394 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus AMC99_01396 PF13426 PAS domain AMC99_01396 PF07536 HWE histidine kinase AMC99_01396 PF13581 Histidine kinase-like ATPase domain AMC99_01397 PF08443 RimK-like ATP-grasp domain AMC99_01397 PF18030 RimK PreATP-grasp domain AMC99_01398 PF18030 RimK PreATP-grasp domain AMC99_01398 PF08443 RimK-like ATP-grasp domain AMC99_01405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMC99_01405 PF00529 HlyD membrane-fusion protein of T1SS AMC99_01406 PF07690 Major Facilitator Superfamily AMC99_01408 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMC99_01408 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMC99_01409 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMC99_01409 PF00326 Prolyl oligopeptidase family AMC99_01410 PF01245 Ribosomal protein L19 AMC99_01411 PF01746 tRNA (Guanine-1)-methyltransferase AMC99_01412 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMC99_01414 PF01782 RimM N-terminal domain AMC99_01414 PF05239 PRC-barrel domain AMC99_01415 PF00886 Ribosomal protein S16 AMC99_01416 PF02978 Signal peptide binding domain AMC99_01416 PF02881 SRP54-type protein, helical bundle domain AMC99_01416 PF00448 SRP54-type protein, GTPase domain AMC99_01419 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMC99_01421 PF02224 Cytidylate kinase AMC99_01422 PF09997 Predicted membrane protein (DUF2238) AMC99_01424 PF00575 S1 RNA binding domain AMC99_01425 PF00753 Metallo-beta-lactamase superfamily AMC99_01425 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMC99_01426 PF08240 Alcohol dehydrogenase GroES-like domain AMC99_01426 PF00698 Acyl transferase domain AMC99_01426 PF02801 Beta-ketoacyl synthase, C-terminal domain AMC99_01426 PF00550 Phosphopantetheine attachment site AMC99_01426 PF00109 Beta-ketoacyl synthase, N-terminal domain AMC99_01426 PF16197 Ketoacyl-synthetase C-terminal extension AMC99_01426 PF14765 Polyketide synthase dehydratase AMC99_01426 PF08659 KR domain AMC99_01427 PF00430 ATP synthase B/B' CF(0) AMC99_01428 PF00430 ATP synthase B/B' CF(0) AMC99_01429 PF00137 ATP synthase subunit C AMC99_01430 PF00119 ATP synthase A chain AMC99_01436 PF04002 RadC-like JAB domain AMC99_01437 PF10397 Adenylosuccinate lyase C-terminus AMC99_01437 PF00206 Lyase AMC99_01439 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMC99_01440 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMC99_01441 PF00291 Pyridoxal-phosphate dependent enzyme AMC99_01443 PF00290 Tryptophan synthase alpha chain AMC99_01444 PF17848 Acetyl-coA carboxylase zinc finger domain AMC99_01444 PF01039 Carboxyl transferase domain AMC99_01445 PF08245 Mur ligase middle domain AMC99_01445 PF02875 Mur ligase family, glutamate ligase domain AMC99_01446 PF07690 Major Facilitator Superfamily AMC99_01447 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMC99_01447 PF00355 Rieske [2Fe-2S] domain AMC99_01448 PF01479 S4 domain AMC99_01448 PF00849 RNA pseudouridylate synthase AMC99_01452 PF00580 UvrD/REP helicase N-terminal domain AMC99_01452 PF13361 UvrD-like helicase C-terminal domain AMC99_01453 PF00271 Helicase conserved C-terminal domain AMC99_01453 PF00270 DEAD/DEAH box helicase AMC99_01455 PF01565 FAD binding domain AMC99_01455 PF02913 FAD linked oxidases, C-terminal domain AMC99_01458 PF00072 Response regulator receiver domain AMC99_01460 PF00180 Isocitrate/isopropylmalate dehydrogenase AMC99_01461 PF00583 Acetyltransferase (GNAT) family AMC99_01461 PF00795 Carbon-nitrogen hydrolase AMC99_01462 PF00474 Sodium:solute symporter family AMC99_01463 PF02254 TrkA-N domain AMC99_01463 PF00999 Sodium/hydrogen exchanger family AMC99_01465 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMC99_01465 PF01411 tRNA synthetases class II (A) AMC99_01465 PF02272 DHHA1 domain AMC99_01466 PF13649 Methyltransferase domain AMC99_01467 PF00154 recA bacterial DNA recombination protein AMC99_01468 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_01468 PF00072 Response regulator receiver domain AMC99_01468 PF13188 PAS domain AMC99_01468 PF08448 PAS fold AMC99_01468 PF00512 His Kinase A (phospho-acceptor) domain AMC99_01470 PF01668 SmpB protein AMC99_01471 PF00701 Dihydrodipicolinate synthetase family AMC99_01472 PF01464 Transglycosylase SLT domain AMC99_01472 PF14718 Soluble lytic murein transglycosylase L domain AMC99_01473 PF03449 Transcription elongation factor, N-terminal AMC99_01473 PF01272 Transcription elongation factor, GreA/GreB, C-term AMC99_01476 PF04055 Radical SAM superfamily AMC99_01477 PF03848 Tellurite resistance protein TehB AMC99_01477 PF09313 Domain of unknown function (DUF1971) AMC99_01478 PF03475 3-alpha domain AMC99_01478 PF03473 MOSC domain AMC99_01480 PF02567 Phenazine biosynthesis-like protein AMC99_01482 PF01292 Prokaryotic cytochrome b561 AMC99_01483 PF00174 Oxidoreductase molybdopterin binding domain AMC99_01486 PF00764 Arginosuccinate synthase AMC99_01487 PF03330 Lytic transglycolase AMC99_01492 PF16320 Ribosomal protein L7/L12 dimerisation domain AMC99_01492 PF00542 Ribosomal protein L7/L12 C-terminal domain AMC99_01494 PF17755 UvrA DNA-binding domain AMC99_01494 PF17760 UvrA interaction domain AMC99_01498 PF01432 Peptidase family M3 AMC99_01499 PF00005 ABC transporter AMC99_01500 PF01032 FecCD transport family AMC99_01504 PF00563 EAL domain AMC99_01504 PF03707 Bacterial signalling protein N terminal repeat AMC99_01504 PF13188 PAS domain AMC99_01504 PF00990 Diguanylate cyclase, GGDEF domain AMC99_01505 PF00056 lactate/malate dehydrogenase, NAD binding domain AMC99_01505 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMC99_01506 PF00549 CoA-ligase AMC99_01506 PF02629 CoA binding domain AMC99_01507 PF16870 2-oxoglutarate dehydrogenase C-terminal AMC99_01507 PF00676 Dehydrogenase E1 component AMC99_01507 PF02779 Transketolase, pyrimidine binding domain AMC99_01507 PF16078 2-oxoglutarate dehydrogenase N-terminus AMC99_01508 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMC99_01508 PF00364 Biotin-requiring enzyme AMC99_01508 PF02817 e3 binding domain AMC99_01509 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMC99_01509 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMC99_01514 PF00144 Beta-lactamase AMC99_01514 PF11954 Domain of unknown function (DUF3471) AMC99_01515 PF01425 Amidase AMC99_01516 PF03458 UPF0126 domain AMC99_01519 PF01196 Ribosomal protein L17 AMC99_01520 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMC99_01520 PF01000 RNA polymerase Rpb3/RpoA insert domain AMC99_01520 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMC99_01521 PF00411 Ribosomal protein S11 AMC99_01522 PF00416 Ribosomal protein S13/S18 AMC99_01524 PF05191 Adenylate kinase, active site lid AMC99_01525 PF00344 SecY translocase AMC99_01526 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMC99_01528 PF00327 Ribosomal protein L30p/L7e AMC99_01529 PF00333 Ribosomal protein S5, N-terminal domain AMC99_01529 PF03719 Ribosomal protein S5, C-terminal domain AMC99_01530 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMC99_01531 PF00347 Ribosomal protein L6 AMC99_01532 PF00410 Ribosomal protein S8 AMC99_01533 PF00253 Ribosomal protein S14p/S29e AMC99_01534 PF00673 ribosomal L5P family C-terminus AMC99_01534 PF00281 Ribosomal protein L5 AMC99_01535 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMC99_01535 PF00467 KOW motif AMC99_01536 PF00238 Ribosomal protein L14p/L23e AMC99_01537 PF00366 Ribosomal protein S17 AMC99_01538 PF00831 Ribosomal L29 protein AMC99_01539 PF00252 Ribosomal protein L16p/L10e AMC99_01540 PF07650 KH domain AMC99_01540 PF00189 Ribosomal protein S3, C-terminal domain AMC99_01541 PF00237 Ribosomal protein L22p/L17e AMC99_01542 PF00203 Ribosomal protein S19 AMC99_01543 PF00181 Ribosomal Proteins L2, RNA binding domain AMC99_01543 PF03947 Ribosomal Proteins L2, C-terminal domain AMC99_01544 PF00276 Ribosomal protein L23 AMC99_01545 PF00573 Ribosomal protein L4/L1 family AMC99_01546 PF00297 Ribosomal protein L3 AMC99_01547 PF00338 Ribosomal protein S10p/S20e AMC99_01548 PF00009 Elongation factor Tu GTP binding domain AMC99_01548 PF03144 Elongation factor Tu domain 2 AMC99_01548 PF03143 Elongation factor Tu C-terminal domain AMC99_01549 PF00009 Elongation factor Tu GTP binding domain AMC99_01549 PF03764 Elongation factor G, domain IV AMC99_01549 PF14492 Elongation Factor G, domain II AMC99_01549 PF03144 Elongation factor Tu domain 2 AMC99_01549 PF00679 Elongation factor G C-terminus AMC99_01550 PF00177 Ribosomal protein S7p/S5e AMC99_01551 PF00164 Ribosomal protein S12/S23 AMC99_01557 PF00664 ABC transporter transmembrane region AMC99_01557 PF00005 ABC transporter AMC99_01557 PF03412 Peptidase C39 family AMC99_01558 PF02321 Outer membrane efflux protein AMC99_01563 PF00263 Bacterial type II and III secretion system protein AMC99_01563 PF04972 BON domain AMC99_01563 PF13629 Pilus formation protein N terminal region AMC99_01569 PF00437 Type II/IV secretion system protein AMC99_01575 PF03466 LysR substrate binding domain AMC99_01575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMC99_01576 PF04379 ApaG domain AMC99_01577 PF01323 DSBA-like thioredoxin domain AMC99_01581 PF01053 Cys/Met metabolism PLP-dependent enzyme AMC99_01582 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase AMC99_01582 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AMC99_01584 PF00180 Isocitrate/isopropylmalate dehydrogenase AMC99_01585 PF11967 Recombination protein O N terminal AMC99_01585 PF02565 Recombination protein O C terminal AMC99_01588 PF01479 S4 domain AMC99_01588 PF01728 FtsJ-like methyltransferase AMC99_01590 PF01063 Amino-transferase class IV AMC99_01593 PF00795 Carbon-nitrogen hydrolase AMC99_01593 PF02540 NAD synthase AMC99_01595 PF02798 Glutathione S-transferase, N-terminal domain AMC99_01598 PF10017 Histidine-specific methyltransferase, SAM-dependent AMC99_01599 PF03781 Sulfatase-modifying factor enzyme 1 AMC99_01599 PF12867 DinB superfamily AMC99_01600 PF00072 Response regulator receiver domain AMC99_01600 PF00990 Diguanylate cyclase, GGDEF domain AMC99_01601 PF01474 Class-II DAHP synthetase family AMC99_01602 PF00675 Insulinase (Peptidase family M16) AMC99_01602 PF05193 Peptidase M16 inactive domain AMC99_01603 PF01106 NifU-like domain AMC99_01604 PF00881 Nitroreductase family AMC99_01605 PF00814 Glycoprotease family AMC99_01606 PF13673 Acetyltransferase (GNAT) domain AMC99_01607 PF05443 ROS/MUCR transcriptional regulator protein AMC99_01608 PF01475 Ferric uptake regulator family AMC99_01610 PF03466 LysR substrate binding domain AMC99_01610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMC99_01611 PF03471 Transporter associated domain AMC99_01611 PF00571 CBS domain AMC99_01612 PF02130 Uncharacterized protein family UPF0054 AMC99_01614 PF02562 PhoH-like protein AMC99_01616 PF01938 TRAM domain AMC99_01616 PF00919 Uncharacterized protein family UPF0004 AMC99_01616 PF04055 Radical SAM superfamily AMC99_01619 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMC99_01620 PF03448 MgtE intracellular N domain AMC99_01620 PF00571 CBS domain AMC99_01620 PF01769 Divalent cation transporter AMC99_01622 PF01323 DSBA-like thioredoxin domain AMC99_01623 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMC99_01623 PF09297 NADH pyrophosphatase zinc ribbon domain AMC99_01623 PF00293 NUDIX domain AMC99_01624 PF00144 Beta-lactamase AMC99_01626 PF00633 Helix-hairpin-helix motif AMC99_01626 PF00730 HhH-GPD superfamily base excision DNA repair protein AMC99_01626 PF14815 NUDIX domain AMC99_01630 PF02463 RecF/RecN/SMC N terminal domain AMC99_01632 PF13411 MerR HTH family regulatory protein AMC99_01633 PF00216 Bacterial DNA-binding protein AMC99_01634 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMC99_01634 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMC99_01635 PF02504 Fatty acid synthesis protein AMC99_01637 PF00753 Metallo-beta-lactamase superfamily AMC99_01642 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMC99_01642 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMC99_01644 PF01406 tRNA synthetases class I (C) catalytic domain AMC99_01648 PF11775 Cobalamin biosynthesis protein CobT VWA domain AMC99_01648 PF06213 Cobalamin biosynthesis protein CobT AMC99_01649 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMC99_01651 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMC99_01651 PF00270 DEAD/DEAH box helicase AMC99_01651 PF17764 3′ DNA-binding domain (3′BD) AMC99_01651 PF18074 Primosomal protein N C-terminal domain AMC99_01652 PF01638 HxlR-like helix-turn-helix AMC99_01653 PF02525 Flavodoxin-like fold AMC99_01654 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AMC99_01657 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMC99_01657 PF12833 Helix-turn-helix domain AMC99_01657 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMC99_01657 PF02805 Metal binding domain of Ada AMC99_01658 PF02674 Colicin V production protein AMC99_01659 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMC99_01660 PF00213 ATP synthase delta (OSCP) subunit AMC99_01662 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMC99_01662 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMC99_01662 PF00306 ATP synthase alpha/beta chain, C terminal domain AMC99_01663 PF00231 ATP synthase AMC99_01664 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMC99_01664 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMC99_01665 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMC99_01669 PF00326 Prolyl oligopeptidase family AMC99_01669 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMC99_01672 PF00132 Bacterial transferase hexapeptide (six repeats) AMC99_01672 PF14602 Hexapeptide repeat of succinyl-transferase AMC99_01672 PF12804 MobA-like NTP transferase domain AMC99_01673 PF13419 Haloacid dehalogenase-like hydrolase AMC99_01674 PF00106 short chain dehydrogenase AMC99_01677 PF02780 Transketolase, C-terminal domain AMC99_01677 PF02779 Transketolase, pyrimidine binding domain AMC99_01678 PF02033 Ribosome-binding factor A AMC99_01681 PF00009 Elongation factor Tu GTP binding domain AMC99_01681 PF08364 Bacterial translation initiation factor IF-2 associated region AMC99_01681 PF04760 Translation initiation factor IF-2, N-terminal region AMC99_01681 PF11987 Translation-initiation factor 2 AMC99_01683 PF13184 NusA-like KH domain AMC99_01683 PF08529 NusA N-terminal domain AMC99_01683 PF00575 S1 RNA binding domain AMC99_01684 PF17384 RimP C-terminal SH3 domain AMC99_01684 PF02576 RimP N-terminal domain AMC99_01685 PF00082 Subtilase family AMC99_01685 PF05922 Peptidase inhibitor I9 AMC99_01686 PF03958 Bacterial type II/III secretion system short domain AMC99_01686 PF00263 Bacterial type II and III secretion system protein AMC99_01688 PF02954 Bacterial regulatory protein, Fis family AMC99_01688 PF00158 Sigma-54 interaction domain AMC99_01690 PF04012 PspA/IM30 family AMC99_01698 PF02657 Fe-S metabolism associated domain AMC99_01700 PF04116 Fatty acid hydroxylase superfamily AMC99_01704 PF00330 Aconitase family (aconitate hydratase) AMC99_01706 PF00694 Aconitase C-terminal domain AMC99_01707 PF02801 Beta-ketoacyl synthase, C-terminal domain AMC99_01707 PF08240 Alcohol dehydrogenase GroES-like domain AMC99_01707 PF14765 Polyketide synthase dehydratase AMC99_01707 PF00698 Acyl transferase domain AMC99_01707 PF16197 Ketoacyl-synthetase C-terminal extension AMC99_01707 PF08659 KR domain AMC99_01707 PF00109 Beta-ketoacyl synthase, N-terminal domain AMC99_01707 PF00550 Phosphopantetheine attachment site AMC99_01707 PF00107 Zinc-binding dehydrogenase AMC99_01710 PF00462 Glutaredoxin AMC99_01714 PF02541 Ppx/GppA phosphatase family AMC99_01715 PF02503 Polyphosphate kinase middle domain AMC99_01715 PF13090 Polyphosphate kinase C-terminal domain 2 AMC99_01715 PF17941 Polyphosphate kinase C-terminal domain 1 AMC99_01715 PF13089 Polyphosphate kinase N-terminal domain AMC99_01716 PF00248 Aldo/keto reductase family AMC99_01718 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_01718 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_01718 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_01719 PF00999 Sodium/hydrogen exchanger family AMC99_01720 PF01259 SAICAR synthetase AMC99_01722 PF00675 Insulinase (Peptidase family M16) AMC99_01722 PF05193 Peptidase M16 inactive domain AMC99_01723 PF07715 TonB-dependent Receptor Plug Domain AMC99_01723 PF00593 TonB dependent receptor AMC99_01724 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AMC99_01726 PF00990 Diguanylate cyclase, GGDEF domain AMC99_01726 PF03707 Bacterial signalling protein N terminal repeat AMC99_01726 PF00563 EAL domain AMC99_01727 PF01380 SIS domain AMC99_01728 PF00892 EamA-like transporter family AMC99_01729 PF00535 Glycosyl transferase family 2 AMC99_01733 PF00534 Glycosyl transferases group 1 AMC99_01734 PF00437 Type II/IV secretion system protein AMC99_01738 PF13193 AMP-binding enzyme C-terminal domain AMC99_01738 PF00501 AMP-binding enzyme AMC99_01740 PF01758 Sodium Bile acid symporter family AMC99_01741 PF05173 Dihydrodipicolinate reductase, C-terminus AMC99_01741 PF01113 Dihydrodipicolinate reductase, N-terminus AMC99_01742 PF01966 HD domain AMC99_01742 PF13286 Phosphohydrolase-associated domain AMC99_01743 PF01177 Asp/Glu/Hydantoin racemase AMC99_01746 PF02233 NAD(P) transhydrogenase beta subunit AMC99_01747 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMC99_01749 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMC99_01749 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMC99_01751 PF00158 Sigma-54 interaction domain AMC99_01751 PF00072 Response regulator receiver domain AMC99_01751 PF02954 Bacterial regulatory protein, Fis family AMC99_01753 PF00809 Pterin binding enzyme AMC99_01754 PF01555 DNA methylase AMC99_01754 PF18755 Restriction Enzyme Adenine Methylase Associated AMC99_01756 PF01699 Sodium/calcium exchanger protein AMC99_01757 PF01351 Ribonuclease HII AMC99_01758 PF07995 Glucose / Sorbosone dehydrogenase AMC99_01761 PF00293 NUDIX domain AMC99_01762 PF01743 Poly A polymerase head domain AMC99_01762 PF12626 Polymerase A arginine-rich C-terminus AMC99_01762 PF12627 Probable RNA and SrmB- binding site of polymerase A AMC99_01766 PF03989 DNA gyrase C-terminal domain, beta-propeller AMC99_01766 PF00521 DNA gyrase/topoisomerase IV, subunit A AMC99_01767 PF01965 DJ-1/PfpI family AMC99_01768 PF00111 2Fe-2S iron-sulfur cluster binding domain AMC99_01769 PF00266 Aminotransferase class-V AMC99_01770 PF00266 Aminotransferase class-V AMC99_01771 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMC99_01776 PF01293 Phosphoenolpyruvate carboxykinase AMC99_01777 PF00486 Transcriptional regulatory protein, C terminal AMC99_01777 PF00072 Response regulator receiver domain AMC99_01778 PF13756 Stimulus-sensing domain AMC99_01778 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_01778 PF00672 HAMP domain AMC99_01778 PF13755 Sensor N-terminal transmembrane domain AMC99_01778 PF00512 His Kinase A (phospho-acceptor) domain AMC99_01779 PF02603 HPr Serine kinase N terminus AMC99_01779 PF07475 HPr Serine kinase C-terminal domain AMC99_01780 PF03668 P-loop ATPase protein family AMC99_01781 PF03610 PTS system fructose IIA component AMC99_01781 PF03830 PTS system sorbose subfamily IIB component AMC99_01782 PF00381 PTS HPr component phosphorylation site AMC99_01783 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMC99_01783 PF00588 SpoU rRNA Methylase family AMC99_01785 PF02646 RmuC family AMC99_01787 PF01327 Polypeptide deformylase AMC99_01788 PF13662 Toprim domain AMC99_01788 PF02132 RecR protein AMC99_01789 PF02911 Formyl transferase, C-terminal domain AMC99_01789 PF00551 Formyl transferase AMC99_01791 PF01416 tRNA pseudouridine synthase AMC99_01793 PF00710 Asparaginase, N-terminal AMC99_01793 PF17763 Glutaminase/Asparaginase C-terminal domain AMC99_01796 PF00085 Thioredoxin AMC99_01797 PF00206 Lyase AMC99_01797 PF14698 Argininosuccinate lyase C-terminal AMC99_01799 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMC99_01799 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMC99_01800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMC99_01800 PF10414 Sirohaem synthase dimerisation region AMC99_01803 PF00709 Adenylosuccinate synthetase AMC99_01806 PF00248 Aldo/keto reductase family AMC99_01809 PF13393 Histidyl-tRNA synthetase AMC99_01810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMC99_01810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMC99_01810 PF01842 ACT domain AMC99_01812 PF13439 Glycosyltransferase Family 4 AMC99_01812 PF00534 Glycosyl transferases group 1 AMC99_01815 PF03551 Transcriptional regulator PadR-like family AMC99_01817 PF00004 ATPase family associated with various cellular activities (AAA) AMC99_01817 PF16193 AAA C-terminal domain AMC99_01817 PF12002 MgsA AAA+ ATPase C terminal AMC99_01821 PF00145 C-5 cytosine-specific DNA methylase AMC99_01835 PF14489 QueF-like protein AMC99_01838 PF00581 Rhodanese-like domain AMC99_01839 PF01053 Cys/Met metabolism PLP-dependent enzyme AMC99_01840 PF05552 Conserved TM helix AMC99_01840 PF00924 Mechanosensitive ion channel AMC99_01841 PF14824 Sirohaem biosynthesis protein central AMC99_01841 PF10414 Sirohaem synthase dimerisation region AMC99_01841 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMC99_01845 PF01507 Phosphoadenosine phosphosulfate reductase family AMC99_01847 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMC99_01848 PF00696 Amino acid kinase family AMC99_01848 PF01472 PUA domain AMC99_01849 PF01926 50S ribosome-binding GTPase AMC99_01849 PF01018 GTP1/OBG AMC99_01850 PF00593 TonB dependent receptor AMC99_01850 PF07715 TonB-dependent Receptor Plug Domain AMC99_01854 PF01027 Inhibitor of apoptosis-promoting Bax1 AMC99_01855 PF03807 NADP oxidoreductase coenzyme F420-dependent AMC99_01855 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMC99_01858 PF00091 Tubulin/FtsZ family, GTPase domain AMC99_01858 PF12327 FtsZ family, C-terminal domain AMC99_01859 PF02491 SHS2 domain inserted in FTSA AMC99_01860 PF03799 Cell division protein FtsQ AMC99_01860 PF08478 POTRA domain, FtsQ-type AMC99_01861 PF07478 D-ala D-ala ligase C-terminus AMC99_01861 PF01820 D-ala D-ala ligase N-terminus AMC99_01863 PF01565 FAD binding domain AMC99_01863 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMC99_01864 PF08245 Mur ligase middle domain AMC99_01864 PF01225 Mur ligase family, catalytic domain AMC99_01864 PF02875 Mur ligase family, glutamate ligase domain AMC99_01865 PF04101 Glycosyltransferase family 28 C-terminal domain AMC99_01865 PF03033 Glycosyltransferase family 28 N-terminal domain AMC99_01866 PF01098 Cell cycle protein AMC99_01867 PF02875 Mur ligase family, glutamate ligase domain AMC99_01867 PF08245 Mur ligase middle domain AMC99_01868 PF00953 Glycosyl transferase family 4 AMC99_01868 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMC99_01869 PF01225 Mur ligase family, catalytic domain AMC99_01869 PF02875 Mur ligase family, glutamate ligase domain AMC99_01869 PF08245 Mur ligase middle domain AMC99_01870 PF08245 Mur ligase middle domain AMC99_01870 PF01225 Mur ligase family, catalytic domain AMC99_01870 PF02875 Mur ligase family, glutamate ligase domain AMC99_01871 PF03717 Penicillin-binding Protein dimerisation domain AMC99_01871 PF00905 Penicillin binding protein transpeptidase domain AMC99_01873 PF01795 MraW methylase family AMC99_01874 PF02381 MraZ protein, putative antitoxin-like AMC99_01877 PF00291 Pyridoxal-phosphate dependent enzyme AMC99_01878 PF00111 2Fe-2S iron-sulfur cluster binding domain AMC99_01880 PF00326 Prolyl oligopeptidase family AMC99_01881 PF00106 short chain dehydrogenase AMC99_01882 PF01329 Pterin 4 alpha carbinolamine dehydratase AMC99_01883 PF13520 Amino acid permease AMC99_01884 PF00005 ABC transporter AMC99_01885 PF03379 CcmB protein AMC99_01886 PF00557 Metallopeptidase family M24 AMC99_01888 PF02789 Cytosol aminopeptidase family, N-terminal domain AMC99_01888 PF00883 Cytosol aminopeptidase family, catalytic domain AMC99_01890 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMC99_01892 PF00543 Nitrogen regulatory protein P-II AMC99_01893 PF00120 Glutamine synthetase, catalytic domain AMC99_01893 PF03951 Glutamine synthetase, beta-Grasp domain AMC99_01902 PF01103 Surface antigen AMC99_01902 PF07244 Surface antigen variable number repeat AMC99_01902 PF17243 POTRA domain TamA domain 1 AMC99_01903 PF04377 Arginine-tRNA-protein transferase, C terminus AMC99_01903 PF04376 Arginine-tRNA-protein transferase, N terminus AMC99_01904 PF13291 ACT domain AMC99_01904 PF00291 Pyridoxal-phosphate dependent enzyme AMC99_01905 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMC99_01905 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMC99_01906 PF07969 Amidohydrolase family AMC99_01908 PF00902 Sec-independent protein translocase protein (TatC) AMC99_01909 PF02416 mttA/Hcf106 family AMC99_01910 PF02416 mttA/Hcf106 family AMC99_01911 PF04079 Segregation and condensation complex subunit ScpB AMC99_01912 PF02616 Segregation and condensation protein ScpA AMC99_01913 PF00933 Glycosyl hydrolase family 3 N terminal domain AMC99_01915 PF00133 tRNA synthetases class I (I, L, M and V) AMC99_01915 PF05746 DALR anticodon binding domain AMC99_01915 PF03485 Arginyl tRNA synthetase N terminal domain AMC99_01915 PF00750 tRNA synthetases class I (R) AMC99_01917 PF02401 LytB protein AMC99_01918 PF01636 Phosphotransferase enzyme family AMC99_01919 PF00075 RNase H AMC99_01920 PF07411 Domain of unknown function (DUF1508) AMC99_01921 PF01266 FAD dependent oxidoreductase AMC99_01925 PF04972 BON domain AMC99_01925 PF00263 Bacterial type II and III secretion system protein AMC99_01925 PF13629 Pilus formation protein N terminal region AMC99_01931 PF00378 Enoyl-CoA hydratase/isomerase AMC99_01933 PF00171 Aldehyde dehydrogenase family AMC99_01935 PF00106 short chain dehydrogenase AMC99_01936 PF02803 Thiolase, C-terminal domain AMC99_01936 PF00108 Thiolase, N-terminal domain AMC99_01938 PF00593 TonB dependent receptor AMC99_01939 PF13181 Tetratricopeptide repeat AMC99_01940 PF10431 C-terminal, D2-small domain, of ClpB protein AMC99_01940 PF02861 Clp amino terminal domain, pathogenicity island component AMC99_01940 PF17871 AAA lid domain AMC99_01940 PF07724 AAA domain (Cdc48 subfamily) AMC99_01940 PF00004 ATPase family associated with various cellular activities (AAA) AMC99_01941 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_01941 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_01941 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_01943 PF01804 Penicillin amidase AMC99_01945 PF12833 Helix-turn-helix domain AMC99_01952 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMC99_01952 PF00672 HAMP domain AMC99_01952 PF12729 Four helix bundle sensory module for signal transduction AMC99_01954 PF00588 SpoU rRNA Methylase family AMC99_01956 PF02637 GatB domain AMC99_01956 PF02934 GatB/GatE catalytic domain AMC99_01958 PF00534 Glycosyl transferases group 1 AMC99_01958 PF13477 Glycosyl transferase 4-like AMC99_01959 PF01425 Amidase AMC99_01960 PF02686 Glu-tRNAGln amidotransferase C subunit AMC99_01962 PF01165 Ribosomal protein S21 AMC99_01963 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMC99_01964 PF00849 RNA pseudouridylate synthase AMC99_01964 PF01479 S4 domain AMC99_01966 PF13419 Haloacid dehalogenase-like hydrolase AMC99_01971 PF00005 ABC transporter AMC99_01972 PF02405 Permease MlaE AMC99_01973 PF00133 tRNA synthetases class I (I, L, M and V) AMC99_01973 PF10458 Valyl tRNA synthetase tRNA binding arm AMC99_01973 PF08264 Anticodon-binding domain of tRNA AMC99_01977 PF01925 Sulfite exporter TauE/SafE AMC99_01979 PF13632 Glycosyl transferase family group 2 AMC99_01979 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMC99_01980 PF06965 Na+/H+ antiporter 1 AMC99_01985 PF00149 Calcineurin-like phosphoesterase AMC99_01986 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMC99_01986 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMC99_01986 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMC99_01989 PF10090 Histidine phosphotransferase C-terminal domain AMC99_01991 PF00849 RNA pseudouridylate synthase AMC99_01992 PF04545 Sigma-70, region 4 AMC99_01992 PF04542 Sigma-70 region 2 AMC99_01992 PF00140 Sigma-70 factor, region 1.2 AMC99_01993 PF00912 Transglycosylase AMC99_01994 PF01545 Cation efflux family AMC99_01995 PF01522 Polysaccharide deacetylase AMC99_01996 PF00457 Glycosyl hydrolases family 11 AMC99_01996 PF01522 Polysaccharide deacetylase AMC99_01996 PF03422 Carbohydrate binding module (family 6) AMC99_02000 PF07724 AAA domain (Cdc48 subfamily) AMC99_02000 PF10431 C-terminal, D2-small domain, of ClpB protein AMC99_02000 PF06689 ClpX C4-type zinc finger AMC99_02002 PF00574 Clp protease AMC99_02004 PF01425 Amidase AMC99_02005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMC99_02005 PF05697 Bacterial trigger factor protein (TF) AMC99_02005 PF05698 Bacterial trigger factor protein (TF) C-terminus AMC99_02008 PF01926 50S ribosome-binding GTPase AMC99_02008 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMC99_02010 PF04235 Protein of unknown function (DUF418) AMC99_02016 PF01979 Amidohydrolase family AMC99_02017 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMC99_02017 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMC99_02018 PF01343 Peptidase family S49 AMC99_02020 PF00171 Aldehyde dehydrogenase family AMC99_02021 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMC99_02021 PF03807 NADP oxidoreductase coenzyme F420-dependent AMC99_02022 PF00696 Amino acid kinase family AMC99_02022 PF01472 PUA domain AMC99_02026 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMC99_02026 PF02403 Seryl-tRNA synthetase N-terminal domain AMC99_02027 PF01975 Survival protein SurE AMC99_02030 PF00919 Uncharacterized protein family UPF0004 AMC99_02030 PF04055 Radical SAM superfamily AMC99_02030 PF18693 TRAM domain AMC99_02031 PF01894 Uncharacterised protein family UPF0047 AMC99_02032 PF10459 Peptidase S46 AMC99_02034 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMC99_02034 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMC99_02035 PF00920 Dehydratase family AMC99_02036 PF02685 Glucokinase AMC99_02037 PF01081 KDPG and KHG aldolase AMC99_02040 PF01171 PP-loop family AMC99_02043 PF00391 PEP-utilising enzyme, mobile domain AMC99_02043 PF02896 PEP-utilising enzyme, TIM barrel domain AMC99_02043 PF05524 PEP-utilising enzyme, N-terminal AMC99_02047 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMC99_02047 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMC99_02051 PF02445 Quinolinate synthetase A protein AMC99_02053 PF10011 Predicted membrane protein (DUF2254) AMC99_02056 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMC99_02058 PF03099 Biotin/lipoate A/B protein ligase family AMC99_02062 PF03960 ArsC family AMC99_02063 PF07715 TonB-dependent Receptor Plug Domain AMC99_02063 PF00593 TonB dependent receptor AMC99_02064 PF01799 [2Fe-2S] binding domain AMC99_02064 PF00111 2Fe-2S iron-sulfur cluster binding domain AMC99_02065 PF00596 Class II Aldolase and Adducin N-terminal domain AMC99_02067 PF02895 Signal transducing histidine kinase, homodimeric domain AMC99_02067 PF01627 Hpt domain AMC99_02067 PF07194 P2 response regulator binding domain AMC99_02067 PF01584 CheW-like domain AMC99_02067 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_02069 PF00072 Response regulator receiver domain AMC99_02069 PF00486 Transcriptional regulatory protein, C terminal AMC99_02070 PF01339 CheB methylesterase AMC99_02070 PF00072 Response regulator receiver domain AMC99_02071 PF03705 CheR methyltransferase, all-alpha domain AMC99_02071 PF01739 CheR methyltransferase, SAM binding domain AMC99_02072 PF08447 PAS fold AMC99_02072 PF08448 PAS fold AMC99_02072 PF00563 EAL domain AMC99_02072 PF00990 Diguanylate cyclase, GGDEF domain AMC99_02074 PF03466 LysR substrate binding domain AMC99_02074 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMC99_02076 PF02515 CoA-transferase family III AMC99_02078 PF13193 AMP-binding enzyme C-terminal domain AMC99_02078 PF00501 AMP-binding enzyme AMC99_02079 PF00890 FAD binding domain AMC99_02079 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AMC99_02080 PF08240 Alcohol dehydrogenase GroES-like domain AMC99_02080 PF00107 Zinc-binding dehydrogenase AMC99_02081 PF00067 Cytochrome P450 AMC99_02082 PF00753 Metallo-beta-lactamase superfamily AMC99_02083 PF00593 TonB dependent receptor AMC99_02083 PF07715 TonB-dependent Receptor Plug Domain AMC99_02085 PF01070 FMN-dependent dehydrogenase AMC99_02086 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMC99_02087 PF00849 RNA pseudouridylate synthase AMC99_02090 PF00589 Phage integrase family AMC99_02093 PF00072 Response regulator receiver domain AMC99_02093 PF00486 Transcriptional regulatory protein, C terminal AMC99_02094 PF08240 Alcohol dehydrogenase GroES-like domain AMC99_02094 PF00107 Zinc-binding dehydrogenase AMC99_02095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_02095 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_02095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_02099 PF00486 Transcriptional regulatory protein, C terminal AMC99_02099 PF00072 Response regulator receiver domain AMC99_02102 PF00535 Glycosyl transferase family 2 AMC99_02104 PF00072 Response regulator receiver domain AMC99_02104 PF00486 Transcriptional regulatory protein, C terminal AMC99_02105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_02105 PF00989 PAS fold AMC99_02105 PF00512 His Kinase A (phospho-acceptor) domain AMC99_02105 PF16736 Single Cache-like AMC99_02110 PF08448 PAS fold AMC99_02110 PF00563 EAL domain AMC99_02110 PF08447 PAS fold AMC99_02110 PF00990 Diguanylate cyclase, GGDEF domain AMC99_02124 PF00005 ABC transporter AMC99_02124 PF00664 ABC transporter transmembrane region AMC99_02125 PF05193 Peptidase M16 inactive domain AMC99_02126 PF01740 STAS domain AMC99_02126 PF00916 Sulfate permease family AMC99_02128 PF07724 AAA domain (Cdc48 subfamily) AMC99_02128 PF00004 ATPase family associated with various cellular activities (AAA) AMC99_02129 PF00227 Proteasome subunit AMC99_02133 PF00436 Single-strand binding protein family AMC99_02134 PF07664 Ferrous iron transport protein B C terminus AMC99_02134 PF02421 Ferrous iron transport protein B AMC99_02134 PF07670 Nucleoside recognition AMC99_02138 PF02630 SCO1/SenC AMC99_02139 PF03692 Putative zinc- or iron-chelating domain AMC99_02143 PF01872 RibD C-terminal domain AMC99_02143 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMC99_02144 PF00677 Lumazine binding domain AMC99_02147 PF00691 OmpA family AMC99_02147 PF13488 Glycine zipper AMC99_02149 PF00155 Aminotransferase class I and II AMC99_02152 PF00589 Phage integrase family AMC99_02152 PF13356 Arm DNA-binding domain AMC99_02153 PF03109 ABC1 family AMC99_02155 PF13533 Biotin-lipoyl like AMC99_02156 PF07690 Major Facilitator Superfamily AMC99_02157 PF02321 Outer membrane efflux protein AMC99_02159 PF18340 DNA relaxase TraI 2B/2B-like domain AMC99_02159 PF07057 DNA helicase TraI AMC99_02159 PF18272 single-stranded DNA binding TraI N-terminal subdomain AMC99_02159 PF08751 TrwC relaxase AMC99_02159 PF18340 DNA relaxase TraI 2B/2B-like domain AMC99_02159 PF07057 DNA helicase TraI AMC99_02159 PF18272 single-stranded DNA binding TraI N-terminal subdomain AMC99_02159 PF08751 TrwC relaxase AMC99_02161 PF13195 Protein of unknown function (DUF4011) AMC99_02161 PF13087 AAA domain AMC99_02161 PF13086 AAA domain AMC99_02161 PF13087 AAA domain AMC99_02161 PF13195 Protein of unknown function (DUF4011) AMC99_02161 PF13086 AAA domain AMC99_02164 PF07804 HipA-like C-terminal domain AMC99_02164 PF13657 HipA N-terminal domain AMC99_02165 PF01381 Helix-turn-helix AMC99_02168 PF02583 Metal-sensitive transcriptional repressor AMC99_02169 PF07731 Multicopper oxidase AMC99_02169 PF07732 Multicopper oxidase AMC99_02169 PF00394 Multicopper oxidase AMC99_02170 PF05275 Copper resistance protein B precursor (CopB) AMC99_02171 PF01238 Phosphomannose isomerase type I AMC99_02173 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMC99_02175 PF00108 Thiolase, N-terminal domain AMC99_02175 PF02803 Thiolase, C-terminal domain AMC99_02176 PF00378 Enoyl-CoA hydratase/isomerase AMC99_02177 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_02177 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_02177 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_02178 PF07715 TonB-dependent Receptor Plug Domain AMC99_02179 PF00743 Flavin-binding monooxygenase-like AMC99_02181 PF00994 Probable molybdopterin binding domain AMC99_02181 PF02464 Competence-damaged protein AMC99_02181 PF18146 Damage-inducible protein CinA KH domain AMC99_02184 PF00687 Ribosomal protein L1p/L10e family AMC99_02185 PF03946 Ribosomal protein L11, N-terminal domain AMC99_02185 PF00298 Ribosomal protein L11, RNA binding domain AMC99_02191 PF13193 AMP-binding enzyme C-terminal domain AMC99_02191 PF00501 AMP-binding enzyme AMC99_02191 PF18563 TubC N-terminal docking domain AMC99_02191 PF00668 Condensation domain AMC99_02191 PF00550 Phosphopantetheine attachment site AMC99_02193 PF03062 MBOAT, membrane-bound O-acyltransferase family AMC99_02194 PF00467 KOW motif AMC99_02194 PF02357 Transcription termination factor nusG AMC99_02196 PF01235 Sodium:alanine symporter family AMC99_02204 PF00501 AMP-binding enzyme AMC99_02210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_02210 PF01590 GAF domain AMC99_02210 PF08446 PAS fold AMC99_02210 PF00512 His Kinase A (phospho-acceptor) domain AMC99_02210 PF00360 Phytochrome region AMC99_02211 PF00483 Nucleotidyl transferase AMC99_02211 PF01050 Mannose-6-phosphate isomerase AMC99_02213 PF00072 Response regulator receiver domain AMC99_02213 PF09308 LuxQ, periplasmic AMC99_02213 PF00512 His Kinase A (phospho-acceptor) domain AMC99_02213 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_02214 PF00593 TonB dependent receptor AMC99_02216 PF07662 Na+ dependent nucleoside transporter C-terminus AMC99_02216 PF01773 Na+ dependent nucleoside transporter N-terminus AMC99_02218 PF13520 Amino acid permease AMC99_02219 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMC99_02219 PF00355 Rieske [2Fe-2S] domain AMC99_02221 PF13426 PAS domain AMC99_02221 PF00196 Bacterial regulatory proteins, luxR family AMC99_02222 PF01339 CheB methylesterase AMC99_02222 PF01739 CheR methyltransferase, SAM binding domain AMC99_02222 PF08448 PAS fold AMC99_02222 PF03705 CheR methyltransferase, all-alpha domain AMC99_02225 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMC99_02227 PF00795 Carbon-nitrogen hydrolase AMC99_02227 PF02540 NAD synthase AMC99_02229 PF01625 Peptide methionine sulfoxide reductase AMC99_02231 PF01029 NusB family AMC99_02231 PF01189 16S rRNA methyltransferase RsmB/F AMC99_02233 PF00067 Cytochrome P450 AMC99_02235 PF00762 Ferrochelatase AMC99_02237 PF10609 NUBPL iron-transfer P-loop NTPase AMC99_02238 PF01145 SPFH domain / Band 7 family AMC99_02239 PF01145 SPFH domain / Band 7 family AMC99_02240 PF13180 PDZ domain AMC99_02241 PF00912 Transglycosylase AMC99_02241 PF00905 Penicillin binding protein transpeptidase domain AMC99_02242 PF01641 SelR domain AMC99_02247 PF00561 alpha/beta hydrolase fold AMC99_02247 PF07021 Methionine biosynthesis protein MetW AMC99_02248 PF00155 Aminotransferase class I and II AMC99_02249 PF00561 alpha/beta hydrolase fold AMC99_02250 PF02153 Prephenate dehydrogenase AMC99_02254 PF00005 ABC transporter AMC99_02255 PF13717 zinc-ribbon domain AMC99_02259 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMC99_02259 PF14850 DNA-binding domain of Proline dehydrogenase AMC99_02259 PF00171 Aldehyde dehydrogenase family AMC99_02259 PF01619 Proline dehydrogenase AMC99_02260 PF01037 Lrp/AsnC ligand binding domain AMC99_02261 PF00171 Aldehyde dehydrogenase family AMC99_02262 PF01048 Phosphorylase superfamily AMC99_02263 PF08240 Alcohol dehydrogenase GroES-like domain AMC99_02263 PF00107 Zinc-binding dehydrogenase AMC99_02266 PF00692 dUTPase AMC99_02268 PF03435 Saccharopine dehydrogenase NADP binding domain AMC99_02269 PF00593 TonB dependent receptor AMC99_02269 PF07715 TonB-dependent Receptor Plug Domain AMC99_02271 PF00085 Thioredoxin AMC99_02273 PF01914 MarC family integral membrane protein AMC99_02275 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMC99_02275 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMC99_02276 PF02325 YGGT family AMC99_02277 PF00696 Amino acid kinase family AMC99_02282 PF00268 Ribonucleotide reductase, small chain AMC99_02287 PF03477 ATP cone domain AMC99_02287 PF00317 Ribonucleotide reductase, all-alpha domain AMC99_02287 PF02867 Ribonucleotide reductase, barrel domain AMC99_02289 PF00561 alpha/beta hydrolase fold AMC99_02291 PF00890 FAD binding domain AMC99_02291 PF02910 Fumarate reductase flavoprotein C-term AMC99_02294 PF00005 ABC transporter AMC99_02299 PF03060 Nitronate monooxygenase AMC99_02300 PF00633 Helix-hairpin-helix motif AMC99_02300 PF00730 HhH-GPD superfamily base excision DNA repair protein AMC99_02303 PF02540 NAD synthase AMC99_02303 PF00958 GMP synthase C terminal domain AMC99_02303 PF00117 Glutamine amidotransferase class-I AMC99_02304 PF07690 Major Facilitator Superfamily AMC99_02305 PF00501 AMP-binding enzyme AMC99_02305 PF13193 AMP-binding enzyme C-terminal domain AMC99_02306 PF02585 GlcNAc-PI de-N-acetylase AMC99_02309 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_02309 PF00204 DNA gyrase B AMC99_02309 PF00986 DNA gyrase B subunit, carboxyl terminus AMC99_02309 PF01751 Toprim domain AMC99_02311 PF00149 Calcineurin-like phosphoesterase AMC99_02314 PF01553 Acyltransferase AMC99_02316 PF01039 Carboxyl transferase domain AMC99_02318 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_02318 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_02318 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_02319 PF13581 Histidine kinase-like ATPase domain AMC99_02319 PF07536 HWE histidine kinase AMC99_02319 PF13426 PAS domain AMC99_02321 PF00005 ABC transporter AMC99_02321 PF00571 CBS domain AMC99_02322 PF00528 Binding-protein-dependent transport system inner membrane component AMC99_02324 PF01790 Prolipoprotein diacylglyceryl transferase AMC99_02325 PF00501 AMP-binding enzyme AMC99_02325 PF13193 AMP-binding enzyme C-terminal domain AMC99_02326 PF01966 HD domain AMC99_02326 PF08335 GlnD PII-uridylyltransferase AMC99_02326 PF03445 Putative nucleotidyltransferase DUF294 AMC99_02327 PF02954 Bacterial regulatory protein, Fis family AMC99_02327 PF02954 Bacterial regulatory protein, Fis family AMC99_02328 PF00171 Aldehyde dehydrogenase family AMC99_02331 PF01168 Alanine racemase, N-terminal domain AMC99_02332 PF02581 Thiamine monophosphate synthase AMC99_02333 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMC99_02333 PF17854 FtsK alpha domain AMC99_02333 PF09397 Ftsk gamma domain AMC99_02333 PF01580 FtsK/SpoIIIE family AMC99_02334 PF00990 Diguanylate cyclase, GGDEF domain AMC99_02336 PF00326 Prolyl oligopeptidase family AMC99_02336 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMC99_02340 PF00072 Response regulator receiver domain AMC99_02340 PF00486 Transcriptional regulatory protein, C terminal AMC99_02341 PF00512 His Kinase A (phospho-acceptor) domain AMC99_02341 PF00672 HAMP domain AMC99_02341 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_02342 PF05872 Bacterial protein of unknown function (DUF853) AMC99_02343 PF04715 Anthranilate synthase component I, N terminal region AMC99_02343 PF00425 chorismate binding enzyme AMC99_02344 PF00849 RNA pseudouridylate synthase AMC99_02346 PF00471 Ribosomal protein L33 AMC99_02348 PF00245 Alkaline phosphatase AMC99_02350 PF00925 GTP cyclohydrolase II AMC99_02359 PF02515 CoA-transferase family III AMC99_02360 PF00108 Thiolase, N-terminal domain AMC99_02360 PF02803 Thiolase, C-terminal domain AMC99_02362 PF03976 Polyphosphate kinase 2 (PPK2) AMC99_02363 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AMC99_02366 PF02673 Bacitracin resistance protein BacA AMC99_02367 PF01431 Peptidase family M13 AMC99_02367 PF05649 Peptidase family M13 AMC99_02368 PF00664 ABC transporter transmembrane region AMC99_02368 PF00005 ABC transporter AMC99_02370 PF13520 Amino acid permease AMC99_02372 PF00108 Thiolase, N-terminal domain AMC99_02372 PF02803 Thiolase, C-terminal domain AMC99_02378 PF00310 Glutamine amidotransferases class-II AMC99_02378 PF04898 Glutamate synthase central domain AMC99_02378 PF01645 Conserved region in glutamate synthase AMC99_02378 PF01493 GXGXG motif AMC99_02379 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMC99_02379 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMC99_02382 PF00378 Enoyl-CoA hydratase/isomerase AMC99_02383 PF03167 Uracil DNA glycosylase superfamily AMC99_02387 PF02397 Bacterial sugar transferase AMC99_02390 PF00133 tRNA synthetases class I (I, L, M and V) AMC99_02390 PF13603 Leucyl-tRNA synthetase, Domain 2 AMC99_02390 PF08264 Anticodon-binding domain of tRNA AMC99_02396 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMC99_02397 PF00483 Nucleotidyl transferase AMC99_02398 PF00067 Cytochrome P450 AMC99_02399 PF00501 AMP-binding enzyme AMC99_02399 PF13193 AMP-binding enzyme C-terminal domain AMC99_02400 PF01476 LysM domain AMC99_02400 PF08525 Opacity-associated protein A N-terminal motif AMC99_02400 PF01551 Peptidase family M23 AMC99_02401 PF04305 Protein of unknown function (DUF455) AMC99_02402 PF00578 AhpC/TSA family AMC99_02403 PF08335 GlnD PII-uridylyltransferase AMC99_02403 PF03710 Glutamate-ammonia ligase adenylyltransferase AMC99_02405 PF04371 Porphyromonas-type peptidyl-arginine deiminase AMC99_02408 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMC99_02408 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMC99_02408 PF02824 TGS domain AMC99_02408 PF03129 Anticodon binding domain AMC99_02412 PF01381 Helix-turn-helix AMC99_02413 PF12697 Alpha/beta hydrolase family AMC99_02414 PF09423 PhoD-like phosphatase AMC99_02414 PF16655 PhoD-like phosphatase, N-terminal domain AMC99_02417 PF00296 Luciferase-like monooxygenase AMC99_02419 PF05088 Bacterial NAD-glutamate dehydrogenase AMC99_02420 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMC99_02420 PF14759 Reductase C-terminal AMC99_02421 PF02515 CoA-transferase family III AMC99_02422 PF08331 Domain of unknown function (DUF1730) AMC99_02423 PF13732 Domain of unknown function (DUF4162) AMC99_02423 PF00005 ABC transporter AMC99_02425 PF00067 Cytochrome P450 AMC99_02426 PF01641 SelR domain AMC99_02432 PF00216 Bacterial DNA-binding protein AMC99_02433 PF07702 UTRA domain AMC99_02433 PF00392 Bacterial regulatory proteins, gntR family AMC99_02434 PF00854 POT family AMC99_02435 PF00449 Urease alpha-subunit, N-terminal domain AMC99_02435 PF01979 Amidohydrolase family AMC99_02436 PF13382 Adenine deaminase C-terminal domain AMC99_02436 PF01979 Amidohydrolase family AMC99_02438 PF00378 Enoyl-CoA hydratase/isomerase AMC99_02440 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMC99_02440 PF02779 Transketolase, pyrimidine binding domain AMC99_02440 PF02780 Transketolase, C-terminal domain AMC99_02442 PF01625 Peptide methionine sulfoxide reductase AMC99_02444 PF01808 AICARFT/IMPCHase bienzyme AMC99_02444 PF02142 MGS-like domain AMC99_02446 PF00834 Ribulose-phosphate 3 epimerase family AMC99_02451 PF07690 Major Facilitator Superfamily AMC99_02452 PF07691 PA14 domain AMC99_02452 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMC99_02452 PF00933 Glycosyl hydrolase family 3 N terminal domain AMC99_02452 PF14310 Fibronectin type III-like domain AMC99_02454 PF00356 Bacterial regulatory proteins, lacI family AMC99_02455 PF04820 Tryptophan halogenase AMC99_02467 PF00135 Carboxylesterase family AMC99_02472 PF06580 Histidine kinase AMC99_02472 PF07694 5TMR of 5TMR-LYT AMC99_02472 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_02473 PF00072 Response regulator receiver domain AMC99_02473 PF04397 LytTr DNA-binding domain AMC99_02474 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMC99_02474 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMC99_02476 PF00445 Ribonuclease T2 family AMC99_02477 PF14437 MafB19-like deaminase AMC99_02478 PF00830 Ribosomal L28 family AMC99_02482 PF02844 Phosphoribosylglycinamide synthetase, N domain AMC99_02482 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMC99_02482 PF02843 Phosphoribosylglycinamide synthetase, C domain AMC99_02483 PF13742 OB-fold nucleic acid binding domain AMC99_02483 PF02601 Exonuclease VII, large subunit AMC99_02485 PF00294 pfkB family carbohydrate kinase AMC99_02489 PF01521 Iron-sulphur cluster biosynthesis AMC99_02490 PF00583 Acetyltransferase (GNAT) family AMC99_02492 PF01883 Iron-sulfur cluster assembly protein AMC99_02493 PF00266 Aminotransferase class-V AMC99_02494 PF01458 Uncharacterized protein family (UPF0051) AMC99_02495 PF00005 ABC transporter AMC99_02498 PF01458 Uncharacterized protein family (UPF0051) AMC99_02499 PF02082 Transcriptional regulator AMC99_02504 PF01180 Dihydroorotate dehydrogenase AMC99_02506 PF00501 AMP-binding enzyme AMC99_02508 PF05690 Thiazole biosynthesis protein ThiG AMC99_02510 PF02628 Cytochrome oxidase assembly protein AMC99_02513 PF00572 Ribosomal protein L13 AMC99_02514 PF00380 Ribosomal protein S9/S16 AMC99_02521 PF04397 LytTr DNA-binding domain AMC99_02521 PF00072 Response regulator receiver domain AMC99_02522 PF06580 Histidine kinase AMC99_02522 PF13492 GAF domain AMC99_02522 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMC99_02522 PF07694 5TMR of 5TMR-LYT AMC99_02523 PF05683 Fumarase C-terminus AMC99_02523 PF05681 Fumarate hydratase (Fumerase) AMC99_02525 PF02321 Outer membrane efflux protein AMC99_02530 PF01521 Iron-sulphur cluster biosynthesis AMC99_02535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMC99_02536 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AMC99_02536 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMC99_02537 PF00929 Exonuclease AMC99_02538 PF01121 Dephospho-CoA kinase AMC99_02539 PF08501 Shikimate dehydrogenase substrate binding domain AMC99_02539 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMC99_02540 PF02545 Maf-like protein AMC99_02541 PF03618 Kinase/pyrophosphorylase AMC99_02542 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMC99_02544 PF07497 Rho termination factor, RNA-binding domain AMC99_02544 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMC99_02544 PF07498 Rho termination factor, N-terminal domain AMC99_02547 PF01645 Conserved region in glutamate synthase AMC99_02548 PF01738 Dienelactone hydrolase family AMC99_02550 PF10396 GTP-binding protein TrmE N-terminus AMC99_02550 PF12631 MnmE helical domain AMC99_02550 PF01926 50S ribosome-binding GTPase AMC99_02551 PF01134 Glucose inhibited division protein A AMC99_02551 PF13932 GidA associated domain AMC99_02552 PF02527 rRNA small subunit methyltransferase G AMC99_02553 PF13614 AAA domain AMC99_02554 PF02195 ParB-like nuclease domain AMC99_02554 PF17762 HTH domain found in ParB protein AMC99_02559 PF13185 GAF domain AMC99_02560 PF07995 Glucose / Sorbosone dehydrogenase AMC99_02562 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMC99_02562 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMC99_02562 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMC99_02562 PF02770 Acyl-CoA dehydrogenase, middle domain AMC99_02563 PF01300 Telomere recombination AMC99_02563 PF03481 Putative GTP-binding controlling metal-binding AMC99_02565 PF02559 CarD-like/TRCF domain AMC99_02566 PF00037 4Fe-4S binding domain AMC99_02566 PF11953 Domain of unknown function (DUF3470) AMC99_02569 PF01551 Peptidase family M23 AMC99_02569 PF10145 Phage-related minor tail protein AMC99_02569 PF01464 Transglycosylase SLT domain AMC99_02570 PF00490 Delta-aminolevulinic acid dehydratase AMC99_02574 PF02594 Uncharacterised ACR, YggU family COG1872 AMC99_02575 PF06912 Protein of unknown function (DUF1275) AMC99_02576 PF04675 DNA ligase N terminus AMC99_02576 PF01068 ATP dependent DNA ligase domain AMC99_02576 PF04679 ATP dependent DNA ligase C terminal region AMC99_02579 PF10431 C-terminal, D2-small domain, of ClpB protein AMC99_02579 PF02861 Clp amino terminal domain, pathogenicity island component AMC99_02579 PF17871 AAA lid domain AMC99_02579 PF07724 AAA domain (Cdc48 subfamily) AMC99_02579 PF00004 ATPase family associated with various cellular activities (AAA) AMC99_02581 PF08240 Alcohol dehydrogenase GroES-like domain AMC99_02581 PF00107 Zinc-binding dehydrogenase AMC99_02582 PF13417 Glutathione S-transferase, N-terminal domain AMC99_02584 PF00501 AMP-binding enzyme AMC99_02584 PF13193 AMP-binding enzyme C-terminal domain AMC99_02586 PF01551 Peptidase family M23 AMC99_02586 PF08525 Opacity-associated protein A N-terminal motif AMC99_02586 PF01476 LysM domain AMC99_02587 PF00171 Aldehyde dehydrogenase family AMC99_02588 PF01467 Cytidylyltransferase-like AMC99_02590 PF02590 Predicted SPOUT methyltransferase AMC99_02592 PF13180 PDZ domain AMC99_02592 PF03572 Peptidase family S41 AMC99_02594 PF03232 Ubiquinone biosynthesis protein COQ7 AMC99_02596 PF16363 GDP-mannose 4,6 dehydratase AMC99_02597 PF02397 Bacterial sugar transferase AMC99_02599 PF00483 Nucleotidyl transferase AMC99_02600 PF04321 RmlD substrate binding domain AMC99_02601 PF16363 GDP-mannose 4,6 dehydratase AMC99_02602 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMC99_02608 PF13439 Glycosyltransferase Family 4 AMC99_02608 PF00534 Glycosyl transferases group 1 AMC99_02613 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMC99_02613 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMC99_02613 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMC99_02617 PF13807 G-rich domain on putative tyrosine kinase AMC99_02617 PF02706 Chain length determinant protein AMC99_02617 PF13614 AAA domain AMC99_02620 PF03631 Virulence factor BrkB AMC99_02621 PF00226 DnaJ domain AMC99_02621 PF00684 DnaJ central domain AMC99_02621 PF01556 DnaJ C terminal domain AMC99_02622 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMC99_02622 PF01243 Pyridoxamine 5'-phosphate oxidase AMC99_02623 PF16916 Dimerisation domain of Zinc Transporter AMC99_02623 PF01545 Cation efflux family AMC99_02624 PF02567 Phenazine biosynthesis-like protein AMC99_02631 PF04226 Transglycosylase associated protein AMC99_02632 PF13533 Biotin-lipoyl like AMC99_02633 PF00873 AcrB/AcrD/AcrF family AMC99_02634 PF04286 Protein of unknown function (DUF445) AMC99_02636 PF00766 Electron transfer flavoprotein FAD-binding domain AMC99_02636 PF01012 Electron transfer flavoprotein domain AMC99_02637 PF01012 Electron transfer flavoprotein domain AMC99_02639 PF08442 ATP-grasp domain AMC99_02639 PF00549 CoA-ligase AMC99_02641 PF00459 Inositol monophosphatase family AMC99_02642 PF00691 OmpA family AMC99_02642 PF01389 OmpA-like transmembrane domain AMC99_02643 PF00571 CBS domain AMC99_02643 PF03471 Transporter associated domain AMC99_02643 PF01595 Cyclin M transmembrane N-terminal domain AMC99_02645 PF01252 Signal peptidase (SPase) II AMC99_02646 PF08264 Anticodon-binding domain of tRNA AMC99_02646 PF00133 tRNA synthetases class I (I, L, M and V) AMC99_02647 PF01687 Riboflavin kinase AMC99_02647 PF06574 FAD synthetase AMC99_02648 PF01244 Membrane dipeptidase (Peptidase family M19) AMC99_02649 PF00186 Dihydrofolate reductase AMC99_02650 PF02222 ATP-grasp domain AMC99_02650 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMC99_02651 PF00731 AIR carboxylase AMC99_02652 PF00300 Histidine phosphatase superfamily (branch 1) AMC99_02655 PF12804 MobA-like NTP transferase domain AMC99_02657 PF03703 Bacterial PH domain AMC99_02659 PF01212 Beta-eliminating lyase AMC99_02662 PF11940 Domain of unknown function (DUF3458) Ig-like fold AMC99_02662 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AMC99_02662 PF01433 Peptidase family M1 domain AMC99_02664 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMC99_02664 PF00355 Rieske [2Fe-2S] domain AMC99_02665 PF00032 Cytochrome b(C-terminal)/b6/petD AMC99_02665 PF00033 Cytochrome b/b6/petB AMC99_02666 PF02167 Cytochrome C1 family AMC99_02667 PF00156 Phosphoribosyl transferase domain AMC99_02668 PF00999 Sodium/hydrogen exchanger family AMC99_02668 PF03471 Transporter associated domain AMC99_02672 PF02569 Pantoate-beta-alanine ligase AMC99_02673 PF13614 AAA domain AMC99_02675 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMC99_02675 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMC99_02675 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMC99_02675 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMC99_02677 PF00270 DEAD/DEAH box helicase AMC99_02677 PF00271 Helicase conserved C-terminal domain AMC99_02677 PF08494 DEAD/H associated AMC99_02679 PF02472 Biopolymer transport protein ExbD/TolR AMC99_02680 PF02472 Biopolymer transport protein ExbD/TolR AMC99_02681 PF02472 Biopolymer transport protein ExbD/TolR AMC99_02682 PF01618 MotA/TolQ/ExbB proton channel family AMC99_02683 PF03544 Gram-negative bacterial TonB protein C-terminal AMC99_02686 PF03447 Homoserine dehydrogenase, NAD binding domain AMC99_02686 PF00742 Homoserine dehydrogenase AMC99_02686 PF01842 ACT domain AMC99_02688 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AMC99_02689 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMC99_02689 PF14572 Phosphoribosyl synthetase-associated domain AMC99_02691 PF00459 Inositol monophosphatase family AMC99_02693 PF01632 Ribosomal protein L35 AMC99_02694 PF00453 Ribosomal protein L20 AMC99_02698 PF01409 tRNA synthetases class II core domain (F) AMC99_02698 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMC99_02699 PF03483 B3/4 domain AMC99_02699 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMC99_02699 PF01588 Putative tRNA binding domain AMC99_02699 PF03147 Ferredoxin-fold anticodon binding domain AMC99_02699 PF03484 tRNA synthetase B5 domain AMC99_02700 PF07715 TonB-dependent Receptor Plug Domain AMC99_02700 PF00593 TonB dependent receptor AMC99_02702 PF00009 Elongation factor Tu GTP binding domain AMC99_02702 PF03144 Elongation factor Tu domain 2 AMC99_02702 PF16658 Class II release factor RF3, C-terminal domain AMC99_02703 PF00561 alpha/beta hydrolase fold AMC99_02706 PF00543 Nitrogen regulatory protein P-II AMC99_02707 PF00909 Ammonium Transporter Family AMC99_02708 PF00593 TonB dependent receptor AMC99_02708 PF07715 TonB-dependent Receptor Plug Domain AMC99_02711 PF00732 GMC oxidoreductase AMC99_02711 PF05199 GMC oxidoreductase AMC99_02712 PF04116 Fatty acid hydroxylase superfamily AMC99_02714 PF01546 Peptidase family M20/M25/M40 AMC99_02716 PF00313 'Cold-shock' DNA-binding domain AMC99_02717 PF00202 Aminotransferase class-III AMC99_02718 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMC99_02718 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMC99_02719 PF01430 Hsp33 protein AMC99_02721 PF06508 Queuosine biosynthesis protein QueC AMC99_02723 PF00080 Copper/zinc superoxide dismutase (SODC) AMC99_02724 PF00691 OmpA family AMC99_02730 PF09335 SNARE associated Golgi protein AMC99_02731 PF13545 Crp-like helix-turn-helix domain AMC99_02731 PF00027 Cyclic nucleotide-binding domain AMC99_02733 PF02566 OsmC-like protein AMC99_02734 PF00155 Aminotransferase class I and II AMC99_02735 PF00550 Phosphopantetheine attachment site AMC99_02737 PF00072 Response regulator receiver domain AMC99_02744 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMC99_02746 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMC99_02748 PF03301 Tryptophan 2,3-dioxygenase AMC99_02749 PF04199 Putative cyclase AMC99_02750 PF00266 Aminotransferase class-V AMC99_02752 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMC99_02754 PF01923 Cobalamin adenosyltransferase AMC99_02755 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMC99_02755 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMC99_02759 PF00488 MutS domain V AMC99_02759 PF05190 MutS family domain IV AMC99_02759 PF05192 MutS domain III AMC99_02759 PF05188 MutS domain II AMC99_02759 PF01624 MutS domain I AMC99_02760 PF01515 Phosphate acetyl/butaryl transferase AMC99_02760 PF03949 Malic enzyme, NAD binding domain AMC99_02760 PF00390 Malic enzyme, N-terminal domain AMC99_02762 PF00171 Aldehyde dehydrogenase family AMC99_02764 PF00106 short chain dehydrogenase AMC99_02765 PF02390 Putative methyltransferase AMC99_02766 PF00072 Response regulator receiver domain AMC99_02766 PF00486 Transcriptional regulatory protein, C terminal AMC99_02768 PF04552 Sigma-54, DNA binding domain AMC99_02768 PF04963 Sigma-54 factor, core binding domain AMC99_02768 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMC99_02769 PF00005 ABC transporter AMC99_02771 PF00924 Mechanosensitive ion channel AMC99_02771 PF05552 Conserved TM helix AMC99_02772 PF00719 Inorganic pyrophosphatase AMC99_02774 PF13393 Histidyl-tRNA synthetase AMC99_02775 PF00472 RF-1 domain AMC99_02775 PF03462 PCRF domain AMC99_02776 PF05175 Methyltransferase small domain AMC99_02776 PF17827 PrmC N-terminal domain AMC99_02778 PF00795 Carbon-nitrogen hydrolase AMC99_02779 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMC99_02779 PF02772 S-adenosylmethionine synthetase, central domain AMC99_02779 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMC99_02780 PF02515 CoA-transferase family III AMC99_02782 PF01144 Coenzyme A transferase AMC99_02784 PF01144 Coenzyme A transferase AMC99_02785 PF01434 Peptidase family M41 AMC99_02785 PF17862 AAA+ lid domain AMC99_02785 PF06480 FtsH Extracellular AMC99_02785 PF00004 ATPase family associated with various cellular activities (AAA) AMC99_02787 PF07536 HWE histidine kinase AMC99_02787 PF13426 PAS domain AMC99_02787 PF13581 Histidine kinase-like ATPase domain AMC99_02788 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMC99_02788 PF00476 DNA polymerase family A AMC99_02788 PF01367 5'-3' exonuclease, C-terminal SAM fold AMC99_02788 PF01612 3'-5' exonuclease AMC99_02793 PF00118 TCP-1/cpn60 chaperonin family AMC99_02794 PF00166 Chaperonin 10 Kd subunit AMC99_02795 PF01554 MatE AMC99_02796 PF00034 Cytochrome c AMC99_02797 PF16320 Ribosomal protein L7/L12 dimerisation domain AMC99_02797 PF00542 Ribosomal protein L7/L12 C-terminal domain AMC99_02798 PF00466 Ribosomal protein L10 AMC99_02802 PF13443 Cro/C1-type HTH DNA-binding domain AMC99_02806 PF04560 RNA polymerase Rpb2, domain 7 AMC99_02806 PF00562 RNA polymerase Rpb2, domain 6 AMC99_02806 PF10385 RNA polymerase beta subunit external 1 domain AMC99_02806 PF04565 RNA polymerase Rpb2, domain 3 AMC99_02806 PF04561 RNA polymerase Rpb2, domain 2 AMC99_02806 PF04563 RNA polymerase beta subunit AMC99_02807 PF04998 RNA polymerase Rpb1, domain 5 AMC99_02807 PF04983 RNA polymerase Rpb1, domain 3 AMC99_02807 PF04997 RNA polymerase Rpb1, domain 1 AMC99_02807 PF05000 RNA polymerase Rpb1, domain 4 AMC99_02807 PF00623 RNA polymerase Rpb1, domain 2 AMC99_02810 PF00144 Beta-lactamase AMC99_02811 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMC99_02812 PF00850 Histone deacetylase domain AMC99_02814 PF00224 Pyruvate kinase, barrel domain AMC99_02814 PF02887 Pyruvate kinase, alpha/beta domain AMC99_02816 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) AMC99_02817 PF01906 Putative heavy-metal-binding