AVL56_00005 SM00382 ATPases associated with a variety of cellular activities AVL56_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AVL56_00010 SM00480 DNA polymerase III beta subunit AVL56_00020 SM00387 Histidine kinase-like ATPases AVL56_00020 SM00433 TopoisomeraseII AVL56_00035 SM00836 DALR anticodon binding domain AVL56_00070 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AVL56_00070 SM00474 3'-5' exonuclease AVL56_00070 SM00475 5'-3' exonuclease AVL56_00070 SM00482 DNA polymerase A domain AVL56_00105 SM00257 Lysin motif AVL56_00190 SM00481 DNA polymerase alpha chain like domain AVL56_00290 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AVL56_00290 SM01232 AVL56_00290 AVL56_00320 SM00052 Putative diguanylate phosphodiesterase AVL56_00320 SM00267 diguanylate cyclase AVL56_00330 SM00829 Enoylreductase AVL56_00335 SM00450 Rhodanese Homology Domain AVL56_00370 SM00052 Putative diguanylate phosphodiesterase AVL56_00370 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL56_00370 SM00267 diguanylate cyclase AVL56_00420 SM00974 AVL56_00420 AVL56_00485 SM00989 AVL56_00485 AVL56_00495 SM00342 helix_turn_helix, arabinose operon control protein AVL56_00570 SM00346 helix_turn_helix isocitrate lyase regulation AVL56_00580 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AVL56_00600 SM00028 Tetratricopeptide repeats AVL56_00605 SM00387 Histidine kinase-like ATPases AVL56_00605 SM00388 His Kinase A (phosphoacceptor) domain AVL56_00605 SM00448 cheY-homologous receiver domain AVL56_00635 SM00382 ATPases associated with a variety of cellular activities AVL56_00660 SM00849 Metallo-beta-lactamase superfamily AVL56_00690 SM00876 Biotin and Thiamin Synthesis associated domain AVL56_00755 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL56_00815 SM00267 diguanylate cyclase AVL56_00825 SM00072 Guanylate kinase homologues. AVL56_00830 SM01409 AVL56_00830 AVL56_00835 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL56_00835 SM00954 Region found in RelA / SpoT proteins AVL56_00850 SM00487 DEAD-like helicases superfamily AVL56_00850 SM00490 helicase superfamily c-terminal domain AVL56_00885 SM00382 ATPases associated with a variety of cellular activities AVL56_00890 SM00052 Putative diguanylate phosphodiesterase AVL56_00890 SM00267 diguanylate cyclase AVL56_00930 SM00028 Tetratricopeptide repeats AVL56_00930 SM00267 diguanylate cyclase AVL56_00960 SM00271 DnaJ molecular chaperone homology domain AVL56_00995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_01015 SM00052 Putative diguanylate phosphodiesterase AVL56_01015 SM00267 diguanylate cyclase AVL56_01035 SM00341 Helicase and RNase D C-terminal AVL56_01035 SM00487 DEAD-like helicases superfamily AVL56_01035 SM00490 helicase superfamily c-terminal domain AVL56_01035 SM00956 AVL56_01035 AVL56_01045 SM00924 MgtE intracellular N domain AVL56_01055 SM00267 diguanylate cyclase AVL56_01055 SM00448 cheY-homologous receiver domain AVL56_01065 SM00971 Serine acetyltransferase, N-terminal AVL56_01105 SM00014 Acid phosphatase homologues AVL56_01145 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AVL56_01180 SM00354 helix_turn _helix lactose operon repressor AVL56_01220 SM00448 cheY-homologous receiver domain AVL56_01225 SM00073 Histidine Phosphotransfer domain AVL56_01225 SM00387 Histidine kinase-like ATPases AVL56_01225 SM00388 His Kinase A (phosphoacceptor) domain AVL56_01225 SM00448 cheY-homologous receiver domain AVL56_01235 SM01130 AVL56_01235 AVL56_01285 SM00420 helix_turn_helix, Deoxyribose operon repressor AVL56_01285 SM01134 AVL56_01285 AVL56_01320 SM00965 Secretin and TonB N terminus short domain AVL56_01400 SM00316 Ribosomal protein S1-like RNA-binding domain AVL56_01420 SM00634 Bacterial Ig-like domain (group 1) AVL56_01435 SM00342 helix_turn_helix, arabinose operon control protein AVL56_01440 SM01038 Beta galactosidase small chain AVL56_01445 SM00448 cheY-homologous receiver domain AVL56_01445 SM00862 Transcriptional regulatory protein, C terminal AVL56_01450 SM00387 Histidine kinase-like ATPases AVL56_01475 SM00478 endonuclease III AVL56_01475 SM00525 AVL56_01475 AVL56_01510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_01510 SM00387 Histidine kinase-like ATPases AVL56_01510 SM00388 His Kinase A (phosphoacceptor) domain AVL56_01515 SM00448 cheY-homologous receiver domain AVL56_01515 SM00862 Transcriptional regulatory protein, C terminal AVL56_01525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_01530 SM00448 cheY-homologous receiver domain AVL56_01535 SM00073 Histidine Phosphotransfer domain AVL56_01535 SM00260 Two component signalling adaptor domain AVL56_01535 SM00387 Histidine kinase-like ATPases AVL56_01535 SM01231 AVL56_01535 AVL56_01540 SM00260 Two component signalling adaptor domain AVL56_01545 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL56_01545 SM00091 PAS domain AVL56_01545 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_01550 SM00138 Methyltransferase, chemotaxis proteins AVL56_01560 SM00448 cheY-homologous receiver domain AVL56_01590 SM00342 helix_turn_helix, arabinose operon control protein AVL56_01590 SM00387 Histidine kinase-like ATPases AVL56_01590 SM00388 His Kinase A (phosphoacceptor) domain AVL56_01590 SM00448 cheY-homologous receiver domain AVL56_01610 SM00354 helix_turn _helix lactose operon repressor AVL56_01685 SM00855 Phosphoglycerate mutase family AVL56_01695 SM00671 Sel1-like repeats. AVL56_01700 SM00382 ATPases associated with a variety of cellular activities AVL56_01705 SM01403 AVL56_01705 AVL56_01725 SM01382 AVL56_01725 AVL56_01725 SM01383 AVL56_01725 AVL56_01740 SM00322 K homology RNA-binding domain AVL56_01790 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_01790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_01815 SM00487 DEAD-like helicases superfamily AVL56_01815 SM00490 helicase superfamily c-terminal domain AVL56_01845 SM00342 helix_turn_helix, arabinose operon control protein AVL56_01860 SM00938 Nitrogen regulatory protein P-II AVL56_01880 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AVL56_01915 SM00073 Histidine Phosphotransfer domain AVL56_01915 SM00387 Histidine kinase-like ATPases AVL56_01915 SM00388 His Kinase A (phosphoacceptor) domain AVL56_01915 SM00448 cheY-homologous receiver domain AVL56_01920 SM00434 DNA Topoisomerase IV AVL56_01930 SM00052 Putative diguanylate phosphodiesterase AVL56_01930 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL56_01930 SM00267 diguanylate cyclase AVL56_01935 SM01150 AVL56_01935 AVL56_02010 SM00965 Secretin and TonB N terminus short domain AVL56_02030 SM00842 Cell division protein FtsA AVL56_02040 SM00919 Malic enzyme, NAD binding domain AVL56_02040 SM01274 AVL56_02040 AVL56_02070 SM00028 Tetratricopeptide repeats AVL56_02080 SM00052 Putative diguanylate phosphodiesterase AVL56_02110 SM00859 Semialdehyde dehydrogenase, NAD binding domain AVL56_02115 SM00851 MGS-like domain AVL56_02140 SM00448 cheY-homologous receiver domain AVL56_02140 SM00862 Transcriptional regulatory protein, C terminal AVL56_02145 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_02145 SM00387 Histidine kinase-like ATPases AVL56_02145 SM00388 His Kinase A (phosphoacceptor) domain AVL56_02175 SM00450 Rhodanese Homology Domain AVL56_02220 SM00479 AVL56_02220 AVL56_02240 SM00028 Tetratricopeptide repeats AVL56_02295 SM00267 diguanylate cyclase AVL56_02300 SM01004 Delta-aminolevulinic acid dehydratase AVL56_02310 SM00487 DEAD-like helicases superfamily AVL56_02310 SM00490 helicase superfamily c-terminal domain AVL56_02320 SM00357 Cold shock protein domain AVL56_02320 SM00382 ATPases associated with a variety of cellular activities AVL56_02320 SM00959 Rho termination factor, N-terminal domain AVL56_02330 SM00387 Histidine kinase-like ATPases AVL56_02330 SM00388 His Kinase A (phosphoacceptor) domain AVL56_02330 SM00448 cheY-homologous receiver domain AVL56_02340 SM01001 AIR carboxylase AVL56_02390 SM00788 Adenylosuccinate synthetase AVL56_02445 SM01005 Alanine racemase, C-terminal domain AVL56_02470 SM00062 Bacterial periplasmic substrate-binding proteins AVL56_02475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_02475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_02500 SM00360 RNA recognition motif AVL56_02510 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AVL56_02770 SM00257 Lysin motif AVL56_02815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_02815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_02815 SM01049 AVL56_02815 AVL56_02840 SM00448 cheY-homologous receiver domain AVL56_02840 SM00862 Transcriptional regulatory protein, C terminal AVL56_02845 SM00388 His Kinase A (phosphoacceptor) domain AVL56_02850 SM00287 Bacterial SH3 domain homologues AVL56_02855 SM01118 AVL56_02855 AVL56_02865 SM00927 DNA mismatch repair enzyme MutH AVL56_02875 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL56_02895 SM00448 cheY-homologous receiver domain AVL56_02900 SM00267 diguanylate cyclase AVL56_02905 SM00387 Histidine kinase-like ATPases AVL56_02905 SM00388 His Kinase A (phosphoacceptor) domain AVL56_02905 SM00448 cheY-homologous receiver domain AVL56_02930 SM00487 DEAD-like helicases superfamily AVL56_02930 SM00490 helicase superfamily c-terminal domain AVL56_02935 SM00670 Large family of predicted nucleotide-binding domains AVL56_02950 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL56_02950 SM00895 AVL56_02950 AVL56_02970 SM00829 Enoylreductase AVL56_02975 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AVL56_02995 SM00342 helix_turn_helix, arabinose operon control protein AVL56_03035 SM00346 helix_turn_helix isocitrate lyase regulation AVL56_03040 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL56_03040 SM00895 AVL56_03040 AVL56_03060 SM00028 Tetratricopeptide repeats AVL56_03130 SM00635 Bacterial Ig-like domain 2 AVL56_03155 SM00487 DEAD-like helicases superfamily AVL56_03155 SM00490 helicase superfamily c-terminal domain AVL56_03160 SM00028 Tetratricopeptide repeats AVL56_03195 SM00387 Histidine kinase-like ATPases AVL56_03195 SM00433 TopoisomeraseII AVL56_03200 SM00052 Putative diguanylate phosphodiesterase AVL56_03200 SM00091 PAS domain AVL56_03200 SM00138 Methyltransferase, chemotaxis proteins AVL56_03200 SM00267 diguanylate cyclase AVL56_03205 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL56_03235 SM00841 Elongation factor P, C-terminal AVL56_03235 SM01185 AVL56_03235 AVL56_03280 SM00014 Acid phosphatase homologues AVL56_03290 SM01012 AVL56_03290 AVL56_03315 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AVL56_03330 SM00091 PAS domain AVL56_03330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_03345 SM00382 ATPases associated with a variety of cellular activities AVL56_03415 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AVL56_03420 SM01007 Class II Aldolase and Adducin N-terminal domain AVL56_03450 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_03450 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_03460 SM00400 zinc finger AVL56_03460 SM00493 AVL56_03460 AVL56_03460 SM00766 DNA primase DnaG DnaB-binding AVL56_03485 SM01207 AVL56_03485 AVL56_03490 SM00905 Dihydroneopterin aldolase AVL56_03525 SM00530 Helix-turn-helix XRE-family like proteins AVL56_03535 SM00387 Histidine kinase-like ATPases AVL56_03540 SM00448 cheY-homologous receiver domain AVL56_03540 SM00862 Transcriptional regulatory protein, C terminal AVL56_03545 SM00387 Histidine kinase-like ATPases AVL56_03545 SM00388 His Kinase A (phosphoacceptor) domain AVL56_03555 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AVL56_03560 SM00710 Parallel beta-helix repeats AVL56_03595 SM00028 Tetratricopeptide repeats AVL56_03605 SM00448 cheY-homologous receiver domain AVL56_03605 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL56_03610 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL56_03610 SM00091 PAS domain AVL56_03610 SM00387 Histidine kinase-like ATPases AVL56_03610 SM00388 His Kinase A (phosphoacceptor) domain AVL56_03610 SM00448 cheY-homologous receiver domain AVL56_03655 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_03655 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_03670 SM00650 Ribosomal RNA adenine dimethylases AVL56_03690 SM00271 DnaJ molecular chaperone homology domain AVL56_03735 SM00954 Region found in RelA / SpoT proteins AVL56_03775 SM00965 Secretin and TonB N terminus short domain AVL56_03780 SM00631 AVL56_03780 AVL56_03820 SM00342 helix_turn_helix, arabinose operon control protein AVL56_03830 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL56_03830 SM00924 MgtE intracellular N domain AVL56_03860 SM00382 ATPases associated with a variety of cellular activities AVL56_03890 SM00382 ATPases associated with a variety of cellular activities AVL56_03925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL56_03930 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL56_03955 SM00342 helix_turn_helix, arabinose operon control protein AVL56_03985 SM00052 Putative diguanylate phosphodiesterase AVL56_03985 SM00267 diguanylate cyclase AVL56_03990 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL56_03990 SM00387 Histidine kinase-like ATPases AVL56_03990 SM00388 His Kinase A (phosphoacceptor) domain AVL56_03990 SM00448 cheY-homologous receiver domain AVL56_04000 SM00342 helix_turn_helix, arabinose operon control protein AVL56_04020 SM01118 AVL56_04020 AVL56_04030 SM00861 Transketolase, pyrimidine binding domain AVL56_04035 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL56_04080 SM00382 ATPases associated with a variety of cellular activities AVL56_04130 SM00267 diguanylate cyclase AVL56_04150 SM00342 helix_turn_helix, arabinose operon control protein AVL56_04170 SM00342 helix_turn_helix, arabinose operon control protein AVL56_04185 SM00758 AVL56_04185 AVL56_04185 SM01217 AVL56_04185 AVL56_04190 SM00347 helix_turn_helix multiple antibiotic resistance protein AVL56_04200 SM01263 AVL56_04200 AVL56_04215 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL56_04215 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_04230 SM00267 diguanylate cyclase AVL56_04255 SM00382 ATPases associated with a variety of cellular activities AVL56_04405 SM00482 DNA polymerase A domain AVL56_04460 SM00448 cheY-homologous receiver domain AVL56_04465 SM00091 PAS domain AVL56_04485 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL56_04495 SM00487 DEAD-like helicases superfamily AVL56_04495 SM00490 helicase superfamily c-terminal domain AVL56_04505 SM00382 ATPases associated with a variety of cellular activities AVL56_04530 SM01329 AVL56_04530 AVL56_04535 SM00917 LeuA allosteric (dimerisation) domain AVL56_04555 SM01192 AVL56_04555 AVL56_04555 SM01193 AVL56_04555 AVL56_04565 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AVL56_04565 SM00534 ATPase domain of DNA mismatch repair MUTS family AVL56_04575 SM00382 ATPases associated with a variety of cellular activities AVL56_04580 SM00382 ATPases associated with a variety of cellular activities AVL56_04605 SM00382 ATPases associated with a variety of cellular activities AVL56_04675 SM00382 ATPases associated with a variety of cellular activities AVL56_04715 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AVL56_04720 SM01329 AVL56_04720 AVL56_04740 SM00267 diguanylate cyclase AVL56_04830 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL56_04875 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL56_04885 SM00935 Outer membrane protein (OmpH-like) AVL56_04910 SM00481 DNA polymerase alpha chain like domain AVL56_04920 SM00977 TilS substrate C-terminal domain AVL56_04925 SM00267 diguanylate cyclase AVL56_04945 SM00062 Bacterial periplasmic substrate-binding proteins AVL56_04950 SM01211 AVL56_04950 AVL56_04955 SM00463 Small MutS-related domain AVL56_04960 SM00062 Bacterial periplasmic substrate-binding proteins AVL56_04960 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AVL56_04985 SM00487 DEAD-like helicases superfamily AVL56_04985 SM00490 helicase superfamily c-terminal domain AVL56_04990 SM00882 Coenzyme A transferase AVL56_04995 SM00882 Coenzyme A transferase AVL56_05010 SM00387 Histidine kinase-like ATPases AVL56_05055 SM00861 Transketolase, pyrimidine binding domain AVL56_05070 SM00220 Serine/Threonine protein kinases, catalytic domain AVL56_05095 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL56_05105 SM00945 ProQ/FINO family AVL56_05110 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL56_05110 SM00245 tail specific protease AVL56_05165 SM00981 AVL56_05165 AVL56_05175 SM00382 ATPases associated with a variety of cellular activities AVL56_05315 SM00100 Cyclic nucleotide-monophosphate binding domain AVL56_05315 SM00419 helix_turn_helix, cAMP Regulatory protein AVL56_05340 SM00047 Lysozyme subfamily 2 AVL56_05405 SM00450 Rhodanese Homology Domain AVL56_05415 SM01144 AVL56_05415 AVL56_05460 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AVL56_05460 SM00465 GIY-YIG type nucleases (URI domain) AVL56_05465 SM00421 helix_turn_helix, Lux Regulon AVL56_05465 SM00448 cheY-homologous receiver domain AVL56_05510 SM00388 His Kinase A (phosphoacceptor) domain AVL56_05515 SM00448 cheY-homologous receiver domain AVL56_05515 SM00862 Transcriptional regulatory protein, C terminal AVL56_05580 SM00382 ATPases associated with a variety of cellular activities AVL56_05590 SM00843 AVL56_05590 AVL56_05595 SM00344 helix_turn_helix ASNC type AVL56_05600 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AVL56_05600 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AVL56_05605 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AVL56_05610 SM00028 Tetratricopeptide repeats AVL56_05625 SM00411 bacterial (prokaryotic) histone like domain AVL56_05630 SM00316 Ribosomal protein S1-like RNA-binding domain AVL56_05650 SM00434 DNA Topoisomerase IV AVL56_05675 SM00387 Histidine kinase-like ATPases AVL56_05675 SM00388 His Kinase A (phosphoacceptor) domain AVL56_05680 SM00448 cheY-homologous receiver domain AVL56_05680 SM00862 Transcriptional regulatory protein, C terminal AVL56_05705 SM00422 helix_turn_helix, mercury resistance AVL56_05730 SM01321 AVL56_05730 AVL56_05815 SM00382 ATPases associated with a variety of cellular activities AVL56_05855 SM01130 AVL56_05855 AVL56_05940 SM00421 helix_turn_helix, Lux Regulon AVL56_05940 SM00448 cheY-homologous receiver domain AVL56_05970 SM00642 Alpha-amylase domain AVL56_05975 SM00852 Probable molybdopterin binding domain AVL56_05995 SM00382 ATPases associated with a variety of cellular activities AVL56_06040 SM00563 Phosphate acyltransferases AVL56_06075 SM00342 helix_turn_helix, arabinose operon control protein AVL56_06105 SM00893 Electron transfer flavoprotein domain AVL56_06110 SM00893 Electron transfer flavoprotein domain AVL56_06120 SM00528 Domain in histone-like proteins of HNS family AVL56_06140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_06140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_06160 SM00354 helix_turn _helix lactose operon repressor AVL56_06170 SM00797 Allophanate hydrolase subunit 2 AVL56_06175 SM00796 Allophanate hydrolase subunit 1 AVL56_06225 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL56_06230 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL56_06310 SM00382 ATPases associated with a variety of cellular activities AVL56_06320 SM00316 Ribosomal protein S1-like RNA-binding domain AVL56_06320 SM00322 K homology RNA-binding domain AVL56_06325 SM00507 HNH nucleases AVL56_06365 SM00046 Diacylglycerol kinase catalytic domain (presumed) AVL56_06365 SM00195 Dual specificity phosphatase, catalytic domain AVL56_06375 SM00052 Putative diguanylate phosphodiesterase AVL56_06375 SM00267 diguanylate cyclase AVL56_06375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_06405 SM00382 ATPases associated with a variety of cellular activities AVL56_06415 SM01103 AVL56_06415 AVL56_06475 SM00936 Penicillin-binding protein 5, C-terminal domain AVL56_06490 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL56_06500 SM00870 AVL56_06500 AVL56_06530 SM00731 SprT homologues. AVL56_06560 SM00316 Ribosomal protein S1-like RNA-binding domain AVL56_06565 SM00382 ATPases associated with a variety of cellular activities AVL56_06565 SM01086 C-terminal, D2-small domain, of ClpB protein AVL56_06575 SM00357 Cold shock protein domain AVL56_06605 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AVL56_06610 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AVL56_06715 SM00710 Parallel beta-helix repeats AVL56_06745 SM00354 helix_turn _helix lactose operon repressor AVL56_06765 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL56_06830 SM00267 diguanylate cyclase AVL56_06870 SM00825 Beta-ketoacyl synthase AVL56_06880 SM00822 AVL56_06880 AVL56_06885 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AVL56_06920 SM00363 S4 RNA-binding domain AVL56_06925 SM00316 Ribosomal protein S1-like RNA-binding domain AVL56_06930 SM00587 ZnF_C4 abd HLH domain containing kinases domain AVL56_07000 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AVL56_07000 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AVL56_07000 SM00493 AVL56_07000 AVL56_07010 SM00634 Bacterial Ig-like domain (group 1) AVL56_07025 SM00382 ATPases associated with a variety of cellular activities AVL56_07030 SM00052 Putative diguanylate phosphodiesterase AVL56_07060 SM00479 AVL56_07060 AVL56_07070 SM00829 Enoylreductase AVL56_07075 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AVL56_07090 SM00382 ATPases associated with a variety of cellular activities AVL56_07090 SM00487 DEAD-like helicases superfamily AVL56_07090 SM00490 helicase superfamily c-terminal domain AVL56_07090 SM00847 Helicase associated domain (HA2) Add an annotation AVL56_07100 SM00342 helix_turn_helix, arabinose operon control protein AVL56_07125 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL56_07130 SM00387 Histidine kinase-like ATPases AVL56_07130 SM00388 His Kinase A (phosphoacceptor) domain AVL56_07130 SM00448 cheY-homologous receiver domain AVL56_07135 SM00479 AVL56_07135 AVL56_07145 SM00062 Bacterial periplasmic substrate-binding proteins AVL56_07145 SM00267 diguanylate cyclase AVL56_07155 SM00422 helix_turn_helix, mercury resistance AVL56_07175 SM00878 Biotin carboxylase C-terminal domain AVL56_07185 SM01321 AVL56_07185 AVL56_07190 SM00052 Putative diguanylate phosphodiesterase AVL56_07190 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL56_07190 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL56_07190 SM00091 PAS domain AVL56_07190 SM00267 diguanylate cyclase AVL56_07285 SM00487 DEAD-like helicases superfamily AVL56_07285 SM00490 helicase superfamily c-terminal domain AVL56_07285 SM00982 AVL56_07285 AVL56_07285 SM01058 CarD-like/TRCF domain AVL56_07325 SM00411 bacterial (prokaryotic) histone like domain AVL56_07330 SM00873 B3/4 domain AVL56_07330 SM00874 tRNA synthetase B5 domain AVL56_07330 SM00896 Ferredoxin-fold anticodon binding domain AVL56_07420 SM00052 Putative diguanylate phosphodiesterase AVL56_07420 SM00267 diguanylate cyclase AVL56_07490 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AVL56_07575 SM00387 Histidine kinase-like ATPases AVL56_07575 SM00388 His Kinase A (phosphoacceptor) domain AVL56_07575 SM00448 cheY-homologous receiver domain AVL56_07580 SM00267 diguanylate cyclase AVL56_07580 SM00448 cheY-homologous receiver domain AVL56_07585 SM00052 Putative diguanylate phosphodiesterase AVL56_07585 SM00091 PAS domain AVL56_07585 SM00267 diguanylate cyclase AVL56_07585 SM00448 cheY-homologous receiver domain AVL56_07620 SM01092 CO dehydrogenase flavoprotein C-terminal domain AVL56_07625 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL56_07655 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL56_07655 SM00091 PAS domain AVL56_07655 SM00267 diguanylate cyclase AVL56_07675 SM00028 Tetratricopeptide repeats AVL56_07675 SM00267 diguanylate cyclase AVL56_07750 SM00052 Putative diguanylate phosphodiesterase AVL56_07750 SM00267 diguanylate cyclase AVL56_07780 SM00460 Transglutaminase/protease-like homologues AVL56_07790 SM00331 Sigma factor PP2C-like phosphatases AVL56_07790 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AVL56_07795 SM01116 AVL56_07795 AVL56_07800 SM00838 Elongation factor G C-terminus AVL56_07800 SM00889 Elongation factor G, domain IV AVL56_07850 SM00937 AVL56_07850 AVL56_07875 SM01400 AVL56_07875 AVL56_07880 SM00052 Putative diguanylate phosphodiesterase AVL56_07880 SM00267 diguanylate cyclase AVL56_07890 SM00829 Enoylreductase AVL56_07940 SM00903 Flavin reductase like domain AVL56_07960 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL56_07975 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL56_07975 SM01091 Transporter associated domain AVL56_08015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_08025 SM00851 MGS-like domain AVL56_08025 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AVL56_08030 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AVL56_08050 SM00052 Putative diguanylate phosphodiesterase AVL56_08050 SM00091 PAS domain AVL56_08060 SM00271 DnaJ molecular chaperone homology domain AVL56_08075 SM00387 Histidine kinase-like ATPases AVL56_08075 SM00388 His Kinase A (phosphoacceptor) domain AVL56_08075 SM00448 cheY-homologous receiver domain AVL56_08080 SM00421 helix_turn_helix, Lux Regulon AVL56_08080 SM00448 cheY-homologous receiver domain AVL56_08145 SM01266 AVL56_08145 AVL56_08160 SM00363 S4 RNA-binding domain AVL56_08180 SM00481 DNA polymerase alpha chain like domain AVL56_08230 SM00448 cheY-homologous receiver domain AVL56_08230 SM00862 Transcriptional regulatory protein, C terminal AVL56_08235 SM00387 Histidine kinase-like ATPases AVL56_08245 SM00905 Dihydroneopterin aldolase AVL56_08260 SM00382 ATPases associated with a variety of cellular activities AVL56_08275 SM01321 AVL56_08275 AVL56_08325 SM00028 Tetratricopeptide repeats AVL56_08325 SM00448 cheY-homologous receiver domain AVL56_08335 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL56_08340 SM00382 ATPases associated with a variety of cellular activities AVL56_08360 SM00382 ATPases associated with a variety of cellular activities AVL56_08370 SM00226 Low molecular weight phosphatase family AVL56_08395 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL56_08395 SM00876 Biotin and Thiamin Synthesis associated domain AVL56_08460 SM00267 diguanylate cyclase AVL56_08500 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL56_08505 SM00829 Enoylreductase AVL56_08510 SM00829 Enoylreductase AVL56_08535 SM00859 Semialdehyde dehydrogenase, NAD binding domain AVL56_08565 SM00028 Tetratricopeptide repeats AVL56_08565 SM00387 Histidine kinase-like ATPases AVL56_08565 SM00388 His Kinase A (phosphoacceptor) domain AVL56_08565 SM00448 cheY-homologous receiver domain AVL56_08615 SM00267 diguanylate cyclase AVL56_08635 SM00419 helix_turn_helix, cAMP Regulatory protein AVL56_08640 SM01068 Putative carbohydrate binding domain AVL56_08650 SM00244 prohibitin homologues AVL56_08655 SM00244 prohibitin homologues AVL56_08660 SM00267 diguanylate cyclase AVL56_08670 SM00342 helix_turn_helix, arabinose operon control protein AVL56_08680 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL56_08680 SM00895 AVL56_08680 AVL56_08695 SM00849 Metallo-beta-lactamase superfamily AVL56_08720 SM01217 AVL56_08720 AVL56_08730 SM00354 helix_turn _helix lactose operon repressor AVL56_08745 SM00849 Metallo-beta-lactamase superfamily AVL56_08790 SM00347 helix_turn_helix multiple antibiotic resistance protein AVL56_08920 SM00028 Tetratricopeptide repeats AVL56_08955 SM00382 ATPases associated with a variety of cellular activities AVL56_08960 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AVL56_08985 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL56_08990 SM00382 ATPases associated with a variety of cellular activities AVL56_08990 SM00448 cheY-homologous receiver domain AVL56_09000 SM00387 Histidine kinase-like ATPases AVL56_09000 SM00388 His Kinase A (phosphoacceptor) domain AVL56_09010 SM00052 Putative diguanylate phosphodiesterase AVL56_09010 SM00267 diguanylate cyclase AVL56_09020 SM00331 Sigma factor PP2C-like phosphatases AVL56_09020 SM00448 cheY-homologous receiver domain AVL56_09035 SM00448 cheY-homologous receiver domain AVL56_09040 SM00830 Chorismate mutase type II AVL56_09045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_09045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_09050 SM00830 Chorismate mutase type II AVL56_09110 SM00382 ATPases associated with a variety of cellular activities AVL56_09155 SM00382 ATPases associated with a variety of cellular activities AVL56_09155 SM00962 SRP54-type protein, GTPase domain AVL56_09155 SM00963 SRP54-type protein, helical bundle domain AVL56_09165 SM01091 Transporter associated domain AVL56_09175 SM00855 Phosphoglycerate mutase family AVL56_09185 SM00052 Putative diguanylate phosphodiesterase AVL56_09185 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL56_09185 SM00091 PAS domain AVL56_09185 SM00267 diguanylate cyclase AVL56_09220 SM00327 von Willebrand factor (vWF) type A domain AVL56_09225 SM00028 Tetratricopeptide repeats AVL56_09250 SM00267 diguanylate cyclase AVL56_09340 SM00487 DEAD-like helicases superfamily AVL56_09340 SM00490 helicase superfamily c-terminal domain AVL56_09380 SM00900 AVL56_09380 AVL56_09390 SM00478 endonuclease III AVL56_09390 SM00525 AVL56_09390 AVL56_09395 SM00862 Transcriptional regulatory protein, C terminal AVL56_09425 SM00028 Tetratricopeptide repeats AVL56_09430 SM00267 diguanylate cyclase AVL56_09440 SM00357 Cold shock protein domain AVL56_09460 SM00479 AVL56_09460 AVL56_09475 SM00965 Secretin and TonB N terminus short domain AVL56_09505 SM00763 PrkA AAA domain AVL56_09540 SM00463 Small MutS-related domain AVL56_09545 SM00387 Histidine kinase-like ATPases AVL56_09550 SM00382 ATPases associated with a variety of cellular activities AVL56_09550 SM00448 cheY-homologous receiver domain AVL56_09565 SM00382 ATPases associated with a variety of cellular activities AVL56_09575 SM01321 AVL56_09575 AVL56_09615 SM00937 AVL56_09615 AVL56_09650 SM00052 Putative diguanylate phosphodiesterase AVL56_09650 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL56_09650 SM00091 PAS domain AVL56_09650 SM00267 diguanylate cyclase AVL56_09655 SM00836 DALR anticodon binding domain AVL56_09655 SM01016 Arginyl tRNA synthetase N terminal dom AVL56_09725 SM00028 Tetratricopeptide repeats AVL56_09755 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AVL56_09760 SM00028 Tetratricopeptide repeats AVL56_09775 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AVL56_09805 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AVL56_09810 SM00344 helix_turn_helix ASNC type AVL56_09825 SM00091 PAS domain AVL56_09825 SM00382 ATPases associated with a variety of cellular activities AVL56_09850 SM00382 ATPases associated with a variety of cellular activities AVL56_09870 SM00382 ATPases associated with a variety of cellular activities AVL56_09875 SM00382 ATPases associated with a variety of cellular activities AVL56_09955 SM00947 Carbonic anhydrase AVL56_09975 SM01018 B12 binding domain AVL56_09995 SM00260 Two component signalling adaptor domain AVL56_10000 SM00260 Two component signalling adaptor domain AVL56_10010 SM00448 cheY-homologous receiver domain AVL56_10015 SM00073 Histidine Phosphotransfer domain AVL56_10015 SM00260 Two component signalling adaptor domain AVL56_10015 SM00387 Histidine kinase-like ATPases AVL56_10015 SM01231 AVL56_10015 AVL56_10025 SM00448 cheY-homologous receiver domain AVL56_10040 SM00382 ATPases associated with a variety of cellular activities AVL56_10040 SM00962 SRP54-type protein, GTPase domain AVL56_10100 SM00382 ATPases associated with a variety of cellular activities AVL56_10125 SM00382 ATPases associated with a variety of cellular activities AVL56_10125 SM00448 cheY-homologous receiver domain AVL56_10130 SM00387 Histidine kinase-like ATPases AVL56_10130 SM00388 His Kinase A (phosphoacceptor) domain AVL56_10135 SM00382 ATPases associated with a variety of cellular activities AVL56_10165 SM00858 AVL56_10165 AVL56_10185 SM00822 AVL56_10185 AVL56_10300 SM00047 Lysozyme subfamily 2 AVL56_10345 SM00138 Methyltransferase, chemotaxis proteins AVL56_10350 SM00260 Two component signalling adaptor domain AVL56_10350 SM00448 cheY-homologous receiver domain AVL56_10355 SM00858 AVL56_10355 AVL56_10385 SM00052 Putative diguanylate phosphodiesterase AVL56_10390 SM00421 helix_turn_helix, Lux Regulon AVL56_10400 SM00382 ATPases associated with a variety of cellular activities AVL56_10435 SM00530 Helix-turn-helix XRE-family like proteins AVL56_10500 SM00363 S4 RNA-binding domain AVL56_10505 SM00054 EF-hand, calcium binding motif AVL56_10510 SM00450 Rhodanese Homology Domain AVL56_10520 SM00028 Tetratricopeptide repeats AVL56_10520 SM00448 cheY-homologous receiver domain AVL56_10535 SM00448 cheY-homologous receiver domain AVL56_10535 SM00850 LytTr DNA-binding domain AVL56_10555 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL56_10680 SM00354 helix_turn _helix lactose operon repressor AVL56_10685 SM00642 Alpha-amylase domain AVL56_10695 SM00642 Alpha-amylase domain AVL56_10700 SM00642 Alpha-amylase domain AVL56_10740 SM00881 CoA binding domain AVL56_10755 SM00861 Transketolase, pyrimidine binding domain AVL56_10830 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL56_10855 SM00382 ATPases associated with a variety of cellular activities AVL56_10870 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AVL56_10870 SM00292 breast cancer carboxy-terminal domain AVL56_10870 SM00532 Ligase N family AVL56_10875 SM00771 ZipA, C-terminal domain (FtsZ-binding) AVL56_10895 SM00028 Tetratricopeptide repeats AVL56_10950 SM00028 Tetratricopeptide repeats AVL56_10965 SM00347 helix_turn_helix multiple antibiotic resistance protein AVL56_11045 SM00458 Ricin-type beta-trefoil AVL56_11135 SM00052 Putative diguanylate phosphodiesterase AVL56_11135 SM00267 diguanylate cyclase AVL56_11135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_11150 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL56_11150 SM00267 diguanylate cyclase AVL56_11170 SM00382 ATPases associated with a variety of cellular activities AVL56_11210 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL56_11265 SM00028 Tetratricopeptide repeats AVL56_11265 SM00448 cheY-homologous receiver domain AVL56_11270 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AVL56_11290 SM00267 diguanylate cyclase AVL56_11305 SM01387 AVL56_11305 AVL56_11325 SM00316 Ribosomal protein S1-like RNA-binding domain AVL56_11335 SM00448 cheY-homologous receiver domain AVL56_11335 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL56_11340 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL56_11340 SM00091 PAS domain AVL56_11340 SM00387 Histidine kinase-like ATPases AVL56_11340 SM00388 His Kinase A (phosphoacceptor) domain AVL56_11340 SM00448 cheY-homologous receiver domain AVL56_11470 SM00829 Enoylreductase AVL56_11485 SM00855 Phosphoglycerate mutase family AVL56_11510 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL56_11515 SM00382 ATPases associated with a variety of cellular activities AVL56_11545 SM00852 Probable molybdopterin binding domain AVL56_11700 SM00387 Histidine kinase-like ATPases AVL56_11700 SM00388 His Kinase A (phosphoacceptor) domain AVL56_11700 SM00448 cheY-homologous receiver domain AVL56_11770 SM00052 Putative diguanylate phosphodiesterase AVL56_11770 SM00267 diguanylate cyclase AVL56_11775 SM00849 Metallo-beta-lactamase superfamily AVL56_11815 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AVL56_11820 SM00450 Rhodanese Homology Domain AVL56_11835 SM00382 ATPases associated with a variety of cellular activities AVL56_11835 SM00448 cheY-homologous receiver domain AVL56_11845 SM00387 Histidine kinase-like ATPases AVL56_11845 SM00388 His Kinase A (phosphoacceptor) domain AVL56_11850 SM00448 cheY-homologous receiver domain AVL56_11855 SM00387 Histidine kinase-like ATPases AVL56_11855 SM00388 His Kinase A (phosphoacceptor) domain AVL56_11855 SM00448 cheY-homologous receiver domain AVL56_11920 SM00631 AVL56_11920 AVL56_11925 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL56_11940 SM01350 AVL56_11940 AVL56_11945 SM00642 Alpha-amylase domain AVL56_11950 SM00642 Alpha-amylase domain AVL56_11960 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL56_12025 SM00749 bacterial OsmY and nodulation domain AVL56_12050 SM00387 Histidine kinase-like ATPases AVL56_12050 SM00388 His Kinase A (phosphoacceptor) domain AVL56_12055 SM00448 cheY-homologous receiver domain AVL56_12055 SM00862 Transcriptional regulatory protein, C terminal AVL56_12090 SM00822 AVL56_12090 AVL56_12115 SM00354 helix_turn _helix lactose operon repressor AVL56_12120 SM00858 AVL56_12120 AVL56_12155 SM00710 Parallel beta-helix repeats AVL56_12165 SM00387 Histidine kinase-like ATPases AVL56_12165 SM00388 His Kinase A (phosphoacceptor) domain AVL56_12165 SM00448 cheY-homologous receiver domain AVL56_12210 SM00354 helix_turn _helix lactose operon repressor AVL56_12215 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AVL56_12235 SM00052 Putative diguanylate phosphodiesterase AVL56_12235 SM00267 diguanylate cyclase AVL56_12280 SM00267 diguanylate cyclase AVL56_12290 SM00448 cheY-homologous receiver domain AVL56_12290 SM00862 Transcriptional regulatory protein, C terminal AVL56_12295 SM00387 Histidine kinase-like ATPases AVL56_12295 SM00388 His Kinase A (phosphoacceptor) domain AVL56_12355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_12355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_12365 SM01060 AVL56_12365 AVL56_12375 SM00244 prohibitin homologues AVL56_12390 SM00100 Cyclic nucleotide-monophosphate binding domain AVL56_12440 SM00849 Metallo-beta-lactamase superfamily AVL56_12445 SM00257 Lysin motif AVL56_12460 SM00840 AVL56_12460 AVL56_12480 SM00244 prohibitin homologues AVL56_12485 SM01321 AVL56_12485 AVL56_12500 SM00382 ATPases associated with a variety of cellular activities AVL56_12505 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL56_12510 SM01092 CO dehydrogenase flavoprotein C-terminal domain AVL56_12525 SM00829 Enoylreductase AVL56_12585 SM00859 Semialdehyde dehydrogenase, NAD binding domain AVL56_12595 SM01007 Class II Aldolase and Adducin N-terminal domain AVL56_12600 SM00100 Cyclic nucleotide-monophosphate binding domain AVL56_12600 SM00419 helix_turn_helix, cAMP Regulatory protein AVL56_12605 SM00825 Beta-ketoacyl synthase AVL56_12610 SM00267 diguanylate cyclase AVL56_12760 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL56_12800 SM00341 Helicase and RNase D C-terminal AVL56_12800 SM00474 3'-5' exonuclease AVL56_12830 SM00487 DEAD-like helicases superfamily AVL56_12830 SM00488 AVL56_12830 AVL56_12830 SM00491 AVL56_12830 AVL56_12835 SM00642 Alpha-amylase domain AVL56_12940 SM01236 AVL56_12940 AVL56_12985 SM00387 Histidine kinase-like ATPases AVL56_12985 SM00388 His Kinase A (phosphoacceptor) domain AVL56_12990 SM00448 cheY-homologous receiver domain AVL56_12990 SM00862 Transcriptional regulatory protein, C terminal AVL56_12995 SM00849 Metallo-beta-lactamase superfamily AVL56_13020 SM00387 Histidine kinase-like ATPases AVL56_13025 SM00493 AVL56_13025 AVL56_13050 SM00382 ATPases associated with a variety of cellular activities AVL56_13075 SM00862 Transcriptional regulatory protein, C terminal AVL56_13085 SM00091 PAS domain AVL56_13085 SM00267 diguanylate cyclase AVL56_13090 SM00054 EF-hand, calcium binding motif AVL56_13135 SM00028 Tetratricopeptide repeats AVL56_13140 SM00382 ATPases associated with a variety of cellular activities AVL56_13140 SM01086 C-terminal, D2-small domain, of ClpB protein AVL56_13150 SM00363 S4 RNA-binding domain AVL56_13220 SM00861 Transketolase, pyrimidine binding domain AVL56_13275 SM00382 ATPases associated with a variety of cellular activities AVL56_13285 SM00382 ATPases associated with a variety of cellular activities AVL56_13320 SM00358 Double-stranded RNA binding motif AVL56_13320 SM00535 Ribonuclease III family AVL56_13330 SM00838 Elongation factor G C-terminus AVL56_13385 SM00938 Nitrogen regulatory protein P-II AVL56_13470 SM00904 Riboflavin kinase AVL56_13520 SM00563 Phosphate acyltransferases AVL56_13535 SM00411 bacterial (prokaryotic) histone like domain AVL56_13540 SM00382 ATPases associated with a variety of cellular activities AVL56_13540 SM00464 Found in ATP-dependent protease La (LON) AVL56_13545 SM00382 ATPases associated with a variety of cellular activities AVL56_13545 SM00994 ClpX C4-type zinc finger AVL56_13545 SM01086 C-terminal, D2-small domain, of ClpB protein AVL56_13620 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_13635 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL56_13635 SM01240 AVL56_13635 AVL56_13650 SM00382 ATPases associated with a variety of cellular activities AVL56_13655 SM00564 beta-propeller repeat AVL56_13675 SM00530 Helix-turn-helix XRE-family like proteins AVL56_13680 SM00028 Tetratricopeptide repeats AVL56_13680 SM00257 Lysin motif AVL56_13690 SM00562 AVL56_13690 AVL56_13720 SM00382 ATPases associated with a variety of cellular activities AVL56_13760 SM00850 LytTr DNA-binding domain AVL56_13765 SM00052 Putative diguanylate phosphodiesterase AVL56_13765 SM00267 diguanylate cyclase AVL56_13765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_13790 SM01323 AVL56_13790 AVL56_13860 SM00098 Alkaline phosphatase homologues AVL56_13865 SM00260 Two component signalling adaptor domain AVL56_13865 SM00448 cheY-homologous receiver domain AVL56_13910 SM00028 Tetratricopeptide repeats AVL56_14035 SM00382 ATPases associated with a variety of cellular activities AVL56_14105 SM00052 Putative diguanylate phosphodiesterase AVL56_14105 SM00267 diguanylate cyclase AVL56_14120 SM00354 helix_turn _helix lactose operon repressor AVL56_14155 SM00460 Transglutaminase/protease-like homologues AVL56_14170 SM00967 RNA 2'-O ribose methyltransferase substrate binding AVL56_14195 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AVL56_14200 SM00342 helix_turn_helix, arabinose operon control protein AVL56_14205 SM00220 Serine/Threonine protein kinases, catalytic domain AVL56_14250 SM00822 AVL56_14250 AVL56_14260 SM00422 helix_turn_helix, mercury resistance AVL56_14285 SM00060 Fibronectin type 3 domain AVL56_14285 SM00631 AVL56_14285 AVL56_14460 SM00642 Alpha-amylase domain AVL56_14670 SM00382 ATPases associated with a variety of cellular activities AVL56_14705 SM00347 helix_turn_helix multiple antibiotic resistance protein AVL56_14720 SM00487 DEAD-like helicases superfamily AVL56_14720 SM00490 helicase superfamily c-terminal domain AVL56_14725 SM01322 AVL56_14725 AVL56_14730 SM00347 helix_turn_helix multiple antibiotic resistance protein AVL56_14755 SM00271 DnaJ molecular chaperone homology domain AVL56_14780 SM00862 Transcriptional regulatory protein, C terminal AVL56_14795 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL56_14820 SM00245 tail specific protease AVL56_14850 SM00090 RIO-like kinase AVL56_14870 SM00342 helix_turn_helix, arabinose operon control protein AVL56_14885 SM00487 DEAD-like helicases superfamily AVL56_14885 SM00490 helicase superfamily c-terminal domain AVL56_14900 SM00028 Tetratricopeptide repeats AVL56_14910 SM00327 von Willebrand factor (vWF) type A domain AVL56_14965 SM01321 AVL56_14965 AVL56_15005 SM00354 helix_turn _helix lactose operon repressor AVL56_15015 SM00640 Glycosyl hydrolases family 32 AVL56_15065 SM01011 Aminopeptidase P, N-terminal domain AVL56_15090 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL56_15090 SM00387 Histidine kinase-like ATPases AVL56_15090 SM00388 His Kinase A (phosphoacceptor) domain AVL56_15090 SM00448 cheY-homologous receiver domain AVL56_15180 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL56_15180 SM00895 AVL56_15180 AVL56_15190 SM00644 AVL56_15190 AVL56_15245 SM00957 SecA DEAD-like domain AVL56_15245 SM00958 SecA preprotein cross-linking domain AVL56_15260 SM00864 Tubulin/FtsZ family, GTPase domain AVL56_15260 SM00865 Tubulin/FtsZ family, C-terminal domain AVL56_15265 SM00842 Cell division protein FtsA AVL56_15375 SM00028 Tetratricopeptide repeats AVL56_15375 SM00267 diguanylate cyclase AVL56_15390 SM00387 Histidine kinase-like ATPases AVL56_15430 SM00732 Likely ribonuclease with RNase H fold. AVL56_15440 SM00382 ATPases associated with a variety of cellular activities AVL56_15470 SM01321 AVL56_15470 AVL56_15515 SM00986 Uracil DNA glycosylase superfamily AVL56_15515 SM00987 UreE urease accessory protein, C-terminal domain AVL56_15540 SM00829 Enoylreductase AVL56_15545 SM00421 helix_turn_helix, Lux Regulon AVL56_15545 SM00448 cheY-homologous receiver domain AVL56_15570 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AVL56_15575 SM00226 Low molecular weight phosphatase family AVL56_15590 SM00448 cheY-homologous receiver domain AVL56_15600 SM00448 cheY-homologous receiver domain AVL56_15600 SM00862 Transcriptional regulatory protein, C terminal AVL56_15605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_15605 SM00387 Histidine kinase-like ATPases AVL56_15605 SM00388 His Kinase A (phosphoacceptor) domain AVL56_15675 SM00020 Trypsin-like serine protease AVL56_15705 SM00421 helix_turn_helix, Lux Regulon AVL56_15705 SM00448 cheY-homologous receiver domain AVL56_15715 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL56_15715 SM00895 AVL56_15715 AVL56_15740 SM00267 diguanylate cyclase AVL56_15740 SM00448 cheY-homologous receiver domain AVL56_15785 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL56_15785 SM00091 PAS domain AVL56_15785 SM00387 Histidine kinase-like ATPases AVL56_15785 SM00388 His Kinase A (phosphoacceptor) domain AVL56_15785 SM00448 cheY-homologous receiver domain AVL56_15805 SM00530 Helix-turn-helix XRE-family like proteins AVL56_15835 SM00450 Rhodanese Homology Domain AVL56_15970 SM00448 cheY-homologous receiver domain AVL56_15985 SM01230 AVL56_15985 AVL56_15995 SM00091 PAS domain AVL56_15995 SM00387 Histidine kinase-like ATPases AVL56_15995 SM00388 His Kinase A (phosphoacceptor) domain AVL56_16000 SM00382 ATPases associated with a variety of cellular activities AVL56_16000 SM00448 cheY-homologous receiver domain AVL56_16005 SM00073 Histidine Phosphotransfer domain AVL56_16010 SM00563 Phosphate acyltransferases AVL56_16025 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL56_16025 SM00091 PAS domain AVL56_16025 SM00267 diguanylate cyclase AVL56_16035 SM00387 Histidine kinase-like ATPases AVL56_16035 SM00388 His Kinase A (phosphoacceptor) domain AVL56_16035 SM00448 cheY-homologous receiver domain AVL56_16035 SM01358 AVL56_16035 AVL56_16160 SM00267 diguanylate cyclase AVL56_16165 SM00996 S-adenosyl-L-homocysteine hydrolase AVL56_16165 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AVL56_16215 SM00028 Tetratricopeptide repeats AVL56_16225 SM00387 Histidine kinase-like ATPases AVL56_16230 SM01034 Sensors of blue-light using FAD AVL56_16240 SM00382 ATPases associated with a variety of cellular activities AVL56_16265 SM00267 diguanylate cyclase AVL56_16270 SM00028 Tetratricopeptide repeats AVL56_16270 SM00267 diguanylate cyclase AVL56_16280 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL56_16280 SM00895 AVL56_16280 AVL56_16315 SM00710 Parallel beta-helix repeats AVL56_16330 SM00710 Parallel beta-helix repeats AVL56_16335 SM00822 AVL56_16335 AVL56_16370 SM00240 Forkhead associated domain AVL56_16375 SM00331 Sigma factor PP2C-like phosphatases AVL56_16375 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AVL56_16380 SM00240 Forkhead associated domain AVL56_16390 SM00240 Forkhead associated domain AVL56_16405 SM00220 Serine/Threonine protein kinases, catalytic domain AVL56_16410 SM00331 Sigma factor PP2C-like phosphatases AVL56_16410 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AVL56_16415 SM00240 Forkhead associated domain AVL56_16420 SM00240 Forkhead associated domain AVL56_16420 SM00382 ATPases associated with a variety of cellular activities AVL56_16425 SM00487 DEAD-like helicases superfamily AVL56_16425 SM00490 helicase superfamily c-terminal domain AVL56_16440 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL56_16440 SM00895 AVL56_16440 AVL56_16475 SM00267 diguanylate cyclase AVL56_16480 SM00155 Phospholipase D. Active site motifs. AVL56_16510 SM00448 cheY-homologous receiver domain AVL56_16520 SM00387 Histidine kinase-like ATPases AVL56_16525 SM00849 Metallo-beta-lactamase superfamily AVL56_16530 SM00486 DNA polymerase type-B family AVL56_16535 SM00054 EF-hand, calcium binding motif AVL56_16565 SM00360 RNA recognition motif AVL56_16605 SM00986 Uracil DNA glycosylase superfamily AVL56_16605 SM00987 UreE urease accessory protein, C-terminal domain AVL56_16610 SM00052 Putative diguanylate phosphodiesterase AVL56_16610 SM00267 diguanylate cyclase AVL56_16610 SM00448 cheY-homologous receiver domain AVL56_16685 SM00173 Ras subfamily of RAS small GTPases AVL56_16685 SM00175 Rab subfamily of small GTPases AVL56_16690 SM00052 Putative diguanylate phosphodiesterase AVL56_16690 SM00267 diguanylate cyclase AVL56_16700 SM00563 Phosphate acyltransferases AVL56_16705 SM00563 Phosphate acyltransferases AVL56_16830 SM00052 Putative diguanylate phosphodiesterase AVL56_16830 SM00267 diguanylate cyclase AVL56_16845 SM00849 Metallo-beta-lactamase superfamily AVL56_16875 SM00344 helix_turn_helix ASNC type AVL56_16880 SM00100 Cyclic nucleotide-monophosphate binding domain AVL56_16890 SM00849 Metallo-beta-lactamase superfamily AVL56_16930 SM00900 AVL56_16930 AVL56_17015 SM00028 Tetratricopeptide repeats AVL56_17020 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AVL56_17030 SM00267 diguanylate cyclase AVL56_17030 SM00448 cheY-homologous receiver domain AVL56_17035 SM00479 AVL56_17035 AVL56_17040 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL56_17055 SM00387 Histidine kinase-like ATPases AVL56_17055 SM00388 His Kinase A (phosphoacceptor) domain AVL56_17055 SM00448 cheY-homologous receiver domain AVL56_17085 SM00421 helix_turn_helix, Lux Regulon AVL56_17085 SM00448 cheY-homologous receiver domain AVL56_17100 SM00632 AVL56_17100 AVL56_17100 SM00642 Alpha-amylase domain AVL56_17115 SM01358 AVL56_17115 AVL56_17120 SM00248 ankyrin repeats AVL56_17125 SM01060 AVL56_17125 AVL56_17235 SM00984 UDP binding domain AVL56_17370 SM00662 RNA polymerases D AVL56_17375 SM00363 S4 RNA-binding domain AVL56_17375 SM01390 AVL56_17375 AVL56_17435 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AVL56_17440 SM01374 AVL56_17440 AVL56_17445 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL56_17445 SM00387 Histidine kinase-like ATPases AVL56_17445 SM00388 His Kinase A (phosphoacceptor) domain AVL56_17445 SM00448 cheY-homologous receiver domain AVL56_17460 SM00967 RNA 2'-O ribose methyltransferase substrate binding AVL56_17465 SM00316 Ribosomal protein S1-like RNA-binding domain AVL56_17465 SM00357 Cold shock protein domain AVL56_17465 SM00955 AVL56_17465 AVL56_17480 SM00671 Sel1-like repeats. AVL56_17530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_17535 SM00344 helix_turn_helix ASNC type AVL56_17550 SM00357 Cold shock protein domain AVL56_17580 SM00448 cheY-homologous receiver domain AVL56_17590 SM00387 Histidine kinase-like ATPases AVL56_17595 SM00448 cheY-homologous receiver domain AVL56_17605 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AVL56_17625 SM00382 ATPases associated with a variety of cellular activities AVL56_17630 SM00421 helix_turn_helix, Lux Regulon AVL56_17645 SM00382 ATPases associated with a variety of cellular activities AVL56_17645 SM01086 C-terminal, D2-small domain, of ClpB protein AVL56_17660 SM00487 DEAD-like helicases superfamily AVL56_17660 SM00490 helicase superfamily c-terminal domain AVL56_17675 SM00919 Malic enzyme, NAD binding domain AVL56_17675 SM01274 AVL56_17675 AVL56_17725 SM00052 Putative diguanylate phosphodiesterase AVL56_17730 SM00052 Putative diguanylate phosphodiesterase AVL56_17740 SM00382 ATPases associated with a variety of cellular activities AVL56_17745 SM00382 ATPases associated with a variety of cellular activities AVL56_17745 SM00962 SRP54-type protein, GTPase domain AVL56_17745 SM00963 SRP54-type protein, helical bundle domain AVL56_17815 SM00052 Putative diguanylate phosphodiesterase AVL56_17830 SM00382 ATPases associated with a variety of cellular activities AVL56_17835 SM00448 cheY-homologous receiver domain AVL56_17835 SM00862 Transcriptional regulatory protein, C terminal AVL56_17840 SM00387 Histidine kinase-like ATPases AVL56_17840 SM00388 His Kinase A (phosphoacceptor) domain AVL56_17850 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AVL56_17855 SM00062 Bacterial periplasmic substrate-binding proteins AVL56_17895 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL56_17955 SM00838 Elongation factor G C-terminus AVL56_17955 SM00889 Elongation factor G, domain IV AVL56_17970 SM00663 RNA polymerase I subunit A N-terminus AVL56_17995 SM00649 Ribosomal protein L11/L12 AVL56_18000 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AVL56_18000 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AVL56_18015 SM00382 ATPases associated with a variety of cellular activities AVL56_18035 SM00487 DEAD-like helicases superfamily AVL56_18035 SM00490 helicase superfamily c-terminal domain AVL56_18045 SM00782 PhnA Zinc-Ribbon AVL56_18065 SM00642 Alpha-amylase domain AVL56_18110 SM00247 Beta/gamma crystallins AVL56_18120 SM00487 DEAD-like helicases superfamily AVL56_18120 SM00490 helicase superfamily c-terminal domain AVL56_18210 SM00244 prohibitin homologues AVL56_18215 SM00244 prohibitin homologues AVL56_18235 SM01340 AVL56_18235 AVL56_18240 SM00257 Lysin motif AVL56_18240 SM00646 AVL56_18240 AVL56_18300 SM00382 ATPases associated with a variety of cellular activities AVL56_18355 SM00387 Histidine kinase-like ATPases AVL56_18355 SM00388 His Kinase A (phosphoacceptor) domain AVL56_18365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_18370 SM00387 Histidine kinase-like ATPases AVL56_18375 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL56_18380 SM00354 helix_turn _helix lactose operon repressor AVL56_18400 SM00382 ATPases associated with a variety of cellular activities AVL56_18460 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL56_18460 SM00866 AVL56_18460 AVL56_18520 SM00382 ATPases associated with a variety of cellular activities AVL56_18525 SM00382 ATPases associated with a variety of cellular activities AVL56_18550 SM00382 ATPases associated with a variety of cellular activities AVL56_18585 SM00841 Elongation factor P, C-terminal AVL56_18585 SM01185 AVL56_18585 AVL56_18730 SM00867 YceI-like domain AVL56_18765 SM00829 Enoylreductase AVL56_18770 SM00267 diguanylate cyclase AVL56_18775 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_18775 SM00387 Histidine kinase-like ATPases AVL56_18775 SM00388 His Kinase A (phosphoacceptor) domain AVL56_18775 SM00448 cheY-homologous receiver domain AVL56_18800 SM00382 ATPases associated with a variety of cellular activities AVL56_18870 SM00420 helix_turn_helix, Deoxyribose operon repressor AVL56_18870 SM01134 AVL56_18870 AVL56_18880 SM00267 diguanylate cyclase AVL56_18895 SM00342 helix_turn_helix, arabinose operon control protein AVL56_18895 SM01009 AlkA N-terminal domain AVL56_18925 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AVL56_18925 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AVL56_18945 SM00833 Cobalamin synthesis protein cobW C-terminal domain AVL56_18955 SM00052 Putative diguanylate phosphodiesterase AVL56_18955 SM00267 diguanylate cyclase AVL56_18965 SM00883 Chaperonin 10 Kd subunit AVL56_18995 SM00878 Biotin carboxylase C-terminal domain AVL56_19015 SM00479 AVL56_19015 AVL56_19015 SM00990 AVL56_19015 AVL56_19040 SM00062 Bacterial periplasmic substrate-binding proteins AVL56_19060 SM00798 AICARFT/IMPCHase bienzyme AVL56_19060 SM00851 MGS-like domain AVL56_19070 SM01209 AVL56_19070 AVL56_19070 SM01210 AVL56_19070 AVL56_19115 SM00448 cheY-homologous receiver domain AVL56_19115 SM00862 Transcriptional regulatory protein, C terminal AVL56_19120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL56_19120 SM00387 Histidine kinase-like ATPases AVL56_19120 SM00388 His Kinase A (phosphoacceptor) domain AVL56_19140 SM00363 S4 RNA-binding domain AVL56_19155 SM00382 ATPases associated with a variety of cellular activities AVL56_19205 SM00849 Metallo-beta-lactamase superfamily AVL56_19235 SM00867 YceI-like domain AVL56_19270 SM00382 ATPases associated with a variety of cellular activities AVL56_19290 SM00320 WD40 repeats AVL56_19310 SM00316 Ribosomal protein S1-like RNA-binding domain AVL56_19310 SM00732 Likely ribonuclease with RNase H fold. AVL56_19335 SM00631 AVL56_19335 AVL56_19365 SM00342 helix_turn_helix, arabinose operon control protein AVL56_19365 SM00871 Bacterial transcription activator, effector binding domain AVL56_19455 SM00342 helix_turn_helix, arabinose operon control protein AVL56_19495 SM00267 diguanylate cyclase AVL56_19535 SM00563 Phosphate acyltransferases AVL56_19560 SM00382 ATPases associated with a variety of cellular activities AVL56_19625 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AVL56_19750 SM00354 helix_turn _helix lactose operon repressor AVL56_19765 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL56_19775 SM01144 AVL56_19775 AVL56_19800 SM00382 ATPases associated with a variety of cellular activities AVL56_19840 SM00470 ParB-like nuclease domain AVL56_19855 SM01228 AVL56_19855