EP12_00005 SM00382 ATPases associated with a variety of cellular activities EP12_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain EP12_00010 SM00480 DNA polymerase III beta subunit EP12_00030 SM00836 DALR anticodon binding domain EP12_00070 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs EP12_00070 SM00474 3'-5' exonuclease EP12_00070 SM00475 5'-3' exonuclease EP12_00070 SM00482 DNA polymerase A domain EP12_00105 SM00257 Lysin motif EP12_00205 SM00481 DNA polymerase alpha chain like domain EP12_00305 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain EP12_00305 SM01232 EP12_00305 EP12_00335 SM00052 Putative diguanylate phosphodiesterase EP12_00335 SM00267 diguanylate cyclase EP12_00345 SM00829 Enoylreductase EP12_00350 SM00450 Rhodanese Homology Domain EP12_00385 SM00052 Putative diguanylate phosphodiesterase EP12_00385 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. EP12_00385 SM00267 diguanylate cyclase EP12_00425 SM00487 DEAD-like helicases superfamily EP12_00425 SM00490 helicase superfamily c-terminal domain EP12_00440 SM00382 ATPases associated with a variety of cellular activities EP12_00470 SM00849 Metallo-beta-lactamase superfamily EP12_00490 SM00876 Biotin and Thiamin Synthesis associated domain EP12_00555 SM00729 Elongator protein 3, MiaB family, Radical SAM EP12_00630 SM00267 diguanylate cyclase EP12_00640 SM00072 Guanylate kinase homologues. EP12_00645 SM01409 EP12_00645 EP12_00650 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. EP12_00650 SM00954 Region found in RelA / SpoT proteins EP12_00665 SM00487 DEAD-like helicases superfamily EP12_00665 SM00490 helicase superfamily c-terminal domain EP12_00700 SM00382 ATPases associated with a variety of cellular activities EP12_00735 SM00421 helix_turn_helix, Lux Regulon EP12_00735 SM00448 cheY-homologous receiver domain EP12_00775 SM00387 Histidine kinase-like ATPases EP12_00775 SM00388 His Kinase A (phosphoacceptor) domain EP12_00775 SM00448 cheY-homologous receiver domain EP12_00800 SM00382 ATPases associated with a variety of cellular activities EP12_00825 SM00988 UreE urease accessory protein, N-terminal domain EP12_00850 SM00267 diguanylate cyclase EP12_00875 SM00271 DnaJ molecular chaperone homology domain EP12_00915 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_00935 SM00052 Putative diguanylate phosphodiesterase EP12_00935 SM00267 diguanylate cyclase EP12_00950 SM00341 Helicase and RNase D C-terminal EP12_00950 SM00487 DEAD-like helicases superfamily EP12_00950 SM00490 helicase superfamily c-terminal domain EP12_00950 SM00956 EP12_00950 EP12_00960 SM00924 MgtE intracellular N domain EP12_00970 SM00267 diguanylate cyclase EP12_00970 SM00448 cheY-homologous receiver domain EP12_00980 SM00971 Serine acetyltransferase, N-terminal EP12_01020 SM00014 Acid phosphatase homologues EP12_01065 SM01321 EP12_01065 EP12_01100 SM00354 helix_turn _helix lactose operon repressor EP12_01170 SM00974 EP12_01170 EP12_01175 SM00857 Resolvase, N terminal domain EP12_01185 SM00382 ATPases associated with a variety of cellular activities EP12_01275 SM00316 Ribosomal protein S1-like RNA-binding domain EP12_01305 SM00342 helix_turn_helix, arabinose operon control protein EP12_01315 SM00448 cheY-homologous receiver domain EP12_01315 SM00862 Transcriptional regulatory protein, C terminal EP12_01320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain EP12_01320 SM00387 Histidine kinase-like ATPases EP12_01345 SM00478 endonuclease III EP12_01345 SM00525 EP12_01345 EP12_01375 SM00487 DEAD-like helicases superfamily EP12_01440 SM00382 ATPases associated with a variety of cellular activities EP12_01530 SM00448 cheY-homologous receiver domain EP12_01530 SM00862 Transcriptional regulatory protein, C terminal EP12_01575 SM00422 helix_turn_helix, mercury resistance EP12_01720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain EP12_01720 SM00387 Histidine kinase-like ATPases EP12_01720 SM00388 His Kinase A (phosphoacceptor) domain EP12_01725 SM00448 cheY-homologous receiver domain EP12_01725 SM00862 Transcriptional regulatory protein, C terminal EP12_01740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_01745 SM00448 cheY-homologous receiver domain EP12_01750 SM00073 Histidine Phosphotransfer domain EP12_01750 SM00260 Two component signalling adaptor domain EP12_01750 SM00387 Histidine kinase-like ATPases EP12_01750 SM01231 EP12_01750 EP12_01755 SM00260 Two component signalling adaptor domain EP12_01760 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) EP12_01760 SM00091 PAS domain EP12_01760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_01765 SM00138 Methyltransferase, chemotaxis proteins EP12_01775 SM00448 cheY-homologous receiver domain EP12_01875 SM00782 PhnA Zinc-Ribbon EP12_01885 SM00487 DEAD-like helicases superfamily EP12_01885 SM00490 helicase superfamily c-terminal domain EP12_01910 SM00052 Putative diguanylate phosphodiesterase EP12_01915 SM00382 ATPases associated with a variety of cellular activities EP12_01930 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. EP12_01930 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. EP12_01945 SM00649 Ribosomal protein L11/L12 EP12_01970 SM00663 RNA polymerase I subunit A N-terminus EP12_02025 SM00855 Phosphoglycerate mutase family EP12_02035 SM00382 ATPases associated with a variety of cellular activities EP12_02040 SM01403 EP12_02040 EP12_02060 SM01382 EP12_02060 EP12_02060 SM01383 EP12_02060 EP12_02075 SM00322 K homology RNA-binding domain EP12_02120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_02120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain EP12_02190 SM00342 helix_turn_helix, arabinose operon control protein EP12_02205 SM00938 Nitrogen regulatory protein P-II EP12_02260 SM00434 DNA Topoisomerase IV EP12_02270 SM00052 Putative diguanylate phosphodiesterase EP12_02270 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) EP12_02270 SM00267 diguanylate cyclase EP12_02275 SM01150 EP12_02275 EP12_02350 SM00965 Secretin and TonB N terminus short domain EP12_02370 SM00842 Cell division protein FtsA EP12_02380 SM00919 Malic enzyme, NAD binding domain EP12_02380 SM01274 EP12_02380 EP12_02395 SM01060 EP12_02395 EP12_02405 SM00028 Tetratricopeptide repeats EP12_02415 SM00052 Putative diguanylate phosphodiesterase EP12_02445 SM00859 Semialdehyde dehydrogenase, NAD binding domain EP12_02450 SM00851 MGS-like domain EP12_02475 SM00448 cheY-homologous receiver domain EP12_02475 SM00862 Transcriptional regulatory protein, C terminal EP12_02515 SM00450 Rhodanese Homology Domain EP12_02560 SM00479 EP12_02560 EP12_02635 SM00267 diguanylate cyclase EP12_02640 SM01004 Delta-aminolevulinic acid dehydratase EP12_02650 SM00487 DEAD-like helicases superfamily EP12_02650 SM00490 helicase superfamily c-terminal domain EP12_02665 SM00357 Cold shock protein domain EP12_02665 SM00382 ATPases associated with a variety of cellular activities EP12_02665 SM00959 Rho termination factor, N-terminal domain EP12_02675 SM00387 Histidine kinase-like ATPases EP12_02675 SM00388 His Kinase A (phosphoacceptor) domain EP12_02675 SM00448 cheY-homologous receiver domain EP12_02685 SM01001 AIR carboxylase EP12_02730 SM00788 Adenylosuccinate synthetase EP12_02775 SM01005 Alanine racemase, C-terminal domain EP12_02800 SM00062 Bacterial periplasmic substrate-binding proteins EP12_03040 SM00257 Lysin motif EP12_03085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_03085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain EP12_03085 SM01049 EP12_03085 EP12_03110 SM00448 cheY-homologous receiver domain EP12_03110 SM00862 Transcriptional regulatory protein, C terminal EP12_03115 SM00388 His Kinase A (phosphoacceptor) domain EP12_03120 SM00287 Bacterial SH3 domain homologues EP12_03145 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. EP12_03165 SM00448 cheY-homologous receiver domain EP12_03175 SM00387 Histidine kinase-like ATPases EP12_03175 SM00388 His Kinase A (phosphoacceptor) domain EP12_03175 SM00448 cheY-homologous receiver domain EP12_03225 SM00487 DEAD-like helicases superfamily EP12_03225 SM00490 helicase superfamily c-terminal domain EP12_03230 SM00028 Tetratricopeptide repeats EP12_03275 SM00052 Putative diguanylate phosphodiesterase EP12_03275 SM00091 PAS domain EP12_03275 SM00138 Methyltransferase, chemotaxis proteins EP12_03275 SM00267 diguanylate cyclase EP12_03280 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. EP12_03310 SM00841 Elongation factor P, C-terminal EP12_03310 SM01185 EP12_03310 EP12_03355 SM01012 EP12_03355 EP12_03380 SM00926 Molybdopterin oxidoreductase Fe4S4 domain EP12_03415 SM00382 ATPases associated with a variety of cellular activities EP12_03475 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain EP12_03480 SM01007 Class II Aldolase and Adducin N-terminal domain EP12_03525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_03525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain EP12_03535 SM00400 zinc finger EP12_03535 SM00493 EP12_03535 EP12_03535 SM00766 DNA primase DnaG DnaB-binding EP12_03555 SM01207 EP12_03555 EP12_03560 SM00905 Dihydroneopterin aldolase EP12_03595 SM00530 Helix-turn-helix XRE-family like proteins EP12_03605 SM00387 Histidine kinase-like ATPases EP12_03610 SM00448 cheY-homologous receiver domain EP12_03610 SM00862 Transcriptional regulatory protein, C terminal EP12_03615 SM00387 Histidine kinase-like ATPases EP12_03615 SM00388 His Kinase A (phosphoacceptor) domain EP12_03625 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. EP12_03630 SM00710 Parallel beta-helix repeats EP12_03665 SM00028 Tetratricopeptide repeats EP12_03680 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) EP12_03680 SM00091 PAS domain EP12_03680 SM00387 Histidine kinase-like ATPases EP12_03680 SM00388 His Kinase A (phosphoacceptor) domain EP12_03680 SM00448 cheY-homologous receiver domain EP12_03730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_03730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain EP12_03745 SM00650 Ribosomal RNA adenine dimethylases EP12_03770 SM00271 DnaJ molecular chaperone homology domain EP12_03815 SM00954 Region found in RelA / SpoT proteins EP12_03850 SM00965 Secretin and TonB N terminus short domain EP12_03855 SM00631 EP12_03855 EP12_03895 SM00862 Transcriptional regulatory protein, C terminal EP12_03900 SM00924 MgtE intracellular N domain EP12_03930 SM00382 ATPases associated with a variety of cellular activities EP12_03960 SM00382 ATPases associated with a variety of cellular activities EP12_03995 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. EP12_04005 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. EP12_04045 SM01321 EP12_04045 EP12_04085 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) EP12_04085 SM00091 PAS domain EP12_04085 SM00387 Histidine kinase-like ATPases EP12_04085 SM00388 His Kinase A (phosphoacceptor) domain EP12_04085 SM00448 cheY-homologous receiver domain EP12_04095 SM00342 helix_turn_helix, arabinose operon control protein EP12_04125 SM00861 Transketolase, pyrimidine binding domain EP12_04130 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP12_04170 SM00382 ATPases associated with a variety of cellular activities EP12_04205 SM00347 helix_turn_helix multiple antibiotic resistance protein EP12_04225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_04255 SM00342 helix_turn_helix, arabinose operon control protein EP12_04370 SM00450 Rhodanese Homology Domain EP12_04380 SM01144 EP12_04380 EP12_04435 SM00448 cheY-homologous receiver domain EP12_04440 SM00091 PAS domain EP12_04460 SM00729 Elongator protein 3, MiaB family, Radical SAM EP12_04470 SM00487 DEAD-like helicases superfamily EP12_04470 SM00490 helicase superfamily c-terminal domain EP12_04480 SM00382 ATPases associated with a variety of cellular activities EP12_04505 SM01329 EP12_04505 EP12_04510 SM00917 LeuA allosteric (dimerisation) domain EP12_04525 SM01192 EP12_04525 EP12_04525 SM01193 EP12_04525 EP12_04545 SM00382 ATPases associated with a variety of cellular activities EP12_04560 SM00382 ATPases associated with a variety of cellular activities EP12_04580 SM00382 ATPases associated with a variety of cellular activities EP12_04630 SM00822 EP12_04630 EP12_04650 SM00382 ATPases associated with a variety of cellular activities EP12_04690 SM00278 Helix-hairpin-helix DNA-binding motif class 1 EP12_04695 SM01329 EP12_04695 EP12_04715 SM00267 diguanylate cyclase EP12_04820 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. EP12_04875 SM00935 Outer membrane protein (OmpH-like) EP12_04915 SM00267 diguanylate cyclase EP12_04935 SM00062 Bacterial periplasmic substrate-binding proteins EP12_04940 SM01211 EP12_04940 EP12_04980 SM00858 EP12_04980 EP12_04985 SM00260 Two component signalling adaptor domain EP12_04985 SM00448 cheY-homologous receiver domain EP12_04990 SM00138 Methyltransferase, chemotaxis proteins EP12_05035 SM00047 Lysozyme subfamily 2 EP12_05110 SM00858 EP12_05110 EP12_05130 SM00822 EP12_05130 EP12_05265 SM00382 ATPases associated with a variety of cellular activities EP12_05270 SM00387 Histidine kinase-like ATPases EP12_05270 SM00388 His Kinase A (phosphoacceptor) domain EP12_05275 SM00382 ATPases associated with a variety of cellular activities EP12_05275 SM00448 cheY-homologous receiver domain EP12_05300 SM00382 ATPases associated with a variety of cellular activities EP12_05360 SM00382 ATPases associated with a variety of cellular activities EP12_05360 SM00962 SRP54-type protein, GTPase domain EP12_05375 SM00448 cheY-homologous receiver domain EP12_05385 SM00073 Histidine Phosphotransfer domain EP12_05385 SM00260 Two component signalling adaptor domain EP12_05385 SM00387 Histidine kinase-like ATPases EP12_05385 SM01231 EP12_05385 EP12_05390 SM00448 cheY-homologous receiver domain EP12_05400 SM00260 Two component signalling adaptor domain EP12_05405 SM00260 Two component signalling adaptor domain EP12_05430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_05430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain EP12_05450 SM00947 Carbonic anhydrase EP12_05475 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain EP12_05520 SM00382 ATPases associated with a variety of cellular activities EP12_05540 SM00382 ATPases associated with a variety of cellular activities EP12_05580 SM00344 helix_turn_helix ASNC type EP12_05585 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EP12_05640 SM00028 Tetratricopeptide repeats EP12_05720 SM00267 diguanylate cyclase EP12_05855 SM00937 EP12_05855 EP12_05900 SM00382 ATPases associated with a variety of cellular activities EP12_05915 SM00382 ATPases associated with a variety of cellular activities EP12_05915 SM00448 cheY-homologous receiver domain EP12_05930 SM00463 Small MutS-related domain EP12_06005 SM00479 EP12_06005 EP12_06025 SM00357 Cold shock protein domain EP12_06035 SM00267 diguanylate cyclase EP12_06040 SM00862 Transcriptional regulatory protein, C terminal EP12_06140 SM00900 EP12_06140 EP12_06180 SM00487 DEAD-like helicases superfamily EP12_06180 SM00490 helicase superfamily c-terminal domain EP12_06295 SM00028 Tetratricopeptide repeats EP12_06300 SM00327 von Willebrand factor (vWF) type A domain EP12_06355 SM00855 Phosphoglycerate mutase family EP12_06365 SM01091 Transporter associated domain EP12_06380 SM00382 ATPases associated with a variety of cellular activities EP12_06380 SM00962 SRP54-type protein, GTPase domain EP12_06380 SM00963 SRP54-type protein, helical bundle domain EP12_06430 SM00382 ATPases associated with a variety of cellular activities EP12_06485 SM00830 Chorismate mutase type II EP12_06490 SM00830 Chorismate mutase type II EP12_06500 SM00448 cheY-homologous receiver domain EP12_06535 SM00387 Histidine kinase-like ATPases EP12_06535 SM00388 His Kinase A (phosphoacceptor) domain EP12_06545 SM00382 ATPases associated with a variety of cellular activities EP12_06545 SM00448 cheY-homologous receiver domain EP12_06570 SM00278 Helix-hairpin-helix DNA-binding motif class 1 EP12_06575 SM00382 ATPases associated with a variety of cellular activities EP12_06610 SM00028 Tetratricopeptide repeats EP12_06970 SM00028 Tetratricopeptide repeats EP12_06970 SM00387 Histidine kinase-like ATPases EP12_06970 SM00388 His Kinase A (phosphoacceptor) domain EP12_06970 SM00448 cheY-homologous receiver domain EP12_06980 SM00859 Semialdehyde dehydrogenase, NAD binding domain EP12_06995 SM01060 EP12_06995 EP12_07010 SM00829 Enoylreductase EP12_07015 SM00116 Domain in cystathionine beta-synthase and other proteins. EP12_07045 SM00267 diguanylate cyclase EP12_07070 SM00237 Domains in Na-Ca exchangers and integrin-beta4 EP12_07075 SM00237 Domains in Na-Ca exchangers and integrin-beta4 EP12_07085 SM00530 Helix-turn-helix XRE-family like proteins EP12_07095 SM00342 helix_turn_helix, arabinose operon control protein EP12_07145 SM00729 Elongator protein 3, MiaB family, Radical SAM EP12_07145 SM00876 Biotin and Thiamin Synthesis associated domain EP12_07170 SM00226 Low molecular weight phosphatase family EP12_07185 SM00382 ATPases associated with a variety of cellular activities EP12_07200 SM00448 cheY-homologous receiver domain EP12_07200 SM00850 LytTr DNA-binding domain EP12_07210 SM00382 ATPases associated with a variety of cellular activities EP12_07215 SM00729 Elongator protein 3, MiaB family, Radical SAM EP12_07225 SM00028 Tetratricopeptide repeats EP12_07225 SM00448 cheY-homologous receiver domain EP12_07310 SM00382 ATPases associated with a variety of cellular activities EP12_07325 SM00905 Dihydroneopterin aldolase EP12_07335 SM00387 Histidine kinase-like ATPases EP12_07340 SM00448 cheY-homologous receiver domain EP12_07340 SM00862 Transcriptional regulatory protein, C terminal EP12_07390 SM00481 DNA polymerase alpha chain like domain EP12_07410 SM00363 S4 RNA-binding domain EP12_07420 SM01266 EP12_07420 EP12_07495 SM00421 helix_turn_helix, Lux Regulon EP12_07495 SM00448 cheY-homologous receiver domain EP12_07520 SM00271 DnaJ molecular chaperone homology domain EP12_07530 SM00052 Putative diguanylate phosphodiesterase EP12_07530 SM00091 PAS domain EP12_07530 SM00267 diguanylate cyclase EP12_07545 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain EP12_07550 SM00851 MGS-like domain EP12_07550 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EP12_07560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_07560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain EP12_07590 SM00116 Domain in cystathionine beta-synthase and other proteins. EP12_07590 SM01091 Transporter associated domain EP12_07620 SM00729 Elongator protein 3, MiaB family, Radical SAM EP12_07660 SM00903 Flavin reductase like domain EP12_07775 SM00937 EP12_07775 EP12_07825 SM00838 Elongation factor G C-terminus EP12_07825 SM00889 Elongation factor G, domain IV EP12_07835 SM01116 EP12_07835 EP12_07840 SM00220 Serine/Threonine protein kinases, catalytic domain EP12_07840 SM00331 Sigma factor PP2C-like phosphatases EP12_07840 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain EP12_07865 SM00052 Putative diguanylate phosphodiesterase EP12_07865 SM00267 diguanylate cyclase EP12_08015 SM00864 Tubulin/FtsZ family, GTPase domain EP12_08015 SM00865 Tubulin/FtsZ family, C-terminal domain EP12_08025 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) EP12_08025 SM00267 diguanylate cyclase EP12_08055 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EP12_08060 SM01092 CO dehydrogenase flavoprotein C-terminal domain EP12_08095 SM00052 Putative diguanylate phosphodiesterase EP12_08095 SM00091 PAS domain EP12_08095 SM00267 diguanylate cyclase EP12_08095 SM00448 cheY-homologous receiver domain EP12_08105 SM00387 Histidine kinase-like ATPases EP12_08105 SM00388 His Kinase A (phosphoacceptor) domain EP12_08105 SM00448 cheY-homologous receiver domain EP12_08210 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain EP12_08360 SM00873 B3/4 domain EP12_08360 SM00874 tRNA synthetase B5 domain EP12_08360 SM00896 Ferredoxin-fold anticodon binding domain EP12_08365 SM00411 bacterial (prokaryotic) histone like domain EP12_08400 SM00487 DEAD-like helicases superfamily EP12_08400 SM00490 helicase superfamily c-terminal domain EP12_08400 SM00982 EP12_08400 EP12_08400 SM01058 CarD-like/TRCF domain EP12_08490 SM00878 Biotin carboxylase C-terminal domain EP12_08510 SM00422 helix_turn_helix, mercury resistance EP12_08520 SM00062 Bacterial periplasmic substrate-binding proteins EP12_08520 SM00267 diguanylate cyclase EP12_08530 SM00479 EP12_08530 EP12_08535 SM00116 Domain in cystathionine beta-synthase and other proteins. EP12_08555 SM00267 diguanylate cyclase EP12_08585 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase EP12_08590 SM00829 Enoylreductase EP12_08600 SM00479 EP12_08600 EP12_08635 SM00382 ATPases associated with a variety of cellular activities EP12_08650 SM00634 Bacterial Ig-like domain (group 1) EP12_08665 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain EP12_08665 SM00437 Bacterial DNA topoisomerase I DNA-binding domain EP12_08665 SM00493 EP12_08665 EP12_08690 SM00587 ZnF_C4 abd HLH domain containing kinases domain EP12_08700 SM00363 S4 RNA-binding domain EP12_08735 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. EP12_08740 SM00822 EP12_08740 EP12_08750 SM00825 Beta-ketoacyl synthase EP12_08855 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) EP12_08855 SM00091 PAS domain EP12_08855 SM00387 Histidine kinase-like ATPases EP12_08855 SM00388 His Kinase A (phosphoacceptor) domain EP12_08855 SM00448 cheY-homologous receiver domain EP12_08860 SM00448 cheY-homologous receiver domain EP12_08860 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. EP12_08870 SM00316 Ribosomal protein S1-like RNA-binding domain EP12_08890 SM01387 EP12_08890 EP12_08915 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. EP12_08920 SM00028 Tetratricopeptide repeats EP12_08920 SM00448 cheY-homologous receiver domain EP12_08980 SM00729 Elongator protein 3, MiaB family, Radical SAM EP12_09020 SM00382 ATPases associated with a variety of cellular activities EP12_09040 SM00829 Enoylreductase EP12_09075 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_09095 SM00382 ATPases associated with a variety of cellular activities EP12_09135 SM00347 helix_turn_helix multiple antibiotic resistance protein EP12_09150 SM00028 Tetratricopeptide repeats EP12_09165 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EP12_09190 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. EP12_09195 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain EP12_09225 SM00357 Cold shock protein domain EP12_09235 SM00382 ATPases associated with a variety of cellular activities EP12_09235 SM01086 C-terminal, D2-small domain, of ClpB protein EP12_09240 SM00316 Ribosomal protein S1-like RNA-binding domain EP12_09265 SM00731 SprT homologues. EP12_09290 SM00870 EP12_09290 EP12_09295 SM00267 diguanylate cyclase EP12_09300 SM00729 Elongator protein 3, MiaB family, Radical SAM EP12_09315 SM00936 Penicillin-binding protein 5, C-terminal domain EP12_09375 SM01103 EP12_09375 EP12_09385 SM00382 ATPases associated with a variety of cellular activities EP12_09430 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EP12_09435 SM00046 Diacylglycerol kinase catalytic domain (presumed) EP12_09435 SM00195 Dual specificity phosphatase, catalytic domain EP12_09480 SM00507 HNH nucleases EP12_09490 SM00316 Ribosomal protein S1-like RNA-binding domain EP12_09490 SM00322 K homology RNA-binding domain EP12_09540 SM00771 ZipA, C-terminal domain (FtsZ-binding) EP12_09545 SM00278 Helix-hairpin-helix DNA-binding motif class 1 EP12_09545 SM00292 breast cancer carboxy-terminal domain EP12_09545 SM00532 Ligase N family EP12_09560 SM00382 ATPases associated with a variety of cellular activities EP12_09585 SM00729 Elongator protein 3, MiaB family, Radical SAM EP12_09730 SM00861 Transketolase, pyrimidine binding domain EP12_09745 SM00881 CoA binding domain EP12_09785 SM00642 Alpha-amylase domain EP12_09790 SM00642 Alpha-amylase domain EP12_09800 SM00642 Alpha-amylase domain EP12_09925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. EP12_09945 SM00448 cheY-homologous receiver domain EP12_09945 SM00850 LytTr DNA-binding domain EP12_09980 SM00487 DEAD-like helicases superfamily EP12_09995 SM00671 Sel1-like repeats. EP12_10005 SM00450 Rhodanese Homology Domain EP12_10005 SM00849 Metallo-beta-lactamase superfamily EP12_10030 SM00382 ATPases associated with a variety of cellular activities EP12_10065 SM00028 Tetratricopeptide repeats EP12_10065 SM00448 cheY-homologous receiver domain EP12_10080 SM00054 EF-hand, calcium binding motif EP12_10085 SM00363 S4 RNA-binding domain EP12_10095 SM00052 Putative diguanylate phosphodiesterase EP12_10095 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. EP12_10095 SM00267 diguanylate cyclase EP12_10100 SM00487 DEAD-like helicases superfamily EP12_10100 SM00490 helicase superfamily c-terminal domain EP12_10105 SM00882 Coenzyme A transferase EP12_10110 SM00882 Coenzyme A transferase EP12_10135 SM00387 Histidine kinase-like ATPases EP12_10170 SM00267 diguanylate cyclase EP12_10200 SM00861 Transketolase, pyrimidine binding domain EP12_10215 SM00220 Serine/Threonine protein kinases, catalytic domain EP12_10240 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. EP12_10250 SM00945 ProQ/FINO family EP12_10255 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. EP12_10255 SM00245 tail specific protease EP12_10410 SM00422 helix_turn_helix, mercury resistance EP12_10505 SM00342 helix_turn_helix, arabinose operon control protein EP12_10510 SM00422 helix_turn_helix, mercury resistance EP12_10590 SM00950 EP12_10590 EP12_10600 SM00422 helix_turn_helix, mercury resistance EP12_10655 SM00530 Helix-turn-helix XRE-family like proteins EP12_10680 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain EP12_10680 SM00387 Histidine kinase-like ATPases EP12_10680 SM00388 His Kinase A (phosphoacceptor) domain EP12_10685 SM00448 cheY-homologous receiver domain EP12_10685 SM00862 Transcriptional regulatory protein, C terminal EP12_10720 SM00981 EP12_10720 EP12_10730 SM00382 ATPases associated with a variety of cellular activities EP12_10870 SM00100 Cyclic nucleotide-monophosphate binding domain EP12_10870 SM00419 helix_turn_helix, cAMP Regulatory protein EP12_10915 SM00450 Rhodanese Homology Domain EP12_10925 SM01144 EP12_10925 EP12_11005 SM00278 Helix-hairpin-helix DNA-binding motif class 1 EP12_11005 SM00465 GIY-YIG type nucleases (URI domain) EP12_11010 SM00421 helix_turn_helix, Lux Regulon EP12_11010 SM00448 cheY-homologous receiver domain EP12_11115 SM00382 ATPases associated with a variety of cellular activities EP12_11125 SM00843 EP12_11125 EP12_11130 SM00344 helix_turn_helix ASNC type EP12_11135 SM01002 Alanine dehydrogenase/PNT, C-terminal domain EP12_11135 SM01003 Alanine dehydrogenase/PNT, N-terminal domain EP12_11140 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family EP12_11145 SM00028 Tetratricopeptide repeats EP12_11160 SM00411 bacterial (prokaryotic) histone like domain EP12_11165 SM00316 Ribosomal protein S1-like RNA-binding domain EP12_11255 SM01130 EP12_11255 EP12_11340 SM00670 Large family of predicted nucleotide-binding domains EP12_11380 SM00421 helix_turn_helix, Lux Regulon EP12_11380 SM00448 cheY-homologous receiver domain EP12_11410 SM00642 Alpha-amylase domain EP12_11420 SM00852 Probable molybdopterin binding domain EP12_11510 SM00563 Phosphate acyltransferases EP12_11560 SM00342 helix_turn_helix, arabinose operon control protein EP12_11595 SM00893 Electron transfer flavoprotein domain EP12_11600 SM00893 Electron transfer flavoprotein domain EP12_11615 SM00528 Domain in histone-like proteins of HNS family EP12_11635 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_11635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain EP12_11650 SM00797 Allophanate hydrolase subunit 2 EP12_11655 SM00796 Allophanate hydrolase subunit 1 EP12_11690 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. EP12_11695 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. EP12_11700 SM00421 helix_turn_helix, Lux Regulon EP12_11755 SM00267 diguanylate cyclase EP12_11800 SM00829 Enoylreductase EP12_11815 SM00855 Phosphoglycerate mutase family EP12_11835 SM00729 Elongator protein 3, MiaB family, Radical SAM EP12_11870 SM00852 Probable molybdopterin binding domain EP12_11885 SM01321 EP12_11885 EP12_11960 SM00052 Putative diguanylate phosphodiesterase EP12_11960 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) EP12_11960 SM00267 diguanylate cyclase EP12_11965 SM00849 Metallo-beta-lactamase superfamily EP12_12010 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor EP12_12030 SM00382 ATPases associated with a variety of cellular activities EP12_12030 SM00448 cheY-homologous receiver domain EP12_12040 SM00387 Histidine kinase-like ATPases EP12_12040 SM00388 His Kinase A (phosphoacceptor) domain EP12_12045 SM00448 cheY-homologous receiver domain EP12_12120 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP12_12135 SM01350 EP12_12135 EP12_12140 SM00642 Alpha-amylase domain EP12_12210 SM01321 EP12_12210 EP12_12220 SM00749 bacterial OsmY and nodulation domain EP12_12245 SM00387 Histidine kinase-like ATPases EP12_12245 SM00388 His Kinase A (phosphoacceptor) domain EP12_12250 SM00448 cheY-homologous receiver domain EP12_12250 SM00862 Transcriptional regulatory protein, C terminal EP12_12310 SM00354 helix_turn _helix lactose operon repressor EP12_12315 SM00858 EP12_12315 EP12_12350 SM00710 Parallel beta-helix repeats EP12_12390 SM00382 ATPases associated with a variety of cellular activities EP12_12405 SM00354 helix_turn _helix lactose operon repressor EP12_12410 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain EP12_12430 SM00052 Putative diguanylate phosphodiesterase EP12_12430 SM00267 diguanylate cyclase EP12_12455 SM00448 cheY-homologous receiver domain EP12_12455 SM00862 Transcriptional regulatory protein, C terminal EP12_12460 SM00387 Histidine kinase-like ATPases EP12_12460 SM00388 His Kinase A (phosphoacceptor) domain EP12_12470 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. EP12_12505 SM00849 Metallo-beta-lactamase superfamily EP12_12535 SM00098 Alkaline phosphatase homologues EP12_12540 SM00098 Alkaline phosphatase homologues EP12_12560 SM00829 Enoylreductase EP12_12630 SM00100 Cyclic nucleotide-monophosphate binding domain EP12_12630 SM00419 helix_turn_helix, cAMP Regulatory protein EP12_12635 SM00825 Beta-ketoacyl synthase EP12_12660 SM00862 Transcriptional regulatory protein, C terminal EP12_12770 SM00345 helix_turn_helix gluconate operon transcriptional repressor EP12_12810 SM00341 Helicase and RNase D C-terminal EP12_12810 SM00474 3'-5' exonuclease EP12_12840 SM00487 DEAD-like helicases superfamily EP12_12840 SM00491 EP12_12840 EP12_12940 SM01321 EP12_12940 EP12_12965 SM00387 Histidine kinase-like ATPases EP12_12970 SM00493 EP12_12970 EP12_12990 SM00382 ATPases associated with a variety of cellular activities EP12_13015 SM00862 Transcriptional regulatory protein, C terminal EP12_13025 SM00091 PAS domain EP12_13025 SM00267 diguanylate cyclase EP12_13065 SM00028 Tetratricopeptide repeats EP12_13070 SM00382 ATPases associated with a variety of cellular activities EP12_13070 SM01086 C-terminal, D2-small domain, of ClpB protein EP12_13080 SM00363 S4 RNA-binding domain EP12_13150 SM00861 Transketolase, pyrimidine binding domain EP12_13215 SM00382 ATPases associated with a variety of cellular activities EP12_13250 SM00358 Double-stranded RNA binding motif EP12_13250 SM00535 Ribonuclease III family EP12_13260 SM00838 Elongation factor G C-terminus EP12_13315 SM00938 Nitrogen regulatory protein P-II EP12_13400 SM00904 Riboflavin kinase EP12_13425 SM00563 Phosphate acyltransferases EP12_13445 SM00411 bacterial (prokaryotic) histone like domain EP12_13450 SM00382 ATPases associated with a variety of cellular activities EP12_13450 SM00464 Found in ATP-dependent protease La (LON) EP12_13455 SM00382 ATPases associated with a variety of cellular activities EP12_13455 SM00994 ClpX C4-type zinc finger EP12_13455 SM01086 C-terminal, D2-small domain, of ClpB protein EP12_13540 SM00116 Domain in cystathionine beta-synthase and other proteins. EP12_13540 SM01240 EP12_13540 EP12_13560 SM00564 beta-propeller repeat EP12_13585 SM00028 Tetratricopeptide repeats EP12_13585 SM00257 Lysin motif EP12_13595 SM00562 EP12_13595 EP12_13625 SM00382 ATPases associated with a variety of cellular activities EP12_13665 SM00850 LytTr DNA-binding domain EP12_13680 SM01323 EP12_13680 EP12_13750 SM00098 Alkaline phosphatase homologues EP12_13975 SM00382 ATPases associated with a variety of cellular activities EP12_14030 SM00052 Putative diguanylate phosphodiesterase EP12_14030 SM00267 diguanylate cyclase EP12_14040 SM00354 helix_turn _helix lactose operon repressor EP12_14070 SM00460 Transglutaminase/protease-like homologues EP12_14085 SM00967 RNA 2'-O ribose methyltransferase substrate binding EP12_14095 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins EP12_14100 SM00342 helix_turn_helix, arabinose operon control protein EP12_14180 SM01092 CO dehydrogenase flavoprotein C-terminal domain EP12_14185 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EP12_14240 SM00642 Alpha-amylase domain EP12_14315 SM00965 Secretin and TonB N terminus short domain EP12_14335 SM00421 helix_turn_helix, Lux Regulon EP12_14335 SM00448 cheY-homologous receiver domain EP12_14395 SM00347 helix_turn_helix multiple antibiotic resistance protein EP12_14405 SM01322 EP12_14405 EP12_14425 SM00342 helix_turn_helix, arabinose operon control protein EP12_14435 SM00633 Glycosyl hydrolase family 10 EP12_14450 SM00633 Glycosyl hydrolase family 10 EP12_14460 SM00861 Transketolase, pyrimidine binding domain EP12_14515 SM01321 EP12_14515 EP12_14520 SM00487 DEAD-like helicases superfamily EP12_14520 SM00490 helicase superfamily c-terminal domain EP12_14545 SM00028 Tetratricopeptide repeats EP12_14545 SM00387 Histidine kinase-like ATPases EP12_14545 SM00388 His Kinase A (phosphoacceptor) domain EP12_14545 SM00448 cheY-homologous receiver domain EP12_14570 SM00387 Histidine kinase-like ATPases EP12_14570 SM00388 His Kinase A (phosphoacceptor) domain EP12_14570 SM00448 cheY-homologous receiver domain EP12_14580 SM00382 ATPases associated with a variety of cellular activities EP12_14585 SM00487 DEAD-like helicases superfamily EP12_14585 SM00490 helicase superfamily c-terminal domain EP12_14600 SM01007 Class II Aldolase and Adducin N-terminal domain EP12_14615 SM00530 Helix-turn-helix XRE-family like proteins EP12_14740 SM00422 helix_turn_helix, mercury resistance EP12_14790 SM01011 Aminopeptidase P, N-terminal domain EP12_14880 SM00345 helix_turn_helix gluconate operon transcriptional repressor EP12_14880 SM00895 EP12_14880 EP12_14940 SM00354 helix_turn _helix lactose operon repressor EP12_14995 SM00864 Tubulin/FtsZ family, GTPase domain EP12_14995 SM00865 Tubulin/FtsZ family, C-terminal domain EP12_15000 SM00842 Cell division protein FtsA EP12_15120 SM00382 ATPases associated with a variety of cellular activities EP12_15120 SM00448 cheY-homologous receiver domain EP12_15125 SM00387 Histidine kinase-like ATPases EP12_15150 SM00710 Parallel beta-helix repeats EP12_15205 SM00732 Likely ribonuclease with RNase H fold. EP12_15215 SM00382 ATPases associated with a variety of cellular activities EP12_15220 SM00382 ATPases associated with a variety of cellular activities EP12_15280 SM00530 Helix-turn-helix XRE-family like proteins EP12_15310 SM00986 Uracil DNA glycosylase superfamily EP12_15310 SM00987 UreE urease accessory protein, C-terminal domain EP12_15335 SM00829 Enoylreductase EP12_15345 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor EP12_15350 SM00226 Low molecular weight phosphatase family EP12_15365 SM00448 cheY-homologous receiver domain EP12_15375 SM00448 cheY-homologous receiver domain EP12_15375 SM00862 Transcriptional regulatory protein, C terminal EP12_15380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain EP12_15380 SM00387 Histidine kinase-like ATPases EP12_15420 SM00267 diguanylate cyclase EP12_15465 SM00345 helix_turn_helix gluconate operon transcriptional repressor EP12_15465 SM00895 EP12_15465 EP12_15490 SM00267 diguanylate cyclase EP12_15490 SM00448 cheY-homologous receiver domain EP12_15510 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) EP12_15510 SM00091 PAS domain EP12_15510 SM00387 Histidine kinase-like ATPases EP12_15510 SM00388 His Kinase A (phosphoacceptor) domain EP12_15510 SM00448 cheY-homologous receiver domain EP12_15515 SM00287 Bacterial SH3 domain homologues EP12_15515 SM00644 EP12_15515 EP12_15595 SM01007 Class II Aldolase and Adducin N-terminal domain EP12_15600 SM00420 helix_turn_helix, Deoxyribose operon repressor EP12_15600 SM01134 EP12_15600 EP12_15660 SM00710 Parallel beta-helix repeats EP12_15665 SM00450 Rhodanese Homology Domain EP12_15695 SM00448 cheY-homologous receiver domain EP12_15695 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. EP12_15735 SM00530 Helix-turn-helix XRE-family like proteins EP12_15815 SM00448 cheY-homologous receiver domain EP12_15830 SM01230 EP12_15830 EP12_15840 SM00091 PAS domain EP12_15840 SM00387 Histidine kinase-like ATPases EP12_15840 SM00388 His Kinase A (phosphoacceptor) domain EP12_15845 SM00382 ATPases associated with a variety of cellular activities EP12_15845 SM00448 cheY-homologous receiver domain EP12_15850 SM00073 Histidine Phosphotransfer domain EP12_15855 SM00563 Phosphate acyltransferases EP12_15880 SM00387 Histidine kinase-like ATPases EP12_15880 SM00388 His Kinase A (phosphoacceptor) domain EP12_15880 SM00448 cheY-homologous receiver domain EP12_15880 SM01358 EP12_15880 EP12_15905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_15910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_15910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain EP12_15945 SM00382 ATPases associated with a variety of cellular activities EP12_15950 SM00382 ATPases associated with a variety of cellular activities EP12_15955 SM00382 ATPases associated with a variety of cellular activities EP12_16015 SM00346 helix_turn_helix isocitrate lyase regulation EP12_16035 SM00822 EP12_16035 EP12_16125 SM00345 helix_turn_helix gluconate operon transcriptional repressor EP12_16125 SM00895 EP12_16125 EP12_16155 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain EP12_16175 SM00245 tail specific protease EP12_16190 SM00028 Tetratricopeptide repeats EP12_16215 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) EP12_16215 SM00091 PAS domain EP12_16215 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). EP12_16250 SM00996 S-adenosyl-L-homocysteine hydrolase EP12_16250 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EP12_16270 SM00822 EP12_16270 EP12_16285 SM00354 helix_turn _helix lactose operon repressor EP12_16330 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain EP12_16340 SM00382 ATPases associated with a variety of cellular activities EP12_16355 SM00822 EP12_16355 EP12_16365 SM00487 DEAD-like helicases superfamily EP12_16365 SM00490 helicase superfamily c-terminal domain EP12_16385 SM00345 helix_turn_helix gluconate operon transcriptional repressor EP12_16385 SM00895 EP12_16385 EP12_16425 SM00267 diguanylate cyclase EP12_16430 SM00155 Phospholipase D. Active site motifs. EP12_16460 SM00448 cheY-homologous receiver domain EP12_16475 SM00486 DNA polymerase type-B family EP12_16480 SM00054 EF-hand, calcium binding motif EP12_16500 SM00360 RNA recognition motif EP12_16535 SM00986 Uracil DNA glycosylase superfamily EP12_16535 SM00987 UreE urease accessory protein, C-terminal domain EP12_16540 SM00052 Putative diguanylate phosphodiesterase EP12_16540 SM00267 diguanylate cyclase EP12_16540 SM00448 cheY-homologous receiver domain EP12_16635 SM00173 Ras subfamily of RAS small GTPases EP12_16635 SM00175 Rab subfamily of small GTPases EP12_16650 SM00563 Phosphate acyltransferases EP12_16655 SM00563 Phosphate acyltransferases EP12_16730 SM00028 Tetratricopeptide repeats EP12_16780 SM00052 Putative diguanylate phosphodiesterase EP12_16780 SM00267 diguanylate cyclase EP12_16795 SM00849 Metallo-beta-lactamase superfamily EP12_16815 SM00060 Fibronectin type 3 domain EP12_16820 SM00060 Fibronectin type 3 domain EP12_16855 SM00344 helix_turn_helix ASNC type EP12_16875 SM00382 ATPases associated with a variety of cellular activities EP12_16905 SM00354 helix_turn _helix lactose operon repressor EP12_16910 SM00849 Metallo-beta-lactamase superfamily EP12_17050 SM00028 Tetratricopeptide repeats EP12_17060 SM00479 EP12_17060 EP12_17080 SM00387 Histidine kinase-like ATPases EP12_17080 SM00388 His Kinase A (phosphoacceptor) domain EP12_17080 SM00448 cheY-homologous receiver domain EP12_17110 SM00421 helix_turn_helix, Lux Regulon EP12_17110 SM00448 cheY-homologous receiver domain EP12_17135 SM01358 EP12_17135 EP12_17140 SM00248 ankyrin repeats EP12_17145 SM01060 EP12_17145 EP12_17280 SM00984 UDP binding domain EP12_17335 SM01209 EP12_17335 EP12_17420 SM00662 RNA polymerases D EP12_17425 SM00363 S4 RNA-binding domain EP12_17425 SM01390 EP12_17425 EP12_17485 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. EP12_17490 SM01374 EP12_17490 EP12_17505 SM00967 RNA 2'-O ribose methyltransferase substrate binding EP12_17525 SM00671 Sel1-like repeats. EP12_17615 SM00357 Cold shock protein domain EP12_17645 SM00448 cheY-homologous receiver domain EP12_17655 SM00387 Histidine kinase-like ATPases EP12_17665 SM00448 cheY-homologous receiver domain EP12_17690 SM00382 ATPases associated with a variety of cellular activities EP12_17710 SM00382 ATPases associated with a variety of cellular activities EP12_17710 SM01086 C-terminal, D2-small domain, of ClpB protein EP12_17725 SM00487 DEAD-like helicases superfamily EP12_17725 SM00490 helicase superfamily c-terminal domain EP12_17740 SM00919 Malic enzyme, NAD binding domain EP12_17740 SM01274 EP12_17740 EP12_17805 SM00382 ATPases associated with a variety of cellular activities EP12_17810 SM00382 ATPases associated with a variety of cellular activities EP12_17810 SM00962 SRP54-type protein, GTPase domain EP12_17810 SM00963 SRP54-type protein, helical bundle domain EP12_17890 SM00382 ATPases associated with a variety of cellular activities EP12_17900 SM00448 cheY-homologous receiver domain EP12_17900 SM00862 Transcriptional regulatory protein, C terminal EP12_17905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain EP12_17905 SM00387 Histidine kinase-like ATPases EP12_17905 SM00388 His Kinase A (phosphoacceptor) domain EP12_17915 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. EP12_17930 SM00116 Domain in cystathionine beta-synthase and other proteins. EP12_18020 SM00649 Ribosomal protein L11/L12 EP12_18035 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. EP12_18035 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. EP12_18090 SM00782 PhnA Zinc-Ribbon EP12_18145 SM00028 Tetratricopeptide repeats EP12_18145 SM00267 diguanylate cyclase EP12_18155 SM00342 helix_turn_helix, arabinose operon control protein EP12_18210 SM00487 DEAD-like helicases superfamily EP12_18210 SM00490 helicase superfamily c-terminal domain EP12_18290 SM00244 prohibitin homologues EP12_18425 SM00387 Histidine kinase-like ATPases EP12_18425 SM00388 His Kinase A (phosphoacceptor) domain EP12_18450 SM00354 helix_turn _helix lactose operon repressor EP12_18480 SM00422 helix_turn_helix, mercury resistance EP12_18500 SM00382 ATPases associated with a variety of cellular activities EP12_18540 SM00267 diguanylate cyclase EP12_18620 SM00382 ATPases associated with a variety of cellular activities EP12_18675 SM00421 helix_turn_helix, Lux Regulon EP12_18690 SM00028 Tetratricopeptide repeats EP12_18820 SM00116 Domain in cystathionine beta-synthase and other proteins. EP12_18860 SM00829 Enoylreductase EP12_18865 SM00267 diguanylate cyclase EP12_18970 SM00420 helix_turn_helix, Deoxyribose operon repressor EP12_18970 SM01134 EP12_18970 EP12_18985 SM00267 diguanylate cyclase EP12_19000 SM00342 helix_turn_helix, arabinose operon control protein EP12_19000 SM01009 AlkA N-terminal domain EP12_19030 SM01002 Alanine dehydrogenase/PNT, C-terminal domain EP12_19030 SM01003 Alanine dehydrogenase/PNT, N-terminal domain EP12_19115 SM00342 helix_turn_helix, arabinose operon control protein EP12_19220 SM00878 Biotin carboxylase C-terminal domain EP12_19240 SM00479 EP12_19240 EP12_19240 SM00990 EP12_19240 EP12_19285 SM00798 AICARFT/IMPCHase bienzyme EP12_19285 SM00851 MGS-like domain EP12_19295 SM01209 EP12_19295 EP12_19295 SM01210 EP12_19295 EP12_19325 SM00448 cheY-homologous receiver domain EP12_19325 SM00862 Transcriptional regulatory protein, C terminal EP12_19350 SM00363 S4 RNA-binding domain EP12_19575 SM00871 Bacterial transcription activator, effector binding domain EP12_19895 SM00530 Helix-turn-helix XRE-family like proteins EP12_19930 SM00530 Helix-turn-helix XRE-family like proteins EP12_19985 SM00354 helix_turn _helix lactose operon repressor EP12_20000 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. EP12_20015 SM01144 EP12_20015 EP12_20040 SM00382 ATPases associated with a variety of cellular activities EP12_20080 SM00470 ParB-like nuclease domain EP12_20095 SM01228 EP12_20095