AMC99_00009	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AMC99_00009	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AMC99_00009	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AMC99_00009	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AMC99_00009	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
AMC99_00009	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
AMC99_00009	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
AMC99_00009	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AMC99_00009	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
AMC99_00009	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
AMC99_00010	PWY-2941	L-lysine biosynthesis II
AMC99_00010	PWY-2942	L-lysine biosynthesis III
AMC99_00010	PWY-5097	L-lysine biosynthesis VI
AMC99_00010	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AMC99_00010	PWY-6559	spermidine biosynthesis II
AMC99_00010	PWY-6562	norspermidine biosynthesis
AMC99_00010	PWY-7153	grixazone biosynthesis
AMC99_00010	PWY-7977	AMC99_00010
AMC99_00013	PWY-723	alkylnitronates degradation
AMC99_00017	PWY-2201	folate transformations I
AMC99_00017	PWY-5497	purine nucleobases degradation II (anaerobic)
AMC99_00017	PWY-7909	AMC99_00017
AMC99_00116	PWY-5101	L-isoleucine biosynthesis II
AMC99_00116	PWY-5103	L-isoleucine biosynthesis III
AMC99_00116	PWY-5104	L-isoleucine biosynthesis IV
AMC99_00116	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMC99_00118	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMC99_00118	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMC99_00118	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMC99_00123	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMC99_00123	PWY-5743	3-hydroxypropanoate cycle
AMC99_00123	PWY-5744	glyoxylate assimilation
AMC99_00123	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMC99_00123	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMC99_00123	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMC99_00123	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMC99_00129	PWY-6748	nitrate reduction VII (denitrification)
AMC99_00130	PWY-6748	nitrate reduction VII (denitrification)
AMC99_00134	PWY-6823	molybdenum cofactor biosynthesis
AMC99_00136	PWY-6823	molybdenum cofactor biosynthesis
AMC99_00136	PWY-7887	AMC99_00136
AMC99_00138	PWY-6823	molybdenum cofactor biosynthesis
AMC99_00141	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMC99_00141	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMC99_00151	PWY-5642	2,4-dinitrotoluene degradation
AMC99_00158	PWY-1881	formate oxidation to CO<sub>2</sub>
AMC99_00158	PWY-5497	purine nucleobases degradation II (anaerobic)
AMC99_00158	PWY-6696	oxalate degradation III
AMC99_00158	PWY-7985	AMC99_00158
AMC99_00185	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMC99_00185	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMC99_00185	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMC99_00185	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMC99_00205	PWY-6556	pyrimidine ribonucleosides salvage II
AMC99_00205	PWY-7181	pyrimidine deoxyribonucleosides degradation
AMC99_00205	PWY-7193	pyrimidine ribonucleosides salvage I
AMC99_00205	PWY-7199	pyrimidine deoxyribonucleosides salvage
AMC99_00209	PWY-3821	galactose degradation III
AMC99_00209	PWY-6317	galactose degradation I (Leloir pathway)
AMC99_00209	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AMC99_00209	PWY-6527	stachyose degradation
AMC99_00209	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AMC99_00209	PWY-7344	UDP-D-galactose biosynthesis
AMC99_00232	PWY-2941	L-lysine biosynthesis II
AMC99_00232	PWY-2942	L-lysine biosynthesis III
AMC99_00232	PWY-5097	L-lysine biosynthesis VI
AMC99_00235	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMC99_00241	PWY-5839	menaquinol-7 biosynthesis
AMC99_00241	PWY-5844	menaquinol-9 biosynthesis
AMC99_00241	PWY-5849	menaquinol-6 biosynthesis
AMC99_00241	PWY-5890	menaquinol-10 biosynthesis
AMC99_00241	PWY-5891	menaquinol-11 biosynthesis
AMC99_00241	PWY-5892	menaquinol-12 biosynthesis
AMC99_00241	PWY-5895	menaquinol-13 biosynthesis
AMC99_00260	PWY-5506	methanol oxidation to formaldehyde IV
AMC99_00264	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMC99_00294	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AMC99_00302	PWY-6910	hydroxymethylpyrimidine salvage
AMC99_00302	PWY-7356	thiamin salvage IV (yeast)
AMC99_00302	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AMC99_00304	PWY-6749	CMP-legionaminate biosynthesis I
AMC99_00306	PWY-6854	ethylene biosynthesis III (microbes)
AMC99_00333	PWY-2201	folate transformations I
AMC99_00333	PWY-3841	folate transformations II
AMC99_00335	PWY-2201	folate transformations I
AMC99_00335	PWY-3841	folate transformations II
AMC99_00335	PWY-7977	AMC99_00335
AMC99_00350	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AMC99_00359	PWY-3781	aerobic respiration I (cytochrome c)
AMC99_00359	PWY-4521	arsenite oxidation I (respiratory)
AMC99_00359	PWY-6692	Fe(II) oxidation
AMC99_00359	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMC99_00368	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AMC99_00368	PWY-6855	chitin degradation I (archaea)
AMC99_00368	PWY-6906	chitin derivatives degradation
AMC99_00373	PWY-4381	fatty acid biosynthesis initiation I
AMC99_00373	PWY-5743	3-hydroxypropanoate cycle
AMC99_00373	PWY-5744	glyoxylate assimilation
AMC99_00373	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMC99_00373	PWY-6722	candicidin biosynthesis
AMC99_00387	PWY-723	alkylnitronates degradation
AMC99_00394	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AMC99_00411	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMC99_00414	PWY-7533	gliotoxin biosynthesis
AMC99_00427	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMC99_00451	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AMC99_00476	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMC99_00476	PWY-5109	2-methylbutanoate biosynthesis
AMC99_00476	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMC99_00476	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AMC99_00476	PWY-5177	glutaryl-CoA degradation
AMC99_00476	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMC99_00476	PWY-6435	4-hydroxybenzoate biosynthesis V
AMC99_00476	PWY-6583	pyruvate fermentation to butanol I
AMC99_00476	PWY-6863	pyruvate fermentation to hexanol
AMC99_00476	PWY-6883	pyruvate fermentation to butanol II
AMC99_00476	PWY-6944	androstenedione degradation
AMC99_00476	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMC99_00476	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMC99_00476	PWY-7007	methyl ketone biosynthesis
AMC99_00476	PWY-7046	4-coumarate degradation (anaerobic)
AMC99_00476	PWY-7094	fatty acid salvage
AMC99_00476	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMC99_00476	PWY-735	jasmonic acid biosynthesis
AMC99_00476	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AMC99_00476	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMC99_00476	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AMC99_00476	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AMC99_00476	PWY-7726	AMC99_00476
AMC99_00476	PWY-7778	AMC99_00476
AMC99_00476	PWY-7779	AMC99_00476
AMC99_00489	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AMC99_00489	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AMC99_00502	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
AMC99_00502	PWY-7248	pectin degradation III
AMC99_00503	PWY-6531	mannitol cycle
AMC99_00513	PWY-5108	L-isoleucine biosynthesis V
AMC99_00513	PWY-5132	humulone biosynthesis
AMC99_00513	PWY-5133	cohumulone biosynthesis
AMC99_00513	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AMC99_00513	PWY-7118	chitin degradation to ethanol
AMC99_00513	PWY-7857	AMC99_00513
AMC99_00515	PWY-5108	L-isoleucine biosynthesis V
AMC99_00515	PWY-5132	humulone biosynthesis
AMC99_00515	PWY-5133	cohumulone biosynthesis
AMC99_00515	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AMC99_00515	PWY-7118	chitin degradation to ethanol
AMC99_00515	PWY-7857	AMC99_00515
AMC99_00532	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMC99_00532	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AMC99_00532	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AMC99_00533	PWY-7805	AMC99_00533
AMC99_00533	PWY-7807	AMC99_00533
AMC99_00550	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AMC99_00551	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMC99_00551	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMC99_00551	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMC99_00551	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMC99_00561	PWY-6012	acyl carrier protein metabolism I
AMC99_00561	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AMC99_00561	PWY-6289	petrobactin biosynthesis
AMC99_00563	PWY-5686	UMP biosynthesis
AMC99_00563	PWY-7790	AMC99_00563
AMC99_00563	PWY-7791	AMC99_00563
AMC99_00565	PWY-3781	aerobic respiration I (cytochrome c)
AMC99_00565	PWY-4521	arsenite oxidation I (respiratory)
AMC99_00565	PWY-6692	Fe(II) oxidation
AMC99_00565	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMC99_00575	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AMC99_00575	PWY-6148	tetrahydromethanopterin biosynthesis
AMC99_00575	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AMC99_00575	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMC99_00577	PWY-6823	molybdenum cofactor biosynthesis
AMC99_00579	PWY-6823	molybdenum cofactor biosynthesis
AMC99_00579	PWY-7887	AMC99_00579
AMC99_00589	PWY-5686	UMP biosynthesis
AMC99_00589	PWY-7790	AMC99_00589
AMC99_00589	PWY-7791	AMC99_00589
AMC99_00601	PWY-6840	homoglutathione biosynthesis
AMC99_00601	PWY-7255	ergothioneine biosynthesis I (bacteria)
AMC99_00610	PWY-7793	AMC99_00610
AMC99_00626	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMC99_00630	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMC99_00630	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMC99_00648	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMC99_00648	PWY-6416	quinate degradation II
AMC99_00648	PWY-6707	gallate biosynthesis
AMC99_00665	PWY-3461	L-tyrosine biosynthesis II
AMC99_00665	PWY-3462	L-phenylalanine biosynthesis II
AMC99_00665	PWY-6120	L-tyrosine biosynthesis III
AMC99_00665	PWY-6627	salinosporamide A biosynthesis
AMC99_00665	PWY-7626	bacilysin biosynthesis
AMC99_00679	PWY-4381	fatty acid biosynthesis initiation I
AMC99_00681	PWY-5669	phosphatidylethanolamine biosynthesis I
AMC99_00682	PWY-5669	phosphatidylethanolamine biosynthesis I
AMC99_00689	PWY-5667	CDP-diacylglycerol biosynthesis I
AMC99_00689	PWY-5981	CDP-diacylglycerol biosynthesis III
AMC99_00689	PWY-7817	AMC99_00689
AMC99_00690	PWY-7560	methylerythritol phosphate pathway II
AMC99_00694	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMC99_00694	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMC99_00694	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMC99_00694	PWY-5994	palmitate biosynthesis I (animals and fungi)
AMC99_00694	PWY-6113	superpathway of mycolate biosynthesis
AMC99_00694	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMC99_00694	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMC99_00694	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMC99_00694	PWY-7663	gondoate biosynthesis (anaerobic)
AMC99_00694	PWY-7664	oleate biosynthesis IV (anaerobic)
AMC99_00694	PWY-7858	AMC99_00694
AMC99_00694	PWYG-321	mycolate biosynthesis
AMC99_00713	PWY-2941	L-lysine biosynthesis II
AMC99_00713	PWY-5097	L-lysine biosynthesis VI
AMC99_00719	PWY-5269	cardiolipin biosynthesis II
AMC99_00719	PWY-5668	cardiolipin biosynthesis I
AMC99_00719	PWY-7817	AMC99_00719
AMC99_00735	PWY-7199	pyrimidine deoxyribonucleosides salvage
AMC99_00737	PWY-4261	glycerol degradation I
AMC99_00737	PWY-6118	glycerol-3-phosphate shuttle
AMC99_00737	PWY-6952	glycerophosphodiester degradation
AMC99_00760	PWY-5350	thiosulfate disproportionation III (rhodanese)
AMC99_00760	PWY-7927	AMC99_00760
AMC99_00802	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMC99_00802	PWY-3162	L-tryptophan degradation V (side chain pathway)
AMC99_00802	PWY-5057	L-valine degradation II
AMC99_00802	PWY-5076	L-leucine degradation III
AMC99_00802	PWY-5078	L-isoleucine degradation II
AMC99_00802	PWY-5079	L-phenylalanine degradation III
AMC99_00802	PWY-5082	L-methionine degradation III
AMC99_00802	PWY-5480	pyruvate fermentation to ethanol I
AMC99_00802	PWY-5486	pyruvate fermentation to ethanol II
AMC99_00802	PWY-5751	phenylethanol biosynthesis
AMC99_00802	PWY-6313	serotonin degradation
AMC99_00802	PWY-6333	acetaldehyde biosynthesis I
AMC99_00802	PWY-6342	noradrenaline and adrenaline degradation
AMC99_00802	PWY-6587	pyruvate fermentation to ethanol III
AMC99_00802	PWY-6802	salidroside biosynthesis
AMC99_00802	PWY-6871	3-methylbutanol biosynthesis
AMC99_00802	PWY-7013	L-1,2-propanediol degradation
AMC99_00802	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMC99_00802	PWY-7118	chitin degradation to ethanol
AMC99_00802	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AMC99_00802	PWY-7798	AMC99_00802
AMC99_00804	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMC99_00814	PWY-5667	CDP-diacylglycerol biosynthesis I
AMC99_00814	PWY-5981	CDP-diacylglycerol biosynthesis III
AMC99_00814	PWY-7902	AMC99_00814
AMC99_00816	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMC99_00816	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMC99_00817	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMC99_00817	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMC99_00858	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMC99_00858	PWY-7118	chitin degradation to ethanol
AMC99_00858	PWY-7294	xylose degradation IV
AMC99_00858	PWY-7295	L-arabinose degradation IV
AMC99_00858	PWY-7854	AMC99_00858
AMC99_00868	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMC99_00868	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AMC99_00868	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMC99_00868	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMC99_00868	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AMC99_00868	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMC99_00868	PWY-7205	CMP phosphorylation
AMC99_00868	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMC99_00868	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMC99_00868	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMC99_00868	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMC99_00868	PWY-7224	purine deoxyribonucleosides salvage
AMC99_00868	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMC99_00868	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMC99_00871	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMC99_00871	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AMC99_00872	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMC99_00872	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMC99_00872	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMC99_00875	PWY-6936	seleno-amino acid biosynthesis
AMC99_00875	PWY-7274	D-cycloserine biosynthesis
AMC99_00875	PWY-7870	AMC99_00875
AMC99_00879	PWY-5278	sulfite oxidation III
AMC99_00879	PWY-5340	sulfate activation for sulfonation
AMC99_00879	PWY-6683	sulfate reduction III (assimilatory)
AMC99_00879	PWY-6932	selenate reduction
AMC99_00880	PWY-5278	sulfite oxidation III
AMC99_00880	PWY-5340	sulfate activation for sulfonation
AMC99_00880	PWY-6683	sulfate reduction III (assimilatory)
AMC99_00880	PWY-6932	selenate reduction
AMC99_00891	PWY-6562	norspermidine biosynthesis
AMC99_00899	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMC99_00899	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
AMC99_00900	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMC99_00900	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMC99_00912	PWY-3801	sucrose degradation II (sucrose synthase)
AMC99_00912	PWY-5054	sorbitol biosynthesis I
AMC99_00912	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AMC99_00912	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AMC99_00912	PWY-5659	GDP-mannose biosynthesis
AMC99_00912	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMC99_00912	PWY-621	sucrose degradation III (sucrose invertase)
AMC99_00912	PWY-622	starch biosynthesis
AMC99_00912	PWY-6981	chitin biosynthesis
AMC99_00912	PWY-6992	1,5-anhydrofructose degradation
AMC99_00912	PWY-7238	sucrose biosynthesis II
AMC99_00912	PWY-7347	sucrose biosynthesis III
AMC99_00912	PWY-7385	1,3-propanediol biosynthesis (engineered)
AMC99_00919	PWY-4381	fatty acid biosynthesis initiation I
AMC99_00919	PWY-5743	3-hydroxypropanoate cycle
AMC99_00919	PWY-5744	glyoxylate assimilation
AMC99_00919	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMC99_00919	PWY-6722	candicidin biosynthesis
AMC99_00920	PWY-5741	ethylmalonyl-CoA pathway
AMC99_00920	PWY-5743	3-hydroxypropanoate cycle
AMC99_00920	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMC99_00920	PWY-6728	methylaspartate cycle
AMC99_00920	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMC99_00920	PWY-7854	AMC99_00920
AMC99_00924	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AMC99_00929	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AMC99_00929	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AMC99_00929	PWY-7717	AMC99_00929
AMC99_00929	PWY-7733	AMC99_00929
AMC99_00929	PWY-7734	AMC99_00929
AMC99_00929	PWY-7765	AMC99_00929
AMC99_00930	PWY-6164	3-dehydroquinate biosynthesis I
AMC99_00931	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMC99_00935	PWY-4381	fatty acid biosynthesis initiation I
AMC99_00935	PWY-5743	3-hydroxypropanoate cycle
AMC99_00935	PWY-5744	glyoxylate assimilation
AMC99_00935	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMC99_00935	PWY-6722	candicidin biosynthesis
AMC99_00943	PWY-5663	tetrahydrobiopterin biosynthesis I
AMC99_00943	PWY-5664	tetrahydrobiopterin biosynthesis II
AMC99_00943	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AMC99_00943	PWY-6703	preQ<sub>0</sub> biosynthesis
AMC99_00943	PWY-6983	tetrahydrobiopterin biosynthesis III
AMC99_00943	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AMC99_00943	PWY-7852	AMC99_00943
AMC99_00946	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMC99_00955	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMC99_00962	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AMC99_00962	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMC99_00962	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AMC99_00973	PWY-3841	folate transformations II
AMC99_00973	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMC99_00973	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMC99_00973	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMC99_00973	PWY-7199	pyrimidine deoxyribonucleosides salvage
AMC99_00973	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMC99_00974	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AMC99_00982	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMC99_00982	PWY-5723	Rubisco shunt
AMC99_00982	PWY-6891	thiazole biosynthesis II (Bacillus)
AMC99_00982	PWY-6892	thiazole biosynthesis I (E. coli)
AMC99_00982	PWY-6901	superpathway of glucose and xylose degradation
AMC99_00982	PWY-7560	methylerythritol phosphate pathway II
AMC99_00983	PWY-1042	glycolysis IV (plant cytosol)
AMC99_00983	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMC99_00983	PWY-6901	superpathway of glucose and xylose degradation
AMC99_00983	PWY-7003	glycerol degradation to butanol
AMC99_00984	PWY-1042	glycolysis IV (plant cytosol)
AMC99_00984	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMC99_00984	PWY-6886	1-butanol autotrophic biosynthesis
AMC99_00984	PWY-6901	superpathway of glucose and xylose degradation
AMC99_00984	PWY-7003	glycerol degradation to butanol
AMC99_00986	PWY-1042	glycolysis IV (plant cytosol)
AMC99_00986	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMC99_00986	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMC99_00986	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMC99_00986	PWY-7385	1,3-propanediol biosynthesis (engineered)
AMC99_00989	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AMC99_00989	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AMC99_00989	PWY-6897	thiamin salvage II
AMC99_00989	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AMC99_00989	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AMC99_00989	PWY-7356	thiamin salvage IV (yeast)
AMC99_00989	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AMC99_00995	PWY-2301	<i>myo</i>-inositol biosynthesis
AMC99_00995	PWY-4702	phytate degradation I
AMC99_00995	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
AMC99_01001	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMC99_01010	PWY-6654	phosphopantothenate biosynthesis III
AMC99_01031	PWY-7805	AMC99_01031
AMC99_01031	PWY-7807	AMC99_01031
AMC99_01035	PWY-723	alkylnitronates degradation
AMC99_01040	PWY-6871	3-methylbutanol biosynthesis
AMC99_01046	PWY-5103	L-isoleucine biosynthesis III
AMC99_01046	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMC99_01047	PWY-5101	L-isoleucine biosynthesis II
AMC99_01047	PWY-5103	L-isoleucine biosynthesis III
AMC99_01047	PWY-5104	L-isoleucine biosynthesis IV
AMC99_01047	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AMC99_01047	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AMC99_01047	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AMC99_01047	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMC99_01048	PWY-5101	L-isoleucine biosynthesis II
AMC99_01048	PWY-5103	L-isoleucine biosynthesis III
AMC99_01048	PWY-5104	L-isoleucine biosynthesis IV
AMC99_01048	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AMC99_01048	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AMC99_01048	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AMC99_01048	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMC99_01049	PWY-2781	<i>cis</i>-zeatin biosynthesis
AMC99_01053	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMC99_01053	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMC99_01053	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMC99_01058	PWY-7851	AMC99_01058
AMC99_01060	PWY-6700	queuosine biosynthesis
AMC99_01064	PWY-6700	queuosine biosynthesis
AMC99_01069	PWY-3461	L-tyrosine biosynthesis II
AMC99_01069	PWY-3462	L-phenylalanine biosynthesis II
AMC99_01069	PWY-6120	L-tyrosine biosynthesis III
AMC99_01069	PWY-6406	salicylate biosynthesis I
AMC99_01069	PWY-6627	salinosporamide A biosynthesis
AMC99_01069	PWY-7626	bacilysin biosynthesis
AMC99_01073	PWY-1622	formaldehyde assimilation I (serine pathway)
AMC99_01073	PWY-181	photorespiration
AMC99_01073	PWY-2161	folate polyglutamylation
AMC99_01073	PWY-2201	folate transformations I
AMC99_01073	PWY-3661	glycine betaine degradation I
AMC99_01073	PWY-3661-1	glycine betaine degradation II (mammalian)
AMC99_01073	PWY-3841	folate transformations II
AMC99_01073	PWY-5497	purine nucleobases degradation II (anaerobic)
AMC99_01079	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMC99_01079	PWY-5686	UMP biosynthesis
AMC99_01079	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMC99_01079	PWY-7790	AMC99_01079
AMC99_01079	PWY-7791	AMC99_01079
AMC99_01080	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMC99_01080	PWY-5686	UMP biosynthesis
AMC99_01080	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMC99_01080	PWY-7790	AMC99_01080
AMC99_01080	PWY-7791	AMC99_01080
AMC99_01088	PWY-1042	glycolysis IV (plant cytosol)
AMC99_01088	PWY-1622	formaldehyde assimilation I (serine pathway)
AMC99_01088	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMC99_01088	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMC99_01088	PWY-5723	Rubisco shunt
AMC99_01088	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMC99_01088	PWY-6886	1-butanol autotrophic biosynthesis
AMC99_01088	PWY-6901	superpathway of glucose and xylose degradation
AMC99_01088	PWY-7003	glycerol degradation to butanol
AMC99_01088	PWY-7124	ethylene biosynthesis V (engineered)
AMC99_01088	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMC99_01091	PWY-6167	flavin biosynthesis II (archaea)
AMC99_01091	PWY-6168	flavin biosynthesis III (fungi)
AMC99_01092	PWY-6167	flavin biosynthesis II (archaea)
AMC99_01092	PWY-6168	flavin biosynthesis III (fungi)
AMC99_01092	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMC99_01092	PWY-7991	AMC99_01092
AMC99_01095	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMC99_01095	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMC99_01095	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMC99_01095	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMC99_01096	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMC99_01096	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMC99_01106	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AMC99_01116	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMC99_01116	PWY-6549	L-glutamine biosynthesis III
AMC99_01116	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMC99_01116	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMC99_01124	PWY-6936	seleno-amino acid biosynthesis
AMC99_01166	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMC99_01173	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AMC99_01173	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMC99_01178	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMC99_01178	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMC99_01179	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMC99_01179	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMC99_01179	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMC99_01179	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AMC99_01179	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMC99_01179	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMC99_01193	PWY-7560	methylerythritol phosphate pathway II
AMC99_01196	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AMC99_01196	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AMC99_01197	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMC99_01197	PWY-5743	3-hydroxypropanoate cycle
AMC99_01197	PWY-5744	glyoxylate assimilation
AMC99_01197	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMC99_01197	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMC99_01197	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMC99_01197	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMC99_01220	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AMC99_01220	PWY-7177	UTP and CTP dephosphorylation II
AMC99_01220	PWY-7185	UTP and CTP dephosphorylation I
AMC99_01222	PWY-1042	glycolysis IV (plant cytosol)
AMC99_01222	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMC99_01222	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMC99_01222	PWY-7003	glycerol degradation to butanol
AMC99_01224	PWY-5958	acridone alkaloid biosynthesis
AMC99_01224	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AMC99_01224	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AMC99_01227	PWY-5958	acridone alkaloid biosynthesis
AMC99_01227	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AMC99_01227	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AMC99_01230	PWY-6823	molybdenum cofactor biosynthesis
AMC99_01231	PWY-6823	molybdenum cofactor biosynthesis
AMC99_01234	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMC99_01244	PWY-3961	phosphopantothenate biosynthesis II
AMC99_01245	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AMC99_01245	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AMC99_01247	PWY-3781	aerobic respiration I (cytochrome c)
AMC99_01247	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AMC99_01247	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AMC99_01247	PWY-6692	Fe(II) oxidation
AMC99_01248	PWY-3781	aerobic respiration I (cytochrome c)
AMC99_01248	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AMC99_01248	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AMC99_01248	PWY-6692	Fe(II) oxidation
AMC99_01275	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMC99_01275	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMC99_01275	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMC99_01275	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMC99_01285	PWY-3781	aerobic respiration I (cytochrome c)
AMC99_01285	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AMC99_01285	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMC99_01285	PWY-5690	TCA cycle II (plants and fungi)
AMC99_01285	PWY-6728	methylaspartate cycle
AMC99_01285	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMC99_01285	PWY-7254	TCA cycle VII (acetate-producers)
AMC99_01285	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMC99_01293	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMC99_01293	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AMC99_01293	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AMC99_01303	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMC99_01303	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AMC99_01303	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AMC99_01308	PWY-6938	NADH repair
AMC99_01310	PWY-5101	L-isoleucine biosynthesis II
AMC99_01310	PWY-5103	L-isoleucine biosynthesis III
AMC99_01310	PWY-5104	L-isoleucine biosynthesis IV
AMC99_01310	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMC99_01312	PWY-7560	methylerythritol phosphate pathway II
AMC99_01328	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMC99_01328	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMC99_01328	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMC99_01328	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMC99_01337	PWY-5392	reductive TCA cycle II
AMC99_01337	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMC99_01342	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AMC99_01342	PWY-6596	adenosine nucleotides degradation I
AMC99_01342	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMC99_01353	PWY-3781	aerobic respiration I (cytochrome c)
AMC99_01353	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AMC99_01353	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMC99_01353	PWY-5690	TCA cycle II (plants and fungi)
AMC99_01353	PWY-6728	methylaspartate cycle
AMC99_01353	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMC99_01353	PWY-7254	TCA cycle VII (acetate-producers)
AMC99_01353	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMC99_01384	PWY-5367	petroselinate biosynthesis
AMC99_01384	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMC99_01384	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMC99_01384	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMC99_01384	PWY-5994	palmitate biosynthesis I (animals and fungi)
AMC99_01384	PWY-6113	superpathway of mycolate biosynthesis
AMC99_01384	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMC99_01384	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMC99_01384	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMC99_01384	PWY-7663	gondoate biosynthesis (anaerobic)
AMC99_01384	PWY-7664	oleate biosynthesis IV (anaerobic)
AMC99_01384	PWY-7858	AMC99_01384
AMC99_01384	PWYG-321	mycolate biosynthesis
AMC99_01385	PWY-4381	fatty acid biosynthesis initiation I
AMC99_01385	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AMC99_01385	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMC99_01394	PWY-6617	adenosine nucleotides degradation III
AMC99_01402	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMC99_01408	PWY-2941	L-lysine biosynthesis II
AMC99_01408	PWY-2942	L-lysine biosynthesis III
AMC99_01408	PWY-5097	L-lysine biosynthesis VI
AMC99_01408	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMC99_01408	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AMC99_01408	PWY-6559	spermidine biosynthesis II
AMC99_01408	PWY-6562	norspermidine biosynthesis
AMC99_01408	PWY-7153	grixazone biosynthesis
AMC99_01408	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMC99_01408	PWY-7977	AMC99_01408
AMC99_01411	PWY-6829	tRNA methylation (yeast)
AMC99_01411	PWY-7285	methylwyosine biosynthesis
AMC99_01411	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AMC99_01419	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMC99_01421	PWY-7205	CMP phosphorylation
AMC99_01425	PWY-5386	methylglyoxal degradation I
AMC99_01437	PWY-6123	inosine-5'-phosphate biosynthesis I
AMC99_01437	PWY-6124	inosine-5'-phosphate biosynthesis II
AMC99_01437	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMC99_01437	PWY-7234	inosine-5'-phosphate biosynthesis III
AMC99_01439	PWY-5686	UMP biosynthesis
AMC99_01439	PWY-7790	AMC99_01439
AMC99_01439	PWY-7791	AMC99_01439
AMC99_01444	PWY-4381	fatty acid biosynthesis initiation I
AMC99_01444	PWY-5743	3-hydroxypropanoate cycle
AMC99_01444	PWY-5744	glyoxylate assimilation
AMC99_01444	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMC99_01444	PWY-6722	candicidin biosynthesis
AMC99_01445	PWY-2161	folate polyglutamylation
AMC99_01460	PWY-5913	TCA cycle VI (obligate autotrophs)
AMC99_01460	PWY-6549	L-glutamine biosynthesis III
AMC99_01460	PWY-6728	methylaspartate cycle
AMC99_01460	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMC99_01460	PWY-7124	ethylene biosynthesis V (engineered)
AMC99_01460	PWY-7254	TCA cycle VII (acetate-producers)
AMC99_01460	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMC99_01471	PWY-2941	L-lysine biosynthesis II
AMC99_01471	PWY-2942	L-lysine biosynthesis III
AMC99_01471	PWY-5097	L-lysine biosynthesis VI
AMC99_01486	PWY-4983	L-citrulline-nitric oxide cycle
AMC99_01486	PWY-4984	urea cycle
AMC99_01486	PWY-5	canavanine biosynthesis
AMC99_01486	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMC99_01486	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMC99_01505	PWY-1622	formaldehyde assimilation I (serine pathway)
AMC99_01505	PWY-5392	reductive TCA cycle II
AMC99_01505	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMC99_01505	PWY-5690	TCA cycle II (plants and fungi)
AMC99_01505	PWY-5913	TCA cycle VI (obligate autotrophs)
AMC99_01505	PWY-6728	methylaspartate cycle
AMC99_01505	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMC99_01505	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMC99_01505	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMC99_01506	PWY-5392	reductive TCA cycle II
AMC99_01506	PWY-5537	pyruvate fermentation to acetate V
AMC99_01506	PWY-5538	pyruvate fermentation to acetate VI
AMC99_01506	PWY-5690	TCA cycle II (plants and fungi)
AMC99_01506	PWY-5913	TCA cycle VI (obligate autotrophs)
AMC99_01506	PWY-6728	methylaspartate cycle
AMC99_01506	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMC99_01506	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMC99_01507	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMC99_01508	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMC99_01509	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AMC99_01509	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMC99_01515	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AMC99_01524	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMC99_01582	PWY-7921	AMC99_01582
AMC99_01582	PWY-7922	AMC99_01582
AMC99_01582	PWY-7979	AMC99_01582
AMC99_01584	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AMC99_01590	PWY-5057	L-valine degradation II
AMC99_01590	PWY-5076	L-leucine degradation III
AMC99_01590	PWY-5078	L-isoleucine degradation II
AMC99_01590	PWY-5101	L-isoleucine biosynthesis II
AMC99_01590	PWY-5103	L-isoleucine biosynthesis III
AMC99_01590	PWY-5104	L-isoleucine biosynthesis IV
AMC99_01590	PWY-5108	L-isoleucine biosynthesis V
AMC99_01590	PWY-7767	AMC99_01590
AMC99_01593	PWY-5381	pyridine nucleotide cycling (plants)
AMC99_01593	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AMC99_01593	PWY-7761	AMC99_01593
AMC99_01598	PWY-7255	ergothioneine biosynthesis I (bacteria)
AMC99_01598	PWY-7550	ergothioneine biosynthesis II (fungi)
AMC99_01599	PWY-7255	ergothioneine biosynthesis I (bacteria)
AMC99_01601	PWY-6164	3-dehydroquinate biosynthesis I
AMC99_01623	PWY-5381	pyridine nucleotide cycling (plants)
AMC99_01623	PWY-7761	AMC99_01623
AMC99_01631	PWY-5839	menaquinol-7 biosynthesis
AMC99_01631	PWY-5844	menaquinol-9 biosynthesis
AMC99_01631	PWY-5849	menaquinol-6 biosynthesis
AMC99_01631	PWY-5890	menaquinol-10 biosynthesis
AMC99_01631	PWY-5891	menaquinol-11 biosynthesis
AMC99_01631	PWY-5892	menaquinol-12 biosynthesis
AMC99_01631	PWY-5895	menaquinol-13 biosynthesis
AMC99_01634	PWY-4381	fatty acid biosynthesis initiation I
AMC99_01648	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AMC99_01649	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMC99_01649	PWY-5723	Rubisco shunt
AMC99_01662	PWY-7980	AMC99_01662
AMC99_01664	PWY-7980	AMC99_01664
AMC99_01672	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AMC99_01720	PWY-6123	inosine-5'-phosphate biosynthesis I
AMC99_01720	PWY-6124	inosine-5'-phosphate biosynthesis II
AMC99_01720	PWY-7234	inosine-5'-phosphate biosynthesis III
AMC99_01724	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMC99_01724	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMC99_01724	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMC99_01725	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMC99_01725	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMC99_01725	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMC99_01727	PWY-6749	CMP-legionaminate biosynthesis I
AMC99_01743	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMC99_01743	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMC99_01753	PWY-6614	tetrahydrofolate biosynthesis
AMC99_01769	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AMC99_01770	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AMC99_01776	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMC99_01776	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMC99_01797	PWY-4983	L-citrulline-nitric oxide cycle
AMC99_01797	PWY-4984	urea cycle
AMC99_01797	PWY-5	canavanine biosynthesis
AMC99_01797	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMC99_01797	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMC99_01799	PWY-2941	L-lysine biosynthesis II
AMC99_01799	PWY-2942	L-lysine biosynthesis III
AMC99_01799	PWY-5097	L-lysine biosynthesis VI
AMC99_01800	PWY-5194	siroheme biosynthesis
AMC99_01800	PWY-5196	factor 430 biosynthesis
AMC99_01800	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMC99_01803	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMC99_01807	PWY-7805	AMC99_01807
AMC99_01807	PWY-7807	AMC99_01807
AMC99_01835	PWY-6700	queuosine biosynthesis
AMC99_01838	PWY-5350	thiosulfate disproportionation III (rhodanese)
AMC99_01838	PWY-7927	AMC99_01838
AMC99_01841	PWY-5194	siroheme biosynthesis
AMC99_01841	PWY-5196	factor 430 biosynthesis
AMC99_01841	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMC99_01843	PWY-6683	sulfate reduction III (assimilatory)
AMC99_01848	PWY-3341	L-proline biosynthesis III
AMC99_01848	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMC99_01855	PWY-3341	L-proline biosynthesis III
AMC99_01855	PWY-4981	L-proline biosynthesis II (from arginine)
AMC99_01855	PWY-6344	L-ornithine degradation II (Stickland reaction)
AMC99_01861	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMC99_01861	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMC99_01861	PWY-7953	AMC99_01861
AMC99_01863	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMC99_01863	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMC99_01863	PWY-7953	AMC99_01863
AMC99_01864	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMC99_01864	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMC99_01864	PWY-7953	AMC99_01864
AMC99_01865	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMC99_01865	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMC99_01865	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMC99_01865	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMC99_01866	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMC99_01866	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMC99_01866	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMC99_01866	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMC99_01867	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMC99_01867	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMC99_01868	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMC99_01868	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMC99_01868	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMC99_01869	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMC99_01869	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMC99_01869	PWY-7953	AMC99_01869
AMC99_01882	PWY-7158	L-phenylalanine degradation V
AMC99_01886	PWY-7799	AMC99_01886
AMC99_01886	PWY-7800	AMC99_01886
AMC99_01890	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMC99_01890	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMC99_01893	PWY-381	nitrate reduction II (assimilatory)
AMC99_01893	PWY-5675	nitrate reduction V (assimilatory)
AMC99_01893	PWY-6549	L-glutamine biosynthesis III
AMC99_01893	PWY-6963	ammonia assimilation cycle I
AMC99_01893	PWY-6964	ammonia assimilation cycle II
AMC99_01903	PWY-7802	AMC99_01903
AMC99_01917	PWY-7560	methylerythritol phosphate pathway II
AMC99_01918	PWY-702	L-methionine biosynthesis II
AMC99_01959	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AMC99_01974	PWY-6703	preQ<sub>0</sub> biosynthesis
AMC99_01986	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AMC99_01986	PWY-7820	AMC99_01986
AMC99_01993	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMC99_01993	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMC99_01993	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMC99_01993	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMC99_01997	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMC99_02004	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AMC99_02017	PWY-5686	UMP biosynthesis
AMC99_02017	PWY-7790	AMC99_02017
AMC99_02017	PWY-7791	AMC99_02017
AMC99_02020	PWY-3341	L-proline biosynthesis III
AMC99_02020	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMC99_02021	PWY-3341	L-proline biosynthesis III
AMC99_02021	PWY-4981	L-proline biosynthesis II (from arginine)
AMC99_02021	PWY-6344	L-ornithine degradation II (Stickland reaction)
AMC99_02022	PWY-3341	L-proline biosynthesis III
AMC99_02022	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMC99_02026	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AMC99_02027	PWY-5381	pyridine nucleotide cycling (plants)
AMC99_02027	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AMC99_02027	PWY-6596	adenosine nucleotides degradation I
AMC99_02027	PWY-6606	guanosine nucleotides degradation II
AMC99_02027	PWY-6607	guanosine nucleotides degradation I
AMC99_02027	PWY-6608	guanosine nucleotides degradation III
AMC99_02027	PWY-7185	UTP and CTP dephosphorylation I
AMC99_02027	PWY-7821	AMC99_02027
AMC99_02034	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMC99_02035	PWY-5101	L-isoleucine biosynthesis II
AMC99_02035	PWY-5103	L-isoleucine biosynthesis III
AMC99_02035	PWY-5104	L-isoleucine biosynthesis IV
AMC99_02035	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMC99_02036	PWY-2722	trehalose degradation IV
AMC99_02036	PWY-2723	trehalose degradation V
AMC99_02036	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AMC99_02036	PWY-5661	GDP-glucose biosynthesis
AMC99_02036	PWY-621	sucrose degradation III (sucrose invertase)
AMC99_02036	PWY-7238	sucrose biosynthesis II
AMC99_02036	PWY-7385	1,3-propanediol biosynthesis (engineered)
AMC99_02037	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMC99_02037	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AMC99_02037	PWY-7242	D-fructuronate degradation
AMC99_02037	PWY-7310	D-glucosaminate degradation
AMC99_02037	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AMC99_02038	PWY-1622	formaldehyde assimilation I (serine pathway)
AMC99_02038	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMC99_02038	PWY-5913	TCA cycle VI (obligate autotrophs)
AMC99_02038	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMC99_02038	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AMC99_02038	PWY-6549	L-glutamine biosynthesis III
AMC99_02038	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMC99_02038	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMC99_02038	PWY-7124	ethylene biosynthesis V (engineered)
AMC99_02047	PWY-4261	glycerol degradation I
AMC99_02051	PWY-5316	nicotine biosynthesis
AMC99_02051	PWY-7342	superpathway of nicotine biosynthesis
AMC99_02058	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AMC99_02058	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AMC99_02143	PWY-7991	AMC99_02143
AMC99_02144	PWY-6167	flavin biosynthesis II (archaea)
AMC99_02144	PWY-6168	flavin biosynthesis III (fungi)
AMC99_02144	PWY-7980	AMC99_02144
AMC99_02149	PWY-5913	TCA cycle VI (obligate autotrophs)
AMC99_02149	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AMC99_02149	PWY-6638	sulfolactate degradation III
AMC99_02149	PWY-6642	(<i>R</i>)-cysteate degradation
AMC99_02149	PWY-6643	coenzyme M biosynthesis II
AMC99_02149	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMC99_02149	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMC99_02149	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMC99_02171	PWY-3861	mannitol degradation II
AMC99_02171	PWY-3881	mannitol biosynthesis
AMC99_02171	PWY-5659	GDP-mannose biosynthesis
AMC99_02171	PWY-6992	1,5-anhydrofructose degradation
AMC99_02171	PWY-7456	mannan degradation
AMC99_02171	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
AMC99_02171	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AMC99_02183	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMC99_02183	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AMC99_02183	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AMC99_02225	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AMC99_02225	PWY-6148	tetrahydromethanopterin biosynthesis
AMC99_02225	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AMC99_02225	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMC99_02225	PWY-7852	AMC99_02225
AMC99_02225	PWY-7853	AMC99_02225
AMC99_02227	PWY-43	putrescine biosynthesis II
AMC99_02241	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMC99_02241	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMC99_02241	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMC99_02241	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMC99_02247	PWY-5344	L-homocysteine biosynthesis
AMC99_02250	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AMC99_02259	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
AMC99_02259	PWY-6853	ethylene biosynthesis II (microbes)
AMC99_02259	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMC99_02275	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AMC99_02275	PWY-2201	folate transformations I
AMC99_02275	PWY-3841	folate transformations II
AMC99_02275	PWY-5030	L-histidine degradation III
AMC99_02275	PWY-5497	purine nucleobases degradation II (anaerobic)
AMC99_02275	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AMC99_02275	PWY-7909	AMC99_02275
AMC99_02277	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMC99_02277	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMC99_02282	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMC99_02282	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMC99_02282	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMC99_02282	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMC99_02282	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMC99_02282	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMC99_02282	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMC99_02282	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMC99_02287	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMC99_02287	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMC99_02287	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMC99_02287	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMC99_02287	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMC99_02287	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMC99_02287	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMC99_02287	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMC99_02291	PWY-5316	nicotine biosynthesis
AMC99_02291	PWY-7342	superpathway of nicotine biosynthesis
AMC99_02299	PWY-723	alkylnitronates degradation
AMC99_02303	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMC99_02316	PWY-4381	fatty acid biosynthesis initiation I
AMC99_02316	PWY-5743	3-hydroxypropanoate cycle
AMC99_02316	PWY-5744	glyoxylate assimilation
AMC99_02316	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMC99_02316	PWY-6722	candicidin biosynthesis
AMC99_02331	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMC99_02332	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AMC99_02332	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AMC99_02332	PWY-6897	thiamin salvage II
AMC99_02332	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AMC99_02332	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AMC99_02332	PWY-7356	thiamin salvage IV (yeast)
AMC99_02332	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AMC99_02343	PWY-5958	acridone alkaloid biosynthesis
AMC99_02343	PWY-6543	4-aminobenzoate biosynthesis
AMC99_02343	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AMC99_02343	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AMC99_02348	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AMC99_02348	PWY-5491	diethylphosphate degradation
AMC99_02350	PWY-6168	flavin biosynthesis III (fungi)
AMC99_02350	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMC99_02350	PWY-7991	AMC99_02350
AMC99_02363	PWY-6134	L-tyrosine biosynthesis IV
AMC99_02363	PWY-7158	L-phenylalanine degradation V
AMC99_02366	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
AMC99_02393	PWY-5676	acetyl-CoA fermentation to butanoate II
AMC99_02393	PWY-5741	ethylmalonyl-CoA pathway
AMC99_02393	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMC99_02393	PWY-7948	AMC99_02393
AMC99_02396	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMC99_02396	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMC99_02396	PWY-7953	AMC99_02396
AMC99_02397	PWY-3801	sucrose degradation II (sucrose synthase)
AMC99_02397	PWY-6527	stachyose degradation
AMC99_02397	PWY-7238	sucrose biosynthesis II
AMC99_02397	PWY-7343	UDP-glucose biosynthesis
AMC99_02397	PWY-7817	AMC99_02397
AMC99_02405	PWY-43	putrescine biosynthesis II
AMC99_02419	PWY-5022	4-aminobutanoate degradation V
AMC99_02419	PWY-6728	methylaspartate cycle
AMC99_02419	PWY-7126	ethylene biosynthesis IV
AMC99_02422	PWY-6700	queuosine biosynthesis
AMC99_02440	PWY-6891	thiazole biosynthesis II (Bacillus)
AMC99_02440	PWY-6892	thiazole biosynthesis I (E. coli)
AMC99_02440	PWY-7560	methylerythritol phosphate pathway II
AMC99_02444	PWY-6123	inosine-5'-phosphate biosynthesis I
AMC99_02444	PWY-6124	inosine-5'-phosphate biosynthesis II
AMC99_02444	PWY-7234	inosine-5'-phosphate biosynthesis III
AMC99_02446	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMC99_02446	PWY-5723	Rubisco shunt
AMC99_02474	PWY-5316	nicotine biosynthesis
AMC99_02474	PWY-5381	pyridine nucleotide cycling (plants)
AMC99_02474	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AMC99_02474	PWY-7342	superpathway of nicotine biosynthesis
AMC99_02482	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMC99_02482	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMC99_02482	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMC99_02493	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AMC99_02504	PWY-5686	UMP biosynthesis
AMC99_02505	PWY-4041	&gamma;-glutamyl cycle
AMC99_02505	PWY-4061	glutathione-mediated detoxification I
AMC99_02505	PWY-5826	hypoglycin biosynthesis
AMC99_02505	PWY-6842	glutathione-mediated detoxification II
AMC99_02505	PWY-7112	4-hydroxy-2-nonenal detoxification
AMC99_02505	PWY-7559	glutathione degradation (DUG pathway - yeast)
AMC99_02508	PWY-6891	thiazole biosynthesis II (Bacillus)
AMC99_02508	PWY-6892	thiazole biosynthesis I (E. coli)
AMC99_02523	PWY-5392	reductive TCA cycle II
AMC99_02523	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMC99_02523	PWY-5690	TCA cycle II (plants and fungi)
AMC99_02523	PWY-5913	TCA cycle VI (obligate autotrophs)
AMC99_02523	PWY-6728	methylaspartate cycle
AMC99_02523	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMC99_02523	PWY-7254	TCA cycle VII (acetate-producers)
AMC99_02523	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMC99_02538	PWY-7851	AMC99_02538
AMC99_02539	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMC99_02542	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AMC99_02542	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AMC99_02542	PWY-7766	AMC99_02542
AMC99_02544	PWY-7980	AMC99_02544
AMC99_02570	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMC99_02570	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMC99_02587	PWY-3341	L-proline biosynthesis III
AMC99_02587	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMC99_02588	PWY-5381	pyridine nucleotide cycling (plants)
AMC99_02588	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AMC99_02588	PWY-7761	AMC99_02588
AMC99_02599	PWY-3221	dTDP-L-rhamnose biosynthesis II
AMC99_02599	PWY-6808	dTDP-D-forosamine biosynthesis
AMC99_02599	PWY-6942	dTDP-D-desosamine biosynthesis
AMC99_02599	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AMC99_02599	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AMC99_02599	PWY-6974	dTDP-L-olivose biosynthesis
AMC99_02599	PWY-6976	dTDP-L-mycarose biosynthesis
AMC99_02599	PWY-7104	dTDP-L-megosamine biosynthesis
AMC99_02599	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AMC99_02599	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AMC99_02599	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AMC99_02599	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AMC99_02599	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AMC99_02599	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AMC99_02599	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AMC99_02599	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AMC99_02599	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AMC99_02599	PWY-7688	AMC99_02599
AMC99_02599	PWY-7814	AMC99_02599
AMC99_02601	PWY-3221	dTDP-L-rhamnose biosynthesis II
AMC99_02601	PWY-6808	dTDP-D-forosamine biosynthesis
AMC99_02601	PWY-6942	dTDP-D-desosamine biosynthesis
AMC99_02601	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AMC99_02601	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AMC99_02601	PWY-6974	dTDP-L-olivose biosynthesis
AMC99_02601	PWY-6976	dTDP-L-mycarose biosynthesis
AMC99_02601	PWY-7104	dTDP-L-megosamine biosynthesis
AMC99_02601	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AMC99_02601	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AMC99_02601	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AMC99_02601	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AMC99_02601	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AMC99_02601	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AMC99_02601	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AMC99_02601	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AMC99_02601	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AMC99_02601	PWY-7688	AMC99_02601
AMC99_02601	PWY-7814	AMC99_02601
AMC99_02619	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMC99_02619	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMC99_02619	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMC99_02619	PWY-6113	superpathway of mycolate biosynthesis
AMC99_02619	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMC99_02619	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMC99_02619	PWY-7663	gondoate biosynthesis (anaerobic)
AMC99_02619	PWY-7664	oleate biosynthesis IV (anaerobic)
AMC99_02619	PWY-7858	AMC99_02619
AMC99_02619	PWYG-321	mycolate biosynthesis
AMC99_02622	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMC99_02622	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMC99_02628	PWY-7887	AMC99_02628
AMC99_02628	PWY-7892	AMC99_02628
AMC99_02639	PWY-5392	reductive TCA cycle II
AMC99_02639	PWY-5537	pyruvate fermentation to acetate V
AMC99_02639	PWY-5538	pyruvate fermentation to acetate VI
AMC99_02639	PWY-5690	TCA cycle II (plants and fungi)
AMC99_02639	PWY-5913	TCA cycle VI (obligate autotrophs)
AMC99_02639	PWY-6728	methylaspartate cycle
AMC99_02639	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMC99_02639	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMC99_02645	PWY-7884	AMC99_02645
AMC99_02647	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AMC99_02647	PWY-6167	flavin biosynthesis II (archaea)
AMC99_02647	PWY-6168	flavin biosynthesis III (fungi)
AMC99_02647	PWY-7863	AMC99_02647
AMC99_02648	PWY-7533	gliotoxin biosynthesis
AMC99_02649	PWY-3841	folate transformations II
AMC99_02649	PWY-6614	tetrahydrofolate biosynthesis
AMC99_02651	PWY-6123	inosine-5'-phosphate biosynthesis I
AMC99_02651	PWY-7234	inosine-5'-phosphate biosynthesis III
AMC99_02652	PWY-1622	formaldehyde assimilation I (serine pathway)
AMC99_02652	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMC99_02664	PWY-3781	aerobic respiration I (cytochrome c)
AMC99_02664	PWY-6692	Fe(II) oxidation
AMC99_02664	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
AMC99_02664	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMC99_02667	PWY-6605	adenine and adenosine salvage II
AMC99_02667	PWY-6610	adenine and adenosine salvage IV
AMC99_02667	PWY-7805	AMC99_02667
AMC99_02667	PWY-7807	AMC99_02667
AMC99_02675	PWY-6749	CMP-legionaminate biosynthesis I
AMC99_02688	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMC99_02704	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMC99_02704	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMC99_02710	PWY-7511	protein ubiquitylation
AMC99_02711	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AMC99_02711	PWY-7494	choline degradation IV
AMC99_02718	PWY-4981	L-proline biosynthesis II (from arginine)
AMC99_02718	PWY-4984	urea cycle
AMC99_02718	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMC99_02721	PWY-6703	preQ<sub>0</sub> biosynthesis
AMC99_02723	PWY-6854	ethylene biosynthesis III (microbes)
AMC99_02749	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AMC99_02749	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AMC99_02749	PWY-7717	AMC99_02749
AMC99_02749	PWY-7733	AMC99_02749
AMC99_02749	PWY-7734	AMC99_02749
AMC99_02749	PWY-7765	AMC99_02749
AMC99_02750	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AMC99_02750	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AMC99_02755	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMC99_02755	PWY-5109	2-methylbutanoate biosynthesis
AMC99_02755	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMC99_02755	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AMC99_02755	PWY-5177	glutaryl-CoA degradation
AMC99_02755	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMC99_02755	PWY-6435	4-hydroxybenzoate biosynthesis V
AMC99_02755	PWY-6583	pyruvate fermentation to butanol I
AMC99_02755	PWY-6863	pyruvate fermentation to hexanol
AMC99_02755	PWY-6883	pyruvate fermentation to butanol II
AMC99_02755	PWY-6944	androstenedione degradation
AMC99_02755	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMC99_02755	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMC99_02755	PWY-7007	methyl ketone biosynthesis
AMC99_02755	PWY-7046	4-coumarate degradation (anaerobic)
AMC99_02755	PWY-7094	fatty acid salvage
AMC99_02755	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMC99_02755	PWY-735	jasmonic acid biosynthesis
AMC99_02755	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AMC99_02755	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMC99_02755	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AMC99_02755	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AMC99_02755	PWY-7726	AMC99_02755
AMC99_02755	PWY-7778	AMC99_02755
AMC99_02755	PWY-7779	AMC99_02755
AMC99_02760	PWY-1281	sulfoacetaldehyde degradation I
AMC99_02760	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMC99_02760	PWY-5482	pyruvate fermentation to acetate II
AMC99_02760	PWY-5485	pyruvate fermentation to acetate IV
AMC99_02760	PWY-5497	purine nucleobases degradation II (anaerobic)
AMC99_02760	PWY-6637	sulfolactate degradation II
AMC99_02760	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMC99_02772	PWY-7805	AMC99_02772
AMC99_02772	PWY-7807	AMC99_02772
AMC99_02779	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMC99_02779	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AMC99_02811	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMC99_02814	PWY-1042	glycolysis IV (plant cytosol)
AMC99_02814	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMC99_02814	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMC99_02814	PWY-5723	Rubisco shunt
AMC99_02814	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMC99_02814	PWY-6886	1-butanol autotrophic biosynthesis
AMC99_02814	PWY-6901	superpathway of glucose and xylose degradation
AMC99_02814	PWY-7003	glycerol degradation to butanol
AMC99_02814	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMC99_02814	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
