locus-tag	class	description
ALTBGP9_00003	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ALTBGP9_00010	COG2818	Glycosylase
ALTBGP9_00012	COG3078	GTPase activator activity
ALTBGP9_00016	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ALTBGP9_00016	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ALTBGP9_00017	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
ALTBGP9_00018	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ALTBGP9_00019	COG0569	domain protein
ALTBGP9_00020	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ALTBGP9_00020	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ALTBGP9_00024	COG0758	DNA mediated transformation
ALTBGP9_00027	COG0009	L-threonylcarbamoyladenylate synthase
ALTBGP9_00028	COG0408	coproporphyrinogen oxidase activity
ALTBGP9_00029	COG3047	cAMP biosynthetic process
ALTBGP9_00032	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ALTBGP9_00047	COG2234	aminopeptidase activity
ALTBGP9_00049	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ALTBGP9_00054	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ALTBGP9_00060	COG3642	lipopolysaccharide core region biosynthetic process
ALTBGP9_00066	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ALTBGP9_00069	COG3161	chorismate lyase activity
ALTBGP9_00070	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
ALTBGP9_00072	COG0210	DNA helicase
ALTBGP9_00080	COG0604	alcohol dehydrogenase
ALTBGP9_00080	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ALTBGP9_00080	COG3321	synthase
ALTBGP9_00080	COG4221	oxidoreductase activity
ALTBGP9_00081	COG4221	oxidoreductase activity
ALTBGP9_00082	COG0583	DNA-binding transcription factor activity
ALTBGP9_00086	COG3321	synthase
ALTBGP9_00086	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_00086	COG0604	alcohol dehydrogenase
ALTBGP9_00088	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ALTBGP9_00089	COG1902	pentaerythritol trinitrate reductase activity
ALTBGP9_00090	COG1012	belongs to the aldehyde dehydrogenase family
ALTBGP9_00100	COG1012	belongs to the aldehyde dehydrogenase family
ALTBGP9_00101	COG3829	transcription factor binding
ALTBGP9_00103	COG1454	alcohol dehydrogenase
ALTBGP9_00133	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ALTBGP9_00134	COG0842	Transport permease protein
ALTBGP9_00134	COG1129	ABC transporter
ALTBGP9_00135	COG0842	Transport permease protein
ALTBGP9_00140	COG0583	DNA-binding transcription factor activity
ALTBGP9_00142	COG3106	COG3106 Predicted ATPase
ALTBGP9_00145	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
ALTBGP9_00148	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ALTBGP9_00149	COG0352	thiamine-phosphate diphosphorylase activity
ALTBGP9_00152	COG3071	HemY protein
ALTBGP9_00153	COG2959	enzyme of heme biosynthesis
ALTBGP9_00155	COG0181	hydroxymethylbilane synthase activity
ALTBGP9_00158	COG0194	GDP metabolic process
ALTBGP9_00160	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ALTBGP9_00162	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ALTBGP9_00163	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ALTBGP9_00165	COG0678	peroxiredoxin activity
ALTBGP9_00168	COG1178	ABC-type Fe3 transport system permease component
ALTBGP9_00169	COG3842	ATPase activity
ALTBGP9_00170	COG2081	HI0933 family
ALTBGP9_00171	COG3047	cAMP biosynthetic process
ALTBGP9_00174	COG2200	EAL domain
ALTBGP9_00175	COG5001	Diguanylate cyclase
ALTBGP9_00181	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ALTBGP9_00184	COG0427	acetyl-CoA hydrolase
ALTBGP9_00185	COG0123	including yeast histone deacetylase and acetoin utilization protein
ALTBGP9_00188	COG0840	transmembrane signaling receptor activity
ALTBGP9_00190	COG3064	Membrane
ALTBGP9_00192	COG5001	Diguanylate cyclase
ALTBGP9_00192	COG5002	protein histidine kinase activity
ALTBGP9_00195	COG0514	ATP-dependent DNA helicase (RecQ)
ALTBGP9_00196	COG2050	protein possibly involved in aromatic compounds catabolism
ALTBGP9_00197	COG2239	Acts as a magnesium transporter
ALTBGP9_00198	COG2962	Rard protein
ALTBGP9_00199	COG3706	GGDEF domain
ALTBGP9_00200	COG0210	DNA helicase
ALTBGP9_00202	COG3706	GGDEF domain
ALTBGP9_00203	COG1011	Hydrolase
ALTBGP9_00204	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ALTBGP9_00206	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
ALTBGP9_00207	COG0019	diaminopimelate decarboxylase activity
ALTBGP9_00214	COG0163	prenyltransferase activity
ALTBGP9_00215	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ALTBGP9_00217	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ALTBGP9_00224	COG1077	Cell shape determining protein MreB Mrl
ALTBGP9_00226	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ALTBGP9_00227	COG2814	Major facilitator Superfamily
ALTBGP9_00228	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ALTBGP9_00235	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
ALTBGP9_00237	COG0629	single-stranded DNA binding
ALTBGP9_00241	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ALTBGP9_00244	COG1349	DNA-binding transcription factor activity
ALTBGP9_00253	COG3267	Type II secretory pathway component ExeA
ALTBGP9_00253	COG3409	Peptidoglycan-binding domain 1 protein
ALTBGP9_00255	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ALTBGP9_00256	COG1459	type II secretion system
ALTBGP9_00258	COG2165	general secretion pathway protein
ALTBGP9_00259	COG2165	general secretion pathway protein
ALTBGP9_00265	COG1077	Cell shape determining protein MreB Mrl
ALTBGP9_00266	COG1792	Involved in formation and maintenance of cell shape
ALTBGP9_00267	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
ALTBGP9_00269	COG1530	ribonuclease E activity
ALTBGP9_00271	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ALTBGP9_00272	COG0312	modulator of DNA gyrase
ALTBGP9_00274	COG3028	Belongs to the UPF0307 family
ALTBGP9_00275	COG0312	modulator of DNA gyrase
ALTBGP9_00278	COG0745	RESPONSE REGULATOR receiver
ALTBGP9_00279	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALTBGP9_00279	COG4191	Histidine kinase
ALTBGP9_00280	COG0297	glycogen (starch) synthase activity
ALTBGP9_00282	COG0220	tRNA (guanine-N7-)-methyltransferase activity
ALTBGP9_00293	COG4974	Belongs to the 'phage' integrase family
ALTBGP9_00311	COG0745	RESPONSE REGULATOR receiver
ALTBGP9_00312	COG0643	Histidine kinase
ALTBGP9_00312	COG2198	Histidine kinase
ALTBGP9_00313	COG0835	chemotaxis
ALTBGP9_00316	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
ALTBGP9_00319	COG0745	RESPONSE REGULATOR receiver
ALTBGP9_00320	COG0643	Histidine kinase
ALTBGP9_00320	COG2198	Histidine kinase
ALTBGP9_00321	COG0835	chemotaxis
ALTBGP9_00325	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
ALTBGP9_00335	COG0546	phosphoglycolate phosphatase activity
ALTBGP9_00337	COG0784	Response regulator, receiver
ALTBGP9_00337	COG2205	protein histidine kinase activity
ALTBGP9_00340	COG1609	Transcriptional regulator
ALTBGP9_00341	COG0673	inositol 2-dehydrogenase activity
ALTBGP9_00343	COG2211	Major facilitator Superfamily
ALTBGP9_00348	COG1454	alcohol dehydrogenase
ALTBGP9_00359	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ALTBGP9_00363	COG0089	rRNA binding
ALTBGP9_00365	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
ALTBGP9_00367	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
ALTBGP9_00370	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ALTBGP9_00372	COG1519	Transferase
ALTBGP9_00380	COG0788	formyltetrahydrofolate deformylase activity
ALTBGP9_00382	COG1643	Atp-dependent helicase
ALTBGP9_00384	COG2951	lytic endotransglycosylase activity
ALTBGP9_00385	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ALTBGP9_00388	COG2354	Protein conserved in bacteria
ALTBGP9_00393	COG0004	ammonium transporteR
ALTBGP9_00394	COG0405	Gamma-glutamyltransferase
ALTBGP9_00395	COG2837	iron assimilation
ALTBGP9_00398	COG0540	Belongs to the ATCase OTCase family
ALTBGP9_00403	COG5002	protein histidine kinase activity
ALTBGP9_00403	COG2205	protein histidine kinase activity
ALTBGP9_00403	COG0784	Response regulator, receiver
ALTBGP9_00406	COG5001	Diguanylate cyclase
ALTBGP9_00406	COG3300	MHYT domain
ALTBGP9_00408	COG1012	belongs to the aldehyde dehydrogenase family
ALTBGP9_00410	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ALTBGP9_00412	COG0512	Glutamine amidotransferase of anthranilate synthase
ALTBGP9_00413	COG0180	Tryptophanyl-tRNA synthetase
ALTBGP9_00414	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
ALTBGP9_00418	COG0338	D12 class N6 adenine-specific DNA methyltransferase
ALTBGP9_00420	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
ALTBGP9_00427	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
ALTBGP9_00428	COG0281	malic enzyme
ALTBGP9_00430	COG0625	glutathione transferase activity
ALTBGP9_00433	COG0753	catalase activity
ALTBGP9_00438	COG3300	MHYT domain
ALTBGP9_00438	COG5001	Diguanylate cyclase
ALTBGP9_00439	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ALTBGP9_00439	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
ALTBGP9_00441	COG0137	argininosuccinate synthase activity
ALTBGP9_00445	COG1803	Methylglyoxal synthase
ALTBGP9_00447	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
ALTBGP9_00450	COG0745	RESPONSE REGULATOR receiver
ALTBGP9_00451	COG2205	protein histidine kinase activity
ALTBGP9_00452	COG2267	carboxylic ester hydrolase activity
ALTBGP9_00453	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ALTBGP9_00454	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ALTBGP9_00455	COG0577	efflux transmembrane transporter activity
ALTBGP9_00455	COG1136	(ABC) transporter
ALTBGP9_00458	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
ALTBGP9_00460	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
ALTBGP9_00461	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ALTBGP9_00462	COG4942	peptidase
ALTBGP9_00463	COG2861	carbohydrate metabolic process
ALTBGP9_00465	COG0584	glycerophosphoryl diester phosphodiesterase
ALTBGP9_00468	COG1162	GTPase activity
ALTBGP9_00469	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
ALTBGP9_00476	COG0028	Belongs to the TPP enzyme family
ALTBGP9_00480	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ALTBGP9_00481	COG0805	protein transport
ALTBGP9_00483	COG0084	hydrolase, TatD family'
ALTBGP9_00484	COG2203	Gaf domain
ALTBGP9_00484	COG4251	negative regulation of phosphorylation
ALTBGP9_00484	COG5001	Diguanylate cyclase
ALTBGP9_00484	COG3706	GGDEF domain
ALTBGP9_00486	COG0248	Ppx GppA phosphatase
ALTBGP9_00487	COG0513	Belongs to the DEAD box helicase family
ALTBGP9_00488	COG3118	belongs to the thioredoxin family
ALTBGP9_00489	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
ALTBGP9_00490	COG1473	amidohydrolase
ALTBGP9_00491	COG2205	protein histidine kinase activity
ALTBGP9_00491	COG0784	Response regulator, receiver
ALTBGP9_00492	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
ALTBGP9_00493	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
ALTBGP9_00494	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
ALTBGP9_00497	COG0783	Belongs to the Dps family
ALTBGP9_00498	COG2133	pyrroloquinoline quinone binding
ALTBGP9_00499	COG1506	peptidase
ALTBGP9_00499	COG4946	Tricorn protease homolog
ALTBGP9_00499	COG0823	Involved in the tonB-independent uptake of proteins
ALTBGP9_00501	COG3118	belongs to the thioredoxin family
ALTBGP9_00504	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
ALTBGP9_00506	COG1012	belongs to the aldehyde dehydrogenase family
ALTBGP9_00511	COG1757	Na H antiporter
ALTBGP9_00514	COG3876	Protein conserved in bacteria
ALTBGP9_00515	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
ALTBGP9_00519	COG0346	lactoylglutathione lyase activity
ALTBGP9_00526	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
ALTBGP9_00528	COG2824	Alkylphosphonate utilization operon protein PhnA
ALTBGP9_00529	COG0454	-acetyltransferase
ALTBGP9_00531	COG1742	UPF0060 membrane protein
ALTBGP9_00546	COG0183	Belongs to the thiolase family
ALTBGP9_00547	COG1024	Enoyl-CoA hydratase
ALTBGP9_00547	COG1250	3-hydroxyacyl-CoA dehydrogenase
ALTBGP9_00548	COG0739	heme binding
ALTBGP9_00548	COG0741	lytic transglycosylase activity
ALTBGP9_00548	COG1196	nuclear chromosome segregation
ALTBGP9_00549	COG0006	proline dipeptidase activity
ALTBGP9_00551	COG0142	geranyltranstransferase activity
ALTBGP9_00560	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ALTBGP9_00561	COG1388	LysM domain
ALTBGP9_00561	COG4942	peptidase
ALTBGP9_00562	COG1238	metal cluster binding
ALTBGP9_00564	COG0585	pseudouridine synthase activity
ALTBGP9_00565	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
ALTBGP9_00567	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
ALTBGP9_00569	COG0840	transmembrane signaling receptor activity
ALTBGP9_00570	COG0506	proline dehydrogenase activity
ALTBGP9_00570	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
ALTBGP9_00570	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
ALTBGP9_00573	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ALTBGP9_00580	COG0494	nUDIX hydrolase
ALTBGP9_00581	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
ALTBGP9_00582	COG0730	response to heat
ALTBGP9_00583	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
ALTBGP9_00584	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
ALTBGP9_00586	COG3706	GGDEF domain
ALTBGP9_00587	COG4999	Histidine kinase
ALTBGP9_00587	COG2205	protein histidine kinase activity
ALTBGP9_00587	COG3437	response regulator, receiver
ALTBGP9_00587	COG3850	Histidine kinase
ALTBGP9_00588	COG2211	Major facilitator Superfamily
ALTBGP9_00592	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
ALTBGP9_00595	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
ALTBGP9_00596	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ALTBGP9_00600	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ALTBGP9_00600	COG1648	precorrin-2 dehydrogenase activity
ALTBGP9_00601	COG0513	Belongs to the DEAD box helicase family
ALTBGP9_00605	COG1538	Outer membrane efflux protein
ALTBGP9_00606	COG0494	nUDIX hydrolase
ALTBGP9_00608	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
ALTBGP9_00609	COG3150	esterase
ALTBGP9_00612	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ALTBGP9_00616	COG1509	lysine 2,3-aminomutase activity
ALTBGP9_00617	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
ALTBGP9_00622	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ALTBGP9_00626	COG0271	Belongs to the BolA IbaG family
ALTBGP9_00629	COG3707	response regulator
ALTBGP9_00631	COG0659	secondary active sulfate transmembrane transporter activity
ALTBGP9_00632	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ALTBGP9_00633	COG2146	nitrite reductase [NAD(P)H] activity
ALTBGP9_00634	COG0243	molybdopterin cofactor binding
ALTBGP9_00635	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ALTBGP9_00635	COG1648	precorrin-2 dehydrogenase activity
ALTBGP9_00637	COG0737	Belongs to the 5'-nucleotidase family
ALTBGP9_00638	COG5001	Diguanylate cyclase
ALTBGP9_00638	COG4251	negative regulation of phosphorylation
ALTBGP9_00638	COG2203	Gaf domain
ALTBGP9_00638	COG3706	GGDEF domain
ALTBGP9_00641	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ALTBGP9_00641	COG1116	anion transmembrane transporter activity
ALTBGP9_00643	COG1116	anion transmembrane transporter activity
ALTBGP9_00646	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ALTBGP9_00648	COG4206	TonB-dependent receptor
ALTBGP9_00650	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
ALTBGP9_00651	COG0348	domain, Protein
ALTBGP9_00654	COG1960	acyl-CoA dehydrogenase activity
ALTBGP9_00655	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_00657	COG4948	Mandelate Racemase Muconate Lactonizing
ALTBGP9_00660	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ALTBGP9_00661	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ALTBGP9_00665	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ALTBGP9_00666	COG0358	DNA primase activity
ALTBGP9_00671	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
ALTBGP9_00672	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ALTBGP9_00675	COG0537	adenosine 5'-monophosphoramidase activity
ALTBGP9_00678	COG3135	benzoate transporter
ALTBGP9_00681	COG4772	TonB-dependent receptor
ALTBGP9_00682	COG1304	FMN binding
ALTBGP9_00685	COG0723	plastoquinol--plastocyanin reductase activity
ALTBGP9_00687	COG3284	Transcriptional regulator
ALTBGP9_00690	COG1012	belongs to the aldehyde dehydrogenase family
ALTBGP9_00699	COG2201	protein-glutamate methylesterase activity
ALTBGP9_00706	COG0625	glutathione transferase activity
ALTBGP9_00707	COG2969	positive regulation of protein catabolic process
ALTBGP9_00710	COG0745	RESPONSE REGULATOR receiver
ALTBGP9_00711	COG2239	Acts as a magnesium transporter
ALTBGP9_00712	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ALTBGP9_00716	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
ALTBGP9_00717	COG1137	ATPase activity
ALTBGP9_00718	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
ALTBGP9_00720	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ALTBGP9_00723	COG1127	ABC transporter
ALTBGP9_00724	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ALTBGP9_00725	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ALTBGP9_00726	COG2854	intermembrane phospholipid transfer
ALTBGP9_00728	COG5007	Belongs to the BolA IbaG family
ALTBGP9_00730	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ALTBGP9_00731	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ALTBGP9_00733	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ALTBGP9_00739	COG2308	Evidence 4 Homologs of previously reported genes of
ALTBGP9_00740	COG1305	Transglutaminase-like
ALTBGP9_00748	COG4771	TonB-dependent receptor
ALTBGP9_00749	COG0697	spore germination
ALTBGP9_00751	COG2205	protein histidine kinase activity
ALTBGP9_00751	COG0784	Response regulator, receiver
ALTBGP9_00756	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ALTBGP9_00758	COG0126	phosphoglycerate kinase activity
ALTBGP9_00759	COG3588	fructose-bisphosphate aldolase
ALTBGP9_00760	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ALTBGP9_00763	COG5002	protein histidine kinase activity
ALTBGP9_00767	COG1538	Outer membrane efflux protein
ALTBGP9_00769	COG1506	peptidase
ALTBGP9_00769	COG0823	Involved in the tonB-independent uptake of proteins
ALTBGP9_00769	COG4946	Tricorn protease homolog
ALTBGP9_00770	COG0248	Ppx GppA phosphatase
ALTBGP9_00771	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
ALTBGP9_00772	COG2716	regulation of RNA biosynthetic process
ALTBGP9_00773	COG0573	inorganic phosphate transmembrane transporter activity
ALTBGP9_00775	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
ALTBGP9_00777	COG0306	phosphate transporter
ALTBGP9_00779	COG0583	DNA-binding transcription factor activity
ALTBGP9_00784	COG1272	protein, Hemolysin III
ALTBGP9_00786	COG1846	Transcriptional regulator
ALTBGP9_00787	COG1764	response to oxidative stress
ALTBGP9_00790	COG1739	Uncharacterized protein family UPF0029
ALTBGP9_00794	COG0583	DNA-binding transcription factor activity
ALTBGP9_00795	COG4989	oxidoreductase activity
ALTBGP9_00798	COG0420	3'-5' exonuclease activity
ALTBGP9_00799	COG0419	ATPase involved in DNA repair
ALTBGP9_00801	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
ALTBGP9_00805	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
ALTBGP9_00806	COG2986	histidine ammonia-lyase
ALTBGP9_00809	COG2971	BadF BadG BcrA BcrD
ALTBGP9_00810	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ALTBGP9_00812	COG0488	(ABC) transporter
ALTBGP9_00818	COG0668	transmembrane transport
ALTBGP9_00823	COG2814	Major facilitator Superfamily
ALTBGP9_00824	COG0582	viral genome integration into host DNA
ALTBGP9_00827	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ALTBGP9_00841	COG1201	RNA secondary structure unwinding
ALTBGP9_00851	COG1346	cytolysis
ALTBGP9_00857	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ALTBGP9_00858	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
ALTBGP9_00859	COG0513	Belongs to the DEAD box helicase family
ALTBGP9_00863	COG3267	Type II secretory pathway component ExeA
ALTBGP9_00863	COG3409	Peptidoglycan-binding domain 1 protein
ALTBGP9_00868	COG0473	3-isopropylmalate dehydrogenase activity
ALTBGP9_00869	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ALTBGP9_00873	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
ALTBGP9_00877	COG2271	Major facilitator Superfamily
ALTBGP9_00878	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ALTBGP9_00879	COG0800	Aldolase
ALTBGP9_00880	COG2186	Transcriptional regulator
ALTBGP9_00887	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
ALTBGP9_00890	COG4555	ABC transporter
ALTBGP9_00891	COG1668	transmembrane transport
ALTBGP9_00894	COG4133	protoheme IX ABC transporter activity
ALTBGP9_00895	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ALTBGP9_00896	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ALTBGP9_00897	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ALTBGP9_00899	COG1138	Cytochrome C-type biogenesis protein
ALTBGP9_00903	COG2853	Lipoprotein
ALTBGP9_00904	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ALTBGP9_00912	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ALTBGP9_00915	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ALTBGP9_00916	COG1555	photosystem II stabilization
ALTBGP9_00916	COG1596	polysaccharide export
ALTBGP9_00917	COG0473	3-isopropylmalate dehydrogenase activity
ALTBGP9_00920	COG1611	Belongs to the LOG family
ALTBGP9_00930	COG0564	pseudouridine synthase activity
ALTBGP9_00933	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
ALTBGP9_00934	COG0024	Methionine aminopeptidase
ALTBGP9_00936	COG0052	Belongs to the universal ribosomal protein uS2 family
ALTBGP9_00938	COG0528	UMP kinase activity
ALTBGP9_00940	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
ALTBGP9_00941	COG0575	Belongs to the CDS family
ALTBGP9_00943	COG0750	zinc metalloprotease
ALTBGP9_00946	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ALTBGP9_00947	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ALTBGP9_00950	COG0587	DNA-directed DNA polymerase activity
ALTBGP9_00951	COG0825	malonyl-CoA metabolic process
ALTBGP9_00952	COG0037	tRNA processing
ALTBGP9_00959	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ALTBGP9_00959	COG0047	phosphoribosylformylglycinamidine synthase activity
ALTBGP9_00961	COG2840	Smr protein MutS2
ALTBGP9_00969	COG0784	Response regulator, receiver
ALTBGP9_00969	COG0835	chemotaxis
ALTBGP9_00970	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ALTBGP9_00971	COG1815	bacterial-type flagellum-dependent cell motility
ALTBGP9_00974	COG1749	Flagellar hook protein flgE
ALTBGP9_00975	COG4787	bacterial-type flagellum-dependent cell motility
ALTBGP9_00979	COG3951	Flagellar rod assembly protein muramidase FlgJ
ALTBGP9_00979	COG1705	Flagellar rod assembly protein muramidase FlgJ
ALTBGP9_00980	COG1256	bacterial-type flagellum assembly
ALTBGP9_00985	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ALTBGP9_00986	COG1334	flagellar protein FlaG
ALTBGP9_00987	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
ALTBGP9_00995	COG0673	inositol 2-dehydrogenase activity
ALTBGP9_00996	COG1083	cytidylyl-transferase
ALTBGP9_00999	COG2089	acid synthase
ALTBGP9_01000	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_01002	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ALTBGP9_01005	COG1086	Polysaccharide biosynthesis protein
ALTBGP9_01008	COG3475	LICD family
ALTBGP9_01009	COG2089	acid synthase
ALTBGP9_01011	COG1083	cytidylyl-transferase
ALTBGP9_01012	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
ALTBGP9_01017	COG1677	Flagellar hook-basal body complex protein FliE
ALTBGP9_01018	COG1766	The M ring may be actively involved in energy transduction
ALTBGP9_01019	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
ALTBGP9_01029	COG1987	bacterial-type flagellum assembly
ALTBGP9_01033	COG2989	Protein conserved in bacteria
ALTBGP9_01034	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ALTBGP9_01039	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
ALTBGP9_01040	COG0784	Response regulator, receiver
ALTBGP9_01040	COG2198	Histidine kinase
ALTBGP9_01040	COG0643	Histidine kinase
ALTBGP9_01041	COG2201	protein-glutamate methylesterase activity
ALTBGP9_01042	COG1192	Involved in chromosome partitioning
ALTBGP9_01044	COG0835	chemotaxis
ALTBGP9_01047	COG0646	methionine synthase
ALTBGP9_01047	COG1410	methionine synthase
ALTBGP9_01048	COG0646	methionine synthase
ALTBGP9_01048	COG1410	methionine synthase
ALTBGP9_01050	COG3123	guanosine phosphorylase activity
ALTBGP9_01052	COG0583	DNA-binding transcription factor activity
ALTBGP9_01053	COG0583	DNA-binding transcription factor activity
ALTBGP9_01054	COG0288	reversible hydration of carbon dioxide
ALTBGP9_01055	COG0659	secondary active sulfate transmembrane transporter activity
ALTBGP9_01057	COG1309	transcriptional regulator
ALTBGP9_01058	COG3590	peptidase
ALTBGP9_01060	COG2137	regulation of response to DNA damage stimulus
ALTBGP9_01061	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
ALTBGP9_01066	COG1607	acyl-coa hydrolase
ALTBGP9_01068	COG0511	ligase activity, forming carbon-carbon bonds
ALTBGP9_01068	COG5016	pyruvate
ALTBGP9_01069	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
ALTBGP9_01070	COG4172	Belongs to the ABC transporter superfamily
ALTBGP9_01072	COG4171	peptide transport system, permease
ALTBGP9_01073	COG4168	peptide transport system, permease
ALTBGP9_01074	COG0747	negative chemotaxis
ALTBGP9_01075	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
ALTBGP9_01076	COG1842	Phage shock protein A
ALTBGP9_01082	COG0625	glutathione transferase activity
ALTBGP9_01083	COG1522	sequence-specific DNA binding
ALTBGP9_01095	COG0811	peptide transport
ALTBGP9_01096	COG0811	peptide transport
ALTBGP9_01097	COG0848	biopolymer transport protein
ALTBGP9_01100	COG1444	tRNA N-acetyltransferase activity
ALTBGP9_01109	COG0456	acetyltransferase
ALTBGP9_01111	COG0583	DNA-binding transcription factor activity
ALTBGP9_01112	COG2814	Major facilitator Superfamily
ALTBGP9_01113	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ALTBGP9_01114	COG0656	L-ascorbic acid biosynthetic process
ALTBGP9_01118	COG1846	Transcriptional regulator
ALTBGP9_01120	COG3275	phosphorelay sensor kinase activity
ALTBGP9_01121	COG1966	Carbon starvation protein
ALTBGP9_01125	COG0457	Tetratricopeptide repeat
ALTBGP9_01128	COG2197	response regulator
ALTBGP9_01130	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
ALTBGP9_01137	COG0583	DNA-binding transcription factor activity
ALTBGP9_01138	COG0702	epimerase
ALTBGP9_01142	COG1902	pentaerythritol trinitrate reductase activity
ALTBGP9_01145	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
ALTBGP9_01146	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
ALTBGP9_01147	COG0564	pseudouridine synthase activity
ALTBGP9_01149	COG0612	Peptidase, M16
ALTBGP9_01150	COG2918	glutathione biosynthetic process
ALTBGP9_01155	COG2840	Smr protein MutS2
ALTBGP9_01156	COG2890	protein-(glutamine-N5) methyltransferase activity
ALTBGP9_01159	COG2719	SpoVR family
ALTBGP9_01160	COG2718	Belongs to the UPF0229 family
ALTBGP9_01161	COG2766	serine protein kinase
ALTBGP9_01162	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ALTBGP9_01163	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ALTBGP9_01164	COG4771	TonB-dependent receptor
ALTBGP9_01169	COG0450	alkyl hydroperoxide reductase
ALTBGP9_01170	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ALTBGP9_01171	COG2885	chlorophyll binding
ALTBGP9_01172	COG0584	glycerophosphoryl diester phosphodiesterase
ALTBGP9_01173	COG0346	lactoylglutathione lyase activity
ALTBGP9_01174	COG4221	oxidoreductase activity
ALTBGP9_01176	COG1278	Cold shock
ALTBGP9_01179	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ALTBGP9_01180	COG4660	Part of a membrane complex involved in electron transport
ALTBGP9_01181	COG4659	FMN binding
ALTBGP9_01182	COG4658	electron transport chain
ALTBGP9_01183	COG4656	Part of a membrane complex involved in electron transport
ALTBGP9_01184	COG2878	Part of a membrane complex involved in electron transport
ALTBGP9_01185	COG4657	Part of a membrane complex involved in electron transport
ALTBGP9_01188	COG0534	Mate efflux family protein
ALTBGP9_01189	COG0556	nucleotide-excision repair
ALTBGP9_01192	COG0602	queuosine metabolic process
ALTBGP9_01194	COG0367	asparagine synthase
ALTBGP9_01198	COG0471	metal ion transport
ALTBGP9_01198	COG3273	potassium ion transport
ALTBGP9_01201	COG0529	Catalyzes the synthesis of activated sulfate
ALTBGP9_01202	COG0175	sulfate reduction
ALTBGP9_01203	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ALTBGP9_01209	COG2304	oxidoreductase activity
ALTBGP9_01213	COG0714	Associated with various cellular activities
ALTBGP9_01215	COG1024	Enoyl-CoA hydratase
ALTBGP9_01215	COG1250	3-hydroxyacyl-CoA dehydrogenase
ALTBGP9_01219	COG1025	Belongs to the peptidase M16 family
ALTBGP9_01220	COG2062	phosphohistidine phosphatase, SixA
ALTBGP9_01222	COG4536	flavin adenine dinucleotide binding
ALTBGP9_01223	COG4137	Cytochrome C assembly protein
ALTBGP9_01224	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ALTBGP9_01232	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ALTBGP9_01233	COG1132	(ABC) transporter
ALTBGP9_01236	COG0228	four-way junction DNA binding
ALTBGP9_01237	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
ALTBGP9_01238	COG0336	Belongs to the RNA methyltransferase TrmD family
ALTBGP9_01239	COG0335	large ribosomal subunit rRNA binding
ALTBGP9_01240	COG2860	membrane
ALTBGP9_01242	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ALTBGP9_01243	COG0287	Prephenate dehydrogenase
ALTBGP9_01243	COG1605	Chorismate mutase
ALTBGP9_01249	COG0077	Prephenate dehydratase
ALTBGP9_01249	COG1605	Chorismate mutase
ALTBGP9_01250	COG0745	RESPONSE REGULATOR receiver
ALTBGP9_01251	COG0023	Translation Initiation Factor
ALTBGP9_01257	COG2205	protein histidine kinase activity
ALTBGP9_01259	COG2204	response regulator
ALTBGP9_01262	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
ALTBGP9_01263	COG0494	nUDIX hydrolase
ALTBGP9_01264	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
ALTBGP9_01265	COG0632	four-way junction helicase activity
ALTBGP9_01266	COG2255	four-way junction helicase activity
ALTBGP9_01267	COG0824	Thioesterase
ALTBGP9_01268	COG0811	peptide transport
ALTBGP9_01271	COG0823	Involved in the tonB-independent uptake of proteins
ALTBGP9_01272	COG2885	chlorophyll binding
ALTBGP9_01273	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
ALTBGP9_01277	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
ALTBGP9_01285	COG0328	RNA-DNA hybrid ribonuclease activity
ALTBGP9_01289	COG4667	esterase of the alpha-beta hydrolase superfamily
ALTBGP9_01290	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
ALTBGP9_01292	COG0784	Response regulator, receiver
ALTBGP9_01292	COG2205	protein histidine kinase activity
ALTBGP9_01295	COG3038	cytochrome b561
ALTBGP9_01299	COG1451	nucleotide metabolic process
ALTBGP9_01301	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ALTBGP9_01303	COG1309	transcriptional regulator
ALTBGP9_01304	COG4774	siderophore transport
ALTBGP9_01308	COG3706	GGDEF domain
ALTBGP9_01310	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ALTBGP9_01310	COG3008	intermembrane lipid transfer
ALTBGP9_01311	COG2995	paraquat-inducible protein a
ALTBGP9_01313	COG0017	Asparaginyl-tRNA synthetase
ALTBGP9_01316	COG0189	ligase activity
ALTBGP9_01323	COG2226	methyltransferase
ALTBGP9_01326	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ALTBGP9_01327	COG4139	cobalamin transport
ALTBGP9_01328	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
ALTBGP9_01329	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
ALTBGP9_01330	COG2205	protein histidine kinase activity
ALTBGP9_01331	COG0745	RESPONSE REGULATOR receiver
ALTBGP9_01332	COG0569	domain protein
ALTBGP9_01333	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ALTBGP9_01336	COG5265	(ABC) transporter
ALTBGP9_01337	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ALTBGP9_01339	COG0745	RESPONSE REGULATOR receiver
ALTBGP9_01343	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ALTBGP9_01352	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ALTBGP9_01355	COG2755	lipolytic protein G-D-S-L family
ALTBGP9_01356	COG4181	ATPase activity
ALTBGP9_01357	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
ALTBGP9_01358	COG1090	epimerase
ALTBGP9_01359	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ALTBGP9_01360	COG0628	permease
ALTBGP9_01365	COG2350	Protein conserved in bacteria
ALTBGP9_01366	COG0159	tryptophan synthase activity
ALTBGP9_01368	COG0134	indole-3-glycerol-phosphate synthase activity
ALTBGP9_01368	COG0135	phosphoribosylanthranilate isomerase activity
ALTBGP9_01369	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
ALTBGP9_01371	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
ALTBGP9_01372	COG0613	PHP domain protein
ALTBGP9_01373	COG0009	L-threonylcarbamoyladenylate synthase
ALTBGP9_01375	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ALTBGP9_01377	COG0656	L-ascorbic acid biosynthetic process
ALTBGP9_01378	COG0110	maltose O-acetyltransferase activity
ALTBGP9_01381	COG2733	membrane
ALTBGP9_01382	COG0500	methyltransferase
ALTBGP9_01383	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ALTBGP9_01384	COG0497	DNA recombination
ALTBGP9_01385	COG0783	Belongs to the Dps family
ALTBGP9_01386	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
ALTBGP9_01388	COG1454	alcohol dehydrogenase
ALTBGP9_01389	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_01391	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ALTBGP9_01392	COG2610	gluconate transmembrane transporter activity
ALTBGP9_01393	COG4771	TonB-dependent receptor
ALTBGP9_01396	COG0784	Response regulator, receiver
ALTBGP9_01396	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALTBGP9_01396	COG2198	Histidine kinase
ALTBGP9_01396	COG2205	protein histidine kinase activity
ALTBGP9_01398	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
ALTBGP9_01400	COG0484	heat shock protein binding
ALTBGP9_01401	COG3909	cytochrome
ALTBGP9_01404	COG2200	EAL domain
ALTBGP9_01404	COG2199	diguanylate cyclase activity
ALTBGP9_01404	COG2202	Pas domain
ALTBGP9_01407	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
ALTBGP9_01409	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ALTBGP9_01410	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ALTBGP9_01415	COG0071	Belongs to the small heat shock protein (HSP20) family
ALTBGP9_01417	COG0280	phosphate acetyltransferase
ALTBGP9_01417	COG0857	belongs to the CobB CobQ family
ALTBGP9_01418	COG1228	amidohydrolase
ALTBGP9_01419	COG0815	Transfers the fatty acyl group on membrane lipoproteins
ALTBGP9_01420	COG4535	Mg2 and Co2 transporter CorC
ALTBGP9_01422	COG1702	phosphate starvation-inducible protein PhoH
ALTBGP9_01424	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ALTBGP9_01434	COG1607	acyl-coa hydrolase
ALTBGP9_01435	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ALTBGP9_01437	COG1115	amino acid carrier protein
ALTBGP9_01447	COG0012	GTP binding
ALTBGP9_01450	COG1064	alcohol dehydrogenase
ALTBGP9_01452	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ALTBGP9_01454	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
ALTBGP9_01456	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
ALTBGP9_01458	COG2890	protein-(glutamine-N5) methyltransferase activity
ALTBGP9_01459	COG3437	response regulator, receiver
ALTBGP9_01459	COG0784	Response regulator, receiver
ALTBGP9_01461	COG2877	3-deoxy-8-phosphooctulonate synthase activity
ALTBGP9_01463	COG0583	DNA-binding transcription factor activity
ALTBGP9_01465	COG2363	Small membrane protein
ALTBGP9_01470	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
ALTBGP9_01471	COG0515	serine threonine protein kinase
ALTBGP9_01472	COG2116	formate transmembrane transporter activity
ALTBGP9_01475	COG0714	Associated with various cellular activities
ALTBGP9_01476	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
ALTBGP9_01477	COG0033	Phosphoglucomutase
ALTBGP9_01478	COG0058	SHG alpha-glucan phosphorylase activity
ALTBGP9_01481	COG2988	succinylglutamate desuccinylase activity
ALTBGP9_01484	COG1301	dicarboxylic acid transport
ALTBGP9_01488	COG1393	Belongs to the ArsC family
ALTBGP9_01494	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
ALTBGP9_01498	COG5001	Diguanylate cyclase
ALTBGP9_01498	COG3300	MHYT domain
ALTBGP9_01504	COG2249	NAD(P)H dehydrogenase (quinone) activity
ALTBGP9_01509	COG1733	regulation of RNA biosynthetic process
ALTBGP9_01511	COG5002	protein histidine kinase activity
ALTBGP9_01511	COG5001	Diguanylate cyclase
ALTBGP9_01511	COG3447	MASE1 domain protein
ALTBGP9_01513	COG0402	S-adenosylhomocysteine deaminase activity
ALTBGP9_01514	COG2351	hydroxyisourate hydrolase activity
ALTBGP9_01517	COG1529	Aldehyde oxidase and xanthine dehydrogenase
ALTBGP9_01519	COG1309	transcriptional regulator
ALTBGP9_01522	COG2252	PERMEase
ALTBGP9_01523	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
ALTBGP9_01527	COG2205	protein histidine kinase activity
ALTBGP9_01527	COG0784	Response regulator, receiver
ALTBGP9_01530	COG2233	PERMEase
ALTBGP9_01531	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
ALTBGP9_01534	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ALTBGP9_01535	COG0730	response to heat
ALTBGP9_01537	COG0154	amidase activity
ALTBGP9_01543	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_01544	COG3001	Fructosamine kinase
ALTBGP9_01546	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
ALTBGP9_01550	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
ALTBGP9_01552	COG1596	polysaccharide export
ALTBGP9_01553	COG0489	protein tyrosine kinase activity
ALTBGP9_01554	COG4464	protein tyrosine phosphatase activity
ALTBGP9_01561	COG0438	transferase activity, transferring glycosyl groups
ALTBGP9_01563	COG1045	serine acetyltransferase
ALTBGP9_01566	COG1215	transferase activity, transferring glycosyl groups
ALTBGP9_01567	COG1216	Glycosyl transferase, family 2
ALTBGP9_01568	COG2244	polysaccharide biosynthetic process
ALTBGP9_01576	COG0072	phenylalanine-tRNA ligase activity
ALTBGP9_01576	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ALTBGP9_01581	COG1472	Belongs to the glycosyl hydrolase 3 family
ALTBGP9_01582	COG2096	Adenosyltransferase
ALTBGP9_01584	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ALTBGP9_01586	COG4591	ABC-type transport system involved in lipoprotein release permease component
ALTBGP9_01591	COG0708	Exodeoxyribonuclease III
ALTBGP9_01598	COG2814	Major facilitator Superfamily
ALTBGP9_01605	COG4770	biotin carboxylase activity
ALTBGP9_01606	COG1024	Enoyl-CoA hydratase
ALTBGP9_01607	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ALTBGP9_01608	COG1960	acyl-CoA dehydrogenase activity
ALTBGP9_01609	COG0789	Transcriptional regulator
ALTBGP9_01610	COG0183	Belongs to the thiolase family
ALTBGP9_01615	COG2925	Exonuclease
ALTBGP9_01616	COG0784	Response regulator, receiver
ALTBGP9_01616	COG5002	protein histidine kinase activity
ALTBGP9_01616	COG2205	protein histidine kinase activity
ALTBGP9_01624	COG1643	Atp-dependent helicase
ALTBGP9_01628	COG0604	alcohol dehydrogenase
ALTBGP9_01628	COG3321	synthase
ALTBGP9_01629	COG0328	RNA-DNA hybrid ribonuclease activity
ALTBGP9_01630	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ALTBGP9_01636	COG4943	cyclic-guanylate-specific phosphodiesterase activity
ALTBGP9_01637	COG1136	(ABC) transporter
ALTBGP9_01638	COG4591	ABC-type transport system involved in lipoprotein release permease component
ALTBGP9_01639	COG1301	dicarboxylic acid transport
ALTBGP9_01641	COG3724	N-succinylarginine dihydrolase activity
ALTBGP9_01642	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ALTBGP9_01643	COG3122	Protein conserved in bacteria
ALTBGP9_01645	COG0583	DNA-binding transcription factor activity
ALTBGP9_01646	COG0746	molybdenum cofactor guanylyltransferase activity
ALTBGP9_01647	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
ALTBGP9_01648	COG0243	molybdopterin cofactor binding
ALTBGP9_01650	COG0625	glutathione transferase activity
ALTBGP9_01653	COG2153	protein acetylation
ALTBGP9_01656	COG5002	protein histidine kinase activity
ALTBGP9_01658	COG1530	ribonuclease E activity
ALTBGP9_01659	COG0564	pseudouridine synthase activity
ALTBGP9_01660	COG0546	phosphoglycolate phosphatase activity
ALTBGP9_01661	COG0424	maF-like protein
ALTBGP9_01662	COG1399	metal-binding, possibly nucleic acid-binding protein
ALTBGP9_01664	COG0416	fatty acid biosynthetic process
ALTBGP9_01665	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ALTBGP9_01666	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
ALTBGP9_01668	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ALTBGP9_01669	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ALTBGP9_01670	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ALTBGP9_01671	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ALTBGP9_01674	COG0084	hydrolase, TatD family'
ALTBGP9_01675	COG0259	pyridoxamine-phosphate oxidase activity
ALTBGP9_01676	COG0702	epimerase
ALTBGP9_01677	COG3706	GGDEF domain
ALTBGP9_01682	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_01683	COG0596	Alpha beta hydrolase
ALTBGP9_01684	COG1024	Enoyl-CoA hydratase
ALTBGP9_01684	COG1250	3-hydroxyacyl-CoA dehydrogenase
ALTBGP9_01685	COG0183	Belongs to the thiolase family
ALTBGP9_01686	COG1960	acyl-CoA dehydrogenase activity
ALTBGP9_01687	COG0596	Alpha beta hydrolase
ALTBGP9_01690	COG2390	Transcriptional regulator
ALTBGP9_01691	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ALTBGP9_01693	COG0246	Mannitol dehydrogenase
ALTBGP9_01696	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
ALTBGP9_01697	COG0523	cobalamin synthesis protein
ALTBGP9_01698	COG0247	lactate metabolic process
ALTBGP9_01698	COG0277	FAD linked oxidase domain protein
ALTBGP9_01703	COG0668	transmembrane transport
ALTBGP9_01704	COG4771	TonB-dependent receptor
ALTBGP9_01709	COG0784	Response regulator, receiver
ALTBGP9_01709	COG2198	Histidine kinase
ALTBGP9_01709	COG2205	protein histidine kinase activity
ALTBGP9_01710	COG3437	response regulator, receiver
ALTBGP9_01712	COG0195	Participates in both transcription termination and antitermination
ALTBGP9_01715	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
ALTBGP9_01719	COG5001	Diguanylate cyclase
ALTBGP9_01719	COG3300	MHYT domain
ALTBGP9_01720	COG1187	pseudouridine synthase activity
ALTBGP9_01722	COG3153	acetyltransferase
ALTBGP9_01722	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ALTBGP9_01739	COG1032	radical SAM domain protein
ALTBGP9_01742	COG4771	TonB-dependent receptor
ALTBGP9_01743	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ALTBGP9_01745	COG4134	Bacterial extracellular solute-binding protein
ALTBGP9_01747	COG4136	ATPase activity
ALTBGP9_01748	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
ALTBGP9_01751	COG0604	alcohol dehydrogenase
ALTBGP9_01756	COG0583	DNA-binding transcription factor activity
ALTBGP9_01761	COG1131	(ABC) transporter
ALTBGP9_01765	COG0582	viral genome integration into host DNA
ALTBGP9_01769	COG3012	SEC-C Motif Domain Protein
ALTBGP9_01773	COG1902	pentaerythritol trinitrate reductase activity
ALTBGP9_01775	COG2867	negative regulation of translational initiation
ALTBGP9_01776	COG2914	Belongs to the UPF0125 (RnfH) family
ALTBGP9_01778	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ALTBGP9_01779	COG4771	TonB-dependent receptor
ALTBGP9_01780	COG0457	Tetratricopeptide repeat
ALTBGP9_01784	COG0574	Belongs to the PEP-utilizing enzyme family
ALTBGP9_01784	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ALTBGP9_01792	COG2850	peptidyl-arginine hydroxylation
ALTBGP9_01794	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ALTBGP9_01795	COG2915	High frequency lysogenization protein hflD homolog
ALTBGP9_01796	COG0482	sulfurtransferase activity
ALTBGP9_01797	COG1187	pseudouridine synthase activity
ALTBGP9_01800	COG1278	Cold shock
ALTBGP9_01801	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ALTBGP9_01802	COG0542	response to heat
ALTBGP9_01803	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ALTBGP9_01804	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
ALTBGP9_01805	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
ALTBGP9_01806	COG0492	ferredoxin-NADP+ reductase activity
ALTBGP9_01807	COG3092	negative regulation of chromosome organization
ALTBGP9_01808	COG0616	signal peptide processing
ALTBGP9_01810	COG0778	Nitroreductase
ALTBGP9_01812	COG0252	asparaginase activity
ALTBGP9_01813	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
ALTBGP9_01814	COG0321	lipoyl(octanoyl) transferase activity
ALTBGP9_01815	COG2921	Belongs to the UPF0250 family
ALTBGP9_01816	COG1686	Belongs to the peptidase S11 family
ALTBGP9_01817	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ALTBGP9_01818	COG0772	Belongs to the SEDS family
ALTBGP9_01819	COG0768	penicillin binding
ALTBGP9_01820	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
ALTBGP9_01821	COG0799	negative regulation of ribosome biogenesis
ALTBGP9_01822	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ALTBGP9_01823	COG1466	dna polymerase III delta subunit
ALTBGP9_01824	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
ALTBGP9_01825	COG0495	leucyl-tRNA aminoacylation
ALTBGP9_01827	COG1067	ATP-dependent peptidase activity
ALTBGP9_01831	COG1534	Rna-binding protein
ALTBGP9_01832	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
ALTBGP9_01833	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ALTBGP9_01834	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ALTBGP9_01835	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ALTBGP9_01836	COG0149	triose-phosphate isomerase activity
ALTBGP9_01837	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ALTBGP9_01843	COG1597	lipid kinase activity
ALTBGP9_01843	COG1803	Methylglyoxal synthase
ALTBGP9_01845	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_01846	COG0561	phosphatase activity
ALTBGP9_01849	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ALTBGP9_01850	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
ALTBGP9_01851	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
ALTBGP9_01854	COG1185	polyribonucleotide nucleotidyltransferase activity
ALTBGP9_01858	COG3547	Transposase (IS116 IS110 IS902 family)
ALTBGP9_01862	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
ALTBGP9_01871	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
ALTBGP9_01887	COG2223	nitrite transmembrane transporter activity
ALTBGP9_01896	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
ALTBGP9_01897	COG1196	nuclear chromosome segregation
ALTBGP9_01899	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
ALTBGP9_01903	COG1132	(ABC) transporter
ALTBGP9_01904	COG1663	tetraacyldisaccharide 4'-kinase activity
ALTBGP9_01911	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ALTBGP9_01912	COG0435	Glutathione S-transferase
ALTBGP9_01913	COG1741	Belongs to the pirin family
ALTBGP9_01918	COG0372	Belongs to the citrate synthase family
ALTBGP9_01920	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ALTBGP9_01921	COG1053	succinate dehydrogenase
ALTBGP9_01922	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ALTBGP9_01923	COG0567	Dehydrogenase, E1 component
ALTBGP9_01924	COG0508	dehydrogenase complex catalyzes the overall conversion of
ALTBGP9_01931	COG4667	esterase of the alpha-beta hydrolase superfamily
ALTBGP9_01935	COG0366	Alpha amylase catalytic
ALTBGP9_01938	COG1609	Transcriptional regulator
ALTBGP9_01940	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_01941	COG2267	carboxylic ester hydrolase activity
ALTBGP9_01943	COG0616	signal peptide processing
ALTBGP9_01946	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
ALTBGP9_01947	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ALTBGP9_01948	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ALTBGP9_01949	COG0386	Belongs to the glutathione peroxidase family
ALTBGP9_01950	COG2084	Dehydrogenase
ALTBGP9_01952	COG1960	acyl-CoA dehydrogenase activity
ALTBGP9_01953	COG1024	Enoyl-CoA hydratase
ALTBGP9_01954	COG2226	methyltransferase
ALTBGP9_01955	COG3083	sulfuric ester hydrolase activity
ALTBGP9_01956	COG3082	Protein of unknown function (DUF1414)
ALTBGP9_01957	COG3081	Nucleoid-associated protein
ALTBGP9_01959	COG0741	lytic transglycosylase activity
ALTBGP9_01959	COG0739	heme binding
ALTBGP9_01959	COG1196	nuclear chromosome segregation
ALTBGP9_01963	COG3275	phosphorelay sensor kinase activity
ALTBGP9_01964	COG3279	Response regulator of the LytR AlgR family
ALTBGP9_01965	COG0205	6-phosphofructokinase activity
ALTBGP9_01968	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALTBGP9_01968	COG2205	protein histidine kinase activity
ALTBGP9_01970	COG1054	Belongs to the UPF0176 family
ALTBGP9_01979	COG0513	Belongs to the DEAD box helicase family
ALTBGP9_01981	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ALTBGP9_01982	COG0583	DNA-binding transcription factor activity
ALTBGP9_01986	COG1760	l-serine dehydratase
ALTBGP9_01990	COG1322	Protein conserved in bacteria
ALTBGP9_01991	COG1404	Belongs to the peptidase S8 family
ALTBGP9_01992	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
ALTBGP9_01993	COG0022	dehydrogenase e1 component
ALTBGP9_01995	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ALTBGP9_01996	COG0515	serine threonine protein kinase
ALTBGP9_01997	COG1946	Acyl-CoA thioesterase
ALTBGP9_02000	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ALTBGP9_02002	COG1956	GAF domain-containing protein
ALTBGP9_02005	COG0793	Belongs to the peptidase S41A family
ALTBGP9_02006	COG0733	neurotransmitter:sodium symporter activity
ALTBGP9_02007	COG1757	Na H antiporter
ALTBGP9_02008	COG0308	aminopeptidase N
ALTBGP9_02015	COG0167	dihydroorotate dehydrogenase activity
ALTBGP9_02018	COG0488	(ABC) transporter
ALTBGP9_02020	COG3130	regulation of translation
ALTBGP9_02021	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ALTBGP9_02023	COG0415	Belongs to the DNA photolyase family
ALTBGP9_02024	COG0415	Belongs to the DNA photolyase family
ALTBGP9_02025	COG0415	Belongs to the DNA photolyase family
ALTBGP9_02026	COG3046	protein related to deoxyribodipyrimidine photolyase
ALTBGP9_02028	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ALTBGP9_02031	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ALTBGP9_02032	COG0589	response to stress
ALTBGP9_02034	COG0069	glutamate synthase activity
ALTBGP9_02037	COG2193	ferroxidase activity
ALTBGP9_02039	COG3278	Belongs to the heme-copper respiratory oxidase family
ALTBGP9_02042	COG2010	Cytochrome c
ALTBGP9_02047	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ALTBGP9_02048	COG0589	response to stress
ALTBGP9_02049	COG0037	tRNA processing
ALTBGP9_02050	COG1752	Esterase of the alpha-beta hydrolase superfamily
ALTBGP9_02054	COG1280	lysine exporter protein (LysE YggA)
ALTBGP9_02056	COG2897	thiosulfate sulfurtransferase activity
ALTBGP9_02057	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
ALTBGP9_02058	COG3148	PFAM DTW domain containing protein
ALTBGP9_02063	COG0322	excinuclease ABC activity
ALTBGP9_02064	COG2197	response regulator
ALTBGP9_02065	COG1741	Belongs to the pirin family
ALTBGP9_02066	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ALTBGP9_02067	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ALTBGP9_02071	COG3384	dioxygenase
ALTBGP9_02072	COG2259	Doxx family
ALTBGP9_02073	COG0583	DNA-binding transcription factor activity
ALTBGP9_02076	COG0670	Belongs to the BI1 family
ALTBGP9_02077	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
ALTBGP9_02080	COG2920	part of a sulfur-relay system
ALTBGP9_02084	COG4206	TonB-dependent receptor
ALTBGP9_02084	COG4206	TonB-dependent receptor
ALTBGP9_02087	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ALTBGP9_02088	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
ALTBGP9_02089	COG0531	amino acid
ALTBGP9_02089	COG1674	ftsk spoiiie
ALTBGP9_02092	COG0686	Belongs to the AlaDH PNT family
ALTBGP9_02093	COG0284	orotidine-5'-phosphate decarboxylase activity
ALTBGP9_02094	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
ALTBGP9_02098	COG0776	regulation of translation
ALTBGP9_02099	COG0539	negative regulation of cytoplasmic translation
ALTBGP9_02100	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
ALTBGP9_02101	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
ALTBGP9_02102	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
ALTBGP9_02104	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ALTBGP9_02105	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ALTBGP9_02106	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ALTBGP9_02107	COG0633	Ferredoxin
ALTBGP9_02108	COG4221	oxidoreductase activity
ALTBGP9_02116	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
ALTBGP9_02117	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ALTBGP9_02119	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ALTBGP9_02120	COG4974	Belongs to the 'phage' integrase family
ALTBGP9_02124	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ALTBGP9_02135	COG4783	chaperone-mediated protein folding
ALTBGP9_02136	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ALTBGP9_02137	COG1393	Belongs to the ArsC family
ALTBGP9_02144	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ALTBGP9_02146	COG1960	acyl-CoA dehydrogenase activity
ALTBGP9_02151	COG0572	uridine kinase
ALTBGP9_02152	COG3769	mannosylglycerate metabolic process
ALTBGP9_02153	COG1215	transferase activity, transferring glycosyl groups
ALTBGP9_02156	COG0303	'Molybdopterin
ALTBGP9_02157	COG0534	Mate efflux family protein
ALTBGP9_02161	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
ALTBGP9_02174	COG3011	Protein conserved in bacteria
ALTBGP9_02183	COG0405	Gamma-glutamyltransferase
ALTBGP9_02184	COG1024	Enoyl-CoA hydratase
ALTBGP9_02196	COG1671	Belongs to the UPF0178 family
ALTBGP9_02197	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_02198	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_02199	COG1960	acyl-CoA dehydrogenase activity
ALTBGP9_02200	COG0662	Cupin 2, conserved barrel domain protein
ALTBGP9_02200	COG2207	Transcriptional regulator
ALTBGP9_02203	COG1505	serine-type exopeptidase activity
ALTBGP9_02211	COG0596	Alpha beta hydrolase
ALTBGP9_02213	COG0716	FMN binding
ALTBGP9_02215	COG0735	belongs to the Fur family
ALTBGP9_02217	COG1984	allophanate hydrolase subunit 2
ALTBGP9_02218	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
ALTBGP9_02219	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
ALTBGP9_02220	COG2996	Protein conserved in bacteria
ALTBGP9_02221	COG1765	OsmC-like protein
ALTBGP9_02222	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ALTBGP9_02227	COG0436	Aminotransferase
ALTBGP9_02228	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
ALTBGP9_02229	COG0232	Belongs to the dGTPase family. Type 2 subfamily
ALTBGP9_02235	COG3012	SEC-C Motif Domain Protein
ALTBGP9_02236	COG0366	Alpha amylase catalytic
ALTBGP9_02237	COG0604	alcohol dehydrogenase
ALTBGP9_02239	COG1960	acyl-CoA dehydrogenase activity
ALTBGP9_02241	COG4771	TonB-dependent receptor
ALTBGP9_02246	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
ALTBGP9_02250	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
ALTBGP9_02251	COG0315	cyclic pyranopterin monophosphate synthase activity
ALTBGP9_02252	COG0521	Mo-molybdopterin cofactor biosynthetic process
ALTBGP9_02253	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ALTBGP9_02255	COG2423	ornithine cyclodeaminase activity
ALTBGP9_02256	COG0436	Aminotransferase
ALTBGP9_02257	COG1522	sequence-specific DNA binding
ALTBGP9_02260	COG0826	peptidase U32
ALTBGP9_02261	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ALTBGP9_02262	COG0436	Aminotransferase
ALTBGP9_02263	COG3268	Saccharopine dehydrogenase
ALTBGP9_02264	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ALTBGP9_02268	COG4771	TonB-dependent receptor
ALTBGP9_02277	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ALTBGP9_02279	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
ALTBGP9_02280	COG1074	ATP-dependent DNA helicase activity
ALTBGP9_02281	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
ALTBGP9_02284	COG1022	Amp-dependent synthetase and ligase
ALTBGP9_02289	COG0583	DNA-binding transcription factor activity
ALTBGP9_02293	COG0640	Transcriptional regulator
ALTBGP9_02297	COG2204	response regulator
ALTBGP9_02299	COG4251	negative regulation of phosphorylation
ALTBGP9_02300	COG0784	Response regulator, receiver
ALTBGP9_02301	COG0784	Response regulator, receiver
ALTBGP9_02301	COG2205	protein histidine kinase activity
ALTBGP9_02312	COG3139	Protein of unknown function (DUF1315)
ALTBGP9_02314	COG1115	amino acid carrier protein
ALTBGP9_02315	COG2866	Carboxypeptidase
ALTBGP9_02319	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
ALTBGP9_02321	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
ALTBGP9_02322	COG1640	4-alpha-glucanotransferase
ALTBGP9_02324	COG0676	glucose-6-phosphate 1-epimerase activity
ALTBGP9_02325	COG0800	Aldolase
ALTBGP9_02327	COG0129	dihydroxy-acid dehydratase activity
ALTBGP9_02329	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ALTBGP9_02330	COG1737	Transcriptional regulator
ALTBGP9_02331	COG0469	pyruvate kinase activity
ALTBGP9_02336	COG2823	Periplasmic or secreted lipoprotein
ALTBGP9_02342	COG3665	Urea carboxylase-associated protein
ALTBGP9_02346	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_02347	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ALTBGP9_02349	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
ALTBGP9_02352	COG2721	sulfolactate sulfo-lyase activity
ALTBGP9_02353	COG1904	glucuronate isomerase
ALTBGP9_02354	COG0246	Mannitol dehydrogenase
ALTBGP9_02355	COG0800	Aldolase
ALTBGP9_02356	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ALTBGP9_02357	COG2755	lipolytic protein G-D-S-L family
ALTBGP9_02360	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
ALTBGP9_02362	COG4677	pectinesterase activity
ALTBGP9_02366	COG2356	endonuclease I
ALTBGP9_02371	COG0583	DNA-binding transcription factor activity
ALTBGP9_02373	COG1979	alcohol dehydrogenase
ALTBGP9_02374	COG1902	pentaerythritol trinitrate reductase activity
ALTBGP9_02375	COG2203	Gaf domain
ALTBGP9_02375	COG4251	negative regulation of phosphorylation
ALTBGP9_02375	COG5001	Diguanylate cyclase
ALTBGP9_02375	COG3706	GGDEF domain
ALTBGP9_02377	COG0753	catalase activity
ALTBGP9_02378	COG3437	response regulator, receiver
ALTBGP9_02378	COG0784	Response regulator, receiver
ALTBGP9_02379	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALTBGP9_02379	COG4191	Histidine kinase
ALTBGP9_02390	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
ALTBGP9_02396	COG0471	metal ion transport
ALTBGP9_02398	COG0489	protein tyrosine kinase activity
ALTBGP9_02399	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ALTBGP9_02399	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ALTBGP9_02400	COG0668	transmembrane transport
ALTBGP9_02402	COG2226	methyltransferase
ALTBGP9_02403	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ALTBGP9_02404	COG0741	lytic transglycosylase activity
ALTBGP9_02404	COG1388	LysM domain
ALTBGP9_02408	COG3138	arginine N-succinyltransferase
ALTBGP9_02409	COG0215	cysteine-tRNA ligase activity
ALTBGP9_02410	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ALTBGP9_02411	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ALTBGP9_02413	COG2268	Band 7 protein
ALTBGP9_02414	COG0583	DNA-binding transcription factor activity
ALTBGP9_02415	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_02418	COG1733	regulation of RNA biosynthetic process
ALTBGP9_02419	COG0604	alcohol dehydrogenase
ALTBGP9_02420	COG0861	Integral membrane protein TerC family
ALTBGP9_02421	COG1063	alcohol dehydrogenase
ALTBGP9_02422	COG0583	DNA-binding transcription factor activity
ALTBGP9_02429	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
ALTBGP9_02430	COG1286	toxin biosynthetic process
ALTBGP9_02431	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
ALTBGP9_02432	COG0285	dihydrofolate synthase activity
ALTBGP9_02437	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ALTBGP9_02440	COG0596	Alpha beta hydrolase
ALTBGP9_02442	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ALTBGP9_02443	COG0318	PFAM AMP-dependent synthetase and ligase
ALTBGP9_02445	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ALTBGP9_02445	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
ALTBGP9_02453	COG0789	Transcriptional regulator
ALTBGP9_02455	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_02456	COG1119	ATPase activity
ALTBGP9_02458	COG0523	cobalamin synthesis protein
ALTBGP9_02459	COG1917	Cupin 2, conserved barrel domain protein
ALTBGP9_02459	COG4977	sequence-specific DNA binding
ALTBGP9_02460	COG1335	isochorismatase
ALTBGP9_02462	COG2031	fatty acid transporter
ALTBGP9_02463	COG2205	protein histidine kinase activity
ALTBGP9_02463	COG5002	protein histidine kinase activity
ALTBGP9_02463	COG0784	Response regulator, receiver
ALTBGP9_02464	COG0612	Peptidase, M16
ALTBGP9_02467	COG3101	peptidyl-lysine hydroxylation
ALTBGP9_02472	COG0446	pyridine nucleotide-disulphide oxidoreductase
ALTBGP9_02472	COG1902	pentaerythritol trinitrate reductase activity
ALTBGP9_02477	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ALTBGP9_02479	COG4399	Belongs to the UPF0754 family
ALTBGP9_02486	COG2186	Transcriptional regulator
ALTBGP9_02488	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
ALTBGP9_02489	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ALTBGP9_02490	COG2983	Belongs to the UPF0260 family
ALTBGP9_02491	COG0179	Fumarylacetoacetate (FAA) hydrolase
ALTBGP9_02494	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
ALTBGP9_02495	COG0318	PFAM AMP-dependent synthetase and ligase
ALTBGP9_02496	COG2267	carboxylic ester hydrolase activity
ALTBGP9_02499	COG1214	PFAM Peptidase M22, glycoprotease
ALTBGP9_02500	COG1199	ATP-dependent helicase activity
ALTBGP9_02518	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
ALTBGP9_02519	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
ALTBGP9_02520	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ALTBGP9_02521	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
ALTBGP9_02521	COG0131	Imidazoleglycerol-phosphate dehydratase
ALTBGP9_02522	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
ALTBGP9_02528	COG2116	formate transmembrane transporter activity
ALTBGP9_02529	COG0612	Peptidase, M16
ALTBGP9_02535	COG0326	Molecular chaperone. Has ATPase activity
ALTBGP9_02536	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
ALTBGP9_02541	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
ALTBGP9_02542	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
ALTBGP9_02545	COG3220	belongs to the UPF0276 family
ALTBGP9_02553	COG1183	phosphatidylcholine synthase activity
ALTBGP9_02557	COG0277	FAD linked oxidase domain protein
ALTBGP9_02558	COG1620	l-lactate permease
ALTBGP9_02562	COG0542	response to heat
ALTBGP9_02567	COG1595	DNA-templated transcription, initiation
ALTBGP9_02570	COG4221	oxidoreductase activity
ALTBGP9_02573	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ALTBGP9_02575	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
ALTBGP9_02577	COG0142	geranyltranstransferase activity
ALTBGP9_02581	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
ALTBGP9_02582	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ALTBGP9_02584	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
ALTBGP9_02587	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ALTBGP9_02587	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ALTBGP9_02590	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ALTBGP9_02591	COG0488	(ABC) transporter
ALTBGP9_02593	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
ALTBGP9_02595	COG0560	Phosphoserine phosphatase
ALTBGP9_02597	COG0084	hydrolase, TatD family'
ALTBGP9_02600	COG0571	ribonuclease III activity
ALTBGP9_02606	COG1595	DNA-templated transcription, initiation
ALTBGP9_02607	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
ALTBGP9_02610	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
ALTBGP9_02614	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ALTBGP9_02626	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
ALTBGP9_02627	COG1047	Peptidyl-prolyl cis-trans
ALTBGP9_02629	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
ALTBGP9_02630	COG0196	riboflavin kinase activity
ALTBGP9_02631	COG0728	peptidoglycan biosynthetic process
ALTBGP9_02632	COG0268	Binds directly to 16S ribosomal RNA
ALTBGP9_02635	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_02636	COG0385	Bile acid
ALTBGP9_02642	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ALTBGP9_02643	COG0776	regulation of translation
ALTBGP9_02644	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
ALTBGP9_02645	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
ALTBGP9_02646	COG0740	serine-type endopeptidase activity
ALTBGP9_02647	COG0544	peptidyl-prolyl cis-trans isomerase activity
ALTBGP9_02658	COG1720	tRNA m6t6A37 methyltransferase activity
ALTBGP9_02660	COG1234	tRNA 3'-trailer cleavage
ALTBGP9_02662	COG0123	including yeast histone deacetylase and acetoin utilization protein
ALTBGP9_02665	COG0516	GMP reductase activity
ALTBGP9_02665	COG0517	IMP dehydrogenase activity
ALTBGP9_02666	COG1570	exodeoxyribonuclease VII activity
ALTBGP9_02671	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ALTBGP9_02672	COG2976	Protein conserved in bacteria
ALTBGP9_02676	COG3063	Type IV pilus biogenesis stability protein PilW
ALTBGP9_02677	COG0820	rRNA (adenine-C2-)-methyltransferase activity
ALTBGP9_02679	COG2166	iron-sulfur cluster assembly
ALTBGP9_02682	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ALTBGP9_02683	COG0719	Fe-S assembly protein
ALTBGP9_02684	COG0396	ATPase activity
ALTBGP9_02685	COG0719	Fe-S assembly protein
ALTBGP9_02686	COG1104	cysteine desulfurase activity
ALTBGP9_02687	COG1959	2 iron, 2 sulfur cluster binding
ALTBGP9_02689	COG2072	flavoprotein involved in K transport
ALTBGP9_02690	COG1045	serine acetyltransferase
ALTBGP9_02691	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
ALTBGP9_02692	COG0483	inositol monophosphate 1-phosphatase activity
ALTBGP9_02694	COG3279	Response regulator of the LytR AlgR family
ALTBGP9_02695	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ALTBGP9_02696	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ALTBGP9_02697	COG1862	Preprotein translocase
ALTBGP9_02698	COG0343	queuine tRNA-ribosyltransferase activity
ALTBGP9_02702	COG1842	Phage shock protein A
ALTBGP9_02703	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ALTBGP9_02707	COG0754	glutathionylspermidine amidase activity
ALTBGP9_02713	COG2066	Belongs to the glutaminase family
ALTBGP9_02714	COG1785	Belongs to the alkaline phosphatase family
ALTBGP9_02715	COG0745	RESPONSE REGULATOR receiver
ALTBGP9_02734	COG0438	transferase activity, transferring glycosyl groups
ALTBGP9_02737	COG0367	asparagine synthase
ALTBGP9_02738	COG0438	transferase activity, transferring glycosyl groups
ALTBGP9_02744	COG2963	transposase activity
ALTBGP9_02746	COG2244	polysaccharide biosynthetic process
ALTBGP9_02756	COG0489	protein tyrosine kinase activity
ALTBGP9_02758	COG3409	Peptidoglycan-binding domain 1 protein
ALTBGP9_02758	COG3267	Type II secretory pathway component ExeA
ALTBGP9_02759	COG2827	Endonuclease containing a URI domain
ALTBGP9_02763	COG1560	Kdo2-lipid A biosynthetic process
ALTBGP9_02767	COG1960	acyl-CoA dehydrogenase activity
ALTBGP9_02771	COG1435	thymidine kinase activity
ALTBGP9_02774	COG1609	Transcriptional regulator
ALTBGP9_02775	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
ALTBGP9_02779	COG1082	Xylose isomerase domain protein TIM barrel
ALTBGP9_02780	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
ALTBGP9_02781	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ALTBGP9_02784	COG1982	Orn Lys Arg decarboxylase major
ALTBGP9_02790	COG1012	belongs to the aldehyde dehydrogenase family
ALTBGP9_02794	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
ALTBGP9_02795	COG0789	Transcriptional regulator
ALTBGP9_02801	COG1960	acyl-CoA dehydrogenase activity
ALTBGP9_02813	COG2080	2 iron, 2 sulfur cluster binding
ALTBGP9_02814	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
ALTBGP9_02815	COG1529	Aldehyde oxidase and xanthine dehydrogenase
ALTBGP9_02824	COG0601	transmembrane transport
ALTBGP9_02825	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ALTBGP9_02826	COG4172	Belongs to the ABC transporter superfamily
ALTBGP9_02827	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_02829	COG0693	protein deglycase activity
ALTBGP9_02830	COG1295	ribonuclease BN
ALTBGP9_02832	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
ALTBGP9_02834	COG3279	Response regulator of the LytR AlgR family
ALTBGP9_02842	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
ALTBGP9_02851	COG2814	Major facilitator Superfamily
ALTBGP9_02852	COG0339	signal peptide processing
ALTBGP9_02860	COG0514	ATP-dependent DNA helicase (RecQ)
ALTBGP9_02865	COG4251	negative regulation of phosphorylation
ALTBGP9_02866	COG2133	pyrroloquinoline quinone binding
ALTBGP9_02874	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
ALTBGP9_02874	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
ALTBGP9_02877	COG0738	Major facilitator superfamily
ALTBGP9_02878	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ALTBGP9_02880	COG2971	BadF BadG BcrA BcrD
ALTBGP9_02885	COG0583	DNA-binding transcription factor activity
ALTBGP9_02890	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ALTBGP9_02891	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ALTBGP9_02892	COG0006	proline dipeptidase activity
ALTBGP9_02895	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ALTBGP9_02897	COG2205	protein histidine kinase activity
ALTBGP9_02898	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ALTBGP9_02899	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
ALTBGP9_02900	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ALTBGP9_02908	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ALTBGP9_02909	COG0508	dehydrogenase complex catalyzes the overall conversion of
ALTBGP9_02910	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
ALTBGP9_02914	COG3577	Aspartyl protease
ALTBGP9_02915	COG0157	Belongs to the NadC ModD family
ALTBGP9_02916	COG4969	Belongs to the N-Me-Phe pilin family
ALTBGP9_02917	COG1459	type II secretion system
ALTBGP9_02918	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
ALTBGP9_02919	COG0237	dephospho-CoA kinase activity
ALTBGP9_02919	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
ALTBGP9_02920	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
ALTBGP9_02921	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
ALTBGP9_02922	COG3608	succinylglutamate desuccinylase aspartoacylase
ALTBGP9_02923	COG0840	transmembrane signaling receptor activity
ALTBGP9_02924	COG4566	intracellular signal transduction
ALTBGP9_02927	COG0643	Histidine kinase
ALTBGP9_02927	COG2198	Histidine kinase
ALTBGP9_02929	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ALTBGP9_02931	COG2201	protein-glutamate methylesterase activity
ALTBGP9_02932	COG0835	chemotaxis
ALTBGP9_02933	COG0840	transmembrane signaling receptor activity
ALTBGP9_02934	COG0494	nUDIX hydrolase
ALTBGP9_02936	COG0739	heme binding
ALTBGP9_02937	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
ALTBGP9_02938	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
ALTBGP9_02939	COG0849	cell division
ALTBGP9_02940	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ALTBGP9_02941	COG1181	Belongs to the D-alanine--D-alanine ligase family
ALTBGP9_02944	COG0772	Belongs to the SEDS family
ALTBGP9_02945	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
ALTBGP9_02947	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ALTBGP9_02948	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
ALTBGP9_02949	COG0768	penicillin binding
ALTBGP9_02950	COG3116	cell division
ALTBGP9_02952	COG2001	Belongs to the MraZ family
ALTBGP9_02956	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ALTBGP9_02957	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ALTBGP9_02961	COG0678	peroxiredoxin activity
ALTBGP9_02961	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
ALTBGP9_02966	COG2204	response regulator
ALTBGP9_02971	COG0668	transmembrane transport
ALTBGP9_02972	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ALTBGP9_02973	COG0189	ligase activity
ALTBGP9_02974	COG1678	Uncharacterized ACR, COG1678
ALTBGP9_02975	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
ALTBGP9_02980	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
ALTBGP9_02981	COG0762	integral membrane protein
ALTBGP9_02983	COG1902	pentaerythritol trinitrate reductase activity
ALTBGP9_02983	COG0446	pyridine nucleotide-disulphide oxidoreductase
ALTBGP9_02990	COG1764	response to oxidative stress
ALTBGP9_02991	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ALTBGP9_02993	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
ALTBGP9_02994	COG1396	sequence-specific DNA binding
ALTBGP9_02995	COG2814	Major facilitator Superfamily
ALTBGP9_02996	COG0724	RNA recognition motif
ALTBGP9_03001	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
ALTBGP9_03002	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ALTBGP9_03003	COG0083	homoserine kinase activity
ALTBGP9_03006	COG0583	DNA-binding transcription factor activity
ALTBGP9_03009	COG2197	response regulator
ALTBGP9_03010	COG4585	Histidine kinase
ALTBGP9_03013	COG0640	Transcriptional regulator
ALTBGP9_03015	COG0431	NADPH-dependent FMN reductase
ALTBGP9_03016	COG0798	PFAM Bile acid sodium symporter
ALTBGP9_03017	COG2201	protein-glutamate methylesterase activity
ALTBGP9_03018	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
ALTBGP9_03020	COG0642	Histidine kinase
ALTBGP9_03024	COG2515	1-aminocyclopropane-1-carboxylate deaminase
ALTBGP9_03026	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
ALTBGP9_03031	COG1748	Saccharopine dehydrogenase
ALTBGP9_03035	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
ALTBGP9_03036	COG3107	peptidoglycan biosynthetic process
ALTBGP9_03037	COG0792	nuclease activity
ALTBGP9_03040	COG2823	Periplasmic or secreted lipoprotein
ALTBGP9_03044	COG4585	Histidine kinase
ALTBGP9_03045	COG2197	response regulator
ALTBGP9_03048	COG4771	TonB-dependent receptor
ALTBGP9_03051	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
ALTBGP9_03052	COG0372	Belongs to the citrate synthase family
ALTBGP9_03053	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
ALTBGP9_03054	COG2828	Protein conserved in bacteria
ALTBGP9_03055	COG2199	diguanylate cyclase activity
ALTBGP9_03055	COG2203	Gaf domain
ALTBGP9_03059	COG2198	Histidine kinase
ALTBGP9_03059	COG5002	protein histidine kinase activity
ALTBGP9_03059	COG0784	Response regulator, receiver
ALTBGP9_03061	COG0069	glutamate synthase activity
ALTBGP9_03061	COG0070	glutamate synthase
ALTBGP9_03061	COG0067	glutamate synthase
ALTBGP9_03062	COG0493	'glutamate synthase
ALTBGP9_03066	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
ALTBGP9_03067	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
ALTBGP9_03068	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
ALTBGP9_03069	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ALTBGP9_03072	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ALTBGP9_03073	COG5507	3-demethylubiquinone-9 3-methyltransferase
ALTBGP9_03077	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
ALTBGP9_03078	COG0739	heme binding
ALTBGP9_03078	COG1196	nuclear chromosome segregation
ALTBGP9_03078	COG0741	lytic transglycosylase activity
ALTBGP9_03079	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
ALTBGP9_03081	COG0738	Major facilitator superfamily
ALTBGP9_03083	COG1902	pentaerythritol trinitrate reductase activity
ALTBGP9_03086	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ALTBGP9_03087	COG0625	glutathione transferase activity
ALTBGP9_03091	COG2894	cell division
ALTBGP9_03092	COG0850	regulation of cytokinetic process
ALTBGP9_03099	COG1981	membrane
ALTBGP9_03102	COG1914	H( )-stimulated, divalent metal cation uptake system
ALTBGP9_03103	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
ALTBGP9_03104	COG0745	RESPONSE REGULATOR receiver
ALTBGP9_03105	COG1217	gtp-binding protein TYPA
ALTBGP9_03107	COG0174	glutamine synthetase
ALTBGP9_03109	COG3852	Histidine kinase
ALTBGP9_03110	COG2204	response regulator
ALTBGP9_03111	COG3437	response regulator, receiver
ALTBGP9_03120	COG0525	valine-tRNA ligase activity
ALTBGP9_03121	COG2927	DNA polymerase III (CHI subunit)
ALTBGP9_03122	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ALTBGP9_03123	COG0795	lipopolysaccharide-transporting ATPase activity
ALTBGP9_03124	COG0795	lipopolysaccharide-transporting ATPase activity
ALTBGP9_03140	COG1733	regulation of RNA biosynthetic process
ALTBGP9_03143	COG0625	glutathione transferase activity
ALTBGP9_03145	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ALTBGP9_03146	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ALTBGP9_03147	COG1017	nitric oxide dioxygenase activity
ALTBGP9_03147	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ALTBGP9_03148	COG3604	Transcriptional regulator
ALTBGP9_03152	COG0673	inositol 2-dehydrogenase activity
ALTBGP9_03154	COG0628	permease
ALTBGP9_03160	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ALTBGP9_03162	COG0642	Histidine kinase
ALTBGP9_03171	COG1971	Probably functions as a manganese efflux pump
ALTBGP9_03176	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
ALTBGP9_03177	COG3706	GGDEF domain
ALTBGP9_03178	COG0679	Auxin Efflux Carrier
ALTBGP9_03179	COG2267	carboxylic ester hydrolase activity
ALTBGP9_03185	COG1131	(ABC) transporter
ALTBGP9_03187	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ALTBGP9_03197	COG2205	protein histidine kinase activity
ALTBGP9_03199	COG0348	domain, Protein
ALTBGP9_03199	COG3901	Regulator of nitric oxide reductase transcription
ALTBGP9_03201	COG2197	response regulator
ALTBGP9_03209	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ALTBGP9_03210	COG0583	DNA-binding transcription factor activity
ALTBGP9_03211	COG1304	FMN binding
ALTBGP9_03212	COG0277	FAD linked oxidase domain protein
ALTBGP9_03214	COG1462	curli production assembly transport component CsgG
ALTBGP9_03220	COG2197	response regulator
ALTBGP9_03223	COG0513	Belongs to the DEAD box helicase family
ALTBGP9_03224	COG3264	Mechanosensitive ion channel
ALTBGP9_03224	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
ALTBGP9_03228	COG2202	Pas domain
ALTBGP9_03228	COG2200	EAL domain
ALTBGP9_03228	COG2199	diguanylate cyclase activity
ALTBGP9_03233	COG0730	response to heat
ALTBGP9_03234	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ALTBGP9_03237	COG4191	Histidine kinase
ALTBGP9_03239	COG0417	DNA replication proofreading
ALTBGP9_03241	COG0318	PFAM AMP-dependent synthetase and ligase
ALTBGP9_03252	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ALTBGP9_03254	COG1573	uracil-dna glycosylase
ALTBGP9_03255	COG5001	Diguanylate cyclase
ALTBGP9_03255	COG3300	MHYT domain
ALTBGP9_03259	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ALTBGP9_03263	COG1983	PspC domain protein
ALTBGP9_03264	COG1842	Phage shock protein A
ALTBGP9_03266	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ALTBGP9_03269	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
ALTBGP9_03271	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
ALTBGP9_03272	COG0204	Acyl-transferase
ALTBGP9_03273	COG0204	Acyl-transferase
ALTBGP9_03274	COG0668	transmembrane transport
ALTBGP9_03277	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ALTBGP9_03278	COG0733	neurotransmitter:sodium symporter activity
ALTBGP9_03281	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ALTBGP9_03284	COG0716	FMN binding
ALTBGP9_03286	COG0848	biopolymer transport protein
ALTBGP9_03288	COG0457	Tetratricopeptide repeat
ALTBGP9_03289	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
ALTBGP9_03294	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
ALTBGP9_03295	COG0702	epimerase
ALTBGP9_03298	COG5002	protein histidine kinase activity
ALTBGP9_03298	COG5001	Diguanylate cyclase
ALTBGP9_03300	COG1574	metal-dependent hydrolase with the TIM-barrel fold
ALTBGP9_03302	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ALTBGP9_03304	COG0583	DNA-binding transcription factor activity
ALTBGP9_03305	COG0121	glutamine amidotransferase
ALTBGP9_03308	COG4682	membrane
ALTBGP9_03312	COG1953	Uracil, thiamine, allantoin
ALTBGP9_03313	COG4771	TonB-dependent receptor
ALTBGP9_03315	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ALTBGP9_03316	COG0778	Nitroreductase
ALTBGP9_03317	COG0596	Alpha beta hydrolase
ALTBGP9_03318	COG0251	oxidation-reduction process
ALTBGP9_03319	COG1335	isochorismatase
ALTBGP9_03320	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ALTBGP9_03321	COG1309	transcriptional regulator
ALTBGP9_03324	COG4628	conserved protein (DUF2132)
ALTBGP9_03325	COG2610	gluconate transmembrane transporter activity
ALTBGP9_03326	COG3265	gluconokinase activity
ALTBGP9_03327	COG1609	Transcriptional regulator
ALTBGP9_03328	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ALTBGP9_03330	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ALTBGP9_03334	COG1477	protein flavinylation
ALTBGP9_03335	COG2871	sodium ion transport
ALTBGP9_03336	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
ALTBGP9_03337	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
ALTBGP9_03338	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
ALTBGP9_03339	COG1805	sodium ion transport
ALTBGP9_03340	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
ALTBGP9_03341	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
ALTBGP9_03342	COG0545	Peptidyl-prolyl cis-trans isomerase
ALTBGP9_03343	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
ALTBGP9_03344	COG0039	L-malate dehydrogenase activity
ALTBGP9_03345	COG1438	arginine binding
ALTBGP9_03350	COG0572	uridine kinase
ALTBGP9_03351	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ALTBGP9_03354	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
ALTBGP9_03359	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ALTBGP9_03363	COG0189	ligase activity
ALTBGP9_03365	COG0189	ligase activity
ALTBGP9_03365	COG4067	protein conserved in archaea
ALTBGP9_03368	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ALTBGP9_03370	COG1283	sodium-dependent phosphate transmembrane transporter activity
ALTBGP9_03371	COG0667	Aldo Keto reductase
ALTBGP9_03382	COG0753	catalase activity
ALTBGP9_03390	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
ALTBGP9_03392	COG0812	UDP-N-acetylmuramate dehydrogenase activity
ALTBGP9_03393	COG0840	transmembrane signaling receptor activity
ALTBGP9_03402	COG0583	DNA-binding transcription factor activity
ALTBGP9_03409	COG1216	Glycosyl transferase, family 2
ALTBGP9_03409	COG0438	transferase activity, transferring glycosyl groups
ALTBGP9_03413	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
ALTBGP9_03422	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_03424	COG1083	cytidylyl-transferase
ALTBGP9_03432	COG0297	glycogen (starch) synthase activity
ALTBGP9_03432	COG0438	transferase activity, transferring glycosyl groups
ALTBGP9_03434	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
ALTBGP9_03435	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ALTBGP9_03440	COG0202	RNA polymerase activity
ALTBGP9_03446	COG0201	protein transport
ALTBGP9_03450	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
ALTBGP9_03457	COG5002	protein histidine kinase activity
ALTBGP9_03457	COG0784	Response regulator, receiver
ALTBGP9_03460	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ALTBGP9_03461	COG0557	exoribonuclease II activity
ALTBGP9_03465	COG4771	TonB-dependent receptor
ALTBGP9_03468	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
ALTBGP9_03472	COG2234	aminopeptidase activity
ALTBGP9_03474	COG4251	negative regulation of phosphorylation
ALTBGP9_03476	COG1271	oxidase subunit
ALTBGP9_03477	COG1294	oxidase, subunit
ALTBGP9_03480	COG1522	sequence-specific DNA binding
ALTBGP9_03483	COG1278	Cold shock
ALTBGP9_03484	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ALTBGP9_03486	COG2226	methyltransferase
ALTBGP9_03488	COG0339	signal peptide processing
ALTBGP9_03489	COG2201	protein-glutamate methylesterase activity
ALTBGP9_03493	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ALTBGP9_03494	COG0243	molybdopterin cofactor binding
ALTBGP9_03497	COG4946	Tricorn protease homolog
ALTBGP9_03497	COG1506	peptidase
ALTBGP9_03497	COG0823	Involved in the tonB-independent uptake of proteins
ALTBGP9_03507	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ALTBGP9_03509	COG2197	response regulator
ALTBGP9_03515	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
ALTBGP9_03516	COG1278	Cold shock
ALTBGP9_03518	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ALTBGP9_03519	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ALTBGP9_03522	COG0281	malic enzyme
ALTBGP9_03524	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ALTBGP9_03530	COG0456	acetyltransferase
ALTBGP9_03532	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
ALTBGP9_03533	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
ALTBGP9_03534	COG2177	Part of the ABC transporter FtsEX involved in
ALTBGP9_03535	COG2884	Cell division ATP-binding protein ftsE
ALTBGP9_03536	COG0552	protein localization to endoplasmic reticulum
ALTBGP9_03537	COG0742	ribosomal rna small subunit methyltransferase
ALTBGP9_03539	COG2095	MarC family integral membrane protein
ALTBGP9_03543	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ALTBGP9_03544	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ALTBGP9_03545	COG0617	tRNA 3'-terminal CCA addition
ALTBGP9_03546	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ALTBGP9_03549	COG0076	glutamate decarboxylase activity
ALTBGP9_03552	COG0842	Transport permease protein
ALTBGP9_03553	COG1131	(ABC) transporter
ALTBGP9_03554	COG0745	RESPONSE REGULATOR receiver
ALTBGP9_03555	COG2205	protein histidine kinase activity
ALTBGP9_03559	COG1253	flavin adenine dinucleotide binding
ALTBGP9_03560	COG0701	Predicted permease
ALTBGP9_03561	COG1966	Carbon starvation protein
ALTBGP9_03571	COG0848	biopolymer transport protein
ALTBGP9_03573	COG0811	peptide transport
ALTBGP9_03577	COG3128	pkhd-type hydroxylase
ALTBGP9_03582	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
ALTBGP9_03583	COG0049	tRNA binding
ALTBGP9_03584	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
ALTBGP9_03585	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
ALTBGP9_03586	COG0085	RNA polymerase activity
ALTBGP9_03587	COG0222	ribosome binding
ALTBGP9_03588	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
ALTBGP9_03589	COG0081	regulation of translation
ALTBGP9_03590	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
ALTBGP9_03593	COG0250	Participates in transcription elongation, termination and antitermination
ALTBGP9_03594	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ALTBGP9_03596	COG1132	(ABC) transporter
ALTBGP9_03597	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ALTBGP9_03598	COG3590	peptidase
ALTBGP9_03601	COG0513	Belongs to the DEAD box helicase family
ALTBGP9_03603	COG0418	dihydroorotase activity
ALTBGP9_03604	COG3040	lipid binding
ALTBGP9_03605	COG4989	oxidoreductase activity
ALTBGP9_03606	COG0346	lactoylglutathione lyase activity
ALTBGP9_03607	COG0668	transmembrane transport
ALTBGP9_03611	COG0302	gtp cyclohydrolase
ALTBGP9_03613	COG2957	Belongs to the agmatine deiminase family
ALTBGP9_03616	COG1201	RNA secondary structure unwinding
ALTBGP9_03617	COG2311	Membrane
ALTBGP9_03620	COG1793	dna ligase
ALTBGP9_03621	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
ALTBGP9_03622	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ALTBGP9_03627	COG0625	glutathione transferase activity
ALTBGP9_03628	COG0625	glutathione transferase activity
ALTBGP9_03630	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
ALTBGP9_03633	COG1012	belongs to the aldehyde dehydrogenase family
ALTBGP9_03634	COG0028	Belongs to the TPP enzyme family
ALTBGP9_03636	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
ALTBGP9_03637	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
ALTBGP9_03638	COG0330	HflC and HflK could
ALTBGP9_03639	COG0330	HflC and HflK could
ALTBGP9_03640	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ALTBGP9_03641	COG1923	regulation of RNA biosynthetic process
ALTBGP9_03642	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ALTBGP9_03645	COG0802	atpase or kinase
ALTBGP9_03646	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ALTBGP9_03646	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ALTBGP9_03647	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ALTBGP9_03651	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
ALTBGP9_03652	COG0735	belongs to the Fur family
ALTBGP9_03656	COG0305	Participates in initiation and elongation during chromosome replication
ALTBGP9_03661	COG2258	MOSC domain
ALTBGP9_03675	COG0840	transmembrane signaling receptor activity
ALTBGP9_03676	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALTBGP9_03676	COG4191	Histidine kinase
ALTBGP9_03677	COG0840	transmembrane signaling receptor activity
ALTBGP9_03680	COG2855	membrane
ALTBGP9_03681	COG2175	clavaminate synthase activity
ALTBGP9_03682	COG0656	L-ascorbic acid biosynthetic process
ALTBGP9_03686	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ALTBGP9_03687	COG4771	TonB-dependent receptor
ALTBGP9_03691	COG3706	GGDEF domain
ALTBGP9_03692	COG1757	Na H antiporter
ALTBGP9_03693	COG1472	Belongs to the glycosyl hydrolase 3 family
ALTBGP9_03695	COG2723	6-phospho-beta-galactosidase activity
ALTBGP9_03696	COG1609	Transcriptional regulator
ALTBGP9_03697	COG0477	Major facilitator Superfamily
ALTBGP9_03697	COG2814	Major facilitator Superfamily
ALTBGP9_03698	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
ALTBGP9_03699	COG4988	ABC transporter
ALTBGP9_03700	COG4890	Cyd operon protein YbgT
ALTBGP9_03701	COG1294	oxidase, subunit
ALTBGP9_03709	COG4319	ketosteroid isomerase
ALTBGP9_03710	COG1335	isochorismatase
ALTBGP9_03711	COG2863	cytochrome
ALTBGP9_03713	COG1741	Belongs to the pirin family
ALTBGP9_03717	COG4771	TonB-dependent receptor
ALTBGP9_03720	COG1469	GTP cyclohydrolase I activity
ALTBGP9_03731	COG3237	CsbD-like
ALTBGP9_03734	COG1595	DNA-templated transcription, initiation
ALTBGP9_03740	COG0508	dehydrogenase complex catalyzes the overall conversion of
ALTBGP9_03740	COG0596	Alpha beta hydrolase
ALTBGP9_03745	COG3038	cytochrome b561
ALTBGP9_03747	COG1252	NADH dehydrogenase
ALTBGP9_03748	COG4206	TonB-dependent receptor
ALTBGP9_03751	COG0583	DNA-binding transcription factor activity
ALTBGP9_03752	COG2067	long-chain fatty acid transport protein
ALTBGP9_03753	COG2130	NADP-dependent
ALTBGP9_03754	COG3706	GGDEF domain
ALTBGP9_03754	COG2203	Gaf domain
ALTBGP9_03754	COG5001	Diguanylate cyclase
ALTBGP9_03754	COG4251	negative regulation of phosphorylation
ALTBGP9_03755	COG2205	protein histidine kinase activity
ALTBGP9_03755	COG0784	Response regulator, receiver
ALTBGP9_03757	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ALTBGP9_03758	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ALTBGP9_03759	COG1349	DNA-binding transcription factor activity
ALTBGP9_03760	COG0673	inositol 2-dehydrogenase activity
ALTBGP9_03763	COG0697	spore germination
ALTBGP9_03764	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ALTBGP9_03765	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
ALTBGP9_03766	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
ALTBGP9_03767	COG1166	arginine decarboxylase activity
ALTBGP9_03769	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
ALTBGP9_03785	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ALTBGP9_03787	COG0109	protoheme IX farnesyltransferase activity
ALTBGP9_03791	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ALTBGP9_03800	COG1324	tolerance protein
ALTBGP9_03801	COG4232	protein-disulfide reductase activity
ALTBGP9_03802	COG0739	heme binding
ALTBGP9_03803	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
ALTBGP9_03804	COG0511	ligase activity, forming carbon-carbon bonds
ALTBGP9_03805	COG0439	Biotin carboxylase
ALTBGP9_03813	COG0154	amidase activity
ALTBGP9_03816	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ALTBGP9_03817	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ALTBGP9_03820	COG0151	Belongs to the GarS family
ALTBGP9_03823	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ALTBGP9_03824	COG3954	Phosphoribulokinase
ALTBGP9_03829	COG1501	Belongs to the glycosyl hydrolase 31 family
ALTBGP9_03830	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
ALTBGP9_03831	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ALTBGP9_03833	COG3031	protein transport across the cell outer membrane
ALTBGP9_03835	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ALTBGP9_03836	COG1459	type II secretion system
ALTBGP9_03837	COG2165	general secretion pathway protein
ALTBGP9_03838	COG2165	general secretion pathway protein
ALTBGP9_03839	COG2165	general secretion pathway protein
ALTBGP9_03840	COG4795	General secretion pathway protein
ALTBGP9_03843	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
ALTBGP9_03847	COG1012	belongs to the aldehyde dehydrogenase family
ALTBGP9_03849	COG1011	Hydrolase
ALTBGP9_03850	COG0494	nUDIX hydrolase
ALTBGP9_03851	COG1218	3'(2'),5'-bisphosphate nucleotidase
ALTBGP9_03853	COG2943	transferase activity, transferring hexosyl groups
ALTBGP9_03854	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
ALTBGP9_03856	COG3089	Belongs to the UPF0270 family
ALTBGP9_03857	COG0429	hydrolase of the alpha beta-hydrolase fold
ALTBGP9_03859	COG0488	(ABC) transporter
ALTBGP9_03865	COG0545	Peptidyl-prolyl cis-trans isomerase
ALTBGP9_03867	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ALTBGP9_03868	COG2183	response to ionizing radiation
ALTBGP9_03873	COG2207	Transcriptional regulator
ALTBGP9_03873	COG1609	Transcriptional regulator
ALTBGP9_03874	COG2211	Major facilitator Superfamily
ALTBGP9_03879	COG3693	PFAM glycoside hydrolase, family 10
ALTBGP9_03880	COG0667	Aldo Keto reductase
ALTBGP9_03881	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ALTBGP9_03882	COG2115	Belongs to the xylose isomerase family
ALTBGP9_03883	COG1070	Carbohydrate kinase
ALTBGP9_03886	COG1472	Belongs to the glycosyl hydrolase 3 family
ALTBGP9_03887	COG0477	Major facilitator Superfamily
ALTBGP9_03895	COG0596	Alpha beta hydrolase
ALTBGP9_03896	COG1040	competence protein
ALTBGP9_03899	COG1794	racemase activity, acting on amino acids and derivatives
ALTBGP9_03902	COG0534	Mate efflux family protein
ALTBGP9_03905	COG1999	signal sequence binding
ALTBGP9_03906	COG0109	protoheme IX farnesyltransferase activity
ALTBGP9_03907	COG1612	heme a metabolic process
ALTBGP9_03912	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
ALTBGP9_03913	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ALTBGP9_03914	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ALTBGP9_03917	COG3706	GGDEF domain
ALTBGP9_03920	COG0129	dihydroxy-acid dehydratase activity
ALTBGP9_03921	COG2860	membrane
ALTBGP9_03922	COG0606	chelatase, subunit chli
ALTBGP9_03923	COG0583	DNA-binding transcription factor activity
ALTBGP9_03925	COG2814	Major facilitator Superfamily
ALTBGP9_03927	COG0729	surface antigen
ALTBGP9_03928	COG2911	Protein conserved in bacteria
ALTBGP9_03933	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ALTBGP9_03935	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
ALTBGP9_03939	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ALTBGP9_03944	COG1228	amidohydrolase
ALTBGP9_03948	COG0425	Belongs to the sulfur carrier protein TusA family
ALTBGP9_03951	COG1561	YicC-like family, N-terminal region
ALTBGP9_03956	COG2211	Major facilitator Superfamily
ALTBGP9_03957	COG1609	Transcriptional regulator
ALTBGP9_03961	COG2199	diguanylate cyclase activity
ALTBGP9_03961	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
ALTBGP9_03966	COG0355	proton-transporting ATP synthase activity, rotational mechanism
ALTBGP9_03970	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
ALTBGP9_03971	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
ALTBGP9_03975	COG1475	DNA binding
ALTBGP9_03976	COG1192	Involved in chromosome partitioning
ALTBGP9_03981	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ALTBGP9_03982	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
ALTBGP9_03984	COG0706	membrane insertase activity
ALTBGP9_03985	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
ALTBGP9_03986	COG0594	ribonuclease P activity
ALTBGP9_03987	COG0230	Belongs to the bacterial ribosomal protein bL34 family
ALTBGP9_03988	COG1192	Involved in chromosome partitioning
ALTBGP9_03998	COG1396	sequence-specific DNA binding
ALTBGP9_03999	COG2974	May be involved in recombination
ALTBGP9_04000	COG4191	Histidine kinase
ALTBGP9_04000	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALTBGP9_04001	COG0745	RESPONSE REGULATOR receiver
ALTBGP9_04002	COG5002	protein histidine kinase activity
ALTBGP9_04008	COG0811	peptide transport
ALTBGP9_04009	COG0811	peptide transport
ALTBGP9_04010	COG0848	biopolymer transport protein
ALTBGP9_04011	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
ALTBGP9_04013	COG3437	response regulator, receiver
ALTBGP9_04017	COG2133	pyrroloquinoline quinone binding
ALTBGP9_04018	COG1049	propionate catabolic process, 2-methylcitrate cycle
ALTBGP9_04025	COG0527	aspartate kinase activity
ALTBGP9_04027	COG0840	transmembrane signaling receptor activity
ALTBGP9_04028	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
ALTBGP9_04029	COG2967	ApaG domain
ALTBGP9_04031	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ALTBGP9_04032	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ALTBGP9_04033	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
ALTBGP9_04034	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
ALTBGP9_04036	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ALTBGP9_04040	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
ALTBGP9_04043	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ALTBGP9_04044	COG3956	TIGRFAM MazG family protein
ALTBGP9_04050	COG1028	Short-chain dehydrogenase reductase Sdr
ALTBGP9_04052	COG0318	PFAM AMP-dependent synthetase and ligase
ALTBGP9_04054	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
ALTBGP9_04060	COG0642	Histidine kinase
ALTBGP9_04064	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
ALTBGP9_04065	COG0723	plastoquinol--plastocyanin reductase activity
ALTBGP9_04066	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
ALTBGP9_04067	COG2857	Cytochrome c1
ALTBGP9_04071	COG5002	protein histidine kinase activity
ALTBGP9_04072	COG0745	RESPONSE REGULATOR receiver
ALTBGP9_04077	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ALTBGP9_04094	COG1017	nitric oxide dioxygenase activity
ALTBGP9_04094	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ALTBGP9_04098	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
ALTBGP9_04104	COG0375	protein maturation
ALTBGP9_04106	COG0409	Hydrogenase expression formation protein
ALTBGP9_04108	COG0309	Hydrogenase expression formation protein (HypE)
ALTBGP9_04109	COG0789	Transcriptional regulator
ALTBGP9_04110	COG2217	Heavy metal translocating P-type atpase
ALTBGP9_04128	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ALTBGP9_04130	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
ALTBGP9_04132	COG0463	Glycosyl transferase, family 2
ALTBGP9_04133	COG0745	RESPONSE REGULATOR receiver
ALTBGP9_04134	COG5002	protein histidine kinase activity
ALTBGP9_04141	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
ALTBGP9_04143	COG0789	Transcriptional regulator
ALTBGP9_04144	COG2217	Heavy metal translocating P-type atpase
ALTBGP9_04151	COG0531	amino acid
ALTBGP9_04158	COG3209	COG3209 Rhs family protein
ALTBGP9_04160	COG0789	Transcriptional regulator
ALTBGP9_04187	COG1917	Cupin 2, conserved barrel domain protein
ALTBGP9_04187	COG2207	Transcriptional regulator
ALTBGP9_04188	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
ALTBGP9_04189	COG1280	lysine exporter protein (LysE YggA)
ALTBGP9_04190	COG1522	sequence-specific DNA binding
ALTBGP9_04199	COG1396	sequence-specific DNA binding
ALTBGP9_04200	COG3550	peptidyl-serine autophosphorylation