MASE_00005 SM00382 ATPases associated with a variety of cellular activities MASE_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain MASE_00010 SM00480 DNA polymerase III beta subunit MASE_00020 SM00387 Histidine kinase-like ATPases MASE_00020 SM00433 TopoisomeraseII MASE_00040 SM00836 DALR anticodon binding domain MASE_00080 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs MASE_00080 SM00474 3'-5' exonuclease MASE_00080 SM00475 5'-3' exonuclease MASE_00080 SM00482 DNA polymerase A domain MASE_00115 SM00257 Lysin motif MASE_00185 SM00481 DNA polymerase alpha chain like domain MASE_00270 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain MASE_00270 SM01232 MASE_00270 MASE_00295 SM00052 Putative diguanylate phosphodiesterase MASE_00295 SM00267 diguanylate cyclase MASE_00305 SM00829 Enoylreductase MASE_00310 SM00450 Rhodanese Homology Domain MASE_00345 SM00052 Putative diguanylate phosphodiesterase MASE_00345 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MASE_00345 SM00267 diguanylate cyclase MASE_00425 SM00849 Metallo-beta-lactamase superfamily MASE_00445 SM00876 Biotin and Thiamin Synthesis associated domain MASE_00495 SM00267 diguanylate cyclase MASE_00505 SM00072 Guanylate kinase homologues. MASE_00510 SM01409 MASE_00510 MASE_00515 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MASE_00515 SM00954 Region found in RelA / SpoT proteins MASE_00565 SM00382 ATPases associated with a variety of cellular activities MASE_00590 SM00052 Putative diguanylate phosphodiesterase MASE_00590 SM01034 Sensors of blue-light using FAD MASE_00595 SM00267 diguanylate cyclase MASE_00660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_00680 SM00052 Putative diguanylate phosphodiesterase MASE_00680 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_00680 SM00267 diguanylate cyclase MASE_00695 SM00341 Helicase and RNase D C-terminal MASE_00695 SM00487 DEAD-like helicases superfamily MASE_00695 SM00490 helicase superfamily c-terminal domain MASE_00695 SM00956 MASE_00695 MASE_00705 SM00924 MgtE intracellular N domain MASE_00730 SM00971 Serine acetyltransferase, N-terminal MASE_00735 SM00267 diguanylate cyclase MASE_00775 SM00014 Acid phosphatase homologues MASE_00820 SM01130 MASE_00820 MASE_00825 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. MASE_00835 SM00347 helix_turn_helix multiple antibiotic resistance protein MASE_00885 SM00354 helix_turn _helix lactose operon repressor MASE_00945 SM00420 helix_turn_helix, Deoxyribose operon repressor MASE_00945 SM01134 MASE_00945 MASE_00985 SM00965 Secretin and TonB N terminus short domain MASE_00995 SM00028 Tetratricopeptide repeats MASE_01000 SM00382 ATPases associated with a variety of cellular activities MASE_01070 SM00316 Ribosomal protein S1-like RNA-binding domain MASE_01105 SM00342 helix_turn_helix, arabinose operon control protein MASE_01110 SM01038 Beta galactosidase small chain MASE_01115 SM00448 cheY-homologous receiver domain MASE_01115 SM00862 Transcriptional regulatory protein, C terminal MASE_01120 SM00387 Histidine kinase-like ATPases MASE_01145 SM00478 endonuclease III MASE_01145 SM00525 MASE_01145 MASE_01165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_01170 SM00448 cheY-homologous receiver domain MASE_01175 SM00073 Histidine Phosphotransfer domain MASE_01175 SM00260 Two component signalling adaptor domain MASE_01175 SM00387 Histidine kinase-like ATPases MASE_01175 SM01231 MASE_01175 MASE_01180 SM00260 Two component signalling adaptor domain MASE_01185 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_01185 SM00091 PAS domain MASE_01185 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_01190 SM00138 Methyltransferase, chemotaxis proteins MASE_01200 SM00448 cheY-homologous receiver domain MASE_01205 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_01210 SM00448 cheY-homologous receiver domain MASE_01215 SM00073 Histidine Phosphotransfer domain MASE_01215 SM00260 Two component signalling adaptor domain MASE_01215 SM00387 Histidine kinase-like ATPases MASE_01215 SM01231 MASE_01215 MASE_01220 SM00260 Two component signalling adaptor domain MASE_01225 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_01225 SM00091 PAS domain MASE_01225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_01225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_01230 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_01230 SM00091 PAS domain MASE_01230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_01230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_01235 SM00138 Methyltransferase, chemotaxis proteins MASE_01245 SM00448 cheY-homologous receiver domain MASE_01265 SM00354 helix_turn _helix lactose operon repressor MASE_01280 SM00267 diguanylate cyclase MASE_01320 SM00354 helix_turn _helix lactose operon repressor MASE_01370 SM00855 Phosphoglycerate mutase family MASE_01385 SM00671 Sel1-like repeats. MASE_01390 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MASE_01390 SM00382 ATPases associated with a variety of cellular activities MASE_01395 SM01403 MASE_01395 MASE_01415 SM01382 MASE_01415 MASE_01415 SM01383 MASE_01415 MASE_01430 SM00322 K homology RNA-binding domain MASE_01475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_01475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_01510 SM00487 DEAD-like helicases superfamily MASE_01510 SM00490 helicase superfamily c-terminal domain MASE_01510 SM00847 Helicase associated domain (HA2) Add an annotation MASE_01550 SM00342 helix_turn_helix, arabinose operon control protein MASE_01560 SM00938 Nitrogen regulatory protein P-II MASE_01580 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain MASE_01615 SM00073 Histidine Phosphotransfer domain MASE_01615 SM00387 Histidine kinase-like ATPases MASE_01615 SM00388 His Kinase A (phosphoacceptor) domain MASE_01615 SM00448 cheY-homologous receiver domain MASE_01620 SM00434 DNA Topoisomerase IV MASE_01630 SM00052 Putative diguanylate phosphodiesterase MASE_01630 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_01630 SM00267 diguanylate cyclase MASE_01635 SM01150 MASE_01635 MASE_01710 SM00965 Secretin and TonB N terminus short domain MASE_01730 SM00842 Cell division protein FtsA MASE_01740 SM00919 Malic enzyme, NAD binding domain MASE_01740 SM01274 MASE_01740 MASE_01760 SM01060 MASE_01760 MASE_01785 SM00052 Putative diguanylate phosphodiesterase MASE_01820 SM00859 Semialdehyde dehydrogenase, NAD binding domain MASE_01825 SM00851 MGS-like domain MASE_01850 SM00448 cheY-homologous receiver domain MASE_01850 SM00862 Transcriptional regulatory protein, C terminal MASE_01855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_01855 SM00387 Histidine kinase-like ATPases MASE_01855 SM00388 His Kinase A (phosphoacceptor) domain MASE_01875 SM00382 ATPases associated with a variety of cellular activities MASE_01905 SM00450 Rhodanese Homology Domain MASE_01945 SM00479 MASE_01945 MASE_02015 SM00267 diguanylate cyclase MASE_02020 SM01004 Delta-aminolevulinic acid dehydratase MASE_02045 SM00357 Cold shock protein domain MASE_02045 SM00382 ATPases associated with a variety of cellular activities MASE_02045 SM00959 Rho termination factor, N-terminal domain MASE_02055 SM00387 Histidine kinase-like ATPases MASE_02055 SM00388 His Kinase A (phosphoacceptor) domain MASE_02055 SM00448 cheY-homologous receiver domain MASE_02065 SM01001 AIR carboxylase MASE_02120 SM00788 Adenylosuccinate synthetase MASE_02175 SM01005 Alanine racemase, C-terminal domain MASE_02205 SM00062 Bacterial periplasmic substrate-binding proteins MASE_02385 SM00257 Lysin motif MASE_02425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_02425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_02425 SM01049 MASE_02425 MASE_02430 SM00344 helix_turn_helix ASNC type MASE_02435 SM00829 Enoylreductase MASE_02470 SM00448 cheY-homologous receiver domain MASE_02470 SM00862 Transcriptional regulatory protein, C terminal MASE_02475 SM00388 His Kinase A (phosphoacceptor) domain MASE_02480 SM00287 Bacterial SH3 domain homologues MASE_02485 SM01118 MASE_02485 MASE_02495 SM00927 DNA mismatch repair enzyme MutH MASE_02505 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MASE_02525 SM00448 cheY-homologous receiver domain MASE_02530 SM00267 diguanylate cyclase MASE_02535 SM00387 Histidine kinase-like ATPases MASE_02535 SM00388 His Kinase A (phosphoacceptor) domain MASE_02535 SM00448 cheY-homologous receiver domain MASE_02560 SM00487 DEAD-like helicases superfamily MASE_02560 SM00490 helicase superfamily c-terminal domain MASE_02565 SM00530 Helix-turn-helix XRE-family like proteins MASE_02575 SM00670 Large family of predicted nucleotide-binding domains MASE_02580 SM00345 helix_turn_helix gluconate operon transcriptional repressor MASE_02610 SM00487 DEAD-like helicases superfamily MASE_02610 SM00490 helicase superfamily c-terminal domain MASE_02615 SM00028 Tetratricopeptide repeats MASE_02655 SM00387 Histidine kinase-like ATPases MASE_02655 SM00433 TopoisomeraseII MASE_02690 SM00841 Elongation factor P, C-terminal MASE_02690 SM01185 MASE_02690 MASE_02740 SM00014 Acid phosphatase homologues MASE_02755 SM00530 Helix-turn-helix XRE-family like proteins MASE_02760 SM01012 MASE_02760 MASE_02790 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MASE_02810 SM00267 diguanylate cyclase MASE_02815 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_02815 SM00091 PAS domain MASE_02815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_02830 SM00382 ATPases associated with a variety of cellular activities MASE_02900 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MASE_02905 SM01007 Class II Aldolase and Adducin N-terminal domain MASE_02935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_02935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_02945 SM00400 zinc finger MASE_02945 SM00493 MASE_02945 MASE_02945 SM00766 DNA primase DnaG DnaB-binding MASE_02970 SM01207 MASE_02970 MASE_02975 SM00905 Dihydroneopterin aldolase MASE_03010 SM00530 Helix-turn-helix XRE-family like proteins MASE_03020 SM00387 Histidine kinase-like ATPases MASE_03025 SM00448 cheY-homologous receiver domain MASE_03025 SM00862 Transcriptional regulatory protein, C terminal MASE_03030 SM00387 Histidine kinase-like ATPases MASE_03030 SM00388 His Kinase A (phosphoacceptor) domain MASE_03040 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. MASE_03045 SM00710 Parallel beta-helix repeats MASE_03080 SM00028 Tetratricopeptide repeats MASE_03085 SM00448 cheY-homologous receiver domain MASE_03085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MASE_03120 SM00387 Histidine kinase-like ATPases MASE_03120 SM00388 His Kinase A (phosphoacceptor) domain MASE_03120 SM00448 cheY-homologous receiver domain MASE_03125 SM00028 Tetratricopeptide repeats MASE_03160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_03160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_03175 SM00650 Ribosomal RNA adenine dimethylases MASE_03195 SM00271 DnaJ molecular chaperone homology domain MASE_03245 SM00954 Region found in RelA / SpoT proteins MASE_03335 SM00862 Transcriptional regulatory protein, C terminal MASE_03340 SM00924 MgtE intracellular N domain MASE_03370 SM00382 ATPases associated with a variety of cellular activities MASE_03400 SM00382 ATPases associated with a variety of cellular activities MASE_03435 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MASE_03440 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MASE_03495 SM00460 Transglutaminase/protease-like homologues MASE_03505 SM00460 Transglutaminase/protease-like homologues MASE_03545 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_03545 SM00091 PAS domain MASE_03545 SM00387 Histidine kinase-like ATPases MASE_03545 SM00388 His Kinase A (phosphoacceptor) domain MASE_03545 SM00448 cheY-homologous receiver domain MASE_03570 SM00861 Transketolase, pyrimidine binding domain MASE_03575 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MASE_03600 SM00448 cheY-homologous receiver domain MASE_03600 SM00862 Transcriptional regulatory protein, C terminal MASE_03605 SM00387 Histidine kinase-like ATPases MASE_03605 SM00388 His Kinase A (phosphoacceptor) domain MASE_03680 SM00382 ATPases associated with a variety of cellular activities MASE_03735 SM00347 helix_turn_helix multiple antibiotic resistance protein MASE_03745 SM01263 MASE_03745 MASE_03765 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_03765 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_03800 SM00245 tail specific protease MASE_03820 SM00448 cheY-homologous receiver domain MASE_03820 SM00862 Transcriptional regulatory protein, C terminal MASE_03825 SM00387 Histidine kinase-like ATPases MASE_03825 SM00388 His Kinase A (phosphoacceptor) domain MASE_03845 SM00345 helix_turn_helix gluconate operon transcriptional repressor MASE_03845 SM00866 MASE_03845 MASE_03885 SM00656 MASE_03885 MASE_03885 SM00710 Parallel beta-helix repeats MASE_03950 SM00487 DEAD-like helicases superfamily MASE_03970 SM00237 Domains in Na-Ca exchangers and integrin-beta4 MASE_04000 SM00850 LytTr DNA-binding domain MASE_04015 SM00448 cheY-homologous receiver domain MASE_04020 SM00091 PAS domain MASE_04040 SM00729 Elongator protein 3, MiaB family, Radical SAM MASE_04050 SM00487 DEAD-like helicases superfamily MASE_04050 SM00490 helicase superfamily c-terminal domain MASE_04060 SM00320 WD40 repeats MASE_04070 SM00382 ATPases associated with a variety of cellular activities MASE_04080 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MASE_04100 SM01329 MASE_04100 MASE_04105 SM00917 LeuA allosteric (dimerisation) domain MASE_04135 SM00710 Parallel beta-helix repeats MASE_04165 SM00345 helix_turn_helix gluconate operon transcriptional repressor MASE_04165 SM00895 MASE_04165 MASE_04190 SM01192 MASE_04190 MASE_04190 SM01193 MASE_04190 MASE_04200 SM00533 DNA-binding domain of DNA mismatch repair MUTS family MASE_04200 SM00534 ATPase domain of DNA mismatch repair MUTS family MASE_04210 SM00382 ATPases associated with a variety of cellular activities MASE_04215 SM00382 ATPases associated with a variety of cellular activities MASE_04235 SM00382 ATPases associated with a variety of cellular activities MASE_04305 SM00382 ATPases associated with a variety of cellular activities MASE_04345 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MASE_04350 SM01329 MASE_04350 MASE_04370 SM00267 diguanylate cyclase MASE_04430 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MASE_04475 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MASE_04485 SM00935 Outer membrane protein (OmpH-like) MASE_04510 SM00481 DNA polymerase alpha chain like domain MASE_04525 SM00267 diguanylate cyclase MASE_04550 SM00062 Bacterial periplasmic substrate-binding proteins MASE_04555 SM01211 MASE_04555 MASE_04570 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins MASE_04585 SM00382 ATPases associated with a variety of cellular activities MASE_04595 SM00421 helix_turn_helix, Lux Regulon MASE_04600 SM00052 Putative diguanylate phosphodiesterase MASE_04630 SM00858 MASE_04630 MASE_04635 SM00260 Two component signalling adaptor domain MASE_04635 SM00448 cheY-homologous receiver domain MASE_04645 SM00138 Methyltransferase, chemotaxis proteins MASE_04690 SM00047 Lysozyme subfamily 2 MASE_04795 SM00858 MASE_04795 MASE_04820 SM00382 ATPases associated with a variety of cellular activities MASE_04825 SM00387 Histidine kinase-like ATPases MASE_04825 SM00388 His Kinase A (phosphoacceptor) domain MASE_04830 SM00382 ATPases associated with a variety of cellular activities MASE_04830 SM00448 cheY-homologous receiver domain MASE_04855 SM00382 ATPases associated with a variety of cellular activities MASE_04925 SM00382 ATPases associated with a variety of cellular activities MASE_04925 SM00962 SRP54-type protein, GTPase domain MASE_04940 SM00448 cheY-homologous receiver domain MASE_04960 SM00448 cheY-homologous receiver domain MASE_04970 SM00260 Two component signalling adaptor domain MASE_04975 SM00260 Two component signalling adaptor domain MASE_04995 SM01018 B12 binding domain MASE_05010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_05010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_05025 SM00947 Carbonic anhydrase MASE_05060 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MASE_05090 SM00382 ATPases associated with a variety of cellular activities MASE_05095 SM00382 ATPases associated with a variety of cellular activities MASE_05115 SM00382 ATPases associated with a variety of cellular activities MASE_05140 SM00091 PAS domain MASE_05140 SM00382 ATPases associated with a variety of cellular activities MASE_05155 SM00344 helix_turn_helix ASNC type MASE_05160 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MASE_05190 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. MASE_05210 SM00028 Tetratricopeptide repeats MASE_05245 SM00028 Tetratricopeptide repeats MASE_05320 SM00829 Enoylreductase MASE_05335 SM00347 helix_turn_helix multiple antibiotic resistance protein MASE_05340 SM00448 cheY-homologous receiver domain MASE_05340 SM00850 LytTr DNA-binding domain MASE_05360 SM00836 DALR anticodon binding domain MASE_05360 SM01016 Arginyl tRNA synthetase N terminal dom MASE_05370 SM00028 Tetratricopeptide repeats MASE_05380 SM00564 beta-propeller repeat MASE_05385 SM00421 helix_turn_helix, Lux Regulon MASE_05385 SM00448 cheY-homologous receiver domain MASE_05405 SM00267 diguanylate cyclase MASE_05460 SM00937 MASE_05460 MASE_05515 SM00463 Small MutS-related domain MASE_05545 SM00763 PrkA AAA domain MASE_05580 SM00965 Secretin and TonB N terminus short domain MASE_05595 SM00479 MASE_05595 MASE_05620 SM00357 Cold shock protein domain MASE_05635 SM00478 endonuclease III MASE_05645 SM00900 MASE_05645 MASE_05665 SM00487 DEAD-like helicases superfamily MASE_05665 SM00490 helicase superfamily c-terminal domain MASE_05745 SM00267 diguanylate cyclase MASE_05770 SM00028 Tetratricopeptide repeats MASE_05775 SM00327 von Willebrand factor (vWF) type A domain MASE_05815 SM00052 Putative diguanylate phosphodiesterase MASE_05815 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_05815 SM00267 diguanylate cyclase MASE_05825 SM00855 Phosphoglycerate mutase family MASE_05835 SM01091 Transporter associated domain MASE_05845 SM00382 ATPases associated with a variety of cellular activities MASE_05845 SM00962 SRP54-type protein, GTPase domain MASE_05845 SM00963 SRP54-type protein, helical bundle domain MASE_05895 SM00382 ATPases associated with a variety of cellular activities MASE_05945 SM00830 Chorismate mutase type II MASE_05970 SM00267 diguanylate cyclase MASE_05975 SM00830 Chorismate mutase type II MASE_05980 SM00448 cheY-homologous receiver domain MASE_05995 SM00331 Sigma factor PP2C-like phosphatases MASE_05995 SM00448 cheY-homologous receiver domain MASE_06015 SM00052 Putative diguanylate phosphodiesterase MASE_06015 SM00267 diguanylate cyclase MASE_06025 SM00387 Histidine kinase-like ATPases MASE_06025 SM00388 His Kinase A (phosphoacceptor) domain MASE_06035 SM00382 ATPases associated with a variety of cellular activities MASE_06035 SM00448 cheY-homologous receiver domain MASE_06040 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MASE_06065 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MASE_06070 SM00382 ATPases associated with a variety of cellular activities MASE_06140 SM00859 Semialdehyde dehydrogenase, NAD binding domain MASE_06150 SM00267 diguanylate cyclase MASE_06170 SM00116 Domain in cystathionine beta-synthase and other proteins. MASE_06210 SM00267 diguanylate cyclase MASE_06275 SM00729 Elongator protein 3, MiaB family, Radical SAM MASE_06275 SM00876 Biotin and Thiamin Synthesis associated domain MASE_06300 SM00226 Low molecular weight phosphatase family MASE_06310 SM00382 ATPases associated with a variety of cellular activities MASE_06320 SM00387 Histidine kinase-like ATPases MASE_06320 SM00388 His Kinase A (phosphoacceptor) domain MASE_06325 SM00448 cheY-homologous receiver domain MASE_06325 SM00862 Transcriptional regulatory protein, C terminal MASE_06350 SM00382 ATPases associated with a variety of cellular activities MASE_06355 SM00729 Elongator protein 3, MiaB family, Radical SAM MASE_06365 SM00028 Tetratricopeptide repeats MASE_06365 SM00448 cheY-homologous receiver domain MASE_06395 SM01321 MASE_06395 MASE_06405 SM00382 ATPases associated with a variety of cellular activities MASE_06420 SM00905 Dihydroneopterin aldolase MASE_06430 SM00387 Histidine kinase-like ATPases MASE_06435 SM00448 cheY-homologous receiver domain MASE_06435 SM00862 Transcriptional regulatory protein, C terminal MASE_06510 SM00363 S4 RNA-binding domain MASE_06520 SM01266 MASE_06520 MASE_06605 SM00421 helix_turn_helix, Lux Regulon MASE_06605 SM00448 cheY-homologous receiver domain MASE_06615 SM00387 Histidine kinase-like ATPases MASE_06615 SM00388 His Kinase A (phosphoacceptor) domain MASE_06615 SM00448 cheY-homologous receiver domain MASE_06620 SM00671 Sel1-like repeats. MASE_06635 SM00271 DnaJ molecular chaperone homology domain MASE_06655 SM00052 Putative diguanylate phosphodiesterase MASE_06655 SM00091 PAS domain MASE_06675 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain MASE_06680 SM00851 MGS-like domain MASE_06680 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MASE_06695 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_06745 SM00116 Domain in cystathionine beta-synthase and other proteins. MASE_06745 SM01091 Transporter associated domain MASE_06760 SM00729 Elongator protein 3, MiaB family, Radical SAM MASE_06815 SM00903 Flavin reductase like domain MASE_06850 SM00829 Enoylreductase MASE_06860 SM01400 MASE_06860 MASE_06880 SM00937 MASE_06880 MASE_06890 SM00448 cheY-homologous receiver domain MASE_06930 SM00838 Elongation factor G C-terminus MASE_06930 SM00889 Elongation factor G, domain IV MASE_06935 SM01116 MASE_06935 MASE_06955 SM00460 Transglutaminase/protease-like homologues MASE_06985 SM00052 Putative diguanylate phosphodiesterase MASE_06985 SM00267 diguanylate cyclase MASE_07055 SM00347 helix_turn_helix multiple antibiotic resistance protein MASE_07065 SM00052 Putative diguanylate phosphodiesterase MASE_07065 SM00091 PAS domain MASE_07065 SM00267 diguanylate cyclase MASE_07070 SM00052 Putative diguanylate phosphodiesterase MASE_07070 SM00267 diguanylate cyclase MASE_07115 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MASE_07135 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_07135 SM00091 PAS domain MASE_07135 SM00267 diguanylate cyclase MASE_07165 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MASE_07170 SM01092 CO dehydrogenase flavoprotein C-terminal domain MASE_07205 SM00052 Putative diguanylate phosphodiesterase MASE_07205 SM00091 PAS domain MASE_07205 SM00267 diguanylate cyclase MASE_07205 SM00448 cheY-homologous receiver domain MASE_07210 SM00267 diguanylate cyclase MASE_07210 SM00448 cheY-homologous receiver domain MASE_07215 SM00387 Histidine kinase-like ATPases MASE_07215 SM00388 His Kinase A (phosphoacceptor) domain MASE_07215 SM00448 cheY-homologous receiver domain MASE_07310 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MASE_07380 SM00052 Putative diguanylate phosphodiesterase MASE_07380 SM00267 diguanylate cyclase MASE_07475 SM00873 B3/4 domain MASE_07475 SM00874 tRNA synthetase B5 domain MASE_07475 SM00896 Ferredoxin-fold anticodon binding domain MASE_07480 SM00411 bacterial (prokaryotic) histone like domain MASE_07515 SM00487 DEAD-like helicases superfamily MASE_07515 SM00490 helicase superfamily c-terminal domain MASE_07515 SM00982 MASE_07515 MASE_07515 SM01058 CarD-like/TRCF domain MASE_07535 SM00387 Histidine kinase-like ATPases MASE_07540 SM00897 FIST N domain MASE_07540 SM01204 MASE_07540 MASE_07620 SM00878 Biotin carboxylase C-terminal domain MASE_07640 SM00422 helix_turn_helix, mercury resistance MASE_07660 SM00062 Bacterial periplasmic substrate-binding proteins MASE_07660 SM00267 diguanylate cyclase MASE_07670 SM00479 MASE_07670 MASE_07675 SM00387 Histidine kinase-like ATPases MASE_07675 SM00388 His Kinase A (phosphoacceptor) domain MASE_07675 SM00448 cheY-homologous receiver domain MASE_07685 SM00116 Domain in cystathionine beta-synthase and other proteins. MASE_07700 SM00267 diguanylate cyclase MASE_07705 SM00342 helix_turn_helix, arabinose operon control protein MASE_07715 SM00382 ATPases associated with a variety of cellular activities MASE_07715 SM00487 DEAD-like helicases superfamily MASE_07715 SM00490 helicase superfamily c-terminal domain MASE_07715 SM00847 Helicase associated domain (HA2) Add an annotation MASE_07730 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase MASE_07735 SM00829 Enoylreductase MASE_07745 SM00479 MASE_07745 MASE_07755 SM00052 Putative diguanylate phosphodiesterase MASE_07760 SM00382 ATPases associated with a variety of cellular activities MASE_07775 SM00634 Bacterial Ig-like domain (group 1) MASE_07785 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MASE_07785 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MASE_07785 SM00493 MASE_07785 MASE_07850 SM00448 cheY-homologous receiver domain MASE_07850 SM00862 Transcriptional regulatory protein, C terminal MASE_07855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_07855 SM00387 Histidine kinase-like ATPases MASE_07855 SM00388 His Kinase A (phosphoacceptor) domain MASE_07860 SM00587 ZnF_C4 abd HLH domain containing kinases domain MASE_07865 SM00316 Ribosomal protein S1-like RNA-binding domain MASE_07870 SM00363 S4 RNA-binding domain MASE_07905 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. MASE_07910 SM00822 MASE_07910 MASE_07920 SM00825 Beta-ketoacyl synthase MASE_07960 SM00267 diguanylate cyclase MASE_08070 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain MASE_08105 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_08105 SM00091 PAS domain MASE_08105 SM00387 Histidine kinase-like ATPases MASE_08105 SM00388 His Kinase A (phosphoacceptor) domain MASE_08105 SM00448 cheY-homologous receiver domain MASE_08110 SM00448 cheY-homologous receiver domain MASE_08110 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MASE_08120 SM00316 Ribosomal protein S1-like RNA-binding domain MASE_08140 SM01387 MASE_08140 MASE_08145 SM00091 PAS domain MASE_08145 SM00267 diguanylate cyclase MASE_08150 SM00363 S4 RNA-binding domain MASE_08165 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. MASE_08170 SM00448 cheY-homologous receiver domain MASE_08235 SM00729 Elongator protein 3, MiaB family, Radical SAM MASE_08275 SM00382 ATPases associated with a variety of cellular activities MASE_08290 SM00477 DNA/RNA non-specific endonuclease MASE_08290 SM00892 DNA/RNA non-specific endonuclease MASE_08295 SM00829 Enoylreductase MASE_08340 SM00248 ankyrin repeats MASE_08370 SM00382 ATPases associated with a variety of cellular activities MASE_08400 SM00347 helix_turn_helix multiple antibiotic resistance protein MASE_08415 SM00028 Tetratricopeptide repeats MASE_08445 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MASE_08470 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. MASE_08475 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain MASE_08505 SM00357 Cold shock protein domain MASE_08515 SM00382 ATPases associated with a variety of cellular activities MASE_08515 SM01086 C-terminal, D2-small domain, of ClpB protein MASE_08520 SM00316 Ribosomal protein S1-like RNA-binding domain MASE_08545 SM00731 SprT homologues. MASE_08575 SM00870 MASE_08575 MASE_08580 SM00729 Elongator protein 3, MiaB family, Radical SAM MASE_08595 SM00936 Penicillin-binding protein 5, C-terminal domain MASE_08670 SM01103 MASE_08670 MASE_08680 SM00382 ATPases associated with a variety of cellular activities MASE_08705 SM00052 Putative diguanylate phosphodiesterase MASE_08705 SM00267 diguanylate cyclase MASE_08705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_08720 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MASE_08725 SM00046 Diacylglycerol kinase catalytic domain (presumed) MASE_08725 SM00195 Dual specificity phosphatase, catalytic domain MASE_08725 SM00404 Protein tyrosine phosphatase, catalytic domain motif MASE_08775 SM00507 HNH nucleases MASE_08780 SM00316 Ribosomal protein S1-like RNA-binding domain MASE_08780 SM00322 K homology RNA-binding domain MASE_08815 SM00953 MASE_08815 MASE_08855 SM00020 Trypsin-like serine protease MASE_08960 SM00028 Tetratricopeptide repeats MASE_08980 SM00771 ZipA, C-terminal domain (FtsZ-binding) MASE_08985 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MASE_08985 SM00292 breast cancer carboxy-terminal domain MASE_08985 SM00532 Ligase N family MASE_08995 SM00849 Metallo-beta-lactamase superfamily MASE_09000 SM00382 ATPases associated with a variety of cellular activities MASE_09030 SM00729 Elongator protein 3, MiaB family, Radical SAM MASE_09105 SM00861 Transketolase, pyrimidine binding domain MASE_09120 SM00881 CoA binding domain MASE_09160 SM00642 Alpha-amylase domain MASE_09165 SM00642 Alpha-amylase domain MASE_09175 SM00642 Alpha-amylase domain MASE_09180 SM00354 helix_turn _helix lactose operon repressor MASE_09265 SM00487 DEAD-like helicases superfamily MASE_09265 SM00490 helicase superfamily c-terminal domain MASE_09290 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_09290 SM00091 PAS domain MASE_09290 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_09295 SM00155 Phospholipase D. Active site motifs. MASE_09325 SM00448 cheY-homologous receiver domain MASE_09335 SM00387 Histidine kinase-like ATPases MASE_09340 SM00849 Metallo-beta-lactamase superfamily MASE_09345 SM00486 DNA polymerase type-B family MASE_09385 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MASE_09400 SM00387 Histidine kinase-like ATPases MASE_09405 SM00448 cheY-homologous receiver domain MASE_09405 SM00850 LytTr DNA-binding domain MASE_09425 SM00028 Tetratricopeptide repeats MASE_09425 SM00448 cheY-homologous receiver domain MASE_09435 SM00450 Rhodanese Homology Domain MASE_09440 SM00054 EF-hand, calcium binding motif MASE_09465 SM00487 DEAD-like helicases superfamily MASE_09465 SM00490 helicase superfamily c-terminal domain MASE_09470 SM00882 Coenzyme A transferase MASE_09475 SM00882 Coenzyme A transferase MASE_09490 SM00387 Histidine kinase-like ATPases MASE_09535 SM00861 Transketolase, pyrimidine binding domain MASE_09550 SM00220 Serine/Threonine protein kinases, catalytic domain MASE_09585 SM00945 ProQ/FINO family MASE_09590 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MASE_09590 SM00245 tail specific protease MASE_09645 SM00981 MASE_09645 MASE_09655 SM00382 ATPases associated with a variety of cellular activities MASE_09755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_09755 SM00388 His Kinase A (phosphoacceptor) domain MASE_09760 SM00448 cheY-homologous receiver domain MASE_09760 SM00862 Transcriptional regulatory protein, C terminal MASE_09865 SM00100 Cyclic nucleotide-monophosphate binding domain MASE_09865 SM00419 helix_turn_helix, cAMP Regulatory protein MASE_09910 SM00450 Rhodanese Homology Domain MASE_09920 SM01144 MASE_09920 MASE_09930 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MASE_09930 SM00465 GIY-YIG type nucleases (URI domain) MASE_09935 SM00421 helix_turn_helix, Lux Regulon MASE_09935 SM00448 cheY-homologous receiver domain MASE_10045 SM00382 ATPases associated with a variety of cellular activities MASE_10055 SM00843 MASE_10055 MASE_10060 SM00344 helix_turn_helix ASNC type MASE_10065 SM01002 Alanine dehydrogenase/PNT, C-terminal domain MASE_10065 SM01003 Alanine dehydrogenase/PNT, N-terminal domain MASE_10070 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family MASE_10075 SM00028 Tetratricopeptide repeats MASE_10090 SM00411 bacterial (prokaryotic) histone like domain MASE_10095 SM00316 Ribosomal protein S1-like RNA-binding domain MASE_10115 SM00434 DNA Topoisomerase IV MASE_10140 SM00822 MASE_10140 MASE_10160 SM00052 Putative diguanylate phosphodiesterase MASE_10160 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MASE_10160 SM00267 diguanylate cyclase MASE_10165 SM00267 diguanylate cyclase MASE_10185 SM01130 MASE_10185 MASE_10270 SM00421 helix_turn_helix, Lux Regulon MASE_10270 SM00448 cheY-homologous receiver domain MASE_10300 SM00642 Alpha-amylase domain MASE_10310 SM00852 Probable molybdopterin binding domain MASE_10330 SM00382 ATPases associated with a variety of cellular activities MASE_10470 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. MASE_10480 SM00563 Phosphate acyltransferases MASE_10525 SM00342 helix_turn_helix, arabinose operon control protein MASE_10565 SM00893 Electron transfer flavoprotein domain MASE_10570 SM00893 Electron transfer flavoprotein domain MASE_10580 SM00528 Domain in histone-like proteins of HNS family MASE_10600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_10600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_10615 SM00797 Allophanate hydrolase subunit 2 MASE_10620 SM00796 Allophanate hydrolase subunit 1 MASE_10685 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MASE_10690 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MASE_10720 SM00642 Alpha-amylase domain MASE_10725 SM00829 Enoylreductase MASE_10740 SM00855 Phosphoglycerate mutase family MASE_10765 SM00729 Elongator protein 3, MiaB family, Radical SAM MASE_10770 SM00382 ATPases associated with a variety of cellular activities MASE_10800 SM00852 Probable molybdopterin binding domain MASE_10885 SM00871 Bacterial transcription activator, effector binding domain MASE_10925 SM00345 helix_turn_helix gluconate operon transcriptional repressor MASE_10965 SM00052 Putative diguanylate phosphodiesterase MASE_10965 SM00267 diguanylate cyclase MASE_10970 SM00849 Metallo-beta-lactamase superfamily MASE_11005 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MASE_11025 SM00382 ATPases associated with a variety of cellular activities MASE_11025 SM00448 cheY-homologous receiver domain MASE_11035 SM00387 Histidine kinase-like ATPases MASE_11035 SM00388 His Kinase A (phosphoacceptor) domain MASE_11040 SM00448 cheY-homologous receiver domain MASE_11045 SM00387 Histidine kinase-like ATPases MASE_11045 SM00388 His Kinase A (phosphoacceptor) domain MASE_11045 SM00448 cheY-homologous receiver domain MASE_11120 SM00631 MASE_11120 MASE_11125 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MASE_11140 SM01350 MASE_11140 MASE_11145 SM00642 Alpha-amylase domain MASE_11150 SM00642 Alpha-amylase domain MASE_11160 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MASE_11225 SM00749 bacterial OsmY and nodulation domain MASE_11295 SM00354 helix_turn _helix lactose operon repressor MASE_11300 SM00858 MASE_11300 MASE_11365 SM00387 Histidine kinase-like ATPases MASE_11365 SM00388 His Kinase A (phosphoacceptor) domain MASE_11365 SM00448 cheY-homologous receiver domain MASE_11390 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_11390 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_11425 SM00052 Putative diguanylate phosphodiesterase MASE_11425 SM00267 diguanylate cyclase MASE_11435 SM01060 MASE_11435 MASE_11440 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MASE_11445 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MASE_11445 SM00387 Histidine kinase-like ATPases MASE_11460 SM00342 helix_turn_helix, arabinose operon control protein MASE_11480 SM00342 helix_turn_helix, arabinose operon control protein MASE_11515 SM00849 Metallo-beta-lactamase superfamily MASE_11540 SM00344 helix_turn_helix ASNC type MASE_11550 SM00840 MASE_11550 MASE_11570 SM00244 prohibitin homologues MASE_11590 SM00642 Alpha-amylase domain MASE_11600 SM00829 Enoylreductase MASE_11610 SM00829 Enoylreductase MASE_11625 SM00539 Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins. MASE_11685 SM00859 Semialdehyde dehydrogenase, NAD binding domain MASE_11695 SM01007 Class II Aldolase and Adducin N-terminal domain MASE_11700 SM00100 Cyclic nucleotide-monophosphate binding domain MASE_11700 SM00419 helix_turn_helix, cAMP Regulatory protein MASE_11715 SM00825 Beta-ketoacyl synthase MASE_11780 SM00422 helix_turn_helix, mercury resistance MASE_11795 SM00382 ATPases associated with a variety of cellular activities MASE_11805 SM00833 Cobalamin synthesis protein cobW C-terminal domain MASE_11810 SM00342 helix_turn_helix, arabinose operon control protein MASE_11830 SM00387 Histidine kinase-like ATPases MASE_11830 SM00388 His Kinase A (phosphoacceptor) domain MASE_11830 SM00448 cheY-homologous receiver domain MASE_11940 SM00345 helix_turn_helix gluconate operon transcriptional repressor MASE_11980 SM00341 Helicase and RNase D C-terminal MASE_11980 SM00474 3'-5' exonuclease MASE_12010 SM00487 DEAD-like helicases superfamily MASE_12010 SM00488 MASE_12010 MASE_12010 SM00491 MASE_12010 MASE_12050 SM00642 Alpha-amylase domain MASE_12080 SM00849 Metallo-beta-lactamase superfamily MASE_12180 SM00387 Histidine kinase-like ATPases MASE_12185 SM00493 MASE_12185 MASE_12210 SM00382 ATPases associated with a variety of cellular activities MASE_12235 SM00862 Transcriptional regulatory protein, C terminal MASE_12245 SM00091 PAS domain MASE_12245 SM00267 diguanylate cyclase MASE_12270 SM00028 Tetratricopeptide repeats MASE_12300 SM00382 ATPases associated with a variety of cellular activities MASE_12300 SM01086 C-terminal, D2-small domain, of ClpB protein MASE_12315 SM00363 S4 RNA-binding domain MASE_12445 SM00382 ATPases associated with a variety of cellular activities MASE_12455 SM00382 ATPases associated with a variety of cellular activities MASE_12490 SM00358 Double-stranded RNA binding motif MASE_12490 SM00535 Ribonuclease III family MASE_12500 SM00838 Elongation factor G C-terminus MASE_12555 SM00938 Nitrogen regulatory protein P-II MASE_12640 SM00904 Riboflavin kinase MASE_12685 SM00563 Phosphate acyltransferases MASE_12705 SM00411 bacterial (prokaryotic) histone like domain MASE_12710 SM00382 ATPases associated with a variety of cellular activities MASE_12710 SM00464 Found in ATP-dependent protease La (LON) MASE_12715 SM00382 ATPases associated with a variety of cellular activities MASE_12715 SM00994 ClpX C4-type zinc finger MASE_12715 SM01086 C-terminal, D2-small domain, of ClpB protein MASE_12770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_12780 SM00116 Domain in cystathionine beta-synthase and other proteins. MASE_12780 SM01240 MASE_12780 MASE_12805 SM00382 ATPases associated with a variety of cellular activities MASE_12810 SM00564 beta-propeller repeat MASE_12815 SM00028 Tetratricopeptide repeats MASE_12830 SM00530 Helix-turn-helix XRE-family like proteins MASE_12835 SM00028 Tetratricopeptide repeats MASE_12835 SM00257 Lysin motif MASE_12850 SM00562 MASE_12850 MASE_12880 SM00382 ATPases associated with a variety of cellular activities MASE_12930 SM00850 LytTr DNA-binding domain MASE_12945 SM01323 MASE_12945 MASE_13010 SM00382 ATPases associated with a variety of cellular activities MASE_13030 SM00098 Alkaline phosphatase homologues MASE_13035 SM00260 Two component signalling adaptor domain MASE_13035 SM00448 cheY-homologous receiver domain MASE_13100 SM00028 Tetratricopeptide repeats MASE_13315 SM00052 Putative diguanylate phosphodiesterase MASE_13315 SM00267 diguanylate cyclase MASE_13335 SM00354 helix_turn _helix lactose operon repressor MASE_13375 SM00967 RNA 2'-O ribose methyltransferase substrate binding MASE_13445 SM00422 helix_turn_helix, mercury resistance MASE_13550 SM01092 CO dehydrogenase flavoprotein C-terminal domain MASE_13555 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MASE_13575 SM00382 ATPases associated with a variety of cellular activities MASE_13625 SM00448 cheY-homologous receiver domain MASE_13625 SM00850 LytTr DNA-binding domain MASE_13630 SM00342 helix_turn_helix, arabinose operon control protein MASE_13645 SM00327 von Willebrand factor (vWF) type A domain MASE_13645 SM00609 Vault protein Inter-alpha-Trypsin domain MASE_13695 SM01322 MASE_13695 MASE_13750 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain MASE_13750 SM01232 MASE_13750 MASE_13765 SM01321 MASE_13765 MASE_13770 SM00487 DEAD-like helicases superfamily MASE_13770 SM00490 helicase superfamily c-terminal domain MASE_13785 SM00028 Tetratricopeptide repeats MASE_13785 SM00387 Histidine kinase-like ATPases MASE_13785 SM00388 His Kinase A (phosphoacceptor) domain MASE_13785 SM00448 cheY-homologous receiver domain MASE_13795 SM00387 Histidine kinase-like ATPases MASE_13795 SM00388 His Kinase A (phosphoacceptor) domain MASE_13795 SM00448 cheY-homologous receiver domain MASE_13820 SM00974 MASE_13820 MASE_13865 SM01081 Putative carbohydrate binding domain MASE_13875 SM00354 helix_turn _helix lactose operon repressor MASE_13920 SM01011 Aminopeptidase P, N-terminal domain MASE_13945 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MASE_13945 SM00387 Histidine kinase-like ATPases MASE_13945 SM00388 His Kinase A (phosphoacceptor) domain MASE_13945 SM00448 cheY-homologous receiver domain MASE_14030 SM00345 helix_turn_helix gluconate operon transcriptional repressor MASE_14030 SM00895 MASE_14030 MASE_14040 SM00644 MASE_14040 MASE_14090 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_14095 SM00448 cheY-homologous receiver domain MASE_14110 SM00073 Histidine Phosphotransfer domain MASE_14110 SM00260 Two component signalling adaptor domain MASE_14110 SM00387 Histidine kinase-like ATPases MASE_14110 SM01231 MASE_14110 MASE_14115 SM00448 cheY-homologous receiver domain MASE_14120 SM00138 Methyltransferase, chemotaxis proteins MASE_14130 SM00448 cheY-homologous receiver domain MASE_14135 SM00260 Two component signalling adaptor domain MASE_14140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_14150 SM00957 SecA DEAD-like domain MASE_14150 SM00958 SecA preprotein cross-linking domain MASE_14165 SM00864 Tubulin/FtsZ family, GTPase domain MASE_14165 SM00865 Tubulin/FtsZ family, C-terminal domain MASE_14170 SM00842 Cell division protein FtsA MASE_14295 SM00028 Tetratricopeptide repeats MASE_14295 SM00267 diguanylate cyclase MASE_14305 SM00382 ATPases associated with a variety of cellular activities MASE_14305 SM00448 cheY-homologous receiver domain MASE_14310 SM00387 Histidine kinase-like ATPases MASE_14345 SM00028 Tetratricopeptide repeats MASE_14345 SM00267 diguanylate cyclase MASE_14355 SM00382 ATPases associated with a variety of cellular activities MASE_14355 SM00448 cheY-homologous receiver domain MASE_14360 SM00387 Histidine kinase-like ATPases MASE_14400 SM00732 Likely ribonuclease with RNase H fold. MASE_14410 SM00382 ATPases associated with a variety of cellular activities MASE_14495 SM00360 RNA recognition motif MASE_14530 SM00986 Uracil DNA glycosylase superfamily MASE_14530 SM00987 UreE urease accessory protein, C-terminal domain MASE_14560 SM00829 Enoylreductase MASE_14570 SM00421 helix_turn_helix, Lux Regulon MASE_14570 SM00448 cheY-homologous receiver domain MASE_14590 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MASE_14595 SM00226 Low molecular weight phosphatase family MASE_14610 SM00448 cheY-homologous receiver domain MASE_14620 SM00448 cheY-homologous receiver domain MASE_14620 SM00862 Transcriptional regulatory protein, C terminal MASE_14625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_14625 SM00387 Histidine kinase-like ATPases MASE_14625 SM00388 His Kinase A (phosphoacceptor) domain MASE_14670 SM00342 helix_turn_helix, arabinose operon control protein MASE_14725 SM00749 bacterial OsmY and nodulation domain MASE_14750 SM00421 helix_turn_helix, Lux Regulon MASE_14750 SM00448 cheY-homologous receiver domain MASE_14770 SM00345 helix_turn_helix gluconate operon transcriptional repressor MASE_14770 SM00895 MASE_14770 MASE_14795 SM00267 diguanylate cyclase MASE_14795 SM00448 cheY-homologous receiver domain MASE_14815 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_14815 SM00091 PAS domain MASE_14815 SM00387 Histidine kinase-like ATPases MASE_14815 SM00388 His Kinase A (phosphoacceptor) domain MASE_14815 SM00448 cheY-homologous receiver domain MASE_14820 SM00287 Bacterial SH3 domain homologues MASE_14820 SM00644 MASE_14820 MASE_14865 SM00450 Rhodanese Homology Domain MASE_15040 SM00448 cheY-homologous receiver domain MASE_15050 SM01230 MASE_15050 MASE_15060 SM00091 PAS domain MASE_15060 SM00387 Histidine kinase-like ATPases MASE_15060 SM00388 His Kinase A (phosphoacceptor) domain MASE_15065 SM00382 ATPases associated with a variety of cellular activities MASE_15065 SM00448 cheY-homologous receiver domain MASE_15070 SM00073 Histidine Phosphotransfer domain MASE_15075 SM00563 Phosphate acyltransferases MASE_15090 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_15090 SM00091 PAS domain MASE_15090 SM00267 diguanylate cyclase MASE_15100 SM00244 prohibitin homologues MASE_15110 SM00387 Histidine kinase-like ATPases MASE_15110 SM00388 His Kinase A (phosphoacceptor) domain MASE_15110 SM00448 cheY-homologous receiver domain MASE_15110 SM01358 MASE_15110 MASE_15235 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MASE_15235 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_15235 SM00091 PAS domain MASE_15235 SM00387 Histidine kinase-like ATPases MASE_15235 SM00388 His Kinase A (phosphoacceptor) domain MASE_15235 SM00448 cheY-homologous receiver domain MASE_15290 SM00886 Stress responsive A/B Barrel Domain MASE_15360 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MASE_15380 SM00354 helix_turn _helix lactose operon repressor MASE_15440 SM00996 S-adenosyl-L-homocysteine hydrolase MASE_15440 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MASE_15445 SM00267 diguanylate cyclase MASE_15465 SM00564 beta-propeller repeat MASE_15470 SM00062 Bacterial periplasmic substrate-binding proteins MASE_15485 SM00382 ATPases associated with a variety of cellular activities MASE_15520 SM00729 Elongator protein 3, MiaB family, Radical SAM MASE_15545 SM00421 helix_turn_helix, Lux Regulon MASE_15545 SM00448 cheY-homologous receiver domain MASE_15550 SM00091 PAS domain MASE_15550 SM00387 Histidine kinase-like ATPases MASE_15550 SM00388 His Kinase A (phosphoacceptor) domain MASE_15550 SM00448 cheY-homologous receiver domain MASE_15555 SM00897 FIST N domain MASE_15555 SM01204 MASE_15555 MASE_15560 SM00900 MASE_15560 MASE_15570 SM00421 helix_turn_helix, Lux Regulon MASE_15570 SM00448 cheY-homologous receiver domain MASE_15580 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_15580 SM00091 PAS domain MASE_15580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_15630 SM00421 helix_turn_helix, Lux Regulon MASE_15660 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins MASE_15665 SM00421 helix_turn_helix, Lux Regulon MASE_15665 SM00448 cheY-homologous receiver domain MASE_15670 SM00387 Histidine kinase-like ATPases MASE_15680 SM00487 DEAD-like helicases superfamily MASE_15680 SM00490 helicase superfamily c-terminal domain MASE_15705 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_15705 SM00091 PAS domain MASE_15705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_15710 SM00155 Phospholipase D. Active site motifs. MASE_15740 SM00448 cheY-homologous receiver domain MASE_15750 SM00387 Histidine kinase-like ATPases MASE_15755 SM00849 Metallo-beta-lactamase superfamily MASE_15760 SM00486 DNA polymerase type-B family MASE_15775 SM00360 RNA recognition motif MASE_15810 SM00986 Uracil DNA glycosylase superfamily MASE_15810 SM00987 UreE urease accessory protein, C-terminal domain MASE_15815 SM00052 Putative diguanylate phosphodiesterase MASE_15815 SM00267 diguanylate cyclase MASE_15815 SM00448 cheY-homologous receiver domain MASE_15885 SM00173 Ras subfamily of RAS small GTPases MASE_15885 SM00175 Rab subfamily of small GTPases MASE_15890 SM00052 Putative diguanylate phosphodiesterase MASE_15890 SM00267 diguanylate cyclase MASE_15900 SM00563 Phosphate acyltransferases MASE_15905 SM00563 Phosphate acyltransferases MASE_16030 SM00052 Putative diguanylate phosphodiesterase MASE_16030 SM00267 diguanylate cyclase MASE_16050 SM00849 Metallo-beta-lactamase superfamily MASE_16095 SM00530 Helix-turn-helix XRE-family like proteins MASE_16115 SM00903 Flavin reductase like domain MASE_16150 SM00100 Cyclic nucleotide-monophosphate binding domain MASE_16175 SM00354 helix_turn _helix lactose operon repressor MASE_16180 SM00849 Metallo-beta-lactamase superfamily MASE_16220 SM00900 MASE_16220 MASE_16295 SM00028 Tetratricopeptide repeats MASE_16300 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. MASE_16310 SM00267 diguanylate cyclase MASE_16310 SM00448 cheY-homologous receiver domain MASE_16315 SM00479 MASE_16315 MASE_16320 SM00116 Domain in cystathionine beta-synthase and other proteins. MASE_16340 SM00387 Histidine kinase-like ATPases MASE_16340 SM00388 His Kinase A (phosphoacceptor) domain MASE_16340 SM00448 cheY-homologous receiver domain MASE_16370 SM00421 helix_turn_helix, Lux Regulon MASE_16370 SM00448 cheY-homologous receiver domain MASE_16395 SM01358 MASE_16395 MASE_16410 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MASE_16410 SM00240 Forkhead associated domain MASE_16415 SM00220 Serine/Threonine protein kinases, catalytic domain MASE_16420 SM00028 Tetratricopeptide repeats MASE_16425 SM00387 Histidine kinase-like ATPases MASE_16430 SM00421 helix_turn_helix, Lux Regulon MASE_16430 SM00448 cheY-homologous receiver domain MASE_16445 SM00248 ankyrin repeats MASE_16450 SM01060 MASE_16450 MASE_16490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_16540 SM00984 UDP binding domain MASE_16745 SM00028 Tetratricopeptide repeats MASE_16805 SM00662 RNA polymerases D MASE_16810 SM00363 S4 RNA-binding domain MASE_16810 SM01390 MASE_16810 MASE_16880 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. MASE_16885 SM01374 MASE_16885 MASE_16890 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MASE_16890 SM00387 Histidine kinase-like ATPases MASE_16890 SM00388 His Kinase A (phosphoacceptor) domain MASE_16890 SM00448 cheY-homologous receiver domain MASE_16905 SM00967 RNA 2'-O ribose methyltransferase substrate binding MASE_16910 SM00316 Ribosomal protein S1-like RNA-binding domain MASE_16910 SM00357 Cold shock protein domain MASE_16910 SM00955 MASE_16910 MASE_16945 SM00671 Sel1-like repeats. MASE_16975 SM00062 Bacterial periplasmic substrate-binding proteins MASE_16980 SM00387 Histidine kinase-like ATPases MASE_16980 SM00388 His Kinase A (phosphoacceptor) domain MASE_16980 SM00448 cheY-homologous receiver domain MASE_17005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_17010 SM00344 helix_turn_helix ASNC type MASE_17020 SM00357 Cold shock protein domain MASE_17050 SM00448 cheY-homologous receiver domain MASE_17060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_17060 SM00387 Histidine kinase-like ATPases MASE_17060 SM00388 His Kinase A (phosphoacceptor) domain MASE_17065 SM00448 cheY-homologous receiver domain MASE_17075 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MASE_17145 SM00382 ATPases associated with a variety of cellular activities MASE_17150 SM00421 helix_turn_helix, Lux Regulon MASE_17170 SM00530 Helix-turn-helix XRE-family like proteins MASE_17175 SM00382 ATPases associated with a variety of cellular activities MASE_17175 SM01086 C-terminal, D2-small domain, of ClpB protein MASE_17185 SM00357 Cold shock protein domain MASE_17205 SM00487 DEAD-like helicases superfamily MASE_17205 SM00490 helicase superfamily c-terminal domain MASE_17225 SM00919 Malic enzyme, NAD binding domain MASE_17225 SM01274 MASE_17225 MASE_17275 SM00052 Putative diguanylate phosphodiesterase MASE_17290 SM00382 ATPases associated with a variety of cellular activities MASE_17295 SM00382 ATPases associated with a variety of cellular activities MASE_17295 SM00962 SRP54-type protein, GTPase domain MASE_17295 SM00963 SRP54-type protein, helical bundle domain MASE_17365 SM00052 Putative diguanylate phosphodiesterase MASE_17380 SM00382 ATPases associated with a variety of cellular activities MASE_17385 SM00448 cheY-homologous receiver domain MASE_17385 SM00862 Transcriptional regulatory protein, C terminal MASE_17390 SM00387 Histidine kinase-like ATPases MASE_17390 SM00388 His Kinase A (phosphoacceptor) domain MASE_17410 SM00116 Domain in cystathionine beta-synthase and other proteins. MASE_17455 SM00028 Tetratricopeptide repeats MASE_17495 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. MASE_17520 SM00838 Elongation factor G C-terminus MASE_17520 SM00889 Elongation factor G, domain IV MASE_17535 SM00663 RNA polymerase I subunit A N-terminus MASE_17560 SM00649 Ribosomal protein L11/L12 MASE_17565 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. MASE_17565 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. MASE_17575 SM00382 ATPases associated with a variety of cellular activities MASE_17600 SM00487 DEAD-like helicases superfamily MASE_17600 SM00490 helicase superfamily c-terminal domain MASE_17640 SM00642 Alpha-amylase domain MASE_17675 SM00487 DEAD-like helicases superfamily MASE_17675 SM00490 helicase superfamily c-terminal domain MASE_17690 SM00849 Metallo-beta-lactamase superfamily MASE_17700 SM00841 Elongation factor P, C-terminal MASE_17700 SM01185 MASE_17700 MASE_17790 SM00244 prohibitin homologues MASE_17795 SM00244 prohibitin homologues MASE_17815 SM01340 MASE_17815 MASE_17820 SM00257 Lysin motif MASE_17820 SM00646 MASE_17820 MASE_17880 SM00382 ATPases associated with a variety of cellular activities MASE_17910 SM00849 Metallo-beta-lactamase superfamily MASE_17915 SM00448 cheY-homologous receiver domain MASE_17915 SM00862 Transcriptional regulatory protein, C terminal MASE_17920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_17920 SM00387 Histidine kinase-like ATPases MASE_17920 SM00388 His Kinase A (phosphoacceptor) domain MASE_17965 SM00382 ATPases associated with a variety of cellular activities MASE_17975 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_17980 SM00387 Histidine kinase-like ATPases MASE_17985 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MASE_18015 SM00345 helix_turn_helix gluconate operon transcriptional repressor MASE_18015 SM00866 MASE_18015 MASE_18055 SM00267 diguanylate cyclase MASE_18080 SM00354 helix_turn _helix lactose operon repressor MASE_18090 SM00382 ATPases associated with a variety of cellular activities MASE_18095 SM00382 ATPases associated with a variety of cellular activities MASE_18120 SM00382 ATPases associated with a variety of cellular activities MASE_18300 SM00116 Domain in cystathionine beta-synthase and other proteins. MASE_18315 SM00867 YceI-like domain MASE_18350 SM00829 Enoylreductase MASE_18355 SM00267 diguanylate cyclase MASE_18360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_18360 SM00387 Histidine kinase-like ATPases MASE_18360 SM00388 His Kinase A (phosphoacceptor) domain MASE_18360 SM00448 cheY-homologous receiver domain MASE_18395 SM00422 helix_turn_helix, mercury resistance MASE_18415 SM00422 helix_turn_helix, mercury resistance MASE_18460 SM00530 Helix-turn-helix XRE-family like proteins MASE_18490 SM00487 DEAD-like helicases superfamily MASE_18520 SM00382 ATPases associated with a variety of cellular activities MASE_18540 SM00420 helix_turn_helix, Deoxyribose operon repressor MASE_18540 SM01134 MASE_18540 MASE_18555 SM00267 diguanylate cyclase MASE_18605 SM01002 Alanine dehydrogenase/PNT, C-terminal domain MASE_18605 SM01003 Alanine dehydrogenase/PNT, N-terminal domain MASE_18655 SM00965 Secretin and TonB N terminus short domain MASE_18715 SM00346 helix_turn_helix isocitrate lyase regulation MASE_18730 SM00656 MASE_18730 MASE_18740 SM00883 Chaperonin 10 Kd subunit MASE_18775 SM00878 Biotin carboxylase C-terminal domain MASE_18795 SM00479 MASE_18795 MASE_18795 SM00990 MASE_18795 MASE_18825 SM00062 Bacterial periplasmic substrate-binding proteins MASE_18845 SM00798 AICARFT/IMPCHase bienzyme MASE_18845 SM00851 MGS-like domain MASE_18855 SM01209 MASE_18855 MASE_18855 SM01210 MASE_18855 MASE_18860 SM00047 Lysozyme subfamily 2 MASE_18885 SM00448 cheY-homologous receiver domain MASE_18885 SM00862 Transcriptional regulatory protein, C terminal MASE_18890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MASE_18890 SM00387 Histidine kinase-like ATPases MASE_18890 SM00388 His Kinase A (phosphoacceptor) domain MASE_18930 SM00382 ATPases associated with a variety of cellular activities MASE_18985 SM00849 Metallo-beta-lactamase superfamily MASE_19015 SM00867 YceI-like domain MASE_19050 SM00382 ATPases associated with a variety of cellular activities MASE_19075 SM00320 WD40 repeats MASE_19095 SM00316 Ribosomal protein S1-like RNA-binding domain MASE_19095 SM00732 Likely ribonuclease with RNase H fold. MASE_19105 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. MASE_19125 SM00342 helix_turn_helix, arabinose operon control protein MASE_19160 SM00633 Glycosyl hydrolase family 10 MASE_19170 SM00861 Transketolase, pyrimidine binding domain MASE_19210 SM00710 Parallel beta-helix repeats MASE_19255 SM00631 MASE_19255 MASE_19360 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MASE_19360 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MASE_19360 SM00091 PAS domain MASE_19360 SM00267 diguanylate cyclase MASE_19365 SM00563 Phosphate acyltransferases MASE_19385 SM00382 ATPases associated with a variety of cellular activities MASE_19415 SM00245 tail specific protease MASE_19435 SM00448 cheY-homologous receiver domain MASE_19435 SM00862 Transcriptional regulatory protein, C terminal MASE_19440 SM00387 Histidine kinase-like ATPases MASE_19440 SM00388 His Kinase A (phosphoacceptor) domain MASE_19460 SM00345 helix_turn_helix gluconate operon transcriptional repressor MASE_19460 SM00866 MASE_19460 MASE_19505 SM00382 ATPases associated with a variety of cellular activities MASE_19575 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase MASE_19685 SM00354 helix_turn _helix lactose operon repressor MASE_19705 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MASE_19715 SM01144 MASE_19715 MASE_19735 SM00382 ATPases associated with a variety of cellular activities MASE_19775 SM00470 ParB-like nuclease domain MASE_19790 SM01228 MASE_19790 MASE_19825 SM01234 MASE_19825