locus-tag class description EP13_00005 PF00308 Bacterial dnaA protein EP13_00005 PF08299 Bacterial dnaA protein helix-turn-helix EP13_00005 PF11638 DnaA N-terminal domain EP13_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain EP13_00010 PF02767 DNA polymerase III beta subunit, central domain EP13_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain EP13_00015 PF02463 RecF/RecN/SMC N terminal domain EP13_00030 PF02092 Glycyl-tRNA synthetase beta subunit EP13_00030 PF05746 DALR anticodon binding domain EP13_00035 PF02091 Glycyl-tRNA synthetase alpha subunit EP13_00040 PF03352 Methyladenine glycosylase EP13_00050 PF04220 Der GTPase activator (YihI) EP13_00060 PF00034 Cytochrome c EP13_00065 PF01926 50S ribosome-binding GTPase EP13_00070 PF01367 5'-3' exonuclease, C-terminal SAM fold EP13_00070 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EP13_00070 PF00476 DNA polymerase family A EP13_00070 PF01612 3'-5' exonuclease EP13_00080 PF02386 Cation transport protein EP13_00090 PF01029 NusB family EP13_00090 PF01189 16S rRNA methyltransferase RsmB/F EP13_00095 PF02911 Formyl transferase, C-terminal domain EP13_00095 PF00551 Formyl transferase EP13_00100 PF01327 Polypeptide deformylase EP13_00105 PF01476 LysM domain EP13_00110 PF17782 DprA winged helix domain EP13_00110 PF02481 DNA recombination-mediator protein A EP13_00115 PF04361 Protein of unknown function (DUF494) EP13_00125 PF01300 Telomere recombination EP13_00130 PF01218 Coproporphyrinogen III oxidase EP13_00145 PF08501 Shikimate dehydrogenase substrate binding domain EP13_00145 PF01488 Shikimate / quinate 5-dehydrogenase EP13_00145 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EP13_00150 PF00132 Bacterial transferase hexapeptide (six repeats) EP13_00195 PF14579 Helix-hairpin-helix motif EP13_00195 PF02811 PHP domain EP13_00195 PF01336 OB-fold nucleic acid binding domain EP13_00195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EP13_00195 PF07733 Bacterial DNA polymerase III alpha NTPase domain EP13_00225 PF04389 Peptidase family M28 EP13_00225 PF02225 PA domain EP13_00230 PF01467 Cytidylyltransferase-like EP13_00240 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase EP13_00245 PF00440 Bacterial regulatory proteins, tetR family EP13_00250 PF02441 Flavoprotein EP13_00250 PF04127 DNA / pantothenate metabolism flavoprotein EP13_00255 PF04002 RadC-like JAB domain EP13_00275 PF06082 Exopolysaccharide biosynthesis protein YbjH EP13_00280 PF00830 Ribosomal L28 family EP13_00285 PF00471 Ribosomal protein L33 EP13_00295 PF06827 Zinc finger found in FPG and IleRS EP13_00295 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EP13_00295 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EP13_00300 PF01467 Cytidylyltransferase-like EP13_00310 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EP13_00325 PF00990 Diguanylate cyclase, GGDEF domain EP13_00325 PF03707 Bacterial signalling protein N terminal repeat EP13_00325 PF00563 EAL domain EP13_00330 PF00155 Aminotransferase class I and II EP13_00335 PF08240 Alcohol dehydrogenase GroES-like domain EP13_00335 PF00107 Zinc-binding dehydrogenase EP13_00340 PF00581 Rhodanese-like domain EP13_00345 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease EP13_00345 PF01694 Rhomboid family EP13_00355 PF04345 Chorismate lyase EP13_00360 PF01040 UbiA prenyltransferase family EP13_00365 PF04380 Membrane fusogenic activity EP13_00370 PF00580 UvrD/REP helicase N-terminal domain EP13_00370 PF13361 UvrD-like helicase C-terminal domain EP13_00375 PF00563 EAL domain EP13_00375 PF03707 Bacterial signalling protein N terminal repeat EP13_00375 PF00990 Diguanylate cyclase, GGDEF domain EP13_00380 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EP13_00460 PF13533 Biotin-lipoyl like EP13_00465 PF00005 ABC transporter EP13_00475 PF00593 TonB dependent receptor EP13_00475 PF07715 TonB-dependent Receptor Plug Domain EP13_00480 PF00593 TonB dependent receptor EP13_00480 PF07715 TonB-dependent Receptor Plug Domain EP13_00485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP13_00485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP13_00485 PF02770 Acyl-CoA dehydrogenase, middle domain EP13_00490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_00490 PF03466 LysR substrate binding domain EP13_00495 PF00753 Metallo-beta-lactamase superfamily EP13_00500 PF04317 YcjX-like family, DUF463 EP13_00515 PF06968 Biotin and Thiamin Synthesis associated domain EP13_00515 PF04055 Radical SAM superfamily EP13_00520 PF05690 Thiazole biosynthesis protein ThiG EP13_00530 PF00899 ThiF family EP13_00535 PF02581 Thiamine monophosphate synthase EP13_00540 PF01964 Radical SAM ThiC family EP13_00540 PF13667 ThiC-associated domain EP13_00545 PF07715 TonB-dependent Receptor Plug Domain EP13_00545 PF00593 TonB dependent receptor EP13_00560 PF01996 F420-0:Gamma-glutamyl ligase EP13_00560 PF00881 Nitroreductase family EP13_00575 PF04055 Radical SAM superfamily EP13_00580 PF04055 Radical SAM superfamily EP13_00585 PF08362 YcdC-like protein, C-terminal region EP13_00585 PF00440 Bacterial regulatory proteins, tetR family EP13_00590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_00590 PF03466 LysR substrate binding domain EP13_00595 PF00202 Aminotransferase class-III EP13_00600 PF00171 Aldehyde dehydrogenase family EP13_00610 PF07687 Peptidase dimerisation domain EP13_00610 PF01546 Peptidase family M20/M25/M40 EP13_00615 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EP13_00620 PF01979 Amidohydrolase family EP13_00625 PF07219 HemY protein N-terminus EP13_00625 PF07719 Tetratricopeptide repeat EP13_00630 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase EP13_00635 PF02602 Uroporphyrinogen-III synthase HemD EP13_00640 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain EP13_00640 PF03900 Porphobilinogen deaminase, C-terminal domain EP13_00645 PF00990 Diguanylate cyclase, GGDEF domain EP13_00645 PF00072 Response regulator receiver domain EP13_00655 PF00625 Guanylate kinase EP13_00660 PF01192 RNA polymerase Rpb6 EP13_00665 PF13291 ACT domain EP13_00665 PF04607 Region found in RelA / SpoT proteins EP13_00665 PF02824 TGS domain EP13_00670 PF01042 Endoribonuclease L-PSP EP13_00675 PF00588 SpoU rRNA Methylase family EP13_00675 PF12105 SpoU, rRNA methylase, C-terminal EP13_00680 PF17191 RecG wedge domain EP13_00680 PF00271 Helicase conserved C-terminal domain EP13_00680 PF00270 DEAD/DEAH box helicase EP13_00685 PF04445 Putative SAM-dependent methyltransferase EP13_00690 PF08534 Redoxin EP13_00710 PF00528 Binding-protein-dependent transport system inner membrane component EP13_00715 PF00005 ABC transporter EP13_00715 PF08402 TOBE domain EP13_00720 PF00924 Mechanosensitive ion channel EP13_00720 PF05552 Conserved TM helix EP13_00735 PF00593 TonB dependent receptor EP13_00750 PF00072 Response regulator receiver domain EP13_00750 PF00486 Transcriptional regulatory protein, C terminal EP13_00755 PF13181 Tetratricopeptide repeat EP13_00760 PF07715 TonB-dependent Receptor Plug Domain EP13_00760 PF00593 TonB dependent receptor EP13_00765 PF00491 Arginase family EP13_00780 PF00491 Arginase family EP13_00785 PF00491 Arginase family EP13_00790 PF00512 His Kinase A (phospho-acceptor) domain EP13_00790 PF01627 Hpt domain EP13_00790 PF00072 Response regulator receiver domain EP13_00790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_00790 PF00989 PAS fold EP13_00790 PF18415 Histidine kinase receptor ArcB trans-membrane domain EP13_00800 PF02653 Branched-chain amino acid transport system / permease component EP13_00805 PF02653 Branched-chain amino acid transport system / permease component EP13_00810 PF12399 Branched-chain amino acid ATP-binding cassette transporter EP13_00810 PF00005 ABC transporter EP13_00815 PF00005 ABC transporter EP13_00820 PF01774 UreD urease accessory protein EP13_00825 PF00547 Urease, gamma subunit EP13_00830 PF00699 Urease beta subunit EP13_00835 PF00449 Urease alpha-subunit, N-terminal domain EP13_00835 PF01979 Amidohydrolase family EP13_00840 PF05194 UreE urease accessory protein, C-terminal domain EP13_00840 PF02814 UreE urease accessory protein, N-terminal domain EP13_00845 PF01730 UreF EP13_00850 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP13_00865 PF17151 Periplasmic sensor domain EP13_00865 PF00990 Diguanylate cyclase, GGDEF domain EP13_00875 PF03466 LysR substrate binding domain EP13_00875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_00880 PF01810 LysE type translocator EP13_00895 PF00529 HlyD membrane-fusion protein of T1SS EP13_00895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP13_00900 PF00873 AcrB/AcrD/AcrF family EP13_00910 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain EP13_00910 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain EP13_00915 PF00850 Histone deacetylase domain EP13_00930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_00930 PF00672 HAMP domain EP13_00930 PF12729 Four helix bundle sensory module for signal transduction EP13_00945 PF00925 GTP cyclohydrolase II EP13_00950 PF00990 Diguanylate cyclase, GGDEF domain EP13_00950 PF00563 EAL domain EP13_00950 PF08448 PAS fold EP13_00965 PF00271 Helicase conserved C-terminal domain EP13_00965 PF16124 RecQ zinc-binding EP13_00965 PF09382 RQC domain EP13_00965 PF00270 DEAD/DEAH box helicase EP13_00965 PF00570 HRDC domain EP13_00970 PF03061 Thioesterase superfamily EP13_00975 PF01769 Divalent cation transporter EP13_00975 PF03448 MgtE intracellular N domain EP13_00975 PF00571 CBS domain EP13_00980 PF00892 EamA-like transporter family EP13_00985 PF00990 Diguanylate cyclase, GGDEF domain EP13_00985 PF00072 Response regulator receiver domain EP13_00990 PF00580 UvrD/REP helicase N-terminal domain EP13_00990 PF13361 UvrD-like helicase C-terminal domain EP13_00995 PF00132 Bacterial transferase hexapeptide (six repeats) EP13_00995 PF06426 Serine acetyltransferase, N-terminal EP13_01000 PF13419 Haloacid dehalogenase-like hydrolase EP13_01005 PF02899 Phage integrase, N-terminal SAM-like domain EP13_01005 PF00589 Phage integrase family EP13_01015 PF01678 Diaminopimelate epimerase EP13_01020 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EP13_01020 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EP13_01035 PF01569 PAP2 superfamily EP13_01040 PF03737 Aldolase/RraA EP13_01050 PF02441 Flavoprotein EP13_01055 PF08245 Mur ligase middle domain EP13_01055 PF01225 Mur ligase family, catalytic domain EP13_01055 PF02875 Mur ligase family, glutamate ligase domain EP13_01060 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain EP13_01065 PF00719 Inorganic pyrophosphatase EP13_01090 PF17760 UvrA interaction domain EP13_01090 PF00005 ABC transporter EP13_01090 PF17755 UvrA DNA-binding domain EP13_01095 PF07690 Major Facilitator Superfamily EP13_01100 PF13419 Haloacid dehalogenase-like hydrolase EP13_01115 PF00356 Bacterial regulatory proteins, lacI family EP13_01120 PF01263 Aldose 1-epimerase EP13_01125 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain EP13_01125 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain EP13_01130 PF00288 GHMP kinases N terminal domain EP13_01130 PF08544 GHMP kinases C terminal EP13_01130 PF10509 Galactokinase galactose-binding signature EP13_01135 PF00474 Sodium:solute symporter family EP13_01140 PF00436 Single-strand binding protein family EP13_01155 PF16875 Glycosyl hydrolase family 36 N-terminal domain EP13_01155 PF16874 Glycosyl hydrolase family 36 C-terminal domain EP13_01165 PF04820 Tryptophan halogenase EP13_01170 PF00474 Sodium:solute symporter family EP13_01180 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EP13_01180 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EP13_01185 PF08220 DeoR-like helix-turn-helix domain EP13_01185 PF00455 DeoR C terminal sensor domain EP13_01210 PF04085 rod shape-determining protein MreC EP13_01215 PF04093 rod shape-determining protein MreD EP13_01220 PF02545 Maf-like protein EP13_01225 PF10150 Ribonuclease E/G family EP13_01225 PF00575 S1 RNA binding domain EP13_01230 PF13502 AsmA-like C-terminal region EP13_01230 PF13116 Protein of unknown function EP13_01235 PF00795 Carbon-nitrogen hydrolase EP13_01240 PF01523 Putative modulator of DNA gyrase EP13_01245 PF04751 Protein of unknown function (DUF615) EP13_01250 PF01523 Putative modulator of DNA gyrase EP13_01260 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EP13_01260 PF00703 Glycosyl hydrolases family 2 EP13_01260 PF02837 Glycosyl hydrolases family 2, sugar binding domain EP13_01260 PF02929 Beta galactosidase small chain EP13_01260 PF16353 Domain of unknown function(DUF4981) EP13_01265 PF00486 Transcriptional regulatory protein, C terminal EP13_01265 PF00072 Response regulator receiver domain EP13_01270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_01270 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP13_01270 PF00512 His Kinase A (phospho-acceptor) domain EP13_01275 PF08323 Starch synthase catalytic domain EP13_01275 PF00534 Glycosyl transferases group 1 EP13_01280 PF05175 Methyltransferase small domain EP13_01280 PF08468 Methyltransferase small domain N-terminal EP13_01285 PF02390 Putative methyltransferase EP13_01295 PF14815 NUDIX domain EP13_01295 PF00633 Helix-hairpin-helix motif EP13_01295 PF00730 HhH-GPD superfamily base excision DNA repair protein EP13_01300 PF04362 Bacterial Fe(2+) trafficking EP13_01335 PF01131 DNA topoisomerase EP13_01335 PF01396 Topoisomerase DNA binding C4 zinc finger EP13_01335 PF01751 Toprim domain EP13_01345 PF01693 Caulimovirus viroplasmin EP13_01365 PF00589 Phage integrase family EP13_01365 PF02899 Phage integrase, N-terminal SAM-like domain EP13_01395 PF00672 HAMP domain EP13_01395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_01395 PF00512 His Kinase A (phospho-acceptor) domain EP13_01400 PF00072 Response regulator receiver domain EP13_01400 PF00486 Transcriptional regulatory protein, C terminal EP13_01415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP13_01420 PF00873 AcrB/AcrD/AcrF family EP13_01460 PF01565 FAD binding domain EP13_01460 PF08031 Berberine and berberine like EP13_01490 PF00970 Oxidoreductase FAD-binding domain EP13_01490 PF00042 Globin EP13_01490 PF00175 Oxidoreductase NAD-binding domain EP13_01510 PF01750 Hydrogenase maturation protease EP13_01520 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal EP13_01520 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit EP13_01525 PF00374 Nickel-dependent hydrogenase EP13_01535 PF01455 HupF/HypC family EP13_01540 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA EP13_01545 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP13_01550 PF01924 Hydrogenase formation hypA family EP13_01555 PF17788 HypF Kae1-like domain EP13_01555 PF01300 Telomere recombination EP13_01555 PF07503 HypF finger EP13_01555 PF00708 Acylphosphatase EP13_01560 PF00586 AIR synthase related protein, N-terminal domain EP13_01560 PF02769 AIR synthase related protein, C-terminal domain EP13_01565 PF00376 MerR family regulatory protein EP13_01565 PF09278 MerR, DNA binding EP13_01570 PF00403 Heavy-metal-associated domain EP13_01625 PF00529 HlyD membrane-fusion protein of T1SS EP13_01625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP13_01630 PF00873 AcrB/AcrD/AcrF family EP13_01635 PF16916 Dimerisation domain of Zinc Transporter EP13_01635 PF01545 Cation efflux family EP13_01650 PF13520 Amino acid permease EP13_01660 PF07732 Multicopper oxidase EP13_01660 PF07731 Multicopper oxidase EP13_01660 PF00394 Multicopper oxidase EP13_01685 PF07715 TonB-dependent Receptor Plug Domain EP13_01685 PF00593 TonB dependent receptor EP13_01715 PF08787 Alginate lyase EP13_01725 PF13280 WYL domain EP13_01725 PF08279 HTH domain EP13_01730 PF01266 FAD dependent oxidoreductase EP13_01735 PF00593 TonB dependent receptor EP13_01735 PF07715 TonB-dependent Receptor Plug Domain EP13_01745 PF00512 His Kinase A (phospho-acceptor) domain EP13_01745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_01745 PF16750 Sensor domain of 2-component histidine kinase EP13_01745 PF00672 HAMP domain EP13_01750 PF00072 Response regulator receiver domain EP13_01750 PF00486 Transcriptional regulatory protein, C terminal EP13_01765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_01765 PF00672 HAMP domain EP13_01765 PF02743 Cache domain EP13_01770 PF00072 Response regulator receiver domain EP13_01775 PF01584 CheW-like domain EP13_01775 PF09078 CheY binding EP13_01775 PF02895 Signal transducing histidine kinase, homodimeric domain EP13_01775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_01775 PF01627 Hpt domain EP13_01780 PF01584 CheW-like domain EP13_01785 PF08447 PAS fold EP13_01785 PF13426 PAS domain EP13_01785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_01790 PF03705 CheR methyltransferase, all-alpha domain EP13_01790 PF01739 CheR methyltransferase, SAM binding domain EP13_01795 PF03975 CheD chemotactic sensory transduction EP13_01800 PF00072 Response regulator receiver domain EP13_01800 PF01339 CheB methylesterase EP13_01830 PF01258 Prokaryotic dksA/traR C4-type zinc finger EP13_01845 PF00356 Bacterial regulatory proteins, lacI family EP13_01850 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EP13_01850 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EP13_01860 PF03825 Nucleoside H+ symporter EP13_01865 PF01261 Xylose isomerase-like TIM barrel EP13_01870 PF00732 GMC oxidoreductase EP13_01870 PF05199 GMC oxidoreductase EP13_01915 PF00300 Histidine phosphatase superfamily (branch 1) EP13_01920 PF00330 Aconitase family (aconitate hydratase) EP13_01920 PF00694 Aconitase C-terminal domain EP13_01925 PF00437 Type II/IV secretion system protein EP13_01930 PF00338 Ribosomal protein S10p/S20e EP13_01935 PF00297 Ribosomal protein L3 EP13_01940 PF00573 Ribosomal protein L4/L1 family EP13_01945 PF00276 Ribosomal protein L23 EP13_01950 PF00181 Ribosomal Proteins L2, RNA binding domain EP13_01950 PF03947 Ribosomal Proteins L2, C-terminal domain EP13_01955 PF00203 Ribosomal protein S19 EP13_01960 PF00237 Ribosomal protein L22p/L17e EP13_01965 PF07650 KH domain EP13_01965 PF00189 Ribosomal protein S3, C-terminal domain EP13_01970 PF00252 Ribosomal protein L16p/L10e EP13_01975 PF00831 Ribosomal L29 protein EP13_01980 PF00366 Ribosomal protein S17 EP13_01985 PF00534 Glycosyl transferases group 1 EP13_01985 PF13439 Glycosyltransferase Family 4 EP13_01990 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EP13_01995 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) EP13_02000 PF00999 Sodium/hydrogen exchanger family EP13_02000 PF03471 Transporter associated domain EP13_02000 PF02080 TrkA-C domain EP13_02010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_02010 PF02743 Cache domain EP13_02010 PF00672 HAMP domain EP13_02015 PF01432 Peptidase family M3 EP13_02030 PF00551 Formyl transferase EP13_02030 PF01842 ACT domain EP13_02060 PF00905 Penicillin binding protein transpeptidase domain EP13_02060 PF14814 Bifunctional transglycosylase second domain EP13_02060 PF00912 Transglycosylase EP13_02075 PF05661 Protein of unknown function (DUF808) EP13_02080 PF12833 Helix-turn-helix domain EP13_02095 PF00543 Nitrogen regulatory protein P-II EP13_02100 PF00909 Ammonium Transporter Family EP13_02115 PF04261 Dyp-type peroxidase family EP13_02120 PF00202 Aminotransferase class-III EP13_02125 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EP13_02125 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EP13_02140 PF00873 AcrB/AcrD/AcrF family EP13_02150 PF01627 Hpt domain EP13_02150 PF00072 Response regulator receiver domain EP13_02150 PF00672 HAMP domain EP13_02150 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP13_02150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_02150 PF00512 His Kinase A (phospho-acceptor) domain EP13_02155 PF03989 DNA gyrase C-terminal domain, beta-propeller EP13_02155 PF00521 DNA gyrase/topoisomerase IV, subunit A EP13_02165 PF03707 Bacterial signalling protein N terminal repeat EP13_02165 PF00990 Diguanylate cyclase, GGDEF domain EP13_02165 PF13188 PAS domain EP13_02165 PF00563 EAL domain EP13_02175 PF00171 Aldehyde dehydrogenase family EP13_02180 PF04958 Arginine N-succinyltransferase beta subunit EP13_02185 PF00202 Aminotransferase class-III EP13_02195 PF00117 Glutamine amidotransferase class-I EP13_02200 PF00579 tRNA synthetases class I (W and Y) EP13_02205 PF00834 Ribulose-phosphate 3 epimerase family EP13_02235 PF01761 3-dehydroquinate synthase EP13_02240 PF01202 Shikimate kinase EP13_02245 PF03958 Bacterial type II/III secretion system short domain EP13_02245 PF11741 AMIN domain EP13_02245 PF07660 Secretin and TonB N terminus short domain EP13_02245 PF00263 Bacterial type II and III secretion system protein EP13_02270 PF00905 Penicillin binding protein transpeptidase domain EP13_02270 PF17092 Penicillin-binding protein OB-like domain EP13_02270 PF00912 Transglycosylase EP13_02275 PF03949 Malic enzyme, NAD binding domain EP13_02275 PF00390 Malic enzyme, N-terminal domain EP13_02285 PF02798 Glutathione S-transferase, N-terminal domain EP13_02290 PF00199 Catalase EP13_02290 PF06628 Catalase-related immune-responsive EP13_02310 PF03707 Bacterial signalling protein N terminal repeat EP13_02310 PF00990 Diguanylate cyclase, GGDEF domain EP13_02310 PF00563 EAL domain EP13_02315 PF00583 Acetyltransferase (GNAT) family EP13_02315 PF00696 Amino acid kinase family EP13_02320 PF14698 Argininosuccinate lyase C-terminal EP13_02320 PF00206 Lyase EP13_02325 PF00764 Arginosuccinate synthase EP13_02330 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EP13_02330 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EP13_02335 PF00696 Amino acid kinase family EP13_02340 PF02774 Semialdehyde dehydrogenase, dimerisation domain EP13_02340 PF01118 Semialdehyde dehydrogenase, NAD binding domain EP13_02345 PF02142 MGS-like domain EP13_02355 PF02107 Flagellar L-ring protein EP13_02370 PF00072 Response regulator receiver domain EP13_02370 PF00486 Transcriptional regulatory protein, C terminal EP13_02375 PF16527 Two-component sensor protein CpxA, periplasmic domain EP13_02375 PF00512 His Kinase A (phospho-acceptor) domain EP13_02375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_02375 PF00672 HAMP domain EP13_02380 PF12146 Serine aminopeptidase, S33 EP13_02385 PF00588 SpoU rRNA Methylase family EP13_02395 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EP13_02395 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EP13_02400 PF02556 Preprotein translocase subunit SecB EP13_02405 PF00462 Glutaredoxin EP13_02410 PF00581 Rhodanese-like domain EP13_02415 PF01551 Peptidase family M23 EP13_02435 PF03009 Glycerophosphoryl diester phosphodiesterase family EP13_02445 PF02666 Phosphatidylserine decarboxylase EP13_02450 PF03193 RsgA GTPase EP13_02455 PF00929 Exonuclease EP13_02475 PF00593 TonB dependent receptor EP13_02475 PF07715 TonB-dependent Receptor Plug Domain EP13_02490 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP13_02490 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP13_02490 PF00205 Thiamine pyrophosphate enzyme, central domain EP13_02495 PF10369 Small subunit of acetolactate synthase EP13_02505 PF02416 mttA/Hcf106 family EP13_02510 PF02416 mttA/Hcf106 family EP13_02515 PF00902 Sec-independent protein translocase protein (TatC) EP13_02525 PF01026 TatD related DNase EP13_02530 PF00990 Diguanylate cyclase, GGDEF domain EP13_02530 PF07694 5TMR of 5TMR-LYT EP13_02535 PF00490 Delta-aminolevulinic acid dehydratase EP13_02540 PF02541 Ppx/GppA phosphatase family EP13_02545 PF00271 Helicase conserved C-terminal domain EP13_02545 PF00270 DEAD/DEAH box helicase EP13_02550 PF00085 Thioredoxin EP13_02560 PF07497 Rho termination factor, RNA-binding domain EP13_02560 PF07498 Rho termination factor, N-terminal domain EP13_02560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP13_02565 PF01546 Peptidase family M20/M25/M40 EP13_02565 PF07687 Peptidase dimerisation domain EP13_02570 PF09308 LuxQ, periplasmic EP13_02570 PF00512 His Kinase A (phospho-acceptor) domain EP13_02570 PF00072 Response regulator receiver domain EP13_02570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_02575 PF06965 Na+/H+ antiporter 1 EP13_02580 PF00731 AIR carboxylase EP13_02585 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EP13_02585 PF02222 ATP-grasp domain EP13_02600 PF00210 Ferritin-like domain EP13_02605 PF07995 Glucose / Sorbosone dehydrogenase EP13_02610 PF07676 WD40-like Beta Propeller Repeat EP13_02610 PF00326 Prolyl oligopeptidase family EP13_02620 PF00085 Thioredoxin EP13_02625 PF00709 Adenylosuccinate synthetase EP13_02630 PF00171 Aldehyde dehydrogenase family EP13_02640 PF03553 Na+/H+ antiporter family EP13_02645 PF00933 Glycosyl hydrolase family 3 N terminal domain EP13_02655 PF07075 Protein of unknown function (DUF1343) EP13_02660 PF01380 SIS domain EP13_02665 PF00842 Alanine racemase, C-terminal domain EP13_02665 PF01168 Alanine racemase, N-terminal domain EP13_02765 PF00117 Glutamine amidotransferase class-I EP13_02765 PF13302 Acetyltransferase (GNAT) domain EP13_02765 PF00958 GMP synthase C terminal domain EP13_02765 PF03352 Methyladenine glycosylase EP13_02765 PF13673 Acetyltransferase (GNAT) domain EP13_02795 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH EP13_02805 PF01979 Amidohydrolase family EP13_02835 PF13495 Phage integrase, N-terminal SAM-like domain EP13_02835 PF00589 Phage integrase family EP13_02840 PF02803 Thiolase, C-terminal domain EP13_02840 PF00108 Thiolase, N-terminal domain EP13_02845 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP13_02845 PF00378 Enoyl-CoA hydratase/isomerase EP13_02845 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP13_02860 PF00557 Metallopeptidase family M24 EP13_02870 PF00348 Polyprenyl synthetase EP13_02875 PF00829 Ribosomal prokaryotic L21 protein EP13_02880 PF01016 Ribosomal L27 protein EP13_02885 PF01018 GTP1/OBG EP13_02885 PF01926 50S ribosome-binding GTPase EP13_02895 PF09055 Nickel-containing superoxide dismutase EP13_02915 PF00186 Dihydrofolate reductase EP13_02920 PF04545 Sigma-70, region 4 EP13_02920 PF04539 Sigma-70 region 3 EP13_02920 PF04542 Sigma-70 region 2 EP13_02920 PF00140 Sigma-70 factor, region 1.2 EP13_02925 PF01551 Peptidase family M23 EP13_02925 PF01476 LysM domain EP13_02930 PF09335 SNARE associated Golgi protein EP13_02940 PF01975 Survival protein SurE EP13_02945 PF01142 tRNA pseudouridine synthase D (TruD) EP13_02950 PF02542 YgbB family EP13_02955 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EP13_02960 PF04977 Septum formation initiator EP13_02970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_02970 PF17200 Single Cache domain 2 EP13_02970 PF00672 HAMP domain EP13_02975 PF18327 Proline utilization A proline dehydrogenase N-terminal domain EP13_02975 PF01619 Proline dehydrogenase EP13_02975 PF14850 DNA-binding domain of Proline dehydrogenase EP13_02975 PF00171 Aldehyde dehydrogenase family EP13_02980 PF02321 Outer membrane efflux protein EP13_02990 PF00873 AcrB/AcrD/AcrF family EP13_02995 PF00486 Transcriptional regulatory protein, C terminal EP13_02995 PF00072 Response regulator receiver domain EP13_03000 PF18719 ArlS sensor domain EP13_03000 PF00512 His Kinase A (phospho-acceptor) domain EP13_03000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_03010 PF01928 CYTH domain EP13_03020 PF02976 DNA mismatch repair enzyme MutH EP13_03025 PF00293 NUDIX domain EP13_03030 PF01590 GAF domain EP13_03030 PF02896 PEP-utilising enzyme, TIM barrel domain EP13_03030 PF00391 PEP-utilising enzyme, mobile domain EP13_03030 PF05524 PEP-utilising enzyme, N-terminal EP13_03035 PF01925 Sulfite exporter TauE/SafE EP13_03040 PF01790 Prolipoprotein diacylglyceryl transferase EP13_03045 PF00303 Thymidylate synthase EP13_03050 PF00072 Response regulator receiver domain EP13_03055 PF00990 Diguanylate cyclase, GGDEF domain EP13_03055 PF05230 MASE2 domain EP13_03065 PF07690 Major Facilitator Superfamily EP13_03080 PF00849 RNA pseudouridylate synthase EP13_03085 PF00271 Helicase conserved C-terminal domain EP13_03085 PF12137 RNA polymerase recycling family C-terminal EP13_03085 PF00176 SNF2 family N-terminal domain EP13_03085 PF18339 RapA N-terminal Tudor like domain 1 EP13_03085 PF18337 RapA N-terminal Tudor like domain EP13_03095 PF02562 PhoH-like protein EP13_03095 PF13638 PIN domain EP13_03105 PF10414 Sirohaem synthase dimerisation region EP13_03105 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EP13_03110 PF00271 Helicase conserved C-terminal domain EP13_03110 PF00270 DEAD/DEAH box helicase EP13_03110 PF03880 DbpA RNA binding domain EP13_03110 PF12343 Cold shock protein DEAD box A EP13_03130 PF02321 Outer membrane efflux protein EP13_03135 PF00293 NUDIX domain EP13_03140 PF06853 Protein of unknown function (DUF1249) EP13_03150 PF05728 Uncharacterised protein family (UPF0227) EP13_03155 PF01751 Toprim domain EP13_03155 PF00204 DNA gyrase B EP13_03155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_03155 PF00986 DNA gyrase B subunit, carboxyl terminus EP13_03160 PF00563 EAL domain EP13_03160 PF03707 Bacterial signalling protein N terminal repeat EP13_03160 PF00990 Diguanylate cyclase, GGDEF domain EP13_03165 PF00360 Phytochrome region EP13_03165 PF01590 GAF domain EP13_03165 PF00512 His Kinase A (phospho-acceptor) domain EP13_03165 PF08446 PAS fold EP13_03165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_03170 PF13419 Haloacid dehalogenase-like hydrolase EP13_03190 PF04055 Radical SAM superfamily EP13_03200 PF00152 tRNA synthetases class II (D, K and N) EP13_03205 PF00593 TonB dependent receptor EP13_03205 PF07715 TonB-dependent Receptor Plug Domain EP13_03215 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EP13_03220 PF05175 Methyltransferase small domain EP13_03230 PF01722 BolA-like protein EP13_03235 PF01569 PAP2 superfamily EP13_03245 PF03861 ANTAR domain EP13_03245 PF08376 Nitrate and nitrite sensing EP13_03255 PF01740 STAS domain EP13_03255 PF00916 Sulfate permease family EP13_03260 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP13_03260 PF18267 Rubredoxin NAD+ reductase C-terminal domain EP13_03260 PF04324 BFD-like [2Fe-2S] binding domain EP13_03260 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP13_03260 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP13_03265 PF13806 Rieske-like [2Fe-2S] domain EP13_03270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EP13_03270 PF00384 Molybdopterin oxidoreductase EP13_03270 PF01568 Molydopterin dinucleotide binding domain EP13_03270 PF04324 BFD-like [2Fe-2S] binding domain EP13_03275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EP13_03275 PF14824 Sirohaem biosynthesis protein central EP13_03275 PF10414 Sirohaem synthase dimerisation region EP13_03280 PF00591 Glycosyl transferase family, a/b domain EP13_03280 PF02885 Glycosyl transferase family, helical bundle domain EP13_03285 PF08447 PAS fold EP13_03285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_03285 PF13426 PAS domain EP13_03290 PF00005 ABC transporter EP13_03295 PF00528 Binding-protein-dependent transport system inner membrane component EP13_03300 PF00005 ABC transporter EP13_03310 PF12804 MobA-like NTP transferase domain EP13_03320 PF01323 DSBA-like thioredoxin domain EP13_03325 PF01636 Phosphotransferase enzyme family EP13_03330 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase EP13_03330 PF12801 4Fe-4S binding domain EP13_03330 PF13746 4Fe-4S dicluster domain EP13_03345 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP13_03345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP13_03345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP13_03345 PF02770 Acyl-CoA dehydrogenase, middle domain EP13_03360 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EP13_03360 PF13378 Enolase C-terminal domain-like EP13_03365 PF00596 Class II Aldolase and Adducin N-terminal domain EP13_03375 PF13533 Biotin-lipoyl like EP13_03380 PF00873 AcrB/AcrD/AcrF family EP13_03415 PF02743 Cache domain EP13_03415 PF00672 HAMP domain EP13_03415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_03420 PF04545 Sigma-70, region 4 EP13_03420 PF04539 Sigma-70 region 3 EP13_03420 PF04542 Sigma-70 region 2 EP13_03420 PF03979 Sigma-70 factor, region 1.1 EP13_03420 PF04546 Sigma-70, non-essential region EP13_03420 PF00140 Sigma-70 factor, region 1.2 EP13_03425 PF01807 CHC2 zinc finger EP13_03425 PF10410 DnaB-helicase binding domain of primase EP13_03425 PF08278 DNA primase DnaG DnaB-binding EP13_03425 PF08275 DNA primase catalytic core, N-terminal domain EP13_03435 PF01165 Ribosomal protein S21 EP13_03440 PF00814 Glycoprotease family EP13_03445 PF02660 Glycerol-3-phosphate acyltransferase EP13_03460 PF02673 Bacitracin resistance protein BacA EP13_03465 PF01230 HIT domain EP13_03480 PF03594 Benzoate membrane transport protein EP13_03485 PF01381 Helix-turn-helix EP13_03485 PF07883 Cupin domain EP13_03490 PF04381 Putative exonuclease, RdgC EP13_03495 PF00512 His Kinase A (phospho-acceptor) domain EP13_03495 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP13_03495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_03500 PF00072 Response regulator receiver domain EP13_03500 PF00486 Transcriptional regulatory protein, C terminal EP13_03505 PF00512 His Kinase A (phospho-acceptor) domain EP13_03505 PF00989 PAS fold EP13_03505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_03505 PF11808 Phosphate regulon sensor protein PhoR EP13_03510 PF12849 PBP superfamily domain EP13_03535 PF01618 MotA/TolQ/ExbB proton channel family EP13_03540 PF01618 MotA/TolQ/ExbB proton channel family EP13_03545 PF02472 Biopolymer transport protein ExbD/TolR EP13_03550 PF03544 Gram-negative bacterial TonB protein C-terminal EP13_03560 PF09411 Lipid A 3-O-deacylase (PagL) EP13_03570 PF00512 His Kinase A (phospho-acceptor) domain EP13_03570 PF01627 Hpt domain EP13_03570 PF00072 Response regulator receiver domain EP13_03570 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP13_03570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_03570 PF00672 HAMP domain EP13_03575 PF00501 AMP-binding enzyme EP13_03575 PF13193 AMP-binding enzyme C-terminal domain EP13_03590 PF00330 Aconitase family (aconitate hydratase) EP13_03590 PF11791 Aconitate B N-terminal domain EP13_03590 PF06434 Aconitate hydratase 2 N-terminus EP13_03605 PF11791 Aconitate B N-terminal domain EP13_03605 PF06434 Aconitate hydratase 2 N-terminus EP13_03605 PF00330 Aconitase family (aconitate hydratase) EP13_03615 PF01842 ACT domain EP13_03615 PF00696 Amino acid kinase family EP13_03620 PF00672 HAMP domain EP13_03620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_03625 PF00149 Calcineurin-like phosphoesterase EP13_03630 PF04379 ApaG domain EP13_03635 PF00398 Ribosomal RNA adenine dimethylase EP13_03640 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EP13_03645 PF09312 SurA N-terminal domain EP13_03645 PF00639 PPIC-type PPIASE domain EP13_03650 PF03968 OstA-like protein EP13_03650 PF04453 LPS transport system D EP13_03660 PF00226 DnaJ domain EP13_03660 PF05099 Tellurite resistance protein TerB EP13_03665 PF00589 Phage integrase family EP13_03665 PF02899 Phage integrase, N-terminal SAM-like domain EP13_03670 PF13098 Thioredoxin-like domain EP13_03670 PF10411 Disulfide bond isomerase protein N-terminus EP13_03685 PF02565 Recombination protein O C terminal EP13_03685 PF11967 Recombination protein O N terminal EP13_03690 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ EP13_03695 PF01648 4'-phosphopantetheinyl transferase superfamily EP13_03705 PF04607 Region found in RelA / SpoT proteins EP13_03705 PF13291 ACT domain EP13_03705 PF02824 TGS domain EP13_03710 PF03819 MazG nucleotide pyrophosphohydrolase domain EP13_03720 PF00572 Ribosomal protein L13 EP13_03725 PF00380 Ribosomal protein S9/S16 EP13_03730 PF08281 Sigma-70, region 4 EP13_03730 PF04542 Sigma-70 region 2 EP13_03740 PF07715 TonB-dependent Receptor Plug Domain EP13_03740 PF00593 TonB dependent receptor EP13_03750 PF00355 Rieske [2Fe-2S] domain EP13_03750 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal EP13_03755 PF00032 Cytochrome b(C-terminal)/b6/petD EP13_03755 PF00033 Cytochrome b/b6/petB EP13_03760 PF02167 Cytochrome C1 family EP13_03765 PF00043 Glutathione S-transferase, C-terminal domain EP13_03765 PF02798 Glutathione S-transferase, N-terminal domain EP13_03770 PF04386 Stringent starvation protein B EP13_03785 PF00072 Response regulator receiver domain EP13_03785 PF00486 Transcriptional regulatory protein, C terminal EP13_03790 PF03448 MgtE intracellular N domain EP13_03790 PF01769 Divalent cation transporter EP13_03790 PF00571 CBS domain EP13_03795 PF00381 PTS HPr component phosphorylation site EP13_03800 PF03668 P-loop ATPase protein family EP13_03805 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EP13_03810 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EP13_03815 PF04552 Sigma-54, DNA binding domain EP13_03815 PF00309 Sigma-54 factor, Activator interacting domain (AID) EP13_03815 PF04963 Sigma-54 factor, core binding domain EP13_03820 PF00005 ABC transporter EP13_03820 PF12399 Branched-chain amino acid ATP-binding cassette transporter EP13_03840 PF00571 CBS domain EP13_03840 PF01380 SIS domain EP13_03845 PF01699 Sodium/calcium exchanger protein EP13_03850 PF00005 ABC transporter EP13_03855 PF02405 Permease MlaE EP13_03860 PF02470 MlaD protein EP13_03865 PF05494 MlaC protein EP13_03875 PF01722 BolA-like protein EP13_03880 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EP13_03885 PF13180 PDZ domain EP13_03890 PF13180 PDZ domain EP13_03890 PF00595 PDZ domain EP13_03905 PF03969 AFG1-like ATPase EP13_03910 PF01709 Transcriptional regulator EP13_03965 PF05593 RHS Repeat EP13_03965 PF03527 RHS protein EP13_04005 PF07549 SecD/SecF GG Motif EP13_04005 PF02355 Protein export membrane protein EP13_04005 PF07549 SecD/SecF GG Motif EP13_04005 PF02355 Protein export membrane protein EP13_04010 PF00999 Sodium/hydrogen exchanger family EP13_04010 PF03471 Transporter associated domain EP13_04010 PF02080 TrkA-C domain EP13_04015 PF00072 Response regulator receiver domain EP13_04015 PF09308 LuxQ, periplasmic EP13_04015 PF00512 His Kinase A (phospho-acceptor) domain EP13_04015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_04030 PF00465 Iron-containing alcohol dehydrogenase EP13_04050 PF00438 S-adenosylmethionine synthetase, N-terminal domain EP13_04050 PF02773 S-adenosylmethionine synthetase, C-terminal domain EP13_04050 PF02772 S-adenosylmethionine synthetase, central domain EP13_04055 PF02779 Transketolase, pyrimidine binding domain EP13_04055 PF02780 Transketolase, C-terminal domain EP13_04055 PF00456 Transketolase, thiamine diphosphate binding domain EP13_04060 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EP13_04060 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP13_04065 PF00162 Phosphoglycerate kinase EP13_04070 PF00274 Fructose-bisphosphate aldolase class-I EP13_04075 PF02541 Ppx/GppA phosphatase family EP13_04080 PF02503 Polyphosphate kinase middle domain EP13_04080 PF13090 Polyphosphate kinase C-terminal domain 2 EP13_04080 PF17941 Polyphosphate kinase C-terminal domain 1 EP13_04080 PF13089 Polyphosphate kinase N-terminal domain EP13_04090 PF00528 Binding-protein-dependent transport system inner membrane component EP13_04095 PF00528 Binding-protein-dependent transport system inner membrane component EP13_04100 PF00005 ABC transporter EP13_04105 PF01895 PhoU domain EP13_04110 PF01384 Phosphate transporter family EP13_04115 PF00582 Universal stress protein family EP13_04120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_04120 PF03466 LysR substrate binding domain EP13_04130 PF03006 Haemolysin-III related EP13_04135 PF01047 MarR family EP13_04140 PF02566 OsmC-like protein EP13_04150 PF09186 Domain of unknown function (DUF1949) EP13_04150 PF01205 Uncharacterized protein family UPF0029 EP13_04155 PF13426 PAS domain EP13_04155 PF08447 PAS fold EP13_04155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_04165 PF13476 AAA domain EP13_04195 PF00043 Glutathione S-transferase, C-terminal domain EP13_04195 PF02798 Glutathione S-transferase, N-terminal domain EP13_04220 PF01869 BadF/BadG/BcrA/BcrD ATPase family EP13_04230 PF00005 ABC transporter EP13_04230 PF12848 ABC transporter EP13_04245 PF01979 Amidohydrolase family EP13_04275 PF00732 GMC oxidoreductase EP13_04275 PF05199 GMC oxidoreductase EP13_04290 PF00356 Bacterial regulatory proteins, lacI family EP13_04330 PF02384 N-6 DNA Methylase EP13_04335 PF01420 Type I restriction modification DNA specificity domain EP13_04345 PF18766 SWI2/SNF2 ATPase EP13_04345 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) EP13_04345 PF11867 Domain of unknown function (DUF3387) EP13_04400 PF04172 LrgB-like family EP13_04405 PF00072 Response regulator receiver domain EP13_04430 PF06969 HemN C-terminal domain EP13_04430 PF04055 Radical SAM superfamily EP13_04435 PF01725 Ham1 family EP13_04440 PF00271 Helicase conserved C-terminal domain EP13_04440 PF00270 DEAD/DEAH box helicase EP13_04445 PF12627 Probable RNA and SrmB- binding site of polymerase A EP13_04445 PF01743 Poly A polymerase head domain EP13_04450 PF13401 AAA domain EP13_04450 PF01471 Putative peptidoglycan binding domain EP13_04460 PF01966 HD domain EP13_04460 PF11871 Domain of unknown function (DUF3391) EP13_04465 PF00694 Aconitase C-terminal domain EP13_04470 PF00330 Aconitase family (aconitate hydratase) EP13_04475 PF00180 Isocitrate/isopropylmalate dehydrogenase EP13_04480 PF00682 HMGL-like EP13_04480 PF08502 LeuA allosteric (dimerisation) domain EP13_04500 PF03952 Enolase, N-terminal domain EP13_04500 PF00113 Enolase, C-terminal TIM barrel domain EP13_04505 PF00117 Glutamine amidotransferase class-I EP13_04505 PF06418 CTP synthase N-terminus EP13_04510 PF00488 MutS domain V EP13_04510 PF05190 MutS family domain IV EP13_04510 PF05192 MutS domain III EP13_04510 PF01624 MutS domain I EP13_04510 PF05188 MutS domain II EP13_04515 PF02464 Competence-damaged protein EP13_04520 PF00154 recA bacterial DNA recombination protein EP13_04535 PF00005 ABC transporter EP13_04540 PF12679 ABC-2 family transporter protein EP13_04555 PF00005 ABC transporter EP13_04560 PF03379 CcmB protein EP13_04565 PF01578 Cytochrome C assembly protein EP13_04570 PF04995 Heme exporter protein D (CcmD) EP13_04575 PF03100 CcmE EP13_04580 PF01578 Cytochrome C assembly protein EP13_04580 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal EP13_04585 PF08534 Redoxin EP13_04590 PF03918 Cytochrome C biogenesis protein EP13_04600 PF04333 MlaA lipoprotein EP13_04605 PF16363 GDP-mannose 4,6 dehydratase EP13_04615 PF00854 POT family EP13_04625 PF00005 ABC transporter EP13_04635 PF10531 SLBB domain EP13_04635 PF02563 Polysaccharide biosynthesis/export protein EP13_04645 PF00953 Glycosyl transferase family 4 EP13_04650 PF00535 Glycosyl transferase family 2 EP13_04660 PF00483 Nucleotidyl transferase EP13_04665 PF10531 SLBB domain EP13_04670 PF00180 Isocitrate/isopropylmalate dehydrogenase EP13_04670 PF18324 Hypothetical protein TT1725 EP13_04685 PF11892 Domain of unknown function (DUF3412) EP13_04685 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases EP13_04685 PF03641 Possible lysine decarboxylase EP13_04690 PF00072 Response regulator receiver domain EP13_04690 PF00990 Diguanylate cyclase, GGDEF domain EP13_04695 PF14489 QueF-like protein EP13_04695 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term EP13_04700 PF07348 Syd protein (SUKH-2) EP13_04725 PF07715 TonB-dependent Receptor Plug Domain EP13_04725 PF00593 TonB dependent receptor EP13_04750 PF00849 RNA pseudouridylate synthase EP13_04755 PF00258 Flavodoxin EP13_04760 PF00132 Bacterial transferase hexapeptide (six repeats) EP13_04760 PF14602 Hexapeptide repeat of succinyl-transferase EP13_04760 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal EP13_04765 PF01909 Nucleotidyltransferase domain EP13_04765 PF08335 GlnD PII-uridylyltransferase EP13_04765 PF01842 ACT domain EP13_04765 PF01966 HD domain EP13_04770 PF00557 Metallopeptidase family M24 EP13_04775 PF00318 Ribosomal protein S2 EP13_04780 PF00889 Elongation factor TS EP13_04785 PF00696 Amino acid kinase family EP13_04790 PF01765 Ribosome recycling factor EP13_04795 PF01255 Putative undecaprenyl diphosphate synthase EP13_04805 PF13288 DXP reductoisomerase C-terminal domain EP13_04805 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain EP13_04805 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase EP13_04810 PF02163 Peptidase family M50 EP13_04810 PF17820 PDZ domain EP13_04815 PF07244 Surface antigen variable number repeat EP13_04815 PF01103 Surface antigen EP13_04820 PF03938 Outer membrane protein (OmpH-like) EP13_04825 PF07977 FabA-like domain EP13_04830 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 EP13_04830 PF00132 Bacterial transferase hexapeptide (six repeats) EP13_04835 PF02684 Lipid-A-disaccharide synthetase EP13_04840 PF01351 Ribonuclease HII EP13_04845 PF01336 OB-fold nucleic acid binding domain EP13_04845 PF02811 PHP domain EP13_04845 PF14579 Helix-hairpin-helix motif EP13_04845 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EP13_04845 PF07733 Bacterial DNA polymerase III alpha NTPase domain EP13_04850 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EP13_04860 PF03707 Bacterial signalling protein N terminal repeat EP13_04860 PF00990 Diguanylate cyclase, GGDEF domain EP13_04860 PF00563 EAL domain EP13_04865 PF00999 Sodium/hydrogen exchanger family EP13_04865 PF02080 TrkA-C domain EP13_04865 PF02254 TrkA-N domain EP13_04875 PF14437 MafB19-like deaminase EP13_04880 PF01464 Transglycosylase SLT domain EP13_04880 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP13_04895 PF01713 Smr domain EP13_04910 PF00691 OmpA family EP13_04910 PF05736 OprF membrane domain EP13_04915 PF03412 Peptidase C39 family EP13_04915 PF00664 ABC transporter transmembrane region EP13_04915 PF00005 ABC transporter EP13_04920 PF00529 HlyD membrane-fusion protein of T1SS EP13_04920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP13_04925 PF00196 Bacterial regulatory proteins, luxR family EP13_04925 PF00072 Response regulator receiver domain EP13_04965 PF01584 CheW-like domain EP13_04965 PF00072 Response regulator receiver domain EP13_04970 PF03705 CheR methyltransferase, all-alpha domain EP13_04970 PF01739 CheR methyltransferase, SAM binding domain EP13_04975 PF00460 Flagella basal body rod protein EP13_04980 PF00460 Flagella basal body rod protein EP13_04980 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EP13_04985 PF13861 FlgD Tudor-like domain EP13_04985 PF13860 FlgD Ig-like domain EP13_04985 PF03963 Flagellar hook capping protein - N-terminal region EP13_04990 PF00460 Flagella basal body rod protein EP13_04990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EP13_04990 PF07559 Flagellar basal body protein FlaE EP13_04995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EP13_04995 PF00460 Flagella basal body rod protein EP13_05000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EP13_05000 PF00460 Flagella basal body rod protein EP13_05005 PF02107 Flagellar L-ring protein EP13_05010 PF02119 Flagellar P-ring protein EP13_05015 PF10135 Rod binding protein EP13_05015 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EP13_05035 PF07196 Flagellin hook IN motif EP13_05035 PF00700 Bacterial flagellin C-terminal helical region EP13_05035 PF00669 Bacterial flagellin N-terminal helical region EP13_05040 PF00700 Bacterial flagellin C-terminal helical region EP13_05040 PF07196 Flagellin hook IN motif EP13_05040 PF00669 Bacterial flagellin N-terminal helical region EP13_05045 PF00700 Bacterial flagellin C-terminal helical region EP13_05045 PF00669 Bacterial flagellin N-terminal helical region EP13_05045 PF07196 Flagellin hook IN motif EP13_05050 PF03646 FlaG protein EP13_05055 PF07196 Flagellin hook IN motif EP13_05055 PF02465 Flagellar hook-associated protein 2 N-terminus EP13_05055 PF07195 Flagellar hook-associated protein 2 C-terminus EP13_05060 PF02561 Flagellar protein FliS EP13_05070 PF02719 Polysaccharide biosynthesis protein EP13_05075 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EP13_05080 PF02348 Cytidylyltransferase EP13_05085 PF08666 SAF domain EP13_05085 PF03102 NeuB family EP13_05135 PF01501 Glycosyl transferase family 8 EP13_05140 PF00535 Glycosyl transferase family 2 EP13_05175 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EP13_05185 PF12445 Flagellin protein EP13_05185 PF00669 Bacterial flagellin N-terminal helical region EP13_05185 PF00700 Bacterial flagellin C-terminal helical region EP13_05190 PF00158 Sigma-54 interaction domain EP13_05190 PF00072 Response regulator receiver domain EP13_05190 PF02954 Bacterial regulatory protein, Fis family EP13_05195 PF00512 His Kinase A (phospho-acceptor) domain EP13_05195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_05195 PF00989 PAS fold EP13_05200 PF00158 Sigma-54 interaction domain EP13_05200 PF00072 Response regulator receiver domain EP13_05200 PF02954 Bacterial regulatory protein, Fis family EP13_05205 PF02049 Flagellar hook-basal body complex protein FliE EP13_05210 PF01514 Secretory protein of YscJ/FliF family EP13_05210 PF08345 Flagellar M-ring protein C-terminal EP13_05215 PF01706 FliG C-terminal domain EP13_05215 PF14841 FliG middle domain EP13_05215 PF14842 FliG N-terminal domain EP13_05225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP13_05225 PF18269 T3SS EscN ATPase C-terminal domain EP13_05245 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EP13_05245 PF02154 Flagellar motor switch protein FliM EP13_05250 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EP13_05255 PF04347 Flagellar biosynthesis protein, FliO EP13_05260 PF00813 FliP family EP13_05265 PF01313 Bacterial export proteins, family 3 EP13_05270 PF01311 Bacterial export proteins, family 1 EP13_05275 PF01312 FlhB HrpN YscU SpaS Family EP13_05280 PF00771 FHIPEP family EP13_05285 PF00448 SRP54-type protein, GTPase domain EP13_05290 PF10609 NUBPL iron-transfer P-loop NTPase EP13_05295 PF04542 Sigma-70 region 2 EP13_05295 PF04545 Sigma-70, region 4 EP13_05295 PF04539 Sigma-70 region 3 EP13_05300 PF00072 Response regulator receiver domain EP13_05305 PF04344 Chemotaxis phosphatase, CheZ EP13_05310 PF07194 P2 response regulator binding domain EP13_05310 PF01627 Hpt domain EP13_05310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_05310 PF02895 Signal transducing histidine kinase, homodimeric domain EP13_05310 PF01584 CheW-like domain EP13_05320 PF13614 AAA domain EP13_05330 PF01584 CheW-like domain EP13_05340 PF04204 Homoserine O-succinyltransferase EP13_05355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_05355 PF02743 Cache domain EP13_05355 PF00672 HAMP domain EP13_05360 PF06865 Pyrimidine/purine nucleoside phosphorylase EP13_05365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_05365 PF03466 LysR substrate binding domain EP13_05370 PF03466 LysR substrate binding domain EP13_05370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_05375 PF00484 Carbonic anhydrase EP13_05380 PF00916 Sulfate permease family EP13_05380 PF01740 STAS domain EP13_05385 PF05649 Peptidase family M13 EP13_05385 PF01431 Peptidase family M13 EP13_05395 PF02631 RecX family EP13_05400 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EP13_05400 PF01411 tRNA synthetases class II (A) EP13_05400 PF02272 DHHA1 domain EP13_05405 PF02599 Global regulator protein family EP13_05430 PF02436 Conserved carboxylase domain EP13_05430 PF00682 HMGL-like EP13_05430 PF00364 Biotin-requiring enzyme EP13_05435 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit EP13_05440 PF00005 ABC transporter EP13_05445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EP13_05445 PF00005 ABC transporter EP13_05450 PF00528 Binding-protein-dependent transport system inner membrane component EP13_05450 PF12911 N-terminal TM domain of oligopeptide transport permease C EP13_05455 PF00528 Binding-protein-dependent transport system inner membrane component EP13_05460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EP13_05465 PF02954 Bacterial regulatory protein, Fis family EP13_05465 PF00158 Sigma-54 interaction domain EP13_05470 PF04012 PspA/IM30 family EP13_05475 PF06667 Phage shock protein B EP13_05490 PF00351 Biopterin-dependent aromatic amino acid hydroxylase EP13_05500 PF00158 Sigma-54 interaction domain EP13_05500 PF18024 Helix-turn-helix domain EP13_05510 PF02798 Glutathione S-transferase, N-terminal domain EP13_05510 PF14497 Glutathione S-transferase, C-terminal domain EP13_05515 PF01037 Lrp/AsnC ligand binding domain EP13_05520 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EP13_05520 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EP13_05530 PF00593 TonB dependent receptor EP13_05550 PF01618 MotA/TolQ/ExbB proton channel family EP13_05555 PF01618 MotA/TolQ/ExbB proton channel family EP13_05560 PF02472 Biopolymer transport protein ExbD/TolR EP13_05565 PF03544 Gram-negative bacterial TonB protein C-terminal EP13_05575 PF17176 tRNA-binding domain EP13_05575 PF05127 Helicase EP13_05575 PF13718 GNAT acetyltransferase 2 EP13_05575 PF08351 Domain of unknown function (DUF1726) EP13_05600 PF01636 Phosphotransferase enzyme family EP13_05615 PF00583 Acetyltransferase (GNAT) family EP13_05630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_05630 PF03466 LysR substrate binding domain EP13_05635 PF07690 Major Facilitator Superfamily EP13_05640 PF00248 Aldo/keto reductase family EP13_05645 PF00990 Diguanylate cyclase, GGDEF domain EP13_05650 PF03144 Elongation factor Tu domain 2 EP13_05650 PF00009 Elongation factor Tu GTP binding domain EP13_05650 PF16658 Class II release factor RF3, C-terminal domain EP13_05655 PF03485 Arginyl tRNA synthetase N terminal domain EP13_05655 PF05746 DALR anticodon binding domain EP13_05655 PF00750 tRNA synthetases class I (R) EP13_05660 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region EP13_05660 PF00326 Prolyl oligopeptidase family EP13_05670 PF01156 Inosine-uridine preferring nucleoside hydrolase EP13_05675 PF01979 Amidohydrolase family EP13_05680 PF00291 Pyridoxal-phosphate dependent enzyme EP13_05690 PF00578 AhpC/TSA family EP13_05700 PF00487 Fatty acid desaturase EP13_05705 PF00970 Oxidoreductase FAD-binding domain EP13_05705 PF00111 2Fe-2S iron-sulfur cluster binding domain EP13_05705 PF00175 Oxidoreductase NAD-binding domain EP13_05925 PF01548 Transposase EP13_05925 PF02371 Transposase IS116/IS110/IS902 family EP13_05960 PF07693 KAP family P-loop domain EP13_06015 PF00472 RF-1 domain EP13_06015 PF03462 PCRF domain EP13_06020 PF00152 tRNA synthetases class II (D, K and N) EP13_06020 PF01336 OB-fold nucleic acid binding domain EP13_06025 PF02558 Ketopantoate reductase PanE/ApbA EP13_06025 PF08546 Ketopantoate reductase PanE/ApbA C terminal EP13_06040 PF00675 Insulinase (Peptidase family M16) EP13_06040 PF05193 Peptidase M16 inactive domain EP13_06045 PF04262 Glutamate-cysteine ligase EP13_06055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP13_06060 PF00005 ABC transporter EP13_06070 PF02687 FtsX-like permease family EP13_06070 PF12704 MacB-like periplasmic core domain EP13_06070 PF00005 ABC transporter EP13_06075 PF00158 Sigma-54 interaction domain EP13_06075 PF02954 Bacterial regulatory protein, Fis family EP13_06075 PF00072 Response regulator receiver domain EP13_06080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_06080 PF00512 His Kinase A (phospho-acceptor) domain EP13_06080 PF00989 PAS fold EP13_06090 PF01713 Smr domain EP13_06095 PF05175 Methyltransferase small domain EP13_06100 PF01264 Chorismate synthase EP13_06115 PF04293 SpoVR like protein EP13_06120 PF04285 Protein of unknown function (DUF444) EP13_06125 PF06798 PrkA serine protein kinase C-terminal domain EP13_06125 PF08298 PrkA AAA domain EP13_06135 PF00462 Glutaredoxin EP13_06140 PF07715 TonB-dependent Receptor Plug Domain EP13_06140 PF00593 TonB dependent receptor EP13_06160 PF04324 BFD-like [2Fe-2S] binding domain EP13_06165 PF00929 Exonuclease EP13_06170 PF00691 OmpA family EP13_06170 PF18393 MotY N-terminal domain EP13_06175 PF03009 Glycerophosphoryl diester phosphodiesterase family EP13_06180 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP13_06185 PF00313 'Cold-shock' DNA-binding domain EP13_06195 PF00990 Diguanylate cyclase, GGDEF domain EP13_06195 PF17151 Periplasmic sensor domain EP13_06200 PF18500 CadC C-terminal domain 1 EP13_06200 PF00486 Transcriptional regulatory protein, C terminal EP13_06235 PF04960 Glutaminase EP13_06245 PF00144 Beta-lactamase EP13_06280 PF04299 Putative FMN-binding domain EP13_06290 PF00633 Helix-hairpin-helix motif EP13_06290 PF00730 HhH-GPD superfamily base excision DNA repair protein EP13_06290 PF10576 Iron-sulfur binding domain of endonuclease III EP13_06300 PF00730 HhH-GPD superfamily base excision DNA repair protein EP13_06300 PF10576 Iron-sulfur binding domain of endonuclease III EP13_06300 PF00633 Helix-hairpin-helix motif EP13_06305 PF02508 Rnf-Nqr subunit, membrane protein EP13_06310 PF04205 FMN-binding domain EP13_06315 PF03116 NQR2, RnfD, RnfE family EP13_06320 PF10531 SLBB domain EP13_06320 PF13375 RnfC Barrel sandwich hybrid domain EP13_06320 PF12838 4Fe-4S dicluster domain EP13_06320 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EP13_06325 PF04060 Putative Fe-S cluster EP13_06330 PF02508 Rnf-Nqr subunit, membrane protein EP13_06345 PF01554 MatE EP13_06350 PF12344 Ultra-violet resistance protein B EP13_06350 PF02151 UvrB/uvrC motif EP13_06350 PF04851 Type III restriction enzyme, res subunit EP13_06350 PF17757 UvrB interaction domain EP13_06350 PF00271 Helicase conserved C-terminal domain EP13_06370 PF06508 Queuosine biosynthesis protein QueC EP13_06375 PF04055 Radical SAM superfamily EP13_06385 PF13537 Glutamine amidotransferase domain EP13_06385 PF00733 Asparagine synthase EP13_06410 PF03600 Citrate transporter EP13_06410 PF02080 TrkA-C domain EP13_06415 PF00009 Elongation factor Tu GTP binding domain EP13_06420 PF00459 Inositol monophosphatase family EP13_06430 PF01507 Phosphoadenosine phosphosulfate reductase family EP13_06435 PF00474 Sodium:solute symporter family EP13_06450 PF08281 Sigma-70, region 4 EP13_06450 PF04542 Sigma-70 region 2 EP13_06465 PF00092 von Willebrand factor type A domain EP13_06465 PF07584 Aerotolerance regulator N-terminal EP13_06470 PF00092 von Willebrand factor type A domain EP13_06480 PF01882 Protein of unknown function DUF58 EP13_06485 PF07726 ATPase family associated with various cellular activities (AAA) EP13_06485 PF17863 AAA lid domain EP13_06490 PF02803 Thiolase, C-terminal domain EP13_06490 PF00108 Thiolase, N-terminal domain EP13_06495 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP13_06495 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP13_06495 PF00378 Enoyl-CoA hydratase/isomerase EP13_06515 PF03707 Bacterial signalling protein N terminal repeat EP13_06515 PF00563 EAL domain EP13_06515 PF00990 Diguanylate cyclase, GGDEF domain EP13_06520 PF00675 Insulinase (Peptidase family M16) EP13_06520 PF05193 Peptidase M16 inactive domain EP13_06525 PF00300 Histidine phosphatase superfamily (branch 1) EP13_06535 PF03471 Transporter associated domain EP13_06535 PF01595 Cyclin M transmembrane N-terminal domain EP13_06535 PF00571 CBS domain EP13_06540 PF01578 Cytochrome C assembly protein EP13_06550 PF02978 Signal peptide binding domain EP13_06550 PF02881 SRP54-type protein, helical bundle domain EP13_06550 PF00448 SRP54-type protein, GTPase domain EP13_06590 PF00873 AcrB/AcrD/AcrF family EP13_06595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP13_06600 PF00005 ABC transporter EP13_06600 PF00664 ABC transporter transmembrane region EP13_06605 PF01053 Cys/Met metabolism PLP-dependent enzyme EP13_06620 PF00886 Ribosomal protein S16 EP13_06625 PF05239 PRC-barrel domain EP13_06625 PF01782 RimM N-terminal domain EP13_06630 PF01746 tRNA (Guanine-1)-methyltransferase EP13_06635 PF01245 Ribosomal protein L19 EP13_06640 PF03458 UPF0126 domain EP13_06650 PF00378 Enoyl-CoA hydratase/isomerase EP13_06655 PF00793 DAHP synthetase I family EP13_06660 PF02153 Prephenate dehydrogenase EP13_06660 PF01817 Chorismate mutase type II EP13_06665 PF00800 Prephenate dehydratase EP13_06665 PF01817 Chorismate mutase type II EP13_06670 PF00072 Response regulator receiver domain EP13_06675 PF01253 Translation initiation factor SUI1 EP13_06685 PF00486 Transcriptional regulatory protein, C terminal EP13_06685 PF00072 Response regulator receiver domain EP13_06695 PF00990 Diguanylate cyclase, GGDEF domain EP13_06695 PF03707 Bacterial signalling protein N terminal repeat EP13_06695 PF00563 EAL domain EP13_06705 PF00512 His Kinase A (phospho-acceptor) domain EP13_06705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_06715 PF00072 Response regulator receiver domain EP13_06715 PF00158 Sigma-54 interaction domain EP13_06720 PF01904 Protein of unknown function DUF72 EP13_06725 PF02938 GAD domain EP13_06725 PF00152 tRNA synthetases class II (D, K and N) EP13_06725 PF01336 OB-fold nucleic acid binding domain EP13_06730 PF00293 NUDIX domain EP13_06745 PF17864 RuvB AAA lid domain EP13_06745 PF05496 Holliday junction DNA helicase RuvB P-loop domain EP13_06745 PF05491 RuvB C-terminal winged helix domain EP13_06750 PF03061 Thioesterase superfamily EP13_06755 PF01618 MotA/TolQ/ExbB proton channel family EP13_06760 PF02472 Biopolymer transport protein ExbD/TolR EP13_06770 PF07676 WD40-like Beta Propeller Repeat EP13_06770 PF04052 TolB amino-terminal domain EP13_06775 PF00691 OmpA family EP13_06780 PF16331 TolA binding protein trimerisation EP13_06780 PF13174 Tetratricopeptide repeat EP13_06800 PF02445 Quinolinate synthetase A protein EP13_06820 PF01863 Protein of unknown function DUF45 EP13_06835 PF13419 Haloacid dehalogenase-like hydrolase EP13_06845 PF00675 Insulinase (Peptidase family M16) EP13_06845 PF05193 Peptidase M16 inactive domain EP13_06850 PF00072 Response regulator receiver domain EP13_06850 PF09308 LuxQ, periplasmic EP13_06850 PF00512 His Kinase A (phospho-acceptor) domain EP13_06850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_06860 PF02774 Semialdehyde dehydrogenase, dimerisation domain EP13_06860 PF01118 Semialdehyde dehydrogenase, NAD binding domain EP13_06870 PF00106 short chain dehydrogenase EP13_06875 PF06628 Catalase-related immune-responsive EP13_06875 PF00199 Catalase EP13_06875 PF18011 C-terminal domain found in long catalases EP13_06880 PF01292 Prokaryotic cytochrome b561 EP13_06885 PF03466 LysR substrate binding domain EP13_06885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_06890 PF08240 Alcohol dehydrogenase GroES-like domain EP13_06890 PF00698 Acyl transferase domain EP13_06890 PF16197 Ketoacyl-synthetase C-terminal extension EP13_06890 PF00550 Phosphopantetheine attachment site EP13_06890 PF02801 Beta-ketoacyl synthase, C-terminal domain EP13_06890 PF08659 KR domain EP13_06890 PF14765 Polyketide synthase dehydratase EP13_06890 PF00109 Beta-ketoacyl synthase, N-terminal domain EP13_06900 PF00873 AcrB/AcrD/AcrF family EP13_06915 PF00873 AcrB/AcrD/AcrF family EP13_06920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP13_06925 PF00990 Diguanylate cyclase, GGDEF domain EP13_06925 PF00563 EAL domain EP13_06925 PF03707 Bacterial signalling protein N terminal repeat EP13_06935 PF02470 MlaD protein EP13_06940 PF04403 Paraquat-inducible protein A EP13_06960 PF01381 Helix-turn-helix EP13_06965 PF13411 MerR HTH family regulatory protein EP13_06980 PF16916 Dimerisation domain of Zinc Transporter EP13_06980 PF01545 Cation efflux family EP13_06995 PF00529 HlyD membrane-fusion protein of T1SS EP13_06995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP13_07000 PF00873 AcrB/AcrD/AcrF family EP13_07005 PF00152 tRNA synthetases class II (D, K and N) EP13_07005 PF01336 OB-fold nucleic acid binding domain EP13_07015 PF01699 Sodium/calcium exchanger protein EP13_07020 PF18030 RimK PreATP-grasp domain EP13_07020 PF08443 RimK-like ATP-grasp domain EP13_07045 PF06968 Biotin and Thiamin Synthesis associated domain EP13_07045 PF04055 Radical SAM superfamily EP13_07050 PF00155 Aminotransferase class I and II EP13_07065 PF03575 Peptidase family S51 EP13_07070 PF01451 Low molecular weight phosphotyrosine protein phosphatase EP13_07075 PF01474 Class-II DAHP synthetase family EP13_07085 PF00005 ABC transporter EP13_07085 PF13732 Domain of unknown function (DUF4162) EP13_07095 PF04397 LytTr DNA-binding domain EP13_07095 PF00072 Response regulator receiver domain EP13_07105 PF00664 ABC transporter transmembrane region EP13_07105 PF00005 ABC transporter EP13_07110 PF04055 Radical SAM superfamily EP13_07110 PF06463 Molybdenum Cofactor Synthesis C EP13_07140 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP13_07180 PF01207 Dihydrouridine synthase (Dus) EP13_07185 PF01979 Amidohydrolase family EP13_07205 PF13472 GDSL-like Lipase/Acylhydrolase family EP13_07210 PF00005 ABC transporter EP13_07220 PF01370 NAD dependent epimerase/dehydratase family EP13_07220 PF08338 Domain of unknown function (DUF1731) EP13_07225 PF02152 Dihydroneopterin aldolase EP13_07230 PF01594 AI-2E family transporter EP13_07235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_07235 PF08918 PhoQ Sensor EP13_07240 PF00486 Transcriptional regulatory protein, C terminal EP13_07240 PF00072 Response regulator receiver domain EP13_07255 PF03795 YCII-related domain EP13_07265 PF00291 Pyridoxal-phosphate dependent enzyme EP13_07270 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase EP13_07270 PF00218 Indole-3-glycerol phosphate synthase EP13_07275 PF00591 Glycosyl transferase family, a/b domain EP13_07275 PF02885 Glycosyl transferase family, helical bundle domain EP13_07280 PF00117 Glutamine amidotransferase class-I EP13_07285 PF04715 Anthranilate synthase component I, N terminal region EP13_07285 PF00425 chorismate binding enzyme EP13_07290 PF02811 PHP domain EP13_07295 PF01300 Telomere recombination EP13_07300 PF02616 Segregation and condensation protein ScpA EP13_07305 PF04079 Segregation and condensation complex subunit ScpB EP13_07310 PF01479 S4 domain EP13_07310 PF00849 RNA pseudouridylate synthase EP13_07315 PF00248 Aldo/keto reductase family EP13_07320 PF12464 Maltose acetyltransferase EP13_07320 PF14602 Hexapeptide repeat of succinyl-transferase EP13_07330 PF03960 ArsC family EP13_07335 PF04286 Protein of unknown function (DUF445) EP13_07340 PF05724 Thiopurine S-methyltransferase (TPMT) EP13_07345 PF04355 SmpA / OmlA family EP13_07350 PF02463 RecF/RecN/SMC N terminal domain EP13_07360 PF00210 Ferritin-like domain EP13_07390 PF07715 TonB-dependent Receptor Plug Domain EP13_07390 PF00593 TonB dependent receptor EP13_07395 PF00196 Bacterial regulatory proteins, luxR family EP13_07395 PF00072 Response regulator receiver domain EP13_07405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_07405 PF00989 PAS fold EP13_07405 PF00512 His Kinase A (phospho-acceptor) domain EP13_07410 PF01025 GrpE EP13_07415 PF00012 Hsp70 protein EP13_07420 PF00226 DnaJ domain EP13_07420 PF00684 DnaJ central domain EP13_07420 PF01556 DnaJ C terminal domain EP13_07425 PF01322 Cytochrome C' EP13_07430 PF03707 Bacterial signalling protein N terminal repeat EP13_07430 PF00990 Diguanylate cyclase, GGDEF domain EP13_07430 PF00563 EAL domain EP13_07440 PF01113 Dihydrodipicolinate reductase, N-terminus EP13_07440 PF05173 Dihydrodipicolinate reductase, C-terminus EP13_07445 PF00117 Glutamine amidotransferase class-I EP13_07445 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EP13_07450 PF02142 MGS-like domain EP13_07450 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EP13_07450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP13_07455 PF03449 Transcription elongation factor, N-terminal EP13_07455 PF01272 Transcription elongation factor, GreA/GreB, C-term EP13_07460 PF00672 HAMP domain EP13_07460 PF12729 Four helix bundle sensory module for signal transduction EP13_07460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_07470 PF00011 Hsp20/alpha crystallin family EP13_07475 PF00871 Acetokinase family EP13_07480 PF07085 DRTGG domain EP13_07480 PF01515 Phosphate acetyl/butaryl transferase EP13_07485 PF00795 Carbon-nitrogen hydrolase EP13_07490 PF00571 CBS domain EP13_07490 PF03471 Transporter associated domain EP13_07495 PF02397 Bacterial sugar transferase EP13_07500 PF01370 NAD dependent epimerase/dehydratase family EP13_07510 PF02130 Uncharacterized protein family UPF0054 EP13_07515 PF02562 PhoH-like protein EP13_07520 PF04055 Radical SAM superfamily EP13_07520 PF01938 TRAM domain EP13_07520 PF00919 Uncharacterized protein family UPF0004 EP13_07525 PF01494 FAD binding domain EP13_07555 PF03061 Thioesterase superfamily EP13_07560 PF01613 Flavin reductase like domain EP13_07565 PF01235 Sodium:alanine symporter family EP13_07625 PF01926 50S ribosome-binding GTPase EP13_07625 PF06071 Protein of unknown function (DUF933) EP13_07630 PF01195 Peptidyl-tRNA hydrolase EP13_07635 PF01386 Ribosomal L25p family EP13_07635 PF14693 Ribosomal protein TL5, C-terminal domain EP13_07655 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EP13_07655 PF14572 Phosphoribosyl synthetase-associated domain EP13_07665 PF00288 GHMP kinases N terminal domain EP13_07665 PF08544 GHMP kinases C terminal EP13_07670 PF03550 Outer membrane lipoprotein LolB EP13_07675 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain EP13_07675 PF01488 Shikimate / quinate 5-dehydrogenase EP13_07675 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain EP13_07680 PF03462 PCRF domain EP13_07680 PF00472 RF-1 domain EP13_07685 PF17827 PrmC N-terminal domain EP13_07685 PF13847 Methyltransferase domain EP13_07690 PF11849 Domain of unknown function (DUF3369) EP13_07695 PF04247 Invasion gene expression up-regulator, SirB EP13_07710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_07710 PF03466 LysR substrate binding domain EP13_07720 PF04241 Protein of unknown function (DUF423) EP13_07725 PF18125 RlmM ferredoxin-like domain EP13_07725 PF01728 FtsJ-like methyltransferase EP13_07740 PF02560 Cyanate lyase C-terminal domain EP13_07745 PF03793 PASTA domain EP13_07745 PF00069 Protein kinase domain EP13_07750 PF01226 Formate/nitrite transporter EP13_07755 PF17206 SeqA protein N-terminal domain EP13_07755 PF03925 SeqA protein C-terminal domain EP13_07760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP13_07760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP13_07760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP13_07760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP13_07765 PF00343 Carbohydrate phosphorylase EP13_07770 PF00990 Diguanylate cyclase, GGDEF domain EP13_07770 PF00563 EAL domain EP13_07770 PF03707 Bacterial signalling protein N terminal repeat EP13_07775 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EP13_07785 PF01906 Putative heavy-metal-binding EP13_07800 PF01546 Peptidase family M20/M25/M40 EP13_07800 PF07687 Peptidase dimerisation domain EP13_07805 PF03960 ArsC family EP13_07825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP13_07830 PF04209 homogentisate 1,2-dioxygenase EP13_07845 PF12327 FtsZ family, C-terminal domain EP13_07845 PF00091 Tubulin/FtsZ family, GTPase domain EP13_07855 PF05231 MASE1 EP13_07855 PF13426 PAS domain EP13_07855 PF00563 EAL domain EP13_07855 PF00990 Diguanylate cyclase, GGDEF domain EP13_07855 PF08447 PAS fold EP13_07855 PF08448 PAS fold EP13_07865 PF01979 Amidohydrolase family EP13_07870 PF00576 HIUase/Transthyretin family EP13_07885 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EP13_07885 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EP13_07890 PF01799 [2Fe-2S] binding domain EP13_07890 PF00111 2Fe-2S iron-sulfur cluster binding domain EP13_07910 PF00860 Permease family EP13_07925 PF00563 EAL domain EP13_07925 PF03707 Bacterial signalling protein N terminal repeat EP13_07925 PF13188 PAS domain EP13_07925 PF00990 Diguanylate cyclase, GGDEF domain EP13_07930 PF00072 Response regulator receiver domain EP13_07930 PF00990 Diguanylate cyclase, GGDEF domain EP13_07935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_07935 PF00512 His Kinase A (phospho-acceptor) domain EP13_07935 PF09308 LuxQ, periplasmic EP13_07935 PF00072 Response regulator receiver domain EP13_07955 PF07715 TonB-dependent Receptor Plug Domain EP13_07955 PF00593 TonB dependent receptor EP13_07975 PF01546 Peptidase family M20/M25/M40 EP13_07975 PF07687 Peptidase dimerisation domain EP13_07980 PF00266 Aminotransferase class-V EP13_07985 PF01925 Sulfite exporter TauE/SafE EP13_07995 PF01425 Amidase EP13_08035 PF03129 Anticodon binding domain EP13_08035 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EP13_08035 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP13_08035 PF02824 TGS domain EP13_08040 PF05198 Translation initiation factor IF-3, N-terminal domain EP13_08040 PF00707 Translation initiation factor IF-3, C-terminal domain EP13_08045 PF01632 Ribosomal protein L35 EP13_08050 PF00453 Ribosomal protein L20 EP13_08055 PF02397 Bacterial sugar transferase EP13_08065 PF02563 Polysaccharide biosynthesis/export protein EP13_08065 PF10531 SLBB domain EP13_08065 PF18412 Outer-membrane lipoprotein Wza C-terminal domain EP13_08070 PF13614 AAA domain EP13_08085 PF13439 Glycosyltransferase Family 4 EP13_08085 PF00534 Glycosyl transferases group 1 EP13_08100 PF00563 EAL domain EP13_08100 PF03707 Bacterial signalling protein N terminal repeat EP13_08100 PF13188 PAS domain EP13_08100 PF00990 Diguanylate cyclase, GGDEF domain EP13_08110 PF13439 Glycosyltransferase Family 4 EP13_08110 PF00534 Glycosyl transferases group 1 EP13_08115 PF00535 Glycosyl transferase family 2 EP13_08115 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 EP13_08120 PF04932 O-Antigen ligase EP13_08125 PF01757 Acyltransferase family EP13_08130 PF00534 Glycosyl transferases group 1 EP13_08140 PF13439 Glycosyltransferase Family 4 EP13_08140 PF00534 Glycosyl transferases group 1 EP13_08150 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EP13_08155 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EP13_08155 PF01565 FAD binding domain EP13_08175 PF01409 tRNA synthetases class II core domain (F) EP13_08175 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EP13_08180 PF01588 Putative tRNA binding domain EP13_08180 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EP13_08180 PF03483 B3/4 domain EP13_08180 PF03484 tRNA synthetase B5 domain EP13_08180 PF03147 Ferredoxin-fold anticodon binding domain EP13_08185 PF00216 Bacterial DNA-binding protein EP13_08195 PF04073 Aminoacyl-tRNA editing domain EP13_08205 PF00933 Glycosyl hydrolase family 3 N terminal domain EP13_08210 PF01923 Cobalamin adenosyltransferase EP13_08220 PF00270 DEAD/DEAH box helicase EP13_08220 PF03461 TRCF domain EP13_08220 PF00271 Helicase conserved C-terminal domain EP13_08220 PF02559 CarD-like/TRCF domain EP13_08220 PF17757 UvrB interaction domain EP13_08230 PF12704 MacB-like periplasmic core domain EP13_08230 PF02687 FtsX-like permease family EP13_08235 PF00156 Phosphoribosyl transferase domain EP13_08245 PF03372 Endonuclease/Exonuclease/phosphatase family EP13_08280 PF07690 Major Facilitator Superfamily EP13_08290 PF00483 Nucleotidyl transferase EP13_08305 PF00682 HMGL-like EP13_08310 PF02785 Biotin carboxylase C-terminal domain EP13_08310 PF00289 Biotin carboxylase, N-terminal domain EP13_08310 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP13_08320 PF01039 Carboxyl transferase domain EP13_08325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP13_08325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP13_08325 PF02770 Acyl-CoA dehydrogenase, middle domain EP13_08330 PF13411 MerR HTH family regulatory protein EP13_08335 PF00108 Thiolase, N-terminal domain EP13_08335 PF02803 Thiolase, C-terminal domain EP13_08350 PF08411 Exonuclease C-terminal EP13_08350 PF00929 Exonuclease EP13_08365 PF16656 Purple acid Phosphatase, N-terminal domain EP13_08365 PF00149 Calcineurin-like phosphoesterase EP13_08390 PF11898 Domain of unknown function (DUF3418) EP13_08390 PF04408 Helicase associated domain (HA2) EP13_08390 PF00271 Helicase conserved C-terminal domain EP13_08390 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold EP13_08390 PF00270 DEAD/DEAH box helicase EP13_08405 PF17785 PUA-like domain EP13_08405 PF10672 S-adenosylmethionine-dependent methyltransferase EP13_08410 PF08659 KR domain EP13_08410 PF02801 Beta-ketoacyl synthase, C-terminal domain EP13_08410 PF00109 Beta-ketoacyl synthase, N-terminal domain EP13_08410 PF16197 Ketoacyl-synthetase C-terminal extension EP13_08410 PF08240 Alcohol dehydrogenase GroES-like domain EP13_08410 PF00698 Acyl transferase domain EP13_08410 PF14765 Polyketide synthase dehydratase EP13_08410 PF00550 Phosphopantetheine attachment site EP13_08415 PF00075 RNase H EP13_08420 PF00929 Exonuclease EP13_08450 PF00563 EAL domain EP13_08450 PF12792 CSS motif domain associated with EAL EP13_08455 PF00005 ABC transporter EP13_08460 PF12704 MacB-like periplasmic core domain EP13_08460 PF02687 FtsX-like permease family EP13_08465 PF00375 Sodium:dicarboxylate symporter family EP13_08475 PF04996 Succinylarginine dihydrolase EP13_08480 PF01396 Topoisomerase DNA binding C4 zinc finger EP13_08480 PF01751 Toprim domain EP13_08480 PF01131 DNA topoisomerase EP13_08480 PF08272 Topoisomerase I zinc-ribbon-like EP13_08485 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) EP13_08490 PF00962 Adenosine/AMP deaminase EP13_08495 PF13673 Acetyltransferase (GNAT) domain EP13_08500 PF13419 Haloacid dehalogenase-like hydrolase EP13_08510 PF12111 Polyribonucleotide phosphorylase C terminal EP13_08510 PF10150 Ribonuclease E/G family EP13_08510 PF00575 S1 RNA binding domain EP13_08515 PF01479 S4 domain EP13_08515 PF00849 RNA pseudouridylate synthase EP13_08525 PF02545 Maf-like protein EP13_08530 PF02620 Large ribosomal RNA subunit accumulation protein YceD EP13_08535 PF01783 Ribosomal L32p protein family EP13_08540 PF02504 Fatty acid synthesis protein EP13_08545 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EP13_08545 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EP13_08550 PF00698 Acyl transferase domain EP13_08560 PF00550 Phosphopantetheine attachment site EP13_08565 PF00109 Beta-ketoacyl synthase, N-terminal domain EP13_08565 PF02801 Beta-ketoacyl synthase, C-terminal domain EP13_08575 PF00561 alpha/beta hydrolase fold EP13_08580 PF00378 Enoyl-CoA hydratase/isomerase EP13_08580 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP13_08580 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP13_08585 PF00108 Thiolase, N-terminal domain EP13_08585 PF02803 Thiolase, C-terminal domain EP13_08590 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP13_08590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP13_08590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP13_08590 PF02770 Acyl-CoA dehydrogenase, middle domain EP13_08600 PF04198 Putative sugar-binding domain EP13_08605 PF13419 Haloacid dehalogenase-like hydrolase EP13_08615 PF01232 Mannitol dehydrogenase Rossmann domain EP13_08615 PF08125 Mannitol dehydrogenase C-terminal domain EP13_08625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_08625 PF03466 LysR substrate binding domain EP13_08640 PF00924 Mechanosensitive ion channel EP13_08645 PF00593 TonB dependent receptor EP13_08645 PF07715 TonB-dependent Receptor Plug Domain EP13_08650 PF01329 Pterin 4 alpha carbinolamine dehydratase EP13_08670 PF00072 Response regulator receiver domain EP13_08670 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP13_08670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_08670 PF00989 PAS fold EP13_08670 PF01627 Hpt domain EP13_08670 PF00512 His Kinase A (phospho-acceptor) domain EP13_08675 PF00072 Response regulator receiver domain EP13_08680 PF17384 RimP C-terminal SH3 domain EP13_08680 PF02576 RimP N-terminal domain EP13_08685 PF00575 S1 RNA binding domain EP13_08685 PF08529 NusA N-terminal domain EP13_08685 PF13184 NusA-like KH domain EP13_08690 PF11987 Translation-initiation factor 2 EP13_08690 PF04760 Translation initiation factor IF-2, N-terminal region EP13_08690 PF00009 Elongation factor Tu GTP binding domain EP13_08690 PF08364 Bacterial translation initiation factor IF-2 associated region EP13_08695 PF02033 Ribosome-binding factor A EP13_08700 PF16198 tRNA pseudouridylate synthase B C-terminal domain EP13_08700 PF01509 TruB family pseudouridylate synthase (N terminal domain) EP13_08700 PF09157 Pseudouridine synthase II TruB, C-terminal EP13_08705 PF00312 Ribosomal protein S15 EP13_08725 PF00795 Carbon-nitrogen hydrolase EP13_08725 PF00583 Acetyltransferase (GNAT) family EP13_08755 PF00578 AhpC/TSA family EP13_08755 PF10417 C-terminal domain of 1-Cys peroxiredoxin EP13_08760 PF13192 Thioredoxin domain EP13_08760 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP13_08765 PF07715 TonB-dependent Receptor Plug Domain EP13_08765 PF00593 TonB dependent receptor EP13_08810 PF00593 TonB dependent receptor EP13_08810 PF07715 TonB-dependent Receptor Plug Domain EP13_08815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP13_08815 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP13_08825 PF13416 Bacterial extracellular solute-binding protein EP13_08835 PF00005 ABC transporter EP13_08840 PF01066 CDP-alcohol phosphatidyltransferase EP13_08850 PF06055 Exopolysaccharide synthesis, ExoD EP13_08890 PF00593 TonB dependent receptor EP13_08890 PF07715 TonB-dependent Receptor Plug Domain EP13_08905 PF00005 ABC transporter EP13_08930 PF01668 SmpB protein EP13_08935 PF03364 Polyketide cyclase / dehydrase and lipid transport EP13_08940 PF03658 RnfH family Ubiquitin EP13_08950 PF02028 BCCT, betaine/carnitine/choline family transporter EP13_08955 PF07715 TonB-dependent Receptor Plug Domain EP13_08955 PF00593 TonB dependent receptor EP13_08960 PF13181 Tetratricopeptide repeat EP13_08965 PF03618 Kinase/pyrophosphorylase EP13_08970 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EP13_08970 PF02896 PEP-utilising enzyme, TIM barrel domain EP13_08970 PF00391 PEP-utilising enzyme, mobile domain EP13_08975 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EP13_08980 PF00111 2Fe-2S iron-sulfur cluster binding domain EP13_08980 PF01799 [2Fe-2S] binding domain EP13_08990 PF01565 FAD binding domain EP13_08990 PF02913 FAD linked oxidases, C-terminal domain EP13_08990 PF13183 4Fe-4S dicluster domain EP13_09000 PF08007 Cupin superfamily protein EP13_09010 PF08328 Adenylosuccinate lyase C-terminal EP13_09010 PF00206 Lyase EP13_09015 PF04356 Protein of unknown function (DUF489) EP13_09025 PF00849 RNA pseudouridylate synthase EP13_09030 PF03971 Monomeric isocitrate dehydrogenase EP13_09035 PF00313 'Cold-shock' DNA-binding domain EP13_09040 PF02617 ATP-dependent Clp protease adaptor protein ClpS EP13_09045 PF07724 AAA domain (Cdc48 subfamily) EP13_09045 PF10431 C-terminal, D2-small domain, of ClpB protein EP13_09045 PF17871 AAA lid domain EP13_09045 PF02861 Clp amino terminal domain, pathogenicity island component EP13_09045 PF00004 ATPase family associated with various cellular activities (AAA) EP13_09050 PF01176 Translation initiation factor 1A / IF-1 EP13_09055 PF04377 Arginine-tRNA-protein transferase, C terminus EP13_09055 PF04376 Arginine-tRNA-protein transferase, N terminus EP13_09060 PF03588 Leucyl/phenylalanyl-tRNA protein transferase EP13_09065 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP13_09070 PF04217 Protein of unknown function, DUF412 EP13_09075 PF10263 SprT-like family EP13_09080 PF01343 Peptidase family S49 EP13_09090 PF00881 Nitroreductase family EP13_09100 PF00710 Asparaginase, N-terminal EP13_09100 PF17763 Glutaminase/Asparaginase C-terminal domain EP13_09105 PF17158 Membrane-associated sensor, integral membrane domain EP13_09105 PF00990 Diguanylate cyclase, GGDEF domain EP13_09110 PF04055 Radical SAM superfamily EP13_09110 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family EP13_09115 PF03099 Biotin/lipoate A/B protein ligase family EP13_09120 PF04359 Protein of unknown function (DUF493) EP13_09125 PF00768 D-alanyl-D-alanine carboxypeptidase EP13_09125 PF07943 Penicillin-binding protein 5, C-terminal domain EP13_09130 PF03330 Lytic transglycolase EP13_09130 PF05036 Sporulation related domain EP13_09135 PF01098 Cell cycle protein EP13_09140 PF00905 Penicillin binding protein transpeptidase domain EP13_09140 PF03717 Penicillin-binding Protein dimerisation domain EP13_09145 PF02590 Predicted SPOUT methyltransferase EP13_09155 PF01467 Cytidylyltransferase-like EP13_09160 PF06144 DNA polymerase III, delta subunit EP13_09160 PF14840 Processivity clamp loader gamma complex DNA pol III C-term EP13_09165 PF04390 Lipopolysaccharide-assembly EP13_09170 PF00133 tRNA synthetases class I (I, L, M and V) EP13_09170 PF13603 Leucyl-tRNA synthetase, Domain 2 EP13_09170 PF08264 Anticodon-binding domain of tRNA EP13_09175 PF13654 AAA domain EP13_09175 PF05362 Lon protease (S16) C-terminal proteolytic domain EP13_09180 PF00106 short chain dehydrogenase EP13_09185 PF01985 CRS1 / YhbY (CRM) domain EP13_09190 PF01728 FtsJ-like methyltransferase EP13_09195 PF01434 Peptidase family M41 EP13_09195 PF00004 ATPase family associated with various cellular activities (AAA) EP13_09195 PF06480 FtsH Extracellular EP13_09195 PF17862 AAA+ lid domain EP13_09200 PF00809 Pterin binding enzyme EP13_09205 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP13_09205 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP13_09205 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP13_09205 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP13_09210 PF00121 Triosephosphate isomerase EP13_09215 PF03840 Preprotein translocase SecG subunit EP13_09225 PF00563 EAL domain EP13_09225 PF03707 Bacterial signalling protein N terminal repeat EP13_09225 PF00990 Diguanylate cyclase, GGDEF domain EP13_09240 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EP13_09240 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EP13_09245 PF00781 Diacylglycerol kinase catalytic domain EP13_09255 PF00106 short chain dehydrogenase EP13_09270 PF00474 Sodium:solute symporter family EP13_09300 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EP13_09300 PF01138 3' exoribonuclease family, domain 1 EP13_09300 PF03725 3' exoribonuclease family, domain 2 EP13_09300 PF00013 KH domain EP13_09300 PF00575 S1 RNA binding domain EP13_09325 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EP13_09325 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region EP13_09330 PF07719 Tetratricopeptide repeat EP13_09330 PF13181 Tetratricopeptide repeat EP13_09345 PF06470 SMC proteins Flexible Hinge Domain EP13_09345 PF02463 RecF/RecN/SMC N terminal domain EP13_09350 PF04354 ZipA, C-terminal FtsZ-binding domain EP13_09355 PF03120 NAD-dependent DNA ligase OB-fold domain EP13_09355 PF01653 NAD-dependent DNA ligase adenylation domain EP13_09355 PF00533 BRCA1 C Terminus (BRCT) domain EP13_09355 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EP13_09355 PF12826 Helix-hairpin-helix motif EP13_09370 PF00664 ABC transporter transmembrane region EP13_09370 PF00005 ABC transporter EP13_09380 PF03966 Trm112p-like protein EP13_09385 PF02348 Cytidylyltransferase EP13_09390 PF00106 short chain dehydrogenase EP13_09395 PF00919 Uncharacterized protein family UPF0004 EP13_09395 PF04055 Radical SAM superfamily EP13_09395 PF18693 TRAM domain EP13_09520 PF00899 ThiF family EP13_09525 PF13409 Glutathione S-transferase, N-terminal domain EP13_09530 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP13_09530 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP13_09530 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP13_09530 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP13_09540 PF00285 Citrate synthase, C-terminal domain EP13_09545 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EP13_09550 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EP13_09555 PF00890 FAD binding domain EP13_09555 PF02910 Fumarate reductase flavoprotein C-term EP13_09560 PF13085 2Fe-2S iron-sulfur cluster binding domain EP13_09565 PF02779 Transketolase, pyrimidine binding domain EP13_09565 PF16870 2-oxoglutarate dehydrogenase C-terminal EP13_09565 PF16078 2-oxoglutarate dehydrogenase N-terminus EP13_09565 PF00676 Dehydrogenase E1 component EP13_09570 PF02817 e3 binding domain EP13_09570 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP13_09570 PF00364 Biotin-requiring enzyme EP13_09575 PF00549 CoA-ligase EP13_09575 PF08442 ATP-grasp domain EP13_09580 PF02629 CoA binding domain EP13_09580 PF00549 CoA-ligase EP13_09590 PF04820 Tryptophan halogenase EP13_09605 PF18494 Pullulanase Ins domain EP13_09605 PF11852 Domain of unknown function (DUF3372) EP13_09605 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EP13_09605 PF17967 Pullulanase N2 domain EP13_09605 PF03714 Bacterial pullanase-associated domain EP13_09610 PF01734 Patatin-like phospholipase EP13_09620 PF02903 Alpha amylase, N-terminal ig-like domain EP13_09620 PF00128 Alpha amylase, catalytic domain EP13_09620 PF16657 Maltogenic Amylase, C-terminal domain EP13_09625 PF10438 Cyclo-malto-dextrinase C-terminal domain EP13_09625 PF00128 Alpha amylase, catalytic domain EP13_09625 PF09087 Cyclomaltodextrinase, N-terminal EP13_09635 PF00686 Starch binding domain EP13_09635 PF00128 Alpha amylase, catalytic domain EP13_09640 PF00356 Bacterial regulatory proteins, lacI family EP13_09645 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain EP13_09645 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP13_09650 PF00106 short chain dehydrogenase EP13_09655 PF12262 Bacterial virulence factor lipase N-terminal EP13_09660 PF01804 Penicillin amidase EP13_09665 PF08496 Peptidase family S49 N-terminal EP13_09665 PF01343 Peptidase family S49 EP13_09675 PF01784 NIF3 (NGG1p interacting factor 3) EP13_09690 PF00255 Glutathione peroxidase EP13_09695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP13_09695 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP13_09710 PF00171 Aldehyde dehydrogenase family EP13_09715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP13_09715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP13_09715 PF02770 Acyl-CoA dehydrogenase, middle domain EP13_09720 PF00378 Enoyl-CoA hydratase/isomerase EP13_09725 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP13_09725 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP13_09730 PF13847 Methyltransferase domain EP13_09740 PF11893 Domain of unknown function (DUF3413) EP13_09740 PF00884 Sulfatase EP13_09745 PF07208 Protein of unknown function (DUF1414) EP13_09750 PF04245 37-kD nucleoid-associated bacterial protein EP13_09780 PF06580 Histidine kinase EP13_09780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_09780 PF07694 5TMR of 5TMR-LYT EP13_09785 PF00072 Response regulator receiver domain EP13_09785 PF04397 LytTr DNA-binding domain EP13_09790 PF00365 Phosphofructokinase EP13_09815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_09815 PF00512 His Kinase A (phospho-acceptor) domain EP13_09815 PF01627 Hpt domain EP13_09815 PF00072 Response regulator receiver domain EP13_09815 PF00989 PAS fold EP13_09815 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP13_09835 PF01479 S4 domain EP13_09835 PF00849 RNA pseudouridylate synthase EP13_09845 PF00990 Diguanylate cyclase, GGDEF domain EP13_09845 PF03707 Bacterial signalling protein N terminal repeat EP13_09845 PF00563 EAL domain EP13_09850 PF00271 Helicase conserved C-terminal domain EP13_09850 PF00270 DEAD/DEAH box helicase EP13_09855 PF01144 Coenzyme A transferase EP13_09860 PF01144 Coenzyme A transferase EP13_09865 PF03466 LysR substrate binding domain EP13_09865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_09890 PF03466 LysR substrate binding domain EP13_09890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_09895 PF03313 Serine dehydratase alpha chain EP13_09895 PF03315 Serine dehydratase beta chain EP13_09900 PF00293 NUDIX domain EP13_09905 PF00425 chorismate binding enzyme EP13_09905 PF04715 Anthranilate synthase component I, N terminal region EP13_09915 PF02646 RmuC family EP13_09920 PF00990 Diguanylate cyclase, GGDEF domain EP13_09930 PF00082 Subtilase family EP13_09930 PF02225 PA domain EP13_09930 PF05922 Peptidase inhibitor I9 EP13_09930 PF13860 FlgD Ig-like domain EP13_09935 PF00676 Dehydrogenase E1 component EP13_09940 PF02780 Transketolase, C-terminal domain EP13_09940 PF02779 Transketolase, pyrimidine binding domain EP13_09945 PF02817 e3 binding domain EP13_09945 PF00364 Biotin-requiring enzyme EP13_09945 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP13_09950 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ EP13_09955 PF00069 Protein kinase domain EP13_09965 PF00132 Bacterial transferase hexapeptide (six repeats) EP13_09970 PF00266 Aminotransferase class-V EP13_09980 PF13185 GAF domain EP13_09990 PF04352 ProQ/FINO family EP13_09990 PF17516 ProQ C-terminal domain EP13_09995 PF17804 Tail specific protease N-terminal domain EP13_09995 PF03572 Peptidase family S41 EP13_09995 PF00595 PDZ domain EP13_09995 PF11818 C-terminal domain of tail specific protease (DUF3340) EP13_10000 PF00209 Sodium:neurotransmitter symporter family EP13_10010 PF11940 Domain of unknown function (DUF3458) Ig-like fold EP13_10010 PF01433 Peptidase family M1 domain EP13_10010 PF17432 Domain of unknown function (DUF3458_C) ARM repeats EP13_10025 PF07044 Protein of unknown function (DUF1329) EP13_10040 PF05088 Bacterial NAD-glutamate dehydrogenase EP13_10045 PF01180 Dihydroorotate dehydrogenase EP13_10050 PF02926 THUMP domain EP13_10050 PF10672 S-adenosylmethionine-dependent methyltransferase EP13_10050 PF01170 Putative RNA methylase family UPF0020 EP13_10070 PF04957 Ribosome modulation factor EP13_10075 PF07977 FabA-like domain EP13_10085 PF03441 FAD binding domain of DNA photolyase EP13_10085 PF00875 DNA photolyase EP13_10095 PF00875 DNA photolyase EP13_10095 PF03441 FAD binding domain of DNA photolyase EP13_10100 PF04244 Deoxyribodipyrimidine photo-lyase-related protein EP13_10120 PF01219 Prokaryotic diacylglycerol kinase EP13_10125 PF00582 Universal stress protein family EP13_10135 PF01645 Conserved region in glutamate synthase EP13_10140 PF00999 Sodium/hydrogen exchanger family EP13_10145 PF00210 Ferritin-like domain EP13_10150 PF00210 Ferritin-like domain EP13_10160 PF00115 Cytochrome C and Quinol oxidase polypeptide I EP13_10175 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EP13_10175 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP EP13_10185 PF00403 Heavy-metal-associated domain EP13_10200 PF13545 Crp-like helix-turn-helix domain EP13_10200 PF00027 Cyclic nucleotide-binding domain EP13_10205 PF00582 Universal stress protein family EP13_10210 PF01171 PP-loop family EP13_10215 PF01734 Patatin-like phospholipase EP13_10235 PF01810 LysE type translocator EP13_10240 PF02146 Sir2 family EP13_10245 PF00581 Rhodanese-like domain EP13_10250 PF08534 Redoxin EP13_10335 PF00589 Phage integrase family EP13_10335 PF13356 Arm DNA-binding domain EP13_10355 PF01066 CDP-alcohol phosphatidyltransferase EP13_10360 PF08459 UvrC Helix-hairpin-helix N-terminal EP13_10360 PF02151 UvrB/uvrC motif EP13_10360 PF01541 GIY-YIG catalytic domain EP13_10365 PF00196 Bacterial regulatory proteins, luxR family EP13_10365 PF00072 Response regulator receiver domain EP13_10370 PF17954 Quercetinase C-terminal cupin domain EP13_10370 PF02678 Pirin EP13_10380 PF12867 DinB superfamily EP13_10380 PF03781 Sulfatase-modifying factor enzyme 1 EP13_10390 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase EP13_10395 PF07681 DoxX EP13_10400 PF03466 LysR substrate binding domain EP13_10400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_10415 PF01027 Inhibitor of apoptosis-promoting Bax1 EP13_10420 PF02635 DsrE/DsrF-like family EP13_10435 PF04358 DsrC like protein EP13_10445 PF03783 Curli production assembly/transport component CsgG EP13_10455 PF05643 Putative bacterial lipoprotein (DUF799) EP13_10460 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP13_10460 PF02403 Seryl-tRNA synthetase N-terminal domain EP13_10465 PF02537 CrcB-like protein, Camphor Resistance (CrcB) EP13_10470 PF00004 ATPase family associated with various cellular activities (AAA) EP13_10470 PF12002 MgsA AAA+ ATPase C terminal EP13_10470 PF16193 AAA C-terminal domain EP13_10475 PF03548 Outer membrane lipoprotein carrier protein LolA EP13_10480 PF01580 FtsK/SpoIIIE family EP13_10480 PF09397 Ftsk gamma domain EP13_10480 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EP13_10480 PF17854 FtsK alpha domain EP13_10485 PF01037 Lrp/AsnC ligand binding domain EP13_10490 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EP13_10490 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EP13_10495 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EP13_10500 PF18073 Rubredoxin metal binding domain EP13_10515 PF00216 Bacterial DNA-binding protein EP13_10520 PF00575 S1 RNA binding domain EP13_10525 PF02224 Cytidylate kinase EP13_10530 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EP13_10535 PF00266 Aminotransferase class-V EP13_10540 PF03989 DNA gyrase C-terminal domain, beta-propeller EP13_10540 PF00521 DNA gyrase/topoisomerase IV, subunit A EP13_10550 PF02867 Ribonucleotide reductase, barrel domain EP13_10550 PF00317 Ribonucleotide reductase, all-alpha domain EP13_10550 PF03477 ATP cone domain EP13_10555 PF00268 Ribonucleotide reductase, small chain EP13_10560 PF00111 2Fe-2S iron-sulfur cluster binding domain EP13_10585 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP13_10585 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP13_10590 PF00892 EamA-like transporter family EP13_10595 PF01259 SAICAR synthetase EP13_10600 PF06804 NlpB/DapX lipoprotein EP13_10605 PF00701 Dihydrodipicolinate synthetase family EP13_10615 PF00578 AhpC/TSA family EP13_10620 PF01594 AI-2E family transporter EP13_10625 PF13181 Tetratricopeptide repeat EP13_10625 PF01435 Peptidase family M48 EP13_10630 PF11412 Disulphide bond corrector protein DsbC EP13_10630 PF02683 Cytochrome C biogenesis protein transmembrane region EP13_10635 PF03960 ArsC family EP13_10640 PF03358 NADPH-dependent FMN reductase EP13_10665 PF00557 Metallopeptidase family M24 EP13_10670 PF01965 DJ-1/PfpI family EP13_10685 PF00308 Bacterial dnaA protein EP13_10695 PF02769 AIR synthase related protein, C-terminal domain EP13_10695 PF00586 AIR synthase related protein, N-terminal domain EP13_10700 PF00551 Formyl transferase EP13_10710 PF02770 Acyl-CoA dehydrogenase, middle domain EP13_10710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP13_10710 PF09317 Domain of unknown function (DUF1974) EP13_10710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP13_10715 PF00072 Response regulator receiver domain EP13_10715 PF00196 Bacterial regulatory proteins, luxR family EP13_10720 PF13649 Methyltransferase domain EP13_10725 PF08003 Protein of unknown function (DUF1698) EP13_10745 PF00128 Alpha amylase, catalytic domain EP13_10750 PF13419 Haloacid dehalogenase-like hydrolase EP13_10755 PF03453 MoeA N-terminal region (domain I and II) EP13_10755 PF03454 MoeA C-terminal region (domain IV) EP13_10755 PF00994 Probable molybdopterin binding domain EP13_10760 PF01554 MatE EP13_10775 PF01434 Peptidase family M41 EP13_10775 PF00004 ATPase family associated with various cellular activities (AAA) EP13_10775 PF17862 AAA+ lid domain EP13_10780 PF00291 Pyridoxal-phosphate dependent enzyme EP13_10795 PF00378 Enoyl-CoA hydratase/isomerase EP13_10810 PF00255 Glutathione peroxidase EP13_10815 PF02525 Flavodoxin-like fold EP13_10820 PF01053 Cys/Met metabolism PLP-dependent enzyme EP13_10835 PF00155 Aminotransferase class I and II EP13_10845 PF08267 Cobalamin-independent synthase, N-terminal domain EP13_10845 PF01717 Cobalamin-independent synthase, Catalytic domain EP13_10855 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EP13_10870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP13_10870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP13_10870 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP13_10870 PF02770 Acyl-CoA dehydrogenase, middle domain EP13_10875 PF12833 Helix-turn-helix domain EP13_10875 PF02311 AraC-like ligand binding domain EP13_10880 PF00593 TonB dependent receptor EP13_10880 PF07715 TonB-dependent Receptor Plug Domain EP13_10895 PF00873 AcrB/AcrD/AcrF family EP13_10900 PF13533 Biotin-lipoyl like EP13_10910 PF01012 Electron transfer flavoprotein domain EP13_10910 PF00766 Electron transfer flavoprotein FAD-binding domain EP13_10915 PF01012 Electron transfer flavoprotein domain EP13_10935 PF12697 Alpha/beta hydrolase family EP13_10945 PF00258 Flavodoxin EP13_10955 PF01475 Ferric uptake regulator family EP13_10960 PF01063 Amino-transferase class IV EP13_10965 PF02626 Carboxyltransferase domain, subdomain A and B EP13_10975 PF03746 LamB/YcsF family EP13_10980 PF13509 S1 domain EP13_10980 PF17783 CvfB-like winged helix domain EP13_11000 PF00155 Aminotransferase class I and II EP13_11010 PF13286 Phosphohydrolase-associated domain EP13_11010 PF01966 HD domain EP13_11015 PF00196 Bacterial regulatory proteins, luxR family EP13_11020 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EP13_11025 PF07715 TonB-dependent Receptor Plug Domain EP13_11025 PF00593 TonB dependent receptor EP13_11030 PF00174 Oxidoreductase molybdopterin binding domain EP13_11040 PF09335 SNARE associated Golgi protein EP13_11050 PF02810 SEC-C motif EP13_11065 PF00583 Acetyltransferase (GNAT) family EP13_11070 PF00990 Diguanylate cyclase, GGDEF domain EP13_11075 PF13460 NAD(P)H-binding EP13_11085 PF01026 TatD related DNase EP13_11090 PF09115 DNA polymerase III, delta subunit, C terminal EP13_11095 PF02223 Thymidylate kinase EP13_11100 PF02618 YceG-like family EP13_11115 PF08240 Alcohol dehydrogenase GroES-like domain EP13_11115 PF00107 Zinc-binding dehydrogenase EP13_11125 PF02770 Acyl-CoA dehydrogenase, middle domain EP13_11125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP13_11125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP13_11135 PF07715 TonB-dependent Receptor Plug Domain EP13_11135 PF00593 TonB dependent receptor EP13_11150 PF04055 Radical SAM superfamily EP13_11150 PF06969 HemN C-terminal domain EP13_11160 PF00528 Binding-protein-dependent transport system inner membrane component EP13_11170 PF02391 MoaE protein EP13_11175 PF02597 ThiS family EP13_11180 PF01967 MoaC family EP13_11185 PF00994 Probable molybdopterin binding domain EP13_11190 PF00899 ThiF family EP13_11210 PF00155 Aminotransferase class I and II EP13_11215 PF03435 Saccharopine dehydrogenase NADP binding domain EP13_11220 PF00155 Aminotransferase class I and II EP13_11245 PF13538 UvrD-like helicase C-terminal domain EP13_11255 PF17946 RecC C-terminal domain EP13_11270 PF00501 AMP-binding enzyme EP13_11275 PF03707 Bacterial signalling protein N terminal repeat EP13_11275 PF00563 EAL domain EP13_11275 PF00990 Diguanylate cyclase, GGDEF domain EP13_11280 PF17770 Ribonuclease J C-terminal domain EP13_11280 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain EP13_11280 PF12706 Beta-lactamase superfamily domain EP13_11285 PF04337 Protein of unknown function, DUF480 EP13_11300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_11300 PF03466 LysR substrate binding domain EP13_11315 PF04219 Protein of unknown function, DUF EP13_11325 PF01022 Bacterial regulatory protein, arsR family EP13_11345 PF02954 Bacterial regulatory protein, Fis family EP13_11345 PF00158 Sigma-54 interaction domain EP13_11345 PF00072 Response regulator receiver domain EP13_11355 PF00512 His Kinase A (phospho-acceptor) domain EP13_11355 PF01590 GAF domain EP13_11355 PF00360 Phytochrome region EP13_11355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_11355 PF08446 PAS fold EP13_11360 PF00072 Response regulator receiver domain EP13_11390 PF07043 Protein of unknown function (DUF1328) EP13_11410 PF07023 Protein of unknown function (DUF1315) EP13_11420 PF01235 Sodium:alanine symporter family EP13_11425 PF18027 Cytosolic carboxypeptidase N-terminal domain EP13_11425 PF00246 Zinc carboxypeptidase EP13_11435 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EP13_11435 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP13_11445 PF01641 SelR domain EP13_11450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP13_11450 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain EP13_11455 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EP13_11455 PF00128 Alpha amylase, catalytic domain EP13_11460 PF00128 Alpha amylase, catalytic domain EP13_11460 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EP13_11460 PF02806 Alpha amylase, C-terminal all-beta domain EP13_11465 PF02446 4-alpha-glucanotransferase EP13_11470 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP13_11470 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EP13_11475 PF01263 Aldose 1-epimerase EP13_11485 PF01081 KDPG and KHG aldolase EP13_11490 PF02685 Glucokinase EP13_11495 PF00920 Dehydratase family EP13_11500 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EP13_11505 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain EP13_11505 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain EP13_11510 PF01380 SIS domain EP13_11510 PF01418 Helix-turn-helix domain, rpiR family EP13_11515 PF00224 Pyruvate kinase, barrel domain EP13_11515 PF02887 Pyruvate kinase, alpha/beta domain EP13_11520 PF01048 Phosphorylase superfamily EP13_11565 PF00512 His Kinase A (phospho-acceptor) domain EP13_11565 PF00672 HAMP domain EP13_11565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_11570 PF00072 Response regulator receiver domain EP13_11570 PF00486 Transcriptional regulatory protein, C terminal EP13_11595 PF09347 Domain of unknown function (DUF1989) EP13_11610 PF04962 KduI/IolB family EP13_11615 PF03480 Bacterial extracellular solute-binding protein, family 7 EP13_11625 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EP13_11630 PF00356 Bacterial regulatory proteins, lacI family EP13_11635 PF08666 SAF domain EP13_11635 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus EP13_11640 PF02614 Glucuronate isomerase EP13_11645 PF01232 Mannitol dehydrogenase Rossmann domain EP13_11645 PF08125 Mannitol dehydrogenase C-terminal domain EP13_11650 PF00294 pfkB family carbohydrate kinase EP13_11655 PF13472 GDSL-like Lipase/Acylhydrolase family EP13_11665 PF07470 Glycosyl Hydrolase Family 88 EP13_11670 PF00295 Glycosyl hydrolases family 28 EP13_11675 PF01095 Pectinesterase EP13_11680 PF01627 Hpt domain EP13_11680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_11680 PF00072 Response regulator receiver domain EP13_11680 PF00672 HAMP domain EP13_11680 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP13_11680 PF00512 His Kinase A (phospho-acceptor) domain EP13_11690 PF01433 Peptidase family M1 domain EP13_11690 PF11838 ERAP1-like C-terminal domain EP13_11695 PF00873 AcrB/AcrD/AcrF family EP13_11705 PF00005 ABC transporter EP13_11720 PF00356 Bacterial regulatory proteins, lacI family EP13_11725 PF13378 Enolase C-terminal domain-like EP13_11725 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EP13_11730 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EP13_11730 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EP13_11745 PF00563 EAL domain EP13_11745 PF00990 Diguanylate cyclase, GGDEF domain EP13_11745 PF03707 Bacterial signalling protein N terminal repeat EP13_11765 PF00486 Transcriptional regulatory protein, C terminal EP13_11765 PF00072 Response regulator receiver domain EP13_11770 PF00672 HAMP domain EP13_11770 PF00512 His Kinase A (phospho-acceptor) domain EP13_11770 PF16527 Two-component sensor protein CpxA, periplasmic domain EP13_11770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_11780 PF11849 Domain of unknown function (DUF3369) EP13_11785 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP13_11785 PF00512 His Kinase A (phospho-acceptor) domain EP13_11785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_11825 PF01145 SPFH domain / Band 7 family EP13_11845 PF00939 Sodium:sulfate symporter transmembrane region EP13_11850 PF00692 dUTPase EP13_11855 PF10609 NUBPL iron-transfer P-loop NTPase EP13_11860 PF09334 tRNA synthetases class I (M) EP13_11860 PF08264 Anticodon-binding domain of tRNA EP13_11860 PF01588 Putative tRNA binding domain EP13_11865 PF08241 Methyltransferase domain EP13_11870 PF00753 Metallo-beta-lactamase superfamily EP13_11870 PF16123 Hydroxyacylglutathione hydrolase C-terminus EP13_11875 PF01464 Transglycosylase SLT domain EP13_11875 PF01476 LysM domain EP13_11890 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EP13_11895 PF00149 Calcineurin-like phosphoesterase EP13_11900 PF00245 Alkaline phosphatase EP13_11905 PF00245 Alkaline phosphatase EP13_11920 PF15975 Flotillin EP13_11920 PF01145 SPFH domain / Band 7 family EP13_11925 PF08240 Alcohol dehydrogenase GroES-like domain EP13_11925 PF00107 Zinc-binding dehydrogenase EP13_11930 PF03466 LysR substrate binding domain EP13_11930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_11935 PF04336 Acyl carrier protein phosphodiesterase EP13_11940 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) EP13_11950 PF00156 Phosphoribosyl transferase domain EP13_11955 PF02674 Colicin V production protein EP13_11960 PF05036 Sporulation related domain EP13_11965 PF02875 Mur ligase family, glutamate ligase domain EP13_11965 PF08245 Mur ligase middle domain EP13_11970 PF17848 Acetyl-coA carboxylase zinc finger domain EP13_11970 PF01039 Carboxyl transferase domain EP13_11975 PF01416 tRNA pseudouridine synthase EP13_11985 PF02774 Semialdehyde dehydrogenase, dimerisation domain EP13_11985 PF01118 Semialdehyde dehydrogenase, NAD binding domain EP13_11990 PF11890 Domain of unknown function (DUF3410) EP13_11990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP13_11990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP13_12000 PF00109 Beta-ketoacyl synthase, N-terminal domain EP13_12000 PF02801 Beta-ketoacyl synthase, C-terminal domain EP13_12005 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EP13_12005 PF01266 FAD dependent oxidoreductase EP13_12030 PF00924 Mechanosensitive ion channel EP13_12035 PF01627 Hpt domain EP13_12035 PF00672 HAMP domain EP13_12035 PF00512 His Kinase A (phospho-acceptor) domain EP13_12035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_12035 PF00072 Response regulator receiver domain EP13_12035 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP13_12050 PF04315 Elongation factor P hydroxylase EP13_12070 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP13_12070 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP13_12075 PF00378 Enoyl-CoA hydratase/isomerase EP13_12080 PF00440 Bacterial regulatory proteins, tetR family EP13_12080 PF02909 Tetracyclin repressor-like, C-terminal domain EP13_12085 PF05199 GMC oxidoreductase EP13_12085 PF00732 GMC oxidoreductase EP13_12095 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain EP13_12095 PF06974 Protein of unknown function (DUF1298) EP13_12105 PF04286 Protein of unknown function (DUF445) EP13_12130 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EP13_12130 PF00326 Prolyl oligopeptidase family EP13_12135 PF00392 Bacterial regulatory proteins, gntR family EP13_12135 PF07840 FadR C-terminal domain EP13_12140 PF06450 Bacterial Na+/H+ antiporter B (NhaB) EP13_12145 PF02600 Disulfide bond formation protein DsbB EP13_12150 PF13302 Acetyltransferase (GNAT) domain EP13_12155 PF03692 Putative zinc- or iron-chelating domain EP13_12160 PF01557 Fumarylacetoacetate (FAA) hydrolase family EP13_12170 PF05166 YcgL domain EP13_12175 PF00570 HRDC domain EP13_12175 PF01612 3'-5' exonuclease EP13_12180 PF13193 AMP-binding enzyme C-terminal domain EP13_12180 PF00501 AMP-binding enzyme EP13_12185 PF12697 Alpha/beta hydrolase family EP13_12200 PF00814 Glycoprotease family EP13_12205 PF06733 DEAD_2 EP13_12205 PF13307 Helicase C-terminal domain EP13_12215 PF02903 Alpha amylase, N-terminal ig-like domain EP13_12215 PF16657 Maltogenic Amylase, C-terminal domain EP13_12215 PF00128 Alpha amylase, catalytic domain EP13_12235 PF07715 TonB-dependent Receptor Plug Domain EP13_12235 PF00593 TonB dependent receptor EP13_12245 PF01634 ATP phosphoribosyltransferase EP13_12245 PF08029 HisG, C-terminal domain EP13_12250 PF00815 Histidinol dehydrogenase EP13_12255 PF00155 Aminotransferase class I and II EP13_12260 PF00475 Imidazoleglycerol-phosphate dehydratase EP13_12265 PF00117 Glutamine amidotransferase class-I EP13_12270 PF00977 Histidine biosynthesis protein EP13_12275 PF00977 Histidine biosynthesis protein EP13_12280 PF01502 Phosphoribosyl-AMP cyclohydrolase EP13_12280 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase EP13_12295 PF01226 Formate/nitrite transporter EP13_12310 PF00593 TonB dependent receptor EP13_12310 PF07715 TonB-dependent Receptor Plug Domain EP13_12320 PF05191 Adenylate kinase, active site lid EP13_12330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_12330 PF00183 Hsp90 protein EP13_12335 PF13662 Toprim domain EP13_12335 PF02132 RecR protein EP13_12350 PF02575 YbaB/EbfC DNA-binding family EP13_12355 PF12169 DNA polymerase III subunits gamma and tau domain III EP13_12355 PF12170 DNA polymerase III tau subunit V interacting with alpha EP13_12360 PF00156 Phosphoribosyl transferase domain EP13_12370 PF05114 Protein of unknown function (DUF692) EP13_12380 PF12894 Anaphase-promoting complex subunit 4 WD40 domain EP13_12380 PF00400 WD domain, G-beta repeat EP13_12395 PF00360 Phytochrome region EP13_12395 PF00990 Diguanylate cyclase, GGDEF domain EP13_12395 PF01590 GAF domain EP13_12395 PF00563 EAL domain EP13_12425 PF01066 CDP-alcohol phosphatidyltransferase EP13_12445 PF10431 C-terminal, D2-small domain, of ClpB protein EP13_12445 PF07724 AAA domain (Cdc48 subfamily) EP13_12445 PF02861 Clp amino terminal domain, pathogenicity island component EP13_12445 PF17871 AAA lid domain EP13_12445 PF00004 ATPase family associated with various cellular activities (AAA) EP13_12455 PF00849 RNA pseudouridylate synthase EP13_12455 PF01479 S4 domain EP13_12460 PF13525 Outer membrane lipoprotein EP13_12470 PF04545 Sigma-70, region 4 EP13_12470 PF04542 Sigma-70 region 2 EP13_12485 PF00106 short chain dehydrogenase EP13_12505 PF13677 Membrane MotB of proton-channel complex MotA/MotB EP13_12505 PF00691 OmpA family EP13_12510 PF01618 MotA/TolQ/ExbB proton channel family EP13_12515 PF02609 Exonuclease VII small subunit EP13_12520 PF00348 Polyprenyl synthetase EP13_12525 PF02780 Transketolase, C-terminal domain EP13_12525 PF02779 Transketolase, pyrimidine binding domain EP13_12525 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EP13_12530 PF04608 Phosphatidylglycerophosphatase A EP13_12535 PF00586 AIR synthase related protein, N-terminal domain EP13_12535 PF02769 AIR synthase related protein, C-terminal domain EP13_12540 PF01029 NusB family EP13_12545 PF00885 6,7-dimethyl-8-ribityllumazine synthase EP13_12550 PF00925 GTP cyclohydrolase II EP13_12550 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EP13_12555 PF00677 Lumazine binding domain EP13_12560 PF01872 RibD C-terminal domain EP13_12560 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EP13_12565 PF03477 ATP cone domain EP13_12570 PF00464 Serine hydroxymethyltransferase EP13_12575 PF00132 Bacterial transferase hexapeptide (six repeats) EP13_12575 PF14602 Hexapeptide repeat of succinyl-transferase EP13_12575 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EP13_12580 PF12848 ABC transporter EP13_12580 PF00005 ABC transporter EP13_12590 PF18073 Rubredoxin metal binding domain EP13_12600 PF18429 Domain of unknown function (DUF5609) EP13_12610 PF01026 TatD related DNase EP13_12615 PF01243 Pyridoxamine 5'-phosphate oxidase EP13_12615 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region EP13_12620 PF01926 50S ribosome-binding GTPase EP13_12620 PF07650 KH domain EP13_12625 PF14622 Ribonuclease-III-like EP13_12625 PF00035 Double-stranded RNA binding motif EP13_12630 PF10502 Signal peptidase, peptidase S26 EP13_12635 PF00679 Elongation factor G C-terminus EP13_12635 PF00009 Elongation factor Tu GTP binding domain EP13_12635 PF03144 Elongation factor Tu domain 2 EP13_12635 PF06421 GTP-binding protein LepA C-terminus EP13_12645 PF03888 MucB/RseB N-terminal domain EP13_12645 PF17188 MucB/RseB C-terminal domain EP13_12655 PF08281 Sigma-70, region 4 EP13_12655 PF04542 Sigma-70 region 2 EP13_12660 PF00890 FAD binding domain EP13_12660 PF02910 Fumarate reductase flavoprotein C-term EP13_12675 PF03937 Flavinator of succinate dehydrogenase EP13_12685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP13_12690 PF00543 Nitrogen regulatory protein P-II EP13_12695 PF02540 NAD synthase EP13_12755 PF02401 LytB protein EP13_12760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP13_12765 PF01252 Signal peptidase (SPase) II EP13_12770 PF06827 Zinc finger found in FPG and IleRS EP13_12770 PF08264 Anticodon-binding domain of tRNA EP13_12770 PF00133 tRNA synthetases class I (I, L, M and V) EP13_12775 PF01687 Riboflavin kinase EP13_12775 PF06574 FAD synthetase EP13_12780 PF03023 Lipid II flippase MurJ EP13_12785 PF01649 Ribosomal protein S20 EP13_12790 PF00106 short chain dehydrogenase EP13_12805 PF01546 Peptidase family M20/M25/M40 EP13_12805 PF07687 Peptidase dimerisation domain EP13_12820 PF00216 Bacterial DNA-binding protein EP13_12825 PF00004 ATPase family associated with various cellular activities (AAA) EP13_12825 PF05362 Lon protease (S16) C-terminal proteolytic domain EP13_12825 PF02190 ATP-dependent protease La (LON) substrate-binding domain EP13_12830 PF06689 ClpX C4-type zinc finger EP13_12830 PF10431 C-terminal, D2-small domain, of ClpB protein EP13_12830 PF07724 AAA domain (Cdc48 subfamily) EP13_12835 PF00574 Clp protease EP13_12840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP13_12840 PF05698 Bacterial trigger factor protein (TF) C-terminus EP13_12840 PF05697 Bacterial trigger factor protein (TF) EP13_12870 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EP13_12870 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EP13_12880 PF01980 tRNA-methyltransferase O EP13_12880 PF18389 TrmO C-terminal domain EP13_12885 PF03129 Anticodon binding domain EP13_12885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP13_12895 PF02253 Phospholipase A1 EP13_12900 PF00850 Histone deacetylase domain EP13_12905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_12905 PF00672 HAMP domain EP13_12910 PF00117 Glutamine amidotransferase class-I EP13_12910 PF00958 GMP synthase C terminal domain EP13_12910 PF02540 NAD synthase EP13_12915 PF00571 CBS domain EP13_12915 PF00478 IMP dehydrogenase / GMP reductase domain EP13_12920 PF02601 Exonuclease VII, large subunit EP13_12920 PF13742 OB-fold nucleic acid binding domain EP13_12930 PF01926 50S ribosome-binding GTPase EP13_12930 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EP13_12935 PF13360 PQQ-like domain EP13_12940 PF09976 Tetratricopeptide repeat-like domain EP13_12945 PF03129 Anticodon binding domain EP13_12945 PF13393 Histidyl-tRNA synthetase EP13_12950 PF04551 GcpE protein EP13_12955 PF13464 Domain of unknown function (DUF4115) EP13_12965 PF04055 Radical SAM superfamily EP13_12970 PF00334 Nucleoside diphosphate kinase EP13_12975 PF02657 Fe-S metabolism associated domain EP13_12980 PF01883 Iron-sulfur cluster assembly protein EP13_12985 PF01521 Iron-sulphur cluster biosynthesis EP13_12990 PF00266 Aminotransferase class-V EP13_12995 PF01458 Uncharacterized protein family (UPF0051) EP13_13000 PF00005 ABC transporter EP13_13005 PF01458 Uncharacterized protein family (UPF0051) EP13_13010 PF00266 Aminotransferase class-V EP13_13015 PF02082 Transcriptional regulator EP13_13020 PF00132 Bacterial transferase hexapeptide (six repeats) EP13_13020 PF06426 Serine acetyltransferase, N-terminal EP13_13025 PF00588 SpoU rRNA Methylase family EP13_13030 PF00459 Inositol monophosphatase family EP13_13045 PF07549 SecD/SecF GG Motif EP13_13045 PF02355 Protein export membrane protein EP13_13050 PF07549 SecD/SecF GG Motif EP13_13050 PF13721 SecD export protein N-terminal TM region EP13_13050 PF02355 Protein export membrane protein EP13_13055 PF02699 Preprotein translocase subunit EP13_13060 PF01702 Queuine tRNA-ribosyltransferase EP13_13065 PF02547 Queuosine biosynthesis protein EP13_13080 PF04012 PspA/IM30 family EP13_13085 PF07885 Ion channel EP13_13105 PF03738 Glutathionylspermidine synthase preATP-grasp EP13_13120 PF04960 Glutaminase EP13_13125 PF00245 Alkaline phosphatase EP13_13130 PF00072 Response regulator receiver domain EP13_13135 PF00463 Isocitrate lyase family EP13_13140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_13140 PF03466 LysR substrate binding domain EP13_13145 PF01274 Malate synthase EP13_13170 PF02913 FAD linked oxidases, C-terminal domain EP13_13170 PF01565 FAD binding domain EP13_13195 PF00483 Nucleotidyl transferase EP13_13195 PF00132 Bacterial transferase hexapeptide (six repeats) EP13_13195 PF14602 Hexapeptide repeat of succinyl-transferase EP13_13230 PF13537 Glutamine amidotransferase domain EP13_13230 PF00733 Asparagine synthase EP13_13285 PF14667 Polysaccharide biosynthesis C-terminal domain EP13_13310 PF01522 Polysaccharide deacetylase EP13_13315 PF02397 Bacterial sugar transferase EP13_13330 PF13614 AAA domain EP13_13340 PF13401 AAA domain EP13_13340 PF01471 Putative peptidoglycan binding domain EP13_13345 PF00294 pfkB family carbohydrate kinase EP13_13345 PF01467 Cytidylyltransferase-like EP13_13350 PF01541 GIY-YIG catalytic domain EP13_13360 PF03710 Glutamate-ammonia ligase adenylyltransferase EP13_13360 PF08335 GlnD PII-uridylyltransferase EP13_13370 PF03279 Bacterial lipid A biosynthesis acyltransferase EP13_13380 PF09317 Domain of unknown function (DUF1974) EP13_13380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP13_13380 PF02770 Acyl-CoA dehydrogenase, middle domain EP13_13380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP13_13395 PF00563 EAL domain EP13_13395 PF00990 Diguanylate cyclase, GGDEF domain EP13_13395 PF03707 Bacterial signalling protein N terminal repeat EP13_13400 PF00265 Thymidine kinase EP13_13405 PF00356 Bacterial regulatory proteins, lacI family EP13_13445 PF01926 50S ribosome-binding GTPase EP13_13450 PF08032 RNA 2'-O ribose methyltransferase substrate binding EP13_13450 PF00588 SpoU rRNA Methylase family EP13_13475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP13_13475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP13_13475 PF00378 Enoyl-CoA hydratase/isomerase EP13_13490 PF05971 RNA methyltransferase EP13_13510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP13_13510 PF02770 Acyl-CoA dehydrogenase, middle domain EP13_13510 PF18158 Adaptive response protein AidB N-terminal domain EP13_13525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP13_13535 PF00111 2Fe-2S iron-sulfur cluster binding domain EP13_13535 PF01799 [2Fe-2S] binding domain EP13_13540 PF00941 FAD binding domain in molybdopterin dehydrogenase EP13_13540 PF03450 CO dehydrogenase flavoprotein C-terminal domain EP13_13545 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EP13_13545 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EP13_13550 PF00881 Nitroreductase family EP13_13555 PF12633 Adenylate cyclase NT domain EP13_13555 PF01295 Adenylate cyclase, class-I EP13_13565 PF00144 Beta-lactamase EP13_13565 PF11954 Domain of unknown function (DUF3471) EP13_13595 PF03466 LysR substrate binding domain EP13_13595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_13600 PF07683 Cobalamin synthesis protein cobW C-terminal domain EP13_13600 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP13_13605 PF01738 Dienelactone hydrolase family EP13_13615 PF00128 Alpha amylase, catalytic domain EP13_13625 PF01965 DJ-1/PfpI family EP13_13640 PF03466 LysR substrate binding domain EP13_13640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_13645 PF00860 Permease family EP13_13650 PF01979 Amidohydrolase family EP13_13660 PF04542 Sigma-70 region 2 EP13_13660 PF08281 Sigma-70, region 4 EP13_13690 PF07715 TonB-dependent Receptor Plug Domain EP13_13690 PF00593 TonB dependent receptor EP13_13705 PF03631 Virulence factor BrkB EP13_13710 PF00196 Bacterial regulatory proteins, luxR family EP13_13710 PF00072 Response regulator receiver domain EP13_13730 PF07715 TonB-dependent Receptor Plug Domain EP13_13730 PF00593 TonB dependent receptor EP13_13730 PF07660 Secretin and TonB N terminus short domain EP13_13750 PF03965 Penicillinase repressor EP13_13780 PF07152 YaeQ protein EP13_13830 PF00271 Helicase conserved C-terminal domain EP13_13830 PF09382 RQC domain EP13_13830 PF00270 DEAD/DEAH box helicase EP13_13830 PF16124 RecQ zinc-binding EP13_13830 PF00570 HRDC domain EP13_13835 PF12697 Alpha/beta hydrolase family EP13_13855 PF00672 HAMP domain EP13_13855 PF01627 Hpt domain EP13_13855 PF00072 Response regulator receiver domain EP13_13855 PF00512 His Kinase A (phospho-acceptor) domain EP13_13855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_13855 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP13_13860 PF04542 Sigma-70 region 2 EP13_13860 PF08281 Sigma-70, region 4 EP13_13870 PF02566 OsmC-like protein EP13_13875 PF01625 Peptide methionine sulfoxide reductase EP13_13880 PF00512 His Kinase A (phospho-acceptor) domain EP13_13880 PF00672 HAMP domain EP13_13880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_13880 PF00072 Response regulator receiver domain EP13_13880 PF01627 Hpt domain EP13_13880 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP13_13890 PF00005 ABC transporter EP13_13905 PF00271 Helicase conserved C-terminal domain EP13_13905 PF00270 DEAD/DEAH box helicase EP13_13920 PF00596 Class II Aldolase and Adducin N-terminal domain EP13_13935 PF13533 Biotin-lipoyl like EP13_13940 PF12704 MacB-like periplasmic core domain EP13_13940 PF02687 FtsX-like permease family EP13_13940 PF00005 ABC transporter EP13_13945 PF12704 MacB-like periplasmic core domain EP13_13945 PF02687 FtsX-like permease family EP13_13945 PF00005 ABC transporter EP13_13955 PF00158 Sigma-54 interaction domain EP13_13955 PF00072 Response regulator receiver domain EP13_13955 PF02954 Bacterial regulatory protein, Fis family EP13_13960 PF00512 His Kinase A (phospho-acceptor) domain EP13_13960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_13960 PF02743 Cache domain EP13_13975 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EP13_13975 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EP13_14015 PF01597 Glycine cleavage H-protein EP13_14020 PF01571 Aminomethyltransferase folate-binding domain EP13_14020 PF08669 Glycine cleavage T-protein C-terminal barrel domain EP13_14035 PF00356 Bacterial regulatory proteins, lacI family EP13_14045 PF01869 BadF/BadG/BcrA/BcrD ATPase family EP13_14050 PF01380 SIS domain EP13_14055 PF01979 Amidohydrolase family EP13_14065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_14065 PF03466 LysR substrate binding domain EP13_14070 PF01321 Creatinase/Prolidase N-terminal domain EP13_14070 PF00557 Metallopeptidase family M24 EP13_14080 PF01494 FAD binding domain EP13_14085 PF01494 FAD binding domain EP13_14090 PF00557 Metallopeptidase family M24 EP13_14090 PF05195 Aminopeptidase P, N-terminal domain EP13_14095 PF03695 Uncharacterised protein family (UPF0149) EP13_14100 PF00294 pfkB family carbohydrate kinase EP13_14105 PF01156 Inosine-uridine preferring nucleoside hydrolase EP13_14110 PF01812 5-formyltetrahydrofolate cyclo-ligase family EP13_14115 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EP13_14120 PF01842 ACT domain EP13_14120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP13_14120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP13_14140 PF06945 Protein of unknown function (DUF1289) EP13_14145 PF00873 AcrB/AcrD/AcrF family EP13_14150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP13_14155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_14155 PF03466 LysR substrate binding domain EP13_14160 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EP13_14160 PF13378 Enolase C-terminal domain-like EP13_14175 PF13419 Haloacid dehalogenase-like hydrolase EP13_14180 PF00171 Aldehyde dehydrogenase family EP13_14185 PF00205 Thiamine pyrophosphate enzyme, central domain EP13_14185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP13_14185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP13_14190 PF00294 pfkB family carbohydrate kinase EP13_14195 PF13580 SIS domain EP13_14200 PF04962 KduI/IolB family EP13_14205 PF00356 Bacterial regulatory proteins, lacI family EP13_14215 PF02614 Glucuronate isomerase EP13_14230 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EP13_14230 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EP13_14240 PF00528 Binding-protein-dependent transport system inner membrane component EP13_14245 PF00528 Binding-protein-dependent transport system inner membrane component EP13_14250 PF17912 MalK OB fold domain EP13_14250 PF00005 ABC transporter EP13_14255 PF07715 TonB-dependent Receptor Plug Domain EP13_14255 PF00593 TonB dependent receptor EP13_14275 PF07690 Major Facilitator Superfamily EP13_14295 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP13_14295 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP13_14300 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP13_14300 PF00364 Biotin-requiring enzyme EP13_14300 PF02817 e3 binding domain EP13_14305 PF00456 Transketolase, thiamine diphosphate binding domain EP13_14305 PF17831 Pyruvate dehydrogenase E1 component middle domain EP13_14315 PF00392 Bacterial regulatory proteins, gntR family EP13_14315 PF07729 FCD domain EP13_14325 PF01510 N-acetylmuramoyl-L-alanine amidase EP13_14335 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain EP13_14335 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain EP13_14340 PF07963 Prokaryotic N-terminal methylation motif EP13_14345 PF00482 Type II secretion system (T2SS), protein F EP13_14350 PF01478 Type IV leader peptidase family EP13_14350 PF06750 Bacterial Peptidase A24 N-terminal domain EP13_14355 PF01121 Dephospho-CoA kinase EP13_14360 PF07072 Cell division protein EP13_14365 PF03884 DNA gyrase inhibitor YacG EP13_14375 PF00356 Bacterial regulatory proteins, lacI family EP13_14380 PF01306 LacY proton/sugar symporter EP13_14385 PF00251 Glycosyl hydrolases family 32 N-terminal domain EP13_14385 PF08244 Glycosyl hydrolases family 32 C terminal EP13_14390 PF00083 Sugar (and other) transporter EP13_14400 PF07715 TonB-dependent Receptor Plug Domain EP13_14400 PF00593 TonB dependent receptor EP13_14405 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EP13_14410 PF00293 NUDIX domain EP13_14415 PF07516 SecA Wing and Scaffold domain EP13_14415 PF07517 SecA DEAD-like domain EP13_14415 PF01043 SecA preprotein cross-linking domain EP13_14415 PF02810 SEC-C motif EP13_14420 PF01476 LysM domain EP13_14420 PF01551 Peptidase family M23 EP13_14420 PF08525 Opacity-associated protein A N-terminal motif EP13_14425 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase EP13_14430 PF12327 FtsZ family, C-terminal domain EP13_14430 PF00091 Tubulin/FtsZ family, GTPase domain EP13_14435 PF02491 SHS2 domain inserted in FTSA EP13_14440 PF03799 Cell division protein FtsQ EP13_14440 PF08478 POTRA domain, FtsQ-type EP13_14445 PF07478 D-ala D-ala ligase C-terminus EP13_14445 PF01820 D-ala D-ala ligase N-terminus EP13_14450 PF01225 Mur ligase family, catalytic domain EP13_14450 PF08245 Mur ligase middle domain EP13_14450 PF02875 Mur ligase family, glutamate ligase domain EP13_14455 PF03033 Glycosyltransferase family 28 N-terminal domain EP13_14455 PF04101 Glycosyltransferase family 28 C-terminal domain EP13_14460 PF01098 Cell cycle protein EP13_14465 PF08245 Mur ligase middle domain EP13_14465 PF02875 Mur ligase family, glutamate ligase domain EP13_14470 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 EP13_14470 PF00953 Glycosyl transferase family 4 EP13_14475 PF02875 Mur ligase family, glutamate ligase domain EP13_14475 PF08245 Mur ligase middle domain EP13_14475 PF01225 Mur ligase family, catalytic domain EP13_14480 PF02875 Mur ligase family, glutamate ligase domain EP13_14480 PF08245 Mur ligase middle domain EP13_14480 PF01225 Mur ligase family, catalytic domain EP13_14485 PF00905 Penicillin binding protein transpeptidase domain EP13_14485 PF03717 Penicillin-binding Protein dimerisation domain EP13_14490 PF04999 Cell division protein FtsL EP13_14495 PF01795 MraW methylase family EP13_14500 PF02381 MraZ protein, putative antitoxin-like EP13_14510 PF01244 Membrane dipeptidase (Peptidase family M19) EP13_14515 PF00873 AcrB/AcrD/AcrF family EP13_14540 PF00462 Glutaredoxin EP13_14540 PF08534 Redoxin EP13_14555 PF04231 Endonuclease I EP13_14560 PF02954 Bacterial regulatory protein, Fis family EP13_14560 PF00072 Response regulator receiver domain EP13_14560 PF00158 Sigma-54 interaction domain EP13_14570 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EP13_14570 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EP13_14575 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP13_14575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP13_14580 PF07690 Major Facilitator Superfamily EP13_14610 PF05552 Conserved TM helix EP13_14610 PF00924 Mechanosensitive ion channel EP13_14620 PF04452 RNA methyltransferase EP13_14630 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EP13_14630 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EP13_14635 PF02622 Uncharacterized ACR, COG1678 EP13_14640 PF03652 Holliday junction resolvase EP13_14650 PF00437 Type II/IV secretion system protein EP13_14655 PF00437 Type II/IV secretion system protein EP13_14660 PF01168 Alanine racemase, N-terminal domain EP13_14665 PF14748 Pyrroline-5-carboxylate reductase dimerisation EP13_14665 PF03807 NADP oxidoreductase coenzyme F420-dependent EP13_14670 PF02325 YGGT family EP13_14680 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP13_14680 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP13_14695 PF08787 Alginate lyase EP13_14710 PF03591 AzlC protein EP13_14725 PF03883 Peroxide stress protein YaaA EP13_14730 PF00923 Transaldolase/Fructose-6-phosphate aldolase EP13_14735 PF00342 Phosphoglucose isomerase EP13_14745 PF03167 Uracil DNA glycosylase superfamily EP13_14750 PF14821 Threonine synthase N terminus EP13_14750 PF00291 Pyridoxal-phosphate dependent enzyme EP13_14755 PF00288 GHMP kinases N terminal domain EP13_14755 PF08544 GHMP kinases C terminal EP13_14760 PF03447 Homoserine dehydrogenase, NAD binding domain EP13_14760 PF00742 Homoserine dehydrogenase EP13_14760 PF13840 ACT domain EP13_14760 PF01842 ACT domain EP13_14760 PF00696 Amino acid kinase family EP13_14765 PF03466 LysR substrate binding domain EP13_14765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_14770 PF08240 Alcohol dehydrogenase GroES-like domain EP13_14770 PF00107 Zinc-binding dehydrogenase EP13_14780 PF01022 Bacterial regulatory protein, arsR family EP13_14790 PF03358 NADPH-dependent FMN reductase EP13_14795 PF01758 Sodium Bile acid symporter family EP13_14800 PF00072 Response regulator receiver domain EP13_14805 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) EP13_14810 PF00072 Response regulator receiver domain EP13_14810 PF00486 Transcriptional regulatory protein, C terminal EP13_14830 PF00291 Pyridoxal-phosphate dependent enzyme EP13_14840 PF03435 Saccharopine dehydrogenase NADP binding domain EP13_14840 PF16653 Saccharopine dehydrogenase C-terminal domain EP13_14845 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EP13_14855 PF00990 Diguanylate cyclase, GGDEF domain EP13_14860 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EP13_14870 PF02021 Uncharacterised protein family UPF0102 EP13_14875 PF13580 SIS domain EP13_14880 PF04972 BON domain EP13_14885 PF07690 Major Facilitator Superfamily EP13_14890 PF07715 TonB-dependent Receptor Plug Domain EP13_14890 PF00593 TonB dependent receptor EP13_14910 PF00285 Citrate synthase, C-terminal domain EP13_14915 PF00330 Aconitase family (aconitate hydratase) EP13_14915 PF00694 Aconitase C-terminal domain EP13_14920 PF04303 PrpF protein EP13_14925 PF00990 Diguanylate cyclase, GGDEF domain EP13_14930 PF00474 Sodium:solute symporter family EP13_14945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_14945 PF00512 His Kinase A (phospho-acceptor) domain EP13_14945 PF18415 Histidine kinase receptor ArcB trans-membrane domain EP13_14945 PF01627 Hpt domain EP13_14945 PF00072 Response regulator receiver domain EP13_14945 PF00989 PAS fold EP13_14950 PF01510 N-acetylmuramoyl-L-alanine amidase EP13_14960 PF00310 Glutamine amidotransferases class-II EP13_14960 PF01493 GXGXG motif EP13_14960 PF01645 Conserved region in glutamate synthase EP13_14960 PF04898 Glutamate synthase central domain EP13_14965 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EP13_14965 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP13_14980 PF01048 Phosphorylase superfamily EP13_15015 PF01070 FMN-dependent dehydrogenase EP13_15020 PF01261 Xylose isomerase-like TIM barrel EP13_15025 PF00596 Class II Aldolase and Adducin N-terminal domain EP13_15030 PF08220 DeoR-like helix-turn-helix domain EP13_15030 PF00455 DeoR C terminal sensor domain EP13_15040 PF00294 pfkB family carbohydrate kinase EP13_15065 PF07470 Glycosyl Hydrolase Family 88 EP13_15080 PF05336 L-rhamnose mutarotase EP13_15095 PF00581 Rhodanese-like domain EP13_15105 PF07237 Protein of unknown function (DUF1428) EP13_15115 PF01551 Peptidase family M23 EP13_15115 PF10145 Phage-related minor tail protein EP13_15115 PF01464 Transglycosylase SLT domain EP13_15120 PF03702 Anhydro-N-acetylmuramic acid kinase EP13_15125 PF00072 Response regulator receiver domain EP13_15140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP13_15150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP13_15155 PF00043 Glutathione S-transferase, C-terminal domain EP13_15155 PF13417 Glutathione S-transferase, N-terminal domain EP13_15160 PF01521 Iron-sulphur cluster biosynthesis EP13_15175 PF03976 Polyphosphate kinase 2 (PPK2) EP13_15180 PF03776 Septum formation topological specificity factor MinE EP13_15185 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EP13_15190 PF05209 Septum formation inhibitor MinC, N-terminal domain EP13_15190 PF03775 Septum formation inhibitor MinC, C-terminal domain EP13_15195 PF00206 Lyase EP13_15195 PF10415 Fumarase C C-terminus EP13_15200 PF00127 Copper binding proteins, plastocyanin/azurin family EP13_15235 PF01566 Natural resistance-associated macrophage protein EP13_15245 PF00196 Bacterial regulatory proteins, luxR family EP13_15245 PF00072 Response regulator receiver domain EP13_15260 PF03951 Glutamine synthetase, beta-Grasp domain EP13_15260 PF00120 Glutamine synthetase, catalytic domain EP13_15270 PF00989 PAS fold EP13_15270 PF00512 His Kinase A (phospho-acceptor) domain EP13_15270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_15275 PF00158 Sigma-54 interaction domain EP13_15275 PF00072 Response regulator receiver domain EP13_15275 PF02954 Bacterial regulatory protein, Fis family EP13_15280 PF00072 Response regulator receiver domain EP13_15285 PF01553 Acyltransferase EP13_15290 PF06877 Regulator of ribonuclease activity B EP13_15300 PF00990 Diguanylate cyclase, GGDEF domain EP13_15310 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP13_15310 PF01627 Hpt domain EP13_15310 PF00672 HAMP domain EP13_15310 PF00072 Response regulator receiver domain EP13_15310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_15310 PF00512 His Kinase A (phospho-acceptor) domain EP13_15315 PF10458 Valyl tRNA synthetase tRNA binding arm EP13_15315 PF00133 tRNA synthetases class I (I, L, M and V) EP13_15315 PF08264 Anticodon-binding domain of tRNA EP13_15320 PF04364 DNA polymerase III chi subunit, HolC EP13_15325 PF00883 Cytosol aminopeptidase family, catalytic domain EP13_15325 PF02789 Cytosol aminopeptidase family, N-terminal domain EP13_15330 PF03739 Lipopolysaccharide export system permease LptF/LptG EP13_15335 PF03739 Lipopolysaccharide export system permease LptF/LptG EP13_15375 PF05853 beta-keto acid cleavage enzyme EP13_15380 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP13_15380 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP13_15405 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EP13_15405 PF13360 PQQ-like domain EP13_15430 PF00005 ABC transporter EP13_15445 PF12706 Beta-lactamase superfamily domain EP13_15450 PF03070 TENA/THI-4/PQQC family EP13_15455 PF05402 Coenzyme PQQ synthesis protein D (PqqD) EP13_15460 PF04055 Radical SAM superfamily EP13_15460 PF13186 Iron-sulfur cluster-binding domain EP13_15490 PF00196 Bacterial regulatory proteins, luxR family EP13_15490 PF00072 Response regulator receiver domain EP13_15495 PF00072 Response regulator receiver domain EP13_15495 PF09456 RcsC Alpha-Beta-Loop (ABL) EP13_15495 PF00512 His Kinase A (phospho-acceptor) domain EP13_15495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_15505 PF12801 4Fe-4S binding domain EP13_15505 PF04205 FMN-binding domain EP13_15510 PF00171 Aldehyde dehydrogenase family EP13_15515 PF00196 Bacterial regulatory proteins, luxR family EP13_15515 PF00072 Response regulator receiver domain EP13_15520 PF07730 Histidine kinase EP13_15545 PF02696 Uncharacterized ACR, YdiU/UPF0061 family EP13_15555 PF14684 Tricorn protease C1 domain EP13_15555 PF03572 Peptidase family S41 EP13_15555 PF07676 WD40-like Beta Propeller Repeat EP13_15555 PF14685 Tricorn protease PDZ domain EP13_15560 PF00593 TonB dependent receptor EP13_15595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_15595 PF08447 PAS fold EP13_15595 PF13426 PAS domain EP13_15600 PF00375 Sodium:dicarboxylate symporter family EP13_15610 PF03527 RHS protein EP13_15610 PF05593 RHS Repeat EP13_15615 PF07715 TonB-dependent Receptor Plug Domain EP13_15615 PF00593 TonB dependent receptor EP13_15625 PF01032 FecCD transport family EP13_15630 PF00005 ABC transporter EP13_15635 PF05221 S-adenosyl-L-homocysteine hydrolase EP13_15635 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EP13_15640 PF14592 Chondroitinase B EP13_15645 PF01202 Shikimate kinase EP13_15670 PF08787 Alginate lyase EP13_15675 PF00356 Bacterial regulatory proteins, lacI family EP13_15685 PF05426 Alginate lyase EP13_15685 PF07940 Heparinase II/III-like protein EP13_15695 PF13419 Haloacid dehalogenase-like hydrolase EP13_15700 PF08402 TOBE domain EP13_15700 PF00005 ABC transporter EP13_15705 PF00528 Binding-protein-dependent transport system inner membrane component EP13_15710 PF00528 Binding-protein-dependent transport system inner membrane component EP13_15730 PF12697 Alpha/beta hydrolase family EP13_15740 PF01433 Peptidase family M1 domain EP13_15740 PF11838 ERAP1-like C-terminal domain EP13_15745 PF00005 ABC transporter EP13_15770 PF00271 Helicase conserved C-terminal domain EP13_15770 PF00270 DEAD/DEAH box helicase EP13_15775 PF01081 KDPG and KHG aldolase EP13_15780 PF00294 pfkB family carbohydrate kinase EP13_15790 PF07729 FCD domain EP13_15790 PF00392 Bacterial regulatory proteins, gntR family EP13_15795 PF12795 Mechanosensitive ion channel porin domain EP13_15795 PF12794 Mechanosensitive ion channel inner membrane domain 1 EP13_15795 PF00924 Mechanosensitive ion channel EP13_15810 PF00141 Peroxidase EP13_15820 PF02254 TrkA-N domain EP13_15820 PF00999 Sodium/hydrogen exchanger family EP13_15835 PF03372 Endonuclease/Exonuclease/phosphatase family EP13_15840 PF03466 LysR substrate binding domain EP13_15840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_15850 PF01925 Sulfite exporter TauE/SafE EP13_15855 PF00155 Aminotransferase class I and II EP13_15860 PF08769 Sporulation initiation factor Spo0A C terminal EP13_15860 PF00072 Response regulator receiver domain EP13_15870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_15870 PF00512 His Kinase A (phospho-acceptor) domain EP13_15875 PF03104 DNA polymerase family B, exonuclease domain EP13_15875 PF00136 DNA polymerase family B EP13_15920 PF05958 tRNA (Uracil-5-)-methyltransferase EP13_15925 PF00440 Bacterial regulatory proteins, tetR family EP13_15935 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP13_15935 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP13_15945 PF03167 Uracil DNA glycosylase superfamily EP13_15950 PF03707 Bacterial signalling protein N terminal repeat EP13_15950 PF00990 Diguanylate cyclase, GGDEF domain EP13_15950 PF00563 EAL domain EP13_15960 PF01507 Phosphoadenosine phosphosulfate reductase family EP13_15965 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP13_15965 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP13_15970 PF00258 Flavodoxin EP13_15970 PF00667 FAD binding domain EP13_15970 PF00175 Oxidoreductase NAD-binding domain EP13_15995 PF04012 PspA/IM30 family EP13_16010 PF01207 Dihydrouridine synthase (Dus) EP13_16015 PF13454 FAD-NAD(P)-binding EP13_16030 PF00004 ATPase family associated with various cellular activities (AAA) EP13_16030 PF05362 Lon protease (S16) C-terminal proteolytic domain EP13_16030 PF02190 ATP-dependent protease La (LON) substrate-binding domain EP13_16035 PF00563 EAL domain EP13_16035 PF00990 Diguanylate cyclase, GGDEF domain EP13_16035 PF03707 Bacterial signalling protein N terminal repeat EP13_16040 PF00756 Putative esterase EP13_16045 PF01553 Acyltransferase EP13_16050 PF01553 Acyltransferase EP13_16055 PF00924 Mechanosensitive ion channel EP13_16070 PF01370 NAD dependent epimerase/dehydratase family EP13_16075 PF00209 Sodium:neurotransmitter symporter family EP13_16090 PF01625 Peptide methionine sulfoxide reductase EP13_16105 PF00258 Flavodoxin EP13_16115 PF02472 Biopolymer transport protein ExbD/TolR EP13_16130 PF05175 Methyltransferase small domain EP13_16140 PF00326 Prolyl oligopeptidase family EP13_16140 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region EP13_16145 PF08000 Bacterial PH domain EP13_16150 PF00563 EAL domain EP13_16150 PF00990 Diguanylate cyclase, GGDEF domain EP13_16150 PF08448 PAS fold EP13_16155 PF00291 Pyridoxal-phosphate dependent enzyme EP13_16160 PF07969 Amidohydrolase family EP13_16165 PF00753 Metallo-beta-lactamase superfamily EP13_16175 PF03466 LysR substrate binding domain EP13_16175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_16195 PF13230 Glutamine amidotransferases class-II EP13_16220 PF01037 Lrp/AsnC ligand binding domain EP13_16230 PF00005 ABC transporter EP13_16230 PF12704 MacB-like periplasmic core domain EP13_16230 PF02687 FtsX-like permease family EP13_16245 PF09905 DNA-binding protein VF530 EP13_16250 PF02447 GntP family permease EP13_16260 PF00356 Bacterial regulatory proteins, lacI family EP13_16275 PF00817 impB/mucB/samB family EP13_16275 PF11799 impB/mucB/samB family C-terminal domain EP13_16275 PF11798 IMS family HHH motif EP13_16285 PF02424 ApbE family EP13_16290 PF00111 2Fe-2S iron-sulfur cluster binding domain EP13_16290 PF00970 Oxidoreductase FAD-binding domain EP13_16290 PF00175 Oxidoreductase NAD-binding domain EP13_16295 PF02508 Rnf-Nqr subunit, membrane protein EP13_16300 PF02508 Rnf-Nqr subunit, membrane protein EP13_16305 PF04205 FMN-binding domain EP13_16310 PF03116 NQR2, RnfD, RnfE family EP13_16315 PF11973 NQRA C-terminal domain EP13_16315 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) EP13_16320 PF12241 Trans-2-enoyl-CoA reductase catalytic region EP13_16320 PF07055 Enoyl reductase FAD binding domain EP13_16320 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase EP13_16325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP13_16325 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EP13_16330 PF00311 Phosphoenolpyruvate carboxylase EP13_16340 PF00141 Peroxidase EP13_16350 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EP13_16350 PF00056 lactate/malate dehydrogenase, NAD binding domain EP13_16355 PF01316 Arginine repressor, DNA binding domain EP13_16355 PF02863 Arginine repressor, C-terminal domain EP13_16360 PF00593 TonB dependent receptor EP13_16360 PF07715 TonB-dependent Receptor Plug Domain EP13_16370 PF00593 TonB dependent receptor EP13_16385 PF00485 Phosphoribulokinase / Uridine kinase family EP13_16390 PF07662 Na+ dependent nucleoside transporter C-terminus EP13_16390 PF07670 Nucleoside recognition EP13_16390 PF01773 Na+ dependent nucleoside transporter N-terminus EP13_16410 PF00571 CBS domain EP13_16410 PF01380 SIS domain EP13_16415 PF00474 Sodium:solute symporter family EP13_16425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_16425 PF00512 His Kinase A (phospho-acceptor) domain EP13_16425 PF01627 Hpt domain EP13_16425 PF18415 Histidine kinase receptor ArcB trans-membrane domain EP13_16425 PF00989 PAS fold EP13_16425 PF00072 Response regulator receiver domain EP13_16435 PF18030 RimK PreATP-grasp domain EP13_16435 PF08443 RimK-like ATP-grasp domain EP13_16445 PF08443 RimK-like ATP-grasp domain EP13_16445 PF18030 RimK PreATP-grasp domain EP13_16455 PF00196 Bacterial regulatory proteins, luxR family EP13_16455 PF00072 Response regulator receiver domain EP13_16460 PF16177 Acetyl-coenzyme A synthetase N-terminus EP13_16460 PF00501 AMP-binding enzyme EP13_16460 PF13193 AMP-binding enzyme C-terminal domain EP13_16470 PF02690 Na+/Pi-cotransporter EP13_16475 PF00248 Aldo/keto reductase family EP13_16490 PF00199 Catalase EP13_16490 PF06628 Catalase-related immune-responsive EP13_16545 PF00664 ABC transporter transmembrane region EP13_16545 PF00005 ABC transporter EP13_16545 PF03412 Peptidase C39 family EP13_16550 PF03466 LysR substrate binding domain EP13_16550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_16575 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EP13_16575 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EP13_16575 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EP13_16580 PF00535 Glycosyl transferase family 2 EP13_16585 PF16363 GDP-mannose 4,6 dehydratase EP13_16590 PF04321 RmlD substrate binding domain EP13_16595 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase EP13_16600 PF00483 Nucleotidyl transferase EP13_16610 PF00535 Glycosyl transferase family 2 EP13_16640 PF00535 Glycosyl transferase family 2 EP13_16650 PF01050 Mannose-6-phosphate isomerase EP13_16650 PF00483 Nucleotidyl transferase EP13_16660 PF07196 Flagellin hook IN motif EP13_16660 PF00700 Bacterial flagellin C-terminal helical region EP13_16660 PF00669 Bacterial flagellin N-terminal helical region EP13_16665 PF01196 Ribosomal protein L17 EP13_16670 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EP13_16670 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EP13_16670 PF01000 RNA polymerase Rpb3/RpoA insert domain EP13_16675 PF01479 S4 domain EP13_16675 PF00163 Ribosomal protein S4/S9 N-terminal domain EP13_16680 PF00411 Ribosomal protein S11 EP13_16685 PF00416 Ribosomal protein S13/S18 EP13_16690 PF00344 SecY translocase EP13_16695 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EP13_16700 PF00327 Ribosomal protein L30p/L7e EP13_16705 PF00333 Ribosomal protein S5, N-terminal domain EP13_16705 PF03719 Ribosomal protein S5, C-terminal domain EP13_16710 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EP13_16715 PF00347 Ribosomal protein L6 EP13_16720 PF00410 Ribosomal protein S8 EP13_16725 PF00253 Ribosomal protein S14p/S29e EP13_16730 PF00281 Ribosomal protein L5 EP13_16730 PF00673 ribosomal L5P family C-terminus EP13_16735 PF00467 KOW motif EP13_16735 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EP13_16740 PF00238 Ribosomal protein L14p/L23e EP13_16745 PF00512 His Kinase A (phospho-acceptor) domain EP13_16745 PF09308 LuxQ, periplasmic EP13_16745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_16745 PF00072 Response regulator receiver domain EP13_16755 PF08032 RNA 2'-O ribose methyltransferase substrate binding EP13_16755 PF00588 SpoU rRNA Methylase family EP13_16765 PF16655 PhoD-like phosphatase, N-terminal domain EP13_16765 PF09423 PhoD-like phosphatase EP13_16775 PF08238 Sel1 repeat EP13_16790 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase EP13_16795 PF00970 Oxidoreductase FAD-binding domain EP13_16795 PF00175 Oxidoreductase NAD-binding domain EP13_16805 PF04389 Peptidase family M28 EP13_16845 PF01654 Cytochrome bd terminal oxidase subunit I EP13_16850 PF02322 Cytochrome bd terminal oxidase subunit II EP13_16860 PF12729 Four helix bundle sensory module for signal transduction EP13_16860 PF00672 HAMP domain EP13_16860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_16870 PF00313 'Cold-shock' DNA-binding domain EP13_16875 PF03109 ABC1 family EP13_16885 PF01209 ubiE/COQ5 methyltransferase family EP13_16895 PF01432 Peptidase family M3 EP13_16900 PF00072 Response regulator receiver domain EP13_16900 PF08769 Sporulation initiation factor Spo0A C terminal EP13_16910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_16910 PF00512 His Kinase A (phospho-acceptor) domain EP13_16910 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP13_16920 PF00072 Response regulator receiver domain EP13_16920 PF02954 Bacterial regulatory protein, Fis family EP13_16920 PF00158 Sigma-54 interaction domain EP13_16925 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP13_16925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP13_16930 PF00326 Prolyl oligopeptidase family EP13_16930 PF07676 WD40-like Beta Propeller Repeat EP13_16945 PF03412 Peptidase C39 family EP13_16945 PF00005 ABC transporter EP13_16945 PF00664 ABC transporter transmembrane region EP13_16965 PF00004 ATPase family associated with various cellular activities (AAA) EP13_16965 PF07724 AAA domain (Cdc48 subfamily) EP13_16970 PF00227 Proteasome subunit EP13_16975 PF05036 Sporulation related domain EP13_16980 PF00270 DEAD/DEAH box helicase EP13_16980 PF00271 Helicase conserved C-terminal domain EP13_16980 PF18074 Primosomal protein N C-terminal domain EP13_16980 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EP13_16980 PF17764 3′ DNA-binding domain (3′BD) EP13_16985 PF01197 Ribosomal protein L31 EP13_16995 PF00390 Malic enzyme, N-terminal domain EP13_16995 PF03949 Malic enzyme, NAD binding domain EP13_17000 PF01340 Met Apo-repressor, MetJ EP13_17005 PF02219 Methylenetetrahydrofolate reductase EP13_17010 PF03631 Virulence factor BrkB EP13_17025 PF00561 alpha/beta hydrolase fold EP13_17030 PF02580 D-Tyr-tRNA(Tyr) deacylase EP13_17035 PF09500 Putative thioesterase (yiiD_Cterm) EP13_17035 PF00583 Acetyltransferase (GNAT) family EP13_17040 PF00140 Sigma-70 factor, region 1.2 EP13_17040 PF04542 Sigma-70 region 2 EP13_17040 PF04545 Sigma-70, region 4 EP13_17045 PF00563 EAL domain EP13_17045 PF08668 HDOD domain EP13_17050 PF08668 HDOD domain EP13_17050 PF00563 EAL domain EP13_17055 PF18075 FtsX extracellular domain EP13_17060 PF00005 ABC transporter EP13_17065 PF00448 SRP54-type protein, GTPase domain EP13_17065 PF02881 SRP54-type protein, helical bundle domain EP13_17075 PF04222 Protein of unknown function (DUF416) EP13_17080 PF01914 MarC family integral membrane protein EP13_17090 PF00883 Cytosol aminopeptidase family, catalytic domain EP13_17090 PF12404 Peptidase EP13_17095 PF03749 Sugar fermentation stimulation protein RE domain EP13_17095 PF17746 SfsA N-terminal OB domain EP13_17100 PF01258 Prokaryotic dksA/traR C4-type zinc finger EP13_17110 PF12626 Polymerase A arginine-rich C-terminus EP13_17110 PF12627 Probable RNA and SrmB- binding site of polymerase A EP13_17110 PF01743 Poly A polymerase head domain EP13_17115 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EP13_17120 PF02548 Ketopantoate hydroxymethyltransferase EP13_17125 PF02569 Pantoate-beta-alanine ligase EP13_17130 PF00282 Pyridoxal-dependent decarboxylase conserved domain EP13_17140 PF01061 ABC-2 type transporter EP13_17145 PF00005 ABC transporter EP13_17155 PF00486 Transcriptional regulatory protein, C terminal EP13_17155 PF00072 Response regulator receiver domain EP13_17160 PF00672 HAMP domain EP13_17160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_17160 PF00512 His Kinase A (phospho-acceptor) domain EP13_17165 PF00593 TonB dependent receptor EP13_17165 PF07715 TonB-dependent Receptor Plug Domain EP13_17170 PF18331 PKHD-type hydroxylase C-terminal domain EP13_17170 PF13640 2OG-Fe(II) oxygenase superfamily EP13_17185 PF00571 CBS domain EP13_17185 PF01595 Cyclin M transmembrane N-terminal domain EP13_17190 PF03773 Predicted permease EP13_17195 PF13722 5TM C-terminal transporter carbon starvation CstA EP13_17195 PF02554 Carbon starvation protein CstA EP13_17215 PF03144 Elongation factor Tu domain 2 EP13_17215 PF00009 Elongation factor Tu GTP binding domain EP13_17215 PF14492 Elongation Factor G, domain II EP13_17215 PF00679 Elongation factor G C-terminus EP13_17215 PF03764 Elongation factor G, domain IV EP13_17220 PF00177 Ribosomal protein S7p/S5e EP13_17225 PF00164 Ribosomal protein S12/S23 EP13_17230 PF00623 RNA polymerase Rpb1, domain 2 EP13_17230 PF04983 RNA polymerase Rpb1, domain 3 EP13_17230 PF05000 RNA polymerase Rpb1, domain 4 EP13_17230 PF04998 RNA polymerase Rpb1, domain 5 EP13_17230 PF04997 RNA polymerase Rpb1, domain 1 EP13_17235 PF04560 RNA polymerase Rpb2, domain 7 EP13_17235 PF04563 RNA polymerase beta subunit EP13_17235 PF04561 RNA polymerase Rpb2, domain 2 EP13_17235 PF04565 RNA polymerase Rpb2, domain 3 EP13_17235 PF10385 RNA polymerase beta subunit external 1 domain EP13_17235 PF00562 RNA polymerase Rpb2, domain 6 EP13_17240 PF00542 Ribosomal protein L7/L12 C-terminal domain EP13_17240 PF16320 Ribosomal protein L7/L12 dimerisation domain EP13_17245 PF00466 Ribosomal protein L10 EP13_17250 PF00687 Ribosomal protein L1p/L10e family EP13_17255 PF00298 Ribosomal protein L11, RNA binding domain EP13_17255 PF03946 Ribosomal protein L11, N-terminal domain EP13_17270 PF02357 Transcription termination factor nusG EP13_17270 PF00467 KOW motif EP13_17275 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EP13_17285 PF00664 ABC transporter transmembrane region EP13_17285 PF00005 ABC transporter EP13_17290 PF08668 HDOD domain EP13_17290 PF00563 EAL domain EP13_17295 PF00080 Copper/zinc superoxide dismutase (SODC) EP13_17300 PF03737 Aldolase/RraA EP13_17305 PF05649 Peptidase family M13 EP13_17305 PF01431 Peptidase family M13 EP13_17315 PF00271 Helicase conserved C-terminal domain EP13_17315 PF00270 DEAD/DEAH box helicase EP13_17315 PF03880 DbpA RNA binding domain EP13_17320 PF01979 Amidohydrolase family EP13_17330 PF08212 Lipocalin-like domain EP13_17335 PF00248 Aldo/keto reductase family EP13_17340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP13_17345 PF07690 Major Facilitator Superfamily EP13_17355 PF01227 GTP cyclohydrolase I EP13_17365 PF04371 Porphyromonas-type peptidyl-arginine deiminase EP13_17370 PF00795 Carbon-nitrogen hydrolase EP13_17380 PF17158 Membrane-associated sensor, integral membrane domain EP13_17380 PF00990 Diguanylate cyclase, GGDEF domain EP13_17420 PF00271 Helicase conserved C-terminal domain EP13_17420 PF08494 DEAD/H associated EP13_17420 PF00270 DEAD/DEAH box helicase EP13_17430 PF04679 ATP dependent DNA ligase C terminal region EP13_17430 PF01068 ATP dependent DNA ligase domain EP13_17430 PF04675 DNA ligase N terminus EP13_17435 PF00294 pfkB family carbohydrate kinase EP13_17445 PF00326 Prolyl oligopeptidase family EP13_17450 PF02798 Glutathione S-transferase, N-terminal domain EP13_17450 PF00043 Glutathione S-transferase, C-terminal domain EP13_17470 PF00171 Aldehyde dehydrogenase family EP13_17475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP13_17475 PF00205 Thiamine pyrophosphate enzyme, central domain EP13_17475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP13_17485 PF00762 Ferrochelatase EP13_17490 PF03806 AbgT putative transporter family EP13_17495 PF01145 SPFH domain / Band 7 family EP13_17500 PF12221 Bacterial membrane protein N terminal EP13_17500 PF01145 SPFH domain / Band 7 family EP13_17505 PF13167 GTP-binding GTPase N-terminal EP13_17505 PF01926 50S ribosome-binding GTPase EP13_17505 PF16360 GTP-binding GTPase Middle Region EP13_17510 PF17209 Hfq protein EP13_17520 PF01119 DNA mismatch repair protein, C-terminal domain EP13_17520 PF08676 MutL C terminal dimerisation domain EP13_17525 PF01520 N-acetylmuramoyl-L-alanine amidase EP13_17530 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EP13_17535 PF03853 YjeF-related protein N-terminus EP13_17535 PF01256 Carbohydrate kinase EP13_17540 PF08331 Domain of unknown function (DUF1730) EP13_17550 PF01208 Uroporphyrinogen decarboxylase (URO-D) EP13_17560 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ EP13_17565 PF01475 Ferric uptake regulator family EP13_17575 PF01894 Uncharacterised protein family UPF0047 EP13_17580 PF00691 OmpA family EP13_17580 PF05736 OprF membrane domain EP13_17585 PF03796 DnaB-like helicase C terminal domain EP13_17585 PF00772 DnaB-like helicase N terminal domain EP13_17610 PF03473 MOSC domain EP13_17610 PF03475 3-alpha domain EP13_17615 PF03948 Ribosomal protein L9, C-terminal domain EP13_17615 PF01281 Ribosomal protein L9, N-terminal domain EP13_17620 PF01084 Ribosomal protein S18 EP13_17625 PF01250 Ribosomal protein S6 EP13_17630 PF00989 PAS fold EP13_17630 PF18698 Histidine kinase sensor domain EP13_17630 PF00512 His Kinase A (phospho-acceptor) domain EP13_17630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_17630 PF00672 HAMP domain EP13_17640 PF08447 PAS fold EP13_17640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_17645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_17645 PF00512 His Kinase A (phospho-acceptor) domain EP13_17650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP13_17650 PF17200 Single Cache domain 2 EP13_17650 PF00672 HAMP domain EP13_17655 PF00356 Bacterial regulatory proteins, lacI family EP13_17665 PF00232 Glycosyl hydrolase family 1 EP13_17675 PF00722 Glycosyl hydrolases family 16 EP13_17685 PF09278 MerR, DNA binding EP13_17685 PF00376 MerR family regulatory protein EP13_17700 PF00005 ABC transporter EP13_17720 PF00593 TonB dependent receptor EP13_17720 PF07715 TonB-dependent Receptor Plug Domain EP13_17725 PF00933 Glycosyl hydrolase family 3 N terminal domain EP13_17725 PF01915 Glycosyl hydrolase family 3 C-terminal domain EP13_17725 PF14310 Fibronectin type III-like domain EP13_17730 PF07690 Major Facilitator Superfamily EP13_17735 PF16916 Dimerisation domain of Zinc Transporter EP13_17735 PF01545 Cation efflux family EP13_17740 PF08448 PAS fold EP13_17740 PF00990 Diguanylate cyclase, GGDEF domain EP13_17755 PF08173 Membrane bound YbgT-like protein EP13_17760 PF02322 Cytochrome bd terminal oxidase subunit II EP13_17765 PF01654 Cytochrome bd terminal oxidase subunit I EP13_17775 PF02954 Bacterial regulatory protein, Fis family EP13_17775 PF00072 Response regulator receiver domain EP13_17775 PF00158 Sigma-54 interaction domain EP13_17860 PF07690 Major Facilitator Superfamily EP13_17870 PF05532 CsbD-like EP13_17875 PF00196 Bacterial regulatory proteins, luxR family EP13_17885 PF07715 TonB-dependent Receptor Plug Domain EP13_17885 PF00593 TonB dependent receptor EP13_17890 PF13181 Tetratricopeptide repeat EP13_17900 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP13_17900 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP13_17900 PF00205 Thiamine pyrophosphate enzyme, central domain EP13_17915 PF00171 Aldehyde dehydrogenase family EP13_17930 PF00111 2Fe-2S iron-sulfur cluster binding domain EP13_17935 PF00155 Aminotransferase class I and II EP13_17940 PF00171 Aldehyde dehydrogenase family EP13_17945 PF01546 Peptidase family M20/M25/M40 EP13_17945 PF07687 Peptidase dimerisation domain EP13_17955 PF03466 LysR substrate binding domain EP13_17955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_17970 PF04542 Sigma-70 region 2 EP13_17970 PF08281 Sigma-70, region 4 EP13_17995 PF00472 RF-1 domain EP13_18000 PF00561 alpha/beta hydrolase fold EP13_18000 PF08386 TAP-like protein EP13_18020 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP13_18025 PF00593 TonB dependent receptor EP13_18025 PF07715 TonB-dependent Receptor Plug Domain EP13_18035 PF01048 Phosphorylase superfamily EP13_18040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_18040 PF03466 LysR substrate binding domain EP13_18045 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) EP13_18050 PF00107 Zinc-binding dehydrogenase EP13_18050 PF16884 N-terminal domain of oxidoreductase EP13_18055 PF00990 Diguanylate cyclase, GGDEF domain EP13_18055 PF00072 Response regulator receiver domain EP13_18060 PF00072 Response regulator receiver domain EP13_18060 PF09308 LuxQ, periplasmic EP13_18060 PF00512 His Kinase A (phospho-acceptor) domain EP13_18060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_18070 PF00296 Luciferase-like monooxygenase EP13_18080 PF01063 Amino-transferase class IV EP13_18085 PF07715 TonB-dependent Receptor Plug Domain EP13_18085 PF00593 TonB dependent receptor EP13_18090 PF00474 Sodium:solute symporter family EP13_18110 PF00248 Aldo/keto reductase family EP13_18115 PF02668 Taurine catabolism dioxygenase TauD, TfdA family EP13_18120 PF03601 Conserved hypothetical protein 698 EP13_18140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_18140 PF03466 LysR substrate binding domain EP13_18190 PF01380 SIS domain EP13_18195 PF08220 DeoR-like helix-turn-helix domain EP13_18195 PF00455 DeoR C terminal sensor domain EP13_18200 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EP13_18200 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EP13_18205 PF12804 MobA-like NTP transferase domain EP13_18205 PF14602 Hexapeptide repeat of succinyl-transferase EP13_18205 PF00132 Bacterial transferase hexapeptide (six repeats) EP13_18215 PF00892 EamA-like transporter family EP13_18220 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EP13_18220 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EP13_18225 PF12833 Helix-turn-helix domain EP13_18230 PF00144 Beta-lactamase EP13_18235 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EP13_18235 PF17810 Arginine decarboxylase helical bundle domain EP13_18235 PF17944 Arginine decarboxylase C-terminal helical extension EP13_18245 PF02233 NAD(P) transhydrogenase beta subunit EP13_18250 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch EP13_18255 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EP13_18255 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EP13_18275 PF00544 Pectate lyase EP13_18290 PF03422 Carbohydrate binding module (family 6) EP13_18290 PF04616 Glycosyl hydrolases family 43 EP13_18300 PF03626 Prokaryotic Cytochrome C oxidase subunit IV EP13_18305 PF00510 Cytochrome c oxidase subunit III EP13_18310 PF00115 Cytochrome C and Quinol oxidase polypeptide I EP13_18315 PF06481 COX Aromatic Rich Motif EP13_18315 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EP13_18325 PF00355 Rieske [2Fe-2S] domain EP13_18325 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP13_18330 PF00175 Oxidoreductase NAD-binding domain EP13_18330 PF00111 2Fe-2S iron-sulfur cluster binding domain EP13_18365 PF00857 Isochorismatase family EP13_18370 PF00296 Luciferase-like monooxygenase EP13_18380 PF03069 Acetamidase/Formamidase family EP13_18385 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase EP13_18395 PF02668 Taurine catabolism dioxygenase TauD, TfdA family EP13_18405 PF00118 TCP-1/cpn60 chaperonin family EP13_18410 PF00166 Chaperonin 10 Kd subunit EP13_18420 PF03091 CutA1 divalent ion tolerance protein EP13_18425 PF11412 Disulphide bond corrector protein DsbC EP13_18425 PF02683 Cytochrome C biogenesis protein transmembrane region EP13_18430 PF01220 Dehydroquinase class II EP13_18435 PF00364 Biotin-requiring enzyme EP13_18440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP13_18440 PF00289 Biotin carboxylase, N-terminal domain EP13_18440 PF02785 Biotin carboxylase C-terminal domain EP13_18475 PF01355 High potential iron-sulfur protein EP13_18480 PF01425 Amidase EP13_18495 PF01207 Dihydrouridine synthase (Dus) EP13_18500 PF02954 Bacterial regulatory protein, Fis family EP13_18505 PF01808 AICARFT/IMPCHase bienzyme EP13_18505 PF02142 MGS-like domain EP13_18515 PF02844 Phosphoribosylglycinamide synthetase, N domain EP13_18515 PF02843 Phosphoribosylglycinamide synthetase, C domain EP13_18515 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EP13_18520 PF00331 Glycosyl hydrolase family 10 EP13_18520 PF02018 Carbohydrate binding domain EP13_18520 PF00395 S-layer homology domain EP13_18520 PF06452 Carbohydrate family 9 binding domain-like EP13_18525 PF00027 Cyclic nucleotide-binding domain EP13_18525 PF00520 Ion transport protein EP13_18535 PF00485 Phosphoribulokinase / Uridine kinase family EP13_18545 PF00072 Response regulator receiver domain EP13_18545 PF00486 Transcriptional regulatory protein, C terminal EP13_18550 PF00672 HAMP domain EP13_18550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP13_18550 PF00512 His Kinase A (phospho-acceptor) domain EP13_18565 PF01430 Hsp33 protein EP13_18570 PF01479 S4 domain EP13_18575 PF11356 Type II secretion system protein C EP13_18580 PF03958 Bacterial type II/III secretion system short domain EP13_18580 PF00263 Bacterial type II and III secretion system protein EP13_18585 PF00437 Type II/IV secretion system protein EP13_18590 PF00482 Type II secretion system (T2SS), protein F EP13_18595 PF08334 Type II secretion system (T2SS), protein G EP13_18595 PF07963 Prokaryotic N-terminal methylation motif EP13_18600 PF12019 Type II transport protein GspH EP13_18600 PF07963 Prokaryotic N-terminal methylation motif EP13_18605 PF02501 Type II secretion system (T2SS), protein I EP13_18605 PF07963 Prokaryotic N-terminal methylation motif EP13_18610 PF07963 Prokaryotic N-terminal methylation motif EP13_18610 PF11612 Type II secretion system (T2SS), protein J EP13_18615 PF03934 Type II secretion system (T2SS), protein K EP13_18620 PF12693 GspL periplasmic domain EP13_18620 PF05134 Type II secretion system (T2SS), protein L EP13_18625 PF04612 Type II secretion system (T2SS), protein M EP13_18640 PF00171 Aldehyde dehydrogenase family EP13_18645 PF01931 Protein of unknown function DUF84 EP13_18650 PF13419 Haloacid dehalogenase-like hydrolase EP13_18655 PF00293 NUDIX domain EP13_18660 PF00459 Inositol monophosphatase family EP13_18670 PF00535 Glycosyl transferase family 2 EP13_18675 PF04349 Periplasmic glucan biosynthesis protein, MdoG EP13_18685 PF06794 Uncharacterised protein family (UPF0270) EP13_18690 PF00561 alpha/beta hydrolase fold EP13_18700 PF12848 ABC transporter EP13_18700 PF00005 ABC transporter EP13_18715 PF04102 SlyX EP13_18725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP13_18725 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EP13_18735 PF01272 Transcription elongation factor, GreA/GreB, C-term EP13_18735 PF03449 Transcription elongation factor, N-terminal EP13_18740 PF09371 Tex-like protein N-terminal domain EP13_18740 PF00575 S1 RNA binding domain EP13_18740 PF17674 HHH domain EP13_18740 PF16921 Tex protein YqgF-like domain EP13_18755 PF00561 alpha/beta hydrolase fold EP13_18760 PF00156 Phosphoribosyl transferase domain EP13_18770 PF01106 NifU-like domain EP13_18770 PF01521 Iron-sulphur cluster biosynthesis EP13_18780 PF01177 Asp/Glu/Hydantoin racemase EP13_18785 PF13649 Methyltransferase domain EP13_18795 PF01554 MatE EP13_18810 PF02630 SCO1/SenC EP13_18815 PF01040 UbiA prenyltransferase family EP13_18840 PF00510 Cytochrome c oxidase subunit III EP13_18850 PF00115 Cytochrome C and Quinol oxidase polypeptide I EP13_18855 PF02790 Cytochrome C oxidase subunit II, transmembrane domain EP13_18855 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EP13_18860 PF00717 Peptidase S24-like EP13_18860 PF01726 LexA DNA binding domain EP13_18865 PF00593 TonB dependent receptor EP13_18865 PF07715 TonB-dependent Receptor Plug Domain EP13_18875 PF01553 Acyltransferase EP13_18880 PF00291 Pyridoxal-phosphate dependent enzyme EP13_18880 PF00585 C-terminal regulatory domain of Threonine dehydratase EP13_18885 PF00920 Dehydratase family EP13_18890 PF03458 UPF0126 domain EP13_18895 PF01078 Magnesium chelatase, subunit ChlI EP13_18895 PF13335 Magnesium chelatase, subunit ChlI C-terminal EP13_18900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP13_18900 PF03466 LysR substrate binding domain EP13_18905 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain EP13_18905 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain EP13_18910 PF07690 Major Facilitator Superfamily EP13_18915 PF00326 Prolyl oligopeptidase family EP13_18920 PF01103 Surface antigen EP13_18920 PF07244 Surface antigen variable number repeat EP13_18920 PF17243 POTRA domain TamA domain 1 EP13_18945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP13_18945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP13_18955 PF00696 Amino acid kinase family EP13_18955 PF01472 PUA domain EP13_18975 PF03109 ABC1 family EP13_18995 PF01979 Amidohydrolase family EP13_19020 PF01206 Sulfurtransferase TusA EP13_19025 PF00156 Phosphoribosyl transferase domain EP13_19030 PF01138 3' exoribonuclease family, domain 1 EP13_19030 PF03725 3' exoribonuclease family, domain 2 EP13_19035 PF08340 Domain of unknown function (DUF1732) EP13_19035 PF03755 YicC-like family, N-terminal region EP13_19050 PF13657 HipA N-terminal domain EP13_19050 PF07804 HipA-like C-terminal domain EP13_19055 PF04820 Tryptophan halogenase EP13_19070 PF00232 Glycosyl hydrolase family 1 EP13_19080 PF00356 Bacterial regulatory proteins, lacI family EP13_19090 PF00691 OmpA family EP13_19095 PF01966 HD domain EP13_19095 PF11871 Domain of unknown function (DUF3391) EP13_19110 PF00043 Glutathione S-transferase, C-terminal domain EP13_19110 PF02798 Glutathione S-transferase, N-terminal domain EP13_19125 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain EP13_19125 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EP13_19130 PF02874 ATP synthase alpha/beta family, beta-barrel domain EP13_19130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP13_19135 PF00231 ATP synthase EP13_19140 PF00306 ATP synthase alpha/beta chain, C terminal domain EP13_19140 PF02874 ATP synthase alpha/beta family, beta-barrel domain EP13_19140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP13_19150 PF00430 ATP synthase B/B' CF(0) EP13_19155 PF00137 ATP synthase subunit C EP13_19160 PF00119 ATP synthase A chain EP13_19170 PF17762 HTH domain found in ParB protein EP13_19170 PF02195 ParB-like nuclease domain EP13_19175 PF13614 AAA domain EP13_19180 PF02527 rRNA small subunit methyltransferase G EP13_19185 PF13932 GidA associated domain EP13_19185 PF01134 Glucose inhibited division protein A EP13_19200 PF00258 Flavodoxin EP13_19205 PF01926 50S ribosome-binding GTPase EP13_19205 PF10396 GTP-binding protein TrmE N-terminus EP13_19205 PF12631 MnmE helical domain EP13_19210 PF04461 Protein of unknown function (DUF520) EP13_19215 PF14849 YidC periplasmic domain EP13_19215 PF02096 60Kd inner membrane protein EP13_19220 PF01809 Putative membrane protein insertion efficiency factor