AMC99_00011 SM00530 Helix-turn-helix XRE-family like proteins AMC99_00012 SM00267 diguanylate cyclase AMC99_00019 SM00564 beta-propeller repeat AMC99_00020 SM00244 prohibitin homologues AMC99_00030 SM00470 ParB-like nuclease domain AMC99_00032 SM00530 Helix-turn-helix XRE-family like proteins AMC99_00055 SM00507 HNH nucleases AMC99_00056 SM00487 DEAD-like helicases superfamily AMC99_00056 SM00490 helicase superfamily c-terminal domain AMC99_00062 SM00530 Helix-turn-helix XRE-family like proteins AMC99_00074 SM00382 ATPases associated with a variety of cellular activities AMC99_00089 SM00422 helix_turn_helix, mercury resistance AMC99_00102 SM00671 Sel1-like repeats. AMC99_00107 SM00671 Sel1-like repeats. AMC99_00111 SM00448 cheY-homologous receiver domain AMC99_00111 SM00862 Transcriptional regulatory protein, C terminal AMC99_00112 SM00387 Histidine kinase-like ATPases AMC99_00114 SM00028 Tetratricopeptide repeats AMC99_00115 SM00671 Sel1-like repeats. AMC99_00123 SM00947 Carbonic anhydrase AMC99_00127 SM00100 Cyclic nucleotide-monophosphate binding domain AMC99_00129 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMC99_00134 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_00137 SM00852 Probable molybdopterin binding domain AMC99_00138 SM00852 Probable molybdopterin binding domain AMC99_00156 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMC99_00158 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMC99_00158 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMC99_00168 SM00382 ATPases associated with a variety of cellular activities AMC99_00184 SM00984 UDP binding domain AMC99_00192 SM00382 ATPases associated with a variety of cellular activities AMC99_00195 SM00382 ATPases associated with a variety of cellular activities AMC99_00200 SM01409 AMC99_00200 AMC99_00201 SM00155 Phospholipase D. Active site motifs. AMC99_00202 SM00382 ATPases associated with a variety of cellular activities AMC99_00213 SM00347 helix_turn_helix multiple antibiotic resistance protein AMC99_00215 SM00093 SERine Proteinase INhibitors AMC99_00216 SM00382 ATPases associated with a variety of cellular activities AMC99_00220 SM01234 AMC99_00220 AMC99_00230 SM00478 endonuclease III AMC99_00230 SM00525 AMC99_00230 AMC99_00238 SM00760 Bacterial dnaA protein helix-turn-helix domain AMC99_00240 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMC99_00240 SM01232 AMC99_00240 AMC99_00248 SM00862 Transcriptional regulatory protein, C terminal AMC99_00253 SM00978 AMC99_00253 AMC99_00254 SM00925 MltA specific insert domain AMC99_00259 SM00850 LytTr DNA-binding domain AMC99_00266 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMC99_00267 SM00382 ATPases associated with a variety of cellular activities AMC99_00271 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMC99_00272 SM00450 Rhodanese Homology Domain AMC99_00291 SM00382 ATPases associated with a variety of cellular activities AMC99_00300 SM00587 ZnF_C4 abd HLH domain containing kinases domain AMC99_00310 SM00911 HWE histidine kinase AMC99_00310 SM01079 AMC99_00310 AMC99_00311 SM00448 cheY-homologous receiver domain AMC99_00312 SM00100 Cyclic nucleotide-monophosphate binding domain AMC99_00312 SM00419 helix_turn_helix, cAMP Regulatory protein AMC99_00313 SM00448 cheY-homologous receiver domain AMC99_00324 SM00421 helix_turn_helix, Lux Regulon AMC99_00327 SM00862 Transcriptional regulatory protein, C terminal AMC99_00332 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMC99_00335 SM01018 B12 binding domain AMC99_00349 SM00354 helix_turn _helix lactose operon repressor AMC99_00350 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_00360 SM00419 helix_turn_helix, cAMP Regulatory protein AMC99_00375 SM00878 Biotin carboxylase C-terminal domain AMC99_00401 SM00357 Cold shock protein domain AMC99_00413 SM00151 SWI complex, BAF60b domains AMC99_00421 SM00829 Enoylreductase AMC99_00427 SM00072 Guanylate kinase homologues. AMC99_00444 SM00271 DnaJ molecular chaperone homology domain AMC99_00453 SM01263 AMC99_00453 AMC99_00455 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMC99_00455 SM00954 Region found in RelA / SpoT proteins AMC99_00457 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMC99_00457 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMC99_00487 SM00354 helix_turn _helix lactose operon repressor AMC99_00507 SM00100 Cyclic nucleotide-monophosphate binding domain AMC99_00507 SM00116 Domain in cystathionine beta-synthase and other proteins. AMC99_00508 SM00479 AMC99_00508 AMC99_00511 SM00091 PAS domain AMC99_00511 SM00387 Histidine kinase-like ATPases AMC99_00511 SM00388 His Kinase A (phosphoacceptor) domain AMC99_00511 SM00448 cheY-homologous receiver domain AMC99_00512 SM00421 helix_turn_helix, Lux Regulon AMC99_00512 SM00448 cheY-homologous receiver domain AMC99_00525 SM00421 helix_turn_helix, Lux Regulon AMC99_00526 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMC99_00526 SM00465 GIY-YIG type nucleases (URI domain) AMC99_00528 SM00487 DEAD-like helicases superfamily AMC99_00528 SM00490 helicase superfamily c-terminal domain AMC99_00531 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMC99_00539 SM00822 AMC99_00539 AMC99_00542 SM00271 DnaJ molecular chaperone homology domain AMC99_00557 SM00732 Likely ribonuclease with RNase H fold. AMC99_00575 SM00905 Dihydroneopterin aldolase AMC99_00577 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_00580 SM00100 Cyclic nucleotide-monophosphate binding domain AMC99_00580 SM00419 helix_turn_helix, cAMP Regulatory protein AMC99_00598 SM00564 beta-propeller repeat AMC99_00607 SM00422 helix_turn_helix, mercury resistance AMC99_00609 SM00491 AMC99_00609 AMC99_00611 SM00344 helix_turn_helix ASNC type AMC99_00620 SM00357 Cold shock protein domain AMC99_00627 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMC99_00634 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMC99_00635 SM00382 ATPases associated with a variety of cellular activities AMC99_00636 SM00267 diguanylate cyclase AMC99_00641 SM00388 His Kinase A (phosphoacceptor) domain AMC99_00642 SM00344 helix_turn_helix ASNC type AMC99_00646 SM00878 Biotin carboxylase C-terminal domain AMC99_00652 SM01323 AMC99_00652 AMC99_00656 SM00530 Helix-turn-helix XRE-family like proteins AMC99_00658 SM00986 Uracil DNA glycosylase superfamily AMC99_00658 SM00987 UreE urease accessory protein, C-terminal domain AMC99_00659 SM00382 ATPases associated with a variety of cellular activities AMC99_00662 SM00448 cheY-homologous receiver domain AMC99_00662 SM00862 Transcriptional regulatory protein, C terminal AMC99_00663 SM00387 Histidine kinase-like ATPases AMC99_00665 SM00830 Chorismate mutase type II AMC99_00668 SM00487 DEAD-like helicases superfamily AMC99_00668 SM00490 helicase superfamily c-terminal domain AMC99_00668 SM00847 Helicase associated domain (HA2) Add an annotation AMC99_00671 SM00382 ATPases associated with a variety of cellular activities AMC99_00674 SM00382 ATPases associated with a variety of cellular activities AMC99_00674 SM00464 Found in ATP-dependent protease La (LON) AMC99_00675 SM00411 bacterial (prokaryotic) histone like domain AMC99_00677 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMC99_00693 SM00935 Outer membrane protein (OmpH-like) AMC99_00698 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMC99_00700 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMC99_00711 SM00382 ATPases associated with a variety of cellular activities AMC99_00711 SM00962 SRP54-type protein, GTPase domain AMC99_00711 SM00963 SRP54-type protein, helical bundle domain AMC99_00712 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_00714 SM00052 Putative diguanylate phosphodiesterase AMC99_00714 SM00267 diguanylate cyclase AMC99_00723 SM00341 Helicase and RNase D C-terminal AMC99_00723 SM00474 3'-5' exonuclease AMC99_00726 SM00825 Beta-ketoacyl synthase AMC99_00739 SM01387 AMC99_00739 AMC99_00740 SM00316 Ribosomal protein S1-like RNA-binding domain AMC99_00740 SM00322 K homology RNA-binding domain AMC99_00747 SM00992 Hemimethylated DNA-binding protein YccV like AMC99_00760 SM00450 Rhodanese Homology Domain AMC99_00764 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMC99_00767 SM00849 Metallo-beta-lactamase superfamily AMC99_00772 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMC99_00784 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_00785 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_00790 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMC99_00801 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMC99_00801 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMC99_00809 SM00448 cheY-homologous receiver domain AMC99_00812 SM00327 von Willebrand factor (vWF) type A domain AMC99_00822 SM00487 DEAD-like helicases superfamily AMC99_00822 SM00490 helicase superfamily c-terminal domain AMC99_00827 SM00460 Transglutaminase/protease-like homologues AMC99_00829 SM00421 helix_turn_helix, Lux Regulon AMC99_00831 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMC99_00841 SM00382 ATPases associated with a variety of cellular activities AMC99_00860 SM00650 Ribosomal RNA adenine dimethylases AMC99_00868 SM00562 AMC99_00868 AMC99_00884 SM00448 cheY-homologous receiver domain AMC99_00901 SM01207 AMC99_00901 AMC99_00904 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMC99_00904 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMC99_00904 SM00493 AMC99_00904 AMC99_00906 SM00448 cheY-homologous receiver domain AMC99_00908 SM01022 AMC99_00908 AMC99_00910 SM00358 Double-stranded RNA binding motif AMC99_00910 SM00535 Ribonuclease III family AMC99_00915 SM00487 DEAD-like helicases superfamily AMC99_00915 SM00490 helicase superfamily c-terminal domain AMC99_00918 SM00530 Helix-turn-helix XRE-family like proteins AMC99_00924 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_00924 SM00876 Biotin and Thiamin Synthesis associated domain AMC99_00926 SM00878 Biotin carboxylase C-terminal domain AMC99_00942 SM00155 Phospholipase D. Active site motifs. AMC99_00946 SM00996 S-adenosyl-L-homocysteine hydrolase AMC99_00946 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMC99_00947 SM00091 PAS domain AMC99_00947 SM00387 Histidine kinase-like ATPases AMC99_00947 SM00388 His Kinase A (phosphoacceptor) domain AMC99_00958 SM00957 SecA DEAD-like domain AMC99_00958 SM00958 SecA preprotein cross-linking domain AMC99_00963 SM00052 Putative diguanylate phosphodiesterase AMC99_00964 SM00487 DEAD-like helicases superfamily AMC99_00964 SM00490 helicase superfamily c-terminal domain AMC99_00964 SM00982 AMC99_00964 AMC99_00964 SM01058 CarD-like/TRCF domain AMC99_00967 SM00487 DEAD-like helicases superfamily AMC99_00967 SM00490 helicase superfamily c-terminal domain AMC99_00968 SM00226 Low molecular weight phosphatase family AMC99_00970 SM00822 AMC99_00970 AMC99_00975 SM00861 Transketolase, pyrimidine binding domain AMC99_00982 SM00861 Transketolase, pyrimidine binding domain AMC99_00983 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMC99_00993 SM00841 Elongation factor P, C-terminal AMC99_00993 SM01185 AMC99_00993 AMC99_01002 SM00530 Helix-turn-helix XRE-family like proteins AMC99_01005 SM00387 Histidine kinase-like ATPases AMC99_01006 SM00382 ATPases associated with a variety of cellular activities AMC99_01006 SM00448 cheY-homologous receiver domain AMC99_01016 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_01017 SM00986 Uracil DNA glycosylase superfamily AMC99_01017 SM00987 UreE urease accessory protein, C-terminal domain AMC99_01018 SM00481 DNA polymerase alpha chain like domain AMC99_01021 SM00448 cheY-homologous receiver domain AMC99_01021 SM00862 Transcriptional regulatory protein, C terminal AMC99_01023 SM00382 ATPases associated with a variety of cellular activities AMC99_01029 SM00387 Histidine kinase-like ATPases AMC99_01029 SM00388 His Kinase A (phosphoacceptor) domain AMC99_01038 SM00327 von Willebrand factor (vWF) type A domain AMC99_01040 SM00917 LeuA allosteric (dimerisation) domain AMC99_01045 SM00867 YceI-like domain AMC99_01061 SM00382 ATPases associated with a variety of cellular activities AMC99_01068 SM00363 S4 RNA-binding domain AMC99_01068 SM01390 AMC99_01068 AMC99_01069 SM00830 Chorismate mutase type II AMC99_01076 SM00400 zinc finger AMC99_01076 SM00493 AMC99_01076 AMC99_01079 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AMC99_01080 SM00851 MGS-like domain AMC99_01080 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMC99_01088 SM01192 AMC99_01088 AMC99_01088 SM01193 AMC99_01088 AMC99_01100 SM00853 MutL C terminal dimerisation domain AMC99_01100 SM01340 AMC99_01100 AMC99_01111 SM00530 Helix-turn-helix XRE-family like proteins AMC99_01120 SM00422 helix_turn_helix, mercury resistance AMC99_01133 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMC99_01134 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMC99_01135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMC99_01136 SM00382 ATPases associated with a variety of cellular activities AMC99_01138 SM00091 PAS domain AMC99_01141 SM00387 Histidine kinase-like ATPases AMC99_01141 SM00433 TopoisomeraseII AMC99_01148 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_01149 SM00198 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. AMC99_01159 SM00271 DnaJ molecular chaperone homology domain AMC99_01160 SM00671 Sel1-like repeats. AMC99_01162 SM00382 ATPases associated with a variety of cellular activities AMC99_01166 SM01005 Alanine racemase, C-terminal domain AMC99_01168 SM00946 Prolyl-tRNA synthetase, C-terminal AMC99_01169 SM00955 AMC99_01169 AMC99_01178 SM00936 Penicillin-binding protein 5, C-terminal domain AMC99_01183 SM00849 Metallo-beta-lactamase superfamily AMC99_01188 SM00382 ATPases associated with a variety of cellular activities AMC99_01188 SM00448 cheY-homologous receiver domain AMC99_01189 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMC99_01189 SM00387 Histidine kinase-like ATPases AMC99_01189 SM00388 His Kinase A (phosphoacceptor) domain AMC99_01190 SM00382 ATPases associated with a variety of cellular activities AMC99_01190 SM00448 cheY-homologous receiver domain AMC99_01191 SM00387 Histidine kinase-like ATPases AMC99_01191 SM00388 His Kinase A (phosphoacceptor) domain AMC99_01196 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_01197 SM00947 Carbonic anhydrase AMC99_01200 SM00434 DNA Topoisomerase IV AMC99_01209 SM00861 Transketolase, pyrimidine binding domain AMC99_01231 SM00852 Probable molybdopterin binding domain AMC99_01237 SM00387 Histidine kinase-like ATPases AMC99_01243 SM00849 Metallo-beta-lactamase superfamily AMC99_01253 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMC99_01255 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMC99_01269 SM00862 Transcriptional regulatory protein, C terminal AMC99_01273 SM00937 AMC99_01273 AMC99_01276 SM00646 AMC99_01276 AMC99_01316 SM00852 Probable molybdopterin binding domain AMC99_01317 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_01322 SM00481 DNA polymerase alpha chain like domain AMC99_01326 SM00382 ATPases associated with a variety of cellular activities AMC99_01335 SM00014 Acid phosphatase homologues AMC99_01340 SM00028 Tetratricopeptide repeats AMC99_01342 SM00116 Domain in cystathionine beta-synthase and other proteins. AMC99_01342 SM01240 AMC99_01342 AMC99_01357 SM00849 Metallo-beta-lactamase superfamily AMC99_01361 SM00292 breast cancer carboxy-terminal domain AMC99_01361 SM00532 Ligase N family AMC99_01372 SM00052 Putative diguanylate phosphodiesterase AMC99_01372 SM00267 diguanylate cyclase AMC99_01373 SM00052 Putative diguanylate phosphodiesterase AMC99_01373 SM00267 diguanylate cyclase AMC99_01380 SM00829 Enoylreductase AMC99_01382 SM00480 DNA polymerase III beta subunit AMC99_01384 SM00822 AMC99_01384 AMC99_01385 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMC99_01396 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMC99_01396 SM00911 HWE histidine kinase AMC99_01404 SM00347 helix_turn_helix multiple antibiotic resistance protein AMC99_01408 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMC99_01416 SM00382 ATPases associated with a variety of cellular activities AMC99_01416 SM00962 SRP54-type protein, GTPase domain AMC99_01416 SM00963 SRP54-type protein, helical bundle domain AMC99_01424 SM00316 Ribosomal protein S1-like RNA-binding domain AMC99_01425 SM00849 Metallo-beta-lactamase superfamily AMC99_01426 SM00829 Enoylreductase AMC99_01437 SM00998 Adenylosuccinate lyase C-terminus AMC99_01439 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AMC99_01453 SM00487 DEAD-like helicases superfamily AMC99_01453 SM00490 helicase superfamily c-terminal domain AMC99_01458 SM00448 cheY-homologous receiver domain AMC99_01460 SM01329 AMC99_01460 AMC99_01465 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMC99_01467 SM00382 ATPases associated with a variety of cellular activities AMC99_01468 SM00387 Histidine kinase-like ATPases AMC99_01468 SM00388 His Kinase A (phosphoacceptor) domain AMC99_01468 SM00448 cheY-homologous receiver domain AMC99_01471 SM01130 AMC99_01471 AMC99_01488 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AMC99_01499 SM00382 ATPases associated with a variety of cellular activities AMC99_01504 SM00052 Putative diguanylate phosphodiesterase AMC99_01504 SM00267 diguanylate cyclase AMC99_01506 SM00881 CoA binding domain AMC99_01507 SM00861 Transketolase, pyrimidine binding domain AMC99_01511 SM00342 helix_turn_helix, arabinose operon control protein AMC99_01520 SM00662 RNA polymerases D AMC99_01535 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMC99_01536 SM01374 AMC99_01536 AMC99_01540 SM00322 K homology RNA-binding domain AMC99_01543 SM01382 AMC99_01543 AMC99_01543 SM01383 AMC99_01543 AMC99_01547 SM01403 AMC99_01547 AMC99_01549 SM00838 Elongation factor G C-terminus AMC99_01549 SM00889 Elongation factor G, domain IV AMC99_01557 SM00382 ATPases associated with a variety of cellular activities AMC99_01562 SM00858 AMC99_01562 AMC99_01569 SM00382 ATPases associated with a variety of cellular activities AMC99_01572 SM00028 Tetratricopeptide repeats AMC99_01584 SM01329 AMC99_01584 AMC99_01588 SM00363 S4 RNA-binding domain AMC99_01591 SM00450 Rhodanese Homology Domain AMC99_01600 SM00267 diguanylate cyclase AMC99_01603 SM00932 Scaffold protein Nfu/NifU N terminal AMC99_01609 SM00563 Phosphate acyltransferases AMC99_01611 SM01091 Transporter associated domain AMC99_01616 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_01620 SM00924 MgtE intracellular N domain AMC99_01626 SM00478 endonuclease III AMC99_01626 SM00525 AMC99_01626 AMC99_01632 SM00422 helix_turn_helix, mercury resistance AMC99_01633 SM00411 bacterial (prokaryotic) histone like domain AMC99_01637 SM00849 Metallo-beta-lactamase superfamily AMC99_01644 SM00840 AMC99_01644 AMC99_01648 SM00327 von Willebrand factor (vWF) type A domain AMC99_01651 SM00487 DEAD-like helicases superfamily AMC99_01651 SM00490 helicase superfamily c-terminal domain AMC99_01657 SM00342 helix_turn_helix, arabinose operon control protein AMC99_01664 SM00382 ATPases associated with a variety of cellular activities AMC99_01674 SM00822 AMC99_01674 AMC99_01676 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMC99_01677 SM00861 Transketolase, pyrimidine binding domain AMC99_01683 SM00316 Ribosomal protein S1-like RNA-binding domain AMC99_01683 SM00322 K homology RNA-binding domain AMC99_01688 SM00382 ATPases associated with a variety of cellular activities AMC99_01707 SM00829 Enoylreductase AMC99_01725 SM01211 AMC99_01725 AMC99_01726 SM00052 Putative diguanylate phosphodiesterase AMC99_01726 SM00267 diguanylate cyclase AMC99_01742 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMC99_01745 SM00710 Parallel beta-helix repeats AMC99_01749 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMC99_01749 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMC99_01751 SM00382 ATPases associated with a variety of cellular activities AMC99_01751 SM00448 cheY-homologous receiver domain AMC99_01752 SM00822 AMC99_01752 AMC99_01766 SM00434 DNA Topoisomerase IV AMC99_01777 SM00448 cheY-homologous receiver domain AMC99_01777 SM00862 Transcriptional regulatory protein, C terminal AMC99_01778 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMC99_01778 SM00387 Histidine kinase-like ATPases AMC99_01778 SM00388 His Kinase A (phosphoacceptor) domain AMC99_01783 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMC99_01788 SM00493 AMC99_01788 AMC99_01792 SM00829 Enoylreductase AMC99_01793 SM00870 AMC99_01793 AMC99_01803 SM00788 Adenylosuccinate synthetase AMC99_01817 SM00382 ATPases associated with a variety of cellular activities AMC99_01838 SM00450 Rhodanese Homology Domain AMC99_01848 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMC99_01858 SM00864 Tubulin/FtsZ family, GTPase domain AMC99_01858 SM00865 Tubulin/FtsZ family, C-terminal domain AMC99_01859 SM00842 Cell division protein FtsA AMC99_01879 SM00478 endonuclease III AMC99_01884 SM00382 ATPases associated with a variety of cellular activities AMC99_01890 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMC99_01892 SM00938 Nitrogen regulatory protein P-II AMC99_01893 SM01230 AMC99_01893 AMC99_01900 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AMC99_01915 SM00836 DALR anticodon binding domain AMC99_01915 SM01016 Arginyl tRNA synthetase N terminal dom AMC99_01924 SM00858 AMC99_01924 AMC99_01930 SM00347 helix_turn_helix multiple antibiotic resistance protein AMC99_01934 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMC99_01939 SM00028 Tetratricopeptide repeats AMC99_01940 SM00382 ATPases associated with a variety of cellular activities AMC99_01940 SM01086 C-terminal, D2-small domain, of ClpB protein AMC99_01942 SM00382 ATPases associated with a variety of cellular activities AMC99_01945 SM00342 helix_turn_helix, arabinose operon control protein AMC99_01952 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMC99_01956 SM00845 GatB domain AMC99_01971 SM00382 ATPases associated with a variety of cellular activities AMC99_01986 SM00984 UDP binding domain AMC99_01987 SM00020 Trypsin-like serine protease AMC99_01987 SM00869 Autotransporter beta-domain AMC99_01988 SM00644 AMC99_01988 AMC99_01991 SM00363 S4 RNA-binding domain AMC99_02000 SM00382 ATPases associated with a variety of cellular activities AMC99_02000 SM01086 C-terminal, D2-small domain, of ClpB protein AMC99_02011 SM00671 Sel1-like repeats. AMC99_02015 SM00028 Tetratricopeptide repeats AMC99_02030 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_02033 SM00460 Transglutaminase/protease-like homologues AMC99_02043 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMC99_02048 SM00849 Metallo-beta-lactamase superfamily AMC99_02065 SM01007 Class II Aldolase and Adducin N-terminal domain AMC99_02067 SM00073 Histidine Phosphotransfer domain AMC99_02067 SM00260 Two component signalling adaptor domain AMC99_02067 SM00387 Histidine kinase-like ATPases AMC99_02067 SM01231 AMC99_02067 AMC99_02068 SM00260 Two component signalling adaptor domain AMC99_02069 SM00448 cheY-homologous receiver domain AMC99_02070 SM00448 cheY-homologous receiver domain AMC99_02071 SM00138 Methyltransferase, chemotaxis proteins AMC99_02072 SM00052 Putative diguanylate phosphodiesterase AMC99_02072 SM00267 diguanylate cyclase AMC99_02073 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMC99_02080 SM00829 Enoylreductase AMC99_02082 SM00849 Metallo-beta-lactamase superfamily AMC99_02089 SM00822 AMC99_02089 AMC99_02093 SM00862 Transcriptional regulatory protein, C terminal AMC99_02094 SM00829 Enoylreductase AMC99_02099 SM00448 cheY-homologous receiver domain AMC99_02101 SM00567 E-Z type HEAT repeats AMC99_02104 SM00448 cheY-homologous receiver domain AMC99_02105 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMC99_02105 SM00091 PAS domain AMC99_02105 SM00387 Histidine kinase-like ATPases AMC99_02105 SM00388 His Kinase A (phosphoacceptor) domain AMC99_02110 SM00052 Putative diguanylate phosphodiesterase AMC99_02110 SM00267 diguanylate cyclase AMC99_02110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMC99_02113 SM00671 Sel1-like repeats. AMC99_02124 SM00382 ATPases associated with a variety of cellular activities AMC99_02128 SM00382 ATPases associated with a variety of cellular activities AMC99_02128 SM01086 C-terminal, D2-small domain, of ClpB protein AMC99_02135 SM00899 AMC99_02135 AMC99_02137 SM00248 ankyrin repeats AMC99_02154 SM00347 helix_turn_helix multiple antibiotic resistance protein AMC99_02165 SM00530 Helix-turn-helix XRE-family like proteins AMC99_02181 SM00852 Probable molybdopterin binding domain AMC99_02185 SM00649 Ribosomal protein L11/L12 AMC99_02194 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AMC99_02194 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMC99_02210 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMC99_02210 SM00448 cheY-homologous receiver domain AMC99_02210 SM00911 HWE histidine kinase AMC99_02213 SM00091 PAS domain AMC99_02213 SM00387 Histidine kinase-like ATPases AMC99_02213 SM00388 His Kinase A (phosphoacceptor) domain AMC99_02213 SM00448 cheY-homologous receiver domain AMC99_02222 SM00138 Methyltransferase, chemotaxis proteins AMC99_02222 SM00911 HWE histidine kinase AMC99_02236 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMC99_02238 SM00244 prohibitin homologues AMC99_02239 SM00244 prohibitin homologues AMC99_02240 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMC99_02251 SM00563 Phosphate acyltransferases AMC99_02254 SM00382 ATPases associated with a variety of cellular activities AMC99_02260 SM00344 helix_turn_helix ASNC type AMC99_02263 SM00829 Enoylreductase AMC99_02272 SM00464 Found in ATP-dependent protease La (LON) AMC99_02294 SM00382 ATPases associated with a variety of cellular activities AMC99_02300 SM00478 endonuclease III AMC99_02300 SM00525 AMC99_02300 AMC99_02301 SM00478 endonuclease III AMC99_02309 SM00387 Histidine kinase-like ATPases AMC99_02309 SM00433 TopoisomeraseII AMC99_02314 SM00563 Phosphate acyltransferases AMC99_02319 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMC99_02319 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMC99_02319 SM00091 PAS domain AMC99_02319 SM00911 HWE histidine kinase AMC99_02321 SM00382 ATPases associated with a variety of cellular activities AMC99_02326 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMC99_02333 SM00843 AMC99_02333 AMC99_02334 SM00267 diguanylate cyclase AMC99_02340 SM00448 cheY-homologous receiver domain AMC99_02340 SM00862 Transcriptional regulatory protein, C terminal AMC99_02341 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMC99_02341 SM00387 Histidine kinase-like ATPases AMC99_02341 SM00388 His Kinase A (phosphoacceptor) domain AMC99_02342 SM00382 ATPases associated with a variety of cellular activities AMC99_02348 SM00098 Alkaline phosphatase homologues AMC99_02354 SM00244 prohibitin homologues AMC99_02368 SM00382 ATPases associated with a variety of cellular activities AMC99_02383 SM00986 Uracil DNA glycosylase superfamily AMC99_02383 SM00987 UreE urease accessory protein, C-terminal domain AMC99_02384 SM00474 3'-5' exonuclease AMC99_02393 SM00822 AMC99_02393 AMC99_02408 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMC99_02412 SM00530 Helix-turn-helix XRE-family like proteins AMC99_02423 SM00382 ATPases associated with a variety of cellular activities AMC99_02432 SM00411 bacterial (prokaryotic) histone like domain AMC99_02433 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMC99_02440 SM00861 Transketolase, pyrimidine binding domain AMC99_02444 SM00798 AICARFT/IMPCHase bienzyme AMC99_02444 SM00851 MGS-like domain AMC99_02454 SM00354 helix_turn _helix lactose operon repressor AMC99_02456 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMC99_02468 SM00028 Tetratricopeptide repeats AMC99_02473 SM00448 cheY-homologous receiver domain AMC99_02473 SM00850 LytTr DNA-binding domain AMC99_02482 SM01209 AMC99_02482 AMC99_02482 SM01210 AMC99_02482 AMC99_02501 SM00342 helix_turn_helix, arabinose operon control protein AMC99_02521 SM00448 cheY-homologous receiver domain AMC99_02521 SM00850 LytTr DNA-binding domain AMC99_02522 SM00387 Histidine kinase-like ATPases AMC99_02528 SM00116 Domain in cystathionine beta-synthase and other proteins. AMC99_02537 SM00479 AMC99_02537 AMC99_02544 SM00357 Cold shock protein domain AMC99_02544 SM00382 ATPases associated with a variety of cellular activities AMC99_02544 SM00959 Rho termination factor, N-terminal domain AMC99_02551 SM01228 AMC99_02551 AMC99_02554 SM00470 ParB-like nuclease domain AMC99_02559 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMC99_02565 SM01058 CarD-like/TRCF domain AMC99_02567 SM00363 S4 RNA-binding domain AMC99_02568 SM00490 helicase superfamily c-terminal domain AMC99_02570 SM01004 Delta-aminolevulinic acid dehydratase AMC99_02574 SM01152 AMC99_02574 AMC99_02579 SM00382 ATPases associated with a variety of cellular activities AMC99_02579 SM01086 C-terminal, D2-small domain, of ClpB protein AMC99_02581 SM00829 Enoylreductase AMC99_02592 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMC99_02592 SM00245 tail specific protease AMC99_02613 SM00984 UDP binding domain AMC99_02621 SM00271 DnaJ molecular chaperone homology domain AMC99_02636 SM00893 Electron transfer flavoprotein domain AMC99_02637 SM00893 Electron transfer flavoprotein domain AMC99_02643 SM01091 Transporter associated domain AMC99_02647 SM00904 Riboflavin kinase AMC99_02651 SM01001 AIR carboxylase AMC99_02652 SM00855 Phosphoglycerate mutase family AMC99_02671 SM00421 helix_turn_helix, Lux Regulon AMC99_02674 SM00271 DnaJ molecular chaperone homology domain AMC99_02677 SM00487 DEAD-like helicases superfamily AMC99_02677 SM00490 helicase superfamily c-terminal domain AMC99_02689 SM01400 AMC99_02689 AMC99_02690 SM00342 helix_turn_helix, arabinose operon control protein AMC99_02692 SM00822 AMC99_02692 AMC99_02695 SM00342 helix_turn_helix, arabinose operon control protein AMC99_02697 SM00342 helix_turn_helix, arabinose operon control protein AMC99_02699 SM00873 B3/4 domain AMC99_02699 SM00874 tRNA synthetase B5 domain AMC99_02699 SM00896 Ferredoxin-fold anticodon binding domain AMC99_02706 SM00938 Nitrogen regulatory protein P-II AMC99_02716 SM00357 Cold shock protein domain AMC99_02731 SM00100 Cyclic nucleotide-monophosphate binding domain AMC99_02731 SM00419 helix_turn_helix, cAMP Regulatory protein AMC99_02737 SM00448 cheY-homologous receiver domain AMC99_02743 SM00671 Sel1-like repeats. AMC99_02751 SM00507 HNH nucleases AMC99_02759 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AMC99_02759 SM00534 ATPase domain of DNA mismatch repair MUTS family AMC99_02760 SM00919 Malic enzyme, NAD binding domain AMC99_02760 SM01274 AMC99_02760 AMC99_02766 SM00448 cheY-homologous receiver domain AMC99_02766 SM00862 Transcriptional regulatory protein, C terminal AMC99_02769 SM00382 ATPases associated with a variety of cellular activities AMC99_02775 SM00937 AMC99_02775 AMC99_02782 SM00882 Coenzyme A transferase AMC99_02784 SM00882 Coenzyme A transferase AMC99_02785 SM00382 ATPases associated with a variety of cellular activities AMC99_02785 SM01072 Cell division protein 48 (CDC48) domain 2 AMC99_02785 SM01073 Cell division protein 48 (CDC48) N-terminal domain AMC99_02787 SM00911 HWE histidine kinase AMC99_02788 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMC99_02788 SM00474 3'-5' exonuclease AMC99_02788 SM00475 5'-3' exonuclease AMC99_02788 SM00482 DNA polymerase A domain AMC99_02794 SM00883 Chaperonin 10 Kd subunit AMC99_02802 SM00530 Helix-turn-helix XRE-family like proteins AMC99_02807 SM00663 RNA polymerase I subunit A N-terminus