locus-tag class description ALT831_00001 PF00308 Bacterial dnaA protein ALT831_00001 PF08299 Bacterial dnaA protein helix-turn-helix ALT831_00001 PF11638 DnaA N-terminal domain ALT831_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain ALT831_00002 PF02767 DNA polymerase III beta subunit, central domain ALT831_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain ALT831_00003 PF02463 RecF/RecN/SMC N terminal domain ALT831_00004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00004 PF18053 DNA gyrase B subunit insert domain ALT831_00004 PF01751 Toprim domain ALT831_00004 PF00204 DNA gyrase B ALT831_00004 PF00986 DNA gyrase B subunit, carboxyl terminus ALT831_00008 PF05746 DALR anticodon binding domain ALT831_00008 PF02092 Glycyl-tRNA synthetase beta subunit ALT831_00009 PF02091 Glycyl-tRNA synthetase alpha subunit ALT831_00010 PF03352 Methyladenine glycosylase ALT831_00012 PF04220 Der GTPase activator (YihI) ALT831_00014 PF00034 Cytochrome c ALT831_00015 PF01926 50S ribosome-binding GTPase ALT831_00016 PF01612 3'-5' exonuclease ALT831_00016 PF01367 5'-3' exonuclease, C-terminal SAM fold ALT831_00016 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ALT831_00016 PF00476 DNA polymerase family A ALT831_00018 PF02386 Cation transport protein ALT831_00019 PF02254 TrkA-N domain ALT831_00019 PF02080 TrkA-C domain ALT831_00020 PF01189 16S rRNA methyltransferase RsmB/F ALT831_00020 PF01029 NusB family ALT831_00021 PF02911 Formyl transferase, C-terminal domain ALT831_00021 PF00551 Formyl transferase ALT831_00022 PF01327 Polypeptide deformylase ALT831_00024 PF02481 DNA recombination-mediator protein A ALT831_00024 PF17782 DprA winged helix domain ALT831_00025 PF04361 Protein of unknown function (DUF494) ALT831_00027 PF01300 Telomere recombination ALT831_00028 PF01218 Coproporphyrinogen III oxidase ALT831_00029 PF03922 OmpW family ALT831_00031 PF08501 Shikimate dehydrogenase substrate binding domain ALT831_00031 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ALT831_00031 PF01488 Shikimate / quinate 5-dehydrogenase ALT831_00032 PF00132 Bacterial transferase hexapeptide (six repeats) ALT831_00041 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALT831_00041 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALT831_00041 PF14579 Helix-hairpin-helix motif ALT831_00041 PF02811 PHP domain ALT831_00041 PF01336 OB-fold nucleic acid binding domain ALT831_00047 PF04389 Peptidase family M28 ALT831_00047 PF02225 PA domain ALT831_00048 PF00440 Bacterial regulatory proteins, tetR family ALT831_00049 PF04127 DNA / pantothenate metabolism flavoprotein ALT831_00049 PF02441 Flavoprotein ALT831_00050 PF04002 RadC-like JAB domain ALT831_00054 PF06082 Exopolysaccharide biosynthesis protein YbjH ALT831_00055 PF00830 Ribosomal L28 family ALT831_00056 PF00471 Ribosomal protein L33 ALT831_00058 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ALT831_00058 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ALT831_00058 PF06827 Zinc finger found in FPG and IleRS ALT831_00059 PF01467 Cytidylyltransferase-like ALT831_00063 PF00990 Diguanylate cyclase, GGDEF domain ALT831_00063 PF03707 Bacterial signalling protein N terminal repeat ALT831_00063 PF00563 EAL domain ALT831_00064 PF00155 Aminotransferase class I and II ALT831_00065 PF00107 Zinc-binding dehydrogenase ALT831_00065 PF08240 Alcohol dehydrogenase GroES-like domain ALT831_00066 PF00581 Rhodanese-like domain ALT831_00067 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease ALT831_00067 PF01694 Rhomboid family ALT831_00069 PF04345 Chorismate lyase ALT831_00070 PF01040 UbiA prenyltransferase family ALT831_00071 PF04380 Membrane fusogenic activity ALT831_00072 PF00580 UvrD/REP helicase N-terminal domain ALT831_00072 PF13361 UvrD-like helicase C-terminal domain ALT831_00073 PF00563 EAL domain ALT831_00073 PF00990 Diguanylate cyclase, GGDEF domain ALT831_00073 PF03707 Bacterial signalling protein N terminal repeat ALT831_00074 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALT831_00077 PF00589 Phage integrase family ALT831_00079 PF08240 Alcohol dehydrogenase GroES-like domain ALT831_00079 PF00107 Zinc-binding dehydrogenase ALT831_00080 PF14765 Polyketide synthase dehydratase ALT831_00080 PF00550 Phosphopantetheine attachment site ALT831_00080 PF08659 KR domain ALT831_00080 PF08240 Alcohol dehydrogenase GroES-like domain ALT831_00080 PF00698 Acyl transferase domain ALT831_00081 PF00106 short chain dehydrogenase ALT831_00082 PF03466 LysR substrate binding domain ALT831_00082 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_00086 PF00109 Beta-ketoacyl synthase, N-terminal domain ALT831_00086 PF02801 Beta-ketoacyl synthase, C-terminal domain ALT831_00086 PF00698 Acyl transferase domain ALT831_00086 PF08240 Alcohol dehydrogenase GroES-like domain ALT831_00086 PF00107 Zinc-binding dehydrogenase ALT831_00086 PF08659 KR domain ALT831_00086 PF00550 Phosphopantetheine attachment site ALT831_00086 PF14765 Polyketide synthase dehydratase ALT831_00086 PF16197 Ketoacyl-synthetase C-terminal extension ALT831_00088 PF00296 Luciferase-like monooxygenase ALT831_00089 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALT831_00090 PF00171 Aldehyde dehydrogenase family ALT831_00093 PF06834 TraU protein ALT831_00100 PF00171 Aldehyde dehydrogenase family ALT831_00101 PF00158 Sigma-54 interaction domain ALT831_00101 PF13188 PAS domain ALT831_00101 PF02954 Bacterial regulatory protein, Fis family ALT831_00103 PF00465 Iron-containing alcohol dehydrogenase ALT831_00105 PF00672 HAMP domain ALT831_00105 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALT831_00105 PF00072 Response regulator receiver domain ALT831_00105 PF01627 Hpt domain ALT831_00105 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00114 PF01434 Peptidase family M41 ALT831_00114 PF06480 FtsH Extracellular ALT831_00114 PF17862 AAA+ lid domain ALT831_00114 PF00004 ATPase family associated with various cellular activities (AAA) ALT831_00118 PF18284 DNA methylase N-terminal domain ALT831_00118 PF00145 C-5 cytosine-specific DNA methylase ALT831_00133 PF13533 Biotin-lipoyl like ALT831_00134 PF00005 ABC transporter ALT831_00136 PF07715 TonB-dependent Receptor Plug Domain ALT831_00136 PF00593 TonB dependent receptor ALT831_00139 PF02770 Acyl-CoA dehydrogenase, middle domain ALT831_00139 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALT831_00139 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALT831_00140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_00140 PF03466 LysR substrate binding domain ALT831_00141 PF00753 Metallo-beta-lactamase superfamily ALT831_00142 PF04317 YcjX-like family, DUF463 ALT831_00145 PF06968 Biotin and Thiamin Synthesis associated domain ALT831_00145 PF04055 Radical SAM superfamily ALT831_00146 PF05690 Thiazole biosynthesis protein ThiG ALT831_00148 PF00899 ThiF family ALT831_00149 PF02581 Thiamine monophosphate synthase ALT831_00150 PF01964 Radical SAM ThiC family ALT831_00150 PF13667 ThiC-associated domain ALT831_00152 PF07219 HemY protein N-terminus ALT831_00152 PF07719 Tetratricopeptide repeat ALT831_00153 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ALT831_00154 PF02602 Uroporphyrinogen-III synthase HemD ALT831_00155 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ALT831_00155 PF03900 Porphobilinogen deaminase, C-terminal domain ALT831_00156 PF00990 Diguanylate cyclase, GGDEF domain ALT831_00156 PF00072 Response regulator receiver domain ALT831_00158 PF00625 Guanylate kinase ALT831_00159 PF01192 RNA polymerase Rpb6 ALT831_00160 PF13291 ACT domain ALT831_00160 PF02824 TGS domain ALT831_00160 PF04607 Region found in RelA / SpoT proteins ALT831_00161 PF01042 Endoribonuclease L-PSP ALT831_00162 PF00588 SpoU rRNA Methylase family ALT831_00162 PF12105 SpoU, rRNA methylase, C-terminal ALT831_00163 PF17191 RecG wedge domain ALT831_00163 PF00271 Helicase conserved C-terminal domain ALT831_00163 PF00270 DEAD/DEAH box helicase ALT831_00164 PF04445 Putative SAM-dependent methyltransferase ALT831_00165 PF08534 Redoxin ALT831_00168 PF00528 Binding-protein-dependent transport system inner membrane component ALT831_00169 PF00005 ABC transporter ALT831_00169 PF08402 TOBE domain ALT831_00171 PF03922 OmpW family ALT831_00174 PF00563 EAL domain ALT831_00174 PF04940 Sensors of blue-light using FAD ALT831_00175 PF00990 Diguanylate cyclase, GGDEF domain ALT831_00175 PF00563 EAL domain ALT831_00175 PF13426 PAS domain ALT831_00176 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_00176 PF03466 LysR substrate binding domain ALT831_00177 PF01810 LysE type translocator ALT831_00178 PF00893 Small Multidrug Resistance protein ALT831_00181 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALT831_00181 PF00529 HlyD membrane-fusion protein of T1SS ALT831_00182 PF00873 AcrB/AcrD/AcrF family ALT831_00184 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ALT831_00184 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ALT831_00185 PF00850 Histone deacetylase domain ALT831_00186 PF00462 Glutaredoxin ALT831_00188 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_00188 PF00672 HAMP domain ALT831_00188 PF12729 Four helix bundle sensory module for signal transduction ALT831_00190 PF11737 Protein of unknown function (DUF3300) ALT831_00191 PF00925 GTP cyclohydrolase II ALT831_00192 PF00990 Diguanylate cyclase, GGDEF domain ALT831_00192 PF00563 EAL domain ALT831_00192 PF08448 PAS fold ALT831_00195 PF00270 DEAD/DEAH box helicase ALT831_00195 PF00271 Helicase conserved C-terminal domain ALT831_00195 PF00570 HRDC domain ALT831_00195 PF16124 RecQ zinc-binding ALT831_00195 PF09382 RQC domain ALT831_00196 PF03061 Thioesterase superfamily ALT831_00197 PF00571 CBS domain ALT831_00197 PF01769 Divalent cation transporter ALT831_00197 PF03448 MgtE intracellular N domain ALT831_00198 PF00892 EamA-like transporter family ALT831_00199 PF00990 Diguanylate cyclase, GGDEF domain ALT831_00199 PF08448 PAS fold ALT831_00200 PF00580 UvrD/REP helicase N-terminal domain ALT831_00200 PF13361 UvrD-like helicase C-terminal domain ALT831_00201 PF00132 Bacterial transferase hexapeptide (six repeats) ALT831_00201 PF06426 Serine acetyltransferase, N-terminal ALT831_00202 PF00990 Diguanylate cyclase, GGDEF domain ALT831_00203 PF13419 Haloacid dehalogenase-like hydrolase ALT831_00204 PF02899 Phage integrase, N-terminal SAM-like domain ALT831_00204 PF00589 Phage integrase family ALT831_00206 PF01678 Diaminopimelate epimerase ALT831_00207 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ALT831_00207 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ALT831_00210 PF01569 PAP2 superfamily ALT831_00211 PF03737 Aldolase/RraA ALT831_00214 PF02441 Flavoprotein ALT831_00215 PF01225 Mur ligase family, catalytic domain ALT831_00215 PF02875 Mur ligase family, glutamate ligase domain ALT831_00215 PF08245 Mur ligase middle domain ALT831_00216 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ALT831_00217 PF00719 Inorganic pyrophosphatase ALT831_00226 PF17755 UvrA DNA-binding domain ALT831_00226 PF00005 ABC transporter ALT831_00226 PF17760 UvrA interaction domain ALT831_00227 PF07690 Major Facilitator Superfamily ALT831_00228 PF13419 Haloacid dehalogenase-like hydrolase ALT831_00232 PF00356 Bacterial regulatory proteins, lacI family ALT831_00233 PF01263 Aldose 1-epimerase ALT831_00234 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ALT831_00234 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ALT831_00235 PF10509 Galactokinase galactose-binding signature ALT831_00235 PF08544 GHMP kinases C terminal ALT831_00235 PF00288 GHMP kinases N terminal domain ALT831_00236 PF00474 Sodium:solute symporter family ALT831_00237 PF00436 Single-strand binding protein family ALT831_00240 PF16874 Glycosyl hydrolase family 36 C-terminal domain ALT831_00240 PF16875 Glycosyl hydrolase family 36 N-terminal domain ALT831_00241 PF00474 Sodium:solute symporter family ALT831_00243 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ALT831_00243 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ALT831_00244 PF00455 DeoR C terminal sensor domain ALT831_00244 PF08220 DeoR-like helix-turn-helix domain ALT831_00245 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ALT831_00245 PF01266 FAD dependent oxidoreductase ALT831_00252 PF00263 Bacterial type II and III secretion system protein ALT831_00252 PF03958 Bacterial type II/III secretion system short domain ALT831_00253 PF13401 AAA domain ALT831_00253 PF01471 Putative peptidoglycan binding domain ALT831_00255 PF00437 Type II/IV secretion system protein ALT831_00255 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ALT831_00256 PF00482 Type II secretion system (T2SS), protein F ALT831_00258 PF07963 Prokaryotic N-terminal methylation motif ALT831_00259 PF07963 Prokaryotic N-terminal methylation motif ALT831_00266 PF04085 rod shape-determining protein MreC ALT831_00267 PF04093 rod shape-determining protein MreD ALT831_00268 PF02545 Maf-like protein ALT831_00269 PF10150 Ribonuclease E/G family ALT831_00269 PF00575 S1 RNA binding domain ALT831_00271 PF00795 Carbon-nitrogen hydrolase ALT831_00272 PF01523 Putative modulator of DNA gyrase ALT831_00274 PF04751 Protein of unknown function (DUF615) ALT831_00275 PF01523 Putative modulator of DNA gyrase ALT831_00277 PF02929 Beta galactosidase small chain ALT831_00277 PF00703 Glycosyl hydrolases family 2 ALT831_00277 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ALT831_00277 PF02837 Glycosyl hydrolases family 2, sugar binding domain ALT831_00277 PF16353 Domain of unknown function(DUF4981) ALT831_00278 PF00072 Response regulator receiver domain ALT831_00278 PF00486 Transcriptional regulatory protein, C terminal ALT831_00279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00279 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00279 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALT831_00280 PF08323 Starch synthase catalytic domain ALT831_00280 PF00534 Glycosyl transferases group 1 ALT831_00281 PF08468 Methyltransferase small domain N-terminal ALT831_00281 PF05175 Methyltransferase small domain ALT831_00282 PF02390 Putative methyltransferase ALT831_00284 PF00730 HhH-GPD superfamily base excision DNA repair protein ALT831_00284 PF14815 NUDIX domain ALT831_00284 PF00633 Helix-hairpin-helix motif ALT831_00285 PF04362 Bacterial Fe(2+) trafficking ALT831_00293 PF02899 Phage integrase, N-terminal SAM-like domain ALT831_00293 PF00589 Phage integrase family ALT831_00303 PF00873 AcrB/AcrD/AcrF family ALT831_00306 PF01435 Peptidase family M48 ALT831_00310 PF17200 Single Cache domain 2 ALT831_00310 PF00672 HAMP domain ALT831_00310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_00311 PF00072 Response regulator receiver domain ALT831_00312 PF01627 Hpt domain ALT831_00312 PF01584 CheW-like domain ALT831_00312 PF09078 CheY binding ALT831_00312 PF02895 Signal transducing histidine kinase, homodimeric domain ALT831_00312 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00313 PF01584 CheW-like domain ALT831_00314 PF13426 PAS domain ALT831_00314 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_00314 PF08447 PAS fold ALT831_00315 PF03705 CheR methyltransferase, all-alpha domain ALT831_00315 PF01739 CheR methyltransferase, SAM binding domain ALT831_00316 PF03975 CheD chemotactic sensory transduction ALT831_00317 PF00072 Response regulator receiver domain ALT831_00317 PF01339 CheB methylesterase ALT831_00318 PF17200 Single Cache domain 2 ALT831_00318 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_00318 PF00672 HAMP domain ALT831_00319 PF00072 Response regulator receiver domain ALT831_00320 PF09078 CheY binding ALT831_00320 PF02895 Signal transducing histidine kinase, homodimeric domain ALT831_00320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00320 PF01627 Hpt domain ALT831_00320 PF01584 CheW-like domain ALT831_00321 PF01584 CheW-like domain ALT831_00322 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_00322 PF13426 PAS domain ALT831_00322 PF08447 PAS fold ALT831_00323 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_00323 PF08447 PAS fold ALT831_00323 PF13426 PAS domain ALT831_00324 PF01739 CheR methyltransferase, SAM binding domain ALT831_00324 PF03705 CheR methyltransferase, all-alpha domain ALT831_00325 PF03975 CheD chemotactic sensory transduction ALT831_00326 PF00072 Response regulator receiver domain ALT831_00326 PF01339 CheB methylesterase ALT831_00328 PF13419 Haloacid dehalogenase-like hydrolase ALT831_00330 PF00356 Bacterial regulatory proteins, lacI family ALT831_00330 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ALT831_00332 PF01204 Trehalase ALT831_00335 PF13419 Haloacid dehalogenase-like hydrolase ALT831_00337 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00337 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00337 PF09308 LuxQ, periplasmic ALT831_00337 PF00072 Response regulator receiver domain ALT831_00340 PF00356 Bacterial regulatory proteins, lacI family ALT831_00341 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ALT831_00341 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ALT831_00343 PF03825 Nucleoside H+ symporter ALT831_00345 PF05199 GMC oxidoreductase ALT831_00345 PF00732 GMC oxidoreductase ALT831_00348 PF00465 Iron-containing alcohol dehydrogenase ALT831_00354 PF01063 Amino-transferase class IV ALT831_00355 PF00300 Histidine phosphatase superfamily (branch 1) ALT831_00357 PF00330 Aconitase family (aconitate hydratase) ALT831_00357 PF00694 Aconitase C-terminal domain ALT831_00359 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ALT831_00359 PF00437 Type II/IV secretion system protein ALT831_00360 PF00338 Ribosomal protein S10p/S20e ALT831_00361 PF00297 Ribosomal protein L3 ALT831_00362 PF00573 Ribosomal protein L4/L1 family ALT831_00363 PF00276 Ribosomal protein L23 ALT831_00364 PF00181 Ribosomal Proteins L2, RNA binding domain ALT831_00364 PF03947 Ribosomal Proteins L2, C-terminal domain ALT831_00365 PF00203 Ribosomal protein S19 ALT831_00366 PF00237 Ribosomal protein L22p/L17e ALT831_00367 PF00189 Ribosomal protein S3, C-terminal domain ALT831_00367 PF07650 KH domain ALT831_00368 PF00252 Ribosomal protein L16p/L10e ALT831_00369 PF00831 Ribosomal L29 protein ALT831_00370 PF00366 Ribosomal protein S17 ALT831_00372 PF00534 Glycosyl transferases group 1 ALT831_00372 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ALT831_00376 PF02743 Cache domain ALT831_00376 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_00376 PF00672 HAMP domain ALT831_00377 PF01432 Peptidase family M3 ALT831_00380 PF01842 ACT domain ALT831_00380 PF00551 Formyl transferase ALT831_00382 PF04408 Helicase associated domain (HA2) ALT831_00382 PF00271 Helicase conserved C-terminal domain ALT831_00382 PF00270 DEAD/DEAH box helicase ALT831_00382 PF08482 ATP-dependent helicase C-terminal ALT831_00384 PF13406 Transglycosylase SLT domain ALT831_00385 PF00912 Transglycosylase ALT831_00385 PF14814 Bifunctional transglycosylase second domain ALT831_00385 PF00905 Penicillin binding protein transpeptidase domain ALT831_00388 PF05661 Protein of unknown function (DUF808) ALT831_00390 PF12833 Helix-turn-helix domain ALT831_00392 PF00543 Nitrogen regulatory protein P-II ALT831_00393 PF00909 Ammonium Transporter Family ALT831_00395 PF04261 Dyp-type peroxidase family ALT831_00396 PF00672 HAMP domain ALT831_00396 PF00211 Adenylate and Guanylate cyclase catalytic domain ALT831_00397 PF00202 Aminotransferase class-III ALT831_00398 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALT831_00398 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALT831_00401 PF00873 AcrB/AcrD/AcrF family ALT831_00403 PF01627 Hpt domain ALT831_00403 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00403 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00403 PF00672 HAMP domain ALT831_00403 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALT831_00403 PF00072 Response regulator receiver domain ALT831_00404 PF03989 DNA gyrase C-terminal domain, beta-propeller ALT831_00404 PF00521 DNA gyrase/topoisomerase IV, subunit A ALT831_00406 PF00563 EAL domain ALT831_00406 PF13188 PAS domain ALT831_00406 PF03707 Bacterial signalling protein N terminal repeat ALT831_00406 PF00990 Diguanylate cyclase, GGDEF domain ALT831_00408 PF00171 Aldehyde dehydrogenase family ALT831_00409 PF04958 Arginine N-succinyltransferase beta subunit ALT831_00410 PF00202 Aminotransferase class-III ALT831_00412 PF00117 Glutamine amidotransferase class-I ALT831_00413 PF00579 tRNA synthetases class I (W and Y) ALT831_00414 PF00834 Ribulose-phosphate 3 epimerase family ALT831_00418 PF02086 D12 class N6 adenine-specific DNA methyltransferase ALT831_00420 PF01761 3-dehydroquinate synthase ALT831_00421 PF01202 Shikimate kinase ALT831_00422 PF03958 Bacterial type II/III secretion system short domain ALT831_00422 PF00263 Bacterial type II and III secretion system protein ALT831_00422 PF07660 Secretin and TonB N terminus short domain ALT831_00422 PF11741 AMIN domain ALT831_00424 PF04350 Pilus assembly protein, PilO ALT831_00425 PF05137 Fimbrial assembly protein (PilN) ALT831_00426 PF11104 Type IV pilus assembly protein PilM; ALT831_00427 PF00905 Penicillin binding protein transpeptidase domain ALT831_00427 PF17092 Penicillin-binding protein OB-like domain ALT831_00427 PF00912 Transglycosylase ALT831_00428 PF03949 Malic enzyme, NAD binding domain ALT831_00428 PF00390 Malic enzyme, N-terminal domain ALT831_00430 PF02798 Glutathione S-transferase, N-terminal domain ALT831_00433 PF00199 Catalase ALT831_00433 PF06628 Catalase-related immune-responsive ALT831_00438 PF03707 Bacterial signalling protein N terminal repeat ALT831_00438 PF00990 Diguanylate cyclase, GGDEF domain ALT831_00438 PF00563 EAL domain ALT831_00439 PF00696 Amino acid kinase family ALT831_00439 PF00583 Acetyltransferase (GNAT) family ALT831_00440 PF00206 Lyase ALT831_00440 PF14698 Argininosuccinate lyase C-terminal ALT831_00441 PF00764 Arginosuccinate synthase ALT831_00442 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALT831_00442 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALT831_00443 PF00696 Amino acid kinase family ALT831_00444 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALT831_00444 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALT831_00445 PF02142 MGS-like domain ALT831_00447 PF02107 Flagellar L-ring protein ALT831_00450 PF00072 Response regulator receiver domain ALT831_00450 PF00486 Transcriptional regulatory protein, C terminal ALT831_00451 PF16527 Two-component sensor protein CpxA, periplasmic domain ALT831_00451 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00451 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00451 PF00672 HAMP domain ALT831_00452 PF12146 Serine aminopeptidase, S33 ALT831_00453 PF00588 SpoU rRNA Methylase family ALT831_00454 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALT831_00455 PF00005 ABC transporter ALT831_00455 PF02687 FtsX-like permease family ALT831_00455 PF12704 MacB-like periplasmic core domain ALT831_00456 PF02321 Outer membrane efflux protein ALT831_00458 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ALT831_00458 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ALT831_00459 PF02556 Preprotein translocase subunit SecB ALT831_00460 PF00462 Glutaredoxin ALT831_00461 PF00581 Rhodanese-like domain ALT831_00462 PF01551 Peptidase family M23 ALT831_00463 PF04748 Divergent polysaccharide deacetylase ALT831_00465 PF03009 Glycerophosphoryl diester phosphodiesterase family ALT831_00467 PF02666 Phosphatidylserine decarboxylase ALT831_00468 PF03193 RsgA GTPase ALT831_00469 PF00929 Exonuclease ALT831_00473 PF07715 TonB-dependent Receptor Plug Domain ALT831_00473 PF00593 TonB dependent receptor ALT831_00476 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALT831_00476 PF00205 Thiamine pyrophosphate enzyme, central domain ALT831_00476 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALT831_00477 PF10369 Small subunit of acetolactate synthase ALT831_00479 PF02416 mttA/Hcf106 family ALT831_00480 PF02416 mttA/Hcf106 family ALT831_00481 PF00902 Sec-independent protein translocase protein (TatC) ALT831_00483 PF01026 TatD related DNase ALT831_00484 PF00563 EAL domain ALT831_00484 PF01590 GAF domain ALT831_00484 PF00990 Diguanylate cyclase, GGDEF domain ALT831_00484 PF00360 Phytochrome region ALT831_00485 PF00490 Delta-aminolevulinic acid dehydratase ALT831_00486 PF02541 Ppx/GppA phosphatase family ALT831_00487 PF00270 DEAD/DEAH box helicase ALT831_00487 PF00271 Helicase conserved C-terminal domain ALT831_00488 PF00085 Thioredoxin ALT831_00489 PF07497 Rho termination factor, RNA-binding domain ALT831_00489 PF07498 Rho termination factor, N-terminal domain ALT831_00489 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALT831_00490 PF01546 Peptidase family M20/M25/M40 ALT831_00490 PF07687 Peptidase dimerisation domain ALT831_00491 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00491 PF00072 Response regulator receiver domain ALT831_00491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00491 PF09308 LuxQ, periplasmic ALT831_00492 PF06965 Na+/H+ antiporter 1 ALT831_00493 PF00731 AIR carboxylase ALT831_00494 PF02222 ATP-grasp domain ALT831_00494 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ALT831_00497 PF00210 Ferritin-like domain ALT831_00498 PF07995 Glucose / Sorbosone dehydrogenase ALT831_00499 PF00326 Prolyl oligopeptidase family ALT831_00499 PF07676 WD40-like Beta Propeller Repeat ALT831_00501 PF00085 Thioredoxin ALT831_00504 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) ALT831_00505 PF00709 Adenylosuccinate synthetase ALT831_00506 PF00171 Aldehyde dehydrogenase family ALT831_00511 PF03553 Na+/H+ antiporter family ALT831_00512 PF00933 Glycosyl hydrolase family 3 N terminal domain ALT831_00514 PF07075 Protein of unknown function (DUF1343) ALT831_00515 PF01380 SIS domain ALT831_00516 PF00842 Alanine racemase, C-terminal domain ALT831_00516 PF01168 Alanine racemase, N-terminal domain ALT831_00519 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALT831_00526 PF00464 Serine hydroxymethyltransferase ALT831_00527 PF03466 LysR substrate binding domain ALT831_00527 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_00528 PF08274 PhnA Zinc-Ribbon ALT831_00528 PF03831 PhnA domain ALT831_00529 PF00583 Acetyltransferase (GNAT) family ALT831_00531 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ALT831_00546 PF00108 Thiolase, N-terminal domain ALT831_00546 PF02803 Thiolase, C-terminal domain ALT831_00547 PF00378 Enoyl-CoA hydratase/isomerase ALT831_00547 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALT831_00547 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALT831_00548 PF01464 Transglycosylase SLT domain ALT831_00548 PF01551 Peptidase family M23 ALT831_00548 PF10145 Phage-related minor tail protein ALT831_00549 PF00557 Metallopeptidase family M24 ALT831_00551 PF00348 Polyprenyl synthetase ALT831_00552 PF00829 Ribosomal prokaryotic L21 protein ALT831_00553 PF01016 Ribosomal L27 protein ALT831_00554 PF01926 50S ribosome-binding GTPase ALT831_00554 PF01018 GTP1/OBG ALT831_00556 PF09055 Nickel-containing superoxide dismutase ALT831_00559 PF00186 Dihydrofolate reductase ALT831_00560 PF04542 Sigma-70 region 2 ALT831_00560 PF04539 Sigma-70 region 3 ALT831_00560 PF00140 Sigma-70 factor, region 1.2 ALT831_00560 PF04545 Sigma-70, region 4 ALT831_00561 PF01551 Peptidase family M23 ALT831_00561 PF01476 LysM domain ALT831_00562 PF09335 SNARE associated Golgi protein ALT831_00564 PF01142 tRNA pseudouridine synthase D (TruD) ALT831_00565 PF02542 YgbB family ALT831_00566 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ALT831_00567 PF04977 Septum formation initiator ALT831_00569 PF00672 HAMP domain ALT831_00569 PF17200 Single Cache domain 2 ALT831_00569 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_00570 PF00171 Aldehyde dehydrogenase family ALT831_00570 PF01619 Proline dehydrogenase ALT831_00570 PF14850 DNA-binding domain of Proline dehydrogenase ALT831_00570 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ALT831_00571 PF02321 Outer membrane efflux protein ALT831_00573 PF00873 AcrB/AcrD/AcrF family ALT831_00574 PF00486 Transcriptional regulatory protein, C terminal ALT831_00574 PF00072 Response regulator receiver domain ALT831_00575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00575 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00579 PF02976 DNA mismatch repair enzyme MutH ALT831_00580 PF00293 NUDIX domain ALT831_00581 PF01590 GAF domain ALT831_00581 PF00391 PEP-utilising enzyme, mobile domain ALT831_00581 PF05524 PEP-utilising enzyme, N-terminal ALT831_00581 PF02896 PEP-utilising enzyme, TIM barrel domain ALT831_00582 PF01925 Sulfite exporter TauE/SafE ALT831_00583 PF01790 Prolipoprotein diacylglyceryl transferase ALT831_00584 PF00303 Thymidylate synthase ALT831_00585 PF00072 Response regulator receiver domain ALT831_00586 PF00990 Diguanylate cyclase, GGDEF domain ALT831_00586 PF05230 MASE2 domain ALT831_00587 PF00672 HAMP domain ALT831_00587 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALT831_00587 PF00072 Response regulator receiver domain ALT831_00587 PF01627 Hpt domain ALT831_00587 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00587 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00588 PF07690 Major Facilitator Superfamily ALT831_00591 PF00849 RNA pseudouridylate synthase ALT831_00592 PF12137 RNA polymerase recycling family C-terminal ALT831_00592 PF00176 SNF2 family N-terminal domain ALT831_00592 PF18339 RapA N-terminal Tudor like domain 1 ALT831_00592 PF18337 RapA N-terminal Tudor like domain ALT831_00592 PF00271 Helicase conserved C-terminal domain ALT831_00595 PF02562 PhoH-like protein ALT831_00595 PF13638 PIN domain ALT831_00596 PF00155 Aminotransferase class I and II ALT831_00596 PF00392 Bacterial regulatory proteins, gntR family ALT831_00597 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ALT831_00597 PF12801 4Fe-4S binding domain ALT831_00597 PF13746 4Fe-4S dicluster domain ALT831_00599 PF04820 Tryptophan halogenase ALT831_00600 PF10414 Sirohaem synthase dimerisation region ALT831_00600 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALT831_00601 PF03880 DbpA RNA binding domain ALT831_00601 PF00270 DEAD/DEAH box helicase ALT831_00601 PF00271 Helicase conserved C-terminal domain ALT831_00605 PF02321 Outer membrane efflux protein ALT831_00606 PF00293 NUDIX domain ALT831_00608 PF00149 Calcineurin-like phosphoesterase ALT831_00609 PF05728 Uncharacterised protein family (UPF0227) ALT831_00610 PF00204 DNA gyrase B ALT831_00610 PF00986 DNA gyrase B subunit, carboxyl terminus ALT831_00610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00610 PF01751 Toprim domain ALT831_00612 PF13419 Haloacid dehalogenase-like hydrolase ALT831_00616 PF04055 Radical SAM superfamily ALT831_00617 PF01132 Elongation factor P (EF-P) OB domain ALT831_00617 PF08207 Elongation factor P (EF-P) KOW-like domain ALT831_00617 PF09285 Elongation factor P, C-terminal ALT831_00618 PF00152 tRNA synthetases class II (D, K and N) ALT831_00619 PF07715 TonB-dependent Receptor Plug Domain ALT831_00619 PF00593 TonB dependent receptor ALT831_00622 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALT831_00623 PF05175 Methyltransferase small domain ALT831_00626 PF01722 BolA-like protein ALT831_00627 PF01569 PAP2 superfamily ALT831_00629 PF03861 ANTAR domain ALT831_00629 PF08376 Nitrate and nitrite sensing ALT831_00631 PF00916 Sulfate permease family ALT831_00631 PF01740 STAS domain ALT831_00632 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALT831_00632 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ALT831_00632 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ALT831_00632 PF04324 BFD-like [2Fe-2S] binding domain ALT831_00632 PF18267 Rubredoxin NAD+ reductase C-terminal domain ALT831_00633 PF13806 Rieske-like [2Fe-2S] domain ALT831_00634 PF04324 BFD-like [2Fe-2S] binding domain ALT831_00634 PF00384 Molybdopterin oxidoreductase ALT831_00634 PF01568 Molydopterin dinucleotide binding domain ALT831_00634 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALT831_00635 PF10414 Sirohaem synthase dimerisation region ALT831_00635 PF14824 Sirohaem biosynthesis protein central ALT831_00635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALT831_00636 PF00591 Glycosyl transferase family, a/b domain ALT831_00636 PF02885 Glycosyl transferase family, helical bundle domain ALT831_00637 PF00149 Calcineurin-like phosphoesterase ALT831_00637 PF02872 5'-nucleotidase, C-terminal domain ALT831_00638 PF00360 Phytochrome region ALT831_00638 PF01590 GAF domain ALT831_00638 PF00990 Diguanylate cyclase, GGDEF domain ALT831_00638 PF00563 EAL domain ALT831_00639 PF08447 PAS fold ALT831_00639 PF13426 PAS domain ALT831_00639 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_00641 PF00005 ABC transporter ALT831_00642 PF00528 Binding-protein-dependent transport system inner membrane component ALT831_00643 PF00005 ABC transporter ALT831_00646 PF01323 DSBA-like thioredoxin domain ALT831_00648 PF00593 TonB dependent receptor ALT831_00648 PF07715 TonB-dependent Receptor Plug Domain ALT831_00650 PF01636 Phosphotransferase enzyme family ALT831_00651 PF13746 4Fe-4S dicluster domain ALT831_00651 PF12801 4Fe-4S binding domain ALT831_00651 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ALT831_00654 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALT831_00654 PF02770 Acyl-CoA dehydrogenase, middle domain ALT831_00654 PF12806 Acetyl-CoA dehydrogenase C-terminal like ALT831_00654 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALT831_00657 PF13378 Enolase C-terminal domain-like ALT831_00657 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ALT831_00658 PF00596 Class II Aldolase and Adducin N-terminal domain ALT831_00660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALT831_00661 PF00873 AcrB/AcrD/AcrF family ALT831_00664 PF02743 Cache domain ALT831_00664 PF00672 HAMP domain ALT831_00664 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_00665 PF04546 Sigma-70, non-essential region ALT831_00665 PF03979 Sigma-70 factor, region 1.1 ALT831_00665 PF00140 Sigma-70 factor, region 1.2 ALT831_00665 PF04542 Sigma-70 region 2 ALT831_00665 PF04539 Sigma-70 region 3 ALT831_00665 PF04545 Sigma-70, region 4 ALT831_00666 PF01807 CHC2 zinc finger ALT831_00666 PF08275 DNA primase catalytic core, N-terminal domain ALT831_00666 PF08278 DNA primase DnaG DnaB-binding ALT831_00666 PF10410 DnaB-helicase binding domain of primase ALT831_00668 PF01165 Ribosomal protein S21 ALT831_00669 PF00814 Glycoprotease family ALT831_00671 PF02660 Glycerol-3-phosphate acyltransferase ALT831_00672 PF02152 Dihydroneopterin aldolase ALT831_00674 PF02673 Bacitracin resistance protein BacA ALT831_00675 PF01230 HIT domain ALT831_00678 PF03594 Benzoate membrane transport protein ALT831_00681 PF07715 TonB-dependent Receptor Plug Domain ALT831_00681 PF00593 TonB dependent receptor ALT831_00682 PF01070 FMN-dependent dehydrogenase ALT831_00685 PF00355 Rieske [2Fe-2S] domain ALT831_00686 PF13360 PQQ-like domain ALT831_00686 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALT831_00687 PF00158 Sigma-54 interaction domain ALT831_00687 PF02954 Bacterial regulatory protein, Fis family ALT831_00687 PF01590 GAF domain ALT831_00690 PF00171 Aldehyde dehydrogenase family ALT831_00694 PF13700 Domain of unknown function (DUF4158) ALT831_00694 PF01526 Tn3 transposase DDE domain ALT831_00695 PF02796 Helix-turn-helix domain of resolvase ALT831_00695 PF00239 Resolvase, N terminal domain ALT831_00699 PF01339 CheB methylesterase ALT831_00699 PF00072 Response regulator receiver domain ALT831_00700 PF00873 AcrB/AcrD/AcrF family ALT831_00706 PF07883 Cupin domain ALT831_00706 PF01381 Helix-turn-helix ALT831_00707 PF04381 Putative exonuclease, RdgC ALT831_00708 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00708 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00708 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALT831_00709 PF00486 Transcriptional regulatory protein, C terminal ALT831_00709 PF00072 Response regulator receiver domain ALT831_00710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00710 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00710 PF11808 Phosphate regulon sensor protein PhoR ALT831_00710 PF00989 PAS fold ALT831_00711 PF12849 PBP superfamily domain ALT831_00716 PF01618 MotA/TolQ/ExbB proton channel family ALT831_00717 PF01618 MotA/TolQ/ExbB proton channel family ALT831_00718 PF02472 Biopolymer transport protein ExbD/TolR ALT831_00719 PF03544 Gram-negative bacterial TonB protein C-terminal ALT831_00721 PF00072 Response regulator receiver domain ALT831_00722 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALT831_00722 PF00072 Response regulator receiver domain ALT831_00722 PF01627 Hpt domain ALT831_00722 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00722 PF00672 HAMP domain ALT831_00722 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00723 PF00501 AMP-binding enzyme ALT831_00723 PF13193 AMP-binding enzyme C-terminal domain ALT831_00725 PF07995 Glucose / Sorbosone dehydrogenase ALT831_00726 PF00330 Aconitase family (aconitate hydratase) ALT831_00726 PF11791 Aconitate B N-terminal domain ALT831_00726 PF06434 Aconitate hydratase 2 N-terminus ALT831_00727 PF00072 Response regulator receiver domain ALT831_00727 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00727 PF00672 HAMP domain ALT831_00727 PF01627 Hpt domain ALT831_00727 PF17149 Periplasmic sensor domain found in signal transduction proteins ALT831_00731 PF06434 Aconitate hydratase 2 N-terminus ALT831_00731 PF00330 Aconitase family (aconitate hydratase) ALT831_00731 PF11791 Aconitate B N-terminal domain ALT831_00733 PF00696 Amino acid kinase family ALT831_00733 PF01842 ACT domain ALT831_00735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_00735 PF00672 HAMP domain ALT831_00736 PF00149 Calcineurin-like phosphoesterase ALT831_00737 PF04379 ApaG domain ALT831_00738 PF00398 Ribosomal RNA adenine dimethylase ALT831_00739 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ALT831_00740 PF09312 SurA N-terminal domain ALT831_00740 PF00639 PPIC-type PPIASE domain ALT831_00741 PF03968 OstA-like protein ALT831_00741 PF04453 LPS transport system D ALT831_00742 PF00226 DnaJ domain ALT831_00742 PF05099 Tellurite resistance protein TerB ALT831_00743 PF00589 Phage integrase family ALT831_00743 PF02899 Phage integrase, N-terminal SAM-like domain ALT831_00744 PF10411 Disulfide bond isomerase protein N-terminus ALT831_00744 PF13098 Thioredoxin-like domain ALT831_00745 PF17768 RecJ OB domain ALT831_00745 PF02272 DHHA1 domain ALT831_00745 PF01368 DHH family ALT831_00747 PF02565 Recombination protein O C terminal ALT831_00747 PF11967 Recombination protein O N terminal ALT831_00748 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ALT831_00749 PF01648 4'-phosphopantetheinyl transferase superfamily ALT831_00750 PF05958 tRNA (Uracil-5-)-methyltransferase ALT831_00751 PF13291 ACT domain ALT831_00751 PF04607 Region found in RelA / SpoT proteins ALT831_00751 PF02824 TGS domain ALT831_00752 PF03819 MazG nucleotide pyrophosphohydrolase domain ALT831_00754 PF07715 TonB-dependent Receptor Plug Domain ALT831_00754 PF07660 Secretin and TonB N terminus short domain ALT831_00754 PF00593 TonB dependent receptor ALT831_00760 PF00501 AMP-binding enzyme ALT831_00760 PF13193 AMP-binding enzyme C-terminal domain ALT831_00762 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ALT831_00764 PF00535 Glycosyl transferase family 2 ALT831_00768 PF08521 Two-component sensor kinase N-terminal ALT831_00768 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00768 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00769 PF00486 Transcriptional regulatory protein, C terminal ALT831_00769 PF00072 Response regulator receiver domain ALT831_00771 PF00572 Ribosomal protein L13 ALT831_00772 PF00380 Ribosomal protein S9/S16 ALT831_00773 PF00355 Rieske [2Fe-2S] domain ALT831_00773 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ALT831_00774 PF00032 Cytochrome b(C-terminal)/b6/petD ALT831_00774 PF00033 Cytochrome b/b6/petB ALT831_00775 PF02167 Cytochrome C1 family ALT831_00776 PF00043 Glutathione S-transferase, C-terminal domain ALT831_00776 PF02798 Glutathione S-transferase, N-terminal domain ALT831_00777 PF04386 Stringent starvation protein B ALT831_00780 PF00072 Response regulator receiver domain ALT831_00780 PF00486 Transcriptional regulatory protein, C terminal ALT831_00781 PF01769 Divalent cation transporter ALT831_00781 PF03448 MgtE intracellular N domain ALT831_00781 PF00571 CBS domain ALT831_00782 PF00381 PTS HPr component phosphorylation site ALT831_00783 PF03668 P-loop ATPase protein family ALT831_00784 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ALT831_00785 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ALT831_00786 PF00309 Sigma-54 factor, Activator interacting domain (AID) ALT831_00786 PF04963 Sigma-54 factor, core binding domain ALT831_00786 PF04552 Sigma-54, DNA binding domain ALT831_00787 PF00005 ABC transporter ALT831_00787 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALT831_00788 PF03968 OstA-like protein ALT831_00791 PF00571 CBS domain ALT831_00791 PF01380 SIS domain ALT831_00792 PF01699 Sodium/calcium exchanger protein ALT831_00793 PF00005 ABC transporter ALT831_00794 PF02405 Permease MlaE ALT831_00795 PF02470 MlaD protein ALT831_00796 PF05494 MlaC protein ALT831_00798 PF01722 BolA-like protein ALT831_00799 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALT831_00800 PF13180 PDZ domain ALT831_00801 PF00595 PDZ domain ALT831_00801 PF13180 PDZ domain ALT831_00803 PF03969 AFG1-like ATPase ALT831_00804 PF01709 Transcriptional regulator ALT831_00807 PF00881 Nitroreductase family ALT831_00809 PF14403 Circularly permuted ATP-grasp type 2 ALT831_00810 PF08379 Bacterial transglutaminase-like N-terminal region ALT831_00810 PF01841 Transglutaminase-like superfamily ALT831_00811 PF04168 A predicted alpha-helical domain with a conserved ER motif. ALT831_00811 PF14403 Circularly permuted ATP-grasp type 2 ALT831_00814 PF02355 Protein export membrane protein ALT831_00814 PF07549 SecD/SecF GG Motif ALT831_00815 PF00999 Sodium/hydrogen exchanger family ALT831_00815 PF02080 TrkA-C domain ALT831_00815 PF03471 Transporter associated domain ALT831_00818 PF07715 TonB-dependent Receptor Plug Domain ALT831_00818 PF00593 TonB dependent receptor ALT831_00819 PF00892 EamA-like transporter family ALT831_00821 PF09308 LuxQ, periplasmic ALT831_00821 PF00072 Response regulator receiver domain ALT831_00821 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00821 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00822 PF13458 Periplasmic binding protein ALT831_00825 PF02772 S-adenosylmethionine synthetase, central domain ALT831_00825 PF02773 S-adenosylmethionine synthetase, C-terminal domain ALT831_00825 PF00438 S-adenosylmethionine synthetase, N-terminal domain ALT831_00826 PF00456 Transketolase, thiamine diphosphate binding domain ALT831_00826 PF02779 Transketolase, pyrimidine binding domain ALT831_00826 PF02780 Transketolase, C-terminal domain ALT831_00827 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALT831_00827 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALT831_00828 PF00162 Phosphoglycerate kinase ALT831_00829 PF00274 Fructose-bisphosphate aldolase class-I ALT831_00830 PF01219 Prokaryotic diacylglycerol kinase ALT831_00831 PF00884 Sulfatase ALT831_00831 PF08019 Phosphoethanolamine transferase EptA/EptB ALT831_00832 PF00486 Transcriptional regulatory protein, C terminal ALT831_00832 PF00072 Response regulator receiver domain ALT831_00833 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_00833 PF00672 HAMP domain ALT831_00833 PF00512 His Kinase A (phospho-acceptor) domain ALT831_00835 PF00529 HlyD membrane-fusion protein of T1SS ALT831_00835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALT831_00836 PF00873 AcrB/AcrD/AcrF family ALT831_00837 PF02321 Outer membrane efflux protein ALT831_00839 PF07676 WD40-like Beta Propeller Repeat ALT831_00839 PF00326 Prolyl oligopeptidase family ALT831_00840 PF02541 Ppx/GppA phosphatase family ALT831_00841 PF02503 Polyphosphate kinase middle domain ALT831_00841 PF13090 Polyphosphate kinase C-terminal domain 2 ALT831_00841 PF17941 Polyphosphate kinase C-terminal domain 1 ALT831_00841 PF13089 Polyphosphate kinase N-terminal domain ALT831_00842 PF01842 ACT domain ALT831_00843 PF00528 Binding-protein-dependent transport system inner membrane component ALT831_00844 PF00528 Binding-protein-dependent transport system inner membrane component ALT831_00845 PF00005 ABC transporter ALT831_00846 PF01895 PhoU domain ALT831_00847 PF01384 Phosphate transporter family ALT831_00849 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_00849 PF03466 LysR substrate binding domain ALT831_00854 PF03006 Haemolysin-III related ALT831_00856 PF01047 MarR family ALT831_00857 PF02566 OsmC-like protein ALT831_00858 PF01433 Peptidase family M1 domain ALT831_00860 PF09186 Domain of unknown function (DUF1949) ALT831_00860 PF01205 Uncharacterized protein family UPF0029 ALT831_00862 PF08447 PAS fold ALT831_00862 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_00862 PF13426 PAS domain ALT831_00864 PF03466 LysR substrate binding domain ALT831_00864 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_00865 PF00248 Aldo/keto reductase family ALT831_00867 PF03714 Bacterial pullanase-associated domain ALT831_00867 PF00128 Alpha amylase, catalytic domain ALT831_00867 PF02806 Alpha amylase, C-terminal all-beta domain ALT831_00868 PF00149 Calcineurin-like phosphoesterase ALT831_00868 PF12320 Type 5 capsule protein repressor C-terminal domain ALT831_00869 PF13476 AAA domain ALT831_00871 PF00375 Sodium:dicarboxylate symporter family ALT831_00872 PF00491 Arginase family ALT831_00873 PF01979 Amidohydrolase family ALT831_00874 PF00392 Bacterial regulatory proteins, gntR family ALT831_00874 PF07702 UTRA domain ALT831_00875 PF01175 Urocanase Rossmann-like domain ALT831_00875 PF17392 Urocanase C-terminal domain ALT831_00875 PF17391 Urocanase N-terminal domain ALT831_00876 PF00221 Aromatic amino acid lyase ALT831_00879 PF01869 BadF/BadG/BcrA/BcrD ATPase family ALT831_00880 PF01979 Amidohydrolase family ALT831_00882 PF00005 ABC transporter ALT831_00882 PF12848 ABC transporter ALT831_00888 PF00924 Mechanosensitive ion channel ALT831_00890 PF00544 Pectate lyase ALT831_00893 PF07690 Major Facilitator Superfamily ALT831_00894 PF00589 Phage integrase family ALT831_00897 PF00366 Ribosomal protein S17 ALT831_00911 PF00270 DEAD/DEAH box helicase ALT831_00911 PF08494 DEAD/H associated ALT831_00911 PF00271 Helicase conserved C-terminal domain ALT831_00915 PF03150 Di-haem cytochrome c peroxidase ALT831_00921 PF04172 LrgB-like family ALT831_00922 PF00072 Response regulator receiver domain ALT831_00927 PF06969 HemN C-terminal domain ALT831_00927 PF04055 Radical SAM superfamily ALT831_00928 PF01725 Ham1 family ALT831_00929 PF00270 DEAD/DEAH box helicase ALT831_00929 PF00271 Helicase conserved C-terminal domain ALT831_00932 PF01743 Poly A polymerase head domain ALT831_00932 PF12627 Probable RNA and SrmB- binding site of polymerase A ALT831_00933 PF01471 Putative peptidoglycan binding domain ALT831_00933 PF13401 AAA domain ALT831_00935 PF11871 Domain of unknown function (DUF3391) ALT831_00935 PF01966 HD domain ALT831_00936 PF00694 Aconitase C-terminal domain ALT831_00937 PF00330 Aconitase family (aconitate hydratase) ALT831_00938 PF00180 Isocitrate/isopropylmalate dehydrogenase ALT831_00939 PF08502 LeuA allosteric (dimerisation) domain ALT831_00939 PF00682 HMGL-like ALT831_00943 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ALT831_00943 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALT831_00944 PF14592 Chondroitinase B ALT831_00945 PF07940 Heparinase II/III-like protein ALT831_00945 PF05426 Alginate lyase ALT831_00947 PF07690 Major Facilitator Superfamily ALT831_00948 PF00294 pfkB family carbohydrate kinase ALT831_00949 PF01081 KDPG and KHG aldolase ALT831_00950 PF07729 FCD domain ALT831_00950 PF00392 Bacterial regulatory proteins, gntR family ALT831_00951 PF08787 Alginate lyase ALT831_00954 PF08787 Alginate lyase ALT831_00955 PF00113 Enolase, C-terminal TIM barrel domain ALT831_00955 PF03952 Enolase, N-terminal domain ALT831_00956 PF06418 CTP synthase N-terminus ALT831_00956 PF00117 Glutamine amidotransferase class-I ALT831_00957 PF05190 MutS family domain IV ALT831_00957 PF00488 MutS domain V ALT831_00957 PF01624 MutS domain I ALT831_00957 PF05188 MutS domain II ALT831_00957 PF05192 MutS domain III ALT831_00958 PF02464 Competence-damaged protein ALT831_00959 PF00154 recA bacterial DNA recombination protein ALT831_00960 PF00005 ABC transporter ALT831_00961 PF12679 ABC-2 family transporter protein ALT831_00964 PF00005 ABC transporter ALT831_00965 PF03379 CcmB protein ALT831_00966 PF01578 Cytochrome C assembly protein ALT831_00967 PF04995 Heme exporter protein D (CcmD) ALT831_00968 PF03100 CcmE ALT831_00969 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ALT831_00969 PF01578 Cytochrome C assembly protein ALT831_00970 PF08534 Redoxin ALT831_00971 PF03918 Cytochrome C biogenesis protein ALT831_00973 PF04333 MlaA lipoprotein ALT831_00974 PF16363 GDP-mannose 4,6 dehydratase ALT831_00976 PF00854 POT family ALT831_00978 PF00005 ABC transporter ALT831_00980 PF02563 Polysaccharide biosynthesis/export protein ALT831_00980 PF10531 SLBB domain ALT831_00982 PF00953 Glycosyl transferase family 4 ALT831_00983 PF00535 Glycosyl transferase family 2 ALT831_00985 PF00483 Nucleotidyl transferase ALT831_00986 PF10531 SLBB domain ALT831_00987 PF00180 Isocitrate/isopropylmalate dehydrogenase ALT831_00987 PF18324 Hypothetical protein TT1725 ALT831_00990 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ALT831_00990 PF03641 Possible lysine decarboxylase ALT831_00990 PF11892 Domain of unknown function (DUF3412) ALT831_00991 PF00990 Diguanylate cyclase, GGDEF domain ALT831_00992 PF14489 QueF-like protein ALT831_00992 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ALT831_00993 PF07348 Syd protein (SUKH-2) ALT831_01000 PF00849 RNA pseudouridylate synthase ALT831_01001 PF00258 Flavodoxin ALT831_01002 PF14602 Hexapeptide repeat of succinyl-transferase ALT831_01002 PF00132 Bacterial transferase hexapeptide (six repeats) ALT831_01002 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ALT831_01003 PF01909 Nucleotidyltransferase domain ALT831_01003 PF08335 GlnD PII-uridylyltransferase ALT831_01003 PF01966 HD domain ALT831_01004 PF00557 Metallopeptidase family M24 ALT831_01006 PF00318 Ribosomal protein S2 ALT831_01007 PF00889 Elongation factor TS ALT831_01008 PF00696 Amino acid kinase family ALT831_01009 PF01765 Ribosome recycling factor ALT831_01010 PF01255 Putative undecaprenyl diphosphate synthase ALT831_01012 PF13288 DXP reductoisomerase C-terminal domain ALT831_01012 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ALT831_01012 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ALT831_01013 PF17820 PDZ domain ALT831_01013 PF02163 Peptidase family M50 ALT831_01014 PF01103 Surface antigen ALT831_01014 PF07244 Surface antigen variable number repeat ALT831_01015 PF03938 Outer membrane protein (OmpH-like) ALT831_01016 PF07977 FabA-like domain ALT831_01017 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ALT831_01017 PF00132 Bacterial transferase hexapeptide (six repeats) ALT831_01018 PF02684 Lipid-A-disaccharide synthetase ALT831_01019 PF01351 Ribonuclease HII ALT831_01020 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALT831_01020 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALT831_01020 PF14579 Helix-hairpin-helix motif ALT831_01020 PF02811 PHP domain ALT831_01020 PF01336 OB-fold nucleic acid binding domain ALT831_01021 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ALT831_01022 PF01171 PP-loop family ALT831_01022 PF09179 TilS substrate binding domain ALT831_01022 PF11734 TilS substrate C-terminal domain ALT831_01023 PF03707 Bacterial signalling protein N terminal repeat ALT831_01023 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01023 PF00563 EAL domain ALT831_01024 PF00999 Sodium/hydrogen exchanger family ALT831_01024 PF02080 TrkA-C domain ALT831_01024 PF02254 TrkA-N domain ALT831_01026 PF14437 MafB19-like deaminase ALT831_01028 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALT831_01028 PF01464 Transglycosylase SLT domain ALT831_01029 PF02769 AIR synthase related protein, C-terminal domain ALT831_01029 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ALT831_01029 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ALT831_01031 PF01713 Smr domain ALT831_01039 PF01584 CheW-like domain ALT831_01039 PF00072 Response regulator receiver domain ALT831_01040 PF01739 CheR methyltransferase, SAM binding domain ALT831_01040 PF03705 CheR methyltransferase, all-alpha domain ALT831_01041 PF00460 Flagella basal body rod protein ALT831_01042 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALT831_01042 PF00460 Flagella basal body rod protein ALT831_01043 PF13861 FlgD Tudor-like domain ALT831_01043 PF13860 FlgD Ig-like domain ALT831_01043 PF03963 Flagellar hook capping protein - N-terminal region ALT831_01044 PF00460 Flagella basal body rod protein ALT831_01044 PF07559 Flagellar basal body protein FlaE ALT831_01044 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALT831_01045 PF00460 Flagella basal body rod protein ALT831_01045 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALT831_01046 PF00460 Flagella basal body rod protein ALT831_01046 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALT831_01047 PF02107 Flagellar L-ring protein ALT831_01048 PF02119 Flagellar P-ring protein ALT831_01049 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ALT831_01049 PF10135 Rod binding protein ALT831_01053 PF07196 Flagellin hook IN motif ALT831_01053 PF00669 Bacterial flagellin N-terminal helical region ALT831_01053 PF00700 Bacterial flagellin C-terminal helical region ALT831_01054 PF00700 Bacterial flagellin C-terminal helical region ALT831_01054 PF07196 Flagellin hook IN motif ALT831_01054 PF00669 Bacterial flagellin N-terminal helical region ALT831_01055 PF00700 Bacterial flagellin C-terminal helical region ALT831_01055 PF07196 Flagellin hook IN motif ALT831_01055 PF00669 Bacterial flagellin N-terminal helical region ALT831_01056 PF03646 FlaG protein ALT831_01057 PF07196 Flagellin hook IN motif ALT831_01057 PF07195 Flagellar hook-associated protein 2 C-terminus ALT831_01057 PF02465 Flagellar hook-associated protein 2 N-terminus ALT831_01058 PF02561 Flagellar protein FliS ALT831_01060 PF00535 Glycosyl transferase family 2 ALT831_01061 PF00535 Glycosyl transferase family 2 ALT831_01062 PF01370 NAD dependent epimerase/dehydratase family ALT831_01065 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ALT831_01065 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ALT831_01066 PF02348 Cytidylyltransferase ALT831_01069 PF08666 SAF domain ALT831_01069 PF03102 NeuB family ALT831_01072 PF01370 NAD dependent epimerase/dehydratase family ALT831_01073 PF16363 GDP-mannose 4,6 dehydratase ALT831_01074 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALT831_01075 PF02719 Polysaccharide biosynthesis protein ALT831_01078 PF04991 LicD family ALT831_01079 PF03102 NeuB family ALT831_01079 PF08666 SAF domain ALT831_01081 PF02348 Cytidylyltransferase ALT831_01082 PF01467 Cytidylyltransferase-like ALT831_01083 PF00700 Bacterial flagellin C-terminal helical region ALT831_01083 PF00669 Bacterial flagellin N-terminal helical region ALT831_01084 PF06490 Flagellar regulatory protein FleQ ALT831_01084 PF02954 Bacterial regulatory protein, Fis family ALT831_01084 PF00158 Sigma-54 interaction domain ALT831_01085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_01085 PF00512 His Kinase A (phospho-acceptor) domain ALT831_01085 PF13188 PAS domain ALT831_01086 PF00072 Response regulator receiver domain ALT831_01086 PF02954 Bacterial regulatory protein, Fis family ALT831_01086 PF00158 Sigma-54 interaction domain ALT831_01087 PF02049 Flagellar hook-basal body complex protein FliE ALT831_01088 PF01514 Secretory protein of YscJ/FliF family ALT831_01088 PF08345 Flagellar M-ring protein C-terminal ALT831_01089 PF14842 FliG N-terminal domain ALT831_01089 PF14841 FliG middle domain ALT831_01089 PF01706 FliG C-terminal domain ALT831_01091 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALT831_01091 PF18269 T3SS EscN ATPase C-terminal domain ALT831_01095 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALT831_01095 PF02154 Flagellar motor switch protein FliM ALT831_01096 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALT831_01097 PF04347 Flagellar biosynthesis protein, FliO ALT831_01098 PF00813 FliP family ALT831_01099 PF01313 Bacterial export proteins, family 3 ALT831_01100 PF01311 Bacterial export proteins, family 1 ALT831_01101 PF01312 FlhB HrpN YscU SpaS Family ALT831_01103 PF03734 L,D-transpeptidase catalytic domain ALT831_01104 PF00771 FHIPEP family ALT831_01105 PF00448 SRP54-type protein, GTPase domain ALT831_01106 PF10609 NUBPL iron-transfer P-loop NTPase ALT831_01107 PF04539 Sigma-70 region 3 ALT831_01107 PF04545 Sigma-70, region 4 ALT831_01107 PF04542 Sigma-70 region 2 ALT831_01108 PF00072 Response regulator receiver domain ALT831_01109 PF04344 Chemotaxis phosphatase, CheZ ALT831_01110 PF02895 Signal transducing histidine kinase, homodimeric domain ALT831_01110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_01110 PF01627 Hpt domain ALT831_01110 PF01584 CheW-like domain ALT831_01110 PF00072 Response regulator receiver domain ALT831_01111 PF00072 Response regulator receiver domain ALT831_01111 PF01339 CheB methylesterase ALT831_01112 PF13614 AAA domain ALT831_01114 PF01584 CheW-like domain ALT831_01116 PF04204 Homoserine O-succinyltransferase ALT831_01117 PF02965 Vitamin B12 dependent methionine synthase, activation domain ALT831_01117 PF00809 Pterin binding enzyme ALT831_01117 PF02574 Homocysteine S-methyltransferase ALT831_01117 PF02607 B12 binding domain ALT831_01117 PF02310 B12 binding domain ALT831_01118 PF02574 Homocysteine S-methyltransferase ALT831_01118 PF02310 B12 binding domain ALT831_01118 PF02965 Vitamin B12 dependent methionine synthase, activation domain ALT831_01118 PF02607 B12 binding domain ALT831_01118 PF00809 Pterin binding enzyme ALT831_01120 PF06865 Pyrimidine/purine nucleoside phosphorylase ALT831_01121 PF02743 Cache domain ALT831_01121 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_01121 PF00672 HAMP domain ALT831_01122 PF03466 LysR substrate binding domain ALT831_01122 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_01123 PF03466 LysR substrate binding domain ALT831_01123 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_01124 PF00484 Carbonic anhydrase ALT831_01125 PF01740 STAS domain ALT831_01125 PF00916 Sulfate permease family ALT831_01127 PF00440 Bacterial regulatory proteins, tetR family ALT831_01127 PF13977 BetI-type transcriptional repressor, C-terminal ALT831_01128 PF01431 Peptidase family M13 ALT831_01128 PF05649 Peptidase family M13 ALT831_01130 PF02631 RecX family ALT831_01131 PF01411 tRNA synthetases class II (A) ALT831_01131 PF02272 DHHA1 domain ALT831_01131 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALT831_01132 PF02599 Global regulator protein family ALT831_01136 PF03061 Thioesterase superfamily ALT831_01138 PF02436 Conserved carboxylase domain ALT831_01138 PF00364 Biotin-requiring enzyme ALT831_01138 PF00682 HMGL-like ALT831_01139 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit ALT831_01140 PF00005 ABC transporter ALT831_01141 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALT831_01141 PF00005 ABC transporter ALT831_01142 PF00528 Binding-protein-dependent transport system inner membrane component ALT831_01142 PF12911 N-terminal TM domain of oligopeptide transport permease C ALT831_01143 PF00528 Binding-protein-dependent transport system inner membrane component ALT831_01144 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALT831_01145 PF00158 Sigma-54 interaction domain ALT831_01145 PF02954 Bacterial regulatory protein, Fis family ALT831_01146 PF04012 PspA/IM30 family ALT831_01149 PF00351 Biopterin-dependent aromatic amino acid hydroxylase ALT831_01150 PF18024 Helix-turn-helix domain ALT831_01150 PF00158 Sigma-54 interaction domain ALT831_01152 PF14497 Glutathione S-transferase, C-terminal domain ALT831_01152 PF02798 Glutathione S-transferase, N-terminal domain ALT831_01153 PF01037 Lrp/AsnC ligand binding domain ALT831_01154 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALT831_01154 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALT831_01157 PF03301 Tryptophan 2,3-dioxygenase ALT831_01158 PF00593 TonB dependent receptor ALT831_01158 PF07715 TonB-dependent Receptor Plug Domain ALT831_01165 PF01618 MotA/TolQ/ExbB proton channel family ALT831_01166 PF01618 MotA/TolQ/ExbB proton channel family ALT831_01167 PF02472 Biopolymer transport protein ExbD/TolR ALT831_01168 PF03544 Gram-negative bacterial TonB protein C-terminal ALT831_01170 PF17176 tRNA-binding domain ALT831_01170 PF05127 Helicase ALT831_01170 PF13718 GNAT acetyltransferase 2 ALT831_01170 PF08351 Domain of unknown function (DUF1726) ALT831_01176 PF01636 Phosphotransferase enzyme family ALT831_01179 PF00583 Acetyltransferase (GNAT) family ALT831_01181 PF03466 LysR substrate binding domain ALT831_01181 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_01182 PF07690 Major Facilitator Superfamily ALT831_01183 PF00296 Luciferase-like monooxygenase ALT831_01184 PF00248 Aldo/keto reductase family ALT831_01187 PF13533 Biotin-lipoyl like ALT831_01188 PF01047 MarR family ALT831_01189 PF04397 LytTr DNA-binding domain ALT831_01189 PF00072 Response regulator receiver domain ALT831_01190 PF06580 Histidine kinase ALT831_01190 PF07694 5TMR of 5TMR-LYT ALT831_01191 PF02554 Carbon starvation protein CstA ALT831_01192 PF00009 Elongation factor Tu GTP binding domain ALT831_01192 PF16658 Class II release factor RF3, C-terminal domain ALT831_01192 PF03144 Elongation factor Tu domain 2 ALT831_01193 PF03485 Arginyl tRNA synthetase N terminal domain ALT831_01193 PF00750 tRNA synthetases class I (R) ALT831_01193 PF05746 DALR anticodon binding domain ALT831_01195 PF13181 Tetratricopeptide repeat ALT831_01197 PF01011 PQQ enzyme repeat ALT831_01197 PF13360 PQQ-like domain ALT831_01198 PF00196 Bacterial regulatory proteins, luxR family ALT831_01198 PF00072 Response regulator receiver domain ALT831_01200 PF00291 Pyridoxal-phosphate dependent enzyme ALT831_01203 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01204 PF04224 Protein of unknown function, DUF417 ALT831_01207 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_01207 PF03466 LysR substrate binding domain ALT831_01208 PF05368 NmrA-like family ALT831_01210 PF00487 Fatty acid desaturase ALT831_01211 PF00111 2Fe-2S iron-sulfur cluster binding domain ALT831_01211 PF00970 Oxidoreductase FAD-binding domain ALT831_01211 PF00175 Oxidoreductase NAD-binding domain ALT831_01212 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALT831_01214 PF03462 PCRF domain ALT831_01214 PF00472 RF-1 domain ALT831_01215 PF00152 tRNA synthetases class II (D, K and N) ALT831_01215 PF01336 OB-fold nucleic acid binding domain ALT831_01216 PF02558 Ketopantoate reductase PanE/ApbA ALT831_01216 PF08546 Ketopantoate reductase PanE/ApbA C terminal ALT831_01217 PF00849 RNA pseudouridylate synthase ALT831_01219 PF05193 Peptidase M16 inactive domain ALT831_01219 PF00675 Insulinase (Peptidase family M16) ALT831_01220 PF04262 Glutamate-cysteine ligase ALT831_01225 PF01713 Smr domain ALT831_01226 PF05175 Methyltransferase small domain ALT831_01227 PF01264 Chorismate synthase ALT831_01229 PF04293 SpoVR like protein ALT831_01230 PF04285 Protein of unknown function (DUF444) ALT831_01231 PF08298 PrkA AAA domain ALT831_01231 PF06798 PrkA serine protein kinase C-terminal domain ALT831_01232 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ALT831_01232 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ALT831_01233 PF00462 Glutaredoxin ALT831_01234 PF07715 TonB-dependent Receptor Plug Domain ALT831_01234 PF00593 TonB dependent receptor ALT831_01238 PF04324 BFD-like [2Fe-2S] binding domain ALT831_01239 PF10417 C-terminal domain of 1-Cys peroxiredoxin ALT831_01239 PF00578 AhpC/TSA family ALT831_01240 PF00929 Exonuclease ALT831_01241 PF00691 OmpA family ALT831_01241 PF18393 MotY N-terminal domain ALT831_01242 PF03009 Glycerophosphoryl diester phosphodiesterase family ALT831_01243 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALT831_01244 PF00106 short chain dehydrogenase ALT831_01246 PF00313 'Cold-shock' DNA-binding domain ALT831_01248 PF02225 PA domain ALT831_01248 PF04389 Peptidase family M28 ALT831_01249 PF10576 Iron-sulfur binding domain of endonuclease III ALT831_01249 PF00730 HhH-GPD superfamily base excision DNA repair protein ALT831_01249 PF00633 Helix-hairpin-helix motif ALT831_01250 PF02508 Rnf-Nqr subunit, membrane protein ALT831_01251 PF04205 FMN-binding domain ALT831_01252 PF03116 NQR2, RnfD, RnfE family ALT831_01253 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ALT831_01253 PF12838 4Fe-4S dicluster domain ALT831_01253 PF13375 RnfC Barrel sandwich hybrid domain ALT831_01253 PF10531 SLBB domain ALT831_01254 PF04060 Putative Fe-S cluster ALT831_01255 PF02508 Rnf-Nqr subunit, membrane protein ALT831_01258 PF01554 MatE ALT831_01259 PF12344 Ultra-violet resistance protein B ALT831_01259 PF02151 UvrB/uvrC motif ALT831_01259 PF04851 Type III restriction enzyme, res subunit ALT831_01259 PF17757 UvrB interaction domain ALT831_01259 PF00271 Helicase conserved C-terminal domain ALT831_01261 PF06508 Queuosine biosynthesis protein QueC ALT831_01262 PF04055 Radical SAM superfamily ALT831_01264 PF13537 Glutamine amidotransferase domain ALT831_01264 PF00733 Asparagine synthase ALT831_01268 PF02080 TrkA-C domain ALT831_01268 PF03600 Citrate transporter ALT831_01269 PF00009 Elongation factor Tu GTP binding domain ALT831_01270 PF00459 Inositol monophosphatase family ALT831_01272 PF01507 Phosphoadenosine phosphosulfate reductase family ALT831_01273 PF00474 Sodium:solute symporter family ALT831_01274 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01274 PF00072 Response regulator receiver domain ALT831_01276 PF08281 Sigma-70, region 4 ALT831_01276 PF04542 Sigma-70 region 2 ALT831_01279 PF07584 Aerotolerance regulator N-terminal ALT831_01279 PF13519 von Willebrand factor type A domain ALT831_01280 PF00092 von Willebrand factor type A domain ALT831_01282 PF01882 Protein of unknown function DUF58 ALT831_01283 PF07726 ATPase family associated with various cellular activities (AAA) ALT831_01283 PF17863 AAA lid domain ALT831_01284 PF02803 Thiolase, C-terminal domain ALT831_01284 PF00108 Thiolase, N-terminal domain ALT831_01285 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALT831_01285 PF00378 Enoyl-CoA hydratase/isomerase ALT831_01285 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALT831_01288 PF00563 EAL domain ALT831_01288 PF03707 Bacterial signalling protein N terminal repeat ALT831_01288 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01289 PF00675 Insulinase (Peptidase family M16) ALT831_01289 PF05193 Peptidase M16 inactive domain ALT831_01290 PF00300 Histidine phosphatase superfamily (branch 1) ALT831_01292 PF01595 Cyclin M transmembrane N-terminal domain ALT831_01292 PF00571 CBS domain ALT831_01292 PF03471 Transporter associated domain ALT831_01293 PF01578 Cytochrome C assembly protein ALT831_01294 PF02978 Signal peptide binding domain ALT831_01294 PF00448 SRP54-type protein, GTPase domain ALT831_01294 PF02881 SRP54-type protein, helical bundle domain ALT831_01301 PF00873 AcrB/AcrD/AcrF family ALT831_01302 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALT831_01303 PF00664 ABC transporter transmembrane region ALT831_01303 PF00005 ABC transporter ALT831_01306 PF00886 Ribosomal protein S16 ALT831_01307 PF05239 PRC-barrel domain ALT831_01307 PF01782 RimM N-terminal domain ALT831_01308 PF01746 tRNA (Guanine-1)-methyltransferase ALT831_01309 PF01245 Ribosomal protein L19 ALT831_01310 PF03458 UPF0126 domain ALT831_01311 PF00378 Enoyl-CoA hydratase/isomerase ALT831_01312 PF00793 DAHP synthetase I family ALT831_01313 PF02153 Prephenate dehydrogenase ALT831_01313 PF01817 Chorismate mutase type II ALT831_01318 PF17151 Periplasmic sensor domain ALT831_01318 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01319 PF01817 Chorismate mutase type II ALT831_01319 PF00800 Prephenate dehydratase ALT831_01320 PF00072 Response regulator receiver domain ALT831_01321 PF01253 Translation initiation factor SUI1 ALT831_01323 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01323 PF00072 Response regulator receiver domain ALT831_01325 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01325 PF03707 Bacterial signalling protein N terminal repeat ALT831_01325 PF00563 EAL domain ALT831_01327 PF00512 His Kinase A (phospho-acceptor) domain ALT831_01327 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_01329 PF00072 Response regulator receiver domain ALT831_01329 PF00158 Sigma-54 interaction domain ALT831_01332 PF01336 OB-fold nucleic acid binding domain ALT831_01332 PF02938 GAD domain ALT831_01332 PF00152 tRNA synthetases class II (D, K and N) ALT831_01333 PF00293 NUDIX domain ALT831_01334 PF02075 Crossover junction endodeoxyribonuclease RuvC ALT831_01335 PF07499 RuvA, C-terminal domain ALT831_01335 PF01330 RuvA N terminal domain ALT831_01336 PF05496 Holliday junction DNA helicase RuvB P-loop domain ALT831_01336 PF17864 RuvB AAA lid domain ALT831_01336 PF05491 RuvB C-terminal winged helix domain ALT831_01337 PF03061 Thioesterase superfamily ALT831_01338 PF01618 MotA/TolQ/ExbB proton channel family ALT831_01339 PF02472 Biopolymer transport protein ExbD/TolR ALT831_01341 PF04052 TolB amino-terminal domain ALT831_01341 PF07676 WD40-like Beta Propeller Repeat ALT831_01342 PF00691 OmpA family ALT831_01343 PF13174 Tetratricopeptide repeat ALT831_01343 PF16331 TolA binding protein trimerisation ALT831_01347 PF02445 Quinolinate synthetase A protein ALT831_01353 PF00239 Resolvase, N terminal domain ALT831_01353 PF02796 Helix-turn-helix domain of resolvase ALT831_01355 PF00075 RNase H ALT831_01359 PF01734 Patatin-like phospholipase ALT831_01360 PF02558 Ketopantoate reductase PanE/ApbA ALT831_01360 PF08546 Ketopantoate reductase PanE/ApbA C terminal ALT831_01362 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_01362 PF09308 LuxQ, periplasmic ALT831_01362 PF00072 Response regulator receiver domain ALT831_01362 PF00512 His Kinase A (phospho-acceptor) domain ALT831_01364 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALT831_01364 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALT831_01365 PF01292 Prokaryotic cytochrome b561 ALT831_01366 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01366 PF03707 Bacterial signalling protein N terminal repeat ALT831_01366 PF00563 EAL domain ALT831_01369 PF01863 Protein of unknown function DUF45 ALT831_01371 PF00873 AcrB/AcrD/AcrF family ALT831_01373 PF00440 Bacterial regulatory proteins, tetR family ALT831_01373 PF08361 MAATS-type transcriptional repressor, C-terminal region ALT831_01374 PF00593 TonB dependent receptor ALT831_01374 PF07715 TonB-dependent Receptor Plug Domain ALT831_01376 PF00873 AcrB/AcrD/AcrF family ALT831_01378 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01380 PF02470 MlaD protein ALT831_01381 PF04403 Paraquat-inducible protein A ALT831_01383 PF00152 tRNA synthetases class II (D, K and N) ALT831_01383 PF01336 OB-fold nucleic acid binding domain ALT831_01385 PF01699 Sodium/calcium exchanger protein ALT831_01386 PF08443 RimK-like ATP-grasp domain ALT831_01386 PF18030 RimK PreATP-grasp domain ALT831_01390 PF00202 Aminotransferase class-III ALT831_01391 PF06968 Biotin and Thiamin Synthesis associated domain ALT831_01391 PF04055 Radical SAM superfamily ALT831_01392 PF00155 Aminotransferase class I and II ALT831_01393 PF08241 Methyltransferase domain ALT831_01395 PF03575 Peptidase family S51 ALT831_01396 PF01451 Low molecular weight phosphotyrosine protein phosphatase ALT831_01397 PF01032 FecCD transport family ALT831_01398 PF00005 ABC transporter ALT831_01399 PF01474 Class-II DAHP synthetase family ALT831_01400 PF13493 Domain of unknown function (DUF4118) ALT831_01400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_01400 PF00512 His Kinase A (phospho-acceptor) domain ALT831_01400 PF02702 Osmosensitive K+ channel His kinase sensor domain ALT831_01401 PF00072 Response regulator receiver domain ALT831_01401 PF00486 Transcriptional regulatory protein, C terminal ALT831_01402 PF02080 TrkA-C domain ALT831_01402 PF02254 TrkA-N domain ALT831_01403 PF02386 Cation transport protein ALT831_01406 PF00664 ABC transporter transmembrane region ALT831_01406 PF00005 ABC transporter ALT831_01407 PF04055 Radical SAM superfamily ALT831_01407 PF06463 Molybdenum Cofactor Synthesis C ALT831_01409 PF00486 Transcriptional regulatory protein, C terminal ALT831_01409 PF00072 Response regulator receiver domain ALT831_01413 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALT831_01422 PF01207 Dihydrouridine synthase (Dus) ALT831_01425 PF13472 GDSL-like Lipase/Acylhydrolase family ALT831_01426 PF00005 ABC transporter ALT831_01428 PF01370 NAD dependent epimerase/dehydratase family ALT831_01428 PF08338 Domain of unknown function (DUF1731) ALT831_01429 PF02152 Dihydroneopterin aldolase ALT831_01430 PF01594 AI-2E family transporter ALT831_01431 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_01431 PF08918 PhoQ Sensor ALT831_01432 PF00486 Transcriptional regulatory protein, C terminal ALT831_01432 PF00072 Response regulator receiver domain ALT831_01435 PF03795 YCII-related domain ALT831_01436 PF00290 Tryptophan synthase alpha chain ALT831_01437 PF00291 Pyridoxal-phosphate dependent enzyme ALT831_01438 PF00218 Indole-3-glycerol phosphate synthase ALT831_01438 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ALT831_01439 PF00591 Glycosyl transferase family, a/b domain ALT831_01439 PF02885 Glycosyl transferase family, helical bundle domain ALT831_01440 PF00117 Glutamine amidotransferase class-I ALT831_01441 PF04715 Anthranilate synthase component I, N terminal region ALT831_01441 PF00425 chorismate binding enzyme ALT831_01442 PF02811 PHP domain ALT831_01443 PF01300 Telomere recombination ALT831_01444 PF02616 Segregation and condensation protein ScpA ALT831_01445 PF04079 Segregation and condensation complex subunit ScpB ALT831_01446 PF01479 S4 domain ALT831_01446 PF00849 RNA pseudouridylate synthase ALT831_01447 PF00248 Aldo/keto reductase family ALT831_01448 PF12464 Maltose acetyltransferase ALT831_01448 PF14602 Hexapeptide repeat of succinyl-transferase ALT831_01450 PF03960 ArsC family ALT831_01451 PF04286 Protein of unknown function (DUF445) ALT831_01452 PF05724 Thiopurine S-methyltransferase (TPMT) ALT831_01453 PF04355 SmpA / OmlA family ALT831_01454 PF02463 RecF/RecN/SMC N terminal domain ALT831_01455 PF00210 Ferritin-like domain ALT831_01456 PF01513 ATP-NAD kinase ALT831_01458 PF00465 Iron-containing alcohol dehydrogenase ALT831_01461 PF00561 alpha/beta hydrolase fold ALT831_01463 PF00593 TonB dependent receptor ALT831_01463 PF07715 TonB-dependent Receptor Plug Domain ALT831_01464 PF00196 Bacterial regulatory proteins, luxR family ALT831_01464 PF00072 Response regulator receiver domain ALT831_01466 PF01627 Hpt domain ALT831_01466 PF00072 Response regulator receiver domain ALT831_01466 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALT831_01466 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_01466 PF00512 His Kinase A (phospho-acceptor) domain ALT831_01468 PF01025 GrpE ALT831_01469 PF00012 Hsp70 protein ALT831_01470 PF00684 DnaJ central domain ALT831_01470 PF00226 DnaJ domain ALT831_01470 PF01556 DnaJ C terminal domain ALT831_01471 PF01322 Cytochrome C' ALT831_01474 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01474 PF00563 EAL domain ALT831_01474 PF13426 PAS domain ALT831_01475 PF16177 Acetyl-coenzyme A synthetase N-terminus ALT831_01475 PF13193 AMP-binding enzyme C-terminal domain ALT831_01475 PF00501 AMP-binding enzyme ALT831_01477 PF05173 Dihydrodipicolinate reductase, C-terminus ALT831_01477 PF01113 Dihydrodipicolinate reductase, N-terminus ALT831_01478 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ALT831_01478 PF00117 Glutamine amidotransferase class-I ALT831_01479 PF02142 MGS-like domain ALT831_01479 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALT831_01479 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ALT831_01480 PF01272 Transcription elongation factor, GreA/GreB, C-term ALT831_01480 PF03449 Transcription elongation factor, N-terminal ALT831_01481 PF12729 Four helix bundle sensory module for signal transduction ALT831_01481 PF00672 HAMP domain ALT831_01481 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_01485 PF00011 Hsp20/alpha crystallin family ALT831_01486 PF00871 Acetokinase family ALT831_01487 PF01515 Phosphate acetyl/butaryl transferase ALT831_01487 PF07085 DRTGG domain ALT831_01488 PF01979 Amidohydrolase family ALT831_01489 PF00795 Carbon-nitrogen hydrolase ALT831_01490 PF03471 Transporter associated domain ALT831_01490 PF00571 CBS domain ALT831_01491 PF02130 Uncharacterized protein family UPF0054 ALT831_01492 PF02562 PhoH-like protein ALT831_01493 PF04055 Radical SAM superfamily ALT831_01493 PF00919 Uncharacterized protein family UPF0004 ALT831_01493 PF01938 TRAM domain ALT831_01494 PF01494 FAD binding domain ALT831_01503 PF00593 TonB dependent receptor ALT831_01503 PF07715 TonB-dependent Receptor Plug Domain ALT831_01504 PF03061 Thioesterase superfamily ALT831_01505 PF01613 Flavin reductase like domain ALT831_01507 PF01235 Sodium:alanine symporter family ALT831_01516 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALT831_01517 PF01926 50S ribosome-binding GTPase ALT831_01517 PF06071 Protein of unknown function (DUF933) ALT831_01518 PF01195 Peptidyl-tRNA hydrolase ALT831_01519 PF01386 Ribosomal L25p family ALT831_01519 PF14693 Ribosomal protein TL5, C-terminal domain ALT831_01520 PF08240 Alcohol dehydrogenase GroES-like domain ALT831_01520 PF00107 Zinc-binding dehydrogenase ALT831_01522 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ALT831_01522 PF14572 Phosphoribosyl synthetase-associated domain ALT831_01524 PF00288 GHMP kinases N terminal domain ALT831_01524 PF08544 GHMP kinases C terminal ALT831_01526 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ALT831_01526 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ALT831_01526 PF01488 Shikimate / quinate 5-dehydrogenase ALT831_01527 PF00472 RF-1 domain ALT831_01527 PF03462 PCRF domain ALT831_01528 PF17827 PrmC N-terminal domain ALT831_01528 PF13847 Methyltransferase domain ALT831_01529 PF11849 Domain of unknown function (DUF3369) ALT831_01530 PF04247 Invasion gene expression up-regulator, SirB ALT831_01531 PF00793 DAHP synthetase I family ALT831_01533 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_01533 PF03466 LysR substrate binding domain ALT831_01535 PF04241 Protein of unknown function (DUF423) ALT831_01536 PF01728 FtsJ-like methyltransferase ALT831_01536 PF18125 RlmM ferredoxin-like domain ALT831_01537 PF00009 Elongation factor Tu GTP binding domain ALT831_01537 PF03144 Elongation factor Tu domain 2 ALT831_01537 PF03764 Elongation factor G, domain IV ALT831_01537 PF14492 Elongation Factor G, domain II ALT831_01537 PF00679 Elongation factor G C-terminus ALT831_01540 PF02560 Cyanate lyase C-terminal domain ALT831_01541 PF00069 Protein kinase domain ALT831_01542 PF01226 Formate/nitrite transporter ALT831_01543 PF01841 Transglutaminase-like superfamily ALT831_01543 PF11992 Domain of unknown function (DUF3488) ALT831_01543 PF13559 Domain of unknown function (DUF4129) ALT831_01545 PF17863 AAA lid domain ALT831_01545 PF07726 ATPase family associated with various cellular activities (AAA) ALT831_01546 PF03925 SeqA protein C-terminal domain ALT831_01546 PF17206 SeqA protein N-terminal domain ALT831_01547 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALT831_01547 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALT831_01547 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALT831_01547 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALT831_01548 PF00343 Carbohydrate phosphorylase ALT831_01550 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01550 PF03707 Bacterial signalling protein N terminal repeat ALT831_01550 PF00563 EAL domain ALT831_01551 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ALT831_01553 PF01906 Putative heavy-metal-binding ALT831_01554 PF00375 Sodium:dicarboxylate symporter family ALT831_01557 PF07687 Peptidase dimerisation domain ALT831_01557 PF01546 Peptidase family M20/M25/M40 ALT831_01558 PF03960 ArsC family ALT831_01563 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALT831_01564 PF04209 homogentisate 1,2-dioxygenase ALT831_01568 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01568 PF03707 Bacterial signalling protein N terminal repeat ALT831_01568 PF00563 EAL domain ALT831_01569 PF03707 Bacterial signalling protein N terminal repeat ALT831_01569 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01569 PF00563 EAL domain ALT831_01570 PF12706 Beta-lactamase superfamily domain ALT831_01571 PF00873 AcrB/AcrD/AcrF family ALT831_01573 PF00999 Sodium/hydrogen exchanger family ALT831_01573 PF02254 TrkA-N domain ALT831_01574 PF02525 Flavodoxin-like fold ALT831_01577 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALT831_01578 PF00111 2Fe-2S iron-sulfur cluster binding domain ALT831_01578 PF01799 [2Fe-2S] binding domain ALT831_01579 PF01638 HxlR-like helix-turn-helix ALT831_01581 PF13426 PAS domain ALT831_01581 PF08448 PAS fold ALT831_01581 PF08447 PAS fold ALT831_01581 PF05231 MASE1 ALT831_01581 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01581 PF00563 EAL domain ALT831_01583 PF01979 Amidohydrolase family ALT831_01584 PF00576 HIUase/Transthyretin family ALT831_01587 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALT831_01587 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALT831_01588 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALT831_01588 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALT831_01588 PF00111 2Fe-2S iron-sulfur cluster binding domain ALT831_01588 PF01799 [2Fe-2S] binding domain ALT831_01589 PF08362 YcdC-like protein, C-terminal region ALT831_01589 PF00440 Bacterial regulatory proteins, tetR family ALT831_01592 PF00860 Permease family ALT831_01593 PF00962 Adenosine/AMP deaminase ALT831_01595 PF00563 EAL domain ALT831_01595 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01595 PF03707 Bacterial signalling protein N terminal repeat ALT831_01596 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01596 PF00072 Response regulator receiver domain ALT831_01597 PF00512 His Kinase A (phospho-acceptor) domain ALT831_01597 PF09308 LuxQ, periplasmic ALT831_01597 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_01597 PF00072 Response regulator receiver domain ALT831_01599 PF07715 TonB-dependent Receptor Plug Domain ALT831_01599 PF00593 TonB dependent receptor ALT831_01600 PF00860 Permease family ALT831_01601 PF00962 Adenosine/AMP deaminase ALT831_01603 PF07687 Peptidase dimerisation domain ALT831_01603 PF01546 Peptidase family M20/M25/M40 ALT831_01604 PF00266 Aminotransferase class-V ALT831_01605 PF01925 Sulfite exporter TauE/SafE ALT831_01607 PF01425 Amidase ALT831_01614 PF03881 Fructosamine kinase ALT831_01615 PF03129 Anticodon binding domain ALT831_01615 PF02824 TGS domain ALT831_01615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALT831_01615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALT831_01616 PF00707 Translation initiation factor IF-3, C-terminal domain ALT831_01616 PF05198 Translation initiation factor IF-3, N-terminal domain ALT831_01617 PF01632 Ribosomal protein L35 ALT831_01618 PF00453 Ribosomal protein L20 ALT831_01619 PF00483 Nucleotidyl transferase ALT831_01619 PF01050 Mannose-6-phosphate isomerase ALT831_01620 PF02397 Bacterial sugar transferase ALT831_01622 PF18412 Outer-membrane lipoprotein Wza C-terminal domain ALT831_01622 PF10531 SLBB domain ALT831_01622 PF02563 Polysaccharide biosynthesis/export protein ALT831_01623 PF13614 AAA domain ALT831_01629 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01629 PF03707 Bacterial signalling protein N terminal repeat ALT831_01629 PF00563 EAL domain ALT831_01631 PF13439 Glycosyltransferase Family 4 ALT831_01631 PF00534 Glycosyl transferases group 1 ALT831_01633 PF06426 Serine acetyltransferase, N-terminal ALT831_01633 PF00132 Bacterial transferase hexapeptide (six repeats) ALT831_01636 PF00535 Glycosyl transferase family 2 ALT831_01637 PF00535 Glycosyl transferase family 2 ALT831_01639 PF00534 Glycosyl transferases group 1 ALT831_01640 PF04230 Polysaccharide pyruvyl transferase ALT831_01644 PF00534 Glycosyl transferases group 1 ALT831_01645 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ALT831_01645 PF01409 tRNA synthetases class II core domain (F) ALT831_01646 PF03483 B3/4 domain ALT831_01646 PF03484 tRNA synthetase B5 domain ALT831_01646 PF03147 Ferredoxin-fold anticodon binding domain ALT831_01646 PF01588 Putative tRNA binding domain ALT831_01646 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ALT831_01647 PF00216 Bacterial DNA-binding protein ALT831_01649 PF04073 Aminoacyl-tRNA editing domain ALT831_01650 PF01804 Penicillin amidase ALT831_01651 PF00933 Glycosyl hydrolase family 3 N terminal domain ALT831_01652 PF01923 Cobalamin adenosyltransferase ALT831_01654 PF17757 UvrB interaction domain ALT831_01654 PF03461 TRCF domain ALT831_01654 PF02559 CarD-like/TRCF domain ALT831_01654 PF00270 DEAD/DEAH box helicase ALT831_01654 PF00271 Helicase conserved C-terminal domain ALT831_01656 PF02687 FtsX-like permease family ALT831_01656 PF12704 MacB-like periplasmic core domain ALT831_01658 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_01658 PF08448 PAS fold ALT831_01658 PF13188 PAS domain ALT831_01658 PF00072 Response regulator receiver domain ALT831_01658 PF00512 His Kinase A (phospho-acceptor) domain ALT831_01661 PF03372 Endonuclease/Exonuclease/phosphatase family ALT831_01668 PF07690 Major Facilitator Superfamily ALT831_01670 PF00483 Nucleotidyl transferase ALT831_01674 PF00682 HMGL-like ALT831_01675 PF00364 Biotin-requiring enzyme ALT831_01675 PF18140 Propionyl-coenzyme A carboxylase BT domain ALT831_01675 PF02785 Biotin carboxylase C-terminal domain ALT831_01675 PF00289 Biotin carboxylase, N-terminal domain ALT831_01675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALT831_01676 PF00378 Enoyl-CoA hydratase/isomerase ALT831_01677 PF01039 Carboxyl transferase domain ALT831_01678 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALT831_01678 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALT831_01678 PF02770 Acyl-CoA dehydrogenase, middle domain ALT831_01679 PF13411 MerR HTH family regulatory protein ALT831_01680 PF02803 Thiolase, C-terminal domain ALT831_01680 PF00108 Thiolase, N-terminal domain ALT831_01682 PF00266 Aminotransferase class-V ALT831_01685 PF00929 Exonuclease ALT831_01685 PF08411 Exonuclease C-terminal ALT831_01686 PF01627 Hpt domain ALT831_01686 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_01686 PF00672 HAMP domain ALT831_01686 PF00512 His Kinase A (phospho-acceptor) domain ALT831_01686 PF00072 Response regulator receiver domain ALT831_01686 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALT831_01687 PF01112 Asparaginase ALT831_01689 PF02333 Phytase ALT831_01692 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ALT831_01692 PF12833 Helix-turn-helix domain ALT831_01694 PF04408 Helicase associated domain (HA2) ALT831_01694 PF00271 Helicase conserved C-terminal domain ALT831_01694 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ALT831_01694 PF11898 Domain of unknown function (DUF3418) ALT831_01694 PF00270 DEAD/DEAH box helicase ALT831_01697 PF10672 S-adenosylmethionine-dependent methyltransferase ALT831_01697 PF17785 PUA-like domain ALT831_01698 PF14765 Polyketide synthase dehydratase ALT831_01698 PF00550 Phosphopantetheine attachment site ALT831_01698 PF00109 Beta-ketoacyl synthase, N-terminal domain ALT831_01698 PF02801 Beta-ketoacyl synthase, C-terminal domain ALT831_01698 PF00698 Acyl transferase domain ALT831_01698 PF08240 Alcohol dehydrogenase GroES-like domain ALT831_01698 PF16197 Ketoacyl-synthetase C-terminal extension ALT831_01698 PF08659 KR domain ALT831_01699 PF00075 RNase H ALT831_01700 PF00929 Exonuclease ALT831_01706 PF00563 EAL domain ALT831_01706 PF12792 CSS motif domain associated with EAL ALT831_01707 PF00005 ABC transporter ALT831_01708 PF12704 MacB-like periplasmic core domain ALT831_01708 PF02687 FtsX-like permease family ALT831_01709 PF00375 Sodium:dicarboxylate symporter family ALT831_01711 PF04996 Succinylarginine dihydrolase ALT831_01712 PF01396 Topoisomerase DNA binding C4 zinc finger ALT831_01712 PF08272 Topoisomerase I zinc-ribbon-like ALT831_01712 PF01131 DNA topoisomerase ALT831_01712 PF01751 Toprim domain ALT831_01713 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ALT831_01715 PF03466 LysR substrate binding domain ALT831_01715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_01716 PF12804 MobA-like NTP transferase domain ALT831_01717 PF02634 FdhD/NarQ family ALT831_01718 PF00384 Molybdopterin oxidoreductase ALT831_01720 PF02798 Glutathione S-transferase, N-terminal domain ALT831_01722 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_01722 PF03466 LysR substrate binding domain ALT831_01723 PF13673 Acetyltransferase (GNAT) domain ALT831_01724 PF13419 Haloacid dehalogenase-like hydrolase ALT831_01725 PF00072 Response regulator receiver domain ALT831_01725 PF00486 Transcriptional regulatory protein, C terminal ALT831_01726 PF00512 His Kinase A (phospho-acceptor) domain ALT831_01726 PF00989 PAS fold ALT831_01726 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_01726 PF00672 HAMP domain ALT831_01726 PF18698 Histidine kinase sensor domain ALT831_01728 PF10150 Ribonuclease E/G family ALT831_01728 PF00575 S1 RNA binding domain ALT831_01728 PF12111 Polyribonucleotide phosphorylase C terminal ALT831_01729 PF00849 RNA pseudouridylate synthase ALT831_01729 PF01479 S4 domain ALT831_01730 PF13419 Haloacid dehalogenase-like hydrolase ALT831_01731 PF02545 Maf-like protein ALT831_01732 PF02620 Large ribosomal RNA subunit accumulation protein YceD ALT831_01733 PF01783 Ribosomal L32p protein family ALT831_01734 PF02504 Fatty acid synthesis protein ALT831_01735 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALT831_01735 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALT831_01736 PF00698 Acyl transferase domain ALT831_01738 PF00550 Phosphopantetheine attachment site ALT831_01739 PF00109 Beta-ketoacyl synthase, N-terminal domain ALT831_01739 PF02801 Beta-ketoacyl synthase, C-terminal domain ALT831_01740 PF01063 Amino-transferase class IV ALT831_01741 PF02618 YceG-like family ALT831_01742 PF02223 Thymidylate kinase ALT831_01743 PF09115 DNA polymerase III, delta subunit, C terminal ALT831_01744 PF01026 TatD related DNase ALT831_01745 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ALT831_01745 PF01243 Pyridoxamine 5'-phosphate oxidase ALT831_01746 PF13460 NAD(P)H-binding ALT831_01747 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01747 PF08448 PAS fold ALT831_01753 PF00561 alpha/beta hydrolase fold ALT831_01754 PF00378 Enoyl-CoA hydratase/isomerase ALT831_01754 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALT831_01754 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALT831_01755 PF02803 Thiolase, C-terminal domain ALT831_01755 PF00108 Thiolase, N-terminal domain ALT831_01756 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALT831_01756 PF12806 Acetyl-CoA dehydrogenase C-terminal like ALT831_01756 PF02770 Acyl-CoA dehydrogenase, middle domain ALT831_01756 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALT831_01757 PF00561 alpha/beta hydrolase fold ALT831_01760 PF04198 Putative sugar-binding domain ALT831_01761 PF13419 Haloacid dehalogenase-like hydrolase ALT831_01763 PF01232 Mannitol dehydrogenase Rossmann domain ALT831_01763 PF08125 Mannitol dehydrogenase C-terminal domain ALT831_01766 PF01979 Amidohydrolase family ALT831_01767 PF07683 Cobalamin synthesis protein cobW C-terminal domain ALT831_01767 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALT831_01768 PF01565 FAD binding domain ALT831_01768 PF13183 4Fe-4S dicluster domain ALT831_01768 PF02913 FAD linked oxidases, C-terminal domain ALT831_01770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_01770 PF03466 LysR substrate binding domain ALT831_01771 PF01575 MaoC like domain ALT831_01773 PF00924 Mechanosensitive ion channel ALT831_01774 PF07715 TonB-dependent Receptor Plug Domain ALT831_01774 PF00593 TonB dependent receptor ALT831_01775 PF01329 Pterin 4 alpha carbinolamine dehydratase ALT831_01779 PF01627 Hpt domain ALT831_01779 PF00072 Response regulator receiver domain ALT831_01779 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_01779 PF00512 His Kinase A (phospho-acceptor) domain ALT831_01780 PF00072 Response regulator receiver domain ALT831_01781 PF17384 RimP C-terminal SH3 domain ALT831_01781 PF02576 RimP N-terminal domain ALT831_01782 PF13184 NusA-like KH domain ALT831_01782 PF08529 NusA N-terminal domain ALT831_01782 PF00575 S1 RNA binding domain ALT831_01783 PF00009 Elongation factor Tu GTP binding domain ALT831_01783 PF11987 Translation-initiation factor 2 ALT831_01783 PF08364 Bacterial translation initiation factor IF-2 associated region ALT831_01783 PF04760 Translation initiation factor IF-2, N-terminal region ALT831_01784 PF02033 Ribosome-binding factor A ALT831_01785 PF09157 Pseudouridine synthase II TruB, C-terminal ALT831_01785 PF16198 tRNA pseudouridylate synthase B C-terminal domain ALT831_01785 PF01509 TruB family pseudouridylate synthase (N terminal domain) ALT831_01788 PF00312 Ribosomal protein S15 ALT831_01789 PF03707 Bacterial signalling protein N terminal repeat ALT831_01789 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01789 PF00563 EAL domain ALT831_01790 PF00849 RNA pseudouridylate synthase ALT831_01790 PF01479 S4 domain ALT831_01792 PF00583 Acetyltransferase (GNAT) family ALT831_01792 PF00795 Carbon-nitrogen hydrolase ALT831_01799 PF10417 C-terminal domain of 1-Cys peroxiredoxin ALT831_01799 PF00578 AhpC/TSA family ALT831_01800 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALT831_01800 PF13192 Thioredoxin domain ALT831_01801 PF00593 TonB dependent receptor ALT831_01801 PF07715 TonB-dependent Receptor Plug Domain ALT831_01809 PF11842 Domain of unknown function (DUF3362) ALT831_01809 PF04055 Radical SAM superfamily ALT831_01809 PF08497 Radical SAM N-terminal ALT831_01812 PF00593 TonB dependent receptor ALT831_01812 PF07715 TonB-dependent Receptor Plug Domain ALT831_01813 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALT831_01813 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALT831_01815 PF13416 Bacterial extracellular solute-binding protein ALT831_01817 PF00005 ABC transporter ALT831_01818 PF01066 CDP-alcohol phosphatidyltransferase ALT831_01820 PF01223 DNA/RNA non-specific endonuclease ALT831_01821 PF08240 Alcohol dehydrogenase GroES-like domain ALT831_01821 PF00107 Zinc-binding dehydrogenase ALT831_01826 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_01826 PF03466 LysR substrate binding domain ALT831_01828 PF07715 TonB-dependent Receptor Plug Domain ALT831_01828 PF00593 TonB dependent receptor ALT831_01831 PF00005 ABC transporter ALT831_01835 PF12167 Arm DNA-binding domain ALT831_01835 PF00589 Phage integrase family ALT831_01839 PF02810 SEC-C motif ALT831_01843 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALT831_01844 PF01668 SmpB protein ALT831_01845 PF03364 Polyketide cyclase / dehydrase and lipid transport ALT831_01846 PF03658 RnfH family Ubiquitin ALT831_01848 PF02028 BCCT, betaine/carnitine/choline family transporter ALT831_01849 PF00593 TonB dependent receptor ALT831_01849 PF07715 TonB-dependent Receptor Plug Domain ALT831_01850 PF13181 Tetratricopeptide repeat ALT831_01853 PF03618 Kinase/pyrophosphorylase ALT831_01854 PF00391 PEP-utilising enzyme, mobile domain ALT831_01854 PF02896 PEP-utilising enzyme, TIM barrel domain ALT831_01854 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ALT831_01857 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALT831_01858 PF01799 [2Fe-2S] binding domain ALT831_01858 PF00111 2Fe-2S iron-sulfur cluster binding domain ALT831_01862 PF08007 Cupin superfamily protein ALT831_01863 PF00211 Adenylate and Guanylate cyclase catalytic domain ALT831_01864 PF08328 Adenylosuccinate lyase C-terminal ALT831_01864 PF00206 Lyase ALT831_01865 PF04356 Protein of unknown function (DUF489) ALT831_01867 PF00849 RNA pseudouridylate synthase ALT831_01868 PF03971 Monomeric isocitrate dehydrogenase ALT831_01870 PF00313 'Cold-shock' DNA-binding domain ALT831_01871 PF02617 ATP-dependent Clp protease adaptor protein ClpS ALT831_01872 PF10431 C-terminal, D2-small domain, of ClpB protein ALT831_01872 PF17871 AAA lid domain ALT831_01872 PF07724 AAA domain (Cdc48 subfamily) ALT831_01872 PF00004 ATPase family associated with various cellular activities (AAA) ALT831_01872 PF02861 Clp amino terminal domain, pathogenicity island component ALT831_01873 PF01176 Translation initiation factor 1A / IF-1 ALT831_01874 PF04377 Arginine-tRNA-protein transferase, C terminus ALT831_01874 PF04376 Arginine-tRNA-protein transferase, N terminus ALT831_01875 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ALT831_01876 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALT831_01877 PF04217 Protein of unknown function, DUF412 ALT831_01878 PF01343 Peptidase family S49 ALT831_01880 PF00881 Nitroreductase family ALT831_01882 PF00710 Asparaginase, N-terminal ALT831_01882 PF17763 Glutaminase/Asparaginase C-terminal domain ALT831_01883 PF04055 Radical SAM superfamily ALT831_01883 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ALT831_01884 PF03099 Biotin/lipoate A/B protein ligase family ALT831_01885 PF04359 Protein of unknown function (DUF493) ALT831_01886 PF07943 Penicillin-binding protein 5, C-terminal domain ALT831_01886 PF00768 D-alanyl-D-alanine carboxypeptidase ALT831_01887 PF03330 Lytic transglycolase ALT831_01887 PF05036 Sporulation related domain ALT831_01888 PF01098 Cell cycle protein ALT831_01889 PF03717 Penicillin-binding Protein dimerisation domain ALT831_01889 PF00905 Penicillin binding protein transpeptidase domain ALT831_01890 PF02590 Predicted SPOUT methyltransferase ALT831_01892 PF01467 Cytidylyltransferase-like ALT831_01893 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ALT831_01893 PF06144 DNA polymerase III, delta subunit ALT831_01894 PF04390 Lipopolysaccharide-assembly ALT831_01895 PF08264 Anticodon-binding domain of tRNA ALT831_01895 PF00133 tRNA synthetases class I (I, L, M and V) ALT831_01895 PF13603 Leucyl-tRNA synthetase, Domain 2 ALT831_01897 PF13654 AAA domain ALT831_01897 PF05362 Lon protease (S16) C-terminal proteolytic domain ALT831_01900 PF00106 short chain dehydrogenase ALT831_01901 PF01985 CRS1 / YhbY (CRM) domain ALT831_01902 PF01728 FtsJ-like methyltransferase ALT831_01903 PF00004 ATPase family associated with various cellular activities (AAA) ALT831_01903 PF06480 FtsH Extracellular ALT831_01903 PF01434 Peptidase family M41 ALT831_01903 PF17862 AAA+ lid domain ALT831_01904 PF00809 Pterin binding enzyme ALT831_01905 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALT831_01905 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALT831_01905 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALT831_01905 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALT831_01906 PF00121 Triosephosphate isomerase ALT831_01907 PF03840 Preprotein translocase SecG subunit ALT831_01909 PF00563 EAL domain ALT831_01909 PF00990 Diguanylate cyclase, GGDEF domain ALT831_01909 PF03707 Bacterial signalling protein N terminal repeat ALT831_01910 PF01679 Proteolipid membrane potential modulator ALT831_01912 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALT831_01912 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALT831_01913 PF02142 MGS-like domain ALT831_01913 PF00781 Diacylglycerol kinase catalytic domain ALT831_01919 PF00474 Sodium:solute symporter family ALT831_01920 PF00696 Amino acid kinase family ALT831_01921 PF00171 Aldehyde dehydrogenase family ALT831_01924 PF00013 KH domain ALT831_01924 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ALT831_01924 PF01138 3' exoribonuclease family, domain 1 ALT831_01924 PF03725 3' exoribonuclease family, domain 2 ALT831_01924 PF00575 S1 RNA binding domain ALT831_01928 PF01548 Transposase ALT831_01928 PF02371 Transposase IS116/IS110/IS902 family ALT831_01932 PF01048 Phosphorylase superfamily ALT831_01941 PF18337 RapA N-terminal Tudor like domain ALT831_01941 PF00271 Helicase conserved C-terminal domain ALT831_01941 PF12137 RNA polymerase recycling family C-terminal ALT831_01941 PF00176 SNF2 family N-terminal domain ALT831_01941 PF18339 RapA N-terminal Tudor like domain 1 ALT831_01943 PF02567 Phenazine biosynthesis-like protein ALT831_01957 PF07690 Major Facilitator Superfamily ALT831_01960 PF03544 Gram-negative bacterial TonB protein C-terminal ALT831_01964 PF13181 Tetratricopeptide repeat ALT831_01964 PF07719 Tetratricopeptide repeat ALT831_01967 PF02463 RecF/RecN/SMC N terminal domain ALT831_01967 PF06470 SMC proteins Flexible Hinge Domain ALT831_01968 PF04354 ZipA, C-terminal FtsZ-binding domain ALT831_01969 PF12826 Helix-hairpin-helix motif ALT831_01969 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ALT831_01969 PF03120 NAD-dependent DNA ligase OB-fold domain ALT831_01969 PF01653 NAD-dependent DNA ligase adenylation domain ALT831_01969 PF00533 BRCA1 C Terminus (BRCT) domain ALT831_01973 PF00005 ABC transporter ALT831_01973 PF00664 ABC transporter transmembrane region ALT831_01974 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ALT831_01975 PF03966 Trm112p-like protein ALT831_01976 PF02348 Cytidylyltransferase ALT831_01977 PF00106 short chain dehydrogenase ALT831_01978 PF04055 Radical SAM superfamily ALT831_01978 PF18693 TRAM domain ALT831_01978 PF00919 Uncharacterized protein family UPF0004 ALT831_01981 PF00899 ThiF family ALT831_01982 PF13409 Glutathione S-transferase, N-terminal domain ALT831_01983 PF02678 Pirin ALT831_01983 PF05726 Pirin C-terminal cupin domain ALT831_01985 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALT831_01985 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALT831_01985 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALT831_01985 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALT831_01988 PF00285 Citrate synthase, C-terminal domain ALT831_01989 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ALT831_01990 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ALT831_01991 PF00890 FAD binding domain ALT831_01991 PF02910 Fumarate reductase flavoprotein C-term ALT831_01992 PF13085 2Fe-2S iron-sulfur cluster binding domain ALT831_01993 PF02779 Transketolase, pyrimidine binding domain ALT831_01993 PF16870 2-oxoglutarate dehydrogenase C-terminal ALT831_01993 PF00676 Dehydrogenase E1 component ALT831_01993 PF16078 2-oxoglutarate dehydrogenase N-terminus ALT831_01994 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALT831_01994 PF00364 Biotin-requiring enzyme ALT831_01994 PF02817 e3 binding domain ALT831_01995 PF08442 ATP-grasp domain ALT831_01995 PF00549 CoA-ligase ALT831_01996 PF02629 CoA binding domain ALT831_01996 PF00549 CoA-ligase ALT831_01998 PF04820 Tryptophan halogenase ALT831_02000 PF18494 Pullulanase Ins domain ALT831_02000 PF17967 Pullulanase N2 domain ALT831_02000 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ALT831_02000 PF11852 Domain of unknown function (DUF3372) ALT831_02000 PF03714 Bacterial pullanase-associated domain ALT831_02001 PF01734 Patatin-like phospholipase ALT831_02004 PF02903 Alpha amylase, N-terminal ig-like domain ALT831_02004 PF00128 Alpha amylase, catalytic domain ALT831_02004 PF16657 Maltogenic Amylase, C-terminal domain ALT831_02005 PF00128 Alpha amylase, catalytic domain ALT831_02005 PF09087 Cyclomaltodextrinase, N-terminal ALT831_02005 PF10438 Cyclo-malto-dextrinase C-terminal domain ALT831_02007 PF00686 Starch binding domain ALT831_02007 PF01833 IPT/TIG domain ALT831_02007 PF00128 Alpha amylase, catalytic domain ALT831_02007 PF02806 Alpha amylase, C-terminal all-beta domain ALT831_02008 PF00356 Bacterial regulatory proteins, lacI family ALT831_02009 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALT831_02009 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ALT831_02010 PF00106 short chain dehydrogenase ALT831_02011 PF12262 Bacterial virulence factor lipase N-terminal ALT831_02012 PF01804 Penicillin amidase ALT831_02013 PF08496 Peptidase family S49 N-terminal ALT831_02013 PF01343 Peptidase family S49 ALT831_02016 PF01784 NIF3 (NGG1p interacting factor 3) ALT831_02018 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALT831_02018 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALT831_02019 PF00255 Glutathione peroxidase ALT831_02020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALT831_02020 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALT831_02022 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALT831_02022 PF02770 Acyl-CoA dehydrogenase, middle domain ALT831_02022 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALT831_02023 PF00378 Enoyl-CoA hydratase/isomerase ALT831_02024 PF13847 Methyltransferase domain ALT831_02025 PF11893 Domain of unknown function (DUF3413) ALT831_02025 PF00884 Sulfatase ALT831_02026 PF07208 Protein of unknown function (DUF1414) ALT831_02027 PF04245 37-kD nucleoid-associated bacterial protein ALT831_02029 PF01464 Transglycosylase SLT domain ALT831_02029 PF10145 Phage-related minor tail protein ALT831_02029 PF01551 Peptidase family M23 ALT831_02033 PF06580 Histidine kinase ALT831_02033 PF07694 5TMR of 5TMR-LYT ALT831_02034 PF04397 LytTr DNA-binding domain ALT831_02034 PF00072 Response regulator receiver domain ALT831_02035 PF00365 Phosphofructokinase ALT831_02038 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_02038 PF00512 His Kinase A (phospho-acceptor) domain ALT831_02038 PF01627 Hpt domain ALT831_02038 PF00989 PAS fold ALT831_02038 PF00072 Response regulator receiver domain ALT831_02038 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALT831_02040 PF17773 UPF0176 acylphosphatase like domain ALT831_02040 PF00581 Rhodanese-like domain ALT831_02049 PF00271 Helicase conserved C-terminal domain ALT831_02049 PF00270 DEAD/DEAH box helicase ALT831_02050 PF01144 Coenzyme A transferase ALT831_02051 PF01144 Coenzyme A transferase ALT831_02052 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_02052 PF03466 LysR substrate binding domain ALT831_02055 PF03466 LysR substrate binding domain ALT831_02055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_02056 PF03315 Serine dehydratase beta chain ALT831_02056 PF03313 Serine dehydratase alpha chain ALT831_02057 PF00293 NUDIX domain ALT831_02058 PF00425 chorismate binding enzyme ALT831_02058 PF04715 Anthranilate synthase component I, N terminal region ALT831_02060 PF02646 RmuC family ALT831_02061 PF13860 FlgD Ig-like domain ALT831_02061 PF05922 Peptidase inhibitor I9 ALT831_02061 PF02225 PA domain ALT831_02061 PF00082 Subtilase family ALT831_02062 PF00676 Dehydrogenase E1 component ALT831_02063 PF02779 Transketolase, pyrimidine binding domain ALT831_02063 PF02780 Transketolase, C-terminal domain ALT831_02064 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALT831_02064 PF00364 Biotin-requiring enzyme ALT831_02064 PF02817 e3 binding domain ALT831_02065 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ALT831_02066 PF00069 Protein kinase domain ALT831_02068 PF00132 Bacterial transferase hexapeptide (six repeats) ALT831_02070 PF00266 Aminotransferase class-V ALT831_02072 PF13185 GAF domain ALT831_02074 PF04352 ProQ/FINO family ALT831_02074 PF17516 ProQ C-terminal domain ALT831_02075 PF11818 C-terminal domain of tail specific protease (DUF3340) ALT831_02075 PF00595 PDZ domain ALT831_02075 PF03572 Peptidase family S41 ALT831_02075 PF17804 Tail specific protease N-terminal domain ALT831_02076 PF00209 Sodium:neurotransmitter symporter family ALT831_02077 PF03553 Na+/H+ antiporter family ALT831_02078 PF11940 Domain of unknown function (DUF3458) Ig-like fold ALT831_02078 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ALT831_02078 PF01433 Peptidase family M1 domain ALT831_02081 PF07044 Protein of unknown function (DUF1329) ALT831_02084 PF05088 Bacterial NAD-glutamate dehydrogenase ALT831_02085 PF01180 Dihydroorotate dehydrogenase ALT831_02086 PF02926 THUMP domain ALT831_02086 PF01170 Putative RNA methylase family UPF0020 ALT831_02086 PF10672 S-adenosylmethionine-dependent methyltransferase ALT831_02088 PF00005 ABC transporter ALT831_02088 PF16326 ABC transporter C-terminal domain ALT831_02088 PF12848 ABC transporter ALT831_02090 PF04957 Ribosome modulation factor ALT831_02091 PF07977 FabA-like domain ALT831_02093 PF00875 DNA photolyase ALT831_02093 PF03441 FAD binding domain of DNA photolyase ALT831_02094 PF00875 DNA photolyase ALT831_02094 PF03441 FAD binding domain of DNA photolyase ALT831_02095 PF00875 DNA photolyase ALT831_02095 PF03441 FAD binding domain of DNA photolyase ALT831_02096 PF04244 Deoxyribodipyrimidine photo-lyase-related protein ALT831_02098 PF16123 Hydroxyacylglutathione hydrolase C-terminus ALT831_02098 PF00753 Metallo-beta-lactamase superfamily ALT831_02099 PF00589 Phage integrase family ALT831_02099 PF02899 Phage integrase, N-terminal SAM-like domain ALT831_02101 PF01219 Prokaryotic diacylglycerol kinase ALT831_02102 PF00582 Universal stress protein family ALT831_02104 PF01645 Conserved region in glutamate synthase ALT831_02105 PF00999 Sodium/hydrogen exchanger family ALT831_02106 PF00210 Ferritin-like domain ALT831_02107 PF00210 Ferritin-like domain ALT831_02109 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALT831_02112 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ALT831_02112 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALT831_02114 PF00403 Heavy-metal-associated domain ALT831_02117 PF13545 Crp-like helix-turn-helix domain ALT831_02117 PF00027 Cyclic nucleotide-binding domain ALT831_02118 PF00582 Universal stress protein family ALT831_02119 PF01171 PP-loop family ALT831_02120 PF01734 Patatin-like phospholipase ALT831_02124 PF01810 LysE type translocator ALT831_02125 PF02146 Sir2 family ALT831_02126 PF00581 Rhodanese-like domain ALT831_02127 PF08534 Redoxin ALT831_02128 PF03942 DTW domain ALT831_02132 PF01066 CDP-alcohol phosphatidyltransferase ALT831_02133 PF01541 GIY-YIG catalytic domain ALT831_02133 PF02151 UvrB/uvrC motif ALT831_02133 PF08459 UvrC Helix-hairpin-helix N-terminal ALT831_02134 PF00196 Bacterial regulatory proteins, luxR family ALT831_02134 PF00072 Response regulator receiver domain ALT831_02135 PF17954 Quercetinase C-terminal cupin domain ALT831_02135 PF02678 Pirin ALT831_02136 PF00155 Aminotransferase class I and II ALT831_02137 PF12867 DinB superfamily ALT831_02137 PF03781 Sulfatase-modifying factor enzyme 1 ALT831_02141 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ALT831_02142 PF07681 DoxX ALT831_02143 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_02143 PF03466 LysR substrate binding domain ALT831_02146 PF01027 Inhibitor of apoptosis-promoting Bax1 ALT831_02147 PF02635 DsrE/DsrF-like family ALT831_02150 PF04358 DsrC like protein ALT831_02154 PF07715 TonB-dependent Receptor Plug Domain ALT831_02154 PF00593 TonB dependent receptor ALT831_02154 PF00593 TonB dependent receptor ALT831_02154 PF07715 TonB-dependent Receptor Plug Domain ALT831_02155 PF02403 Seryl-tRNA synthetase N-terminal domain ALT831_02155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALT831_02156 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ALT831_02157 PF00004 ATPase family associated with various cellular activities (AAA) ALT831_02157 PF16193 AAA C-terminal domain ALT831_02157 PF12002 MgsA AAA+ ATPase C terminal ALT831_02158 PF03548 Outer membrane lipoprotein carrier protein LolA ALT831_02159 PF09397 Ftsk gamma domain ALT831_02159 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ALT831_02159 PF01580 FtsK/SpoIIIE family ALT831_02159 PF17854 FtsK alpha domain ALT831_02160 PF01037 Lrp/AsnC ligand binding domain ALT831_02162 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ALT831_02162 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ALT831_02163 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ALT831_02164 PF18073 Rubredoxin metal binding domain ALT831_02168 PF00216 Bacterial DNA-binding protein ALT831_02169 PF00575 S1 RNA binding domain ALT831_02170 PF02224 Cytidylate kinase ALT831_02171 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALT831_02172 PF00266 Aminotransferase class-V ALT831_02173 PF00521 DNA gyrase/topoisomerase IV, subunit A ALT831_02173 PF03989 DNA gyrase C-terminal domain, beta-propeller ALT831_02175 PF02867 Ribonucleotide reductase, barrel domain ALT831_02175 PF00317 Ribonucleotide reductase, all-alpha domain ALT831_02175 PF03477 ATP cone domain ALT831_02176 PF00268 Ribonucleotide reductase, small chain ALT831_02177 PF00111 2Fe-2S iron-sulfur cluster binding domain ALT831_02178 PF00106 short chain dehydrogenase ALT831_02181 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALT831_02181 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALT831_02182 PF00563 EAL domain ALT831_02182 PF00990 Diguanylate cyclase, GGDEF domain ALT831_02182 PF03707 Bacterial signalling protein N terminal repeat ALT831_02183 PF00990 Diguanylate cyclase, GGDEF domain ALT831_02184 PF00892 EamA-like transporter family ALT831_02185 PF01259 SAICAR synthetase ALT831_02186 PF06804 NlpB/DapX lipoprotein ALT831_02187 PF00701 Dihydrodipicolinate synthetase family ALT831_02189 PF00578 AhpC/TSA family ALT831_02190 PF02899 Phage integrase, N-terminal SAM-like domain ALT831_02190 PF00589 Phage integrase family ALT831_02194 PF00578 AhpC/TSA family ALT831_02204 PF01594 AI-2E family transporter ALT831_02205 PF01435 Peptidase family M48 ALT831_02206 PF00578 AhpC/TSA family ALT831_02207 PF03960 ArsC family ALT831_02208 PF03358 NADPH-dependent FMN reductase ALT831_02211 PF00308 Bacterial dnaA protein ALT831_02213 PF00586 AIR synthase related protein, N-terminal domain ALT831_02213 PF02769 AIR synthase related protein, C-terminal domain ALT831_02214 PF00551 Formyl transferase ALT831_02216 PF09317 Domain of unknown function (DUF1974) ALT831_02216 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALT831_02216 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALT831_02216 PF02770 Acyl-CoA dehydrogenase, middle domain ALT831_02218 PF00196 Bacterial regulatory proteins, luxR family ALT831_02218 PF00072 Response regulator receiver domain ALT831_02219 PF13649 Methyltransferase domain ALT831_02220 PF08003 Protein of unknown function (DUF1698) ALT831_02221 PF00485 Phosphoribulokinase / Uridine kinase family ALT831_02224 PF00128 Alpha amylase, catalytic domain ALT831_02225 PF13419 Haloacid dehalogenase-like hydrolase ALT831_02226 PF00994 Probable molybdopterin binding domain ALT831_02226 PF03454 MoeA C-terminal region (domain IV) ALT831_02226 PF03453 MoeA N-terminal region (domain I and II) ALT831_02227 PF01554 MatE ALT831_02231 PF00291 Pyridoxal-phosphate dependent enzyme ALT831_02244 PF04134 Protein of unknown function, DUF393 ALT831_02252 PF02567 Phenazine biosynthesis-like protein ALT831_02254 PF00378 Enoyl-CoA hydratase/isomerase ALT831_02257 PF00255 Glutathione peroxidase ALT831_02258 PF02525 Flavodoxin-like fold ALT831_02260 PF01053 Cys/Met metabolism PLP-dependent enzyme ALT831_02263 PF00155 Aminotransferase class I and II ALT831_02264 PF10459 Peptidase S46 ALT831_02266 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ALT831_02269 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALT831_02269 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALT831_02269 PF02770 Acyl-CoA dehydrogenase, middle domain ALT831_02269 PF12806 Acetyl-CoA dehydrogenase C-terminal like ALT831_02270 PF12833 Helix-turn-helix domain ALT831_02270 PF07883 Cupin domain ALT831_02271 PF07715 TonB-dependent Receptor Plug Domain ALT831_02271 PF00593 TonB dependent receptor ALT831_02273 PF00326 Prolyl oligopeptidase family ALT831_02273 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ALT831_02274 PF00873 AcrB/AcrD/AcrF family ALT831_02275 PF13533 Biotin-lipoyl like ALT831_02277 PF00766 Electron transfer flavoprotein FAD-binding domain ALT831_02277 PF01012 Electron transfer flavoprotein domain ALT831_02278 PF01012 Electron transfer flavoprotein domain ALT831_02280 PF00816 H-NS histone family ALT831_02281 PF00561 alpha/beta hydrolase fold ALT831_02283 PF00258 Flavodoxin ALT831_02284 PF00672 HAMP domain ALT831_02284 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_02285 PF01475 Ferric uptake regulator family ALT831_02286 PF01063 Amino-transferase class IV ALT831_02287 PF02626 Carboxyltransferase domain, subdomain A and B ALT831_02288 PF02682 Carboxyltransferase domain, subdomain C and D ALT831_02289 PF03746 LamB/YcsF family ALT831_02290 PF13509 S1 domain ALT831_02290 PF17783 CvfB-like winged helix domain ALT831_02291 PF02566 OsmC-like protein ALT831_02292 PF13533 Biotin-lipoyl like ALT831_02293 PF00873 AcrB/AcrD/AcrF family ALT831_02294 PF00873 AcrB/AcrD/AcrF family ALT831_02297 PF00155 Aminotransferase class I and II ALT831_02299 PF01966 HD domain ALT831_02299 PF13286 Phosphohydrolase-associated domain ALT831_02301 PF00174 Oxidoreductase molybdopterin binding domain ALT831_02302 PF01794 Ferric reductase like transmembrane component ALT831_02305 PF02810 SEC-C motif ALT831_02306 PF00128 Alpha amylase, catalytic domain ALT831_02307 PF00107 Zinc-binding dehydrogenase ALT831_02307 PF08240 Alcohol dehydrogenase GroES-like domain ALT831_02309 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALT831_02309 PF02770 Acyl-CoA dehydrogenase, middle domain ALT831_02309 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALT831_02311 PF00593 TonB dependent receptor ALT831_02311 PF07715 TonB-dependent Receptor Plug Domain ALT831_02315 PF06969 HemN C-terminal domain ALT831_02315 PF04055 Radical SAM superfamily ALT831_02316 PF00005 ABC transporter ALT831_02316 PF03459 TOBE domain ALT831_02317 PF00528 Binding-protein-dependent transport system inner membrane component ALT831_02319 PF02391 MoaE protein ALT831_02320 PF02597 ThiS family ALT831_02321 PF01967 MoaC family ALT831_02322 PF00994 Probable molybdopterin binding domain ALT831_02323 PF00899 ThiF family ALT831_02325 PF02423 Ornithine cyclodeaminase/mu-crystallin family ALT831_02326 PF00155 Aminotransferase class I and II ALT831_02327 PF01037 Lrp/AsnC ligand binding domain ALT831_02330 PF01136 Peptidase family U32 ALT831_02330 PF16325 Peptidase family U32 C-terminal domain ALT831_02331 PF00037 4Fe-4S binding domain ALT831_02332 PF00155 Aminotransferase class I and II ALT831_02333 PF03435 Saccharopine dehydrogenase NADP binding domain ALT831_02334 PF00155 Aminotransferase class I and II ALT831_02337 PF01717 Cobalamin-independent synthase, Catalytic domain ALT831_02337 PF08267 Cobalamin-independent synthase, N-terminal domain ALT831_02338 PF00593 TonB dependent receptor ALT831_02338 PF07715 TonB-dependent Receptor Plug Domain ALT831_02340 PF00892 EamA-like transporter family ALT831_02342 PF02245 Methylpurine-DNA glycosylase (MPG) ALT831_02346 PF01810 LysE type translocator ALT831_02347 PF00155 Aminotransferase class I and II ALT831_02347 PF00392 Bacterial regulatory proteins, gntR family ALT831_02349 PF13538 UvrD-like helicase C-terminal domain ALT831_02350 PF12705 PD-(D/E)XK nuclease superfamily ALT831_02350 PF13361 UvrD-like helicase C-terminal domain ALT831_02350 PF00580 UvrD/REP helicase N-terminal domain ALT831_02351 PF17946 RecC C-terminal domain ALT831_02354 PF00501 AMP-binding enzyme ALT831_02355 PF00990 Diguanylate cyclase, GGDEF domain ALT831_02355 PF00563 EAL domain ALT831_02355 PF03707 Bacterial signalling protein N terminal repeat ALT831_02356 PF12706 Beta-lactamase superfamily domain ALT831_02356 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ALT831_02356 PF17770 Ribonuclease J C-terminal domain ALT831_02359 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_02359 PF03466 LysR substrate binding domain ALT831_02363 PF01022 Bacterial regulatory protein, arsR family ALT831_02365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_02365 PF03466 LysR substrate binding domain ALT831_02367 PF00158 Sigma-54 interaction domain ALT831_02367 PF02954 Bacterial regulatory protein, Fis family ALT831_02367 PF00072 Response regulator receiver domain ALT831_02369 PF01590 GAF domain ALT831_02369 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_02369 PF00512 His Kinase A (phospho-acceptor) domain ALT831_02369 PF08446 PAS fold ALT831_02369 PF00360 Phytochrome region ALT831_02370 PF00072 Response regulator receiver domain ALT831_02371 PF00072 Response regulator receiver domain ALT831_02371 PF09308 LuxQ, periplasmic ALT831_02371 PF00512 His Kinase A (phospho-acceptor) domain ALT831_02371 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_02377 PF10677 Protein of unknown function (DUF2490) ALT831_02378 PF07043 Protein of unknown function (DUF1328) ALT831_02382 PF07023 Protein of unknown function (DUF1315) ALT831_02384 PF01235 Sodium:alanine symporter family ALT831_02385 PF18027 Cytosolic carboxypeptidase N-terminal domain ALT831_02385 PF00246 Zinc carboxypeptidase ALT831_02386 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALT831_02386 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALT831_02388 PF01641 SelR domain ALT831_02389 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ALT831_02389 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALT831_02390 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ALT831_02390 PF00128 Alpha amylase, catalytic domain ALT831_02391 PF02806 Alpha amylase, C-terminal all-beta domain ALT831_02391 PF00128 Alpha amylase, catalytic domain ALT831_02391 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ALT831_02392 PF02446 4-alpha-glucanotransferase ALT831_02393 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALT831_02393 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALT831_02394 PF01263 Aldose 1-epimerase ALT831_02395 PF01081 KDPG and KHG aldolase ALT831_02396 PF02685 Glucokinase ALT831_02397 PF00920 Dehydratase family ALT831_02398 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ALT831_02399 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ALT831_02399 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ALT831_02400 PF01380 SIS domain ALT831_02400 PF01418 Helix-turn-helix domain, rpiR family ALT831_02401 PF02887 Pyruvate kinase, alpha/beta domain ALT831_02401 PF00224 Pyruvate kinase, barrel domain ALT831_02402 PF01048 Phosphorylase superfamily ALT831_02406 PF04972 BON domain ALT831_02412 PF09347 Domain of unknown function (DUF1989) ALT831_02417 PF04962 KduI/IolB family ALT831_02418 PF03480 Bacterial extracellular solute-binding protein, family 7 ALT831_02419 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ALT831_02420 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALT831_02421 PF00356 Bacterial regulatory proteins, lacI family ALT831_02422 PF08666 SAF domain ALT831_02422 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ALT831_02423 PF02614 Glucuronate isomerase ALT831_02424 PF08125 Mannitol dehydrogenase C-terminal domain ALT831_02424 PF01232 Mannitol dehydrogenase Rossmann domain ALT831_02425 PF01081 KDPG and KHG aldolase ALT831_02426 PF00294 pfkB family carbohydrate kinase ALT831_02427 PF13472 GDSL-like Lipase/Acylhydrolase family ALT831_02430 PF07470 Glycosyl Hydrolase Family 88 ALT831_02431 PF00295 Glycosyl hydrolases family 28 ALT831_02432 PF01095 Pectinesterase ALT831_02433 PF00072 Response regulator receiver domain ALT831_02433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_02433 PF00672 HAMP domain ALT831_02433 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALT831_02433 PF00512 His Kinase A (phospho-acceptor) domain ALT831_02433 PF01627 Hpt domain ALT831_02436 PF04231 Endonuclease I ALT831_02437 PF11838 ERAP1-like C-terminal domain ALT831_02437 PF01433 Peptidase family M1 domain ALT831_02438 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_02438 PF00672 HAMP domain ALT831_02438 PF02743 Cache domain ALT831_02441 PF03466 LysR substrate binding domain ALT831_02441 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_02442 PF01965 DJ-1/PfpI family ALT831_02443 PF00465 Iron-containing alcohol dehydrogenase ALT831_02444 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALT831_02445 PF00360 Phytochrome region ALT831_02445 PF00563 EAL domain ALT831_02445 PF01590 GAF domain ALT831_02445 PF00990 Diguanylate cyclase, GGDEF domain ALT831_02447 PF00199 Catalase ALT831_02447 PF06628 Catalase-related immune-responsive ALT831_02448 PF11849 Domain of unknown function (DUF3369) ALT831_02449 PF00512 His Kinase A (phospho-acceptor) domain ALT831_02449 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_02449 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALT831_02450 PF12697 Alpha/beta hydrolase family ALT831_02454 PF00589 Phage integrase family ALT831_02460 PF02796 Helix-turn-helix domain of resolvase ALT831_02460 PF00239 Resolvase, N terminal domain ALT831_02465 PF12833 Helix-turn-helix domain ALT831_02466 PF00939 Sodium:sulfate symporter transmembrane region ALT831_02467 PF00692 dUTPase ALT831_02468 PF10609 NUBPL iron-transfer P-loop NTPase ALT831_02469 PF08264 Anticodon-binding domain of tRNA ALT831_02469 PF09334 tRNA synthetases class I (M) ALT831_02469 PF01588 Putative tRNA binding domain ALT831_02470 PF00924 Mechanosensitive ion channel ALT831_02470 PF05552 Conserved TM helix ALT831_02472 PF08241 Methyltransferase domain ALT831_02473 PF16123 Hydroxyacylglutathione hydrolase C-terminus ALT831_02473 PF00753 Metallo-beta-lactamase superfamily ALT831_02474 PF01464 Transglycosylase SLT domain ALT831_02474 PF01476 LysM domain ALT831_02478 PF04958 Arginine N-succinyltransferase beta subunit ALT831_02479 PF01406 tRNA synthetases class I (C) catalytic domain ALT831_02479 PF09190 DALR domain ALT831_02480 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALT831_02481 PF00149 Calcineurin-like phosphoesterase ALT831_02483 PF15975 Flotillin ALT831_02483 PF01145 SPFH domain / Band 7 family ALT831_02484 PF03466 LysR substrate binding domain ALT831_02484 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_02487 PF00128 Alpha amylase, catalytic domain ALT831_02488 PF01638 HxlR-like helix-turn-helix ALT831_02489 PF08240 Alcohol dehydrogenase GroES-like domain ALT831_02489 PF00107 Zinc-binding dehydrogenase ALT831_02490 PF03741 Integral membrane protein TerC family ALT831_02491 PF08240 Alcohol dehydrogenase GroES-like domain ALT831_02491 PF00107 Zinc-binding dehydrogenase ALT831_02492 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_02492 PF03466 LysR substrate binding domain ALT831_02497 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) ALT831_02499 PF00156 Phosphoribosyl transferase domain ALT831_02500 PF02674 Colicin V production protein ALT831_02501 PF05036 Sporulation related domain ALT831_02502 PF02875 Mur ligase family, glutamate ligase domain ALT831_02502 PF08245 Mur ligase middle domain ALT831_02503 PF17848 Acetyl-coA carboxylase zinc finger domain ALT831_02503 PF01039 Carboxyl transferase domain ALT831_02504 PF01416 tRNA pseudouridine synthase ALT831_02506 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALT831_02506 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALT831_02507 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALT831_02507 PF11890 Domain of unknown function (DUF3410) ALT831_02507 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALT831_02508 PF00596 Class II Aldolase and Adducin N-terminal domain ALT831_02510 PF12697 Alpha/beta hydrolase family ALT831_02512 PF00109 Beta-ketoacyl synthase, N-terminal domain ALT831_02512 PF02801 Beta-ketoacyl synthase, C-terminal domain ALT831_02513 PF00501 AMP-binding enzyme ALT831_02513 PF13193 AMP-binding enzyme C-terminal domain ALT831_02515 PF01266 FAD dependent oxidoreductase ALT831_02515 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ALT831_02523 PF13411 MerR HTH family regulatory protein ALT831_02526 PF00005 ABC transporter ALT831_02528 PF07683 Cobalamin synthesis protein cobW C-terminal domain ALT831_02528 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALT831_02529 PF02311 AraC-like ligand binding domain ALT831_02529 PF12833 Helix-turn-helix domain ALT831_02530 PF00857 Isochorismatase family ALT831_02532 PF02667 Short chain fatty acid transporter ALT831_02533 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALT831_02533 PF00672 HAMP domain ALT831_02533 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_02533 PF00512 His Kinase A (phospho-acceptor) domain ALT831_02533 PF00072 Response regulator receiver domain ALT831_02533 PF01627 Hpt domain ALT831_02534 PF05193 Peptidase M16 inactive domain ALT831_02534 PF00675 Insulinase (Peptidase family M16) ALT831_02537 PF04315 Elongation factor P hydroxylase ALT831_02542 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALT831_02542 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALT831_02543 PF00378 Enoyl-CoA hydratase/isomerase ALT831_02544 PF00440 Bacterial regulatory proteins, tetR family ALT831_02544 PF02909 Tetracyclin repressor-like, C-terminal domain ALT831_02545 PF05199 GMC oxidoreductase ALT831_02545 PF00732 GMC oxidoreductase ALT831_02547 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain ALT831_02547 PF06974 Protein of unknown function (DUF1298) ALT831_02548 PF00440 Bacterial regulatory proteins, tetR family ALT831_02548 PF08361 MAATS-type transcriptional repressor, C-terminal region ALT831_02549 PF04286 Protein of unknown function (DUF445) ALT831_02555 PF00326 Prolyl oligopeptidase family ALT831_02555 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ALT831_02556 PF00392 Bacterial regulatory proteins, gntR family ALT831_02556 PF07840 FadR C-terminal domain ALT831_02557 PF06450 Bacterial Na+/H+ antiporter B (NhaB) ALT831_02558 PF02600 Disulfide bond formation protein DsbB ALT831_02559 PF13302 Acetyltransferase (GNAT) domain ALT831_02560 PF03692 Putative zinc- or iron-chelating domain ALT831_02561 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALT831_02563 PF05166 YcgL domain ALT831_02564 PF01612 3'-5' exonuclease ALT831_02564 PF00570 HRDC domain ALT831_02565 PF00501 AMP-binding enzyme ALT831_02565 PF13193 AMP-binding enzyme C-terminal domain ALT831_02566 PF12697 Alpha/beta hydrolase family ALT831_02569 PF00814 Glycoprotease family ALT831_02570 PF06733 DEAD_2 ALT831_02570 PF13307 Helicase C-terminal domain ALT831_02578 PF16657 Maltogenic Amylase, C-terminal domain ALT831_02578 PF02903 Alpha amylase, N-terminal ig-like domain ALT831_02578 PF00128 Alpha amylase, catalytic domain ALT831_02585 PF13614 AAA domain ALT831_02588 PF08029 HisG, C-terminal domain ALT831_02588 PF01634 ATP phosphoribosyltransferase ALT831_02589 PF00815 Histidinol dehydrogenase ALT831_02590 PF00155 Aminotransferase class I and II ALT831_02591 PF00475 Imidazoleglycerol-phosphate dehydratase ALT831_02592 PF00117 Glutamine amidotransferase class-I ALT831_02593 PF00977 Histidine biosynthesis protein ALT831_02594 PF00977 Histidine biosynthesis protein ALT831_02595 PF01502 Phosphoribosyl-AMP cyclohydrolase ALT831_02595 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ALT831_02598 PF01226 Formate/nitrite transporter ALT831_02599 PF00675 Insulinase (Peptidase family M16) ALT831_02599 PF05193 Peptidase M16 inactive domain ALT831_02600 PF10502 Signal peptidase, peptidase S26 ALT831_02601 PF07715 TonB-dependent Receptor Plug Domain ALT831_02601 PF00593 TonB dependent receptor ALT831_02604 PF05191 Adenylate kinase, active site lid ALT831_02605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_02605 PF00183 Hsp90 protein ALT831_02606 PF02132 RecR protein ALT831_02606 PF13662 Toprim domain ALT831_02609 PF00970 Oxidoreductase FAD-binding domain ALT831_02609 PF00175 Oxidoreductase NAD-binding domain ALT831_02621 PF00589 Phage integrase family ALT831_02621 PF12167 Arm DNA-binding domain ALT831_02623 PF02575 YbaB/EbfC DNA-binding family ALT831_02624 PF12169 DNA polymerase III subunits gamma and tau domain III ALT831_02624 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ALT831_02624 PF12170 DNA polymerase III tau subunit V interacting with alpha ALT831_02625 PF00156 Phosphoribosyl transferase domain ALT831_02628 PF05114 Protein of unknown function (DUF692) ALT831_02636 PF01066 CDP-alcohol phosphatidyltransferase ALT831_02640 PF01565 FAD binding domain ALT831_02640 PF09330 D-lactate dehydrogenase, membrane binding ALT831_02641 PF02652 L-lactate permease ALT831_02642 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_02642 PF03466 LysR substrate binding domain ALT831_02645 PF10431 C-terminal, D2-small domain, of ClpB protein ALT831_02645 PF00004 ATPase family associated with various cellular activities (AAA) ALT831_02645 PF07724 AAA domain (Cdc48 subfamily) ALT831_02645 PF17871 AAA lid domain ALT831_02645 PF02861 Clp amino terminal domain, pathogenicity island component ALT831_02646 PF02578 Multi-copper polyphenol oxidoreductase laccase ALT831_02647 PF01479 S4 domain ALT831_02647 PF00849 RNA pseudouridylate synthase ALT831_02648 PF13525 Outer membrane lipoprotein ALT831_02650 PF04542 Sigma-70 region 2 ALT831_02650 PF04545 Sigma-70, region 4 ALT831_02653 PF00106 short chain dehydrogenase ALT831_02657 PF13677 Membrane MotB of proton-channel complex MotA/MotB ALT831_02657 PF00691 OmpA family ALT831_02658 PF01618 MotA/TolQ/ExbB proton channel family ALT831_02659 PF02609 Exonuclease VII small subunit ALT831_02660 PF00348 Polyprenyl synthetase ALT831_02661 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ALT831_02661 PF02779 Transketolase, pyrimidine binding domain ALT831_02661 PF02780 Transketolase, C-terminal domain ALT831_02664 PF04608 Phosphatidylglycerophosphatase A ALT831_02665 PF00586 AIR synthase related protein, N-terminal domain ALT831_02665 PF02769 AIR synthase related protein, C-terminal domain ALT831_02666 PF01029 NusB family ALT831_02667 PF00885 6,7-dimethyl-8-ribityllumazine synthase ALT831_02668 PF00925 GTP cyclohydrolase II ALT831_02668 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ALT831_02669 PF00677 Lumazine binding domain ALT831_02670 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALT831_02670 PF01872 RibD C-terminal domain ALT831_02671 PF03477 ATP cone domain ALT831_02672 PF00464 Serine hydroxymethyltransferase ALT831_02673 PF00132 Bacterial transferase hexapeptide (six repeats) ALT831_02673 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ALT831_02674 PF12848 ABC transporter ALT831_02674 PF00005 ABC transporter ALT831_02676 PF18073 Rubredoxin metal binding domain ALT831_02678 PF18429 Domain of unknown function (DUF5609) ALT831_02680 PF01026 TatD related DNase ALT831_02681 PF01243 Pyridoxamine 5'-phosphate oxidase ALT831_02681 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ALT831_02682 PF07650 KH domain ALT831_02682 PF01926 50S ribosome-binding GTPase ALT831_02683 PF14622 Ribonuclease-III-like ALT831_02683 PF00035 Double-stranded RNA binding motif ALT831_02684 PF10502 Signal peptidase, peptidase S26 ALT831_02685 PF00679 Elongation factor G C-terminus ALT831_02685 PF03144 Elongation factor Tu domain 2 ALT831_02685 PF00009 Elongation factor Tu GTP binding domain ALT831_02685 PF06421 GTP-binding protein LepA C-terminus ALT831_02687 PF17188 MucB/RseB C-terminal domain ALT831_02687 PF03888 MucB/RseB N-terminal domain ALT831_02689 PF08281 Sigma-70, region 4 ALT831_02689 PF04542 Sigma-70 region 2 ALT831_02690 PF00890 FAD binding domain ALT831_02690 PF02910 Fumarate reductase flavoprotein C-term ALT831_02693 PF03937 Flavinator of succinate dehydrogenase ALT831_02695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALT831_02696 PF00543 Nitrogen regulatory protein P-II ALT831_02697 PF02540 NAD synthase ALT831_02704 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor ALT831_02704 PF07963 Prokaryotic N-terminal methylation motif ALT831_02709 PF02401 LytB protein ALT831_02710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALT831_02711 PF01252 Signal peptidase (SPase) II ALT831_02712 PF08264 Anticodon-binding domain of tRNA ALT831_02712 PF00133 tRNA synthetases class I (I, L, M and V) ALT831_02712 PF06827 Zinc finger found in FPG and IleRS ALT831_02713 PF01687 Riboflavin kinase ALT831_02713 PF06574 FAD synthetase ALT831_02714 PF03023 Lipid II flippase MurJ ALT831_02715 PF01649 Ribosomal protein S20 ALT831_02716 PF00106 short chain dehydrogenase ALT831_02718 PF00106 short chain dehydrogenase ALT831_02719 PF01758 Sodium Bile acid symporter family ALT831_02720 PF03466 LysR substrate binding domain ALT831_02720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_02723 PF01546 Peptidase family M20/M25/M40 ALT831_02723 PF07687 Peptidase dimerisation domain ALT831_02725 PF13145 PPIC-type PPIASE domain ALT831_02726 PF00216 Bacterial DNA-binding protein ALT831_02727 PF02190 ATP-dependent protease La (LON) substrate-binding domain ALT831_02727 PF00004 ATPase family associated with various cellular activities (AAA) ALT831_02727 PF05362 Lon protease (S16) C-terminal proteolytic domain ALT831_02728 PF07724 AAA domain (Cdc48 subfamily) ALT831_02728 PF10431 C-terminal, D2-small domain, of ClpB protein ALT831_02728 PF06689 ClpX C4-type zinc finger ALT831_02729 PF00574 Clp protease ALT831_02730 PF05697 Bacterial trigger factor protein (TF) ALT831_02730 PF05698 Bacterial trigger factor protein (TF) C-terminus ALT831_02730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALT831_02739 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ALT831_02739 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ALT831_02741 PF01980 tRNA-methyltransferase O ALT831_02741 PF18389 TrmO C-terminal domain ALT831_02742 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALT831_02742 PF03129 Anticodon binding domain ALT831_02743 PF00753 Metallo-beta-lactamase superfamily ALT831_02743 PF12706 Beta-lactamase superfamily domain ALT831_02744 PF02253 Phospholipase A1 ALT831_02745 PF00850 Histone deacetylase domain ALT831_02746 PF00672 HAMP domain ALT831_02746 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_02746 PF02743 Cache domain ALT831_02747 PF02540 NAD synthase ALT831_02747 PF00958 GMP synthase C terminal domain ALT831_02747 PF00117 Glutamine amidotransferase class-I ALT831_02748 PF00571 CBS domain ALT831_02748 PF00478 IMP dehydrogenase / GMP reductase domain ALT831_02749 PF02601 Exonuclease VII, large subunit ALT831_02749 PF13742 OB-fold nucleic acid binding domain ALT831_02753 PF01926 50S ribosome-binding GTPase ALT831_02753 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ALT831_02754 PF13360 PQQ-like domain ALT831_02755 PF09976 Tetratricopeptide repeat-like domain ALT831_02756 PF13393 Histidyl-tRNA synthetase ALT831_02756 PF03129 Anticodon binding domain ALT831_02757 PF04551 GcpE protein ALT831_02758 PF13464 Domain of unknown function (DUF4115) ALT831_02760 PF04055 Radical SAM superfamily ALT831_02761 PF00334 Nucleoside diphosphate kinase ALT831_02762 PF02657 Fe-S metabolism associated domain ALT831_02763 PF01883 Iron-sulfur cluster assembly protein ALT831_02764 PF01521 Iron-sulphur cluster biosynthesis ALT831_02765 PF00266 Aminotransferase class-V ALT831_02766 PF01458 Uncharacterized protein family (UPF0051) ALT831_02767 PF00005 ABC transporter ALT831_02768 PF01458 Uncharacterized protein family (UPF0051) ALT831_02769 PF00266 Aminotransferase class-V ALT831_02770 PF02082 Transcriptional regulator ALT831_02772 PF00743 Flavin-binding monooxygenase-like ALT831_02773 PF00132 Bacterial transferase hexapeptide (six repeats) ALT831_02773 PF06426 Serine acetyltransferase, N-terminal ALT831_02774 PF00588 SpoU rRNA Methylase family ALT831_02775 PF00459 Inositol monophosphatase family ALT831_02777 PF04397 LytTr DNA-binding domain ALT831_02777 PF00072 Response regulator receiver domain ALT831_02778 PF07549 SecD/SecF GG Motif ALT831_02778 PF02355 Protein export membrane protein ALT831_02779 PF07549 SecD/SecF GG Motif ALT831_02779 PF02355 Protein export membrane protein ALT831_02779 PF13721 SecD export protein N-terminal TM region ALT831_02780 PF02699 Preprotein translocase subunit ALT831_02781 PF01702 Queuine tRNA-ribosyltransferase ALT831_02782 PF02547 Queuosine biosynthesis protein ALT831_02785 PF04012 PspA/IM30 family ALT831_02786 PF07885 Ion channel ALT831_02789 PF06693 Protein of unknown function (DUF1190) ALT831_02790 PF03738 Glutathionylspermidine synthase preATP-grasp ALT831_02793 PF00005 ABC transporter ALT831_02796 PF04960 Glutaminase ALT831_02797 PF00245 Alkaline phosphatase ALT831_02798 PF00072 Response regulator receiver domain ALT831_02799 PF00463 Isocitrate lyase family ALT831_02800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_02800 PF03466 LysR substrate binding domain ALT831_02801 PF01274 Malate synthase ALT831_02803 PF01370 NAD dependent epimerase/dehydratase family ALT831_02804 PF13180 PDZ domain ALT831_02813 PF14602 Hexapeptide repeat of succinyl-transferase ALT831_02813 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal ALT831_02813 PF00132 Bacterial transferase hexapeptide (six repeats) ALT831_02817 PF13439 Glycosyltransferase Family 4 ALT831_02817 PF00534 Glycosyl transferases group 1 ALT831_02820 PF00733 Asparagine synthase ALT831_02820 PF13537 Glutamine amidotransferase domain ALT831_02821 PF13439 Glycosyltransferase Family 4 ALT831_02821 PF00534 Glycosyl transferases group 1 ALT831_02823 PF00535 Glycosyl transferase family 2 ALT831_02827 PF01527 Transposase ALT831_02828 PF01757 Acyltransferase family ALT831_02829 PF01943 Polysaccharide biosynthesis protein ALT831_02835 PF01522 Polysaccharide deacetylase ALT831_02836 PF02397 Bacterial sugar transferase ALT831_02839 PF13614 AAA domain ALT831_02841 PF01471 Putative peptidoglycan binding domain ALT831_02841 PF13401 AAA domain ALT831_02842 PF01541 GIY-YIG catalytic domain ALT831_02844 PF08335 GlnD PII-uridylyltransferase ALT831_02844 PF03710 Glutamate-ammonia ligase adenylyltransferase ALT831_02846 PF03279 Bacterial lipid A biosynthesis acyltransferase ALT831_02850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALT831_02850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALT831_02850 PF02770 Acyl-CoA dehydrogenase, middle domain ALT831_02850 PF09317 Domain of unknown function (DUF1974) ALT831_02853 PF00563 EAL domain ALT831_02853 PF00990 Diguanylate cyclase, GGDEF domain ALT831_02853 PF03707 Bacterial signalling protein N terminal repeat ALT831_02854 PF00265 Thymidine kinase ALT831_02856 PF04820 Tryptophan halogenase ALT831_02857 PF00356 Bacterial regulatory proteins, lacI family ALT831_02862 PF14508 Glycosyl-hydrolase 97 N-terminal ALT831_02862 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation ALT831_02862 PF10566 Glycoside hydrolase 97 ALT831_02863 PF01926 50S ribosome-binding GTPase ALT831_02864 PF00588 SpoU rRNA Methylase family ALT831_02864 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALT831_02867 PF01276 Orn/Lys/Arg decarboxylase, major domain ALT831_02867 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ALT831_02867 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ALT831_02873 PF00171 Aldehyde dehydrogenase family ALT831_02874 PF05199 GMC oxidoreductase ALT831_02874 PF00732 GMC oxidoreductase ALT831_02877 PF05971 RNA methyltransferase ALT831_02878 PF00376 MerR family regulatory protein ALT831_02878 PF09278 MerR, DNA binding ALT831_02884 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALT831_02884 PF02770 Acyl-CoA dehydrogenase, middle domain ALT831_02884 PF18158 Adaptive response protein AidB N-terminal domain ALT831_02890 PF03965 Penicillinase repressor ALT831_02894 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALT831_02896 PF00111 2Fe-2S iron-sulfur cluster binding domain ALT831_02896 PF01799 [2Fe-2S] binding domain ALT831_02897 PF03450 CO dehydrogenase flavoprotein C-terminal domain ALT831_02897 PF00941 FAD binding domain in molybdopterin dehydrogenase ALT831_02898 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALT831_02898 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALT831_02899 PF01738 Dienelactone hydrolase family ALT831_02906 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALT831_02907 PF00528 Binding-protein-dependent transport system inner membrane component ALT831_02908 PF00528 Binding-protein-dependent transport system inner membrane component ALT831_02908 PF12911 N-terminal TM domain of oligopeptide transport permease C ALT831_02909 PF00005 ABC transporter ALT831_02909 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALT831_02911 PF00561 alpha/beta hydrolase fold ALT831_02911 PF00106 short chain dehydrogenase ALT831_02912 PF01965 DJ-1/PfpI family ALT831_02913 PF03631 Virulence factor BrkB ALT831_02914 PF07690 Major Facilitator Superfamily ALT831_02915 PF00144 Beta-lactamase ALT831_02917 PF04397 LytTr DNA-binding domain ALT831_02917 PF00072 Response regulator receiver domain ALT831_02920 PF00873 AcrB/AcrD/AcrF family ALT831_02925 PF00962 Adenosine/AMP deaminase ALT831_02928 PF07152 YaeQ protein ALT831_02934 PF07690 Major Facilitator Superfamily ALT831_02935 PF01432 Peptidase family M3 ALT831_02937 PF01258 Prokaryotic dksA/traR C4-type zinc finger ALT831_02938 PF00583 Acetyltransferase (GNAT) family ALT831_02938 PF00696 Amino acid kinase family ALT831_02939 PF06827 Zinc finger found in FPG and IleRS ALT831_02939 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ALT831_02939 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ALT831_02943 PF09382 RQC domain ALT831_02943 PF00270 DEAD/DEAH box helicase ALT831_02943 PF00271 Helicase conserved C-terminal domain ALT831_02943 PF00570 HRDC domain ALT831_02943 PF16124 RecQ zinc-binding ALT831_02946 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_02946 PF00512 His Kinase A (phospho-acceptor) domain ALT831_02946 PF01627 Hpt domain ALT831_02946 PF00072 Response regulator receiver domain ALT831_02946 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALT831_02946 PF00672 HAMP domain ALT831_02948 PF00360 Phytochrome region ALT831_02948 PF08446 PAS fold ALT831_02948 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_02948 PF00512 His Kinase A (phospho-acceptor) domain ALT831_02948 PF01590 GAF domain ALT831_02949 PF07995 Glucose / Sorbosone dehydrogenase ALT831_02957 PF02347 Glycine cleavage system P-protein ALT831_02958 PF01597 Glycine cleavage H-protein ALT831_02959 PF08669 Glycine cleavage T-protein C-terminal barrel domain ALT831_02959 PF01571 Aminomethyltransferase folate-binding domain ALT831_02960 PF07690 Major Facilitator Superfamily ALT831_02961 PF01979 Amidohydrolase family ALT831_02962 PF01380 SIS domain ALT831_02963 PF01869 BadF/BadG/BcrA/BcrD ATPase family ALT831_02964 PF02838 Glycosyl hydrolase family 20, domain 2 ALT831_02964 PF00728 Glycosyl hydrolase family 20, catalytic domain ALT831_02964 PF03173 Putative carbohydrate binding domain ALT831_02966 PF00356 Bacterial regulatory proteins, lacI family ALT831_02967 PF04820 Tryptophan halogenase ALT831_02968 PF03466 LysR substrate binding domain ALT831_02968 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_02970 PF00557 Metallopeptidase family M24 ALT831_02970 PF01321 Creatinase/Prolidase N-terminal domain ALT831_02973 PF01494 FAD binding domain ALT831_02974 PF01494 FAD binding domain ALT831_02975 PF05195 Aminopeptidase P, N-terminal domain ALT831_02975 PF00557 Metallopeptidase family M24 ALT831_02976 PF03695 Uncharacterised protein family (UPF0149) ALT831_02978 PF00294 pfkB family carbohydrate kinase ALT831_02979 PF01156 Inosine-uridine preferring nucleoside hydrolase ALT831_02980 PF00512 His Kinase A (phospho-acceptor) domain ALT831_02980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_02981 PF01812 5-formyltetrahydrofolate cyclo-ligase family ALT831_02982 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ALT831_02983 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALT831_02983 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALT831_02983 PF01842 ACT domain ALT831_02988 PF00873 AcrB/AcrD/AcrF family ALT831_02989 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALT831_02990 PF03466 LysR substrate binding domain ALT831_02990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_02991 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALT831_02991 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALT831_02992 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALT831_02992 PF02817 e3 binding domain ALT831_02992 PF00364 Biotin-requiring enzyme ALT831_02993 PF00456 Transketolase, thiamine diphosphate binding domain ALT831_02993 PF17831 Pyruvate dehydrogenase E1 component middle domain ALT831_02994 PF07729 FCD domain ALT831_02994 PF00392 Bacterial regulatory proteins, gntR family ALT831_02996 PF01510 N-acetylmuramoyl-L-alanine amidase ALT831_02998 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ALT831_02998 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ALT831_02999 PF07963 Prokaryotic N-terminal methylation motif ALT831_03000 PF00482 Type II secretion system (T2SS), protein F ALT831_03001 PF06750 Bacterial Peptidase A24 N-terminal domain ALT831_03001 PF01478 Type IV leader peptidase family ALT831_03002 PF01121 Dephospho-CoA kinase ALT831_03003 PF07072 Cell division protein ALT831_03004 PF03884 DNA gyrase inhibitor YacG ALT831_03005 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ALT831_03006 PF00672 HAMP domain ALT831_03006 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_03006 PF02743 Cache domain ALT831_03007 PF00072 Response regulator receiver domain ALT831_03007 PF00196 Bacterial regulatory proteins, luxR family ALT831_03008 PF13614 AAA domain ALT831_03010 PF02895 Signal transducing histidine kinase, homodimeric domain ALT831_03010 PF01584 CheW-like domain ALT831_03010 PF01627 Hpt domain ALT831_03010 PF07194 P2 response regulator binding domain ALT831_03010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03011 PF00072 Response regulator receiver domain ALT831_03012 PF01739 CheR methyltransferase, SAM binding domain ALT831_03012 PF03705 CheR methyltransferase, all-alpha domain ALT831_03014 PF01339 CheB methylesterase ALT831_03014 PF00072 Response regulator receiver domain ALT831_03015 PF01584 CheW-like domain ALT831_03016 PF00672 HAMP domain ALT831_03016 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_03016 PF02743 Cache domain ALT831_03017 PF00293 NUDIX domain ALT831_03018 PF07516 SecA Wing and Scaffold domain ALT831_03018 PF01043 SecA preprotein cross-linking domain ALT831_03018 PF07517 SecA DEAD-like domain ALT831_03018 PF02810 SEC-C motif ALT831_03019 PF01551 Peptidase family M23 ALT831_03019 PF01476 LysM domain ALT831_03019 PF08525 Opacity-associated protein A N-terminal motif ALT831_03020 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ALT831_03021 PF12327 FtsZ family, C-terminal domain ALT831_03021 PF00091 Tubulin/FtsZ family, GTPase domain ALT831_03022 PF02491 SHS2 domain inserted in FTSA ALT831_03023 PF08478 POTRA domain, FtsQ-type ALT831_03023 PF03799 Cell division protein FtsQ ALT831_03024 PF01820 D-ala D-ala ligase N-terminus ALT831_03024 PF07478 D-ala D-ala ligase C-terminus ALT831_03025 PF08245 Mur ligase middle domain ALT831_03025 PF01225 Mur ligase family, catalytic domain ALT831_03025 PF02875 Mur ligase family, glutamate ligase domain ALT831_03026 PF03033 Glycosyltransferase family 28 N-terminal domain ALT831_03026 PF04101 Glycosyltransferase family 28 C-terminal domain ALT831_03027 PF01098 Cell cycle protein ALT831_03028 PF02875 Mur ligase family, glutamate ligase domain ALT831_03028 PF08245 Mur ligase middle domain ALT831_03029 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ALT831_03029 PF00953 Glycosyl transferase family 4 ALT831_03030 PF01225 Mur ligase family, catalytic domain ALT831_03030 PF08245 Mur ligase middle domain ALT831_03030 PF02875 Mur ligase family, glutamate ligase domain ALT831_03031 PF02875 Mur ligase family, glutamate ligase domain ALT831_03031 PF08245 Mur ligase middle domain ALT831_03031 PF01225 Mur ligase family, catalytic domain ALT831_03032 PF00905 Penicillin binding protein transpeptidase domain ALT831_03032 PF03717 Penicillin-binding Protein dimerisation domain ALT831_03033 PF04999 Cell division protein FtsL ALT831_03034 PF01795 MraW methylase family ALT831_03035 PF02381 MraZ protein, putative antitoxin-like ALT831_03039 PF00873 AcrB/AcrD/AcrF family ALT831_03040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALT831_03040 PF00529 HlyD membrane-fusion protein of T1SS ALT831_03044 PF08534 Redoxin ALT831_03044 PF00462 Glutaredoxin ALT831_03045 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ALT831_03047 PF00990 Diguanylate cyclase, GGDEF domain ALT831_03049 PF00158 Sigma-54 interaction domain ALT831_03049 PF02954 Bacterial regulatory protein, Fis family ALT831_03049 PF00072 Response regulator receiver domain ALT831_03050 PF00072 Response regulator receiver domain ALT831_03050 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03050 PF09456 RcsC Alpha-Beta-Loop (ABL) ALT831_03050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03051 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALT831_03051 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALT831_03054 PF05552 Conserved TM helix ALT831_03054 PF00924 Mechanosensitive ion channel ALT831_03055 PF04452 RNA methyltransferase ALT831_03056 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ALT831_03056 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ALT831_03057 PF02622 Uncharacterized ACR, COG1678 ALT831_03058 PF03652 Holliday junction resolvase ALT831_03060 PF00437 Type II/IV secretion system protein ALT831_03061 PF00437 Type II/IV secretion system protein ALT831_03062 PF01168 Alanine racemase, N-terminal domain ALT831_03063 PF03807 NADP oxidoreductase coenzyme F420-dependent ALT831_03063 PF14748 Pyrroline-5-carboxylate reductase dimerisation ALT831_03064 PF02325 YGGT family ALT831_03066 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALT831_03066 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALT831_03070 PF00080 Copper/zinc superoxide dismutase (SODC) ALT831_03073 PF02566 OsmC-like protein ALT831_03074 PF01625 Peptide methionine sulfoxide reductase ALT831_03076 PF03591 AzlC protein ALT831_03078 PF07690 Major Facilitator Superfamily ALT831_03079 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ALT831_03080 PF03883 Peroxide stress protein YaaA ALT831_03081 PF00923 Transaldolase/Fructose-6-phosphate aldolase ALT831_03082 PF00342 Phosphoglucose isomerase ALT831_03084 PF03167 Uracil DNA glycosylase superfamily ALT831_03085 PF00291 Pyridoxal-phosphate dependent enzyme ALT831_03085 PF14821 Threonine synthase N terminus ALT831_03086 PF08544 GHMP kinases C terminal ALT831_03086 PF00288 GHMP kinases N terminal domain ALT831_03087 PF00742 Homoserine dehydrogenase ALT831_03087 PF13840 ACT domain ALT831_03087 PF01842 ACT domain ALT831_03087 PF03447 Homoserine dehydrogenase, NAD binding domain ALT831_03087 PF00696 Amino acid kinase family ALT831_03088 PF17755 UvrA DNA-binding domain ALT831_03089 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_03089 PF03466 LysR substrate binding domain ALT831_03090 PF08240 Alcohol dehydrogenase GroES-like domain ALT831_03090 PF00107 Zinc-binding dehydrogenase ALT831_03092 PF00196 Bacterial regulatory proteins, luxR family ALT831_03092 PF00072 Response regulator receiver domain ALT831_03093 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03093 PF07730 Histidine kinase ALT831_03096 PF01022 Bacterial regulatory protein, arsR family ALT831_03098 PF03358 NADPH-dependent FMN reductase ALT831_03099 PF01758 Sodium Bile acid symporter family ALT831_03100 PF01339 CheB methylesterase ALT831_03100 PF00072 Response regulator receiver domain ALT831_03101 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ALT831_03102 PF00072 Response regulator receiver domain ALT831_03102 PF00486 Transcriptional regulatory protein, C terminal ALT831_03103 PF08521 Two-component sensor kinase N-terminal ALT831_03103 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03103 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03107 PF00291 Pyridoxal-phosphate dependent enzyme ALT831_03109 PF00962 Adenosine/AMP deaminase ALT831_03110 PF04116 Fatty acid hydroxylase superfamily ALT831_03114 PF16653 Saccharopine dehydrogenase C-terminal domain ALT831_03114 PF03435 Saccharopine dehydrogenase NADP binding domain ALT831_03115 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ALT831_03118 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALT831_03119 PF04348 LppC putative lipoprotein ALT831_03120 PF02021 Uncharacterised protein family UPF0102 ALT831_03121 PF00534 Glycosyl transferases group 1 ALT831_03122 PF13580 SIS domain ALT831_03123 PF04972 BON domain ALT831_03124 PF07690 Major Facilitator Superfamily ALT831_03126 PF00893 Small Multidrug Resistance protein ALT831_03127 PF07730 Histidine kinase ALT831_03128 PF00072 Response regulator receiver domain ALT831_03128 PF00196 Bacterial regulatory proteins, luxR family ALT831_03131 PF00593 TonB dependent receptor ALT831_03131 PF07715 TonB-dependent Receptor Plug Domain ALT831_03135 PF00285 Citrate synthase, C-terminal domain ALT831_03136 PF00694 Aconitase C-terminal domain ALT831_03136 PF00330 Aconitase family (aconitate hydratase) ALT831_03137 PF04303 PrpF protein ALT831_03138 PF00990 Diguanylate cyclase, GGDEF domain ALT831_03139 PF00474 Sodium:solute symporter family ALT831_03142 PF00989 PAS fold ALT831_03142 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03142 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03142 PF18415 Histidine kinase receptor ArcB trans-membrane domain ALT831_03142 PF01627 Hpt domain ALT831_03142 PF00072 Response regulator receiver domain ALT831_03143 PF01510 N-acetylmuramoyl-L-alanine amidase ALT831_03144 PF01493 GXGXG motif ALT831_03144 PF04898 Glutamate synthase central domain ALT831_03144 PF01645 Conserved region in glutamate synthase ALT831_03144 PF00310 Glutamine amidotransferases class-II ALT831_03145 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ALT831_03145 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALT831_03149 PF01048 Phosphorylase superfamily ALT831_03150 PF03186 CobD/Cbib protein ALT831_03151 PF01497 Periplasmic binding protein ALT831_03152 PF00581 Rhodanese-like domain ALT831_03155 PF01266 FAD dependent oxidoreductase ALT831_03156 PF07237 Protein of unknown function (DUF1428) ALT831_03160 PF00579 tRNA synthetases class I (W and Y) ALT831_03161 PF01464 Transglycosylase SLT domain ALT831_03161 PF10145 Phage-related minor tail protein ALT831_03161 PF01551 Peptidase family M23 ALT831_03162 PF03702 Anhydro-N-acetylmuramic acid kinase ALT831_03163 PF03600 Citrate transporter ALT831_03164 PF07690 Major Facilitator Superfamily ALT831_03166 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALT831_03168 PF01053 Cys/Met metabolism PLP-dependent enzyme ALT831_03169 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALT831_03170 PF13417 Glutathione S-transferase, N-terminal domain ALT831_03170 PF00043 Glutathione S-transferase, C-terminal domain ALT831_03171 PF01521 Iron-sulphur cluster biosynthesis ALT831_03172 PF03976 Polyphosphate kinase 2 (PPK2) ALT831_03173 PF03776 Septum formation topological specificity factor MinE ALT831_03174 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ALT831_03175 PF05209 Septum formation inhibitor MinC, N-terminal domain ALT831_03175 PF03775 Septum formation inhibitor MinC, C-terminal domain ALT831_03176 PF10415 Fumarase C C-terminus ALT831_03176 PF00206 Lyase ALT831_03178 PF00127 Copper binding proteins, plastocyanin/azurin family ALT831_03182 PF03653 Uncharacterised protein family (UPF0093) ALT831_03185 PF01566 Natural resistance-associated macrophage protein ALT831_03186 PF00155 Aminotransferase class I and II ALT831_03187 PF00072 Response regulator receiver domain ALT831_03187 PF00486 Transcriptional regulatory protein, C terminal ALT831_03188 PF03144 Elongation factor Tu domain 2 ALT831_03188 PF00679 Elongation factor G C-terminus ALT831_03188 PF00009 Elongation factor Tu GTP binding domain ALT831_03190 PF00120 Glutamine synthetase, catalytic domain ALT831_03190 PF03951 Glutamine synthetase, beta-Grasp domain ALT831_03192 PF00989 PAS fold ALT831_03192 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03193 PF00072 Response regulator receiver domain ALT831_03193 PF02954 Bacterial regulatory protein, Fis family ALT831_03193 PF00158 Sigma-54 interaction domain ALT831_03194 PF00072 Response regulator receiver domain ALT831_03195 PF01553 Acyltransferase ALT831_03196 PF06877 Regulator of ribonuclease activity B ALT831_03198 PF00990 Diguanylate cyclase, GGDEF domain ALT831_03202 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03202 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03202 PF00072 Response regulator receiver domain ALT831_03202 PF01627 Hpt domain ALT831_03202 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALT831_03202 PF00672 HAMP domain ALT831_03203 PF08264 Anticodon-binding domain of tRNA ALT831_03203 PF00133 tRNA synthetases class I (I, L, M and V) ALT831_03203 PF10458 Valyl tRNA synthetase tRNA binding arm ALT831_03204 PF04364 DNA polymerase III chi subunit, HolC ALT831_03205 PF00883 Cytosol aminopeptidase family, catalytic domain ALT831_03205 PF02789 Cytosol aminopeptidase family, N-terminal domain ALT831_03206 PF03739 Lipopolysaccharide export system permease LptF/LptG ALT831_03207 PF03739 Lipopolysaccharide export system permease LptF/LptG ALT831_03210 PF04545 Sigma-70, region 4 ALT831_03210 PF04542 Sigma-70 region 2 ALT831_03223 PF01638 HxlR-like helix-turn-helix ALT831_03226 PF00043 Glutathione S-transferase, C-terminal domain ALT831_03226 PF02798 Glutathione S-transferase, N-terminal domain ALT831_03228 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALT831_03228 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALT831_03229 PF14760 Rnk N-terminus ALT831_03229 PF01272 Transcription elongation factor, GreA/GreB, C-term ALT831_03230 PF00175 Oxidoreductase NAD-binding domain ALT831_03230 PF00042 Globin ALT831_03230 PF00970 Oxidoreductase FAD-binding domain ALT831_03231 PF00158 Sigma-54 interaction domain ALT831_03231 PF01590 GAF domain ALT831_03235 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ALT831_03235 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ALT831_03236 PF00072 Response regulator receiver domain ALT831_03236 PF00486 Transcriptional regulatory protein, C terminal ALT831_03237 PF01594 AI-2E family transporter ALT831_03238 PF07715 TonB-dependent Receptor Plug Domain ALT831_03238 PF00593 TonB dependent receptor ALT831_03241 PF08240 Alcohol dehydrogenase GroES-like domain ALT831_03241 PF00107 Zinc-binding dehydrogenase ALT831_03242 PF13098 Thioredoxin-like domain ALT831_03243 PF00578 AhpC/TSA family ALT831_03244 PF00072 Response regulator receiver domain ALT831_03244 PF00486 Transcriptional regulatory protein, C terminal ALT831_03245 PF08521 Two-component sensor kinase N-terminal ALT831_03245 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03250 PF00230 Major intrinsic protein ALT831_03251 PF00892 EamA-like transporter family ALT831_03254 PF02659 Putative manganese efflux pump ALT831_03256 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ALT831_03258 PF00557 Metallopeptidase family M24 ALT831_03258 PF01321 Creatinase/Prolidase N-terminal domain ALT831_03259 PF05221 S-adenosyl-L-homocysteine hydrolase ALT831_03259 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ALT831_03260 PF08448 PAS fold ALT831_03260 PF00990 Diguanylate cyclase, GGDEF domain ALT831_03261 PF03547 Membrane transport protein ALT831_03262 PF12697 Alpha/beta hydrolase family ALT831_03263 PF13360 PQQ-like domain ALT831_03263 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALT831_03264 PF01011 PQQ enzyme repeat ALT831_03264 PF13360 PQQ-like domain ALT831_03268 PF00005 ABC transporter ALT831_03270 PF00883 Cytosol aminopeptidase family, catalytic domain ALT831_03270 PF02789 Cytosol aminopeptidase family, N-terminal domain ALT831_03271 PF12706 Beta-lactamase superfamily domain ALT831_03272 PF03070 TENA/THI-4/PQQC family ALT831_03273 PF05402 Coenzyme PQQ synthesis protein D (PqqD) ALT831_03274 PF13186 Iron-sulfur cluster-binding domain ALT831_03274 PF04055 Radical SAM superfamily ALT831_03279 PF00072 Response regulator receiver domain ALT831_03279 PF00196 Bacterial regulatory proteins, luxR family ALT831_03280 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03282 PF04205 FMN-binding domain ALT831_03282 PF12801 4Fe-4S binding domain ALT831_03283 PF00171 Aldehyde dehydrogenase family ALT831_03284 PF00196 Bacterial regulatory proteins, luxR family ALT831_03284 PF00072 Response regulator receiver domain ALT831_03285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03285 PF07730 Histidine kinase ALT831_03285 PF05231 MASE1 ALT831_03286 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_03286 PF08447 PAS fold ALT831_03286 PF13426 PAS domain ALT831_03288 PF00171 Aldehyde dehydrogenase family ALT831_03289 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALT831_03289 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALT831_03292 PF02028 BCCT, betaine/carnitine/choline family transporter ALT831_03293 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_03293 PF03466 LysR substrate binding domain ALT831_03294 PF01070 FMN-dependent dehydrogenase ALT831_03295 PF01565 FAD binding domain ALT831_03295 PF09330 D-lactate dehydrogenase, membrane binding ALT831_03296 PF00196 Bacterial regulatory proteins, luxR family ALT831_03297 PF03783 Curli production assembly/transport component CsgG ALT831_03302 PF00082 Subtilase family ALT831_03303 PF00072 Response regulator receiver domain ALT831_03303 PF00196 Bacterial regulatory proteins, luxR family ALT831_03304 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03304 PF07730 Histidine kinase ALT831_03306 PF00270 DEAD/DEAH box helicase ALT831_03306 PF00271 Helicase conserved C-terminal domain ALT831_03307 PF00924 Mechanosensitive ion channel ALT831_03307 PF12795 Mechanosensitive ion channel porin domain ALT831_03307 PF12794 Mechanosensitive ion channel inner membrane domain 1 ALT831_03309 PF00141 Peroxidase ALT831_03311 PF00563 EAL domain ALT831_03311 PF00990 Diguanylate cyclase, GGDEF domain ALT831_03311 PF13426 PAS domain ALT831_03314 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_03314 PF03466 LysR substrate binding domain ALT831_03316 PF01925 Sulfite exporter TauE/SafE ALT831_03317 PF00155 Aminotransferase class I and II ALT831_03318 PF00072 Response regulator receiver domain ALT831_03318 PF08769 Sporulation initiation factor Spo0A C terminal ALT831_03320 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03322 PF00136 DNA polymerase family B ALT831_03322 PF03104 DNA polymerase family B, exonuclease domain ALT831_03324 PF13193 AMP-binding enzyme C-terminal domain ALT831_03324 PF00501 AMP-binding enzyme ALT831_03332 PF05958 tRNA (Uracil-5-)-methyltransferase ALT831_03333 PF00440 Bacterial regulatory proteins, tetR family ALT831_03335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALT831_03335 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALT831_03337 PF03167 Uracil DNA glycosylase superfamily ALT831_03338 PF00990 Diguanylate cyclase, GGDEF domain ALT831_03338 PF03707 Bacterial signalling protein N terminal repeat ALT831_03338 PF00563 EAL domain ALT831_03340 PF01507 Phosphoadenosine phosphosulfate reductase family ALT831_03341 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ALT831_03341 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ALT831_03342 PF00175 Oxidoreductase NAD-binding domain ALT831_03342 PF00667 FAD binding domain ALT831_03342 PF00258 Flavodoxin ALT831_03346 PF04024 PspC domain ALT831_03347 PF04012 PspA/IM30 family ALT831_03349 PF01207 Dihydrouridine synthase (Dus) ALT831_03351 PF00691 OmpA family ALT831_03351 PF01389 OmpA-like transmembrane domain ALT831_03352 PF00004 ATPase family associated with various cellular activities (AAA) ALT831_03352 PF05362 Lon protease (S16) C-terminal proteolytic domain ALT831_03352 PF02190 ATP-dependent protease La (LON) substrate-binding domain ALT831_03353 PF00563 EAL domain ALT831_03353 PF00990 Diguanylate cyclase, GGDEF domain ALT831_03353 PF03707 Bacterial signalling protein N terminal repeat ALT831_03354 PF00756 Putative esterase ALT831_03355 PF01553 Acyltransferase ALT831_03356 PF01553 Acyltransferase ALT831_03357 PF00924 Mechanosensitive ion channel ALT831_03360 PF01370 NAD dependent epimerase/dehydratase family ALT831_03361 PF00209 Sodium:neurotransmitter symporter family ALT831_03364 PF01625 Peptide methionine sulfoxide reductase ALT831_03367 PF00258 Flavodoxin ALT831_03369 PF02472 Biopolymer transport protein ExbD/TolR ALT831_03371 PF13181 Tetratricopeptide repeat ALT831_03371 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) ALT831_03372 PF01270 Glycosyl hydrolases family 8 ALT831_03374 PF07238 PilZ domain ALT831_03374 PF03170 Bacterial cellulose synthase subunit ALT831_03374 PF03552 Cellulose synthase ALT831_03374 PF00535 Glycosyl transferase family 2 ALT831_03377 PF05175 Methyltransferase small domain ALT831_03378 PF13460 NAD(P)H-binding ALT831_03379 PF00326 Prolyl oligopeptidase family ALT831_03379 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ALT831_03380 PF08000 Bacterial PH domain ALT831_03381 PF08448 PAS fold ALT831_03381 PF00563 EAL domain ALT831_03381 PF00990 Diguanylate cyclase, GGDEF domain ALT831_03382 PF00291 Pyridoxal-phosphate dependent enzyme ALT831_03383 PF07969 Amidohydrolase family ALT831_03385 PF00753 Metallo-beta-lactamase superfamily ALT831_03387 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_03387 PF03466 LysR substrate binding domain ALT831_03388 PF13230 Glutamine amidotransferases class-II ALT831_03391 PF05360 yiaA/B two helix domain ALT831_03395 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ALT831_03396 PF07715 TonB-dependent Receptor Plug Domain ALT831_03396 PF00593 TonB dependent receptor ALT831_03397 PF00171 Aldehyde dehydrogenase family ALT831_03398 PF01613 Flavin reductase like domain ALT831_03399 PF00881 Nitroreductase family ALT831_03400 PF00561 alpha/beta hydrolase fold ALT831_03401 PF01042 Endoribonuclease L-PSP ALT831_03402 PF00857 Isochorismatase family ALT831_03403 PF00296 Luciferase-like monooxygenase ALT831_03404 PF08362 YcdC-like protein, C-terminal region ALT831_03404 PF00440 Bacterial regulatory proteins, tetR family ALT831_03407 PF09905 DNA-binding protein VF530 ALT831_03408 PF02447 GntP family permease ALT831_03410 PF00356 Bacterial regulatory proteins, lacI family ALT831_03411 PF16123 Hydroxyacylglutathione hydrolase C-terminus ALT831_03411 PF00753 Metallo-beta-lactamase superfamily ALT831_03413 PF11799 impB/mucB/samB family C-terminal domain ALT831_03413 PF00817 impB/mucB/samB family ALT831_03413 PF11798 IMS family HHH motif ALT831_03414 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH ALT831_03417 PF02424 ApbE family ALT831_03418 PF00970 Oxidoreductase FAD-binding domain ALT831_03418 PF00175 Oxidoreductase NAD-binding domain ALT831_03418 PF00111 2Fe-2S iron-sulfur cluster binding domain ALT831_03419 PF02508 Rnf-Nqr subunit, membrane protein ALT831_03420 PF02508 Rnf-Nqr subunit, membrane protein ALT831_03421 PF04205 FMN-binding domain ALT831_03422 PF03116 NQR2, RnfD, RnfE family ALT831_03423 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ALT831_03423 PF11973 NQRA C-terminal domain ALT831_03424 PF12241 Trans-2-enoyl-CoA reductase catalytic region ALT831_03424 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ALT831_03424 PF07055 Enoyl reductase FAD binding domain ALT831_03425 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ALT831_03425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALT831_03426 PF00311 Phosphoenolpyruvate carboxylase ALT831_03427 PF00056 lactate/malate dehydrogenase, NAD binding domain ALT831_03427 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ALT831_03428 PF02863 Arginine repressor, C-terminal domain ALT831_03428 PF01316 Arginine repressor, DNA binding domain ALT831_03430 PF00593 TonB dependent receptor ALT831_03433 PF00485 Phosphoribulokinase / Uridine kinase family ALT831_03434 PF01773 Na+ dependent nucleoside transporter N-terminus ALT831_03434 PF07662 Na+ dependent nucleoside transporter C-terminus ALT831_03434 PF07670 Nucleoside recognition ALT831_03437 PF02469 Fasciclin domain ALT831_03439 PF00072 Response regulator receiver domain ALT831_03439 PF00990 Diguanylate cyclase, GGDEF domain ALT831_03441 PF00571 CBS domain ALT831_03442 PF00474 Sodium:solute symporter family ALT831_03444 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03444 PF18415 Histidine kinase receptor ArcB trans-membrane domain ALT831_03444 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03446 PF08443 RimK-like ATP-grasp domain ALT831_03446 PF18030 RimK PreATP-grasp domain ALT831_03448 PF08443 RimK-like ATP-grasp domain ALT831_03448 PF18030 RimK PreATP-grasp domain ALT831_03450 PF00196 Bacterial regulatory proteins, luxR family ALT831_03450 PF00072 Response regulator receiver domain ALT831_03451 PF16177 Acetyl-coenzyme A synthetase N-terminus ALT831_03451 PF00501 AMP-binding enzyme ALT831_03451 PF13193 AMP-binding enzyme C-terminal domain ALT831_03453 PF02690 Na+/Pi-cotransporter ALT831_03454 PF00248 Aldo/keto reductase family ALT831_03456 PF00082 Subtilase family ALT831_03459 PF00069 Protein kinase domain ALT831_03460 PF07730 Histidine kinase ALT831_03460 PF17200 Single Cache domain 2 ALT831_03461 PF00196 Bacterial regulatory proteins, luxR family ALT831_03461 PF00072 Response regulator receiver domain ALT831_03462 PF00082 Subtilase family ALT831_03465 PF00199 Catalase ALT831_03465 PF06628 Catalase-related immune-responsive ALT831_03468 PF00009 Elongation factor Tu GTP binding domain ALT831_03468 PF03144 Elongation factor Tu domain 2 ALT831_03468 PF03143 Elongation factor Tu C-terminal domain ALT831_03473 PF03309 Type III pantothenate kinase ALT831_03474 PF02237 Biotin protein ligase C terminal domain ALT831_03474 PF08279 HTH domain ALT831_03474 PF03099 Biotin/lipoate A/B protein ligase family ALT831_03475 PF01565 FAD binding domain ALT831_03475 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ALT831_03476 PF12729 Four helix bundle sensory module for signal transduction ALT831_03476 PF00672 HAMP domain ALT831_03476 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_03484 PF00664 ABC transporter transmembrane region ALT831_03484 PF03412 Peptidase C39 family ALT831_03484 PF00005 ABC transporter ALT831_03485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_03485 PF03466 LysR substrate binding domain ALT831_03490 PF01050 Mannose-6-phosphate isomerase ALT831_03490 PF00483 Nucleotidyl transferase ALT831_03491 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALT831_03491 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALT831_03491 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALT831_03492 PF00535 Glycosyl transferase family 2 ALT831_03493 PF16363 GDP-mannose 4,6 dehydratase ALT831_03494 PF04321 RmlD substrate binding domain ALT831_03495 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ALT831_03496 PF00483 Nucleotidyl transferase ALT831_03506 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALT831_03506 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALT831_03507 PF02348 Cytidylyltransferase ALT831_03508 PF00535 Glycosyl transferase family 2 ALT831_03508 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 ALT831_03515 PF13439 Glycosyltransferase Family 4 ALT831_03515 PF00534 Glycosyl transferases group 1 ALT831_03517 PF01467 Cytidylyltransferase-like ALT831_03518 PF00700 Bacterial flagellin C-terminal helical region ALT831_03518 PF07196 Flagellin hook IN motif ALT831_03518 PF00669 Bacterial flagellin N-terminal helical region ALT831_03522 PF01196 Ribosomal protein L17 ALT831_03523 PF01000 RNA polymerase Rpb3/RpoA insert domain ALT831_03523 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ALT831_03523 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ALT831_03524 PF00163 Ribosomal protein S4/S9 N-terminal domain ALT831_03524 PF01479 S4 domain ALT831_03525 PF00411 Ribosomal protein S11 ALT831_03526 PF00416 Ribosomal protein S13/S18 ALT831_03528 PF00444 Ribosomal protein L36 ALT831_03529 PF00344 SecY translocase ALT831_03530 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ALT831_03531 PF00327 Ribosomal protein L30p/L7e ALT831_03532 PF00333 Ribosomal protein S5, N-terminal domain ALT831_03532 PF03719 Ribosomal protein S5, C-terminal domain ALT831_03533 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ALT831_03534 PF00347 Ribosomal protein L6 ALT831_03535 PF00410 Ribosomal protein S8 ALT831_03536 PF00253 Ribosomal protein S14p/S29e ALT831_03537 PF00673 ribosomal L5P family C-terminus ALT831_03537 PF00281 Ribosomal protein L5 ALT831_03538 PF00467 KOW motif ALT831_03538 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ALT831_03539 PF00238 Ribosomal protein L14p/L23e ALT831_03540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03540 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03540 PF09308 LuxQ, periplasmic ALT831_03540 PF00072 Response regulator receiver domain ALT831_03542 PF05922 Peptidase inhibitor I9 ALT831_03542 PF00082 Subtilase family ALT831_03543 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALT831_03543 PF00588 SpoU rRNA Methylase family ALT831_03544 PF08461 Ribonuclease R winged-helix domain ALT831_03544 PF17876 Cold shock domain ALT831_03544 PF00773 RNB domain ALT831_03544 PF08206 Ribonuclease B OB domain ALT831_03544 PF00575 S1 RNA binding domain ALT831_03545 PF09423 PhoD-like phosphatase ALT831_03545 PF16655 PhoD-like phosphatase, N-terminal domain ALT831_03548 PF07715 TonB-dependent Receptor Plug Domain ALT831_03548 PF00593 TonB dependent receptor ALT831_03551 PF08238 Sel1 repeat ALT831_03553 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ALT831_03554 PF00175 Oxidoreductase NAD-binding domain ALT831_03555 PF04389 Peptidase family M28 ALT831_03557 PF00360 Phytochrome region ALT831_03557 PF08446 PAS fold ALT831_03557 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03557 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03557 PF01590 GAF domain ALT831_03559 PF01654 Cytochrome bd terminal oxidase subunit I ALT831_03560 PF02322 Cytochrome bd terminal oxidase subunit II ALT831_03562 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_03562 PF00672 HAMP domain ALT831_03563 PF01037 Lrp/AsnC ligand binding domain ALT831_03563 PF13404 AsnC-type helix-turn-helix domain ALT831_03566 PF00313 'Cold-shock' DNA-binding domain ALT831_03567 PF03109 ABC1 family ALT831_03569 PF01209 ubiE/COQ5 methyltransferase family ALT831_03571 PF01432 Peptidase family M3 ALT831_03572 PF00072 Response regulator receiver domain ALT831_03574 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03574 PF08448 PAS fold ALT831_03574 PF13188 PAS domain ALT831_03574 PF00072 Response regulator receiver domain ALT831_03574 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03575 PF00158 Sigma-54 interaction domain ALT831_03575 PF00072 Response regulator receiver domain ALT831_03575 PF02954 Bacterial regulatory protein, Fis family ALT831_03576 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALT831_03576 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALT831_03577 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALT831_03577 PF00384 Molybdopterin oxidoreductase ALT831_03577 PF01568 Molydopterin dinucleotide binding domain ALT831_03578 PF00593 TonB dependent receptor ALT831_03578 PF07715 TonB-dependent Receptor Plug Domain ALT831_03580 PF07676 WD40-like Beta Propeller Repeat ALT831_03580 PF00326 Prolyl oligopeptidase family ALT831_03591 PF03412 Peptidase C39 family ALT831_03591 PF00664 ABC transporter transmembrane region ALT831_03591 PF00005 ABC transporter ALT831_03592 PF00196 Bacterial regulatory proteins, luxR family ALT831_03592 PF00072 Response regulator receiver domain ALT831_03597 PF00004 ATPase family associated with various cellular activities (AAA) ALT831_03597 PF07724 AAA domain (Cdc48 subfamily) ALT831_03598 PF00227 Proteasome subunit ALT831_03599 PF00313 'Cold-shock' DNA-binding domain ALT831_03601 PF05036 Sporulation related domain ALT831_03602 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ALT831_03602 PF18074 Primosomal protein N C-terminal domain ALT831_03602 PF00271 Helicase conserved C-terminal domain ALT831_03602 PF00270 DEAD/DEAH box helicase ALT831_03602 PF17764 3′ DNA-binding domain (3′BD) ALT831_03603 PF01197 Ribosomal protein L31 ALT831_03605 PF00390 Malic enzyme, N-terminal domain ALT831_03605 PF03949 Malic enzyme, NAD binding domain ALT831_03606 PF01340 Met Apo-repressor, MetJ ALT831_03607 PF02219 Methylenetetrahydrofolate reductase ALT831_03608 PF03631 Virulence factor BrkB ALT831_03611 PF00561 alpha/beta hydrolase fold ALT831_03612 PF02580 D-Tyr-tRNA(Tyr) deacylase ALT831_03613 PF00583 Acetyltransferase (GNAT) family ALT831_03613 PF09500 Putative thioesterase (yiiD_Cterm) ALT831_03614 PF00140 Sigma-70 factor, region 1.2 ALT831_03614 PF04542 Sigma-70 region 2 ALT831_03614 PF04545 Sigma-70, region 4 ALT831_03615 PF08668 HDOD domain ALT831_03615 PF00563 EAL domain ALT831_03616 PF08668 HDOD domain ALT831_03616 PF00563 EAL domain ALT831_03617 PF18075 FtsX extracellular domain ALT831_03618 PF00005 ABC transporter ALT831_03619 PF00448 SRP54-type protein, GTPase domain ALT831_03619 PF02881 SRP54-type protein, helical bundle domain ALT831_03622 PF01914 MarC family integral membrane protein ALT831_03624 PF00883 Cytosol aminopeptidase family, catalytic domain ALT831_03624 PF12404 Peptidase ALT831_03625 PF03749 Sugar fermentation stimulation protein RE domain ALT831_03625 PF17746 SfsA N-terminal OB domain ALT831_03626 PF01258 Prokaryotic dksA/traR C4-type zinc finger ALT831_03627 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALT831_03628 PF12627 Probable RNA and SrmB- binding site of polymerase A ALT831_03628 PF12626 Polymerase A arginine-rich C-terminus ALT831_03628 PF01743 Poly A polymerase head domain ALT831_03629 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ALT831_03630 PF02548 Ketopantoate hydroxymethyltransferase ALT831_03631 PF02569 Pantoate-beta-alanine ligase ALT831_03632 PF00282 Pyridoxal-dependent decarboxylase conserved domain ALT831_03635 PF01061 ABC-2 type transporter ALT831_03636 PF00005 ABC transporter ALT831_03637 PF00486 Transcriptional regulatory protein, C terminal ALT831_03637 PF00072 Response regulator receiver domain ALT831_03638 PF00672 HAMP domain ALT831_03638 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03638 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03642 PF00571 CBS domain ALT831_03642 PF01595 Cyclin M transmembrane N-terminal domain ALT831_03643 PF03773 Predicted permease ALT831_03644 PF13722 5TM C-terminal transporter carbon starvation CstA ALT831_03644 PF02554 Carbon starvation protein CstA ALT831_03645 PF00258 Flavodoxin ALT831_03645 PF00175 Oxidoreductase NAD-binding domain ALT831_03645 PF00667 FAD binding domain ALT831_03654 PF02472 Biopolymer transport protein ExbD/TolR ALT831_03656 PF01618 MotA/TolQ/ExbB proton channel family ALT831_03658 PF07715 TonB-dependent Receptor Plug Domain ALT831_03658 PF00593 TonB dependent receptor ALT831_03659 PF01070 FMN-dependent dehydrogenase ALT831_03660 PF13640 2OG-Fe(II) oxygenase superfamily ALT831_03660 PF18331 PKHD-type hydroxylase C-terminal domain ALT831_03661 PF07715 TonB-dependent Receptor Plug Domain ALT831_03661 PF00593 TonB dependent receptor ALT831_03664 PF03144 Elongation factor Tu domain 2 ALT831_03664 PF03143 Elongation factor Tu C-terminal domain ALT831_03664 PF00009 Elongation factor Tu GTP binding domain ALT831_03665 PF03144 Elongation factor Tu domain 2 ALT831_03665 PF00679 Elongation factor G C-terminus ALT831_03665 PF03764 Elongation factor G, domain IV ALT831_03665 PF00009 Elongation factor Tu GTP binding domain ALT831_03665 PF14492 Elongation Factor G, domain II ALT831_03666 PF00177 Ribosomal protein S7p/S5e ALT831_03667 PF00164 Ribosomal protein S12/S23 ALT831_03668 PF04997 RNA polymerase Rpb1, domain 1 ALT831_03668 PF00623 RNA polymerase Rpb1, domain 2 ALT831_03668 PF04983 RNA polymerase Rpb1, domain 3 ALT831_03668 PF05000 RNA polymerase Rpb1, domain 4 ALT831_03668 PF04998 RNA polymerase Rpb1, domain 5 ALT831_03669 PF10385 RNA polymerase beta subunit external 1 domain ALT831_03669 PF04563 RNA polymerase beta subunit ALT831_03669 PF04561 RNA polymerase Rpb2, domain 2 ALT831_03669 PF04565 RNA polymerase Rpb2, domain 3 ALT831_03669 PF04560 RNA polymerase Rpb2, domain 7 ALT831_03669 PF00562 RNA polymerase Rpb2, domain 6 ALT831_03670 PF16320 Ribosomal protein L7/L12 dimerisation domain ALT831_03670 PF00542 Ribosomal protein L7/L12 C-terminal domain ALT831_03671 PF00466 Ribosomal protein L10 ALT831_03672 PF00687 Ribosomal protein L1p/L10e family ALT831_03673 PF03946 Ribosomal protein L11, N-terminal domain ALT831_03673 PF00298 Ribosomal protein L11, RNA binding domain ALT831_03676 PF00467 KOW motif ALT831_03676 PF02357 Transcription termination factor nusG ALT831_03677 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ALT831_03679 PF00664 ABC transporter transmembrane region ALT831_03679 PF00005 ABC transporter ALT831_03680 PF03737 Aldolase/RraA ALT831_03681 PF01431 Peptidase family M13 ALT831_03681 PF05649 Peptidase family M13 ALT831_03684 PF00270 DEAD/DEAH box helicase ALT831_03684 PF00271 Helicase conserved C-terminal domain ALT831_03684 PF03880 DbpA RNA binding domain ALT831_03686 PF01979 Amidohydrolase family ALT831_03687 PF08212 Lipocalin-like domain ALT831_03688 PF00248 Aldo/keto reductase family ALT831_03689 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALT831_03690 PF00924 Mechanosensitive ion channel ALT831_03690 PF05552 Conserved TM helix ALT831_03691 PF07690 Major Facilitator Superfamily ALT831_03692 PF00128 Alpha amylase, catalytic domain ALT831_03694 PF01227 GTP cyclohydrolase I ALT831_03696 PF04371 Porphyromonas-type peptidyl-arginine deiminase ALT831_03697 PF00795 Carbon-nitrogen hydrolase ALT831_03699 PF00270 DEAD/DEAH box helicase ALT831_03699 PF08494 DEAD/H associated ALT831_03699 PF00271 Helicase conserved C-terminal domain ALT831_03700 PF04235 Protein of unknown function (DUF418) ALT831_03703 PF04679 ATP dependent DNA ligase C terminal region ALT831_03703 PF01068 ATP dependent DNA ligase domain ALT831_03703 PF04675 DNA ligase N terminus ALT831_03704 PF08207 Elongation factor P (EF-P) KOW-like domain ALT831_03704 PF09285 Elongation factor P, C-terminal ALT831_03704 PF01132 Elongation factor P (EF-P) OB domain ALT831_03705 PF00294 pfkB family carbohydrate kinase ALT831_03709 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_03710 PF02798 Glutathione S-transferase, N-terminal domain ALT831_03710 PF00043 Glutathione S-transferase, C-terminal domain ALT831_03711 PF02798 Glutathione S-transferase, N-terminal domain ALT831_03713 PF00561 alpha/beta hydrolase fold ALT831_03716 PF00171 Aldehyde dehydrogenase family ALT831_03717 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALT831_03717 PF00205 Thiamine pyrophosphate enzyme, central domain ALT831_03717 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALT831_03719 PF00762 Ferrochelatase ALT831_03720 PF03806 AbgT putative transporter family ALT831_03721 PF01145 SPFH domain / Band 7 family ALT831_03722 PF01145 SPFH domain / Band 7 family ALT831_03722 PF12221 Bacterial membrane protein N terminal ALT831_03723 PF16360 GTP-binding GTPase Middle Region ALT831_03723 PF13167 GTP-binding GTPase N-terminal ALT831_03723 PF01926 50S ribosome-binding GTPase ALT831_03724 PF17209 Hfq protein ALT831_03726 PF08676 MutL C terminal dimerisation domain ALT831_03726 PF01119 DNA mismatch repair protein, C-terminal domain ALT831_03727 PF01520 N-acetylmuramoyl-L-alanine amidase ALT831_03728 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ALT831_03729 PF01256 Carbohydrate kinase ALT831_03729 PF03853 YjeF-related protein N-terminus ALT831_03730 PF08331 Domain of unknown function (DUF1730) ALT831_03732 PF01208 Uroporphyrinogen decarboxylase (URO-D) ALT831_03733 PF00293 NUDIX domain ALT831_03733 PF09297 NADH pyrophosphatase zinc ribbon domain ALT831_03734 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ALT831_03735 PF01475 Ferric uptake regulator family ALT831_03737 PF01894 Uncharacterised protein family UPF0047 ALT831_03738 PF00691 OmpA family ALT831_03738 PF05736 OprF membrane domain ALT831_03739 PF00772 DnaB-like helicase N terminal domain ALT831_03739 PF03796 DnaB-like helicase C terminal domain ALT831_03744 PF03473 MOSC domain ALT831_03744 PF03475 3-alpha domain ALT831_03746 PF00072 Response regulator receiver domain ALT831_03746 PF00486 Transcriptional regulatory protein, C terminal ALT831_03747 PF00672 HAMP domain ALT831_03747 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03747 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03747 PF16750 Sensor domain of 2-component histidine kinase ALT831_03751 PF00873 AcrB/AcrD/AcrF family ALT831_03752 PF03948 Ribosomal protein L9, C-terminal domain ALT831_03752 PF01281 Ribosomal protein L9, N-terminal domain ALT831_03753 PF01084 Ribosomal protein S18 ALT831_03754 PF01250 Ribosomal protein S6 ALT831_03756 PF00005 ABC transporter ALT831_03758 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_03758 PF08447 PAS fold ALT831_03759 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03759 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03759 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALT831_03760 PF00672 HAMP domain ALT831_03760 PF02743 Cache domain ALT831_03760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALT831_03763 PF03601 Conserved hypothetical protein 698 ALT831_03764 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ALT831_03765 PF00248 Aldo/keto reductase family ALT831_03769 PF00474 Sodium:solute symporter family ALT831_03770 PF07715 TonB-dependent Receptor Plug Domain ALT831_03770 PF00593 TonB dependent receptor ALT831_03771 PF01545 Cation efflux family ALT831_03771 PF16916 Dimerisation domain of Zinc Transporter ALT831_03772 PF00722 Glycosyl hydrolases family 16 ALT831_03774 PF08448 PAS fold ALT831_03774 PF00990 Diguanylate cyclase, GGDEF domain ALT831_03775 PF03553 Na+/H+ antiporter family ALT831_03776 PF14310 Fibronectin type III-like domain ALT831_03776 PF00933 Glycosyl hydrolase family 3 N terminal domain ALT831_03776 PF01915 Glycosyl hydrolase family 3 C-terminal domain ALT831_03777 PF07690 Major Facilitator Superfamily ALT831_03778 PF00232 Glycosyl hydrolase family 1 ALT831_03779 PF00356 Bacterial regulatory proteins, lacI family ALT831_03780 PF00083 Sugar (and other) transporter ALT831_03781 PF00664 ABC transporter transmembrane region ALT831_03781 PF00005 ABC transporter ALT831_03782 PF00664 ABC transporter transmembrane region ALT831_03782 PF00005 ABC transporter ALT831_03783 PF08173 Membrane bound YbgT-like protein ALT831_03784 PF02322 Cytochrome bd terminal oxidase subunit II ALT831_03785 PF01654 Cytochrome bd terminal oxidase subunit I ALT831_03787 PF02954 Bacterial regulatory protein, Fis family ALT831_03787 PF00072 Response regulator receiver domain ALT831_03787 PF00158 Sigma-54 interaction domain ALT831_03792 PF13474 SnoaL-like domain ALT831_03793 PF00857 Isochorismatase family ALT831_03794 PF00034 Cytochrome c ALT831_03796 PF02678 Pirin ALT831_03796 PF05726 Pirin C-terminal cupin domain ALT831_03800 PF00593 TonB dependent receptor ALT831_03800 PF07715 TonB-dependent Receptor Plug Domain ALT831_03803 PF02649 Type I GTP cyclohydrolase folE2 ALT831_03814 PF05532 CsbD-like ALT831_03817 PF04542 Sigma-70 region 2 ALT831_03817 PF08281 Sigma-70, region 4 ALT831_03822 PF00472 RF-1 domain ALT831_03823 PF00561 alpha/beta hydrolase fold ALT831_03823 PF00364 Biotin-requiring enzyme ALT831_03828 PF01292 Prokaryotic cytochrome b561 ALT831_03829 PF04264 YceI-like domain ALT831_03830 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALT831_03831 PF07715 TonB-dependent Receptor Plug Domain ALT831_03831 PF00593 TonB dependent receptor ALT831_03833 PF01048 Phosphorylase superfamily ALT831_03834 PF03466 LysR substrate binding domain ALT831_03834 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_03835 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ALT831_03836 PF00107 Zinc-binding dehydrogenase ALT831_03836 PF16884 N-terminal domain of oxidoreductase ALT831_03837 PF01590 GAF domain ALT831_03837 PF00563 EAL domain ALT831_03837 PF00990 Diguanylate cyclase, GGDEF domain ALT831_03837 PF00360 Phytochrome region ALT831_03838 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03838 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03838 PF09308 LuxQ, periplasmic ALT831_03838 PF00072 Response regulator receiver domain ALT831_03840 PF00296 Luciferase-like monooxygenase ALT831_03841 PF01380 SIS domain ALT831_03842 PF08220 DeoR-like helix-turn-helix domain ALT831_03842 PF00455 DeoR C terminal sensor domain ALT831_03843 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ALT831_03843 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ALT831_03844 PF12804 MobA-like NTP transferase domain ALT831_03844 PF00132 Bacterial transferase hexapeptide (six repeats) ALT831_03844 PF14602 Hexapeptide repeat of succinyl-transferase ALT831_03846 PF00892 EamA-like transporter family ALT831_03847 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALT831_03847 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALT831_03848 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain ALT831_03848 PF00730 HhH-GPD superfamily base excision DNA repair protein ALT831_03849 PF00144 Beta-lactamase ALT831_03850 PF17810 Arginine decarboxylase helical bundle domain ALT831_03850 PF17944 Arginine decarboxylase C-terminal helical extension ALT831_03850 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ALT831_03852 PF02233 NAD(P) transhydrogenase beta subunit ALT831_03853 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ALT831_03854 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ALT831_03854 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ALT831_03856 PF04820 Tryptophan halogenase ALT831_03862 PF00593 TonB dependent receptor ALT831_03862 PF07715 TonB-dependent Receptor Plug Domain ALT831_03870 PF01040 UbiA prenyltransferase family ALT831_03871 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ALT831_03872 PF00510 Cytochrome c oxidase subunit III ALT831_03873 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALT831_03874 PF06481 COX Aromatic Rich Motif ALT831_03874 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ALT831_03879 PF00544 Pectate lyase ALT831_03880 PF00118 TCP-1/cpn60 chaperonin family ALT831_03881 PF00166 Chaperonin 10 Kd subunit ALT831_03883 PF03091 CutA1 divalent ion tolerance protein ALT831_03884 PF02683 Cytochrome C biogenesis protein transmembrane region ALT831_03884 PF11412 Disulphide bond corrector protein DsbC ALT831_03885 PF01551 Peptidase family M23 ALT831_03886 PF01220 Dehydroquinase class II ALT831_03887 PF00364 Biotin-requiring enzyme ALT831_03888 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALT831_03888 PF00289 Biotin carboxylase, N-terminal domain ALT831_03888 PF02785 Biotin carboxylase C-terminal domain ALT831_03892 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALT831_03892 PF00929 Exonuclease ALT831_03892 PF02811 PHP domain ALT831_03892 PF14579 Helix-hairpin-helix motif ALT831_03892 PF11490 DNA polymerase III polC-type N-terminus II ALT831_03892 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALT831_03895 PF01355 High potential iron-sulfur protein ALT831_03896 PF01425 Amidase ALT831_03899 PF01207 Dihydrouridine synthase (Dus) ALT831_03900 PF02954 Bacterial regulatory protein, Fis family ALT831_03901 PF02142 MGS-like domain ALT831_03901 PF01808 AICARFT/IMPCHase bienzyme ALT831_03903 PF02844 Phosphoribosylglycinamide synthetase, N domain ALT831_03903 PF02843 Phosphoribosylglycinamide synthetase, C domain ALT831_03903 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ALT831_03906 PF00520 Ion transport protein ALT831_03906 PF00027 Cyclic nucleotide-binding domain ALT831_03907 PF00485 Phosphoribulokinase / Uridine kinase family ALT831_03909 PF00072 Response regulator receiver domain ALT831_03909 PF00486 Transcriptional regulatory protein, C terminal ALT831_03910 PF00512 His Kinase A (phospho-acceptor) domain ALT831_03910 PF00672 HAMP domain ALT831_03910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_03912 PF01055 Glycosyl hydrolases family 31 ALT831_03912 PF13802 Galactose mutarotase-like ALT831_03912 PF17137 Domain of unknown function (DUF5110) ALT831_03912 PF16338 Domain of unknown function (DUF4968) ALT831_03913 PF01293 Phosphoenolpyruvate carboxykinase ALT831_03914 PF01430 Hsp33 protein ALT831_03915 PF01479 S4 domain ALT831_03916 PF11356 Type II secretion system protein C ALT831_03917 PF03958 Bacterial type II/III secretion system short domain ALT831_03917 PF00263 Bacterial type II and III secretion system protein ALT831_03918 PF00437 Type II/IV secretion system protein ALT831_03919 PF00482 Type II secretion system (T2SS), protein F ALT831_03920 PF07963 Prokaryotic N-terminal methylation motif ALT831_03920 PF08334 Type II secretion system (T2SS), protein G ALT831_03921 PF12019 Type II transport protein GspH ALT831_03922 PF02501 Type II secretion system (T2SS), protein I ALT831_03922 PF07963 Prokaryotic N-terminal methylation motif ALT831_03923 PF11612 Type II secretion system (T2SS), protein J ALT831_03923 PF07963 Prokaryotic N-terminal methylation motif ALT831_03925 PF05134 Type II secretion system (T2SS), protein L ALT831_03925 PF12693 GspL periplasmic domain ALT831_03926 PF04612 Type II secretion system (T2SS), protein M ALT831_03929 PF12706 Beta-lactamase superfamily domain ALT831_03930 PF00171 Aldehyde dehydrogenase family ALT831_03931 PF01931 Protein of unknown function DUF84 ALT831_03932 PF13419 Haloacid dehalogenase-like hydrolase ALT831_03933 PF00293 NUDIX domain ALT831_03934 PF00459 Inositol monophosphatase family ALT831_03936 PF00535 Glycosyl transferase family 2 ALT831_03937 PF04349 Periplasmic glucan biosynthesis protein, MdoG ALT831_03939 PF06794 Uncharacterised protein family (UPF0270) ALT831_03940 PF00561 alpha/beta hydrolase fold ALT831_03942 PF12848 ABC transporter ALT831_03942 PF00005 ABC transporter ALT831_03946 PF04102 SlyX ALT831_03948 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ALT831_03948 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALT831_03950 PF03449 Transcription elongation factor, N-terminal ALT831_03950 PF01272 Transcription elongation factor, GreA/GreB, C-term ALT831_03951 PF16921 Tex protein YqgF-like domain ALT831_03951 PF09371 Tex-like protein N-terminal domain ALT831_03951 PF00575 S1 RNA binding domain ALT831_03951 PF17674 HHH domain ALT831_03952 PF04820 Tryptophan halogenase ALT831_03956 PF12833 Helix-turn-helix domain ALT831_03958 PF04616 Glycosyl hydrolases family 43 ALT831_03962 PF00553 Cellulose binding domain ALT831_03962 PF00331 Glycosyl hydrolase family 10 ALT831_03962 PF03422 Carbohydrate binding module (family 6) ALT831_03963 PF00248 Aldo/keto reductase family ALT831_03964 PF02780 Transketolase, C-terminal domain ALT831_03964 PF00456 Transketolase, thiamine diphosphate binding domain ALT831_03964 PF02779 Transketolase, pyrimidine binding domain ALT831_03966 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ALT831_03966 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ALT831_03967 PF00923 Transaldolase/Fructose-6-phosphate aldolase ALT831_03969 PF14310 Fibronectin type III-like domain ALT831_03969 PF00933 Glycosyl hydrolase family 3 N terminal domain ALT831_03969 PF01915 Glycosyl hydrolase family 3 C-terminal domain ALT831_03970 PF00083 Sugar (and other) transporter ALT831_03974 PF06964 Alpha-L-arabinofuranosidase C-terminal domain ALT831_03978 PF00561 alpha/beta hydrolase fold ALT831_03979 PF00156 Phosphoribosyl transferase domain ALT831_03981 PF01106 NifU-like domain ALT831_03981 PF01521 Iron-sulphur cluster biosynthesis ALT831_03982 PF01177 Asp/Glu/Hydantoin racemase ALT831_03985 PF01554 MatE ALT831_03988 PF02630 SCO1/SenC ALT831_03989 PF01040 UbiA prenyltransferase family ALT831_03990 PF02628 Cytochrome oxidase assembly protein ALT831_03994 PF00510 Cytochrome c oxidase subunit III ALT831_03995 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 ALT831_03996 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALT831_03997 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ALT831_03997 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ALT831_03998 PF00717 Peptidase S24-like ALT831_03998 PF01726 LexA DNA binding domain ALT831_04000 PF17151 Periplasmic sensor domain ALT831_04000 PF00990 Diguanylate cyclase, GGDEF domain ALT831_04001 PF01553 Acyltransferase ALT831_04002 PF00291 Pyridoxal-phosphate dependent enzyme ALT831_04002 PF00585 C-terminal regulatory domain of Threonine dehydratase ALT831_04003 PF00920 Dehydratase family ALT831_04004 PF03458 UPF0126 domain ALT831_04005 PF13335 Magnesium chelatase, subunit ChlI C-terminal ALT831_04005 PF01078 Magnesium chelatase, subunit ChlI ALT831_04006 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALT831_04006 PF03466 LysR substrate binding domain ALT831_04007 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ALT831_04007 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ALT831_04008 PF07690 Major Facilitator Superfamily ALT831_04009 PF00326 Prolyl oligopeptidase family ALT831_04010 PF17243 POTRA domain TamA domain 1 ALT831_04010 PF07244 Surface antigen variable number repeat ALT831_04010 PF01103 Surface antigen ALT831_04011 PF04357 TamB, inner membrane protein subunit of TAM complex ALT831_04016 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALT831_04016 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALT831_04018 PF01472 PUA domain ALT831_04018 PF00696 Amino acid kinase family ALT831_04022 PF03109 ABC1 family ALT831_04027 PF01979 Amidohydrolase family ALT831_04031 PF01206 Sulfurtransferase TusA ALT831_04032 PF00156 Phosphoribosyl transferase domain ALT831_04033 PF03725 3' exoribonuclease family, domain 2 ALT831_04033 PF01138 3' exoribonuclease family, domain 1 ALT831_04034 PF03755 YicC-like family, N-terminal region ALT831_04034 PF08340 Domain of unknown function (DUF1732) ALT831_04035 PF04820 Tryptophan halogenase ALT831_04036 PF04820 Tryptophan halogenase ALT831_04038 PF00232 Glycosyl hydrolase family 1 ALT831_04040 PF00356 Bacterial regulatory proteins, lacI family ALT831_04043 PF00691 OmpA family ALT831_04043 PF05736 OprF membrane domain ALT831_04044 PF01966 HD domain ALT831_04047 PF02798 Glutathione S-transferase, N-terminal domain ALT831_04047 PF00043 Glutathione S-transferase, C-terminal domain ALT831_04049 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ALT831_04049 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ALT831_04050 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALT831_04050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALT831_04051 PF00231 ATP synthase ALT831_04052 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALT831_04052 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALT831_04052 PF00306 ATP synthase alpha/beta chain, C terminal domain ALT831_04053 PF00213 ATP synthase delta (OSCP) subunit ALT831_04054 PF00430 ATP synthase B/B' CF(0) ALT831_04055 PF00137 ATP synthase subunit C ALT831_04056 PF00119 ATP synthase A chain ALT831_04058 PF02195 ParB-like nuclease domain ALT831_04058 PF17762 HTH domain found in ParB protein ALT831_04059 PF13614 AAA domain ALT831_04060 PF02527 rRNA small subunit methyltransferase G ALT831_04061 PF13932 GidA associated domain ALT831_04061 PF01134 Glucose inhibited division protein A ALT831_04064 PF00258 Flavodoxin ALT831_04065 PF10396 GTP-binding protein TrmE N-terminus ALT831_04065 PF12631 MnmE helical domain ALT831_04065 PF01926 50S ribosome-binding GTPase ALT831_04066 PF04461 Protein of unknown function (DUF520) ALT831_04067 PF02096 60Kd inner membrane protein ALT831_04067 PF14849 YidC periplasmic domain ALT831_04068 PF01809 Putative membrane protein insertion efficiency factor ALT831_04069 PF00825 Ribonuclease P ALT831_04070 PF00468 Ribosomal protein L34 ALT831_04073 PF01810 LysE type translocator ALT831_04074 PF12833 Helix-turn-helix domain ALT831_04074 PF02311 AraC-like ligand binding domain ALT831_04075 PF02548 Ketopantoate hydroxymethyltransferase ALT831_04076 PF01810 LysE type translocator ALT831_04077 PF01037 Lrp/AsnC ligand binding domain ALT831_04082 PF13592 Winged helix-turn helix ALT831_04082 PF13358 DDE superfamily endonuclease ALT831_04084 PF13340 Putative transposase of IS4/5 family (DUF4096) ALT831_04086 PF01381 Helix-turn-helix ALT831_04087 PF07804 HipA-like C-terminal domain ALT831_04087 PF13657 HipA N-terminal domain ALT831_04096 PF00239 Resolvase, N terminal domain ALT831_04096 PF02796 Helix-turn-helix domain of resolvase ALT831_04100 PF13276 HTH-like domain ALT831_04100 PF00665 Integrase core domain ALT831_04100 PF13333 Integrase core domain ALT831_04101 PF00665 Integrase core domain ALT831_04101 PF13333 Integrase core domain ALT831_04101 PF13276 HTH-like domain ALT831_04102 PF01527 Transposase ALT831_04105 PF13614 AAA domain ALT831_04106 PF17762 HTH domain found in ParB protein ALT831_04106 PF02195 ParB-like nuclease domain ALT831_04116 PF00672 HAMP domain ALT831_04116 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_04116 PF00512 His Kinase A (phospho-acceptor) domain ALT831_04117 PF00072 Response regulator receiver domain ALT831_04117 PF00486 Transcriptional regulatory protein, C terminal ALT831_04121 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALT831_04122 PF00873 AcrB/AcrD/AcrF family ALT831_04132 PF08031 Berberine and berberine like ALT831_04132 PF01565 FAD binding domain ALT831_04139 PF00970 Oxidoreductase FAD-binding domain ALT831_04139 PF00042 Globin ALT831_04139 PF00175 Oxidoreductase NAD-binding domain ALT831_04143 PF01750 Hydrogenase maturation protease ALT831_04145 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ALT831_04145 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ALT831_04146 PF00374 Nickel-dependent hydrogenase ALT831_04148 PF01455 HupF/HypC family ALT831_04149 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ALT831_04150 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALT831_04151 PF01924 Hydrogenase formation hypA family ALT831_04152 PF17788 HypF Kae1-like domain ALT831_04152 PF00708 Acylphosphatase ALT831_04152 PF07503 HypF finger ALT831_04152 PF01300 Telomere recombination ALT831_04153 PF00586 AIR synthase related protein, N-terminal domain ALT831_04153 PF02769 AIR synthase related protein, C-terminal domain ALT831_04154 PF09278 MerR, DNA binding ALT831_04154 PF00376 MerR family regulatory protein ALT831_04155 PF00403 Heavy-metal-associated domain ALT831_04169 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALT831_04169 PF00529 HlyD membrane-fusion protein of T1SS ALT831_04170 PF00873 AcrB/AcrD/AcrF family ALT831_04171 PF16916 Dimerisation domain of Zinc Transporter ALT831_04171 PF01545 Cation efflux family ALT831_04173 PF01219 Prokaryotic diacylglycerol kinase ALT831_04174 PF08019 Phosphoethanolamine transferase EptA/EptB ALT831_04174 PF00884 Sulfatase ALT831_04175 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ALT831_04177 PF00535 Glycosyl transferase family 2 ALT831_04178 PF00072 Response regulator receiver domain ALT831_04178 PF00486 Transcriptional regulatory protein, C terminal ALT831_04179 PF00672 HAMP domain ALT831_04179 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALT831_04179 PF00512 His Kinase A (phospho-acceptor) domain ALT831_04186 PF02911 Formyl transferase, C-terminal domain ALT831_04186 PF00551 Formyl transferase ALT831_04188 PF09278 MerR, DNA binding ALT831_04188 PF00376 MerR family regulatory protein ALT831_04189 PF00403 Heavy-metal-associated domain ALT831_04196 PF13520 Amino acid permease ALT831_04198 PF00394 Multicopper oxidase ALT831_04198 PF07731 Multicopper oxidase ALT831_04198 PF07732 Multicopper oxidase ALT831_04203 PF03527 RHS protein ALT831_04203 PF05593 RHS Repeat ALT831_04205 PF13411 MerR HTH family regulatory protein ALT831_04209 PF00529 HlyD membrane-fusion protein of T1SS ALT831_04209 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALT831_04210 PF00873 AcrB/AcrD/AcrF family ALT831_04214 PF13340 Putative transposase of IS4/5 family (DUF4096) ALT831_04216 PF00376 MerR family regulatory protein ALT831_04216 PF09278 MerR, DNA binding ALT831_04217 PF02411 MerT mercuric transport protein ALT831_04218 PF00403 Heavy-metal-associated domain ALT831_04219 PF03203 MerC mercury resistance protein ALT831_04220 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALT831_04220 PF00403 Heavy-metal-associated domain ALT831_04220 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALT831_04221 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ALT831_04222 PF00005 ABC transporter