locus-tag class description EP12_00005 PF00308 Bacterial dnaA protein EP12_00005 PF08299 Bacterial dnaA protein helix-turn-helix EP12_00005 PF11638 DnaA N-terminal domain EP12_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain EP12_00010 PF02767 DNA polymerase III beta subunit, central domain EP12_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain EP12_00015 PF02463 RecF/RecN/SMC N terminal domain EP12_00030 PF05746 DALR anticodon binding domain EP12_00030 PF02092 Glycyl-tRNA synthetase beta subunit EP12_00035 PF02091 Glycyl-tRNA synthetase alpha subunit EP12_00040 PF03352 Methyladenine glycosylase EP12_00050 PF04220 Der GTPase activator (YihI) EP12_00060 PF00034 Cytochrome c EP12_00065 PF01926 50S ribosome-binding GTPase EP12_00070 PF01612 3'-5' exonuclease EP12_00070 PF01367 5'-3' exonuclease, C-terminal SAM fold EP12_00070 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EP12_00070 PF00476 DNA polymerase family A EP12_00080 PF02386 Cation transport protein EP12_00090 PF01029 NusB family EP12_00090 PF01189 16S rRNA methyltransferase RsmB/F EP12_00095 PF02911 Formyl transferase, C-terminal domain EP12_00095 PF00551 Formyl transferase EP12_00100 PF01327 Polypeptide deformylase EP12_00105 PF01476 LysM domain EP12_00110 PF17782 DprA winged helix domain EP12_00110 PF02481 DNA recombination-mediator protein A EP12_00115 PF04361 Protein of unknown function (DUF494) EP12_00125 PF01300 Telomere recombination EP12_00130 PF01218 Coproporphyrinogen III oxidase EP12_00145 PF08501 Shikimate dehydrogenase substrate binding domain EP12_00145 PF01488 Shikimate / quinate 5-dehydrogenase EP12_00145 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EP12_00150 PF00132 Bacterial transferase hexapeptide (six repeats) EP12_00205 PF07733 Bacterial DNA polymerase III alpha NTPase domain EP12_00205 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EP12_00205 PF14579 Helix-hairpin-helix motif EP12_00205 PF02811 PHP domain EP12_00205 PF01336 OB-fold nucleic acid binding domain EP12_00235 PF04389 Peptidase family M28 EP12_00235 PF02225 PA domain EP12_00240 PF01467 Cytidylyltransferase-like EP12_00250 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase EP12_00260 PF04127 DNA / pantothenate metabolism flavoprotein EP12_00260 PF02441 Flavoprotein EP12_00265 PF04002 RadC-like JAB domain EP12_00285 PF06082 Exopolysaccharide biosynthesis protein YbjH EP12_00290 PF00830 Ribosomal L28 family EP12_00295 PF00471 Ribosomal protein L33 EP12_00305 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EP12_00305 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EP12_00305 PF06827 Zinc finger found in FPG and IleRS EP12_00320 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EP12_00335 PF03707 Bacterial signalling protein N terminal repeat EP12_00335 PF00990 Diguanylate cyclase, GGDEF domain EP12_00335 PF00563 EAL domain EP12_00340 PF00155 Aminotransferase class I and II EP12_00345 PF00107 Zinc-binding dehydrogenase EP12_00345 PF08240 Alcohol dehydrogenase GroES-like domain EP12_00350 PF00581 Rhodanese-like domain EP12_00355 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease EP12_00355 PF01694 Rhomboid family EP12_00365 PF04345 Chorismate lyase EP12_00370 PF01040 UbiA prenyltransferase family EP12_00375 PF04380 Membrane fusogenic activity EP12_00380 PF13361 UvrD-like helicase C-terminal domain EP12_00380 PF00580 UvrD/REP helicase N-terminal domain EP12_00385 PF03707 Bacterial signalling protein N terminal repeat EP12_00385 PF00563 EAL domain EP12_00385 PF00990 Diguanylate cyclase, GGDEF domain EP12_00390 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EP12_00440 PF00005 ABC transporter EP12_00450 PF00593 TonB dependent receptor EP12_00450 PF07715 TonB-dependent Receptor Plug Domain EP12_00455 PF07715 TonB-dependent Receptor Plug Domain EP12_00455 PF00593 TonB dependent receptor EP12_00460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP12_00460 PF02770 Acyl-CoA dehydrogenase, middle domain EP12_00460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP12_00465 PF03466 LysR substrate binding domain EP12_00465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_00470 PF00753 Metallo-beta-lactamase superfamily EP12_00475 PF04317 YcjX-like family, DUF463 EP12_00490 PF04055 Radical SAM superfamily EP12_00490 PF06968 Biotin and Thiamin Synthesis associated domain EP12_00495 PF05690 Thiazole biosynthesis protein ThiG EP12_00505 PF00899 ThiF family EP12_00510 PF02581 Thiamine monophosphate synthase EP12_00515 PF13667 ThiC-associated domain EP12_00515 PF01964 Radical SAM ThiC family EP12_00520 PF07715 TonB-dependent Receptor Plug Domain EP12_00520 PF00593 TonB dependent receptor EP12_00535 PF00881 Nitroreductase family EP12_00535 PF01996 F420-0:Gamma-glutamyl ligase EP12_00555 PF04055 Radical SAM superfamily EP12_00570 PF08362 YcdC-like protein, C-terminal region EP12_00570 PF00440 Bacterial regulatory proteins, tetR family EP12_00575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_00575 PF03466 LysR substrate binding domain EP12_00580 PF00202 Aminotransferase class-III EP12_00585 PF00171 Aldehyde dehydrogenase family EP12_00595 PF07687 Peptidase dimerisation domain EP12_00595 PF01546 Peptidase family M20/M25/M40 EP12_00600 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EP12_00615 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase EP12_00620 PF02602 Uroporphyrinogen-III synthase HemD EP12_00625 PF03900 Porphobilinogen deaminase, C-terminal domain EP12_00625 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain EP12_00630 PF00072 Response regulator receiver domain EP12_00630 PF00990 Diguanylate cyclase, GGDEF domain EP12_00640 PF00625 Guanylate kinase EP12_00645 PF01192 RNA polymerase Rpb6 EP12_00650 PF13291 ACT domain EP12_00650 PF04607 Region found in RelA / SpoT proteins EP12_00650 PF02824 TGS domain EP12_00655 PF01042 Endoribonuclease L-PSP EP12_00660 PF12105 SpoU, rRNA methylase, C-terminal EP12_00660 PF00588 SpoU rRNA Methylase family EP12_00665 PF00270 DEAD/DEAH box helicase EP12_00665 PF00271 Helicase conserved C-terminal domain EP12_00665 PF17191 RecG wedge domain EP12_00675 PF08534 Redoxin EP12_00695 PF00528 Binding-protein-dependent transport system inner membrane component EP12_00700 PF08402 TOBE domain EP12_00700 PF00005 ABC transporter EP12_00705 PF05552 Conserved TM helix EP12_00705 PF00924 Mechanosensitive ion channel EP12_00720 PF00593 TonB dependent receptor EP12_00735 PF00072 Response regulator receiver domain EP12_00735 PF00486 Transcriptional regulatory protein, C terminal EP12_00740 PF13181 Tetratricopeptide repeat EP12_00745 PF07715 TonB-dependent Receptor Plug Domain EP12_00745 PF00593 TonB dependent receptor EP12_00750 PF00491 Arginase family EP12_00765 PF00491 Arginase family EP12_00770 PF00491 Arginase family EP12_00775 PF00989 PAS fold EP12_00775 PF01627 Hpt domain EP12_00775 PF18415 Histidine kinase receptor ArcB trans-membrane domain EP12_00775 PF00072 Response regulator receiver domain EP12_00775 PF00512 His Kinase A (phospho-acceptor) domain EP12_00775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_00785 PF02653 Branched-chain amino acid transport system / permease component EP12_00790 PF02653 Branched-chain amino acid transport system / permease component EP12_00795 PF00005 ABC transporter EP12_00795 PF12399 Branched-chain amino acid ATP-binding cassette transporter EP12_00800 PF00005 ABC transporter EP12_00805 PF01774 UreD urease accessory protein EP12_00810 PF00547 Urease, gamma subunit EP12_00815 PF00699 Urease beta subunit EP12_00820 PF00449 Urease alpha-subunit, N-terminal domain EP12_00820 PF01979 Amidohydrolase family EP12_00825 PF02814 UreE urease accessory protein, N-terminal domain EP12_00825 PF05194 UreE urease accessory protein, C-terminal domain EP12_00830 PF01730 UreF EP12_00835 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP12_00850 PF00990 Diguanylate cyclase, GGDEF domain EP12_00860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_00860 PF03466 LysR substrate binding domain EP12_00865 PF01810 LysE type translocator EP12_00880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP12_00880 PF00529 HlyD membrane-fusion protein of T1SS EP12_00885 PF00873 AcrB/AcrD/AcrF family EP12_00895 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain EP12_00895 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain EP12_00900 PF00850 Histone deacetylase domain EP12_00915 PF00672 HAMP domain EP12_00915 PF12729 Four helix bundle sensory module for signal transduction EP12_00915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP12_00930 PF00925 GTP cyclohydrolase II EP12_00935 PF08448 PAS fold EP12_00935 PF00990 Diguanylate cyclase, GGDEF domain EP12_00935 PF00563 EAL domain EP12_00950 PF00570 HRDC domain EP12_00950 PF00271 Helicase conserved C-terminal domain EP12_00950 PF09382 RQC domain EP12_00950 PF16124 RecQ zinc-binding EP12_00950 PF00270 DEAD/DEAH box helicase EP12_00955 PF03061 Thioesterase superfamily EP12_00960 PF03448 MgtE intracellular N domain EP12_00960 PF01769 Divalent cation transporter EP12_00960 PF00571 CBS domain EP12_00965 PF00892 EamA-like transporter family EP12_00970 PF00990 Diguanylate cyclase, GGDEF domain EP12_00970 PF00072 Response regulator receiver domain EP12_00975 PF13361 UvrD-like helicase C-terminal domain EP12_00975 PF00580 UvrD/REP helicase N-terminal domain EP12_00980 PF00132 Bacterial transferase hexapeptide (six repeats) EP12_00980 PF06426 Serine acetyltransferase, N-terminal EP12_00985 PF13419 Haloacid dehalogenase-like hydrolase EP12_00990 PF02899 Phage integrase, N-terminal SAM-like domain EP12_00990 PF00589 Phage integrase family EP12_01005 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EP12_01005 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EP12_01020 PF01569 PAP2 superfamily EP12_01025 PF03737 Aldolase/RraA EP12_01035 PF02441 Flavoprotein EP12_01040 PF02875 Mur ligase family, glutamate ligase domain EP12_01040 PF01225 Mur ligase family, catalytic domain EP12_01040 PF08245 Mur ligase middle domain EP12_01045 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain EP12_01050 PF00719 Inorganic pyrophosphatase EP12_01075 PF17755 UvrA DNA-binding domain EP12_01075 PF00005 ABC transporter EP12_01075 PF17760 UvrA interaction domain EP12_01080 PF07690 Major Facilitator Superfamily EP12_01085 PF13419 Haloacid dehalogenase-like hydrolase EP12_01100 PF00356 Bacterial regulatory proteins, lacI family EP12_01105 PF01263 Aldose 1-epimerase EP12_01110 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain EP12_01110 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain EP12_01115 PF00288 GHMP kinases N terminal domain EP12_01115 PF08544 GHMP kinases C terminal EP12_01115 PF10509 Galactokinase galactose-binding signature EP12_01120 PF00474 Sodium:solute symporter family EP12_01175 PF00239 Resolvase, N terminal domain EP12_01175 PF02796 Helix-turn-helix domain of resolvase EP12_01185 PF14490 Helix-hairpin-helix containing domain EP12_01185 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain EP12_01185 PF13538 UvrD-like helicase C-terminal domain EP12_01205 PF16874 Glycosyl hydrolase family 36 C-terminal domain EP12_01205 PF16875 Glycosyl hydrolase family 36 N-terminal domain EP12_01215 PF04820 Tryptophan halogenase EP12_01220 PF00474 Sodium:solute symporter family EP12_01230 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EP12_01230 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EP12_01260 PF04085 rod shape-determining protein MreC EP12_01265 PF04093 rod shape-determining protein MreD EP12_01270 PF02545 Maf-like protein EP12_01275 PF00575 S1 RNA binding domain EP12_01275 PF10150 Ribonuclease E/G family EP12_01290 PF01523 Putative modulator of DNA gyrase EP12_01295 PF04751 Protein of unknown function (DUF615) EP12_01300 PF01523 Putative modulator of DNA gyrase EP12_01315 PF00486 Transcriptional regulatory protein, C terminal EP12_01315 PF00072 Response regulator receiver domain EP12_01320 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP12_01320 PF00512 His Kinase A (phospho-acceptor) domain EP12_01320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_01335 PF02390 Putative methyltransferase EP12_01340 PF03952 Enolase, N-terminal domain EP12_01340 PF00113 Enolase, C-terminal TIM barrel domain EP12_01345 PF14815 NUDIX domain EP12_01345 PF00730 HhH-GPD superfamily base excision DNA repair protein EP12_01345 PF00633 Helix-hairpin-helix motif EP12_01350 PF04362 Bacterial Fe(2+) trafficking EP12_01375 PF11867 Domain of unknown function (DUF3387) EP12_01375 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) EP12_01375 PF18766 SWI2/SNF2 ATPase EP12_01395 PF02384 N-6 DNA Methylase EP12_01415 PF01131 DNA topoisomerase EP12_01415 PF01751 Toprim domain EP12_01415 PF01396 Topoisomerase DNA binding C4 zinc finger EP12_01445 PF00589 Phage integrase family EP12_01445 PF02899 Phage integrase, N-terminal SAM-like domain EP12_01480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP12_01480 PF00529 HlyD membrane-fusion protein of T1SS EP12_01485 PF00873 AcrB/AcrD/AcrF family EP12_01490 PF16916 Dimerisation domain of Zinc Transporter EP12_01490 PF01545 Cation efflux family EP12_01505 PF00884 Sulfatase EP12_01505 PF08019 Phosphoethanolamine transferase EptA/EptB EP12_01510 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase EP12_01520 PF00535 Glycosyl transferase family 2 EP12_01530 PF00486 Transcriptional regulatory protein, C terminal EP12_01530 PF00072 Response regulator receiver domain EP12_01575 PF09278 MerR, DNA binding EP12_01575 PF00376 MerR family regulatory protein EP12_01580 PF00403 Heavy-metal-associated domain EP12_01620 PF13520 Amino acid permease EP12_01630 PF07731 Multicopper oxidase EP12_01630 PF07732 Multicopper oxidase EP12_01630 PF00394 Multicopper oxidase EP12_01705 PF01266 FAD dependent oxidoreductase EP12_01710 PF07715 TonB-dependent Receptor Plug Domain EP12_01710 PF00593 TonB dependent receptor EP12_01720 PF00512 His Kinase A (phospho-acceptor) domain EP12_01720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_01720 PF16750 Sensor domain of 2-component histidine kinase EP12_01720 PF00672 HAMP domain EP12_01725 PF00072 Response regulator receiver domain EP12_01725 PF00486 Transcriptional regulatory protein, C terminal EP12_01735 PF07690 Major Facilitator Superfamily EP12_01735 PF00083 Sugar (and other) transporter EP12_01740 PF02743 Cache domain EP12_01740 PF00672 HAMP domain EP12_01740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP12_01745 PF00072 Response regulator receiver domain EP12_01750 PF01627 Hpt domain EP12_01750 PF02895 Signal transducing histidine kinase, homodimeric domain EP12_01750 PF09078 CheY binding EP12_01750 PF01584 CheW-like domain EP12_01750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_01755 PF01584 CheW-like domain EP12_01760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP12_01760 PF08447 PAS fold EP12_01760 PF13426 PAS domain EP12_01765 PF03705 CheR methyltransferase, all-alpha domain EP12_01765 PF01739 CheR methyltransferase, SAM binding domain EP12_01770 PF03975 CheD chemotactic sensory transduction EP12_01775 PF00072 Response regulator receiver domain EP12_01775 PF01339 CheB methylesterase EP12_01805 PF01258 Prokaryotic dksA/traR C4-type zinc finger EP12_01845 PF05199 GMC oxidoreductase EP12_01845 PF00732 GMC oxidoreductase EP12_01865 PF00248 Aldo/keto reductase family EP12_01870 PF08212 Lipocalin-like domain EP12_01885 PF00271 Helicase conserved C-terminal domain EP12_01885 PF00270 DEAD/DEAH box helicase EP12_01885 PF03880 DbpA RNA binding domain EP12_01895 PF05649 Peptidase family M13 EP12_01895 PF01431 Peptidase family M13 EP12_01900 PF03737 Aldolase/RraA EP12_01905 PF00080 Copper/zinc superoxide dismutase (SODC) EP12_01910 PF00563 EAL domain EP12_01910 PF08668 HDOD domain EP12_01915 PF00664 ABC transporter transmembrane region EP12_01915 PF00005 ABC transporter EP12_01925 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EP12_01930 PF00467 KOW motif EP12_01930 PF02357 Transcription termination factor nusG EP12_01945 PF00298 Ribosomal protein L11, RNA binding domain EP12_01945 PF03946 Ribosomal protein L11, N-terminal domain EP12_01950 PF00687 Ribosomal protein L1p/L10e family EP12_01955 PF00466 Ribosomal protein L10 EP12_01960 PF00542 Ribosomal protein L7/L12 C-terminal domain EP12_01960 PF16320 Ribosomal protein L7/L12 dimerisation domain EP12_01965 PF04565 RNA polymerase Rpb2, domain 3 EP12_01965 PF10385 RNA polymerase beta subunit external 1 domain EP12_01965 PF04561 RNA polymerase Rpb2, domain 2 EP12_01965 PF04563 RNA polymerase beta subunit EP12_01965 PF04560 RNA polymerase Rpb2, domain 7 EP12_01965 PF00562 RNA polymerase Rpb2, domain 6 EP12_01970 PF04998 RNA polymerase Rpb1, domain 5 EP12_01970 PF04997 RNA polymerase Rpb1, domain 1 EP12_01970 PF04983 RNA polymerase Rpb1, domain 3 EP12_01970 PF00623 RNA polymerase Rpb1, domain 2 EP12_01970 PF05000 RNA polymerase Rpb1, domain 4 EP12_01975 PF00164 Ribosomal protein S12/S23 EP12_01980 PF00177 Ribosomal protein S7p/S5e EP12_02025 PF00300 Histidine phosphatase superfamily (branch 1) EP12_02030 PF00694 Aconitase C-terminal domain EP12_02030 PF00330 Aconitase family (aconitate hydratase) EP12_02035 PF00437 Type II/IV secretion system protein EP12_02040 PF00338 Ribosomal protein S10p/S20e EP12_02045 PF00297 Ribosomal protein L3 EP12_02050 PF00573 Ribosomal protein L4/L1 family EP12_02055 PF00276 Ribosomal protein L23 EP12_02060 PF03947 Ribosomal Proteins L2, C-terminal domain EP12_02060 PF00181 Ribosomal Proteins L2, RNA binding domain EP12_02065 PF00203 Ribosomal protein S19 EP12_02070 PF00237 Ribosomal protein L22p/L17e EP12_02075 PF00189 Ribosomal protein S3, C-terminal domain EP12_02075 PF07650 KH domain EP12_02080 PF00252 Ribosomal protein L16p/L10e EP12_02085 PF00831 Ribosomal L29 protein EP12_02090 PF00366 Ribosomal protein S17 EP12_02095 PF13439 Glycosyltransferase Family 4 EP12_02095 PF00534 Glycosyl transferases group 1 EP12_02100 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EP12_02110 PF03471 Transporter associated domain EP12_02110 PF00999 Sodium/hydrogen exchanger family EP12_02110 PF02080 TrkA-C domain EP12_02120 PF02743 Cache domain EP12_02120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP12_02120 PF00672 HAMP domain EP12_02125 PF01432 Peptidase family M3 EP12_02140 PF01842 ACT domain EP12_02140 PF00551 Formyl transferase EP12_02170 PF14814 Bifunctional transglycosylase second domain EP12_02170 PF00905 Penicillin binding protein transpeptidase domain EP12_02170 PF00912 Transglycosylase EP12_02190 PF12833 Helix-turn-helix domain EP12_02205 PF00543 Nitrogen regulatory protein P-II EP12_02210 PF00909 Ammonium Transporter Family EP12_02225 PF04261 Dyp-type peroxidase family EP12_02230 PF00202 Aminotransferase class-III EP12_02245 PF00873 AcrB/AcrD/AcrF family EP12_02260 PF00521 DNA gyrase/topoisomerase IV, subunit A EP12_02260 PF03989 DNA gyrase C-terminal domain, beta-propeller EP12_02270 PF00990 Diguanylate cyclase, GGDEF domain EP12_02270 PF03707 Bacterial signalling protein N terminal repeat EP12_02270 PF13188 PAS domain EP12_02270 PF00563 EAL domain EP12_02285 PF04958 Arginine N-succinyltransferase beta subunit EP12_02290 PF00202 Aminotransferase class-III EP12_02300 PF00117 Glutamine amidotransferase class-I EP12_02305 PF00579 tRNA synthetases class I (W and Y) EP12_02310 PF00834 Ribulose-phosphate 3 epimerase family EP12_02340 PF01761 3-dehydroquinate synthase EP12_02345 PF01202 Shikimate kinase EP12_02350 PF11741 AMIN domain EP12_02350 PF00263 Bacterial type II and III secretion system protein EP12_02350 PF03958 Bacterial type II/III secretion system short domain EP12_02350 PF07660 Secretin and TonB N terminus short domain EP12_02375 PF17092 Penicillin-binding protein OB-like domain EP12_02375 PF00912 Transglycosylase EP12_02375 PF00905 Penicillin binding protein transpeptidase domain EP12_02380 PF03949 Malic enzyme, NAD binding domain EP12_02380 PF00390 Malic enzyme, N-terminal domain EP12_02390 PF02798 Glutathione S-transferase, N-terminal domain EP12_02395 PF06628 Catalase-related immune-responsive EP12_02395 PF00199 Catalase EP12_02415 PF03707 Bacterial signalling protein N terminal repeat EP12_02415 PF00563 EAL domain EP12_02415 PF00990 Diguanylate cyclase, GGDEF domain EP12_02420 PF00696 Amino acid kinase family EP12_02420 PF00583 Acetyltransferase (GNAT) family EP12_02425 PF00206 Lyase EP12_02425 PF14698 Argininosuccinate lyase C-terminal EP12_02430 PF00764 Arginosuccinate synthase EP12_02435 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EP12_02435 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EP12_02440 PF00696 Amino acid kinase family EP12_02445 PF02774 Semialdehyde dehydrogenase, dimerisation domain EP12_02445 PF01118 Semialdehyde dehydrogenase, NAD binding domain EP12_02450 PF02142 MGS-like domain EP12_02475 PF00486 Transcriptional regulatory protein, C terminal EP12_02475 PF00072 Response regulator receiver domain EP12_02485 PF12146 Serine aminopeptidase, S33 EP12_02490 PF00588 SpoU rRNA Methylase family EP12_02500 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EP12_02500 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EP12_02505 PF02556 Preprotein translocase subunit SecB EP12_02510 PF00462 Glutaredoxin EP12_02515 PF00581 Rhodanese-like domain EP12_02520 PF01551 Peptidase family M23 EP12_02540 PF03009 Glycerophosphoryl diester phosphodiesterase family EP12_02550 PF02666 Phosphatidylserine decarboxylase EP12_02555 PF03193 RsgA GTPase EP12_02560 PF00929 Exonuclease EP12_02595 PF00205 Thiamine pyrophosphate enzyme, central domain EP12_02595 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP12_02595 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP12_02600 PF10369 Small subunit of acetolactate synthase EP12_02610 PF02416 mttA/Hcf106 family EP12_02615 PF02416 mttA/Hcf106 family EP12_02630 PF01026 TatD related DNase EP12_02635 PF07694 5TMR of 5TMR-LYT EP12_02635 PF00990 Diguanylate cyclase, GGDEF domain EP12_02640 PF00490 Delta-aminolevulinic acid dehydratase EP12_02645 PF02541 Ppx/GppA phosphatase family EP12_02650 PF00270 DEAD/DEAH box helicase EP12_02650 PF00271 Helicase conserved C-terminal domain EP12_02655 PF00085 Thioredoxin EP12_02665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP12_02665 PF07498 Rho termination factor, N-terminal domain EP12_02665 PF07497 Rho termination factor, RNA-binding domain EP12_02670 PF01546 Peptidase family M20/M25/M40 EP12_02670 PF07687 Peptidase dimerisation domain EP12_02675 PF09308 LuxQ, periplasmic EP12_02675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_02675 PF00072 Response regulator receiver domain EP12_02675 PF00512 His Kinase A (phospho-acceptor) domain EP12_02680 PF06965 Na+/H+ antiporter 1 EP12_02685 PF00731 AIR carboxylase EP12_02690 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EP12_02690 PF02222 ATP-grasp domain EP12_02705 PF00210 Ferritin-like domain EP12_02725 PF00085 Thioredoxin EP12_02730 PF00709 Adenylosuccinate synthetase EP12_02735 PF00709 Adenylosuccinate synthetase EP12_02740 PF00171 Aldehyde dehydrogenase family EP12_02750 PF03553 Na+/H+ antiporter family EP12_02755 PF00933 Glycosyl hydrolase family 3 N terminal domain EP12_02765 PF07075 Protein of unknown function (DUF1343) EP12_02775 PF01168 Alanine racemase, N-terminal domain EP12_02775 PF00842 Alanine racemase, C-terminal domain EP12_02875 PF13673 Acetyltransferase (GNAT) domain EP12_02875 PF00958 GMP synthase C terminal domain EP12_02875 PF00117 Glutamine amidotransferase class-I EP12_02875 PF03352 Methyladenine glycosylase EP12_02875 PF13302 Acetyltransferase (GNAT) domain EP12_02910 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH EP12_02920 PF01979 Amidohydrolase family EP12_02950 PF00589 Phage integrase family EP12_02950 PF13495 Phage integrase, N-terminal SAM-like domain EP12_02955 PF00108 Thiolase, N-terminal domain EP12_02955 PF02803 Thiolase, C-terminal domain EP12_02960 PF00378 Enoyl-CoA hydratase/isomerase EP12_02960 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP12_02960 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP12_02975 PF00557 Metallopeptidase family M24 EP12_02985 PF00348 Polyprenyl synthetase EP12_02990 PF00829 Ribosomal prokaryotic L21 protein EP12_02995 PF01016 Ribosomal L27 protein EP12_03000 PF01926 50S ribosome-binding GTPase EP12_03000 PF01018 GTP1/OBG EP12_03010 PF09055 Nickel-containing superoxide dismutase EP12_03030 PF00186 Dihydrofolate reductase EP12_03035 PF04539 Sigma-70 region 3 EP12_03035 PF04542 Sigma-70 region 2 EP12_03035 PF00140 Sigma-70 factor, region 1.2 EP12_03035 PF04545 Sigma-70, region 4 EP12_03040 PF01476 LysM domain EP12_03040 PF01551 Peptidase family M23 EP12_03045 PF09335 SNARE associated Golgi protein EP12_03055 PF01975 Survival protein SurE EP12_03060 PF01142 tRNA pseudouridine synthase D (TruD) EP12_03065 PF02542 YgbB family EP12_03070 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EP12_03075 PF04977 Septum formation initiator EP12_03085 PF17200 Single Cache domain 2 EP12_03085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP12_03085 PF00672 HAMP domain EP12_03090 PF00171 Aldehyde dehydrogenase family EP12_03090 PF18327 Proline utilization A proline dehydrogenase N-terminal domain EP12_03090 PF14850 DNA-binding domain of Proline dehydrogenase EP12_03090 PF01619 Proline dehydrogenase EP12_03095 PF02321 Outer membrane efflux protein EP12_03110 PF00072 Response regulator receiver domain EP12_03110 PF00486 Transcriptional regulatory protein, C terminal EP12_03115 PF00672 HAMP domain EP12_03115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_03115 PF00512 His Kinase A (phospho-acceptor) domain EP12_03140 PF00293 NUDIX domain EP12_03145 PF02896 PEP-utilising enzyme, TIM barrel domain EP12_03145 PF00391 PEP-utilising enzyme, mobile domain EP12_03145 PF05524 PEP-utilising enzyme, N-terminal EP12_03145 PF01590 GAF domain EP12_03150 PF01925 Sulfite exporter TauE/SafE EP12_03155 PF01790 Prolipoprotein diacylglyceryl transferase EP12_03165 PF00072 Response regulator receiver domain EP12_03175 PF09456 RcsC Alpha-Beta-Loop (ABL) EP12_03175 PF00072 Response regulator receiver domain EP12_03175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_03175 PF00512 His Kinase A (phospho-acceptor) domain EP12_03180 PF07690 Major Facilitator Superfamily EP12_03195 PF00849 RNA pseudouridylate synthase EP12_03220 PF10414 Sirohaem synthase dimerisation region EP12_03220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EP12_03225 PF00270 DEAD/DEAH box helicase EP12_03225 PF00271 Helicase conserved C-terminal domain EP12_03225 PF12343 Cold shock protein DEAD box A EP12_03225 PF03880 DbpA RNA binding domain EP12_03245 PF02321 Outer membrane efflux protein EP12_03250 PF00293 NUDIX domain EP12_03255 PF06853 Protein of unknown function (DUF1249) EP12_03265 PF05728 Uncharacterised protein family (UPF0227) EP12_03275 PF00563 EAL domain EP12_03275 PF03707 Bacterial signalling protein N terminal repeat EP12_03275 PF00990 Diguanylate cyclase, GGDEF domain EP12_03280 PF08446 PAS fold EP12_03280 PF01590 GAF domain EP12_03280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_03280 PF00360 Phytochrome region EP12_03280 PF00512 His Kinase A (phospho-acceptor) domain EP12_03285 PF13419 Haloacid dehalogenase-like hydrolase EP12_03305 PF04055 Radical SAM superfamily EP12_03320 PF00593 TonB dependent receptor EP12_03320 PF07715 TonB-dependent Receptor Plug Domain EP12_03330 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EP12_03335 PF05175 Methyltransferase small domain EP12_03345 PF01722 BolA-like protein EP12_03355 PF08376 Nitrate and nitrite sensing EP12_03355 PF03861 ANTAR domain EP12_03365 PF00916 Sulfate permease family EP12_03365 PF01740 STAS domain EP12_03370 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP12_03370 PF04324 BFD-like [2Fe-2S] binding domain EP12_03370 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP12_03370 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP12_03370 PF18267 Rubredoxin NAD+ reductase C-terminal domain EP12_03375 PF13806 Rieske-like [2Fe-2S] domain EP12_03380 PF04324 BFD-like [2Fe-2S] binding domain EP12_03380 PF00384 Molybdopterin oxidoreductase EP12_03380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EP12_03380 PF01568 Molydopterin dinucleotide binding domain EP12_03385 PF10414 Sirohaem synthase dimerisation region EP12_03385 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EP12_03385 PF14824 Sirohaem biosynthesis protein central EP12_03390 PF00591 Glycosyl transferase family, a/b domain EP12_03390 PF02885 Glycosyl transferase family, helical bundle domain EP12_03405 PF00005 ABC transporter EP12_03410 PF00528 Binding-protein-dependent transport system inner membrane component EP12_03415 PF00005 ABC transporter EP12_03425 PF12804 MobA-like NTP transferase domain EP12_03435 PF01323 DSBA-like thioredoxin domain EP12_03440 PF01636 Phosphotransferase enzyme family EP12_03445 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase EP12_03445 PF12801 4Fe-4S binding domain EP12_03445 PF13746 4Fe-4S dicluster domain EP12_03475 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EP12_03475 PF13378 Enolase C-terminal domain-like EP12_03480 PF00596 Class II Aldolase and Adducin N-terminal domain EP12_03490 PF13533 Biotin-lipoyl like EP12_03495 PF00873 AcrB/AcrD/AcrF family EP12_03525 PF00672 HAMP domain EP12_03525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP12_03525 PF02743 Cache domain EP12_03530 PF04545 Sigma-70, region 4 EP12_03530 PF04539 Sigma-70 region 3 EP12_03530 PF00140 Sigma-70 factor, region 1.2 EP12_03530 PF03979 Sigma-70 factor, region 1.1 EP12_03530 PF04546 Sigma-70, non-essential region EP12_03530 PF04542 Sigma-70 region 2 EP12_03535 PF01807 CHC2 zinc finger EP12_03535 PF08278 DNA primase DnaG DnaB-binding EP12_03535 PF08275 DNA primase catalytic core, N-terminal domain EP12_03535 PF10410 DnaB-helicase binding domain of primase EP12_03545 PF01165 Ribosomal protein S21 EP12_03550 PF00814 Glycoprotease family EP12_03555 PF02660 Glycerol-3-phosphate acyltransferase EP12_03570 PF02673 Bacitracin resistance protein BacA EP12_03575 PF01230 HIT domain EP12_03590 PF03594 Benzoate membrane transport protein EP12_03595 PF01381 Helix-turn-helix EP12_03595 PF07883 Cupin domain EP12_03605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_03605 PF00512 His Kinase A (phospho-acceptor) domain EP12_03605 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP12_03610 PF00486 Transcriptional regulatory protein, C terminal EP12_03610 PF00072 Response regulator receiver domain EP12_03615 PF00989 PAS fold EP12_03615 PF11808 Phosphate regulon sensor protein PhoR EP12_03615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_03615 PF00512 His Kinase A (phospho-acceptor) domain EP12_03620 PF12849 PBP superfamily domain EP12_03645 PF01618 MotA/TolQ/ExbB proton channel family EP12_03650 PF01618 MotA/TolQ/ExbB proton channel family EP12_03655 PF02472 Biopolymer transport protein ExbD/TolR EP12_03670 PF09411 Lipid A 3-O-deacylase (PagL) EP12_03680 PF00072 Response regulator receiver domain EP12_03680 PF01627 Hpt domain EP12_03680 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP12_03680 PF00672 HAMP domain EP12_03680 PF00512 His Kinase A (phospho-acceptor) domain EP12_03680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_03685 PF00501 AMP-binding enzyme EP12_03685 PF13193 AMP-binding enzyme C-terminal domain EP12_03700 PF06434 Aconitate hydratase 2 N-terminus EP12_03700 PF00330 Aconitase family (aconitate hydratase) EP12_03700 PF11791 Aconitate B N-terminal domain EP12_03715 PF06434 Aconitate hydratase 2 N-terminus EP12_03715 PF11791 Aconitate B N-terminal domain EP12_03715 PF00330 Aconitase family (aconitate hydratase) EP12_03725 PF01842 ACT domain EP12_03725 PF00696 Amino acid kinase family EP12_03730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP12_03730 PF00672 HAMP domain EP12_03735 PF00149 Calcineurin-like phosphoesterase EP12_03740 PF04379 ApaG domain EP12_03745 PF00398 Ribosomal RNA adenine dimethylase EP12_03750 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EP12_03755 PF00639 PPIC-type PPIASE domain EP12_03755 PF09312 SurA N-terminal domain EP12_03760 PF03968 OstA-like protein EP12_03760 PF04453 LPS transport system D EP12_03770 PF05099 Tellurite resistance protein TerB EP12_03770 PF00226 DnaJ domain EP12_03775 PF02899 Phage integrase, N-terminal SAM-like domain EP12_03775 PF00589 Phage integrase family EP12_03780 PF10411 Disulfide bond isomerase protein N-terminus EP12_03780 PF13098 Thioredoxin-like domain EP12_03800 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ EP12_03805 PF01648 4'-phosphopantetheinyl transferase superfamily EP12_03815 PF04607 Region found in RelA / SpoT proteins EP12_03815 PF02824 TGS domain EP12_03815 PF13291 ACT domain EP12_03820 PF03819 MazG nucleotide pyrophosphohydrolase domain EP12_03830 PF00572 Ribosomal protein L13 EP12_03835 PF00380 Ribosomal protein S9/S16 EP12_03840 PF04542 Sigma-70 region 2 EP12_03840 PF08281 Sigma-70, region 4 EP12_03850 PF00593 TonB dependent receptor EP12_03850 PF07715 TonB-dependent Receptor Plug Domain EP12_03860 PF00355 Rieske [2Fe-2S] domain EP12_03860 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal EP12_03865 PF00033 Cytochrome b/b6/petB EP12_03865 PF00032 Cytochrome b(C-terminal)/b6/petD EP12_03870 PF02167 Cytochrome C1 family EP12_03875 PF00043 Glutathione S-transferase, C-terminal domain EP12_03875 PF02798 Glutathione S-transferase, N-terminal domain EP12_03880 PF04386 Stringent starvation protein B EP12_03895 PF00072 Response regulator receiver domain EP12_03895 PF00486 Transcriptional regulatory protein, C terminal EP12_03900 PF00571 CBS domain EP12_03900 PF01769 Divalent cation transporter EP12_03900 PF03448 MgtE intracellular N domain EP12_03905 PF00381 PTS HPr component phosphorylation site EP12_03910 PF03668 P-loop ATPase protein family EP12_03915 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EP12_03920 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EP12_03925 PF04552 Sigma-54, DNA binding domain EP12_03925 PF04963 Sigma-54 factor, core binding domain EP12_03925 PF00309 Sigma-54 factor, Activator interacting domain (AID) EP12_03930 PF12399 Branched-chain amino acid ATP-binding cassette transporter EP12_03930 PF00005 ABC transporter EP12_03950 PF01380 SIS domain EP12_03950 PF00571 CBS domain EP12_03955 PF01699 Sodium/calcium exchanger protein EP12_03960 PF00005 ABC transporter EP12_03965 PF02405 Permease MlaE EP12_03970 PF02470 MlaD protein EP12_03975 PF05494 MlaC protein EP12_03985 PF01722 BolA-like protein EP12_03990 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EP12_03995 PF13180 PDZ domain EP12_04005 PF00595 PDZ domain EP12_04005 PF13180 PDZ domain EP12_04020 PF03969 AFG1-like ATPase EP12_04025 PF01709 Transcriptional regulator EP12_04075 PF02355 Protein export membrane protein EP12_04075 PF07549 SecD/SecF GG Motif EP12_04080 PF03471 Transporter associated domain EP12_04080 PF02080 TrkA-C domain EP12_04080 PF00999 Sodium/hydrogen exchanger family EP12_04085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_04085 PF00512 His Kinase A (phospho-acceptor) domain EP12_04085 PF09308 LuxQ, periplasmic EP12_04085 PF00072 Response regulator receiver domain EP12_04100 PF00465 Iron-containing alcohol dehydrogenase EP12_04120 PF02772 S-adenosylmethionine synthetase, central domain EP12_04120 PF02773 S-adenosylmethionine synthetase, C-terminal domain EP12_04120 PF00438 S-adenosylmethionine synthetase, N-terminal domain EP12_04125 PF00456 Transketolase, thiamine diphosphate binding domain EP12_04125 PF02780 Transketolase, C-terminal domain EP12_04125 PF02779 Transketolase, pyrimidine binding domain EP12_04130 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EP12_04130 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP12_04135 PF00162 Phosphoglycerate kinase EP12_04140 PF00274 Fructose-bisphosphate aldolase class-I EP12_04145 PF02541 Ppx/GppA phosphatase family EP12_04150 PF13090 Polyphosphate kinase C-terminal domain 2 EP12_04150 PF17941 Polyphosphate kinase C-terminal domain 1 EP12_04150 PF02503 Polyphosphate kinase middle domain EP12_04150 PF13089 Polyphosphate kinase N-terminal domain EP12_04160 PF00528 Binding-protein-dependent transport system inner membrane component EP12_04165 PF00528 Binding-protein-dependent transport system inner membrane component EP12_04170 PF00005 ABC transporter EP12_04175 PF01895 PhoU domain EP12_04180 PF01384 Phosphate transporter family EP12_04185 PF00582 Universal stress protein family EP12_04190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_04190 PF03466 LysR substrate binding domain EP12_04200 PF03006 Haemolysin-III related EP12_04205 PF01047 MarR family EP12_04210 PF02566 OsmC-like protein EP12_04220 PF01205 Uncharacterized protein family UPF0029 EP12_04220 PF09186 Domain of unknown function (DUF1949) EP12_04225 PF13426 PAS domain EP12_04225 PF08447 PAS fold EP12_04225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP12_04235 PF13476 AAA domain EP12_04240 PF03079 ARD/ARD' family EP12_04250 PF12146 Serine aminopeptidase, S33 EP12_04255 PF06719 AraC-type transcriptional regulator N-terminus EP12_04255 PF12833 Helix-turn-helix domain EP12_04260 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system EP12_04275 PF00043 Glutathione S-transferase, C-terminal domain EP12_04275 PF02798 Glutathione S-transferase, N-terminal domain EP12_04320 PF01979 Amidohydrolase family EP12_04370 PF00581 Rhodanese-like domain EP12_04375 PF08534 Redoxin EP12_04430 PF04172 LrgB-like family EP12_04435 PF00072 Response regulator receiver domain EP12_04460 PF06969 HemN C-terminal domain EP12_04460 PF04055 Radical SAM superfamily EP12_04465 PF01725 Ham1 family EP12_04470 PF00271 Helicase conserved C-terminal domain EP12_04470 PF00270 DEAD/DEAH box helicase EP12_04475 PF12627 Probable RNA and SrmB- binding site of polymerase A EP12_04475 PF01743 Poly A polymerase head domain EP12_04480 PF13401 AAA domain EP12_04480 PF01471 Putative peptidoglycan binding domain EP12_04495 PF00694 Aconitase C-terminal domain EP12_04500 PF00330 Aconitase family (aconitate hydratase) EP12_04505 PF00180 Isocitrate/isopropylmalate dehydrogenase EP12_04510 PF08502 LeuA allosteric (dimerisation) domain EP12_04510 PF00682 HMGL-like EP12_04525 PF03952 Enolase, N-terminal domain EP12_04525 PF00113 Enolase, C-terminal TIM barrel domain EP12_04530 PF06418 CTP synthase N-terminus EP12_04530 PF00117 Glutamine amidotransferase class-I EP12_04540 PF02464 Competence-damaged protein EP12_04545 PF00154 recA bacterial DNA recombination protein EP12_04560 PF00005 ABC transporter EP12_04565 PF12679 ABC-2 family transporter protein EP12_04580 PF00005 ABC transporter EP12_04585 PF03379 CcmB protein EP12_04590 PF01578 Cytochrome C assembly protein EP12_04595 PF04995 Heme exporter protein D (CcmD) EP12_04600 PF03100 CcmE EP12_04605 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal EP12_04605 PF01578 Cytochrome C assembly protein EP12_04610 PF08534 Redoxin EP12_04615 PF03918 Cytochrome C biogenesis protein EP12_04630 PF16363 GDP-mannose 4,6 dehydratase EP12_04650 PF00005 ABC transporter EP12_04660 PF02563 Polysaccharide biosynthesis/export protein EP12_04660 PF10531 SLBB domain EP12_04670 PF00953 Glycosyl transferase family 4 EP12_04675 PF00535 Glycosyl transferase family 2 EP12_04685 PF00483 Nucleotidyl transferase EP12_04690 PF10531 SLBB domain EP12_04695 PF00180 Isocitrate/isopropylmalate dehydrogenase EP12_04695 PF18324 Hypothetical protein TT1725 EP12_04710 PF11892 Domain of unknown function (DUF3412) EP12_04710 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases EP12_04710 PF03641 Possible lysine decarboxylase EP12_04715 PF00072 Response regulator receiver domain EP12_04715 PF00990 Diguanylate cyclase, GGDEF domain EP12_04720 PF14489 QueF-like protein EP12_04720 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term EP12_04725 PF07348 Syd protein (SUKH-2) EP12_04745 PF03527 RHS protein EP12_04745 PF05593 RHS Repeat EP12_04765 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system EP12_04770 PF00593 TonB dependent receptor EP12_04770 PF07715 TonB-dependent Receptor Plug Domain EP12_04805 PF00849 RNA pseudouridylate synthase EP12_04810 PF00258 Flavodoxin EP12_04815 PF14602 Hexapeptide repeat of succinyl-transferase EP12_04815 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal EP12_04815 PF00132 Bacterial transferase hexapeptide (six repeats) EP12_04820 PF01909 Nucleotidyltransferase domain EP12_04820 PF01966 HD domain EP12_04820 PF08335 GlnD PII-uridylyltransferase EP12_04820 PF01842 ACT domain EP12_04825 PF00557 Metallopeptidase family M24 EP12_04830 PF00318 Ribosomal protein S2 EP12_04835 PF00889 Elongation factor TS EP12_04840 PF00696 Amino acid kinase family EP12_04845 PF01765 Ribosome recycling factor EP12_04850 PF01255 Putative undecaprenyl diphosphate synthase EP12_04870 PF07244 Surface antigen variable number repeat EP12_04870 PF01103 Surface antigen EP12_04875 PF03938 Outer membrane protein (OmpH-like) EP12_04880 PF07977 FabA-like domain EP12_04885 PF00132 Bacterial transferase hexapeptide (six repeats) EP12_04885 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 EP12_04890 PF02684 Lipid-A-disaccharide synthetase EP12_04895 PF01351 Ribonuclease HII EP12_04905 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EP12_04915 PF00990 Diguanylate cyclase, GGDEF domain EP12_04915 PF00563 EAL domain EP12_04915 PF03707 Bacterial signalling protein N terminal repeat EP12_04920 PF02254 TrkA-N domain EP12_04920 PF02080 TrkA-C domain EP12_04920 PF00999 Sodium/hydrogen exchanger family EP12_04930 PF14437 MafB19-like deaminase EP12_04935 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP12_04935 PF01464 Transglycosylase SLT domain EP12_04940 PF02769 AIR synthase related protein, C-terminal domain EP12_04940 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal EP12_04940 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EP12_04950 PF01713 Smr domain EP12_04985 PF01584 CheW-like domain EP12_04985 PF00072 Response regulator receiver domain EP12_04990 PF03705 CheR methyltransferase, all-alpha domain EP12_04990 PF01739 CheR methyltransferase, SAM binding domain EP12_04995 PF00460 Flagella basal body rod protein EP12_05000 PF00460 Flagella basal body rod protein EP12_05000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EP12_05010 PF07559 Flagellar basal body protein FlaE EP12_05010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EP12_05010 PF00460 Flagella basal body rod protein EP12_05015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EP12_05015 PF00460 Flagella basal body rod protein EP12_05020 PF00460 Flagella basal body rod protein EP12_05020 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EP12_05025 PF02107 Flagellar L-ring protein EP12_05035 PF10135 Rod binding protein EP12_05035 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EP12_05055 PF07196 Flagellin hook IN motif EP12_05055 PF00669 Bacterial flagellin N-terminal helical region EP12_05055 PF00700 Bacterial flagellin C-terminal helical region EP12_05060 PF07196 Flagellin hook IN motif EP12_05060 PF00669 Bacterial flagellin N-terminal helical region EP12_05060 PF00700 Bacterial flagellin C-terminal helical region EP12_05075 PF03646 FlaG protein EP12_05080 PF07196 Flagellin hook IN motif EP12_05080 PF07195 Flagellar hook-associated protein 2 C-terminus EP12_05080 PF02465 Flagellar hook-associated protein 2 N-terminus EP12_05085 PF02561 Flagellar protein FliS EP12_05095 PF02719 Polysaccharide biosynthesis protein EP12_05100 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EP12_05105 PF02348 Cytidylyltransferase EP12_05110 PF03102 NeuB family EP12_05110 PF08666 SAF domain EP12_05170 PF02350 UDP-N-acetylglucosamine 2-epimerase EP12_05175 PF17102 Stealth protein CR3, conserved region 3 EP12_05175 PF17101 Stealth protein CR1, conserved region 1 EP12_05175 PF11380 Stealth protein CR2, conserved region 2 EP12_05185 PF00483 Nucleotidyl transferase EP12_05195 PF00266 Aminotransferase class-V EP12_05205 PF04991 LicD family EP12_05210 PF00550 Phosphopantetheine attachment site EP12_05245 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EP12_05245 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EP12_05250 PF00551 Formyl transferase EP12_05250 PF02911 Formyl transferase, C-terminal domain EP12_05255 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EP12_05260 PF00700 Bacterial flagellin C-terminal helical region EP12_05260 PF12445 Flagellin protein EP12_05260 PF00669 Bacterial flagellin N-terminal helical region EP12_05265 PF00158 Sigma-54 interaction domain EP12_05265 PF00072 Response regulator receiver domain EP12_05265 PF02954 Bacterial regulatory protein, Fis family EP12_05270 PF00989 PAS fold EP12_05270 PF00512 His Kinase A (phospho-acceptor) domain EP12_05270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_05275 PF02954 Bacterial regulatory protein, Fis family EP12_05275 PF00072 Response regulator receiver domain EP12_05275 PF00158 Sigma-54 interaction domain EP12_05280 PF02049 Flagellar hook-basal body complex protein FliE EP12_05285 PF01514 Secretory protein of YscJ/FliF family EP12_05285 PF08345 Flagellar M-ring protein C-terminal EP12_05290 PF14841 FliG middle domain EP12_05290 PF14842 FliG N-terminal domain EP12_05290 PF01706 FliG C-terminal domain EP12_05300 PF18269 T3SS EscN ATPase C-terminal domain EP12_05300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP12_05320 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EP12_05320 PF02154 Flagellar motor switch protein FliM EP12_05325 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EP12_05330 PF04347 Flagellar biosynthesis protein, FliO EP12_05335 PF00813 FliP family EP12_05345 PF01311 Bacterial export proteins, family 1 EP12_05350 PF01312 FlhB HrpN YscU SpaS Family EP12_05355 PF00771 FHIPEP family EP12_05360 PF00448 SRP54-type protein, GTPase domain EP12_05365 PF10609 NUBPL iron-transfer P-loop NTPase EP12_05370 PF04542 Sigma-70 region 2 EP12_05370 PF04539 Sigma-70 region 3 EP12_05370 PF04545 Sigma-70, region 4 EP12_05375 PF00072 Response regulator receiver domain EP12_05380 PF04344 Chemotaxis phosphatase, CheZ EP12_05385 PF01627 Hpt domain EP12_05385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_05385 PF02895 Signal transducing histidine kinase, homodimeric domain EP12_05385 PF01584 CheW-like domain EP12_05385 PF07194 P2 response regulator binding domain EP12_05395 PF13614 AAA domain EP12_05405 PF01584 CheW-like domain EP12_05415 PF04204 Homoserine O-succinyltransferase EP12_05430 PF02743 Cache domain EP12_05430 PF00672 HAMP domain EP12_05430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP12_05435 PF06865 Pyrimidine/purine nucleoside phosphorylase EP12_05440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_05440 PF03466 LysR substrate binding domain EP12_05445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_05445 PF03466 LysR substrate binding domain EP12_05450 PF00484 Carbonic anhydrase EP12_05460 PF01431 Peptidase family M13 EP12_05460 PF05649 Peptidase family M13 EP12_05470 PF02631 RecX family EP12_05475 PF01411 tRNA synthetases class II (A) EP12_05475 PF02272 DHHA1 domain EP12_05475 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EP12_05480 PF02599 Global regulator protein family EP12_05505 PF00364 Biotin-requiring enzyme EP12_05505 PF00682 HMGL-like EP12_05505 PF02436 Conserved carboxylase domain EP12_05510 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit EP12_05520 PF00005 ABC transporter EP12_05520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EP12_05525 PF12911 N-terminal TM domain of oligopeptide transport permease C EP12_05525 PF00528 Binding-protein-dependent transport system inner membrane component EP12_05530 PF00528 Binding-protein-dependent transport system inner membrane component EP12_05535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EP12_05540 PF00158 Sigma-54 interaction domain EP12_05540 PF02954 Bacterial regulatory protein, Fis family EP12_05545 PF04012 PspA/IM30 family EP12_05550 PF06667 Phage shock protein B EP12_05560 PF00351 Biopterin-dependent aromatic amino acid hydroxylase EP12_05575 PF14497 Glutathione S-transferase, C-terminal domain EP12_05575 PF02798 Glutathione S-transferase, N-terminal domain EP12_05580 PF01037 Lrp/AsnC ligand binding domain EP12_05585 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EP12_05585 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EP12_05595 PF00593 TonB dependent receptor EP12_05620 PF01618 MotA/TolQ/ExbB proton channel family EP12_05625 PF01618 MotA/TolQ/ExbB proton channel family EP12_05635 PF03544 Gram-negative bacterial TonB protein C-terminal EP12_05650 PF05127 Helicase EP12_05650 PF13718 GNAT acetyltransferase 2 EP12_05675 PF01636 Phosphotransferase enzyme family EP12_05690 PF00583 Acetyltransferase (GNAT) family EP12_05715 PF00248 Aldo/keto reductase family EP12_05720 PF00990 Diguanylate cyclase, GGDEF domain EP12_05755 PF01156 Inosine-uridine preferring nucleoside hydrolase EP12_05760 PF01979 Amidohydrolase family EP12_05765 PF00291 Pyridoxal-phosphate dependent enzyme EP12_05785 PF00111 2Fe-2S iron-sulfur cluster binding domain EP12_05785 PF00175 Oxidoreductase NAD-binding domain EP12_05785 PF00970 Oxidoreductase FAD-binding domain EP12_05795 PF02371 Transposase IS116/IS110/IS902 family EP12_05795 PF01548 Transposase EP12_05850 PF00472 RF-1 domain EP12_05850 PF03462 PCRF domain EP12_05855 PF00472 RF-1 domain EP12_05855 PF03462 PCRF domain EP12_05885 PF04262 Glutamate-cysteine ligase EP12_05900 PF00005 ABC transporter EP12_05915 PF00158 Sigma-54 interaction domain EP12_05915 PF00072 Response regulator receiver domain EP12_05915 PF02954 Bacterial regulatory protein, Fis family EP12_05930 PF01713 Smr domain EP12_05935 PF05175 Methyltransferase small domain EP12_05955 PF04293 SpoVR like protein EP12_05975 PF00462 Glutaredoxin EP12_06000 PF04324 BFD-like [2Fe-2S] binding domain EP12_06005 PF00929 Exonuclease EP12_06015 PF03009 Glycerophosphoryl diester phosphodiesterase family EP12_06020 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP12_06025 PF00313 'Cold-shock' DNA-binding domain EP12_06035 PF17151 Periplasmic sensor domain EP12_06035 PF00990 Diguanylate cyclase, GGDEF domain EP12_06040 PF18500 CadC C-terminal domain 1 EP12_06040 PF00486 Transcriptional regulatory protein, C terminal EP12_06125 PF00106 short chain dehydrogenase EP12_06135 PF02508 Rnf-Nqr subunit, membrane protein EP12_06140 PF04205 FMN-binding domain EP12_06145 PF03116 NQR2, RnfD, RnfE family EP12_06155 PF04060 Putative Fe-S cluster EP12_06160 PF02508 Rnf-Nqr subunit, membrane protein EP12_06175 PF01554 MatE EP12_06180 PF04851 Type III restriction enzyme, res subunit EP12_06180 PF02151 UvrB/uvrC motif EP12_06180 PF12344 Ultra-violet resistance protein B EP12_06180 PF17757 UvrB interaction domain EP12_06180 PF00271 Helicase conserved C-terminal domain EP12_06200 PF06508 Queuosine biosynthesis protein QueC EP12_06205 PF04055 Radical SAM superfamily EP12_06215 PF00733 Asparagine synthase EP12_06215 PF13537 Glutamine amidotransferase domain EP12_06240 PF03600 Citrate transporter EP12_06240 PF02080 TrkA-C domain EP12_06250 PF00459 Inositol monophosphatase family EP12_06260 PF01507 Phosphoadenosine phosphosulfate reductase family EP12_06265 PF00474 Sodium:solute symporter family EP12_06280 PF08281 Sigma-70, region 4 EP12_06280 PF04542 Sigma-70 region 2 EP12_06295 PF07584 Aerotolerance regulator N-terminal EP12_06295 PF00092 von Willebrand factor type A domain EP12_06300 PF00092 von Willebrand factor type A domain EP12_06310 PF01882 Protein of unknown function DUF58 EP12_06315 PF17863 AAA lid domain EP12_06315 PF07726 ATPase family associated with various cellular activities (AAA) EP12_06320 PF00108 Thiolase, N-terminal domain EP12_06320 PF02803 Thiolase, C-terminal domain EP12_06325 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP12_06325 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP12_06325 PF00378 Enoyl-CoA hydratase/isomerase EP12_06350 PF05193 Peptidase M16 inactive domain EP12_06350 PF00675 Insulinase (Peptidase family M16) EP12_06355 PF00300 Histidine phosphatase superfamily (branch 1) EP12_06365 PF00571 CBS domain EP12_06365 PF01595 Cyclin M transmembrane N-terminal domain EP12_06365 PF03471 Transporter associated domain EP12_06370 PF01578 Cytochrome C assembly protein EP12_06380 PF02978 Signal peptide binding domain EP12_06380 PF02881 SRP54-type protein, helical bundle domain EP12_06380 PF00448 SRP54-type protein, GTPase domain EP12_06420 PF00873 AcrB/AcrD/AcrF family EP12_06425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP12_06430 PF00005 ABC transporter EP12_06430 PF00664 ABC transporter transmembrane region EP12_06435 PF01053 Cys/Met metabolism PLP-dependent enzyme EP12_06450 PF00886 Ribosomal protein S16 EP12_06455 PF05239 PRC-barrel domain EP12_06455 PF01782 RimM N-terminal domain EP12_06460 PF01746 tRNA (Guanine-1)-methyltransferase EP12_06465 PF01245 Ribosomal protein L19 EP12_06470 PF03458 UPF0126 domain EP12_06475 PF00378 Enoyl-CoA hydratase/isomerase EP12_06480 PF00793 DAHP synthetase I family EP12_06485 PF01817 Chorismate mutase type II EP12_06485 PF02153 Prephenate dehydrogenase EP12_06490 PF01817 Chorismate mutase type II EP12_06490 PF00800 Prephenate dehydratase EP12_06500 PF00072 Response regulator receiver domain EP12_06505 PF01253 Translation initiation factor SUI1 EP12_06535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_06535 PF00512 His Kinase A (phospho-acceptor) domain EP12_06545 PF00072 Response regulator receiver domain EP12_06545 PF00158 Sigma-54 interaction domain EP12_06550 PF01904 Protein of unknown function DUF72 EP12_06555 PF02938 GAD domain EP12_06555 PF00152 tRNA synthetases class II (D, K and N) EP12_06555 PF01336 OB-fold nucleic acid binding domain EP12_06560 PF00293 NUDIX domain EP12_06575 PF05491 RuvB C-terminal winged helix domain EP12_06575 PF05496 Holliday junction DNA helicase RuvB P-loop domain EP12_06575 PF17864 RuvB AAA lid domain EP12_06580 PF03061 Thioesterase superfamily EP12_06585 PF01618 MotA/TolQ/ExbB proton channel family EP12_06590 PF02472 Biopolymer transport protein ExbD/TolR EP12_06605 PF00691 OmpA family EP12_06610 PF13174 Tetratricopeptide repeat EP12_06610 PF16331 TolA binding protein trimerisation EP12_06630 PF02445 Quinolinate synthetase A protein EP12_06730 PF07030 Protein of unknown function (DUF1320) EP12_06740 PF10124 Mu-like prophage major head subunit gpT EP12_06775 PF06074 Protein of unknown function (DUF935) EP12_06780 PF03237 Terminase-like family EP12_06785 PF11985 Protein of unknown function (DUF3486) EP12_06955 PF13419 Haloacid dehalogenase-like hydrolase EP12_06965 PF05193 Peptidase M16 inactive domain EP12_06965 PF00675 Insulinase (Peptidase family M16) EP12_06970 PF09308 LuxQ, periplasmic EP12_06970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_06970 PF00512 His Kinase A (phospho-acceptor) domain EP12_06970 PF00072 Response regulator receiver domain EP12_06980 PF02774 Semialdehyde dehydrogenase, dimerisation domain EP12_06980 PF01118 Semialdehyde dehydrogenase, NAD binding domain EP12_06990 PF00106 short chain dehydrogenase EP12_06995 PF00199 Catalase EP12_06995 PF18011 C-terminal domain found in long catalases EP12_06995 PF06628 Catalase-related immune-responsive EP12_07000 PF01292 Prokaryotic cytochrome b561 EP12_07005 PF03466 LysR substrate binding domain EP12_07005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_07010 PF00698 Acyl transferase domain EP12_07010 PF00109 Beta-ketoacyl synthase, N-terminal domain EP12_07010 PF08240 Alcohol dehydrogenase GroES-like domain EP12_07010 PF16197 Ketoacyl-synthetase C-terminal extension EP12_07010 PF02801 Beta-ketoacyl synthase, C-terminal domain EP12_07010 PF08659 KR domain EP12_07010 PF00550 Phosphopantetheine attachment site EP12_07010 PF14765 Polyketide synthase dehydratase EP12_07035 PF00873 AcrB/AcrD/AcrF family EP12_07040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP12_07045 PF03707 Bacterial signalling protein N terminal repeat EP12_07045 PF00990 Diguanylate cyclase, GGDEF domain EP12_07045 PF00563 EAL domain EP12_07055 PF02470 MlaD protein EP12_07060 PF04403 Paraquat-inducible protein A EP12_07085 PF01381 Helix-turn-helix EP12_07100 PF00144 Beta-lactamase EP12_07105 PF00152 tRNA synthetases class II (D, K and N) EP12_07105 PF01336 OB-fold nucleic acid binding domain EP12_07115 PF01699 Sodium/calcium exchanger protein EP12_07120 PF18030 RimK PreATP-grasp domain EP12_07120 PF08443 RimK-like ATP-grasp domain EP12_07145 PF06968 Biotin and Thiamin Synthesis associated domain EP12_07145 PF04055 Radical SAM superfamily EP12_07150 PF00155 Aminotransferase class I and II EP12_07165 PF03575 Peptidase family S51 EP12_07170 PF01451 Low molecular weight phosphotyrosine protein phosphatase EP12_07175 PF01474 Class-II DAHP synthetase family EP12_07185 PF00005 ABC transporter EP12_07185 PF13732 Domain of unknown function (DUF4162) EP12_07200 PF00072 Response regulator receiver domain EP12_07200 PF04397 LytTr DNA-binding domain EP12_07210 PF00664 ABC transporter transmembrane region EP12_07210 PF00005 ABC transporter EP12_07215 PF06463 Molybdenum Cofactor Synthesis C EP12_07215 PF04055 Radical SAM superfamily EP12_07280 PF01207 Dihydrouridine synthase (Dus) EP12_07285 PF01979 Amidohydrolase family EP12_07305 PF13472 GDSL-like Lipase/Acylhydrolase family EP12_07310 PF00005 ABC transporter EP12_07320 PF08338 Domain of unknown function (DUF1731) EP12_07320 PF01370 NAD dependent epimerase/dehydratase family EP12_07325 PF02152 Dihydroneopterin aldolase EP12_07330 PF01594 AI-2E family transporter EP12_07335 PF08918 PhoQ Sensor EP12_07335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_07340 PF00072 Response regulator receiver domain EP12_07340 PF00486 Transcriptional regulatory protein, C terminal EP12_07355 PF03795 YCII-related domain EP12_07370 PF00218 Indole-3-glycerol phosphate synthase EP12_07370 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase EP12_07380 PF00117 Glutamine amidotransferase class-I EP12_07385 PF04715 Anthranilate synthase component I, N terminal region EP12_07385 PF00425 chorismate binding enzyme EP12_07390 PF02811 PHP domain EP12_07395 PF01300 Telomere recombination EP12_07400 PF02616 Segregation and condensation protein ScpA EP12_07405 PF04079 Segregation and condensation complex subunit ScpB EP12_07410 PF01479 S4 domain EP12_07410 PF00849 RNA pseudouridylate synthase EP12_07415 PF00248 Aldo/keto reductase family EP12_07420 PF14602 Hexapeptide repeat of succinyl-transferase EP12_07420 PF12464 Maltose acetyltransferase EP12_07430 PF03960 ArsC family EP12_07435 PF04286 Protein of unknown function (DUF445) EP12_07440 PF05724 Thiopurine S-methyltransferase (TPMT) EP12_07445 PF04355 SmpA / OmlA family EP12_07460 PF00210 Ferritin-like domain EP12_07490 PF00593 TonB dependent receptor EP12_07490 PF07715 TonB-dependent Receptor Plug Domain EP12_07495 PF00196 Bacterial regulatory proteins, luxR family EP12_07495 PF00072 Response regulator receiver domain EP12_07510 PF01025 GrpE EP12_07515 PF00012 Hsp70 protein EP12_07520 PF00226 DnaJ domain EP12_07520 PF01556 DnaJ C terminal domain EP12_07520 PF00684 DnaJ central domain EP12_07525 PF01322 Cytochrome C' EP12_07530 PF00563 EAL domain EP12_07530 PF00990 Diguanylate cyclase, GGDEF domain EP12_07530 PF03707 Bacterial signalling protein N terminal repeat EP12_07540 PF05173 Dihydrodipicolinate reductase, C-terminus EP12_07540 PF01113 Dihydrodipicolinate reductase, N-terminus EP12_07545 PF00117 Glutamine amidotransferase class-I EP12_07545 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EP12_07550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP12_07550 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EP12_07550 PF02142 MGS-like domain EP12_07555 PF03449 Transcription elongation factor, N-terminal EP12_07555 PF01272 Transcription elongation factor, GreA/GreB, C-term EP12_07560 PF00672 HAMP domain EP12_07560 PF12729 Four helix bundle sensory module for signal transduction EP12_07560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP12_07570 PF00011 Hsp20/alpha crystallin family EP12_07575 PF00871 Acetokinase family EP12_07585 PF00795 Carbon-nitrogen hydrolase EP12_07590 PF00571 CBS domain EP12_07590 PF03471 Transporter associated domain EP12_07595 PF02397 Bacterial sugar transferase EP12_07600 PF01370 NAD dependent epimerase/dehydratase family EP12_07610 PF02130 Uncharacterized protein family UPF0054 EP12_07615 PF02562 PhoH-like protein EP12_07620 PF00919 Uncharacterized protein family UPF0004 EP12_07620 PF04055 Radical SAM superfamily EP12_07620 PF01938 TRAM domain EP12_07625 PF01494 FAD binding domain EP12_07655 PF03061 Thioesterase superfamily EP12_07660 PF01613 Flavin reductase like domain EP12_07665 PF01235 Sodium:alanine symporter family EP12_07730 PF14693 Ribosomal protein TL5, C-terminal domain EP12_07730 PF01386 Ribosomal L25p family EP12_07760 PF00288 GHMP kinases N terminal domain EP12_07760 PF08544 GHMP kinases C terminal EP12_07765 PF03550 Outer membrane lipoprotein LolB EP12_07775 PF00472 RF-1 domain EP12_07775 PF03462 PCRF domain EP12_07780 PF13847 Methyltransferase domain EP12_07780 PF17827 PrmC N-terminal domain EP12_07785 PF11849 Domain of unknown function (DUF3369) EP12_07790 PF04247 Invasion gene expression up-regulator, SirB EP12_07805 PF03466 LysR substrate binding domain EP12_07805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_07815 PF04241 Protein of unknown function (DUF423) EP12_07820 PF01728 FtsJ-like methyltransferase EP12_07820 PF18125 RlmM ferredoxin-like domain EP12_07835 PF02560 Cyanate lyase C-terminal domain EP12_07840 PF00069 Protein kinase domain EP12_07840 PF03793 PASTA domain EP12_07850 PF03925 SeqA protein C-terminal domain EP12_07850 PF17206 SeqA protein N-terminal domain EP12_07855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP12_07855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP12_07855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP12_07855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP12_07860 PF00343 Carbohydrate phosphorylase EP12_07865 PF00563 EAL domain EP12_07865 PF00990 Diguanylate cyclase, GGDEF domain EP12_07865 PF03707 Bacterial signalling protein N terminal repeat EP12_07870 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EP12_07880 PF01906 Putative heavy-metal-binding EP12_07895 PF01546 Peptidase family M20/M25/M40 EP12_07895 PF07687 Peptidase dimerisation domain EP12_07900 PF03960 ArsC family EP12_07920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP12_07925 PF04209 homogentisate 1,2-dioxygenase EP12_08015 PF00091 Tubulin/FtsZ family, GTPase domain EP12_08015 PF12327 FtsZ family, C-terminal domain EP12_08025 PF13426 PAS domain EP12_08025 PF08448 PAS fold EP12_08025 PF05231 MASE1 EP12_08025 PF00563 EAL domain EP12_08025 PF08447 PAS fold EP12_08025 PF00990 Diguanylate cyclase, GGDEF domain EP12_08040 PF00576 HIUase/Transthyretin family EP12_08055 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EP12_08055 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EP12_08060 PF01799 [2Fe-2S] binding domain EP12_08060 PF00111 2Fe-2S iron-sulfur cluster binding domain EP12_08080 PF00860 Permease family EP12_08095 PF03707 Bacterial signalling protein N terminal repeat EP12_08095 PF00990 Diguanylate cyclase, GGDEF domain EP12_08095 PF00563 EAL domain EP12_08105 PF00072 Response regulator receiver domain EP12_08105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_08105 PF00512 His Kinase A (phospho-acceptor) domain EP12_08105 PF09308 LuxQ, periplasmic EP12_08130 PF07715 TonB-dependent Receptor Plug Domain EP12_08130 PF00593 TonB dependent receptor EP12_08150 PF01546 Peptidase family M20/M25/M40 EP12_08150 PF07687 Peptidase dimerisation domain EP12_08155 PF00266 Aminotransferase class-V EP12_08160 PF01925 Sulfite exporter TauE/SafE EP12_08170 PF01425 Amidase EP12_08210 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EP12_08210 PF03129 Anticodon binding domain EP12_08210 PF02824 TGS domain EP12_08210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP12_08215 PF00707 Translation initiation factor IF-3, C-terminal domain EP12_08215 PF05198 Translation initiation factor IF-3, N-terminal domain EP12_08220 PF01632 Ribosomal protein L35 EP12_08225 PF00453 Ribosomal protein L20 EP12_08230 PF01050 Mannose-6-phosphate isomerase EP12_08230 PF00483 Nucleotidyl transferase EP12_08235 PF02397 Bacterial sugar transferase EP12_08245 PF10531 SLBB domain EP12_08245 PF18412 Outer-membrane lipoprotein Wza C-terminal domain EP12_08245 PF02563 Polysaccharide biosynthesis/export protein EP12_08290 PF00534 Glycosyl transferases group 1 EP12_08290 PF13439 Glycosyltransferase Family 4 EP12_08295 PF00535 Glycosyl transferase family 2 EP12_08295 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 EP12_08310 PF01757 Acyltransferase family EP12_08320 PF13439 Glycosyltransferase Family 4 EP12_08320 PF00534 Glycosyl transferases group 1 EP12_08355 PF01409 tRNA synthetases class II core domain (F) EP12_08355 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EP12_08360 PF01588 Putative tRNA binding domain EP12_08360 PF03483 B3/4 domain EP12_08360 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EP12_08360 PF03147 Ferredoxin-fold anticodon binding domain EP12_08360 PF03484 tRNA synthetase B5 domain EP12_08365 PF00216 Bacterial DNA-binding protein EP12_08375 PF04073 Aminoacyl-tRNA editing domain EP12_08390 PF01923 Cobalamin adenosyltransferase EP12_08400 PF17757 UvrB interaction domain EP12_08400 PF00271 Helicase conserved C-terminal domain EP12_08400 PF00270 DEAD/DEAH box helicase EP12_08400 PF02559 CarD-like/TRCF domain EP12_08400 PF03461 TRCF domain EP12_08410 PF12704 MacB-like periplasmic core domain EP12_08410 PF02687 FtsX-like permease family EP12_08415 PF00156 Phosphoribosyl transferase domain EP12_08425 PF03372 Endonuclease/Exonuclease/phosphatase family EP12_08460 PF07690 Major Facilitator Superfamily EP12_08470 PF00483 Nucleotidyl transferase EP12_08485 PF00682 HMGL-like EP12_08490 PF02785 Biotin carboxylase C-terminal domain EP12_08490 PF00289 Biotin carboxylase, N-terminal domain EP12_08490 PF00364 Biotin-requiring enzyme EP12_08490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP12_08500 PF01039 Carboxyl transferase domain EP12_08510 PF13411 MerR HTH family regulatory protein EP12_08515 PF02803 Thiolase, C-terminal domain EP12_08515 PF00108 Thiolase, N-terminal domain EP12_08530 PF00929 Exonuclease EP12_08530 PF08411 Exonuclease C-terminal EP12_08545 PF00149 Calcineurin-like phosphoesterase EP12_08545 PF16656 Purple acid Phosphatase, N-terminal domain EP12_08585 PF10672 S-adenosylmethionine-dependent methyltransferase EP12_08585 PF17785 PUA-like domain EP12_08590 PF00109 Beta-ketoacyl synthase, N-terminal domain EP12_08590 PF00550 Phosphopantetheine attachment site EP12_08590 PF16197 Ketoacyl-synthetase C-terminal extension EP12_08590 PF02801 Beta-ketoacyl synthase, C-terminal domain EP12_08590 PF14765 Polyketide synthase dehydratase EP12_08590 PF08659 KR domain EP12_08590 PF00698 Acyl transferase domain EP12_08590 PF08240 Alcohol dehydrogenase GroES-like domain EP12_08595 PF00075 RNase H EP12_08600 PF00929 Exonuclease EP12_08635 PF00005 ABC transporter EP12_08640 PF12704 MacB-like periplasmic core domain EP12_08640 PF02687 FtsX-like permease family EP12_08655 PF04996 Succinylarginine dihydrolase EP12_08665 PF01751 Toprim domain EP12_08665 PF01131 DNA topoisomerase EP12_08665 PF08272 Topoisomerase I zinc-ribbon-like EP12_08665 PF01396 Topoisomerase DNA binding C4 zinc finger EP12_08670 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) EP12_08675 PF00962 Adenosine/AMP deaminase EP12_08680 PF13673 Acetyltransferase (GNAT) domain EP12_08685 PF13419 Haloacid dehalogenase-like hydrolase EP12_08700 PF01479 S4 domain EP12_08700 PF00849 RNA pseudouridylate synthase EP12_08710 PF02545 Maf-like protein EP12_08715 PF02620 Large ribosomal RNA subunit accumulation protein YceD EP12_08720 PF01783 Ribosomal L32p protein family EP12_08735 PF00698 Acyl transferase domain EP12_08745 PF00550 Phosphopantetheine attachment site EP12_08750 PF00109 Beta-ketoacyl synthase, N-terminal domain EP12_08750 PF02801 Beta-ketoacyl synthase, C-terminal domain EP12_08760 PF00561 alpha/beta hydrolase fold EP12_08775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP12_08775 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP12_08775 PF02770 Acyl-CoA dehydrogenase, middle domain EP12_08775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP12_08785 PF04198 Putative sugar-binding domain EP12_08790 PF13419 Haloacid dehalogenase-like hydrolase EP12_08800 PF08125 Mannitol dehydrogenase C-terminal domain EP12_08800 PF01232 Mannitol dehydrogenase Rossmann domain EP12_08810 PF03466 LysR substrate binding domain EP12_08810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_08825 PF00924 Mechanosensitive ion channel EP12_08830 PF07715 TonB-dependent Receptor Plug Domain EP12_08830 PF00593 TonB dependent receptor EP12_08835 PF01329 Pterin 4 alpha carbinolamine dehydratase EP12_08855 PF00072 Response regulator receiver domain EP12_08855 PF01627 Hpt domain EP12_08855 PF00512 His Kinase A (phospho-acceptor) domain EP12_08855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_08855 PF00672 HAMP domain EP12_08855 PF17149 Periplasmic sensor domain found in signal transduction proteins EP12_08860 PF00072 Response regulator receiver domain EP12_08865 PF17384 RimP C-terminal SH3 domain EP12_08865 PF02576 RimP N-terminal domain EP12_08870 PF13184 NusA-like KH domain EP12_08870 PF08529 NusA N-terminal domain EP12_08870 PF00575 S1 RNA binding domain EP12_08875 PF11987 Translation-initiation factor 2 EP12_08875 PF04760 Translation initiation factor IF-2, N-terminal region EP12_08875 PF08364 Bacterial translation initiation factor IF-2 associated region EP12_08875 PF00009 Elongation factor Tu GTP binding domain EP12_08880 PF02033 Ribosome-binding factor A EP12_08885 PF09157 Pseudouridine synthase II TruB, C-terminal EP12_08885 PF01509 TruB family pseudouridylate synthase (N terminal domain) EP12_08885 PF16198 tRNA pseudouridylate synthase B C-terminal domain EP12_08890 PF00312 Ribosomal protein S15 EP12_08910 PF00795 Carbon-nitrogen hydrolase EP12_08910 PF00583 Acetyltransferase (GNAT) family EP12_08940 PF10417 C-terminal domain of 1-Cys peroxiredoxin EP12_08940 PF00578 AhpC/TSA family EP12_08945 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP12_08945 PF13192 Thioredoxin domain EP12_08950 PF00593 TonB dependent receptor EP12_08950 PF07715 TonB-dependent Receptor Plug Domain EP12_08980 PF08497 Radical SAM N-terminal EP12_08980 PF11842 Domain of unknown function (DUF3362) EP12_08980 PF04055 Radical SAM superfamily EP12_08995 PF00593 TonB dependent receptor EP12_08995 PF07715 TonB-dependent Receptor Plug Domain EP12_09000 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP12_09000 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP12_09010 PF13416 Bacterial extracellular solute-binding protein EP12_09020 PF00005 ABC transporter EP12_09025 PF01066 CDP-alcohol phosphatidyltransferase EP12_09035 PF06055 Exopolysaccharide synthesis, ExoD EP12_09075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP12_09075 PF12729 Four helix bundle sensory module for signal transduction EP12_09075 PF00672 HAMP domain EP12_09080 PF07715 TonB-dependent Receptor Plug Domain EP12_09080 PF00593 TonB dependent receptor EP12_09095 PF00005 ABC transporter EP12_09120 PF01668 SmpB protein EP12_09125 PF03364 Polyketide cyclase / dehydrase and lipid transport EP12_09130 PF03658 RnfH family Ubiquitin EP12_09140 PF02028 BCCT, betaine/carnitine/choline family transporter EP12_09145 PF07715 TonB-dependent Receptor Plug Domain EP12_09145 PF00593 TonB dependent receptor EP12_09150 PF13181 Tetratricopeptide repeat EP12_09155 PF03618 Kinase/pyrophosphorylase EP12_09165 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EP12_09170 PF01799 [2Fe-2S] binding domain EP12_09170 PF00111 2Fe-2S iron-sulfur cluster binding domain EP12_09180 PF02913 FAD linked oxidases, C-terminal domain EP12_09180 PF13183 4Fe-4S dicluster domain EP12_09180 PF01565 FAD binding domain EP12_09190 PF08007 Cupin superfamily protein EP12_09200 PF00206 Lyase EP12_09200 PF08328 Adenylosuccinate lyase C-terminal EP12_09205 PF04356 Protein of unknown function (DUF489) EP12_09215 PF00849 RNA pseudouridylate synthase EP12_09220 PF03971 Monomeric isocitrate dehydrogenase EP12_09225 PF00313 'Cold-shock' DNA-binding domain EP12_09230 PF02617 ATP-dependent Clp protease adaptor protein ClpS EP12_09235 PF07724 AAA domain (Cdc48 subfamily) EP12_09235 PF00004 ATPase family associated with various cellular activities (AAA) EP12_09235 PF17871 AAA lid domain EP12_09235 PF10431 C-terminal, D2-small domain, of ClpB protein EP12_09235 PF02861 Clp amino terminal domain, pathogenicity island component EP12_09240 PF01176 Translation initiation factor 1A / IF-1 EP12_09245 PF04377 Arginine-tRNA-protein transferase, C terminus EP12_09245 PF04376 Arginine-tRNA-protein transferase, N terminus EP12_09250 PF03588 Leucyl/phenylalanyl-tRNA protein transferase EP12_09255 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP12_09260 PF04217 Protein of unknown function, DUF412 EP12_09265 PF10263 SprT-like family EP12_09270 PF01343 Peptidase family S49 EP12_09280 PF00881 Nitroreductase family EP12_09290 PF00710 Asparaginase, N-terminal EP12_09290 PF17763 Glutaminase/Asparaginase C-terminal domain EP12_09295 PF00990 Diguanylate cyclase, GGDEF domain EP12_09295 PF17158 Membrane-associated sensor, integral membrane domain EP12_09300 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family EP12_09300 PF04055 Radical SAM superfamily EP12_09305 PF03099 Biotin/lipoate A/B protein ligase family EP12_09310 PF04359 Protein of unknown function (DUF493) EP12_09315 PF00768 D-alanyl-D-alanine carboxypeptidase EP12_09315 PF07943 Penicillin-binding protein 5, C-terminal domain EP12_09320 PF05036 Sporulation related domain EP12_09320 PF03330 Lytic transglycolase EP12_09325 PF01098 Cell cycle protein EP12_09330 PF03717 Penicillin-binding Protein dimerisation domain EP12_09330 PF00905 Penicillin binding protein transpeptidase domain EP12_09335 PF02590 Predicted SPOUT methyltransferase EP12_09345 PF01467 Cytidylyltransferase-like EP12_09350 PF14840 Processivity clamp loader gamma complex DNA pol III C-term EP12_09350 PF06144 DNA polymerase III, delta subunit EP12_09355 PF04390 Lipopolysaccharide-assembly EP12_09360 PF00133 tRNA synthetases class I (I, L, M and V) EP12_09360 PF13603 Leucyl-tRNA synthetase, Domain 2 EP12_09360 PF08264 Anticodon-binding domain of tRNA EP12_09365 PF13654 AAA domain EP12_09365 PF05362 Lon protease (S16) C-terminal proteolytic domain EP12_09370 PF00106 short chain dehydrogenase EP12_09375 PF01985 CRS1 / YhbY (CRM) domain EP12_09380 PF01728 FtsJ-like methyltransferase EP12_09385 PF01434 Peptidase family M41 EP12_09385 PF06480 FtsH Extracellular EP12_09385 PF17862 AAA+ lid domain EP12_09385 PF00004 ATPase family associated with various cellular activities (AAA) EP12_09390 PF00809 Pterin binding enzyme EP12_09395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP12_09395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP12_09395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP12_09395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP12_09400 PF00121 Triosephosphate isomerase EP12_09405 PF03840 Preprotein translocase SecG subunit EP12_09430 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EP12_09430 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EP12_09435 PF00781 Diacylglycerol kinase catalytic domain EP12_09445 PF00106 short chain dehydrogenase EP12_09460 PF00474 Sodium:solute symporter family EP12_09490 PF03725 3' exoribonuclease family, domain 2 EP12_09490 PF00013 KH domain EP12_09490 PF00575 S1 RNA binding domain EP12_09490 PF01138 3' exoribonuclease family, domain 1 EP12_09490 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EP12_09515 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region EP12_09515 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EP12_09535 PF02463 RecF/RecN/SMC N terminal domain EP12_09535 PF06470 SMC proteins Flexible Hinge Domain EP12_09540 PF04354 ZipA, C-terminal FtsZ-binding domain EP12_09545 PF12826 Helix-hairpin-helix motif EP12_09545 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EP12_09545 PF00533 BRCA1 C Terminus (BRCT) domain EP12_09545 PF01653 NAD-dependent DNA ligase adenylation domain EP12_09545 PF03120 NAD-dependent DNA ligase OB-fold domain EP12_09560 PF00005 ABC transporter EP12_09560 PF00664 ABC transporter transmembrane region EP12_09570 PF03966 Trm112p-like protein EP12_09575 PF02348 Cytidylyltransferase EP12_09585 PF00919 Uncharacterized protein family UPF0004 EP12_09585 PF18693 TRAM domain EP12_09585 PF04055 Radical SAM superfamily EP12_09645 PF04299 Putative FMN-binding domain EP12_09685 PF00899 ThiF family EP12_09695 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP12_09695 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP12_09695 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP12_09695 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP12_09705 PF00285 Citrate synthase, C-terminal domain EP12_09710 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EP12_09715 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EP12_09720 PF00890 FAD binding domain EP12_09720 PF02910 Fumarate reductase flavoprotein C-term EP12_09725 PF13085 2Fe-2S iron-sulfur cluster binding domain EP12_09730 PF00676 Dehydrogenase E1 component EP12_09730 PF16078 2-oxoglutarate dehydrogenase N-terminus EP12_09730 PF02779 Transketolase, pyrimidine binding domain EP12_09730 PF16870 2-oxoglutarate dehydrogenase C-terminal EP12_09735 PF02817 e3 binding domain EP12_09735 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP12_09735 PF00364 Biotin-requiring enzyme EP12_09740 PF08442 ATP-grasp domain EP12_09740 PF00549 CoA-ligase EP12_09745 PF00549 CoA-ligase EP12_09745 PF02629 CoA binding domain EP12_09770 PF03714 Bacterial pullanase-associated domain EP12_09770 PF11852 Domain of unknown function (DUF3372) EP12_09770 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EP12_09770 PF17967 Pullulanase N2 domain EP12_09770 PF18494 Pullulanase Ins domain EP12_09785 PF02903 Alpha amylase, N-terminal ig-like domain EP12_09785 PF16657 Maltogenic Amylase, C-terminal domain EP12_09785 PF00128 Alpha amylase, catalytic domain EP12_09790 PF09087 Cyclomaltodextrinase, N-terminal EP12_09790 PF10438 Cyclo-malto-dextrinase C-terminal domain EP12_09790 PF00128 Alpha amylase, catalytic domain EP12_09800 PF00128 Alpha amylase, catalytic domain EP12_09800 PF00686 Starch binding domain EP12_09810 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP12_09810 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain EP12_09815 PF00106 short chain dehydrogenase EP12_09820 PF12262 Bacterial virulence factor lipase N-terminal EP12_09825 PF01804 Penicillin amidase EP12_09830 PF01343 Peptidase family S49 EP12_09830 PF08496 Peptidase family S49 N-terminal EP12_09855 PF00255 Glutathione peroxidase EP12_09860 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP12_09860 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP12_09870 PF00171 Aldehyde dehydrogenase family EP12_09875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP12_09875 PF02770 Acyl-CoA dehydrogenase, middle domain EP12_09875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP12_09885 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP12_09885 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP12_09890 PF13847 Methyltransferase domain EP12_09900 PF00884 Sulfatase EP12_09900 PF11893 Domain of unknown function (DUF3413) EP12_09905 PF07208 Protein of unknown function (DUF1414) EP12_09910 PF04245 37-kD nucleoid-associated bacterial protein EP12_09940 PF06580 Histidine kinase EP12_09940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_09940 PF07694 5TMR of 5TMR-LYT EP12_09945 PF00072 Response regulator receiver domain EP12_09945 PF04397 LytTr DNA-binding domain EP12_09950 PF00365 Phosphofructokinase EP12_09965 PF02384 N-6 DNA Methylase EP12_09965 PF12161 HsdM N-terminal domain EP12_09980 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) EP12_09980 PF11867 Domain of unknown function (DUF3387) EP12_09980 PF18766 SWI2/SNF2 ATPase EP12_10005 PF00753 Metallo-beta-lactamase superfamily EP12_10005 PF16123 Hydroxyacylglutathione hydrolase C-terminus EP12_10010 PF01794 Ferric reductase like transmembrane component EP12_10030 PF00005 ABC transporter EP12_10065 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP12_10065 PF00072 Response regulator receiver domain EP12_10065 PF00989 PAS fold EP12_10065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_10065 PF01627 Hpt domain EP12_10065 PF00512 His Kinase A (phospho-acceptor) domain EP12_10085 PF00849 RNA pseudouridylate synthase EP12_10085 PF01479 S4 domain EP12_10095 PF00563 EAL domain EP12_10095 PF00990 Diguanylate cyclase, GGDEF domain EP12_10095 PF03707 Bacterial signalling protein N terminal repeat EP12_10100 PF00271 Helicase conserved C-terminal domain EP12_10100 PF00270 DEAD/DEAH box helicase EP12_10105 PF01144 Coenzyme A transferase EP12_10110 PF01144 Coenzyme A transferase EP12_10140 PF03466 LysR substrate binding domain EP12_10140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_10145 PF03315 Serine dehydratase beta chain EP12_10145 PF03313 Serine dehydratase alpha chain EP12_10150 PF00293 NUDIX domain EP12_10155 PF00425 chorismate binding enzyme EP12_10155 PF04715 Anthranilate synthase component I, N terminal region EP12_10165 PF02646 RmuC family EP12_10170 PF00990 Diguanylate cyclase, GGDEF domain EP12_10170 PF08448 PAS fold EP12_10190 PF05922 Peptidase inhibitor I9 EP12_10190 PF02225 PA domain EP12_10190 PF13860 FlgD Ig-like domain EP12_10190 PF00082 Subtilase family EP12_10195 PF00676 Dehydrogenase E1 component EP12_10200 PF02780 Transketolase, C-terminal domain EP12_10200 PF02779 Transketolase, pyrimidine binding domain EP12_10205 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP12_10205 PF00364 Biotin-requiring enzyme EP12_10205 PF02817 e3 binding domain EP12_10210 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ EP12_10215 PF00069 Protein kinase domain EP12_10225 PF00132 Bacterial transferase hexapeptide (six repeats) EP12_10230 PF00266 Aminotransferase class-V EP12_10240 PF13185 GAF domain EP12_10250 PF04352 ProQ/FINO family EP12_10250 PF17516 ProQ C-terminal domain EP12_10255 PF17804 Tail specific protease N-terminal domain EP12_10255 PF03572 Peptidase family S41 EP12_10255 PF00595 PDZ domain EP12_10255 PF11818 C-terminal domain of tail specific protease (DUF3340) EP12_10260 PF00209 Sodium:neurotransmitter symporter family EP12_10310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP12_10315 PF00873 AcrB/AcrD/AcrF family EP12_10325 PF00175 Oxidoreductase NAD-binding domain EP12_10325 PF00111 2Fe-2S iron-sulfur cluster binding domain EP12_10325 PF00970 Oxidoreductase FAD-binding domain EP12_10380 PF00042 Globin EP12_10380 PF00175 Oxidoreductase NAD-binding domain EP12_10380 PF00970 Oxidoreductase FAD-binding domain EP12_10405 PF02769 AIR synthase related protein, C-terminal domain EP12_10405 PF00586 AIR synthase related protein, N-terminal domain EP12_10410 PF00376 MerR family regulatory protein EP12_10410 PF09278 MerR, DNA binding EP12_10415 PF00403 Heavy-metal-associated domain EP12_10460 PF00462 Glutaredoxin EP12_10475 PF05275 Copper resistance protein B precursor (CopB) EP12_10480 PF07731 Multicopper oxidase EP12_10480 PF07732 Multicopper oxidase EP12_10480 PF00394 Multicopper oxidase EP12_10505 PF12833 Helix-turn-helix domain EP12_10505 PF02311 AraC-like ligand binding domain EP12_10510 PF13411 MerR HTH family regulatory protein EP12_10525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP12_10525 PF00529 HlyD membrane-fusion protein of T1SS EP12_10530 PF00873 AcrB/AcrD/AcrF family EP12_10535 PF16916 Dimerisation domain of Zinc Transporter EP12_10535 PF01545 Cation efflux family EP12_10555 PF00873 AcrB/AcrD/AcrF family EP12_10560 PF00593 TonB dependent receptor EP12_10560 PF07715 TonB-dependent Receptor Plug Domain EP12_10560 PF07660 Secretin and TonB N terminus short domain EP12_10600 PF13411 MerR HTH family regulatory protein EP12_10605 PF02411 MerT mercuric transport protein EP12_10610 PF00403 Heavy-metal-associated domain EP12_10625 PF13276 HTH-like domain EP12_10625 PF13333 Integrase core domain EP12_10625 PF00665 Integrase core domain EP12_10630 PF01527 Transposase EP12_10635 PF01526 Tn3 transposase DDE domain EP12_10635 PF13700 Domain of unknown function (DUF4158) EP12_10655 PF01381 Helix-turn-helix EP12_10680 PF00512 His Kinase A (phospho-acceptor) domain EP12_10680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_10680 PF00672 HAMP domain EP12_10685 PF00072 Response regulator receiver domain EP12_10685 PF00486 Transcriptional regulatory protein, C terminal EP12_10695 PF07044 Protein of unknown function (DUF1329) EP12_10715 PF01180 Dihydroorotate dehydrogenase EP12_10720 PF10672 S-adenosylmethionine-dependent methyltransferase EP12_10720 PF02926 THUMP domain EP12_10720 PF01170 Putative RNA methylase family UPF0020 EP12_10740 PF04957 Ribosome modulation factor EP12_10745 PF07977 FabA-like domain EP12_10755 PF00875 DNA photolyase EP12_10755 PF03441 FAD binding domain of DNA photolyase EP12_10765 PF03441 FAD binding domain of DNA photolyase EP12_10765 PF00875 DNA photolyase EP12_10770 PF04244 Deoxyribodipyrimidine photo-lyase-related protein EP12_10790 PF01219 Prokaryotic diacylglycerol kinase EP12_10795 PF00582 Universal stress protein family EP12_10815 PF00210 Ferritin-like domain EP12_10820 PF00210 Ferritin-like domain EP12_10830 PF00115 Cytochrome C and Quinol oxidase polypeptide I EP12_10845 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EP12_10845 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP EP12_10855 PF00403 Heavy-metal-associated domain EP12_10870 PF00027 Cyclic nucleotide-binding domain EP12_10870 PF13545 Crp-like helix-turn-helix domain EP12_10875 PF00582 Universal stress protein family EP12_10880 PF01171 PP-loop family EP12_10885 PF01734 Patatin-like phospholipase EP12_10905 PF01810 LysE type translocator EP12_10910 PF02146 Sir2 family EP12_10915 PF00581 Rhodanese-like domain EP12_10920 PF08534 Redoxin EP12_10980 PF00589 Phage integrase family EP12_10980 PF13356 Arm DNA-binding domain EP12_11000 PF01066 CDP-alcohol phosphatidyltransferase EP12_11005 PF01541 GIY-YIG catalytic domain EP12_11005 PF02151 UvrB/uvrC motif EP12_11005 PF08459 UvrC Helix-hairpin-helix N-terminal EP12_11010 PF00196 Bacterial regulatory proteins, luxR family EP12_11010 PF00072 Response regulator receiver domain EP12_11015 PF02678 Pirin EP12_11015 PF17954 Quercetinase C-terminal cupin domain EP12_11025 PF03781 Sulfatase-modifying factor enzyme 1 EP12_11025 PF12867 DinB superfamily EP12_11035 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase EP12_11040 PF07681 DoxX EP12_11045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_11045 PF03466 LysR substrate binding domain EP12_11060 PF01027 Inhibitor of apoptosis-promoting Bax1 EP12_11065 PF02635 DsrE/DsrF-like family EP12_11080 PF04358 DsrC like protein EP12_11090 PF03783 Curli production assembly/transport component CsgG EP12_11100 PF05643 Putative bacterial lipoprotein (DUF799) EP12_11105 PF02403 Seryl-tRNA synthetase N-terminal domain EP12_11105 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP12_11110 PF02537 CrcB-like protein, Camphor Resistance (CrcB) EP12_11115 PF16193 AAA C-terminal domain EP12_11115 PF12002 MgsA AAA+ ATPase C terminal EP12_11115 PF00004 ATPase family associated with various cellular activities (AAA) EP12_11120 PF03548 Outer membrane lipoprotein carrier protein LolA EP12_11125 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EP12_11125 PF17854 FtsK alpha domain EP12_11125 PF01580 FtsK/SpoIIIE family EP12_11125 PF09397 Ftsk gamma domain EP12_11130 PF01037 Lrp/AsnC ligand binding domain EP12_11135 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EP12_11135 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EP12_11140 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EP12_11145 PF18073 Rubredoxin metal binding domain EP12_11160 PF00216 Bacterial DNA-binding protein EP12_11165 PF00575 S1 RNA binding domain EP12_11170 PF02224 Cytidylate kinase EP12_11175 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EP12_11180 PF00266 Aminotransferase class-V EP12_11200 PF03477 ATP cone domain EP12_11200 PF02867 Ribonucleotide reductase, barrel domain EP12_11200 PF00317 Ribonucleotide reductase, all-alpha domain EP12_11205 PF00268 Ribonucleotide reductase, small chain EP12_11210 PF00111 2Fe-2S iron-sulfur cluster binding domain EP12_11235 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP12_11235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP12_11240 PF00892 EamA-like transporter family EP12_11245 PF01259 SAICAR synthetase EP12_11250 PF06804 NlpB/DapX lipoprotein EP12_11255 PF00701 Dihydrodipicolinate synthetase family EP12_11265 PF00578 AhpC/TSA family EP12_11270 PF01594 AI-2E family transporter EP12_11275 PF01435 Peptidase family M48 EP12_11275 PF13181 Tetratricopeptide repeat EP12_11280 PF11412 Disulphide bond corrector protein DsbC EP12_11280 PF02683 Cytochrome C biogenesis protein transmembrane region EP12_11290 PF03358 NADPH-dependent FMN reductase EP12_11330 PF00557 Metallopeptidase family M24 EP12_11335 PF01965 DJ-1/PfpI family EP12_11350 PF00308 Bacterial dnaA protein EP12_11380 PF00196 Bacterial regulatory proteins, luxR family EP12_11380 PF00072 Response regulator receiver domain EP12_11385 PF13649 Methyltransferase domain EP12_11410 PF00128 Alpha amylase, catalytic domain EP12_11415 PF13419 Haloacid dehalogenase-like hydrolase EP12_11420 PF00994 Probable molybdopterin binding domain EP12_11420 PF03454 MoeA C-terminal region (domain IV) EP12_11420 PF03453 MoeA N-terminal region (domain I and II) EP12_11425 PF01554 MatE EP12_11445 PF00291 Pyridoxal-phosphate dependent enzyme EP12_11465 PF01527 Transposase EP12_11480 PF00378 Enoyl-CoA hydratase/isomerase EP12_11495 PF00255 Glutathione peroxidase EP12_11500 PF02525 Flavodoxin-like fold EP12_11505 PF01053 Cys/Met metabolism PLP-dependent enzyme EP12_11520 PF00155 Aminotransferase class I and II EP12_11540 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EP12_11555 PF02770 Acyl-CoA dehydrogenase, middle domain EP12_11555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP12_11555 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP12_11555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP12_11560 PF12833 Helix-turn-helix domain EP12_11560 PF02311 AraC-like ligand binding domain EP12_11565 PF07715 TonB-dependent Receptor Plug Domain EP12_11565 PF00593 TonB dependent receptor EP12_11580 PF00873 AcrB/AcrD/AcrF family EP12_11585 PF13533 Biotin-lipoyl like EP12_11595 PF01012 Electron transfer flavoprotein domain EP12_11595 PF00766 Electron transfer flavoprotein FAD-binding domain EP12_11600 PF01012 Electron transfer flavoprotein domain EP12_11615 PF00816 H-NS histone family EP12_11620 PF12697 Alpha/beta hydrolase family EP12_11630 PF00258 Flavodoxin EP12_11640 PF01475 Ferric uptake regulator family EP12_11645 PF01063 Amino-transferase class IV EP12_11650 PF02626 Carboxyltransferase domain, subdomain A and B EP12_11660 PF03746 LamB/YcsF family EP12_11665 PF13509 S1 domain EP12_11665 PF17783 CvfB-like winged helix domain EP12_11670 PF02566 OsmC-like protein EP12_11695 PF13286 Phosphohydrolase-associated domain EP12_11695 PF01966 HD domain EP12_11700 PF00196 Bacterial regulatory proteins, luxR family EP12_11705 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EP12_11710 PF07715 TonB-dependent Receptor Plug Domain EP12_11710 PF00593 TonB dependent receptor EP12_11715 PF00174 Oxidoreductase molybdopterin binding domain EP12_11725 PF09335 SNARE associated Golgi protein EP12_11735 PF02810 SEC-C motif EP12_11750 PF00583 Acetyltransferase (GNAT) family EP12_11755 PF00990 Diguanylate cyclase, GGDEF domain EP12_11760 PF13460 NAD(P)H-binding EP12_11770 PF01026 TatD related DNase EP12_11775 PF09115 DNA polymerase III, delta subunit, C terminal EP12_11780 PF02223 Thymidylate kinase EP12_11785 PF02618 YceG-like family EP12_11800 PF08240 Alcohol dehydrogenase GroES-like domain EP12_11800 PF00107 Zinc-binding dehydrogenase EP12_11810 PF02770 Acyl-CoA dehydrogenase, middle domain EP12_11810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP12_11810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP12_11835 PF06969 HemN C-terminal domain EP12_11835 PF04055 Radical SAM superfamily EP12_11845 PF00528 Binding-protein-dependent transport system inner membrane component EP12_11855 PF02391 MoaE protein EP12_11860 PF02597 ThiS family EP12_11865 PF01967 MoaC family EP12_11870 PF00994 Probable molybdopterin binding domain EP12_11875 PF00899 ThiF family EP12_11895 PF00155 Aminotransferase class I and II EP12_11900 PF03435 Saccharopine dehydrogenase NADP binding domain EP12_11905 PF00155 Aminotransferase class I and II EP12_11930 PF13538 UvrD-like helicase C-terminal domain EP12_11940 PF17946 RecC C-terminal domain EP12_11955 PF00501 AMP-binding enzyme EP12_11960 PF00563 EAL domain EP12_11960 PF03707 Bacterial signalling protein N terminal repeat EP12_11960 PF00990 Diguanylate cyclase, GGDEF domain EP12_11965 PF17770 Ribonuclease J C-terminal domain EP12_11965 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain EP12_11965 PF12706 Beta-lactamase superfamily domain EP12_11970 PF04337 Protein of unknown function, DUF480 EP12_11985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_11985 PF03466 LysR substrate binding domain EP12_12000 PF04219 Protein of unknown function, DUF EP12_12010 PF01022 Bacterial regulatory protein, arsR family EP12_12030 PF00158 Sigma-54 interaction domain EP12_12030 PF00072 Response regulator receiver domain EP12_12030 PF02954 Bacterial regulatory protein, Fis family EP12_12040 PF01590 GAF domain EP12_12040 PF00512 His Kinase A (phospho-acceptor) domain EP12_12040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_12040 PF08446 PAS fold EP12_12040 PF00360 Phytochrome region EP12_12045 PF00072 Response regulator receiver domain EP12_12075 PF07043 Protein of unknown function (DUF1328) EP12_12095 PF07023 Protein of unknown function (DUF1315) EP12_12105 PF01235 Sodium:alanine symporter family EP12_12120 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP12_12120 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EP12_12130 PF01641 SelR domain EP12_12135 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain EP12_12135 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP12_12140 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EP12_12140 PF00128 Alpha amylase, catalytic domain EP12_12150 PF02446 4-alpha-glucanotransferase EP12_12160 PF01263 Aldose 1-epimerase EP12_12170 PF01081 KDPG and KHG aldolase EP12_12175 PF02685 Glucokinase EP12_12180 PF00920 Dehydratase family EP12_12190 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain EP12_12190 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain EP12_12195 PF01380 SIS domain EP12_12195 PF01418 Helix-turn-helix domain, rpiR family EP12_12200 PF02887 Pyruvate kinase, alpha/beta domain EP12_12200 PF00224 Pyruvate kinase, barrel domain EP12_12205 PF01048 Phosphorylase superfamily EP12_12245 PF00512 His Kinase A (phospho-acceptor) domain EP12_12245 PF00672 HAMP domain EP12_12245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_12250 PF00486 Transcriptional regulatory protein, C terminal EP12_12250 PF00072 Response regulator receiver domain EP12_12275 PF09347 Domain of unknown function (DUF1989) EP12_12290 PF04962 KduI/IolB family EP12_12295 PF03480 Bacterial extracellular solute-binding protein, family 7 EP12_12310 PF00356 Bacterial regulatory proteins, lacI family EP12_12315 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus EP12_12315 PF08666 SAF domain EP12_12320 PF02614 Glucuronate isomerase EP12_12325 PF01232 Mannitol dehydrogenase Rossmann domain EP12_12325 PF08125 Mannitol dehydrogenase C-terminal domain EP12_12330 PF00294 pfkB family carbohydrate kinase EP12_12335 PF13472 GDSL-like Lipase/Acylhydrolase family EP12_12345 PF07470 Glycosyl Hydrolase Family 88 EP12_12350 PF00295 Glycosyl hydrolases family 28 EP12_12355 PF01095 Pectinesterase EP12_12375 PF00873 AcrB/AcrD/AcrF family EP12_12390 PF00005 ABC transporter EP12_12405 PF00356 Bacterial regulatory proteins, lacI family EP12_12410 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EP12_12410 PF13378 Enolase C-terminal domain-like EP12_12415 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EP12_12415 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EP12_12430 PF00990 Diguanylate cyclase, GGDEF domain EP12_12430 PF03707 Bacterial signalling protein N terminal repeat EP12_12430 PF00563 EAL domain EP12_12455 PF00486 Transcriptional regulatory protein, C terminal EP12_12455 PF00072 Response regulator receiver domain EP12_12460 PF16527 Two-component sensor protein CpxA, periplasmic domain EP12_12460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_12460 PF00512 His Kinase A (phospho-acceptor) domain EP12_12460 PF00672 HAMP domain EP12_12470 PF11849 Domain of unknown function (DUF3369) EP12_12480 PF00939 Sodium:sulfate symporter transmembrane region EP12_12485 PF00692 dUTPase EP12_12490 PF10609 NUBPL iron-transfer P-loop NTPase EP12_12495 PF08264 Anticodon-binding domain of tRNA EP12_12495 PF01588 Putative tRNA binding domain EP12_12495 PF09334 tRNA synthetases class I (M) EP12_12500 PF08241 Methyltransferase domain EP12_12505 PF00753 Metallo-beta-lactamase superfamily EP12_12505 PF16123 Hydroxyacylglutathione hydrolase C-terminus EP12_12525 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EP12_12530 PF00149 Calcineurin-like phosphoesterase EP12_12535 PF00245 Alkaline phosphatase EP12_12540 PF00245 Alkaline phosphatase EP12_12560 PF00107 Zinc-binding dehydrogenase EP12_12560 PF08240 Alcohol dehydrogenase GroES-like domain EP12_12565 PF03466 LysR substrate binding domain EP12_12565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_12570 PF04336 Acyl carrier protein phosphodiesterase EP12_12575 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) EP12_12585 PF00156 Phosphoribosyl transferase domain EP12_12590 PF02674 Colicin V production protein EP12_12595 PF05036 Sporulation related domain EP12_12600 PF02875 Mur ligase family, glutamate ligase domain EP12_12600 PF08245 Mur ligase middle domain EP12_12605 PF17848 Acetyl-coA carboxylase zinc finger domain EP12_12605 PF01039 Carboxyl transferase domain EP12_12610 PF01416 tRNA pseudouridine synthase EP12_12635 PF02801 Beta-ketoacyl synthase, C-terminal domain EP12_12635 PF00109 Beta-ketoacyl synthase, N-terminal domain EP12_12715 PF00440 Bacterial regulatory proteins, tetR family EP12_12715 PF02909 Tetracyclin repressor-like, C-terminal domain EP12_12730 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain EP12_12730 PF06974 Protein of unknown function (DUF1298) EP12_12740 PF04286 Protein of unknown function (DUF445) EP12_12765 PF00326 Prolyl oligopeptidase family EP12_12765 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EP12_12770 PF00392 Bacterial regulatory proteins, gntR family EP12_12770 PF07840 FadR C-terminal domain EP12_12780 PF02600 Disulfide bond formation protein DsbB EP12_12785 PF13302 Acetyltransferase (GNAT) domain EP12_12790 PF03692 Putative zinc- or iron-chelating domain EP12_12795 PF01557 Fumarylacetoacetate (FAA) hydrolase family EP12_12805 PF05166 YcgL domain EP12_12810 PF00570 HRDC domain EP12_12810 PF01612 3'-5' exonuclease EP12_12815 PF00501 AMP-binding enzyme EP12_12815 PF13193 AMP-binding enzyme C-terminal domain EP12_12820 PF12697 Alpha/beta hydrolase family EP12_12835 PF00814 Glycoprotease family EP12_12840 PF13307 Helicase C-terminal domain EP12_12840 PF06733 DEAD_2 EP12_12885 PF01634 ATP phosphoribosyltransferase EP12_12885 PF08029 HisG, C-terminal domain EP12_12900 PF00475 Imidazoleglycerol-phosphate dehydratase EP12_12910 PF00977 Histidine biosynthesis protein EP12_12915 PF00977 Histidine biosynthesis protein EP12_12920 PF01502 Phosphoribosyl-AMP cyclohydrolase EP12_12920 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase EP12_12950 PF00593 TonB dependent receptor EP12_12950 PF07715 TonB-dependent Receptor Plug Domain EP12_12960 PF05191 Adenylate kinase, active site lid EP12_12965 PF00183 Hsp90 protein EP12_12965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_12970 PF02132 RecR protein EP12_12970 PF13662 Toprim domain EP12_12985 PF02575 YbaB/EbfC DNA-binding family EP12_12990 PF12170 DNA polymerase III tau subunit V interacting with alpha EP12_12990 PF12169 DNA polymerase III subunits gamma and tau domain III EP12_12995 PF00156 Phosphoribosyl transferase domain EP12_13005 PF05114 Protein of unknown function (DUF692) EP12_13015 PF12894 Anaphase-promoting complex subunit 4 WD40 domain EP12_13015 PF00400 WD domain, G-beta repeat EP12_13025 PF00360 Phytochrome region EP12_13025 PF00990 Diguanylate cyclase, GGDEF domain EP12_13025 PF01590 GAF domain EP12_13025 PF00563 EAL domain EP12_13070 PF00004 ATPase family associated with various cellular activities (AAA) EP12_13070 PF07724 AAA domain (Cdc48 subfamily) EP12_13070 PF17871 AAA lid domain EP12_13070 PF10431 C-terminal, D2-small domain, of ClpB protein EP12_13070 PF02861 Clp amino terminal domain, pathogenicity island component EP12_13080 PF01479 S4 domain EP12_13080 PF00849 RNA pseudouridylate synthase EP12_13085 PF13525 Outer membrane lipoprotein EP12_13095 PF04542 Sigma-70 region 2 EP12_13095 PF04545 Sigma-70, region 4 EP12_13110 PF00106 short chain dehydrogenase EP12_13130 PF13677 Membrane MotB of proton-channel complex MotA/MotB EP12_13130 PF00691 OmpA family EP12_13135 PF01618 MotA/TolQ/ExbB proton channel family EP12_13140 PF02609 Exonuclease VII small subunit EP12_13145 PF00348 Polyprenyl synthetase EP12_13150 PF02779 Transketolase, pyrimidine binding domain EP12_13150 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EP12_13150 PF02780 Transketolase, C-terminal domain EP12_13155 PF04608 Phosphatidylglycerophosphatase A EP12_13160 PF00586 AIR synthase related protein, N-terminal domain EP12_13160 PF02769 AIR synthase related protein, C-terminal domain EP12_13165 PF01029 NusB family EP12_13170 PF00885 6,7-dimethyl-8-ribityllumazine synthase EP12_13175 PF00925 GTP cyclohydrolase II EP12_13175 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EP12_13180 PF00677 Lumazine binding domain EP12_13185 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EP12_13185 PF01872 RibD C-terminal domain EP12_13190 PF03477 ATP cone domain EP12_13195 PF00464 Serine hydroxymethyltransferase EP12_13200 PF00132 Bacterial transferase hexapeptide (six repeats) EP12_13200 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EP12_13200 PF14602 Hexapeptide repeat of succinyl-transferase EP12_13215 PF18073 Rubredoxin metal binding domain EP12_13225 PF18429 Domain of unknown function (DUF5609) EP12_13235 PF01026 TatD related DNase EP12_13240 PF01243 Pyridoxamine 5'-phosphate oxidase EP12_13240 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region EP12_13245 PF07650 KH domain EP12_13245 PF01926 50S ribosome-binding GTPase EP12_13250 PF00035 Double-stranded RNA binding motif EP12_13250 PF14622 Ribonuclease-III-like EP12_13255 PF10502 Signal peptidase, peptidase S26 EP12_13260 PF00009 Elongation factor Tu GTP binding domain EP12_13260 PF03144 Elongation factor Tu domain 2 EP12_13260 PF06421 GTP-binding protein LepA C-terminus EP12_13260 PF00679 Elongation factor G C-terminus EP12_13270 PF17188 MucB/RseB C-terminal domain EP12_13270 PF03888 MucB/RseB N-terminal domain EP12_13280 PF04542 Sigma-70 region 2 EP12_13280 PF08281 Sigma-70, region 4 EP12_13300 PF03937 Flavinator of succinate dehydrogenase EP12_13310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP12_13315 PF00543 Nitrogen regulatory protein P-II EP12_13320 PF02540 NAD synthase EP12_13380 PF02401 LytB protein EP12_13385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP12_13390 PF01252 Signal peptidase (SPase) II EP12_13400 PF01687 Riboflavin kinase EP12_13400 PF06574 FAD synthetase EP12_13405 PF03023 Lipid II flippase MurJ EP12_13410 PF01649 Ribosomal protein S20 EP12_13415 PF00106 short chain dehydrogenase EP12_13430 PF01546 Peptidase family M20/M25/M40 EP12_13430 PF07687 Peptidase dimerisation domain EP12_13445 PF00216 Bacterial DNA-binding protein EP12_13450 PF02190 ATP-dependent protease La (LON) substrate-binding domain EP12_13450 PF05362 Lon protease (S16) C-terminal proteolytic domain EP12_13450 PF00004 ATPase family associated with various cellular activities (AAA) EP12_13455 PF06689 ClpX C4-type zinc finger EP12_13455 PF10431 C-terminal, D2-small domain, of ClpB protein EP12_13455 PF07724 AAA domain (Cdc48 subfamily) EP12_13460 PF00574 Clp protease EP12_13465 PF05697 Bacterial trigger factor protein (TF) EP12_13465 PF05698 Bacterial trigger factor protein (TF) C-terminus EP12_13465 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP12_13495 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EP12_13495 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EP12_13505 PF18389 TrmO C-terminal domain EP12_13505 PF01980 tRNA-methyltransferase O EP12_13510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP12_13510 PF03129 Anticodon binding domain EP12_13520 PF02253 Phospholipase A1 EP12_13525 PF00850 Histone deacetylase domain EP12_13535 PF00117 Glutamine amidotransferase class-I EP12_13535 PF00958 GMP synthase C terminal domain EP12_13535 PF02540 NAD synthase EP12_13540 PF00478 IMP dehydrogenase / GMP reductase domain EP12_13540 PF00571 CBS domain EP12_13545 PF02601 Exonuclease VII, large subunit EP12_13545 PF13742 OB-fold nucleic acid binding domain EP12_13560 PF13360 PQQ-like domain EP12_13565 PF09976 Tetratricopeptide repeat-like domain EP12_13570 PF03129 Anticodon binding domain EP12_13570 PF13393 Histidyl-tRNA synthetase EP12_13575 PF04551 GcpE protein EP12_13590 PF04055 Radical SAM superfamily EP12_13595 PF00334 Nucleoside diphosphate kinase EP12_13600 PF02657 Fe-S metabolism associated domain EP12_13605 PF01883 Iron-sulfur cluster assembly protein EP12_13610 PF01521 Iron-sulphur cluster biosynthesis EP12_13615 PF00266 Aminotransferase class-V EP12_13620 PF01458 Uncharacterized protein family (UPF0051) EP12_13625 PF00005 ABC transporter EP12_13635 PF00266 Aminotransferase class-V EP12_13640 PF02082 Transcriptional regulator EP12_13645 PF00132 Bacterial transferase hexapeptide (six repeats) EP12_13645 PF06426 Serine acetyltransferase, N-terminal EP12_13650 PF00588 SpoU rRNA Methylase family EP12_13655 PF00459 Inositol monophosphatase family EP12_13670 PF07549 SecD/SecF GG Motif EP12_13670 PF02355 Protein export membrane protein EP12_13675 PF02355 Protein export membrane protein EP12_13675 PF13721 SecD export protein N-terminal TM region EP12_13675 PF07549 SecD/SecF GG Motif EP12_13680 PF02699 Preprotein translocase subunit EP12_13685 PF01702 Queuine tRNA-ribosyltransferase EP12_13690 PF02547 Queuosine biosynthesis protein EP12_13705 PF04012 PspA/IM30 family EP12_13710 PF07885 Ion channel EP12_13730 PF03738 Glutathionylspermidine synthase preATP-grasp EP12_13745 PF04960 Glutaminase EP12_13750 PF00245 Alkaline phosphatase EP12_13760 PF00463 Isocitrate lyase family EP12_13765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_13765 PF03466 LysR substrate binding domain EP12_13770 PF01274 Malate synthase EP12_13795 PF02913 FAD linked oxidases, C-terminal domain EP12_13795 PF01565 FAD binding domain EP12_13820 PF00483 Nucleotidyl transferase EP12_13820 PF00132 Bacterial transferase hexapeptide (six repeats) EP12_13820 PF14602 Hexapeptide repeat of succinyl-transferase EP12_13855 PF00733 Asparagine synthase EP12_13855 PF13537 Glutamine amidotransferase domain EP12_13865 PF00534 Glycosyl transferases group 1 EP12_13865 PF13439 Glycosyltransferase Family 4 EP12_13900 PF00535 Glycosyl transferase family 2 EP12_13925 PF13439 Glycosyltransferase Family 4 EP12_13930 PF13439 Glycosyltransferase Family 4 EP12_13930 PF00534 Glycosyl transferases group 1 EP12_13945 PF01522 Polysaccharide deacetylase EP12_13950 PF02397 Bacterial sugar transferase EP12_13965 PF13614 AAA domain EP12_13975 PF13401 AAA domain EP12_13975 PF01471 Putative peptidoglycan binding domain EP12_13980 PF01467 Cytidylyltransferase-like EP12_13980 PF00294 pfkB family carbohydrate kinase EP12_13985 PF01541 GIY-YIG catalytic domain EP12_14005 PF03279 Bacterial lipid A biosynthesis acyltransferase EP12_14015 PF09317 Domain of unknown function (DUF1974) EP12_14015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP12_14015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP12_14015 PF02770 Acyl-CoA dehydrogenase, middle domain EP12_14030 PF03707 Bacterial signalling protein N terminal repeat EP12_14030 PF00990 Diguanylate cyclase, GGDEF domain EP12_14030 PF00563 EAL domain EP12_14035 PF00265 Thymidine kinase EP12_14040 PF00356 Bacterial regulatory proteins, lacI family EP12_14080 PF01926 50S ribosome-binding GTPase EP12_14085 PF08032 RNA 2'-O ribose methyltransferase substrate binding EP12_14085 PF00588 SpoU rRNA Methylase family EP12_14115 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP12_14115 PF00378 Enoyl-CoA hydratase/isomerase EP12_14115 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP12_14130 PF05971 RNA methyltransferase EP12_14165 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP12_14175 PF00111 2Fe-2S iron-sulfur cluster binding domain EP12_14175 PF01799 [2Fe-2S] binding domain EP12_14180 PF03450 CO dehydrogenase flavoprotein C-terminal domain EP12_14180 PF00941 FAD binding domain in molybdopterin dehydrogenase EP12_14185 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EP12_14185 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EP12_14190 PF00881 Nitroreductase family EP12_14195 PF12633 Adenylate cyclase NT domain EP12_14195 PF01295 Adenylate cyclase, class-I EP12_14205 PF00144 Beta-lactamase EP12_14205 PF11954 Domain of unknown function (DUF3471) EP12_14230 PF01738 Dienelactone hydrolase family EP12_14240 PF00128 Alpha amylase, catalytic domain EP12_14250 PF01965 DJ-1/PfpI family EP12_14265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_14265 PF03466 LysR substrate binding domain EP12_14275 PF01979 Amidohydrolase family EP12_14285 PF04542 Sigma-70 region 2 EP12_14285 PF08281 Sigma-70, region 4 EP12_14315 PF00593 TonB dependent receptor EP12_14315 PF07715 TonB-dependent Receptor Plug Domain EP12_14330 PF03631 Virulence factor BrkB EP12_14335 PF00072 Response regulator receiver domain EP12_14335 PF00196 Bacterial regulatory proteins, luxR family EP12_14355 PF07715 TonB-dependent Receptor Plug Domain EP12_14355 PF00593 TonB dependent receptor EP12_14355 PF07660 Secretin and TonB N terminus short domain EP12_14375 PF03965 Penicillinase repressor EP12_14405 PF07152 YaeQ protein EP12_14415 PF00083 Sugar (and other) transporter EP12_14425 PF12833 Helix-turn-helix domain EP12_14435 PF00331 Glycosyl hydrolase family 10 EP12_14445 PF04616 Glycosyl hydrolases family 43 EP12_14450 PF00331 Glycosyl hydrolase family 10 EP12_14460 PF02780 Transketolase, C-terminal domain EP12_14460 PF02779 Transketolase, pyrimidine binding domain EP12_14460 PF00456 Transketolase, thiamine diphosphate binding domain EP12_14470 PF04616 Glycosyl hydrolases family 43 EP12_14470 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain EP12_14480 PF00923 Transaldolase/Fructose-6-phosphate aldolase EP12_14520 PF00270 DEAD/DEAH box helicase EP12_14520 PF00271 Helicase conserved C-terminal domain EP12_14520 PF09382 RQC domain EP12_14520 PF00570 HRDC domain EP12_14520 PF16124 RecQ zinc-binding EP12_14525 PF12697 Alpha/beta hydrolase family EP12_14545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_14545 PF00072 Response regulator receiver domain EP12_14545 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP12_14545 PF00512 His Kinase A (phospho-acceptor) domain EP12_14545 PF00672 HAMP domain EP12_14545 PF01627 Hpt domain EP12_14550 PF08281 Sigma-70, region 4 EP12_14550 PF04542 Sigma-70 region 2 EP12_14560 PF02566 OsmC-like protein EP12_14565 PF01625 Peptide methionine sulfoxide reductase EP12_14570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_14570 PF00512 His Kinase A (phospho-acceptor) domain EP12_14570 PF00672 HAMP domain EP12_14570 PF01627 Hpt domain EP12_14570 PF00072 Response regulator receiver domain EP12_14570 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP12_14580 PF00005 ABC transporter EP12_14585 PF00270 DEAD/DEAH box helicase EP12_14585 PF00271 Helicase conserved C-terminal domain EP12_14600 PF00596 Class II Aldolase and Adducin N-terminal domain EP12_14625 PF03786 D-mannonate dehydratase (UxuA) EP12_14640 PF12728 Helix-turn-helix domain EP12_14640 PF02661 Fic/DOC family EP12_14670 PF09614 CRISPR-associated protein (Cas_Csy2) EP12_14675 PF09611 CRISPR-associated protein (Cas_Csy1) EP12_14690 PF01867 CRISPR associated protein Cas1 EP12_14730 PF00403 Heavy-metal-associated domain EP12_14735 PF02411 MerT mercuric transport protein EP12_14740 PF00376 MerR family regulatory protein EP12_14740 PF09278 MerR, DNA binding EP12_14755 PF01597 Glycine cleavage H-protein EP12_14760 PF01571 Aminomethyltransferase folate-binding domain EP12_14760 PF08669 Glycine cleavage T-protein C-terminal barrel domain EP12_14765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_14765 PF03466 LysR substrate binding domain EP12_14770 PF01321 Creatinase/Prolidase N-terminal domain EP12_14770 PF00557 Metallopeptidase family M24 EP12_14780 PF01494 FAD binding domain EP12_14785 PF01494 FAD binding domain EP12_14790 PF00557 Metallopeptidase family M24 EP12_14790 PF05195 Aminopeptidase P, N-terminal domain EP12_14795 PF03695 Uncharacterised protein family (UPF0149) EP12_14800 PF00294 pfkB family carbohydrate kinase EP12_14805 PF01156 Inosine-uridine preferring nucleoside hydrolase EP12_14810 PF01812 5-formyltetrahydrofolate cyclo-ligase family EP12_14815 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EP12_14820 PF01842 ACT domain EP12_14820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP12_14820 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP12_14850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP12_14855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_14855 PF03466 LysR substrate binding domain EP12_14860 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP12_14860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP12_14865 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP12_14865 PF00364 Biotin-requiring enzyme EP12_14865 PF02817 e3 binding domain EP12_14870 PF17831 Pyruvate dehydrogenase E1 component middle domain EP12_14870 PF00456 Transketolase, thiamine diphosphate binding domain EP12_14880 PF00392 Bacterial regulatory proteins, gntR family EP12_14880 PF07729 FCD domain EP12_14900 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain EP12_14900 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain EP12_14905 PF07963 Prokaryotic N-terminal methylation motif EP12_14910 PF00482 Type II secretion system (T2SS), protein F EP12_14915 PF01478 Type IV leader peptidase family EP12_14915 PF06750 Bacterial Peptidase A24 N-terminal domain EP12_14920 PF01121 Dephospho-CoA kinase EP12_14925 PF07072 Cell division protein EP12_14930 PF03884 DNA gyrase inhibitor YacG EP12_14940 PF00356 Bacterial regulatory proteins, lacI family EP12_14945 PF01306 LacY proton/sugar symporter EP12_14955 PF00083 Sugar (and other) transporter EP12_14970 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EP12_14975 PF00293 NUDIX domain EP12_14985 PF01476 LysM domain EP12_14985 PF08525 Opacity-associated protein A N-terminal motif EP12_14985 PF01551 Peptidase family M23 EP12_14990 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase EP12_14995 PF12327 FtsZ family, C-terminal domain EP12_14995 PF00091 Tubulin/FtsZ family, GTPase domain EP12_15000 PF02491 SHS2 domain inserted in FTSA EP12_15005 PF03799 Cell division protein FtsQ EP12_15005 PF08478 POTRA domain, FtsQ-type EP12_15010 PF07478 D-ala D-ala ligase C-terminus EP12_15010 PF01820 D-ala D-ala ligase N-terminus EP12_15015 PF01225 Mur ligase family, catalytic domain EP12_15015 PF08245 Mur ligase middle domain EP12_15015 PF02875 Mur ligase family, glutamate ligase domain EP12_15025 PF01098 Cell cycle protein EP12_15030 PF02875 Mur ligase family, glutamate ligase domain EP12_15030 PF08245 Mur ligase middle domain EP12_15040 PF01225 Mur ligase family, catalytic domain EP12_15040 PF08245 Mur ligase middle domain EP12_15040 PF02875 Mur ligase family, glutamate ligase domain EP12_15055 PF04999 Cell division protein FtsL EP12_15060 PF01795 MraW methylase family EP12_15065 PF02381 MraZ protein, putative antitoxin-like EP12_15075 PF01244 Membrane dipeptidase (Peptidase family M19) EP12_15080 PF00873 AcrB/AcrD/AcrF family EP12_15105 PF08534 Redoxin EP12_15105 PF00462 Glutaredoxin EP12_15120 PF00158 Sigma-54 interaction domain EP12_15120 PF02954 Bacterial regulatory protein, Fis family EP12_15120 PF00072 Response regulator receiver domain EP12_15130 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EP12_15130 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EP12_15140 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP12_15140 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP12_15175 PF00924 Mechanosensitive ion channel EP12_15175 PF05552 Conserved TM helix EP12_15185 PF04452 RNA methyltransferase EP12_15195 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EP12_15195 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EP12_15200 PF02622 Uncharacterized ACR, COG1678 EP12_15205 PF03652 Holliday junction resolvase EP12_15215 PF00437 Type II/IV secretion system protein EP12_15220 PF00437 Type II/IV secretion system protein EP12_15225 PF01168 Alanine racemase, N-terminal domain EP12_15230 PF14748 Pyrroline-5-carboxylate reductase dimerisation EP12_15230 PF03807 NADP oxidoreductase coenzyme F420-dependent EP12_15235 PF02325 YGGT family EP12_15260 PF08787 Alginate lyase EP12_15275 PF03591 AzlC protein EP12_15290 PF03883 Peroxide stress protein YaaA EP12_15295 PF00923 Transaldolase/Fructose-6-phosphate aldolase EP12_15300 PF00342 Phosphoglucose isomerase EP12_15310 PF03167 Uracil DNA glycosylase superfamily EP12_15315 PF00291 Pyridoxal-phosphate dependent enzyme EP12_15315 PF14821 Threonine synthase N terminus EP12_15320 PF08544 GHMP kinases C terminal EP12_15320 PF00288 GHMP kinases N terminal domain EP12_15325 PF00696 Amino acid kinase family EP12_15325 PF01842 ACT domain EP12_15325 PF13840 ACT domain EP12_15325 PF00742 Homoserine dehydrogenase EP12_15325 PF03447 Homoserine dehydrogenase, NAD binding domain EP12_15330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_15330 PF03466 LysR substrate binding domain EP12_15335 PF00107 Zinc-binding dehydrogenase EP12_15335 PF08240 Alcohol dehydrogenase GroES-like domain EP12_15345 PF01022 Bacterial regulatory protein, arsR family EP12_15355 PF03358 NADPH-dependent FMN reductase EP12_15360 PF01758 Sodium Bile acid symporter family EP12_15365 PF00072 Response regulator receiver domain EP12_15370 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) EP12_15375 PF00072 Response regulator receiver domain EP12_15375 PF00486 Transcriptional regulatory protein, C terminal EP12_15395 PF00291 Pyridoxal-phosphate dependent enzyme EP12_15405 PF03435 Saccharopine dehydrogenase NADP binding domain EP12_15405 PF16653 Saccharopine dehydrogenase C-terminal domain EP12_15410 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EP12_15420 PF00990 Diguanylate cyclase, GGDEF domain EP12_15420 PF07694 5TMR of 5TMR-LYT EP12_15425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EP12_15435 PF02021 Uncharacterised protein family UPF0102 EP12_15440 PF13580 SIS domain EP12_15445 PF04972 BON domain EP12_15450 PF07690 Major Facilitator Superfamily EP12_15455 PF00593 TonB dependent receptor EP12_15455 PF07715 TonB-dependent Receptor Plug Domain EP12_15475 PF00285 Citrate synthase, C-terminal domain EP12_15485 PF04303 PrpF protein EP12_15490 PF00990 Diguanylate cyclase, GGDEF domain EP12_15495 PF00474 Sodium:solute symporter family EP12_15510 PF01627 Hpt domain EP12_15510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_15510 PF00072 Response regulator receiver domain EP12_15510 PF18415 Histidine kinase receptor ArcB trans-membrane domain EP12_15510 PF00989 PAS fold EP12_15510 PF00512 His Kinase A (phospho-acceptor) domain EP12_15515 PF01510 N-acetylmuramoyl-L-alanine amidase EP12_15525 PF01493 GXGXG motif EP12_15525 PF01645 Conserved region in glutamate synthase EP12_15525 PF04898 Glutamate synthase central domain EP12_15525 PF00310 Glutamine amidotransferases class-II EP12_15530 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EP12_15530 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP12_15545 PF01048 Phosphorylase superfamily EP12_15585 PF01070 FMN-dependent dehydrogenase EP12_15590 PF01261 Xylose isomerase-like TIM barrel EP12_15595 PF00596 Class II Aldolase and Adducin N-terminal domain EP12_15600 PF00455 DeoR C terminal sensor domain EP12_15600 PF08220 DeoR-like helix-turn-helix domain EP12_15610 PF00294 pfkB family carbohydrate kinase EP12_15635 PF07470 Glycosyl Hydrolase Family 88 EP12_15650 PF05336 L-rhamnose mutarotase EP12_15665 PF00581 Rhodanese-like domain EP12_15675 PF07237 Protein of unknown function (DUF1428) EP12_15680 PF00579 tRNA synthetases class I (W and Y) EP12_15680 PF01479 S4 domain EP12_15685 PF10145 Phage-related minor tail protein EP12_15685 PF01551 Peptidase family M23 EP12_15685 PF01464 Transglycosylase SLT domain EP12_15690 PF03702 Anhydro-N-acetylmuramic acid kinase EP12_15695 PF00072 Response regulator receiver domain EP12_15710 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP12_15720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP12_15725 PF00043 Glutathione S-transferase, C-terminal domain EP12_15725 PF13417 Glutathione S-transferase, N-terminal domain EP12_15730 PF01521 Iron-sulphur cluster biosynthesis EP12_15745 PF03976 Polyphosphate kinase 2 (PPK2) EP12_15750 PF03776 Septum formation topological specificity factor MinE EP12_15755 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EP12_15760 PF03775 Septum formation inhibitor MinC, C-terminal domain EP12_15760 PF05209 Septum formation inhibitor MinC, N-terminal domain EP12_15765 PF10415 Fumarase C C-terminus EP12_15765 PF00206 Lyase EP12_15770 PF00127 Copper binding proteins, plastocyanin/azurin family EP12_15805 PF01566 Natural resistance-associated macrophage protein EP12_15815 PF00196 Bacterial regulatory proteins, luxR family EP12_15815 PF00072 Response regulator receiver domain EP12_15830 PF03951 Glutamine synthetase, beta-Grasp domain EP12_15830 PF00120 Glutamine synthetase, catalytic domain EP12_15840 PF00989 PAS fold EP12_15840 PF00512 His Kinase A (phospho-acceptor) domain EP12_15840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_15845 PF00158 Sigma-54 interaction domain EP12_15845 PF00072 Response regulator receiver domain EP12_15845 PF02954 Bacterial regulatory protein, Fis family EP12_15850 PF00072 Response regulator receiver domain EP12_15855 PF01553 Acyltransferase EP12_15860 PF06877 Regulator of ribonuclease activity B EP12_15880 PF01627 Hpt domain EP12_15880 PF00672 HAMP domain EP12_15880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_15880 PF00512 His Kinase A (phospho-acceptor) domain EP12_15880 PF00072 Response regulator receiver domain EP12_15880 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP12_15885 PF00133 tRNA synthetases class I (I, L, M and V) EP12_15885 PF10458 Valyl tRNA synthetase tRNA binding arm EP12_15885 PF08264 Anticodon-binding domain of tRNA EP12_15890 PF04364 DNA polymerase III chi subunit, HolC EP12_15895 PF02789 Cytosol aminopeptidase family, N-terminal domain EP12_15895 PF00883 Cytosol aminopeptidase family, catalytic domain EP12_15905 PF00672 HAMP domain EP12_15905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP12_15905 PF12729 Four helix bundle sensory module for signal transduction EP12_15910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP12_15910 PF00672 HAMP domain EP12_15915 PF00274 Fructose-bisphosphate aldolase class-I EP12_15940 PF00528 Binding-protein-dependent transport system inner membrane component EP12_15945 PF17912 MalK OB fold domain EP12_15945 PF00005 ABC transporter EP12_15950 PF03459 TOBE domain EP12_15950 PF17912 MalK OB fold domain EP12_15950 PF00005 ABC transporter EP12_15955 PF00158 Sigma-54 interaction domain EP12_15955 PF02954 Bacterial regulatory protein, Fis family EP12_15955 PF01590 GAF domain EP12_15960 PF00121 Triosephosphate isomerase EP12_15965 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain EP12_15970 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain EP12_15975 PF01266 FAD dependent oxidoreductase EP12_15975 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EP12_15980 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EP12_15980 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EP12_15985 PF00005 ABC transporter EP12_15985 PF08402 TOBE domain EP12_16000 PF03739 Lipopolysaccharide export system permease LptF/LptG EP12_16005 PF03739 Lipopolysaccharide export system permease LptF/LptG EP12_16045 PF05853 beta-keto acid cleavage enzyme EP12_16050 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP12_16050 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP12_16090 PF02696 Uncharacterized ACR, YdiU/UPF0061 family EP12_16125 PF00392 Bacterial regulatory proteins, gntR family EP12_16125 PF07729 FCD domain EP12_16135 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EP12_16135 PF00703 Glycosyl hydrolases family 2 EP12_16135 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 EP12_16135 PF16355 Domain of unknown function (DUF4982) EP12_16135 PF02837 Glycosyl hydrolases family 2, sugar binding domain EP12_16155 PF13378 Enolase C-terminal domain-like EP12_16155 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EP12_16160 PF07488 Glycosyl hydrolase family 67 middle domain EP12_16160 PF03648 Glycosyl hydrolase family 67 N-terminus EP12_16160 PF07477 Glycosyl hydrolase family 67 C-terminus EP12_16175 PF03572 Peptidase family S41 EP12_16175 PF14684 Tricorn protease C1 domain EP12_16175 PF07676 WD40-like Beta Propeller Repeat EP12_16175 PF14685 Tricorn protease PDZ domain EP12_16180 PF00593 TonB dependent receptor EP12_16215 PF13426 PAS domain EP12_16215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP12_16215 PF08447 PAS fold EP12_16220 PF00375 Sodium:dicarboxylate symporter family EP12_16230 PF07715 TonB-dependent Receptor Plug Domain EP12_16230 PF00593 TonB dependent receptor EP12_16240 PF01032 FecCD transport family EP12_16250 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EP12_16250 PF05221 S-adenosyl-L-homocysteine hydrolase EP12_16280 PF08787 Alginate lyase EP12_16285 PF00356 Bacterial regulatory proteins, lacI family EP12_16305 PF13419 Haloacid dehalogenase-like hydrolase EP12_16325 PF12697 Alpha/beta hydrolase family EP12_16335 PF11838 ERAP1-like C-terminal domain EP12_16335 PF01433 Peptidase family M1 domain EP12_16340 PF00005 ABC transporter EP12_16365 PF00270 DEAD/DEAH box helicase EP12_16365 PF00271 Helicase conserved C-terminal domain EP12_16370 PF01081 KDPG and KHG aldolase EP12_16375 PF00294 pfkB family carbohydrate kinase EP12_16385 PF00392 Bacterial regulatory proteins, gntR family EP12_16385 PF07729 FCD domain EP12_16390 PF12794 Mechanosensitive ion channel inner membrane domain 1 EP12_16390 PF12795 Mechanosensitive ion channel porin domain EP12_16390 PF00924 Mechanosensitive ion channel EP12_16410 PF00141 Peroxidase EP12_16420 PF02254 TrkA-N domain EP12_16420 PF00999 Sodium/hydrogen exchanger family EP12_16435 PF03372 Endonuclease/Exonuclease/phosphatase family EP12_16440 PF03466 LysR substrate binding domain EP12_16440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_16450 PF01925 Sulfite exporter TauE/SafE EP12_16455 PF00155 Aminotransferase class I and II EP12_16460 PF00072 Response regulator receiver domain EP12_16460 PF08769 Sporulation initiation factor Spo0A C terminal EP12_16475 PF00136 DNA polymerase family B EP12_16475 PF03104 DNA polymerase family B, exonuclease domain EP12_16510 PF05958 tRNA (Uracil-5-)-methyltransferase EP12_16515 PF00440 Bacterial regulatory proteins, tetR family EP12_16525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP12_16525 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP12_16535 PF03167 Uracil DNA glycosylase superfamily EP12_16540 PF00563 EAL domain EP12_16540 PF00990 Diguanylate cyclase, GGDEF domain EP12_16540 PF03707 Bacterial signalling protein N terminal repeat EP12_16550 PF01507 Phosphoadenosine phosphosulfate reductase family EP12_16555 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP12_16555 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP12_16560 PF00667 FAD binding domain EP12_16560 PF00258 Flavodoxin EP12_16560 PF00175 Oxidoreductase NAD-binding domain EP12_16585 PF04012 PspA/IM30 family EP12_16600 PF01207 Dihydrouridine synthase (Dus) EP12_16620 PF13454 FAD-NAD(P)-binding EP12_16635 PF02190 ATP-dependent protease La (LON) substrate-binding domain EP12_16635 PF05362 Lon protease (S16) C-terminal proteolytic domain EP12_16635 PF00004 ATPase family associated with various cellular activities (AAA) EP12_16645 PF00756 Putative esterase EP12_16650 PF01553 Acyltransferase EP12_16655 PF01553 Acyltransferase EP12_16675 PF01370 NAD dependent epimerase/dehydratase family EP12_16680 PF00209 Sodium:neurotransmitter symporter family EP12_16695 PF01625 Peptide methionine sulfoxide reductase EP12_16710 PF00258 Flavodoxin EP12_16720 PF02472 Biopolymer transport protein ExbD/TolR EP12_16730 PF13181 Tetratricopeptide repeat EP12_16730 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) EP12_16735 PF01270 Glycosyl hydrolases family 8 EP12_16760 PF05175 Methyltransferase small domain EP12_16770 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region EP12_16770 PF00326 Prolyl oligopeptidase family EP12_16775 PF08000 Bacterial PH domain EP12_16780 PF00990 Diguanylate cyclase, GGDEF domain EP12_16780 PF00563 EAL domain EP12_16780 PF08448 PAS fold EP12_16785 PF00291 Pyridoxal-phosphate dependent enzyme EP12_16790 PF07969 Amidohydrolase family EP12_16795 PF00753 Metallo-beta-lactamase superfamily EP12_16805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_16805 PF03466 LysR substrate binding domain EP12_16830 PF13230 Glutamine amidotransferases class-II EP12_16855 PF01037 Lrp/AsnC ligand binding domain EP12_16875 PF12704 MacB-like periplasmic core domain EP12_16875 PF00005 ABC transporter EP12_16875 PF02687 FtsX-like permease family EP12_16890 PF09905 DNA-binding protein VF530 EP12_16895 PF02447 GntP family permease EP12_16905 PF00356 Bacterial regulatory proteins, lacI family EP12_16920 PF11799 impB/mucB/samB family C-terminal domain EP12_16920 PF00817 impB/mucB/samB family EP12_16920 PF11798 IMS family HHH motif EP12_16935 PF00111 2Fe-2S iron-sulfur cluster binding domain EP12_16935 PF00970 Oxidoreductase FAD-binding domain EP12_16935 PF00175 Oxidoreductase NAD-binding domain EP12_16940 PF02508 Rnf-Nqr subunit, membrane protein EP12_16945 PF02508 Rnf-Nqr subunit, membrane protein EP12_16955 PF03116 NQR2, RnfD, RnfE family EP12_16960 PF11973 NQRA C-terminal domain EP12_16960 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) EP12_16965 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase EP12_16965 PF12241 Trans-2-enoyl-CoA reductase catalytic region EP12_16965 PF07055 Enoyl reductase FAD binding domain EP12_16970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP12_16970 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EP12_16975 PF00311 Phosphoenolpyruvate carboxylase EP12_16985 PF00141 Peroxidase EP12_16995 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EP12_16995 PF00056 lactate/malate dehydrogenase, NAD binding domain EP12_17000 PF01316 Arginine repressor, DNA binding domain EP12_17000 PF02863 Arginine repressor, C-terminal domain EP12_17005 PF07715 TonB-dependent Receptor Plug Domain EP12_17005 PF00593 TonB dependent receptor EP12_17020 PF00593 TonB dependent receptor EP12_17035 PF00485 Phosphoribulokinase / Uridine kinase family EP12_17040 PF01773 Na+ dependent nucleoside transporter N-terminus EP12_17040 PF07662 Na+ dependent nucleoside transporter C-terminus EP12_17040 PF07670 Nucleoside recognition EP12_17070 PF00474 Sodium:solute symporter family EP12_17080 PF18415 Histidine kinase receptor ArcB trans-membrane domain EP12_17080 PF00072 Response regulator receiver domain EP12_17080 PF00989 PAS fold EP12_17080 PF01627 Hpt domain EP12_17080 PF00512 His Kinase A (phospho-acceptor) domain EP12_17080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_17090 PF18030 RimK PreATP-grasp domain EP12_17090 PF08443 RimK-like ATP-grasp domain EP12_17100 PF18030 RimK PreATP-grasp domain EP12_17100 PF08443 RimK-like ATP-grasp domain EP12_17110 PF00072 Response regulator receiver domain EP12_17110 PF00196 Bacterial regulatory proteins, luxR family EP12_17115 PF00501 AMP-binding enzyme EP12_17115 PF16177 Acetyl-coenzyme A synthetase N-terminus EP12_17115 PF13193 AMP-binding enzyme C-terminal domain EP12_17125 PF02690 Na+/Pi-cotransporter EP12_17130 PF00248 Aldo/keto reductase family EP12_17145 PF06628 Catalase-related immune-responsive EP12_17145 PF00199 Catalase EP12_17250 PF00664 ABC transporter transmembrane region EP12_17250 PF00005 ABC transporter EP12_17250 PF03412 Peptidase C39 family EP12_17255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_17255 PF03466 LysR substrate binding domain EP12_17280 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EP12_17280 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EP12_17280 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EP12_17285 PF00535 Glycosyl transferase family 2 EP12_17290 PF16363 GDP-mannose 4,6 dehydratase EP12_17295 PF04321 RmlD substrate binding domain EP12_17300 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase EP12_17305 PF00483 Nucleotidyl transferase EP12_17320 PF00535 Glycosyl transferase family 2 EP12_17325 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EP12_17335 PF02222 ATP-grasp domain EP12_17365 PF00793 DAHP synthetase I family EP12_17370 PF03737 Aldolase/RraA EP12_17370 PF00180 Isocitrate/isopropylmalate dehydrogenase EP12_17400 PF00483 Nucleotidyl transferase EP12_17400 PF01050 Mannose-6-phosphate isomerase EP12_17415 PF01196 Ribosomal protein L17 EP12_17420 PF01000 RNA polymerase Rpb3/RpoA insert domain EP12_17420 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EP12_17420 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EP12_17425 PF00163 Ribosomal protein S4/S9 N-terminal domain EP12_17425 PF01479 S4 domain EP12_17430 PF00411 Ribosomal protein S11 EP12_17435 PF00416 Ribosomal protein S13/S18 EP12_17440 PF00344 SecY translocase EP12_17445 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EP12_17450 PF00327 Ribosomal protein L30p/L7e EP12_17455 PF00333 Ribosomal protein S5, N-terminal domain EP12_17455 PF03719 Ribosomal protein S5, C-terminal domain EP12_17460 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EP12_17465 PF00347 Ribosomal protein L6 EP12_17470 PF00410 Ribosomal protein S8 EP12_17475 PF00253 Ribosomal protein S14p/S29e EP12_17480 PF00281 Ribosomal protein L5 EP12_17480 PF00673 ribosomal L5P family C-terminus EP12_17485 PF00467 KOW motif EP12_17485 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EP12_17490 PF00238 Ribosomal protein L14p/L23e EP12_17505 PF08032 RNA 2'-O ribose methyltransferase substrate binding EP12_17505 PF00588 SpoU rRNA Methylase family EP12_17515 PF09423 PhoD-like phosphatase EP12_17515 PF16655 PhoD-like phosphatase, N-terminal domain EP12_17525 PF08238 Sel1 repeat EP12_17540 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase EP12_17545 PF00175 Oxidoreductase NAD-binding domain EP12_17545 PF00970 Oxidoreductase FAD-binding domain EP12_17555 PF04389 Peptidase family M28 EP12_17595 PF01654 Cytochrome bd terminal oxidase subunit I EP12_17600 PF02322 Cytochrome bd terminal oxidase subunit II EP12_17615 PF00313 'Cold-shock' DNA-binding domain EP12_17620 PF03109 ABC1 family EP12_17630 PF01209 ubiE/COQ5 methyltransferase family EP12_17640 PF01432 Peptidase family M3 EP12_17645 PF00072 Response regulator receiver domain EP12_17655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_17655 PF00512 His Kinase A (phospho-acceptor) domain EP12_17655 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP12_17665 PF02954 Bacterial regulatory protein, Fis family EP12_17665 PF00072 Response regulator receiver domain EP12_17665 PF00158 Sigma-54 interaction domain EP12_17670 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP12_17670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP12_17675 PF07676 WD40-like Beta Propeller Repeat EP12_17675 PF00326 Prolyl oligopeptidase family EP12_17690 PF03412 Peptidase C39 family EP12_17690 PF00005 ABC transporter EP12_17690 PF00664 ABC transporter transmembrane region EP12_17710 PF00004 ATPase family associated with various cellular activities (AAA) EP12_17710 PF07724 AAA domain (Cdc48 subfamily) EP12_17715 PF00227 Proteasome subunit EP12_17720 PF05036 Sporulation related domain EP12_17725 PF17764 3′ DNA-binding domain (3′BD) EP12_17725 PF18074 Primosomal protein N C-terminal domain EP12_17725 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EP12_17725 PF00270 DEAD/DEAH box helicase EP12_17725 PF00271 Helicase conserved C-terminal domain EP12_17730 PF01197 Ribosomal protein L31 EP12_17740 PF03949 Malic enzyme, NAD binding domain EP12_17740 PF00390 Malic enzyme, N-terminal domain EP12_17745 PF01340 Met Apo-repressor, MetJ EP12_17750 PF02219 Methylenetetrahydrofolate reductase EP12_17755 PF03631 Virulence factor BrkB EP12_17770 PF00561 alpha/beta hydrolase fold EP12_17775 PF02580 D-Tyr-tRNA(Tyr) deacylase EP12_17780 PF00583 Acetyltransferase (GNAT) family EP12_17780 PF09500 Putative thioesterase (yiiD_Cterm) EP12_17785 PF04545 Sigma-70, region 4 EP12_17785 PF00140 Sigma-70 factor, region 1.2 EP12_17785 PF04542 Sigma-70 region 2 EP12_17800 PF18075 FtsX extracellular domain EP12_17805 PF00005 ABC transporter EP12_17810 PF00448 SRP54-type protein, GTPase domain EP12_17810 PF02881 SRP54-type protein, helical bundle domain EP12_17820 PF04222 Protein of unknown function (DUF416) EP12_17825 PF01914 MarC family integral membrane protein EP12_17835 PF00883 Cytosol aminopeptidase family, catalytic domain EP12_17835 PF12404 Peptidase EP12_17840 PF17746 SfsA N-terminal OB domain EP12_17840 PF03749 Sugar fermentation stimulation protein RE domain EP12_17845 PF01258 Prokaryotic dksA/traR C4-type zinc finger EP12_17855 PF12626 Polymerase A arginine-rich C-terminus EP12_17855 PF01743 Poly A polymerase head domain EP12_17855 PF12627 Probable RNA and SrmB- binding site of polymerase A EP12_17860 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EP12_17865 PF02548 Ketopantoate hydroxymethyltransferase EP12_17870 PF02569 Pantoate-beta-alanine ligase EP12_17875 PF00282 Pyridoxal-dependent decarboxylase conserved domain EP12_17890 PF00005 ABC transporter EP12_17900 PF00072 Response regulator receiver domain EP12_17900 PF00486 Transcriptional regulatory protein, C terminal EP12_17905 PF00512 His Kinase A (phospho-acceptor) domain EP12_17905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_17905 PF00672 HAMP domain EP12_17910 PF00593 TonB dependent receptor EP12_17910 PF07715 TonB-dependent Receptor Plug Domain EP12_17915 PF13640 2OG-Fe(II) oxygenase superfamily EP12_17915 PF18331 PKHD-type hydroxylase C-terminal domain EP12_17930 PF01595 Cyclin M transmembrane N-terminal domain EP12_17930 PF00571 CBS domain EP12_17935 PF03773 Predicted permease EP12_17940 PF02554 Carbon starvation protein CstA EP12_17940 PF13722 5TM C-terminal transporter carbon starvation CstA EP12_17955 PF03143 Elongation factor Tu C-terminal domain EP12_17955 PF03144 Elongation factor Tu domain 2 EP12_17955 PF00009 Elongation factor Tu GTP binding domain EP12_17985 PF00177 Ribosomal protein S7p/S5e EP12_17990 PF00164 Ribosomal protein S12/S23 EP12_18000 PF00562 RNA polymerase Rpb2, domain 6 EP12_18000 PF10385 RNA polymerase beta subunit external 1 domain EP12_18000 PF04563 RNA polymerase beta subunit EP12_18000 PF04565 RNA polymerase Rpb2, domain 3 EP12_18000 PF04560 RNA polymerase Rpb2, domain 7 EP12_18000 PF04561 RNA polymerase Rpb2, domain 2 EP12_18010 PF00466 Ribosomal protein L10 EP12_18020 PF00298 Ribosomal protein L11, RNA binding domain EP12_18020 PF03946 Ribosomal protein L11, N-terminal domain EP12_18035 PF02357 Transcription termination factor nusG EP12_18035 PF00467 KOW motif EP12_18040 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EP12_18060 PF00080 Copper/zinc superoxide dismutase (SODC) EP12_18065 PF03737 Aldolase/RraA EP12_18085 PF01979 Amidohydrolase family EP12_18095 PF08212 Lipocalin-like domain EP12_18100 PF00248 Aldo/keto reductase family EP12_18110 PF07690 Major Facilitator Superfamily EP12_18120 PF01227 GTP cyclohydrolase I EP12_18130 PF04371 Porphyromonas-type peptidyl-arginine deiminase EP12_18135 PF00795 Carbon-nitrogen hydrolase EP12_18145 PF17158 Membrane-associated sensor, integral membrane domain EP12_18145 PF00990 Diguanylate cyclase, GGDEF domain EP12_18155 PF12833 Helix-turn-helix domain EP12_18155 PF06719 AraC-type transcriptional regulator N-terminus EP12_18210 PF00271 Helicase conserved C-terminal domain EP12_18210 PF08494 DEAD/H associated EP12_18210 PF00270 DEAD/DEAH box helicase EP12_18220 PF04679 ATP dependent DNA ligase C terminal region EP12_18220 PF04675 DNA ligase N terminus EP12_18220 PF01068 ATP dependent DNA ligase domain EP12_18225 PF00294 pfkB family carbohydrate kinase EP12_18235 PF00326 Prolyl oligopeptidase family EP12_18240 PF00043 Glutathione S-transferase, C-terminal domain EP12_18240 PF02798 Glutathione S-transferase, N-terminal domain EP12_18260 PF00171 Aldehyde dehydrogenase family EP12_18275 PF00762 Ferrochelatase EP12_18290 PF12221 Bacterial membrane protein N terminal EP12_18290 PF01145 SPFH domain / Band 7 family EP12_18295 PF16360 GTP-binding GTPase Middle Region EP12_18295 PF13167 GTP-binding GTPase N-terminal EP12_18295 PF01926 50S ribosome-binding GTPase EP12_18300 PF17209 Hfq protein EP12_18320 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EP12_18330 PF08331 Domain of unknown function (DUF1730) EP12_18355 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ EP12_18360 PF01475 Ferric uptake regulator family EP12_18370 PF01894 Uncharacterised protein family UPF0047 EP12_18375 PF00691 OmpA family EP12_18375 PF05736 OprF membrane domain EP12_18410 PF03948 Ribosomal protein L9, C-terminal domain EP12_18410 PF01281 Ribosomal protein L9, N-terminal domain EP12_18415 PF01084 Ribosomal protein S18 EP12_18420 PF01250 Ribosomal protein S6 EP12_18425 PF00989 PAS fold EP12_18425 PF00672 HAMP domain EP12_18425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP12_18425 PF18698 Histidine kinase sensor domain EP12_18425 PF00512 His Kinase A (phospho-acceptor) domain EP12_18450 PF00356 Bacterial regulatory proteins, lacI family EP12_18460 PF00232 Glycosyl hydrolase family 1 EP12_18470 PF00722 Glycosyl hydrolases family 16 EP12_18480 PF00376 MerR family regulatory protein EP12_18480 PF09278 MerR, DNA binding EP12_18500 PF00005 ABC transporter EP12_18520 PF07715 TonB-dependent Receptor Plug Domain EP12_18520 PF00593 TonB dependent receptor EP12_18540 PF00990 Diguanylate cyclase, GGDEF domain EP12_18540 PF08448 PAS fold EP12_18555 PF08173 Membrane bound YbgT-like protein EP12_18560 PF02322 Cytochrome bd terminal oxidase subunit II EP12_18565 PF01654 Cytochrome bd terminal oxidase subunit I EP12_18620 PF08402 TOBE domain EP12_18620 PF00005 ABC transporter EP12_18670 PF05532 CsbD-like EP12_18675 PF00196 Bacterial regulatory proteins, luxR family EP12_18685 PF07715 TonB-dependent Receptor Plug Domain EP12_18685 PF00593 TonB dependent receptor EP12_18695 PF13181 Tetratricopeptide repeat EP12_18735 PF00111 2Fe-2S iron-sulfur cluster binding domain EP12_18740 PF00155 Aminotransferase class I and II EP12_18750 PF07687 Peptidase dimerisation domain EP12_18750 PF01546 Peptidase family M20/M25/M40 EP12_18760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_18760 PF03466 LysR substrate binding domain EP12_18780 PF04542 Sigma-70 region 2 EP12_18780 PF08281 Sigma-70, region 4 EP12_18805 PF00472 RF-1 domain EP12_18810 PF08386 TAP-like protein EP12_18810 PF00561 alpha/beta hydrolase fold EP12_18835 PF00593 TonB dependent receptor EP12_18835 PF07715 TonB-dependent Receptor Plug Domain EP12_18845 PF01048 Phosphorylase superfamily EP12_18860 PF00107 Zinc-binding dehydrogenase EP12_18860 PF16884 N-terminal domain of oxidoreductase EP12_18865 PF00072 Response regulator receiver domain EP12_18865 PF00990 Diguanylate cyclase, GGDEF domain EP12_18895 PF01063 Amino-transferase class IV EP12_18905 PF00474 Sodium:solute symporter family EP12_18925 PF00248 Aldo/keto reductase family EP12_18930 PF02668 Taurine catabolism dioxygenase TauD, TfdA family EP12_18935 PF03601 Conserved hypothetical protein 698 EP12_18970 PF00455 DeoR C terminal sensor domain EP12_18970 PF08220 DeoR-like helix-turn-helix domain EP12_18975 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EP12_18975 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EP12_18995 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EP12_18995 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EP12_19000 PF12833 Helix-turn-helix domain EP12_19025 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch EP12_19030 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EP12_19030 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EP12_19080 PF03626 Prokaryotic Cytochrome C oxidase subunit IV EP12_19090 PF00115 Cytochrome C and Quinol oxidase polypeptide I EP12_19105 PF00355 Rieske [2Fe-2S] domain EP12_19105 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP12_19110 PF00111 2Fe-2S iron-sulfur cluster binding domain EP12_19110 PF00175 Oxidoreductase NAD-binding domain EP12_19145 PF00857 Isochorismatase family EP12_19150 PF00296 Luciferase-like monooxygenase EP12_19165 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase EP12_19175 PF02668 Taurine catabolism dioxygenase TauD, TfdA family EP12_19200 PF03091 CutA1 divalent ion tolerance protein EP12_19215 PF00364 Biotin-requiring enzyme EP12_19220 PF00289 Biotin carboxylase, N-terminal domain EP12_19220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP12_19220 PF02785 Biotin carboxylase C-terminal domain EP12_19255 PF01355 High potential iron-sulfur protein EP12_19260 PF01425 Amidase EP12_19285 PF02142 MGS-like domain EP12_19285 PF01808 AICARFT/IMPCHase bienzyme EP12_19295 PF02843 Phosphoribosylglycinamide synthetase, C domain EP12_19295 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EP12_19295 PF02844 Phosphoribosylglycinamide synthetase, N domain EP12_19300 PF06452 Carbohydrate family 9 binding domain-like EP12_19300 PF02018 Carbohydrate binding domain EP12_19300 PF00331 Glycosyl hydrolase family 10 EP12_19300 PF00395 S-layer homology domain EP12_19325 PF00486 Transcriptional regulatory protein, C terminal EP12_19325 PF00072 Response regulator receiver domain EP12_19345 PF01430 Hsp33 protein EP12_19350 PF01479 S4 domain EP12_19375 PF07963 Prokaryotic N-terminal methylation motif EP12_19375 PF08334 Type II secretion system (T2SS), protein G EP12_19380 PF12019 Type II transport protein GspH EP12_19380 PF07963 Prokaryotic N-terminal methylation motif EP12_19390 PF11612 Type II secretion system (T2SS), protein J EP12_19390 PF07963 Prokaryotic N-terminal methylation motif EP12_19405 PF04612 Type II secretion system (T2SS), protein M EP12_19420 PF00171 Aldehyde dehydrogenase family EP12_19425 PF01931 Protein of unknown function DUF84 EP12_19430 PF13419 Haloacid dehalogenase-like hydrolase EP12_19455 PF04349 Periplasmic glucan biosynthesis protein, MdoG EP12_19465 PF06794 Uncharacterised protein family (UPF0270) EP12_19495 PF04102 SlyX EP12_19505 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EP12_19505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP12_19515 PF03449 Transcription elongation factor, N-terminal EP12_19515 PF01272 Transcription elongation factor, GreA/GreB, C-term EP12_19540 PF00156 Phosphoribosyl transferase domain EP12_19550 PF01521 Iron-sulphur cluster biosynthesis EP12_19550 PF01106 NifU-like domain EP12_19560 PF01177 Asp/Glu/Hydantoin racemase EP12_19565 PF13649 Methyltransferase domain EP12_19580 PF01554 MatE EP12_19595 PF02630 SCO1/SenC EP12_19600 PF01040 UbiA prenyltransferase family EP12_19645 PF00717 Peptidase S24-like EP12_19645 PF01726 LexA DNA binding domain EP12_19650 PF00593 TonB dependent receptor EP12_19650 PF07715 TonB-dependent Receptor Plug Domain EP12_19665 PF00291 Pyridoxal-phosphate dependent enzyme EP12_19665 PF00585 C-terminal regulatory domain of Threonine dehydratase EP12_19675 PF03458 UPF0126 domain EP12_19685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP12_19685 PF03466 LysR substrate binding domain EP12_19695 PF07690 Major Facilitator Superfamily EP12_19700 PF07244 Surface antigen variable number repeat EP12_19700 PF17243 POTRA domain TamA domain 1 EP12_19700 PF01103 Surface antigen EP12_19725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP12_19725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP12_19800 PF01206 Sulfurtransferase TusA EP12_19805 PF00156 Phosphoribosyl transferase domain EP12_19840 PF00589 Phage integrase family EP12_19845 PF04002 RadC-like JAB domain EP12_19890 PF13361 UvrD-like helicase C-terminal domain EP12_19890 PF00580 UvrD/REP helicase N-terminal domain EP12_19985 PF00356 Bacterial regulatory proteins, lacI family EP12_19995 PF00691 OmpA family EP12_20000 PF11871 Domain of unknown function (DUF3391) EP12_20000 PF01966 HD domain EP12_20020 PF02798 Glutathione S-transferase, N-terminal domain EP12_20020 PF00043 Glutathione S-transferase, C-terminal domain EP12_20035 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EP12_20035 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain EP12_20040 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP12_20040 PF02874 ATP synthase alpha/beta family, beta-barrel domain EP12_20045 PF00231 ATP synthase EP12_20050 PF02874 ATP synthase alpha/beta family, beta-barrel domain EP12_20050 PF00306 ATP synthase alpha/beta chain, C terminal domain EP12_20050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP12_20060 PF00430 ATP synthase B/B' CF(0) EP12_20065 PF00137 ATP synthase subunit C EP12_20070 PF00119 ATP synthase A chain EP12_20080 PF02195 ParB-like nuclease domain EP12_20080 PF17762 HTH domain found in ParB protein EP12_20085 PF13614 AAA domain EP12_20090 PF02527 rRNA small subunit methyltransferase G EP12_20095 PF01134 Glucose inhibited division protein A EP12_20095 PF13932 GidA associated domain EP12_20110 PF00258 Flavodoxin EP12_20115 PF10396 GTP-binding protein TrmE N-terminus EP12_20115 PF12631 MnmE helical domain EP12_20115 PF01926 50S ribosome-binding GTPase EP12_20120 PF04461 Protein of unknown function (DUF520) EP12_20125 PF02096 60Kd inner membrane protein EP12_20125 PF14849 YidC periplasmic domain EP12_20130 PF00825 Ribonuclease P