AVL55_00005 PF00308 Bacterial dnaA protein AVL55_00005 PF08299 Bacterial dnaA protein helix-turn-helix AVL55_00005 PF11638 DnaA N-terminal domain AVL55_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AVL55_00010 PF02767 DNA polymerase III beta subunit, central domain AVL55_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AVL55_00015 PF02463 RecF/RecN/SMC N terminal domain AVL55_00020 PF00204 DNA gyrase B AVL55_00020 PF00986 DNA gyrase B subunit, carboxyl terminus AVL55_00020 PF01751 Toprim domain AVL55_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_00030 PF02092 AVL55_00030 AVL55_00030 PF05746 DALR anticodon binding domain AVL55_00035 PF02091 Glycyl-tRNA synthetase alpha subunit AVL55_00040 PF03352 Methyladenine glycosylase AVL55_00045 PF10675 AVL55_00045 AVL55_00050 PF04220 AVL55_00050 AVL55_00055 PF13489 Methyltransferase domain AVL55_00060 PF00034 Cytochrome c AVL55_00065 PF01926 50S ribosome-binding GTPase AVL55_00070 PF00476 DNA polymerase family A AVL55_00070 PF01367 5'-3' exonuclease, C-terminal SAM fold AVL55_00070 PF01612 3'-5' exonuclease AVL55_00070 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AVL55_00075 PF01965 DJ-1/PfpI family AVL55_00080 PF02386 Cation transport protein AVL55_00085 PF02080 TrkA-C domain AVL55_00085 PF02254 TrkA-N domain AVL55_00090 PF01029 NusB family AVL55_00090 PF01189 NOL1/NOP2/sun family AVL55_00095 PF00551 Formyl transferase AVL55_00095 PF02911 Formyl transferase, C-terminal domain AVL55_00100 PF01327 Polypeptide deformylase AVL55_00105 PF01476 LysM domain AVL55_00110 PF02481 DNA recombination-mediator protein A AVL55_00115 PF04361 AVL55_00115 AVL55_00120 PF01396 AVL55_00120 AVL55_00125 PF01300 Telomere recombination AVL55_00130 PF01218 Coproporphyrinogen III oxidase AVL55_00135 PF03922 OmpW family AVL55_00140 PF01152 Bacterial-like globin AVL55_00145 PF01488 Shikimate / quinate 5-dehydrogenase AVL55_00145 PF08501 Shikimate dehydrogenase substrate binding domain AVL55_00150 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_00155 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AVL55_00185 PF09411 Lipid A 3-O-deacylase (PagL) AVL55_00200 PF01336 OB-fold nucleic acid binding domain AVL55_00200 PF02811 PHP domain AVL55_00200 PF07733 Bacterial DNA polymerase III alpha subunit AVL55_00200 PF14579 Helix-hairpin-helix motif AVL55_00205 PF00817 impB/mucB/samB family AVL55_00210 PF00154 recA bacterial DNA recombination protein AVL55_00220 PF05960 Bacterial protein of unknown function (DUF885) AVL55_00225 PF08850 AVL55_00225 AVL55_00230 PF02225 PA domain AVL55_00230 PF04389 Peptidase family M28 AVL55_00235 PF00440 Bacterial regulatory proteins, tetR family AVL55_00240 PF02441 Flavoprotein AVL55_00240 PF04127 DNA / pantothenate metabolism flavoprotein AVL55_00245 PF04002 RadC-like JAB domain AVL55_00255 PF11102 Group 4 capsule polysaccharide formation lipoprotein gfcB AVL55_00260 PF06251 Capsule biosynthesis GfcC AVL55_00265 PF06082 AVL55_00265 AVL55_00270 PF00830 Ribosomal L28 family AVL55_00275 PF00471 Ribosomal protein L33 AVL55_00285 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AVL55_00285 PF06827 Zinc finger found in FPG and IleRS AVL55_00285 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AVL55_00290 PF01467 Cytidylyltransferase AVL55_00295 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family AVL55_00310 PF00563 EAL domain AVL55_00310 PF00990 GGDEF domain AVL55_00310 PF14827 Sensory domain of two-component sensor kinase AVL55_00315 PF00155 Aminotransferase class I and II AVL55_00320 PF00107 Zinc-binding dehydrogenase AVL55_00320 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_00325 PF00581 Rhodanese-like domain AVL55_00330 PF01694 Rhomboid family AVL55_00330 PF12122 Protein of unknown function (DUF3582) AVL55_00335 PF03748 AVL55_00335 AVL55_00340 PF04345 Chorismate lyase AVL55_00345 PF01040 UbiA prenyltransferase family AVL55_00350 PF04380 AVL55_00350 AVL55_00355 PF00580 UvrD/REP helicase N-terminal domain AVL55_00355 PF13361 UvrD-like helicase C-terminal domain AVL55_00360 PF00563 EAL domain AVL55_00360 PF00990 GGDEF domain AVL55_00360 PF13185 GAF domain AVL55_00365 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVL55_00375 PF07804 HipA-like C-terminal domain AVL55_00375 PF13657 HipA N-terminal domain AVL55_00380 PF01381 Helix-turn-helix AVL55_00385 PF03553 AVL55_00385 AVL55_00390 PF02028 BCCT family transporter AVL55_00400 PF11173 AVL55_00400 AVL55_00445 PF13511 AVL55_00445 AVL55_00450 PF13395 HNH endonuclease AVL55_00450 PF13489 Methyltransferase domain AVL55_00455 PF00593 TonB dependent receptor AVL55_00455 PF07715 TonB-dependent Receptor Plug Domain AVL55_00470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_00470 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_00470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_00475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_00475 PF03466 LysR substrate binding domain AVL55_00480 PF00753 Metallo-beta-lactamase superfamily AVL55_00485 PF04317 AVL55_00485 AVL55_00490 PF05128 AVL55_00490 AVL55_00495 PF06738 AVL55_00495 AVL55_00495 PF12821 AVL55_00495 AVL55_00500 PF04055 Radical SAM superfamily AVL55_00500 PF06968 Biotin and Thiamin Synthesis associated domain AVL55_00505 PF05690 Thiazole biosynthesis protein ThiG AVL55_00510 PF02597 ThiS family AVL55_00515 PF00899 ThiF family AVL55_00520 PF02581 Thiamine monophosphate synthase/TENI AVL55_00520 PF08543 Phosphomethylpyrimidine kinase AVL55_00525 PF01964 ThiC family AVL55_00525 PF13667 ThiC-associated domain AVL55_00530 PF07219 AVL55_00530 AVL55_00535 PF04375 AVL55_00535 AVL55_00540 PF02602 Uroporphyrinogen-III synthase HemD AVL55_00545 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AVL55_00545 PF03900 Porphobilinogen deaminase, C-terminal domain AVL55_00550 PF00990 GGDEF domain AVL55_00555 PF02230 Phospholipase/Carboxylesterase AVL55_00560 PF00625 Guanylate kinase AVL55_00565 PF01192 RNA polymerase Rpb6 AVL55_00570 PF02824 TGS domain AVL55_00570 PF04607 Region found in RelA / SpoT proteins AVL55_00570 PF13291 ACT domain AVL55_00570 PF13328 HD domain AVL55_00575 PF01042 Endoribonuclease L-PSP AVL55_00580 PF00588 SpoU rRNA Methylase family AVL55_00580 PF12105 SpoU, rRNA methylase, C-terminal AVL55_00585 PF00270 DEAD/DEAH box helicase AVL55_00585 PF00271 Helicase conserved C-terminal domain AVL55_00585 PF17191 AVL55_00585 AVL55_00590 PF04445 Putative SAM-dependent methyltransferase AVL55_00595 PF08534 Redoxin AVL55_00605 PF13343 Bacterial extracellular solute-binding protein AVL55_00610 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_00615 PF00005 ABC transporter AVL55_00615 PF08402 TOBE domain AVL55_00620 PF03486 HI0933-like protein AVL55_00635 PF00873 AcrB/AcrD/AcrF family AVL55_00640 PF13437 HlyD family secretion protein AVL55_00640 PF16576 AVL55_00640 AVL55_00645 PF02321 Outer membrane efflux protein AVL55_00655 PF01545 Cation efflux family AVL55_00660 PF13411 MerR HTH family regulatory protein AVL55_00675 PF03922 OmpW family AVL55_00690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_00690 PF03466 LysR substrate binding domain AVL55_00695 PF01810 AVL55_00695 AVL55_00700 PF00893 Small Multidrug Resistance protein AVL55_00705 PF12339 AVL55_00705 AVL55_00710 PF16576 AVL55_00710 AVL55_00715 PF00873 AcrB/AcrD/AcrF family AVL55_00720 PF05728 Uncharacterised protein family (UPF0227) AVL55_00725 PF00583 Acetyltransferase (GNAT) family AVL55_00725 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AVL55_00725 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AVL55_00730 PF00850 Histone deacetylase domain AVL55_00735 PF00462 Glutaredoxin AVL55_00745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_00750 PF08443 RimK-like ATP-grasp domain AVL55_00755 PF11737 AVL55_00755 AVL55_00760 PF00925 GTP cyclohydrolase II AVL55_00765 PF00563 EAL domain AVL55_00765 PF00990 GGDEF domain AVL55_00765 PF07696 7TMR-DISM extracellular 2 AVL55_00765 PF13426 PAS domain AVL55_00775 PF00043 Glutathione S-transferase, C-terminal domain AVL55_00775 PF02798 Glutathione S-transferase, N-terminal domain AVL55_00780 PF00270 DEAD/DEAH box helicase AVL55_00780 PF00271 Helicase conserved C-terminal domain AVL55_00780 PF00570 HRDC domain AVL55_00780 PF09382 RQC domain AVL55_00780 PF16124 AVL55_00780 AVL55_00785 PF03061 Thioesterase superfamily AVL55_00790 PF01769 Divalent cation transporter AVL55_00790 PF03448 MgtE intracellular N domain AVL55_00795 PF00892 EamA-like transporter family AVL55_00800 PF00072 Response regulator receiver domain AVL55_00800 PF00990 GGDEF domain AVL55_00805 PF00580 UvrD/REP helicase N-terminal domain AVL55_00805 PF13361 UvrD-like helicase C-terminal domain AVL55_00810 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_00810 PF06426 Serine acetyltransferase, N-terminal AVL55_00815 PF00990 GGDEF domain AVL55_00820 PF13419 Haloacid dehalogenase-like hydrolase AVL55_00825 PF00589 Phage integrase family AVL55_00825 PF02899 Phage integrase, N-terminal SAM-like domain AVL55_00830 PF04340 Protein of unknown function, DUF484 AVL55_00835 PF01678 Diaminopimelate epimerase AVL55_00840 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AVL55_00840 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AVL55_00845 PF13627 AVL55_00845 AVL55_00850 PF13528 Glycosyl transferase family 1 AVL55_00855 PF01569 PAP2 superfamily AVL55_00860 PF03737 Demethylmenaquinone methyltransferase AVL55_00865 PF02265 S1/P1 Nuclease AVL55_00870 PF02441 Flavoprotein AVL55_00875 PF01225 Mur ligase family, catalytic domain AVL55_00875 PF02875 Mur ligase family, glutamate ligase domain AVL55_00875 PF08245 Mur ligase middle domain AVL55_00880 PF00316 Fructose-1-6-bisphosphatase AVL55_00885 PF00719 Inorganic pyrophosphatase AVL55_00890 PF11736 Protein of unknown function (DUF3299) AVL55_00895 PF00701 Dihydrodipicolinate synthetase family AVL55_00900 PF13640 2OG-Fe(II) oxygenase superfamily AVL55_00905 PF13279 Thioesterase-like superfamily AVL55_00910 PF00012 Hsp70 protein AVL55_00915 PF00005 ABC transporter AVL55_00920 PF07690 Major Facilitator Superfamily AVL55_00935 PF00356 Bacterial regulatory proteins, lacI family AVL55_00935 PF13377 Periplasmic binding protein-like domain AVL55_00940 PF01263 Aldose 1-epimerase AVL55_00945 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AVL55_00945 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AVL55_00950 PF00288 GHMP kinases N terminal domain AVL55_00950 PF08544 GHMP kinases C terminal AVL55_00950 PF10509 Galactokinase galactose-binding signature AVL55_00955 PF00474 Sodium:solute symporter family AVL55_00960 PF00436 Single-strand binding protein family AVL55_00965 PF00589 Phage integrase family AVL55_00980 PF04055 Radical SAM superfamily AVL55_00980 PF13353 4Fe-4S single cluster domain AVL55_00985 PF04055 Radical SAM superfamily AVL55_00985 PF13353 4Fe-4S single cluster domain AVL55_01000 PF03150 Di-haem cytochrome c peroxidase AVL55_01005 PF03150 Di-haem cytochrome c peroxidase AVL55_01010 PF07510 AVL55_01010 AVL55_01025 PF00703 Glycosyl hydrolases family 2 AVL55_01025 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AVL55_01025 PF02837 Glycosyl hydrolases family 2, sugar binding domain AVL55_01025 PF16355 AVL55_01025 AVL55_01030 PF00593 TonB dependent receptor AVL55_01030 PF07715 TonB-dependent Receptor Plug Domain AVL55_01035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AVL55_01035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AVL55_01040 PF00455 AVL55_01040 AVL55_01040 PF08220 DeoR-like helix-turn-helix domain AVL55_01045 PF01266 FAD dependent oxidoreductase AVL55_01045 PF16901 AVL55_01045 AVL55_01065 PF06723 MreB/Mbl protein AVL55_01070 PF04085 rod shape-determining protein MreC AVL55_01075 PF04093 AVL55_01075 AVL55_01080 PF02545 Maf-like protein AVL55_01085 PF00575 S1 RNA binding domain AVL55_01085 PF10150 Ribonuclease E/G family AVL55_01090 PF13116 AVL55_01090 AVL55_01090 PF13502 AVL55_01090 AVL55_01095 PF00795 Carbon-nitrogen hydrolase AVL55_01100 PF01523 Putative modulator of DNA gyrase AVL55_01110 PF04751 Protein of unknown function (DUF615) AVL55_01115 PF01523 Putative modulator of DNA gyrase AVL55_01125 PF02929 Beta galactosidase small chain AVL55_01130 PF00072 Response regulator receiver domain AVL55_01130 PF00486 Transcriptional regulatory protein, C terminal AVL55_01135 PF00512 His Kinase A (phospho-acceptor) domain AVL55_01135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_01140 PF00534 Glycosyl transferases group 1 AVL55_01140 PF08323 Starch synthase catalytic domain AVL55_01145 PF05175 Methyltransferase small domain AVL55_01145 PF08468 Methyltransferase small domain N-terminal AVL55_01150 PF02390 Putative methyltransferase AVL55_01155 PF12697 Alpha/beta hydrolase family AVL55_01160 PF00633 Helix-hairpin-helix motif AVL55_01160 PF00730 HhH-GPD superfamily base excision DNA repair protein AVL55_01160 PF10576 Iron-sulfur binding domain of endonuclease III AVL55_01160 PF14815 NUDIX domain AVL55_01165 PF04362 Bacterial Fe(2+) trafficking AVL55_01175 PF00817 impB/mucB/samB family AVL55_01180 PF00717 Peptidase S24-like AVL55_01190 PF08843 Nucleotidyl transferase of unknown function (DUF1814) AVL55_01195 PF00072 Response regulator receiver domain AVL55_01200 PF01575 MaoC like domain AVL55_01205 PF04055 Radical SAM superfamily AVL55_01205 PF13394 4Fe-4S single cluster domain AVL55_01210 PF05138 Phenylacetic acid catabolic protein AVL55_01215 PF00239 Resolvase, N terminal domain AVL55_01215 PF02796 Helix-turn-helix domain of resolvase AVL55_01220 PF01526 AVL55_01220 AVL55_01220 PF13700 AVL55_01220 AVL55_01240 PF00376 MerR family regulatory protein AVL55_01240 PF09278 MerR, DNA binding AVL55_01245 PF00122 E1-E2 ATPase AVL55_01245 PF00403 Heavy-metal-associated domain AVL55_01245 PF00702 haloacid dehalogenase-like hydrolase AVL55_01250 PF13473 Cupredoxin-like domain AVL55_01255 PF11666 AVL55_01255 AVL55_01260 PF04191 Phospholipid methyltransferase AVL55_01290 PF02321 Outer membrane efflux protein AVL55_01295 PF13533 Biotin-lipoyl like AVL55_01295 PF16576 AVL55_01295 AVL55_01300 PF00873 AcrB/AcrD/AcrF family AVL55_01305 PF01545 Cation efflux family AVL55_01310 PF13127 AVL55_01310 AVL55_01315 PF01219 Prokaryotic diacylglycerol kinase AVL55_01320 PF00884 Sulfatase AVL55_01320 PF08019 AVL55_01320 AVL55_01325 PF13231 AVL55_01325 AVL55_01330 PF09335 AVL55_01330 AVL55_01335 PF00535 Glycosyl transferase family 2 AVL55_01340 PF00072 Response regulator receiver domain AVL55_01340 PF00486 Transcriptional regulatory protein, C terminal AVL55_01345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_01350 PF04214 AVL55_01350 AVL55_01355 PF04234 CopC domain AVL55_01360 PF05425 AVL55_01360 AVL55_01365 PF13474 SnoaL-like domain AVL55_01375 PF00551 Formyl transferase AVL55_01385 PF00376 MerR family regulatory protein AVL55_01385 PF09278 MerR, DNA binding AVL55_01390 PF00122 E1-E2 ATPase AVL55_01390 PF00403 Heavy-metal-associated domain AVL55_01390 PF00702 haloacid dehalogenase-like hydrolase AVL55_01395 PF13473 Cupredoxin-like domain AVL55_01400 PF11666 AVL55_01400 AVL55_01405 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AVL55_01425 PF13520 Amino acid permease AVL55_01430 PF05275 AVL55_01430 AVL55_01435 PF00394 Multicopper oxidase AVL55_01435 PF07731 Multicopper oxidase AVL55_01435 PF07732 Multicopper oxidase AVL55_01450 PF00990 GGDEF domain AVL55_01455 PF00892 EamA-like transporter family AVL55_01460 PF13419 Haloacid dehalogenase-like hydrolase AVL55_01465 PF00072 Response regulator receiver domain AVL55_01465 PF00512 His Kinase A (phospho-acceptor) domain AVL55_01465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_01465 PF12833 Helix-turn-helix domain AVL55_01470 PF11872 AVL55_01470 AVL55_01475 PF01261 Xylose isomerase-like TIM barrel AVL55_01480 PF00356 Bacterial regulatory proteins, lacI family AVL55_01480 PF13377 Periplasmic binding protein-like domain AVL55_01485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVL55_01485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AVL55_01490 PF01261 Xylose isomerase-like TIM barrel AVL55_01490 PF07582 AP endonuclease family 2 C terminus AVL55_01495 PF03825 AVL55_01495 AVL55_01500 PF01261 Xylose isomerase-like TIM barrel AVL55_01505 PF00732 GMC oxidoreductase AVL55_01505 PF05199 GMC oxidoreductase AVL55_01510 PF13618 AVL55_01510 AVL55_01515 PF06439 Domain of Unknown Function (DUF1080) AVL55_01520 PF00465 Iron-containing alcohol dehydrogenase AVL55_01550 PF01063 Aminotransferase class IV AVL55_01555 PF00300 Histidine phosphatase superfamily (branch 1) AVL55_01560 PF06172 Cupin superfamily (DUF985) AVL55_01570 PF00330 Aconitase family (aconitate hydratase) AVL55_01570 PF00694 Aconitase C-terminal domain AVL55_01580 PF00437 Type II/IV secretion system protein AVL55_01580 PF01590 GAF domain AVL55_01580 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AVL55_01585 PF00338 Ribosomal protein S10p/S20e AVL55_01590 PF00297 Ribosomal protein L3 AVL55_01595 PF00573 Ribosomal protein L4/L1 family AVL55_01600 PF00276 Ribosomal protein L23 AVL55_01605 PF00181 Ribosomal Proteins L2, RNA binding domain AVL55_01605 PF03947 Ribosomal Proteins L2, C-terminal domain AVL55_01610 PF00203 Ribosomal protein S19 AVL55_01615 PF00237 Ribosomal protein L22p/L17e AVL55_01620 PF00189 Ribosomal protein S3, C-terminal domain AVL55_01620 PF07650 KH domain AVL55_01625 PF00252 Ribosomal protein L16p/L10e AVL55_01630 PF00831 Ribosomal L29 protein AVL55_01635 PF00366 Ribosomal protein S17 AVL55_01640 PF00534 Glycosyl transferases group 1 AVL55_01640 PF13439 Glycosyltransferase Family 4 AVL55_01645 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AVL55_01650 PF00999 Sodium/hydrogen exchanger family AVL55_01650 PF02254 TrkA-N domain AVL55_01665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_01665 PF00672 HAMP domain AVL55_01665 PF02743 Cache domain AVL55_01670 PF01432 Peptidase family M3 AVL55_01680 PF10688 AVL55_01680 AVL55_01690 PF00551 Formyl transferase AVL55_01690 PF01842 ACT domain AVL55_01695 PF02834 LigT like Phosphoesterase AVL55_01700 PF00270 DEAD/DEAH box helicase AVL55_01700 PF00271 Helicase conserved C-terminal domain AVL55_01700 PF04408 Helicase associated domain (HA2) AVL55_01700 PF08482 AVL55_01700 AVL55_01705 PF10670 AVL55_01705 AVL55_01710 PF01471 Putative peptidoglycan binding domain AVL55_01710 PF13406 Transglycosylase SLT domain AVL55_01715 PF00905 Penicillin binding protein transpeptidase domain AVL55_01715 PF00912 Transglycosylase AVL55_01715 PF14814 Bifunctional transglycosylase second domain AVL55_01725 PF05661 AVL55_01725 AVL55_01730 PF12833 Helix-turn-helix domain AVL55_01740 PF00543 Nitrogen regulatory protein P-II AVL55_01745 PF00909 Ammonium Transporter Family AVL55_01755 PF00563 EAL domain AVL55_01755 PF00989 PAS fold AVL55_01755 PF00990 GGDEF domain AVL55_01755 PF08447 PAS fold AVL55_01760 PF05787 Bacterial protein of unknown function (DUF839) AVL55_01765 PF06628 Catalase-related immune-responsive AVL55_01775 PF00248 Aldo/keto reductase family AVL55_01780 PF02690 AVL55_01780 AVL55_01785 PF01019 Gamma-glutamyltranspeptidase AVL55_01790 PF04261 Dyp-type peroxidase family AVL55_01795 PF00202 Aminotransferase class-III AVL55_01800 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AVL55_01800 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AVL55_01805 PF00440 Bacterial regulatory proteins, tetR family AVL55_01810 PF16576 AVL55_01810 AVL55_01820 PF11201 AVL55_01820 AVL55_01825 PF00072 Response regulator receiver domain AVL55_01825 PF00512 His Kinase A (phospho-acceptor) domain AVL55_01825 PF01627 Hpt domain AVL55_01825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_01825 PF07695 AVL55_01825 AVL55_01825 PF07696 7TMR-DISM extracellular 2 AVL55_01830 PF00521 DNA gyrase/topoisomerase IV, subunit A AVL55_01830 PF03989 DNA gyrase C-terminal domain, beta-propeller AVL55_01835 PF07700 Heme NO binding AVL55_01840 PF00563 EAL domain AVL55_01840 PF00990 GGDEF domain AVL55_01840 PF13426 PAS domain AVL55_01845 PF07063 Domain of unknown function (DUF1338) AVL55_01850 PF00171 Aldehyde dehydrogenase family AVL55_01855 PF04958 Arginine N-succinyltransferase beta subunit AVL55_01860 PF00202 Aminotransferase class-III AVL55_01865 PF08668 HDOD domain AVL55_01870 PF00117 Glutamine amidotransferase class-I AVL55_01875 PF00579 tRNA synthetases class I (W and Y) AVL55_01880 PF00834 Ribulose-phosphate 3 epimerase family AVL55_01885 PF09694 AVL55_01885 AVL55_01895 PF11174 AVL55_01895 AVL55_01900 PF02086 D12 class N6 adenine-specific DNA methyltransferase AVL55_01910 PF01761 3-dehydroquinate synthase AVL55_01915 PF01202 Shikimate kinase AVL55_01920 PF00263 AVL55_01920 AVL55_01920 PF03958 Bacterial type II/III secretion system short domain AVL55_01925 PF04351 Pilus assembly protein, PilP AVL55_01930 PF04350 Pilus assembly protein, PilO AVL55_01935 PF05137 AVL55_01935 AVL55_01940 PF11104 Type IV pilus assembly protein PilM; AVL55_01945 PF00905 Penicillin binding protein transpeptidase domain AVL55_01945 PF00912 Transglycosylase AVL55_01945 PF17092 AVL55_01945 AVL55_01950 PF00390 Malic enzyme, N-terminal domain AVL55_01950 PF03949 Malic enzyme, NAD binding domain AVL55_01955 PF14321 AVL55_01955 AVL55_01960 PF02798 Glutathione S-transferase, N-terminal domain AVL55_01960 PF13410 Glutathione S-transferase, C-terminal domain AVL55_01970 PF00199 Catalase AVL55_01970 PF06628 Catalase-related immune-responsive AVL55_01975 PF14019 AVL55_01975 AVL55_01980 PF12146 Putative lysophospholipase AVL55_01985 PF00583 Acetyltransferase (GNAT) family AVL55_01985 PF00696 Amino acid kinase family AVL55_01990 PF00206 Lyase AVL55_01990 PF14698 Argininosuccinate lyase C-terminal AVL55_01995 PF00764 Arginosuccinate synthase AVL55_02000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AVL55_02000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AVL55_02005 PF00696 Amino acid kinase family AVL55_02010 PF01118 Semialdehyde dehydrogenase, NAD binding domain AVL55_02010 PF02774 Semialdehyde dehydrogenase, dimerisation domain AVL55_02015 PF02142 MGS-like domain AVL55_02025 PF00072 Response regulator receiver domain AVL55_02025 PF00486 Transcriptional regulatory protein, C terminal AVL55_02030 PF00512 His Kinase A (phospho-acceptor) domain AVL55_02030 PF00672 HAMP domain AVL55_02030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_02035 PF12146 Putative lysophospholipase AVL55_02040 PF00588 SpoU rRNA Methylase family AVL55_02050 PF00005 ABC transporter AVL55_02050 PF02687 AVL55_02050 AVL55_02050 PF12704 MacB-like periplasmic core domain AVL55_02055 PF02321 Outer membrane efflux protein AVL55_02060 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AVL55_02060 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AVL55_02065 PF02556 Preprotein translocase subunit SecB AVL55_02070 PF00462 Glutaredoxin AVL55_02075 PF00581 Rhodanese-like domain AVL55_02080 PF01551 Peptidase family M23 AVL55_02085 PF04748 Divergent polysaccharide deacetylase AVL55_02090 PF03203 AVL55_02090 AVL55_02095 PF03009 Glycerophosphoryl diester phosphodiesterase family AVL55_02100 PF00892 EamA-like transporter family AVL55_02105 PF02666 AVL55_02105 AVL55_02110 PF03193 Protein of unknown function, DUF258 AVL55_02115 PF00929 Exonuclease AVL55_02135 PF00128 Alpha amylase, catalytic domain AVL55_02135 PF02806 Alpha amylase, C-terminal all-beta domain AVL55_02140 PF14539 Domain of unknown function (DUF4442) AVL55_02145 PF04219 AVL55_02145 AVL55_02150 PF00205 Thiamine pyrophosphate enzyme, central domain AVL55_02150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVL55_02150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVL55_02155 PF10369 Small subunit of acetolactate synthase AVL55_02155 PF13710 ACT domain AVL55_02165 PF02416 mttA/Hcf106 family AVL55_02170 PF02416 mttA/Hcf106 family AVL55_02175 PF00902 Sec-independent protein translocase protein (TatC) AVL55_02185 PF01026 TatD related DNase AVL55_02190 PF00990 GGDEF domain AVL55_02190 PF07695 AVL55_02190 AVL55_02190 PF07696 7TMR-DISM extracellular 2 AVL55_02195 PF00490 Delta-aminolevulinic acid dehydratase AVL55_02200 PF02541 Ppx/GppA phosphatase family AVL55_02205 PF00270 DEAD/DEAH box helicase AVL55_02205 PF00271 Helicase conserved C-terminal domain AVL55_02210 PF00085 Thioredoxin AVL55_02215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVL55_02215 PF07497 Rho termination factor, RNA-binding domain AVL55_02215 PF07498 Rho termination factor, N-terminal domain AVL55_02220 PF01546 Peptidase family M20/M25/M40 AVL55_02220 PF07687 Peptidase dimerisation domain AVL55_02225 PF00072 Response regulator receiver domain AVL55_02225 PF00512 His Kinase A (phospho-acceptor) domain AVL55_02225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_02225 PF02743 Cache domain AVL55_02230 PF06965 Na+/H+ antiporter 1 AVL55_02235 PF00731 AIR carboxylase AVL55_02240 PF02222 ATP-grasp domain AVL55_02250 PF04314 Protein of unknown function (DUF461) AVL55_02255 PF00210 Ferritin-like domain AVL55_02260 PF07995 Glucose / Sorbosone dehydrogenase AVL55_02265 PF00326 Prolyl oligopeptidase family AVL55_02265 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AVL55_02270 PF06127 AVL55_02270 AVL55_02275 PF00085 Thioredoxin AVL55_02275 PF14559 Tetratricopeptide repeat AVL55_02275 PF14561 Tetratricopeptide repeat AVL55_02285 PF00266 Aminotransferase class-V AVL55_02290 PF09838 AVL55_02290 AVL55_02295 PF00709 Adenylosuccinate synthetase AVL55_02300 PF00171 Aldehyde dehydrogenase family AVL55_02305 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL55_02310 PF01936 NYN domain AVL55_02315 PF01019 Gamma-glutamyltranspeptidase AVL55_02320 PF03553 AVL55_02320 AVL55_02325 PF00933 Glycosyl hydrolase family 3 N terminal domain AVL55_02330 PF00924 Mechanosensitive ion channel AVL55_02335 PF07075 Protein of unknown function (DUF1343) AVL55_02340 PF13580 SIS domain AVL55_02345 PF00842 Alanine racemase, C-terminal domain AVL55_02345 PF01168 Alanine racemase, N-terminal domain AVL55_02350 PF02588 AVL55_02350 AVL55_02360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL55_02365 PF07073 Modulator of Rho-dependent transcription termination (ROF) AVL55_02375 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL55_02380 PF13372 Alginate export AVL55_02395 PF00464 Serine hydroxymethyltransferase AVL55_02400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_02400 PF03466 LysR substrate binding domain AVL55_02405 PF03831 PhnA protein AVL55_02405 PF08274 PhnA Zinc-Ribbon AVL55_02410 PF00583 Acetyltransferase (GNAT) family AVL55_02415 PF00583 Acetyltransferase (GNAT) family AVL55_02420 PF02694 AVL55_02420 AVL55_02425 PF03544 Gram-negative bacterial TonB protein C-terminal AVL55_02440 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AVL55_02440 PF08388 AVL55_02440 AVL55_02445 PF01381 Helix-turn-helix AVL55_02450 PF06769 Plasmid encoded toxin Txe AVL55_02455 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AVL55_02460 PF01381 Helix-turn-helix AVL55_02475 PF11903 AVL55_02475 AVL55_02480 PF15781 AVL55_02480 AVL55_02485 PF01548 AVL55_02485 AVL55_02485 PF02371 AVL55_02485 AVL55_02515 PF00589 Phage integrase family AVL55_02515 PF13495 Phage integrase, N-terminal SAM-like domain AVL55_02520 PF00108 Thiolase, N-terminal domain AVL55_02520 PF02803 Thiolase, C-terminal domain AVL55_02525 PF00378 Enoyl-CoA hydratase/isomerase family AVL55_02525 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVL55_02525 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVL55_02530 PF01464 Transglycosylase SLT domain AVL55_02530 PF14718 Soluble lytic murein transglycosylase L domain AVL55_02535 PF00557 Metallopeptidase family M24 AVL55_02545 PF00348 Polyprenyl synthetase AVL55_02550 PF00829 Ribosomal prokaryotic L21 protein AVL55_02555 PF01016 Ribosomal L27 protein AVL55_02560 PF01018 GTP1/OBG AVL55_02560 PF01926 50S ribosome-binding GTPase AVL55_02565 PF00717 Peptidase S24-like AVL55_02570 PF09055 Nickel-containing superoxide dismutase AVL55_02590 PF00186 Dihydrofolate reductase AVL55_02595 PF00140 Sigma-70 factor, region 1 AVL55_02595 PF04539 Sigma-70 region 3 AVL55_02595 PF04542 Sigma-70 region 2 AVL55_02595 PF04545 Sigma-70, region 4 AVL55_02600 PF01476 LysM domain AVL55_02600 PF01551 Peptidase family M23 AVL55_02605 PF09335 AVL55_02605 AVL55_02610 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AVL55_02615 PF01142 tRNA pseudouridine synthase D (TruD) AVL55_02620 PF02542 YgbB family AVL55_02625 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AVL55_02630 PF04977 Septum formation initiator AVL55_02640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_02640 PF00672 HAMP domain AVL55_02640 PF17200 AVL55_02640 AVL55_02645 PF01037 AsnC family AVL55_02645 PF13412 Winged helix-turn-helix DNA-binding AVL55_02650 PF00107 Zinc-binding dehydrogenase AVL55_02650 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_02660 PF00171 Aldehyde dehydrogenase family AVL55_02660 PF01619 Proline dehydrogenase AVL55_02660 PF14850 DNA-binding domain of Proline dehydrogenase AVL55_02665 PF02321 Outer membrane efflux protein AVL55_02670 PF13437 HlyD family secretion protein AVL55_02675 PF00873 AcrB/AcrD/AcrF family AVL55_02680 PF00072 Response regulator receiver domain AVL55_02680 PF00486 Transcriptional regulatory protein, C terminal AVL55_02685 PF00512 His Kinase A (phospho-acceptor) domain AVL55_02690 PF08239 Bacterial SH3 domain AVL55_02695 PF01928 CYTH domain AVL55_02705 PF02976 DNA mismatch repair enzyme MutH AVL55_02710 PF00293 NUDIX domain AVL55_02715 PF00391 PEP-utilising enzyme, mobile domain AVL55_02715 PF01590 GAF domain AVL55_02715 PF02896 PEP-utilising enzyme, TIM barrel domain AVL55_02715 PF05524 PEP-utilising enzyme, N-terminal AVL55_02720 PF01925 AVL55_02720 AVL55_02725 PF01790 AVL55_02725 AVL55_02730 PF00303 Thymidylate synthase AVL55_02735 PF00072 Response regulator receiver domain AVL55_02740 PF00990 GGDEF domain AVL55_02745 PF00072 Response regulator receiver domain AVL55_02745 PF00512 His Kinase A (phospho-acceptor) domain AVL55_02745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_02750 PF07690 Major Facilitator Superfamily AVL55_02760 PF12048 AVL55_02760 AVL55_02765 PF00849 RNA pseudouridylate synthase AVL55_02770 PF00176 SNF2 family N-terminal domain AVL55_02770 PF00271 Helicase conserved C-terminal domain AVL55_02770 PF12137 RNA polymerase recycling family C-terminal AVL55_02780 PF02562 PhoH-like protein AVL55_02780 PF13638 PIN domain AVL55_02785 PF00155 Aminotransferase class I and II AVL55_02785 PF00392 Bacterial regulatory proteins, gntR family AVL55_02790 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AVL55_02790 PF12801 AVL55_02790 AVL55_02790 PF13746 4Fe-4S dicluster domain AVL55_02805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVL55_02805 PF10414 Sirohaem synthase dimerisation region AVL55_02805 PF13241 Putative NAD(P)-binding AVL55_02810 PF00270 DEAD/DEAH box helicase AVL55_02810 PF00271 Helicase conserved C-terminal domain AVL55_02810 PF03880 DbpA RNA binding domain AVL55_02815 PF13414 TPR repeat AVL55_02815 PF13432 Tetratricopeptide repeat AVL55_02815 PF14559 Tetratricopeptide repeat AVL55_02820 PF00520 Ion transport protein AVL55_02825 PF02321 Outer membrane efflux protein AVL55_02830 PF00293 NUDIX domain AVL55_02835 PF06853 AVL55_02835 AVL55_02840 PF00149 Calcineurin-like phosphoesterase AVL55_02845 PF05728 Uncharacterised protein family (UPF0227) AVL55_02850 PF00204 DNA gyrase B AVL55_02850 PF00986 DNA gyrase B subunit, carboxyl terminus AVL55_02850 PF01751 Toprim domain AVL55_02850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_02860 PF13419 Haloacid dehalogenase-like hydrolase AVL55_02870 PF07445 Primosomal replication protein priB and priC AVL55_02880 PF04055 Radical SAM superfamily AVL55_02880 PF13353 4Fe-4S single cluster domain AVL55_02885 PF01132 Elongation factor P (EF-P) OB domain AVL55_02885 PF08207 Elongation factor P (EF-P) KOW-like domain AVL55_02885 PF09285 Elongation factor P, C-terminal AVL55_02890 PF00152 tRNA synthetases class II (D, K and N) AVL55_02895 PF00593 TonB dependent receptor AVL55_02895 PF07715 TonB-dependent Receptor Plug Domain AVL55_02895 PF13620 Carboxypeptidase regulatory-like domain AVL55_02905 PF13302 Acetyltransferase (GNAT) domain AVL55_02910 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AVL55_02915 PF05175 Methyltransferase small domain AVL55_02920 PF13532 2OG-Fe(II) oxygenase superfamily AVL55_02925 PF01722 BolA-like protein AVL55_02930 PF01569 PAP2 superfamily AVL55_02935 PF06042 Bacterial protein of unknown function (DUF925) AVL55_02940 PF03861 ANTAR domain AVL55_02940 PF08376 Nitrate and nitrite sensing AVL55_02950 PF00916 AVL55_02950 AVL55_02950 PF01740 STAS domain AVL55_02955 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AVL55_02955 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AVL55_02955 PF04324 BFD-like [2Fe-2S] binding domain AVL55_02955 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_02960 PF13806 Rieske-like [2Fe-2S] domain AVL55_02965 PF00384 Molybdopterin oxidoreductase AVL55_02965 PF01568 Molydopterin dinucleotide binding domain AVL55_02965 PF04324 BFD-like [2Fe-2S] binding domain AVL55_02965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AVL55_02970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVL55_02975 PF00591 Glycosyl transferase family, a/b domain AVL55_02975 PF02885 Glycosyl transferase family, helical bundle domain AVL55_02980 PF02872 5'-nucleotidase, C-terminal domain AVL55_02985 PF00990 GGDEF domain AVL55_02990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_02990 PF13426 PAS domain AVL55_02995 PF13379 NMT1-like family AVL55_03000 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_03005 PF00005 ABC transporter AVL55_03010 PF13372 Alginate export AVL55_03015 PF13023 HD domain AVL55_03020 PF01323 DSBA-like thioredoxin domain AVL55_03025 PF00593 TonB dependent receptor AVL55_03025 PF07715 TonB-dependent Receptor Plug Domain AVL55_03030 PF01636 Phosphotransferase enzyme family AVL55_03035 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AVL55_03035 PF12801 AVL55_03035 AVL55_03035 PF13746 4Fe-4S dicluster domain AVL55_03045 PF11454 AVL55_03045 AVL55_03050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_03050 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_03050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_03050 PF12806 AVL55_03050 AVL55_03055 PF13561 Enoyl-(Acyl carrier protein) reductase AVL55_03060 PF04909 Amidohydrolase AVL55_03065 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AVL55_03065 PF13378 Enolase C-terminal domain-like AVL55_03070 PF00596 Class II Aldolase and Adducin N-terminal domain AVL55_03075 PF00293 NUDIX domain AVL55_03080 PF16576 AVL55_03080 AVL55_03085 PF00873 AcrB/AcrD/AcrF family AVL55_03100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_03105 PF00140 Sigma-70 factor, region 1 AVL55_03105 PF03979 Sigma-70 factor, region 1 AVL55_03105 PF04539 Sigma-70 region 3 AVL55_03105 PF04542 Sigma-70 region 2 AVL55_03105 PF04545 Sigma-70, region 4 AVL55_03105 PF04546 Sigma-70, non-essential region AVL55_03110 PF01807 CHC2 zinc finger AVL55_03110 PF08275 DNA primase catalytic core, N-terminal domain AVL55_03110 PF08278 DNA primase DnaG DnaB-binding AVL55_03110 PF10410 DnaB-helicase binding domain of primase AVL55_03110 PF13662 Toprim domain AVL55_03115 PF09424 Yqey-like protein AVL55_03120 PF01165 Ribosomal protein S21 AVL55_03125 PF00814 Glycoprotease family AVL55_03130 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AVL55_03135 PF02660 AVL55_03135 AVL55_03140 PF02152 Dihydroneopterin aldolase AVL55_03145 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AVL55_03150 PF02673 AVL55_03150 AVL55_03155 PF01230 HIT domain AVL55_03160 PF03571 Peptidase family M49 AVL55_03165 PF08668 HDOD domain AVL55_03170 PF03594 AVL55_03170 AVL55_03175 PF01381 Helix-turn-helix AVL55_03180 PF04381 Putative exonuclease, RdgC AVL55_03185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_03190 PF00072 Response regulator receiver domain AVL55_03190 PF00486 Transcriptional regulatory protein, C terminal AVL55_03195 PF00512 His Kinase A (phospho-acceptor) domain AVL55_03195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_03195 PF11808 AVL55_03195 AVL55_03200 PF12849 PBP superfamily domain AVL55_03215 PF00593 TonB dependent receptor AVL55_03215 PF07715 TonB-dependent Receptor Plug Domain AVL55_03220 PF11932 AVL55_03220 AVL55_03225 PF01618 AVL55_03225 AVL55_03230 PF01618 AVL55_03230 AVL55_03235 PF02472 Biopolymer transport protein ExbD/TolR AVL55_03240 PF03544 Gram-negative bacterial TonB protein C-terminal AVL55_03245 PF13181 Tetratricopeptide repeat AVL55_03245 PF13432 Tetratricopeptide repeat AVL55_03250 PF00501 AMP-binding enzyme AVL55_03250 PF13193 AMP-binding enzyme C-terminal domain AVL55_03260 PF07995 Glucose / Sorbosone dehydrogenase AVL55_03265 PF00330 Aconitase family (aconitate hydratase) AVL55_03265 PF06434 Aconitate hydratase 2 N-terminus AVL55_03265 PF11791 Aconitate B N-terminal domain AVL55_03270 PF00072 Response regulator receiver domain AVL55_03270 PF00512 His Kinase A (phospho-acceptor) domain AVL55_03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_03275 PF00756 Putative esterase AVL55_03275 PF14559 Tetratricopeptide repeat AVL55_03285 PF01068 ATP dependent DNA ligase domain AVL55_03285 PF14743 DNA ligase OB-like domain AVL55_03290 PF00330 Aconitase family (aconitate hydratase) AVL55_03290 PF06434 Aconitate hydratase 2 N-terminus AVL55_03290 PF11791 Aconitate B N-terminal domain AVL55_03295 PF02643 Uncharacterized ACR, COG1430 AVL55_03300 PF00696 Amino acid kinase family AVL55_03305 PF04832 SOUL heme-binding protein AVL55_03310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_03310 PF12729 AVL55_03310 AVL55_03315 PF00149 Calcineurin-like phosphoesterase AVL55_03320 PF04379 Protein of unknown function (DUF525) AVL55_03325 PF00398 Ribosomal RNA adenine dimethylase AVL55_03330 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AVL55_03335 PF00639 PPIC-type PPIASE domain AVL55_03335 PF09312 SurA N-terminal domain AVL55_03340 PF03968 OstA-like protein AVL55_03340 PF04453 Organic solvent tolerance protein AVL55_03350 PF00226 DnaJ domain AVL55_03350 PF05099 Tellurite resistance protein TerB AVL55_03355 PF00589 Phage integrase family AVL55_03355 PF02899 Phage integrase, N-terminal SAM-like domain AVL55_03360 PF10411 Disulfide bond isomerase protein N-terminus AVL55_03360 PF13098 Thioredoxin-like domain AVL55_03365 PF01368 DHH family AVL55_03365 PF02272 DHHA1 domain AVL55_03375 PF02565 Recombination protein O C terminal AVL55_03375 PF11967 Recombination protein O N terminal AVL55_03380 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AVL55_03385 PF01648 4'-phosphopantetheinyl transferase superfamily AVL55_03390 PF05958 tRNA (Uracil-5-)-methyltransferase AVL55_03395 PF02824 TGS domain AVL55_03395 PF04607 Region found in RelA / SpoT proteins AVL55_03395 PF13291 ACT domain AVL55_03395 PF13328 HD domain AVL55_03400 PF03819 MazG nucleotide pyrophosphohydrolase domain AVL55_03405 PF04304 AVL55_03405 AVL55_03410 PF00368 Hydroxymethylglutaryl-coenzyme A reductase AVL55_03425 PF00106 short chain dehydrogenase AVL55_03430 PF14518 Iron-containing redox enzyme AVL55_03435 PF00501 AMP-binding enzyme AVL55_03440 PF12261 AVL55_03440 AVL55_03445 PF13231 AVL55_03445 AVL55_03450 PF09335 AVL55_03450 AVL55_03455 PF00535 Glycosyl transferase family 2 AVL55_03470 PF13473 Cupredoxin-like domain AVL55_03475 PF00512 His Kinase A (phospho-acceptor) domain AVL55_03475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_03480 PF00072 Response regulator receiver domain AVL55_03480 PF00486 Transcriptional regulatory protein, C terminal AVL55_03490 PF00572 Ribosomal protein L13 AVL55_03495 PF00380 Ribosomal protein S9/S16 AVL55_03500 PF00355 Rieske [2Fe-2S] domain AVL55_03500 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AVL55_03505 PF00032 Cytochrome b(C-terminal)/b6/petD AVL55_03505 PF00033 Cytochrome b(N-terminal)/b6/petB AVL55_03510 PF02167 Cytochrome C1 family AVL55_03515 PF00043 Glutathione S-transferase, C-terminal domain AVL55_03515 PF13417 Glutathione S-transferase, N-terminal domain AVL55_03520 PF04386 Stringent starvation protein B AVL55_03525 PF00571 CBS domain AVL55_03525 PF01769 Divalent cation transporter AVL55_03525 PF03448 MgtE intracellular N domain AVL55_03530 PF00381 PTS HPr component phosphorylation site AVL55_03535 PF03668 AVL55_03535 AVL55_03540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AVL55_03545 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AVL55_03550 PF00309 AVL55_03550 AVL55_03550 PF04552 Sigma-54, DNA binding domain AVL55_03550 PF04963 Sigma-54 factor, core binding domain AVL55_03555 PF00005 ABC transporter AVL55_03555 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVL55_03560 PF03968 OstA-like protein AVL55_03565 PF06835 Lipopolysaccharide-assembly, LptC-related AVL55_03570 PF08282 haloacid dehalogenase-like hydrolase AVL55_03575 PF00571 CBS domain AVL55_03575 PF01380 SIS domain AVL55_03580 PF01699 Sodium/calcium exchanger protein AVL55_03585 PF00005 ABC transporter AVL55_03590 PF02405 AVL55_03590 AVL55_03595 PF02470 AVL55_03595 AVL55_03600 PF05494 Toluene tolerance, Ttg2 AVL55_03605 PF13466 STAS domain AVL55_03610 PF01722 BolA-like protein AVL55_03615 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AVL55_03620 PF13180 PDZ domain AVL55_03620 PF13365 Trypsin-like peptidase domain AVL55_03625 PF00595 PDZ domain (Also known as DHR or GLGF) AVL55_03625 PF13180 PDZ domain AVL55_03625 PF13365 Trypsin-like peptidase domain AVL55_03630 PF06295 AVL55_03630 AVL55_03635 PF03969 AFG1-like ATPase AVL55_03640 PF03062 AVL55_03640 AVL55_03650 PF08840 BAAT / Acyl-CoA thioester hydrolase C terminal AVL55_03655 PF04237 YjbR AVL55_03660 PF12487 AVL55_03660 AVL55_03665 PF02567 Phenazine biosynthesis-like protein AVL55_03670 PF01019 Gamma-glutamyltranspeptidase AVL55_03675 PF00378 Enoyl-CoA hydratase/isomerase family AVL55_03680 PF01694 Rhomboid family AVL55_03685 PF00326 Prolyl oligopeptidase family AVL55_03685 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AVL55_03690 PF00255 Glutathione peroxidase AVL55_03695 PF02525 Flavodoxin-like fold AVL55_03700 PF07452 AVL55_03700 AVL55_03700 PF14344 AVL55_03700 AVL55_03705 PF01053 Cys/Met metabolism PLP-dependent enzyme AVL55_03710 PF01553 Acyltransferase AVL55_03715 PF05742 AVL55_03715 AVL55_03720 PF00155 Aminotransferase class I and II AVL55_03725 PF10459 Peptidase S46 AVL55_03735 PF01709 Transcriptional regulator AVL55_03740 PF01863 Protein of unknown function DUF45 AVL55_03745 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AVL55_03745 PF04851 Type III restriction enzyme, res subunit AVL55_03745 PF11867 AVL55_03745 AVL55_03750 PF13166 AVL55_03750 AVL55_03755 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AVL55_03765 PF01420 Type I restriction modification DNA specificity domain AVL55_03770 PF02384 N-6 DNA Methylase AVL55_03770 PF12161 HsdM N-terminal domain AVL55_03775 PF04471 Restriction endonuclease AVL55_03775 PF14338 AVL55_03775 AVL55_03780 PF08722 TnsA endonuclease N terminal AVL55_03790 PF13401 AAA domain AVL55_03800 PF15978 AVL55_03800 AVL55_03810 PF01906 Putative heavy-metal-binding AVL55_03820 PF05717 AVL55_03820 AVL55_03830 PF01609 Transposase DDE domain AVL55_03830 PF13808 AVL55_03830 AVL55_03840 PF01152 Bacterial-like globin AVL55_03850 PF00563 EAL domain AVL55_03850 PF00990 GGDEF domain AVL55_03865 PF02355 Protein export membrane protein AVL55_03865 PF07549 SecD/SecF GG Motif AVL55_03870 PF00999 Sodium/hydrogen exchanger family AVL55_03870 PF02080 TrkA-C domain AVL55_03880 PF00593 TonB dependent receptor AVL55_03880 PF07715 TonB-dependent Receptor Plug Domain AVL55_03885 PF00892 EamA-like transporter family AVL55_03890 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL55_03895 PF00072 Response regulator receiver domain AVL55_03895 PF00512 His Kinase A (phospho-acceptor) domain AVL55_03895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_03895 PF13426 PAS domain AVL55_03900 PF13458 Periplasmic binding protein AVL55_03905 PF00929 Exonuclease AVL55_03915 PF00438 S-adenosylmethionine synthetase, N-terminal domain AVL55_03915 PF02772 S-adenosylmethionine synthetase, central domain AVL55_03915 PF02773 S-adenosylmethionine synthetase, C-terminal domain AVL55_03920 PF00456 Transketolase, thiamine diphosphate binding domain AVL55_03920 PF02779 Transketolase, pyrimidine binding domain AVL55_03920 PF02780 Transketolase, C-terminal domain AVL55_03925 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL55_03925 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AVL55_03930 PF00162 Phosphoglycerate kinase AVL55_03935 PF00274 Fructose-bisphosphate aldolase class-I AVL55_03940 PF01219 Prokaryotic diacylglycerol kinase AVL55_03945 PF00884 Sulfatase AVL55_03945 PF08019 AVL55_03945 AVL55_03950 PF00072 Response regulator receiver domain AVL55_03950 PF00486 Transcriptional regulatory protein, C terminal AVL55_03955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_03965 PF16576 AVL55_03965 AVL55_03970 PF00873 AcrB/AcrD/AcrF family AVL55_03975 PF02321 Outer membrane efflux protein AVL55_03985 PF00326 Prolyl oligopeptidase family AVL55_03985 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AVL55_03985 PF07676 WD40-like Beta Propeller Repeat AVL55_03990 PF02541 Ppx/GppA phosphatase family AVL55_03995 PF02503 Polyphosphate kinase middle domain AVL55_03995 PF13089 Polyphosphate kinase N-terminal domain AVL55_03995 PF13090 Polyphosphate kinase C-terminal domain AVL55_04000 PF13740 ACT domain AVL55_04005 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_04010 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_04015 PF00005 ABC transporter AVL55_04020 PF01895 PhoU domain AVL55_04025 PF01384 AVL55_04025 AVL55_04030 PF00582 Universal stress protein family AVL55_04035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_04035 PF03466 LysR substrate binding domain AVL55_04045 PF03006 AVL55_04045 AVL55_04055 PF01047 MarR family AVL55_04060 PF02566 OsmC-like protein AVL55_04065 PF01433 Peptidase family M1 AVL55_04065 PF09127 Leukotriene A4 hydrolase, C-terminal AVL55_04070 PF00578 AhpC/TSA family AVL55_04075 PF01205 Uncharacterized protein family UPF0029 AVL55_04075 PF09186 Domain of unknown function (DUF1949) AVL55_04080 PF12514 AVL55_04080 AVL55_04085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_04085 PF08447 PAS fold AVL55_04090 PF12576 AVL55_04090 AVL55_04095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_04095 PF03466 LysR substrate binding domain AVL55_04100 PF00248 Aldo/keto reductase family AVL55_04105 PF03928 Domain of unknown function (DUF336) AVL55_04110 PF00128 Alpha amylase, catalytic domain AVL55_04115 PF00149 Calcineurin-like phosphoesterase AVL55_04115 PF12320 Type 5 capsule protein repressor C-terminal domain AVL55_04120 PF13476 AAA domain AVL55_04120 PF13558 Putative exonuclease SbcCD, C subunit AVL55_04125 PF03572 Peptidase family S41 AVL55_04130 PF00375 Sodium:dicarboxylate symporter family AVL55_04135 PF00491 Arginase family AVL55_04140 PF01979 Amidohydrolase family AVL55_04145 PF00392 Bacterial regulatory proteins, gntR family AVL55_04145 PF07702 UTRA domain AVL55_04150 PF01175 Urocanase AVL55_04150 PF17391 AVL55_04150 AVL55_04150 PF17392 AVL55_04150 AVL55_04155 PF00221 Aromatic amino acid lyase AVL55_04160 PF05981 AVL55_04160 AVL55_04165 PF06629 AVL55_04165 AVL55_04170 PF01548 AVL55_04170 AVL55_04170 PF02371 AVL55_04170 AVL55_04175 PF01869 BadF/BadG/BcrA/BcrD ATPase family AVL55_04180 PF01979 Amidohydrolase family AVL55_04190 PF00005 ABC transporter AVL55_04190 PF12848 ABC transporter AVL55_04200 PF13529 Peptidase_C39 like family AVL55_04205 PF00924 Mechanosensitive ion channel AVL55_04210 PF13505 Outer membrane protein beta-barrel domain AVL55_04215 PF00892 EamA-like transporter family AVL55_04220 PF00593 TonB dependent receptor AVL55_04220 PF07715 TonB-dependent Receptor Plug Domain AVL55_04225 PF13437 HlyD family secretion protein AVL55_04225 PF13533 Biotin-lipoyl like AVL55_04230 PF00005 ABC transporter AVL55_04230 PF12698 ABC-2 family transporter protein AVL55_04235 PF12698 ABC-2 family transporter protein AVL55_04240 PF07690 Major Facilitator Superfamily AVL55_04245 PF03693 Uncharacterised protein family (UPF0156) AVL55_04270 PF05729 NACHT domain AVL55_04275 PF00589 Phage integrase family AVL55_04280 PF00665 Integrase core domain AVL55_04295 PF03160 Calx-beta domain AVL55_04305 PF00034 Cytochrome c AVL55_04305 PF03150 Di-haem cytochrome c peroxidase AVL55_04325 PF03788 AVL55_04325 AVL55_04330 PF04172 AVL55_04330 AVL55_04335 PF00072 Response regulator receiver domain AVL55_04340 PF08448 PAS fold AVL55_04345 PF07603 AVL55_04345 AVL55_04350 PF07603 AVL55_04350 AVL55_04355 PF11101 AVL55_04355 AVL55_04360 PF04055 Radical SAM superfamily AVL55_04360 PF06969 HemN C-terminal domain AVL55_04365 PF01725 Ham1 family AVL55_04370 PF00270 DEAD/DEAH box helicase AVL55_04370 PF00271 Helicase conserved C-terminal domain AVL55_04385 PF01743 Poly A polymerase head domain AVL55_04385 PF12627 Probable RNA and SrmB- binding site of polymerase A AVL55_04390 PF13401 AAA domain AVL55_04395 PF11871 AVL55_04395 AVL55_04395 PF16537 AVL55_04395 AVL55_04400 PF11871 AVL55_04400 AVL55_04400 PF13487 HD domain AVL55_04405 PF00694 Aconitase C-terminal domain AVL55_04410 PF00330 Aconitase family (aconitate hydratase) AVL55_04415 PF00180 Isocitrate/isopropylmalate dehydrogenase AVL55_04420 PF00682 HMGL-like AVL55_04420 PF08502 LeuA allosteric (dimerisation) domain AVL55_04430 PF00113 Enolase, C-terminal TIM barrel domain AVL55_04430 PF03952 Enolase, N-terminal domain AVL55_04435 PF00117 Glutamine amidotransferase class-I AVL55_04435 PF06418 CTP synthase N-terminus AVL55_04440 PF00488 MutS domain V AVL55_04440 PF01624 MutS domain I AVL55_04440 PF05188 MutS domain II AVL55_04440 PF05190 MutS family domain IV AVL55_04440 PF05192 MutS domain III AVL55_04445 PF02464 Competence-damaged protein AVL55_04450 PF00154 recA bacterial DNA recombination protein AVL55_04455 PF00005 ABC transporter AVL55_04460 PF12698 ABC-2 family transporter protein AVL55_04465 PF01312 FlhB HrpN YscU SpaS Family AVL55_04475 PF00005 ABC transporter AVL55_04480 PF03379 AVL55_04480 AVL55_04485 PF01578 AVL55_04485 AVL55_04490 PF04995 AVL55_04490 AVL55_04495 PF03100 CcmE AVL55_04500 PF01578 AVL55_04500 AVL55_04500 PF16327 AVL55_04500 AVL55_04505 PF08534 Redoxin AVL55_04510 PF03918 Cytochrome C biogenesis protein AVL55_04520 PF04333 AVL55_04520 AVL55_04525 PF00665 Integrase core domain AVL55_04535 PF16363 AVL55_04535 AVL55_04545 PF00854 POT family AVL55_04555 PF00005 ABC transporter AVL55_04560 PF01061 AVL55_04560 AVL55_04565 PF02563 Polysaccharide biosynthesis/export protein AVL55_04575 PF00953 Glycosyl transferase family 4 AVL55_04580 PF00535 Glycosyl transferase family 2 AVL55_04585 PF00535 Glycosyl transferase family 2 AVL55_04590 PF00483 Nucleotidyl transferase AVL55_04595 PF12836 Helix-hairpin-helix motif AVL55_04600 PF00180 Isocitrate/isopropylmalate dehydrogenase AVL55_04610 PF11399 AVL55_04610 AVL55_04615 PF03641 Possible lysine decarboxylase AVL55_04615 PF11892 Domain of unknown function (DUF3412) AVL55_04615 PF14793 Domain of unknown function (DUF4478) AVL55_04620 PF00990 GGDEF domain AVL55_04625 PF14489 QueF-like protein AVL55_04625 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AVL55_04630 PF07348 Syd protein (SUKH-2) AVL55_04640 PF11399 AVL55_04640 AVL55_04645 PF00583 Acetyltransferase (GNAT) family AVL55_04650 PF11743 AVL55_04650 AVL55_04655 PF12069 AVL55_04655 AVL55_04660 PF04287 tRNA pseudouridine synthase C AVL55_04665 PF00849 RNA pseudouridylate synthase AVL55_04670 PF00258 Flavodoxin AVL55_04675 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_04675 PF14602 Hexapeptide repeat of succinyl-transferase AVL55_04675 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AVL55_04680 PF01909 Nucleotidyltransferase domain AVL55_04680 PF01966 HD domain AVL55_04680 PF08335 GlnD PII-uridylyltransferase AVL55_04685 PF00557 Metallopeptidase family M24 AVL55_04690 PF00318 Ribosomal protein S2 AVL55_04695 PF00889 Elongation factor TS AVL55_04700 PF00696 Amino acid kinase family AVL55_04705 PF01765 Ribosome recycling factor AVL55_04710 PF01255 Putative undecaprenyl diphosphate synthase AVL55_04715 PF01148 Cytidylyltransferase family AVL55_04720 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AVL55_04720 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AVL55_04720 PF13288 DXP reductoisomerase C-terminal domain AVL55_04725 PF02163 Peptidase family M50 AVL55_04725 PF13180 PDZ domain AVL55_04730 PF01103 Surface antigen AVL55_04730 PF07244 Surface antigen variable number repeat AVL55_04735 PF03938 Outer membrane protein (OmpH-like) AVL55_04740 PF07977 FabA-like domain AVL55_04745 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_04745 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AVL55_04750 PF02684 AVL55_04750 AVL55_04755 PF01351 Ribonuclease HII AVL55_04760 PF02811 PHP domain AVL55_04760 PF07733 Bacterial DNA polymerase III alpha subunit AVL55_04760 PF14579 Helix-hairpin-helix motif AVL55_04765 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AVL55_04770 PF01171 PP-loop family AVL55_04770 PF09179 TilS substrate binding domain AVL55_04770 PF11734 TilS substrate C-terminal domain AVL55_04775 PF00990 GGDEF domain AVL55_04780 PF00999 Sodium/hydrogen exchanger family AVL55_04780 PF02080 TrkA-C domain AVL55_04780 PF02254 TrkA-N domain AVL55_04790 PF14437 AVL55_04790 AVL55_04795 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL55_04795 PF01464 Transglycosylase SLT domain AVL55_04800 PF02769 AIR synthase related protein, C-terminal domain AVL55_04800 PF13507 CobB/CobQ-like glutamine amidotransferase domain AVL55_04805 PF01713 Smr domain AVL55_04815 PF16538 AVL55_04815 AVL55_04815 PF16539 AVL55_04815 AVL55_04815 PF16548 AVL55_04815 AVL55_04820 PF02169 LPP20 lipoprotein AVL55_04825 PF05130 FlgN protein AVL55_04830 PF04316 Anti-sigma-28 factor, FlgM AVL55_04835 PF13144 SAF-like AVL55_04840 PF00072 Response regulator receiver domain AVL55_04840 PF01584 CheW-like domain AVL55_04845 PF01739 CheR methyltransferase, SAM binding domain AVL55_04845 PF03705 CheR methyltransferase, all-alpha domain AVL55_04850 PF00460 Flagella basal body rod protein AVL55_04855 PF00460 Flagella basal body rod protein AVL55_04855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVL55_04860 PF03963 AVL55_04860 AVL55_04860 PF13860 FlgD Ig-like domain AVL55_04860 PF13861 FlgD Tudor-like domain AVL55_04865 PF00460 Flagella basal body rod protein AVL55_04865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVL55_04865 PF07559 Flagellar basal body protein FlaE AVL55_04870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVL55_04875 PF00460 Flagella basal body rod protein AVL55_04875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVL55_04880 PF02107 AVL55_04880 AVL55_04885 PF02119 AVL55_04885 AVL55_04890 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AVL55_04890 PF10135 AVL55_04890 AVL55_04895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVL55_04900 PF00669 Bacterial flagellin N-terminal helical region AVL55_04900 PF00700 Bacterial flagellin C-terminal helical region AVL55_04910 PF00669 Bacterial flagellin N-terminal helical region AVL55_04910 PF00700 Bacterial flagellin C-terminal helical region AVL55_04915 PF00669 Bacterial flagellin N-terminal helical region AVL55_04915 PF00700 Bacterial flagellin C-terminal helical region AVL55_04920 PF00669 Bacterial flagellin N-terminal helical region AVL55_04920 PF00700 Bacterial flagellin C-terminal helical region AVL55_04925 PF03646 FlaG protein AVL55_04930 PF02465 AVL55_04930 AVL55_04930 PF07195 AVL55_04930 AVL55_04930 PF07196 Flagellin hook IN motif AVL55_04935 PF02561 Flagellar protein FliS AVL55_04945 PF02719 Polysaccharide biosynthesis protein AVL55_04950 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AVL55_04955 PF02348 Cytidylyltransferase AVL55_04960 PF03102 NeuB family AVL55_04960 PF08666 SAF domain AVL55_04970 PF13302 Acetyltransferase (GNAT) domain AVL55_04980 PF13561 Enoyl-(Acyl carrier protein) reductase AVL55_04985 PF00501 AMP-binding enzyme AVL55_04990 PF04443 AVL55_04990 AVL55_04995 PF05893 Acyl-CoA reductase (LuxC) AVL55_05000 PF01973 AVL55_05000 AVL55_05005 PF00884 Sulfatase AVL55_05010 PF04991 AVL55_05010 AVL55_05020 PF00535 Glycosyl transferase family 2 AVL55_05025 PF13692 Glycosyl transferases group 1 AVL55_05030 PF02350 UDP-N-acetylglucosamine 2-epimerase AVL55_05035 PF01370 NAD dependent epimerase/dehydratase family AVL55_05040 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AVL55_05045 PF00733 Asparagine synthase AVL55_05045 PF13537 Glutamine amidotransferase domain AVL55_05050 PF13480 Acetyltransferase (GNAT) domain AVL55_05055 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AVL55_05060 PF13469 Sulfotransferase family AVL55_05070 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AVL55_05070 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AVL55_05070 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AVL55_05075 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVL55_05075 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AVL55_05080 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_05085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AVL55_05090 PF01467 Cytidylyltransferase AVL55_05095 PF00669 Bacterial flagellin N-terminal helical region AVL55_05095 PF00700 Bacterial flagellin C-terminal helical region AVL55_05100 PF00158 Sigma-54 interaction domain AVL55_05100 PF02954 Bacterial regulatory protein, Fis family AVL55_05100 PF06490 AVL55_05100 AVL55_05105 PF00512 His Kinase A (phospho-acceptor) domain AVL55_05105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_05105 PF13188 PAS domain AVL55_05110 PF00072 Response regulator receiver domain AVL55_05110 PF00158 Sigma-54 interaction domain AVL55_05110 PF02954 Bacterial regulatory protein, Fis family AVL55_05115 PF02049 AVL55_05115 AVL55_05120 PF01514 Secretory protein of YscJ/FliF family AVL55_05120 PF08345 AVL55_05120 AVL55_05125 PF01706 FliG C-terminal domain AVL55_05125 PF14841 FliG middle domain AVL55_05125 PF14842 FliG N-terminal domain AVL55_05130 PF02108 AVL55_05130 AVL55_05135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVL55_05140 PF02050 Flagellar FliJ protein AVL55_05145 PF02120 Flagellar hook-length control protein FliK AVL55_05150 PF03748 AVL55_05150 AVL55_05155 PF01052 Surface presentation of antigens (SPOA) AVL55_05155 PF02154 Flagellar motor switch protein FliM AVL55_05160 PF01052 Surface presentation of antigens (SPOA) AVL55_05165 PF04347 AVL55_05165 AVL55_05170 PF00813 AVL55_05170 AVL55_05175 PF01313 AVL55_05175 AVL55_05180 PF01311 AVL55_05180 AVL55_05185 PF01312 FlhB HrpN YscU SpaS Family AVL55_05190 PF00771 FHIPEP family AVL55_05195 PF00448 SRP54-type protein, GTPase domain AVL55_05200 PF10609 ParA/MinD ATPase like AVL55_05205 PF04539 Sigma-70 region 3 AVL55_05205 PF04542 Sigma-70 region 2 AVL55_05205 PF04545 Sigma-70, region 4 AVL55_05210 PF00072 Response regulator receiver domain AVL55_05215 PF04344 Chemotaxis phosphatase, CheZ AVL55_05220 PF01584 CheW-like domain AVL55_05220 PF01627 Hpt domain AVL55_05220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_05220 PF02895 Signal transducing histidine kinase, homodimeric domain AVL55_05225 PF00072 Response regulator receiver domain AVL55_05225 PF01339 CheB methylesterase AVL55_05230 PF13614 AAA domain AVL55_05235 PF01584 CheW-like domain AVL55_05240 PF01584 CheW-like domain AVL55_05245 PF10975 AVL55_05245 AVL55_05250 PF04204 Homoserine O-succinyltransferase AVL55_05255 PF02574 Homocysteine S-methyltransferase AVL55_05260 PF00809 Pterin binding enzyme AVL55_05260 PF02310 B12 binding domain AVL55_05260 PF02607 B12 binding domain AVL55_05260 PF02965 Vitamin B12 dependent methionine synthase, activation domain AVL55_05265 PF06080 AVL55_05265 AVL55_05270 PF06865 Protein of unknown function (DUF1255) AVL55_05275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_05275 PF00672 HAMP domain AVL55_05275 PF02743 Cache domain AVL55_05280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_05280 PF03466 LysR substrate binding domain AVL55_05285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_05285 PF03466 LysR substrate binding domain AVL55_05290 PF00484 Carbonic anhydrase AVL55_05295 PF00916 AVL55_05295 AVL55_05295 PF01740 STAS domain AVL55_05300 PF00593 TonB dependent receptor AVL55_05300 PF07715 TonB-dependent Receptor Plug Domain AVL55_05305 PF00440 Bacterial regulatory proteins, tetR family AVL55_05305 PF13977 Bacterial transcriptional repressor AVL55_05310 PF01431 Peptidase family M13 AVL55_05310 PF05649 Peptidase family M13 AVL55_05315 PF04339 AVL55_05315 AVL55_05320 PF02631 RecX family AVL55_05325 PF01411 tRNA synthetases class II (A) AVL55_05325 PF02272 DHHA1 domain AVL55_05325 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AVL55_05330 PF02599 Global regulator protein family AVL55_05355 PF04277 AVL55_05355 AVL55_05360 PF00364 Biotin-requiring enzyme AVL55_05360 PF00682 HMGL-like AVL55_05360 PF02436 Conserved carboxylase domain AVL55_05365 PF03977 AVL55_05365 AVL55_05370 PF00005 ABC transporter AVL55_05375 PF00005 ABC transporter AVL55_05375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVL55_05380 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_05380 PF12911 AVL55_05380 AVL55_05385 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_05390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVL55_05395 PF00158 Sigma-54 interaction domain AVL55_05395 PF02954 Bacterial regulatory protein, Fis family AVL55_05400 PF04012 AVL55_05400 AVL55_05405 PF06667 AVL55_05405 AVL55_05410 PF04024 AVL55_05410 AVL55_05415 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AVL55_05420 PF00158 Sigma-54 interaction domain AVL55_05420 PF00989 PAS fold AVL55_05425 PF01557 Fumarylacetoacetate (FAA) hydrolase family AVL55_05430 PF13417 Glutathione S-transferase, N-terminal domain AVL55_05435 PF01037 AsnC family AVL55_05435 PF13412 Winged helix-turn-helix DNA-binding AVL55_05440 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AVL55_05440 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AVL55_05450 PF10719 AVL55_05450 AVL55_05455 PF03301 Tryptophan 2,3-dioxygenase AVL55_05460 PF00593 TonB dependent receptor AVL55_05460 PF07715 TonB-dependent Receptor Plug Domain AVL55_05470 PF11932 AVL55_05470 AVL55_05475 PF01618 AVL55_05475 AVL55_05480 PF01618 AVL55_05480 AVL55_05485 PF02472 Biopolymer transport protein ExbD/TolR AVL55_05490 PF03544 Gram-negative bacterial TonB protein C-terminal AVL55_05495 PF13432 Tetratricopeptide repeat AVL55_05500 PF05127 Helicase AVL55_05500 PF08351 Domain of unknown function (DUF1726) AVL55_05500 PF13718 GNAT acetyltransferase 2 AVL55_05505 PF03061 Thioesterase superfamily AVL55_05510 PF00593 TonB dependent receptor AVL55_05510 PF07715 TonB-dependent Receptor Plug Domain AVL55_05515 PF07615 YKOF-related Family AVL55_05520 PF04973 AVL55_05520 AVL55_05525 PF01636 Phosphotransferase enzyme family AVL55_05540 PF00583 Acetyltransferase (GNAT) family AVL55_05545 PF00892 EamA-like transporter family AVL55_05550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_05550 PF03466 LysR substrate binding domain AVL55_05555 PF07690 Major Facilitator Superfamily AVL55_05560 PF00296 Luciferase-like monooxygenase AVL55_05565 PF00248 Aldo/keto reductase family AVL55_05570 PF11168 AVL55_05570 AVL55_05575 PF16576 AVL55_05575 AVL55_05580 PF01047 MarR family AVL55_05585 PF11459 AVL55_05585 AVL55_05585 PF17194 AVL55_05585 AVL55_05590 PF08843 Nucleotidyl transferase of unknown function (DUF1814) AVL55_05605 PF01381 Helix-turn-helix AVL55_05610 PF07804 HipA-like C-terminal domain AVL55_05610 PF13657 HipA N-terminal domain AVL55_05620 PF00589 Phage integrase family AVL55_05620 PF13356 Domain of unknown function (DUF4102) AVL55_05640 PF01699 Sodium/calcium exchanger protein AVL55_05645 PF00924 Mechanosensitive ion channel AVL55_05650 PF00817 impB/mucB/samB family AVL55_05650 PF11798 IMS family HHH motif AVL55_05650 PF11799 impB/mucB/samB family C-terminal domain AVL55_05650 PF13438 AVL55_05650 AVL55_05655 PF13411 MerR HTH family regulatory protein AVL55_05660 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVL55_05660 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_05665 PF03203 AVL55_05665 AVL55_05670 PF00403 Heavy-metal-associated domain AVL55_05675 PF02411 AVL55_05675 AVL55_05680 PF13411 MerR HTH family regulatory protein AVL55_05685 PF00239 Resolvase, N terminal domain AVL55_05685 PF02796 Helix-turn-helix domain of resolvase AVL55_05705 PF00589 Phage integrase family AVL55_05710 PF00817 impB/mucB/samB family AVL55_05715 PF00717 Peptidase S24-like AVL55_05720 PF00929 Exonuclease AVL55_05730 PF13280 AVL55_05730 AVL55_05735 PF02384 N-6 DNA Methylase AVL55_05735 PF12161 HsdM N-terminal domain AVL55_05740 PF01420 Type I restriction modification DNA specificity domain AVL55_05745 PF14088 AVL55_05745 AVL55_05750 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AVL55_05750 PF04851 Type III restriction enzyme, res subunit AVL55_05765 PF04307 AVL55_05765 AVL55_05770 PF13391 AVL55_05770 AVL55_05785 PF07514 Putative helicase AVL55_05790 PF10412 Type IV secretion-system coupling protein DNA-binding domain AVL55_05790 PF12696 TraM recognition site of TraD and TraG AVL55_05800 PF14348 AVL55_05800 AVL55_05815 PF08238 Sel1 repeat AVL55_05835 PF07178 AVL55_05835 AVL55_05840 PF05309 AVL55_05840 AVL55_05845 PF06586 AVL55_05845 AVL55_05850 PF03743 Bacterial conjugation TrbI-like protein AVL55_05855 PF09676 AVL55_05855 AVL55_05865 PF00122 E1-E2 ATPase AVL55_05865 PF00403 Heavy-metal-associated domain AVL55_05865 PF00702 haloacid dehalogenase-like hydrolase AVL55_05870 PF00376 MerR family regulatory protein AVL55_05870 PF09278 MerR, DNA binding AVL55_05885 PF13411 MerR HTH family regulatory protein AVL55_05890 PF01022 Bacterial regulatory protein, arsR family AVL55_05900 PF01545 Cation efflux family AVL55_05905 PF01022 Bacterial regulatory protein, arsR family AVL55_05910 PF00122 E1-E2 ATPase AVL55_05910 PF00403 Heavy-metal-associated domain AVL55_05910 PF00702 haloacid dehalogenase-like hydrolase AVL55_05920 PF00873 AcrB/AcrD/AcrF family AVL55_05925 PF02321 Outer membrane efflux protein AVL55_05930 PF00873 AcrB/AcrD/AcrF family AVL55_05935 PF00873 AcrB/AcrD/AcrF family AVL55_05945 PF05717 AVL55_05945 AVL55_05950 PF10411 Disulfide bond isomerase protein N-terminus AVL55_05950 PF13098 Thioredoxin-like domain AVL55_05955 PF11130 AVL55_05955 AVL55_05955 PF12846 AAA-like domain AVL55_05965 PF10502 Signal peptidase, peptidase S26 AVL55_05970 PF09673 AVL55_05970 AVL55_05975 PF06834 AVL55_05975 AVL55_05980 PF06986 AVL55_05980 AVL55_05985 PF13245 Part of AAA domain AVL55_05985 PF13361 UvrD-like helicase C-terminal domain AVL55_05990 PF11398 Protein of unknown function (DUF2813) AVL55_05990 PF13304 AAA domain AVL55_05995 PF00082 Subtilase family AVL55_06000 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_06020 PF00436 Single-strand binding protein family AVL55_06025 PF03837 AVL55_06025 AVL55_06030 PF09588 YqaJ-like viral recombinase domain AVL55_06035 PF07728 AAA domain (dynein-related subfamily) AVL55_06035 PF08406 AVL55_06035 AVL55_06045 PF11348 AVL55_06045 AVL55_06055 PF00092 von Willebrand factor type A domain AVL55_06055 PF06213 AVL55_06055 AVL55_06060 PF04002 RadC-like JAB domain AVL55_06070 PF08273 Zinc-binding domain of primase-helicase AVL55_06070 PF13362 Toprim domain AVL55_06080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_06080 PF03466 LysR substrate binding domain AVL55_06085 PF02417 AVL55_06085 AVL55_06090 PF13728 F plasmid transfer operon protein AVL55_06095 PF06122 AVL55_06095 AVL55_06100 PF07916 AVL55_06100 AVL55_06110 PF05280 Flagellar transcriptional activator (FlhC) AVL55_06115 PF05247 Flagellar transcriptional activator (FlhD) AVL55_06120 PF01464 Transglycosylase SLT domain AVL55_06135 PF15943 AVL55_06135 AVL55_06140 PF00717 Peptidase S24-like AVL55_06140 PF01381 Helix-turn-helix AVL55_06145 PF00009 Elongation factor Tu GTP binding domain AVL55_06145 PF03144 Elongation factor Tu domain 2 AVL55_06145 PF16658 AVL55_06145 AVL55_06150 PF00750 tRNA synthetases class I (R) AVL55_06150 PF03485 Arginyl tRNA synthetase N terminal domain AVL55_06150 PF05746 DALR anticodon binding domain AVL55_06155 PF03358 NADPH-dependent FMN reductase AVL55_06160 PF13469 Sulfotransferase family AVL55_06160 PF14559 Tetratricopeptide repeat AVL55_06165 PF00805 Pentapeptide repeats (8 copies) AVL55_06165 PF13599 Pentapeptide repeats (9 copies) AVL55_06175 PF00072 Response regulator receiver domain AVL55_06175 PF00196 Bacterial regulatory proteins, luxR family AVL55_06180 PF00563 EAL domain AVL55_06180 PF00990 GGDEF domain AVL55_06180 PF07494 Two component regulator propeller AVL55_06180 PF08447 PAS fold AVL55_06185 PF11199 AVL55_06185 AVL55_06190 PF00291 Pyridoxal-phosphate dependent enzyme AVL55_06195 PF03372 Endonuclease/Exonuclease/phosphatase family AVL55_06200 PF00990 GGDEF domain AVL55_06200 PF07494 Two component regulator propeller AVL55_06200 PF07495 Y_Y_Y domain AVL55_06205 PF04224 AVL55_06205 AVL55_06220 PF09945 AVL55_06220 AVL55_06225 PF00487 AVL55_06225 AVL55_06230 PF00175 Oxidoreductase NAD-binding domain AVL55_06230 PF00970 Oxidoreductase FAD-binding domain AVL55_06235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL55_06245 PF00472 RF-1 domain AVL55_06245 PF03462 PCRF domain AVL55_06250 PF00152 tRNA synthetases class II (D, K and N) AVL55_06250 PF01336 OB-fold nucleic acid binding domain AVL55_06255 PF02558 Ketopantoate reductase PanE/ApbA AVL55_06255 PF08546 Ketopantoate reductase PanE/ApbA C terminal AVL55_06260 PF00849 RNA pseudouridylate synthase AVL55_06265 PF01627 Hpt domain AVL55_06270 PF00675 Insulinase (Peptidase family M16) AVL55_06270 PF05193 Peptidase M16 inactive domain AVL55_06275 PF04262 Glutamate-cysteine ligase AVL55_06295 PF01713 Smr domain AVL55_06300 PF05175 Methyltransferase small domain AVL55_06305 PF01264 Chorismate synthase AVL55_06310 PF12832 MFS_1 like family AVL55_06315 PF04293 AVL55_06315 AVL55_06320 PF04285 AVL55_06320 AVL55_06325 PF06798 AVL55_06325 AVL55_06325 PF08298 PrkA AAA domain AVL55_06330 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AVL55_06330 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AVL55_06335 PF00462 Glutaredoxin AVL55_06340 PF00593 TonB dependent receptor AVL55_06340 PF07715 TonB-dependent Receptor Plug Domain AVL55_06345 PF04542 Sigma-70 region 2 AVL55_06345 PF08281 Sigma-70, region 4 AVL55_06350 PF04773 FecR protein AVL55_06350 PF16344 AVL55_06350 AVL55_06355 PF00593 TonB dependent receptor AVL55_06355 PF07715 TonB-dependent Receptor Plug Domain AVL55_06360 PF04324 BFD-like [2Fe-2S] binding domain AVL55_06365 PF00578 AhpC/TSA family AVL55_06365 PF10417 C-terminal domain of 1-Cys peroxiredoxin AVL55_06370 PF00929 Exonuclease AVL55_06375 PF00691 OmpA family AVL55_06380 PF03009 Glycerophosphoryl diester phosphodiesterase family AVL55_06385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL55_06390 PF00313 'Cold-shock' DNA-binding domain AVL55_06400 PF02225 PA domain AVL55_06400 PF04389 Peptidase family M28 AVL55_06405 PF00730 HhH-GPD superfamily base excision DNA repair protein AVL55_06410 PF02508 AVL55_06410 AVL55_06415 PF04205 FMN-binding domain AVL55_06420 PF03116 AVL55_06420 AVL55_06425 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AVL55_06425 PF10531 SLBB domain AVL55_06425 PF12838 4Fe-4S dicluster domain AVL55_06425 PF13375 RnfC Barrel sandwich hybrid domain AVL55_06430 PF04060 Putative Fe-S cluster AVL55_06430 PF14697 4Fe-4S dicluster domain AVL55_06435 PF02508 AVL55_06435 AVL55_06450 PF01554 MatE AVL55_06455 PF00271 Helicase conserved C-terminal domain AVL55_06455 PF02151 UvrB/uvrC motif AVL55_06455 PF04851 Type III restriction enzyme, res subunit AVL55_06455 PF12344 Ultra-violet resistance protein B AVL55_06460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_06460 PF03466 LysR substrate binding domain AVL55_06465 PF06508 Queuosine biosynthesis protein QueC AVL55_06470 PF04055 Radical SAM superfamily AVL55_06470 PF13394 4Fe-4S single cluster domain AVL55_06480 PF00733 Asparagine synthase AVL55_06480 PF13537 Glutamine amidotransferase domain AVL55_06485 PF02225 PA domain AVL55_06485 PF04389 Peptidase family M28 AVL55_06490 PF11227 AVL55_06490 AVL55_06495 PF04893 AVL55_06495 AVL55_06500 PF02080 TrkA-C domain AVL55_06500 PF03600 Citrate transporter AVL55_06505 PF00009 Elongation factor Tu GTP binding domain AVL55_06510 PF00459 Inositol monophosphatase family AVL55_06515 PF01583 Adenylylsulphate kinase AVL55_06520 PF01507 Phosphoadenosine phosphosulfate reductase family AVL55_06525 PF00474 Sodium:solute symporter family AVL55_06535 PF11859 AVL55_06535 AVL55_06540 PF04542 Sigma-70 region 2 AVL55_06540 PF08281 Sigma-70, region 4 AVL55_06545 PF05960 Bacterial protein of unknown function (DUF885) AVL55_06550 PF13584 AVL55_06550 AVL55_06555 PF07719 Tetratricopeptide repeat AVL55_06555 PF13519 von Willebrand factor type A domain AVL55_06560 PF00092 von Willebrand factor type A domain AVL55_06565 PF14316 AVL55_06565 AVL55_06570 PF01882 AVL55_06570 AVL55_06575 PF07726 ATPase family associated with various cellular activities (AAA) AVL55_06580 PF00108 Thiolase, N-terminal domain AVL55_06580 PF02803 Thiolase, C-terminal domain AVL55_06585 PF00378 Enoyl-CoA hydratase/isomerase family AVL55_06585 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVL55_06585 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVL55_06600 PF00563 EAL domain AVL55_06600 PF00990 GGDEF domain AVL55_06600 PF07494 Two component regulator propeller AVL55_06600 PF07495 Y_Y_Y domain AVL55_06600 PF08447 PAS fold AVL55_06600 PF13426 PAS domain AVL55_06605 PF00675 Insulinase (Peptidase family M16) AVL55_06605 PF05193 Peptidase M16 inactive domain AVL55_06605 PF16187 AVL55_06605 AVL55_06610 PF00300 Histidine phosphatase superfamily (branch 1) AVL55_06620 PF00571 CBS domain AVL55_06620 PF01595 AVL55_06620 AVL55_06620 PF03471 Transporter associated domain AVL55_06625 PF01578 AVL55_06625 AVL55_06630 PF00448 SRP54-type protein, GTPase domain AVL55_06630 PF02881 SRP54-type protein, helical bundle domain AVL55_06630 PF02978 Signal peptide binding domain AVL55_06640 PF12128 AVL55_06640 AVL55_06655 PF05099 Tellurite resistance protein TerB AVL55_06660 PF12146 Putative lysophospholipase AVL55_06665 PF00873 AcrB/AcrD/AcrF family AVL55_06670 PF16576 AVL55_06670 AVL55_06675 PF00005 ABC transporter AVL55_06675 PF00664 ABC transporter transmembrane region AVL55_06680 PF13743 Thioredoxin AVL55_06690 PF00886 Ribosomal protein S16 AVL55_06695 PF01782 RimM N-terminal domain AVL55_06695 PF05239 PRC-barrel domain AVL55_06700 PF01746 tRNA (Guanine-1)-methyltransferase AVL55_06705 PF01245 Ribosomal protein L19 AVL55_06710 PF03458 AVL55_06710 AVL55_06715 PF00378 Enoyl-CoA hydratase/isomerase family AVL55_06720 PF00793 DAHP synthetase I family AVL55_06725 PF01817 Chorismate mutase type II AVL55_06725 PF02153 Prephenate dehydrogenase AVL55_06730 PF00800 Prephenate dehydratase AVL55_06730 PF01817 Chorismate mutase type II AVL55_06735 PF00072 Response regulator receiver domain AVL55_06740 PF01253 Translation initiation factor SUI1 AVL55_06745 PF13466 STAS domain AVL55_06750 PF00072 Response regulator receiver domain AVL55_06750 PF07228 Stage II sporulation protein E (SpoIIE) AVL55_06755 PF05099 Tellurite resistance protein TerB AVL55_06760 PF00563 EAL domain AVL55_06760 PF00990 GGDEF domain AVL55_06765 PF13202 EF hand AVL55_06770 PF00512 His Kinase A (phospho-acceptor) domain AVL55_06770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_06780 PF00072 Response regulator receiver domain AVL55_06780 PF00158 Sigma-54 interaction domain AVL55_06785 PF01590 GAF domain AVL55_06790 PF01904 Protein of unknown function DUF72 AVL55_06795 PF00152 tRNA synthetases class II (D, K and N) AVL55_06795 PF01336 OB-fold nucleic acid binding domain AVL55_06795 PF02938 GAD domain AVL55_06800 PF00293 NUDIX domain AVL55_06805 PF02075 Crossover junction endodeoxyribonuclease RuvC AVL55_06810 PF01330 RuvA N terminal domain AVL55_06810 PF07499 RuvA, C-terminal domain AVL55_06810 PF14520 Helix-hairpin-helix domain AVL55_06815 PF05491 Holliday junction DNA helicase ruvB C-terminus AVL55_06815 PF05496 Holliday junction DNA helicase ruvB N-terminus AVL55_06820 PF03061 Thioesterase superfamily AVL55_06825 PF01618 AVL55_06825 AVL55_06830 PF02472 Biopolymer transport protein ExbD/TolR AVL55_06835 PF06519 TolA C-terminal AVL55_06840 PF04052 TolB amino-terminal domain AVL55_06840 PF07676 WD40-like Beta Propeller Repeat AVL55_06845 PF00691 OmpA family AVL55_06850 PF13174 Tetratricopeptide repeat AVL55_06850 PF13432 Tetratricopeptide repeat AVL55_06850 PF16331 AVL55_06850 AVL55_06865 PF02445 Quinolinate synthetase A protein AVL55_06880 PF01734 Patatin-like phospholipase AVL55_06885 PF02558 Ketopantoate reductase PanE/ApbA AVL55_06885 PF08546 Ketopantoate reductase PanE/ApbA C terminal AVL55_06890 PF07396 Phosphate-selective porin O and P AVL55_06900 PF01797 Transposase IS200 like AVL55_06915 PF01118 Semialdehyde dehydrogenase, NAD binding domain AVL55_06915 PF02774 Semialdehyde dehydrogenase, dimerisation domain AVL55_06920 PF01292 Prokaryotic cytochrome b561 AVL55_06930 PF01863 Protein of unknown function DUF45 AVL55_06935 PF00571 CBS domain AVL55_06940 PF00873 AcrB/AcrD/AcrF family AVL55_06945 PF13437 HlyD family secretion protein AVL55_06950 PF00440 Bacterial regulatory proteins, tetR family AVL55_06950 PF14246 AefR-like transcriptional repressor, C-terminal region AVL55_06955 PF00593 TonB dependent receptor AVL55_06955 PF07715 TonB-dependent Receptor Plug Domain AVL55_06960 PF00583 Acetyltransferase (GNAT) family AVL55_06965 PF00873 AcrB/AcrD/AcrF family AVL55_06970 PF13437 HlyD family secretion protein AVL55_06970 PF13533 Biotin-lipoyl like AVL55_06975 PF00990 GGDEF domain AVL55_06980 PF03886 Protein of unknown function (DUF330) AVL55_06985 PF02470 AVL55_06985 AVL55_06990 PF04403 AVL55_06990 AVL55_07000 PF00152 tRNA synthetases class II (D, K and N) AVL55_07000 PF01336 OB-fold nucleic acid binding domain AVL55_07010 PF01699 Sodium/calcium exchanger protein AVL55_07015 PF08443 RimK-like ATP-grasp domain AVL55_07015 PF14401 AVL55_07015 AVL55_07020 PF00583 Acetyltransferase (GNAT) family AVL55_07020 PF11814 AVL55_07020 AVL55_07030 PF11157 AVL55_07030 AVL55_07035 PF00202 Aminotransferase class-III AVL55_07040 PF04055 Radical SAM superfamily AVL55_07040 PF06968 Biotin and Thiamin Synthesis associated domain AVL55_07045 PF00155 Aminotransferase class I and II AVL55_07050 PF08241 Methyltransferase domain AVL55_07055 PF13500 AAA domain AVL55_07060 PF03575 Peptidase family S51 AVL55_07065 PF01451 Low molecular weight phosphotyrosine protein phosphatase AVL55_07070 PF01032 FecCD transport family AVL55_07075 PF00005 ABC transporter AVL55_07080 PF01474 Class-II DAHP synthetase family AVL55_07085 PF00512 His Kinase A (phospho-acceptor) domain AVL55_07085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_07085 PF13493 Domain of unknown function (DUF4118) AVL55_07090 PF00072 Response regulator receiver domain AVL55_07090 PF00486 Transcriptional regulatory protein, C terminal AVL55_07095 PF02254 TrkA-N domain AVL55_07100 PF02386 Cation transport protein AVL55_07110 PF12843 AVL55_07110 AVL55_07115 PF00005 ABC transporter AVL55_07115 PF00664 ABC transporter transmembrane region AVL55_07125 PF04055 Radical SAM superfamily AVL55_07125 PF06463 Molybdenum Cofactor Synthesis C AVL55_07125 PF13353 4Fe-4S single cluster domain AVL55_07130 PF13302 Acetyltransferase (GNAT) domain AVL55_07135 PF00072 Response regulator receiver domain AVL55_07155 PF00749 tRNA synthetases class I (E and Q), catalytic domain AVL55_07180 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AVL55_07190 PF06945 AVL55_07190 AVL55_07195 PF01207 Dihydrouridine synthase (Dus) AVL55_07205 PF13472 GDSL-like Lipase/Acylhydrolase family AVL55_07210 PF00005 ABC transporter AVL55_07215 PF02687 AVL55_07215 AVL55_07220 PF01370 NAD dependent epimerase/dehydratase family AVL55_07220 PF08338 Domain of unknown function (DUF1731) AVL55_07225 PF02152 Dihydroneopterin aldolase AVL55_07230 PF01594 AVL55_07230 AVL55_07235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_07240 PF00072 Response regulator receiver domain AVL55_07240 PF00486 Transcriptional regulatory protein, C terminal AVL55_07245 PF13670 AVL55_07245 AVL55_07250 PF16242 AVL55_07250 AVL55_07255 PF03795 YCII-related domain AVL55_07260 PF00290 Tryptophan synthase alpha chain AVL55_07265 PF00291 Pyridoxal-phosphate dependent enzyme AVL55_07270 PF00218 Indole-3-glycerol phosphate synthase AVL55_07270 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AVL55_07275 PF00591 Glycosyl transferase family, a/b domain AVL55_07275 PF02885 Glycosyl transferase family, helical bundle domain AVL55_07280 PF00117 Glutamine amidotransferase class-I AVL55_07285 PF00425 chorismate binding enzyme AVL55_07285 PF04715 Anthranilate synthase component I, N terminal region AVL55_07290 PF02811 PHP domain AVL55_07295 PF01300 Telomere recombination AVL55_07300 PF02616 ScpA/B protein AVL55_07305 PF04079 Putative transcriptional regulators (Ypuh-like) AVL55_07310 PF00849 RNA pseudouridylate synthase AVL55_07310 PF01479 S4 domain AVL55_07315 PF00248 Aldo/keto reductase family AVL55_07320 PF12464 Maltose acetyltransferase AVL55_07320 PF14602 Hexapeptide repeat of succinyl-transferase AVL55_07330 PF04286 AVL55_07330 AVL55_07335 PF05724 Thiopurine S-methyltransferase (TPMT) AVL55_07340 PF04355 SmpA / OmlA family AVL55_07345 PF02463 RecF/RecN/SMC N terminal domain AVL55_07350 PF00210 Ferritin-like domain AVL55_07355 PF01513 ATP-NAD kinase AVL55_07360 PF06934 AVL55_07360 AVL55_07365 PF00465 Iron-containing alcohol dehydrogenase AVL55_07370 PF13561 Enoyl-(Acyl carrier protein) reductase AVL55_07375 PF00326 Prolyl oligopeptidase family AVL55_07375 PF10503 Esterase PHB depolymerase AVL55_07380 PF00561 alpha/beta hydrolase fold AVL55_07385 PF02447 AVL55_07385 AVL55_07390 PF00593 TonB dependent receptor AVL55_07390 PF07715 TonB-dependent Receptor Plug Domain AVL55_07395 PF00072 Response regulator receiver domain AVL55_07395 PF00196 Bacterial regulatory proteins, luxR family AVL55_07405 PF00072 Response regulator receiver domain AVL55_07405 PF00474 Sodium:solute symporter family AVL55_07405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_07405 PF12860 AVL55_07405 AVL55_07410 PF01025 GrpE AVL55_07415 PF00012 Hsp70 protein AVL55_07420 PF00226 DnaJ domain AVL55_07420 PF00684 DnaJ central domain AVL55_07420 PF01556 DnaJ C terminal domain AVL55_07425 PF01322 Cytochrome C' AVL55_07430 PF00563 EAL domain AVL55_07430 PF00990 GGDEF domain AVL55_07430 PF13426 PAS domain AVL55_07435 PF00501 AMP-binding enzyme AVL55_07435 PF13193 AMP-binding enzyme C-terminal domain AVL55_07435 PF16177 AVL55_07435 AVL55_07440 PF01292 Prokaryotic cytochrome b561 AVL55_07445 PF01113 Dihydrodipicolinate reductase, N-terminus AVL55_07445 PF05173 Dihydrodipicolinate reductase, C-terminus AVL55_07450 PF00117 Glutamine amidotransferase class-I AVL55_07450 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AVL55_07455 PF02142 MGS-like domain AVL55_07455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVL55_07455 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AVL55_07460 PF01272 Transcription elongation factor, GreA/GreB, C-term AVL55_07460 PF03449 Transcription elongation factor, N-terminal AVL55_07470 PF00293 NUDIX domain AVL55_07475 PF11528 Protein of unknown function (DUF3224) AVL55_07480 PF00011 Hsp20/alpha crystallin family AVL55_07485 PF00871 Acetokinase family AVL55_07490 PF01515 Phosphate acetyl/butaryl transferase AVL55_07490 PF07085 DRTGG domain AVL55_07490 PF13500 AAA domain AVL55_07495 PF01979 Amidohydrolase family AVL55_07500 PF00795 Carbon-nitrogen hydrolase AVL55_07505 PF00571 CBS domain AVL55_07505 PF03471 Transporter associated domain AVL55_07510 PF02130 Uncharacterized protein family UPF0054 AVL55_07515 PF02562 PhoH-like protein AVL55_07520 PF00919 Uncharacterized protein family UPF0004 AVL55_07520 PF01938 TRAM domain AVL55_07520 PF04055 Radical SAM superfamily AVL55_07525 PF01494 FAD binding domain AVL55_07530 PF00440 Bacterial regulatory proteins, tetR family AVL55_07540 PF00593 TonB dependent receptor AVL55_07540 PF07715 TonB-dependent Receptor Plug Domain AVL55_07545 PF03061 Thioesterase superfamily AVL55_07550 PF01613 Flavin reductase like domain AVL55_07555 PF12973 ChrR Cupin-like domain AVL55_07560 PF01235 AVL55_07560 AVL55_07590 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AVL55_07595 PF01926 50S ribosome-binding GTPase AVL55_07595 PF06071 Protein of unknown function (DUF933) AVL55_07600 PF01195 Peptidyl-tRNA hydrolase AVL55_07605 PF01386 Ribosomal L25p family AVL55_07605 PF14693 Ribosomal protein TL5, C-terminal domain AVL55_07610 PF00107 Zinc-binding dehydrogenase AVL55_07610 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_07620 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AVL55_07620 PF14572 Phosphoribosyl synthetase-associated domain AVL55_07630 PF00288 GHMP kinases N terminal domain AVL55_07630 PF08544 GHMP kinases C terminal AVL55_07635 PF03550 Outer membrane lipoprotein LolB AVL55_07640 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AVL55_07640 PF01488 Shikimate / quinate 5-dehydrogenase AVL55_07640 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AVL55_07645 PF00472 RF-1 domain AVL55_07645 PF03462 PCRF domain AVL55_07650 PF13847 Methyltransferase domain AVL55_07655 PF00072 Response regulator receiver domain AVL55_07655 PF01966 HD domain AVL55_07655 PF11849 AVL55_07655 AVL55_07660 PF04247 AVL55_07660 AVL55_07665 PF00793 DAHP synthetase I family AVL55_07675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_07675 PF03466 LysR substrate binding domain AVL55_07680 PF01738 Dienelactone hydrolase family AVL55_07685 PF04241 AVL55_07685 AVL55_07690 PF01728 FtsJ-like methyltransferase AVL55_07695 PF00009 Elongation factor Tu GTP binding domain AVL55_07695 PF00679 Elongation factor G C-terminus AVL55_07695 PF03144 Elongation factor Tu domain 2 AVL55_07695 PF03764 Elongation factor G, domain IV AVL55_07695 PF14492 Elongation Factor G, domain II AVL55_07700 PF02560 Cyanate lyase C-terminal domain AVL55_07705 PF00069 Protein kinase domain AVL55_07705 PF13672 Protein phosphatase 2C AVL55_07710 PF01226 Formate/nitrite transporter AVL55_07715 PF01841 Transglutaminase-like superfamily AVL55_07715 PF11992 AVL55_07715 AVL55_07720 PF01882 AVL55_07720 AVL55_07725 PF07726 ATPase family associated with various cellular activities (AAA) AVL55_07730 PF03925 SeqA protein AVL55_07730 PF17206 AVL55_07730 AVL55_07735 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVL55_07735 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVL55_07735 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVL55_07735 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVL55_07740 PF00343 Carbohydrate phosphorylase AVL55_07745 PF00563 EAL domain AVL55_07745 PF00990 GGDEF domain AVL55_07750 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AVL55_07755 PF01230 HIT domain AVL55_07760 PF01906 Putative heavy-metal-binding AVL55_07765 PF00326 Prolyl oligopeptidase family AVL55_07770 PF00375 Sodium:dicarboxylate symporter family AVL55_07775 PF11446 AVL55_07775 AVL55_07780 PF02557 D-alanyl-D-alanine carboxypeptidase AVL55_07785 PF01546 Peptidase family M20/M25/M40 AVL55_07785 PF07687 Peptidase dimerisation domain AVL55_07790 PF03960 ArsC family AVL55_07800 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AVL55_07805 PF13840 ACT domain AVL55_07815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL55_07815 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal AVL55_07820 PF04209 homogentisate 1,2-dioxygenase AVL55_07825 PF12802 MarR family AVL55_07840 PF13582 Metallo-peptidase family M12B Reprolysin-like AVL55_07845 PF01548 AVL55_07845 AVL55_07845 PF02371 AVL55_07845 AVL55_07850 PF01609 Transposase DDE domain AVL55_07850 PF13340 AVL55_07850 AVL55_07855 PF13855 Leucine rich repeat AVL55_07865 PF12706 Beta-lactamase superfamily domain AVL55_07870 PF00873 AcrB/AcrD/AcrF family AVL55_07875 PF13437 HlyD family secretion protein AVL55_07875 PF13533 Biotin-lipoyl like AVL55_07880 PF00999 Sodium/hydrogen exchanger family AVL55_07880 PF02254 TrkA-N domain AVL55_07885 PF02525 Flavodoxin-like fold AVL55_07900 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVL55_07905 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL55_07905 PF01799 [2Fe-2S] binding domain AVL55_07910 PF01638 HxlR-like helix-turn-helix AVL55_07915 PF03992 Antibiotic biosynthesis monooxygenase AVL55_07920 PF00990 GGDEF domain AVL55_07920 PF08447 PAS fold AVL55_07925 PF06181 AVL55_07925 AVL55_07930 PF01979 Amidohydrolase family AVL55_07935 PF00576 HIUase/Transthyretin family AVL55_07940 PF09349 OHCU decarboxylase AVL55_07945 PF02625 XdhC and CoxI family AVL55_07945 PF13478 XdhC Rossmann domain AVL55_07950 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL55_07950 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVL55_07955 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL55_07955 PF00941 FAD binding domain in molybdopterin dehydrogenase AVL55_07955 PF01799 [2Fe-2S] binding domain AVL55_07955 PF03450 CO dehydrogenase flavoprotein C-terminal domain AVL55_07960 PF00440 Bacterial regulatory proteins, tetR family AVL55_07960 PF08362 YcdC-like protein, C-terminal region AVL55_07965 PF01522 Polysaccharide deacetylase AVL55_07975 PF00860 Permease family AVL55_07980 PF00962 Adenosine/AMP deaminase AVL55_07985 PF01627 Hpt domain AVL55_07995 PF00072 Response regulator receiver domain AVL55_07995 PF00990 GGDEF domain AVL55_08000 PF00072 Response regulator receiver domain AVL55_08000 PF00512 His Kinase A (phospho-acceptor) domain AVL55_08000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_08005 PF06516 AVL55_08005 AVL55_08010 PF00593 TonB dependent receptor AVL55_08010 PF07715 TonB-dependent Receptor Plug Domain AVL55_08015 PF00860 Permease family AVL55_08025 PF05899 Protein of unknown function (DUF861) AVL55_08030 PF01546 Peptidase family M20/M25/M40 AVL55_08035 PF00266 Aminotransferase class-V AVL55_08040 PF01925 AVL55_08040 AVL55_08045 PF01019 Gamma-glutamyltranspeptidase AVL55_08050 PF01425 Amidase AVL55_08055 PF06041 Bacterial protein of unknown function (DUF924) AVL55_08060 PF01380 SIS domain AVL55_08060 PF01418 Helix-turn-helix domain, rpiR family AVL55_08065 PF02517 CAAX protease self-immunity AVL55_08070 PF00924 Mechanosensitive ion channel AVL55_08075 PF11279 AVL55_08075 AVL55_08080 PF13561 Enoyl-(Acyl carrier protein) reductase AVL55_08085 PF03881 Fructosamine kinase AVL55_08090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVL55_08090 PF02824 TGS domain AVL55_08090 PF03129 Anticodon binding domain AVL55_08090 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AVL55_08095 PF00707 Translation initiation factor IF-3, C-terminal domain AVL55_08095 PF05198 Translation initiation factor IF-3, N-terminal domain AVL55_08100 PF01632 Ribosomal protein L35 AVL55_08105 PF00453 Ribosomal protein L20 AVL55_08110 PF00483 Nucleotidyl transferase AVL55_08110 PF01050 Mannose-6-phosphate isomerase AVL55_08115 PF02397 AVL55_08115 AVL55_08115 PF13727 CoA-binding domain AVL55_08120 PF10082 AVL55_08120 AVL55_08125 PF02563 Polysaccharide biosynthesis/export protein AVL55_08125 PF10531 SLBB domain AVL55_08130 PF02706 Chain length determinant protein AVL55_08130 PF13614 AAA domain AVL55_08130 PF13807 AVL55_08130 AVL55_08150 PF04932 AVL55_08150 AVL55_08160 PF00563 EAL domain AVL55_08160 PF00990 GGDEF domain AVL55_08160 PF16448 AVL55_08160 AVL55_08165 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP AVL55_08170 PF00534 Glycosyl transferases group 1 AVL55_08170 PF13439 Glycosyltransferase Family 4 AVL55_08175 PF04932 AVL55_08175 AVL55_08180 PF00534 Glycosyl transferases group 1 AVL55_08180 PF13439 Glycosyltransferase Family 4 AVL55_08185 PF00535 Glycosyl transferase family 2 AVL55_08190 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AVL55_08195 PF01565 FAD binding domain AVL55_08195 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AVL55_08200 PF00534 Glycosyl transferases group 1 AVL55_08205 PF13440 AVL55_08205 AVL55_08210 PF00535 Glycosyl transferase family 2 AVL55_08220 PF04577 AVL55_08220 AVL55_08225 PF00534 Glycosyl transferases group 1 AVL55_08230 PF00534 Glycosyl transferases group 1 AVL55_08235 PF03050 AVL55_08235 AVL55_08235 PF13005 AVL55_08235 AVL55_08240 PF08241 Methyltransferase domain AVL55_08245 PF01409 tRNA synthetases class II core domain (F) AVL55_08245 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AVL55_08250 PF01588 Putative tRNA binding domain AVL55_08250 PF03147 Ferredoxin-fold anticodon binding domain AVL55_08250 PF03483 B3/4 domain AVL55_08250 PF03484 tRNA synthetase B5 domain AVL55_08255 PF00216 Bacterial DNA-binding protein AVL55_08275 PF04073 Aminoacyl-tRNA editing domain AVL55_08280 PF01804 Penicillin amidase AVL55_08285 PF00933 Glycosyl hydrolase family 3 N terminal domain AVL55_08290 PF01923 Cobalamin adenosyltransferase AVL55_08295 PF10972 AVL55_08295 AVL55_08300 PF00270 DEAD/DEAH box helicase AVL55_08300 PF00271 Helicase conserved C-terminal domain AVL55_08300 PF02559 CarD-like/TRCF domain AVL55_08300 PF03461 TRCF domain AVL55_08305 PF07238 PilZ domain AVL55_08310 PF02687 AVL55_08310 AVL55_08310 PF12704 MacB-like periplasmic core domain AVL55_08315 PF00156 Phosphoribosyl transferase domain AVL55_08325 PF01891 Cobalt uptake substrate-specific transmembrane region AVL55_08330 PF03372 Endonuclease/Exonuclease/phosphatase family AVL55_08340 PF11042 AVL55_08340 AVL55_08345 PF02657 Fe-S metabolism associated domain AVL55_08350 PF13692 Glycosyl transferases group 1 AVL55_08355 PF08668 HDOD domain AVL55_08360 PF13622 Thioesterase-like superfamily AVL55_08365 PF07690 Major Facilitator Superfamily AVL55_08370 PF12697 Alpha/beta hydrolase family AVL55_08375 PF00483 Nucleotidyl transferase AVL55_08380 PF10604 Polyketide cyclase / dehydrase and lipid transport AVL55_08385 PF07690 Major Facilitator Superfamily AVL55_08395 PF00682 HMGL-like AVL55_08400 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AVL55_08400 PF00364 Biotin-requiring enzyme AVL55_08400 PF02785 Biotin carboxylase C-terminal domain AVL55_08400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVL55_08405 PF00378 Enoyl-CoA hydratase/isomerase family AVL55_08410 PF01039 Carboxyl transferase domain AVL55_08415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_08415 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_08415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_08420 PF00376 MerR family regulatory protein AVL55_08420 PF09278 MerR, DNA binding AVL55_08425 PF00108 Thiolase, N-terminal domain AVL55_08425 PF02803 Thiolase, C-terminal domain AVL55_08435 PF00266 Aminotransferase class-V AVL55_08440 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL55_08440 PF00990 GGDEF domain AVL55_08445 PF03961 AVL55_08445 AVL55_08450 PF00929 Exonuclease AVL55_08450 PF08411 Exonuclease C-terminal AVL55_08455 PF00072 Response regulator receiver domain AVL55_08455 PF00512 His Kinase A (phospho-acceptor) domain AVL55_08455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_08455 PF02743 Cache domain AVL55_08460 PF01112 Asparaginase AVL55_08465 PF00571 CBS domain AVL55_08470 PF02333 Phytase AVL55_08475 PF00593 TonB dependent receptor AVL55_08475 PF07715 TonB-dependent Receptor Plug Domain AVL55_08475 PF13715 AVL55_08475 AVL55_08480 PF00990 GGDEF domain AVL55_08485 PF12625 AVL55_08485 AVL55_08485 PF12833 Helix-turn-helix domain AVL55_08490 PF03553 AVL55_08490 AVL55_08495 PF00270 DEAD/DEAH box helicase AVL55_08495 PF00271 Helicase conserved C-terminal domain AVL55_08495 PF04408 Helicase associated domain (HA2) AVL55_08495 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AVL55_08495 PF11898 AVL55_08495 AVL55_08500 PF07238 PilZ domain AVL55_08505 PF09834 AVL55_08505 AVL55_08510 PF10672 S-adenosylmethionine-dependent methyltransferase AVL55_08515 PF00107 Zinc-binding dehydrogenase AVL55_08515 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_08520 PF00075 RNase H AVL55_08525 PF00929 Exonuclease AVL55_08550 PF00563 EAL domain AVL55_08550 PF12792 AVL55_08550 AVL55_08555 PF00005 ABC transporter AVL55_08560 PF02687 AVL55_08560 AVL55_08560 PF12704 MacB-like periplasmic core domain AVL55_08565 PF00375 Sodium:dicarboxylate symporter family AVL55_08570 PF02369 Bacterial Ig-like domain (group 1) AVL55_08575 PF04996 Succinylarginine dihydrolase AVL55_08580 PF01131 DNA topoisomerase AVL55_08580 PF01396 AVL55_08580 AVL55_08580 PF01751 Toprim domain AVL55_08580 PF08272 Topoisomerase I zinc-ribbon-like AVL55_08585 PF09831 AVL55_08585 AVL55_08590 PF01457 Leishmanolysin AVL55_08595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_08595 PF03466 LysR substrate binding domain AVL55_08600 PF12804 MobA-like NTP transferase domain AVL55_08605 PF02634 FdhD/NarQ family AVL55_08610 PF00384 Molybdopterin oxidoreductase AVL55_08610 PF01568 Molydopterin dinucleotide binding domain AVL55_08615 PF13673 Acetyltransferase (GNAT) domain AVL55_08620 PF00072 Response regulator receiver domain AVL55_08620 PF00486 Transcriptional regulatory protein, C terminal AVL55_08625 PF00512 His Kinase A (phospho-acceptor) domain AVL55_08625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_08630 PF02958 Ecdysteroid kinase AVL55_08635 PF00575 S1 RNA binding domain AVL55_08635 PF10150 Ribonuclease E/G family AVL55_08640 PF00849 RNA pseudouridylate synthase AVL55_08640 PF01479 S4 domain AVL55_08645 PF13419 Haloacid dehalogenase-like hydrolase AVL55_08650 PF02545 Maf-like protein AVL55_08655 PF02620 AVL55_08655 AVL55_08660 PF01783 Ribosomal L32p protein family AVL55_08665 PF02504 Fatty acid synthesis protein AVL55_08670 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AVL55_08670 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AVL55_08675 PF00698 Acyl transferase domain AVL55_08680 PF13561 Enoyl-(Acyl carrier protein) reductase AVL55_08685 PF00550 Phosphopantetheine attachment site AVL55_08690 PF00109 Beta-ketoacyl synthase, N-terminal domain AVL55_08690 PF02801 Beta-ketoacyl synthase, C-terminal domain AVL55_08695 PF01063 Aminotransferase class IV AVL55_08700 PF02618 YceG-like family AVL55_08705 PF02223 Thymidylate kinase AVL55_08710 PF13177 DNA polymerase III, delta subunit AVL55_08715 PF01026 TatD related DNase AVL55_08720 PF12766 Pyridoxamine 5'-phosphate oxidase AVL55_08725 PF13460 NADH(P)-binding AVL55_08730 PF00990 GGDEF domain AVL55_08730 PF07495 Y_Y_Y domain AVL55_08735 PF01401 Angiotensin-converting enzyme AVL55_08740 PF06094 AIG2-like family AVL55_08745 PF09685 AVL55_08745 AVL55_08755 PF13561 Enoyl-(Acyl carrier protein) reductase AVL55_08760 PF00561 alpha/beta hydrolase fold AVL55_08765 PF00378 Enoyl-CoA hydratase/isomerase family AVL55_08765 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVL55_08765 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVL55_08770 PF00108 Thiolase, N-terminal domain AVL55_08770 PF02803 Thiolase, C-terminal domain AVL55_08775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_08775 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_08775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_08775 PF12418 AVL55_08775 AVL55_08775 PF12806 AVL55_08775 AVL55_08780 PF12514 AVL55_08780 AVL55_08785 PF12514 AVL55_08785 AVL55_08790 PF04198 Putative sugar-binding domain AVL55_08795 PF12514 AVL55_08795 AVL55_08800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_08800 PF03466 LysR substrate binding domain AVL55_08805 PF01575 MaoC like domain AVL55_08810 PF08085 AVL55_08810 AVL55_08815 PF00924 Mechanosensitive ion channel AVL55_08825 PF01329 Pterin 4 alpha carbinolamine dehydratase AVL55_08840 PF00072 Response regulator receiver domain AVL55_08840 PF00512 His Kinase A (phospho-acceptor) domain AVL55_08840 PF01627 Hpt domain AVL55_08840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_08840 PF03707 AVL55_08840 AVL55_08840 PF08447 PAS fold AVL55_08840 PF13426 PAS domain AVL55_08845 PF00072 Response regulator receiver domain AVL55_08845 PF13487 HD domain AVL55_08850 PF02576 Uncharacterised BCR, YhbC family COG0779 AVL55_08850 PF17384 AVL55_08850 AVL55_08855 PF00575 S1 RNA binding domain AVL55_08855 PF08529 NusA N-terminal domain AVL55_08855 PF13184 NusA-like KH domain AVL55_08855 PF14520 Helix-hairpin-helix domain AVL55_08860 PF00009 Elongation factor Tu GTP binding domain AVL55_08860 PF04760 Translation initiation factor IF-2, N-terminal region AVL55_08860 PF08364 AVL55_08860 AVL55_08860 PF11987 Translation-initiation factor 2 AVL55_08865 PF02033 Ribosome-binding factor A AVL55_08870 PF01509 TruB family pseudouridylate synthase (N terminal domain) AVL55_08870 PF09157 Pseudouridine synthase II TruB, C-terminal AVL55_08870 PF16198 AVL55_08870 AVL55_08875 PF00312 Ribosomal protein S15 AVL55_08880 PF00849 RNA pseudouridylate synthase AVL55_08880 PF01479 S4 domain AVL55_08890 PF00583 Acetyltransferase (GNAT) family AVL55_08890 PF00795 Carbon-nitrogen hydrolase AVL55_08895 PF13640 2OG-Fe(II) oxygenase superfamily AVL55_08900 PF00072 Response regulator receiver domain AVL55_08910 PF10009 AVL55_08910 AVL55_08915 PF00578 AhpC/TSA family AVL55_08915 PF10417 C-terminal domain of 1-Cys peroxiredoxin AVL55_08920 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_08920 PF13192 Thioredoxin domain AVL55_08925 PF00593 TonB dependent receptor AVL55_08925 PF07715 TonB-dependent Receptor Plug Domain AVL55_08935 PF03929 AVL55_08935 AVL55_08945 PF03572 Peptidase family S41 AVL55_08955 PF04055 Radical SAM superfamily AVL55_08955 PF08497 AVL55_08955 AVL55_08955 PF11842 AVL55_08955 AVL55_08960 PF01878 EVE domain AVL55_08970 PF11750 AVL55_08970 AVL55_08975 PF14499 Domain of unknown function (DUF4437) AVL55_08980 PF00593 TonB dependent receptor AVL55_08980 PF07715 TonB-dependent Receptor Plug Domain AVL55_09000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL55_09005 PF01668 SmpB protein AVL55_09010 PF03364 Polyketide cyclase / dehydrase and lipid transport AVL55_09015 PF03658 RnfH family Ubiquitin AVL55_09020 PF01047 MarR family AVL55_09025 PF02028 BCCT family transporter AVL55_09030 PF00593 TonB dependent receptor AVL55_09030 PF07715 TonB-dependent Receptor Plug Domain AVL55_09035 PF13432 Tetratricopeptide repeat AVL55_09035 PF13469 Sulfotransferase family AVL55_09040 PF03618 AVL55_09040 AVL55_09045 PF00391 PEP-utilising enzyme, mobile domain AVL55_09045 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AVL55_09045 PF02896 PEP-utilising enzyme, TIM barrel domain AVL55_09050 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVL55_09050 PF10518 TAT (twin-arginine translocation) pathway signal sequence AVL55_09055 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL55_09055 PF01799 [2Fe-2S] binding domain AVL55_09065 PF16108 AVL55_09065 AVL55_09070 PF13673 Acetyltransferase (GNAT) domain AVL55_09075 PF08007 Cupin superfamily protein AVL55_09080 PF00211 Adenylate and Guanylate cyclase catalytic domain AVL55_09085 PF00206 Lyase AVL55_09085 PF08328 Adenylosuccinate lyase C-terminal AVL55_09090 PF04356 Protein of unknown function (DUF489) AVL55_09095 PF03054 tRNA methyl transferase AVL55_09100 PF00849 RNA pseudouridylate synthase AVL55_09105 PF03971 Monomeric isocitrate dehydrogenase AVL55_09110 PF00313 'Cold-shock' DNA-binding domain AVL55_09115 PF02617 ATP-dependent Clp protease adaptor protein ClpS AVL55_09120 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_09120 PF02861 Clp amino terminal domain AVL55_09120 PF07724 AAA domain (Cdc48 subfamily) AVL55_09120 PF10431 C-terminal, D2-small domain, of ClpB protein AVL55_09125 PF01176 Translation initiation factor 1A / IF-1 AVL55_09130 PF04376 AVL55_09130 AVL55_09130 PF04377 AVL55_09130 AVL55_09135 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AVL55_09140 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_09145 PF04217 AVL55_09145 AVL55_09150 PF10263 AVL55_09150 AVL55_09150 PF17283 AVL55_09150 AVL55_09155 PF01343 Peptidase family S49 AVL55_09165 PF07681 AVL55_09165 AVL55_09170 PF00881 Nitroreductase family AVL55_09175 PF10977 AVL55_09175 AVL55_09180 PF00710 Asparaginase AVL55_09185 PF04055 Radical SAM superfamily AVL55_09185 PF16881 AVL55_09185 AVL55_09190 PF03099 Biotin/lipoate A/B protein ligase family AVL55_09195 PF04359 Protein of unknown function (DUF493) AVL55_09200 PF00768 D-alanyl-D-alanine carboxypeptidase AVL55_09200 PF07943 Penicillin-binding protein 5, C-terminal domain AVL55_09205 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AVL55_09205 PF05036 Sporulation related domain AVL55_09210 PF01098 AVL55_09210 AVL55_09220 PF02590 Predicted SPOUT methyltransferase AVL55_09225 PF02410 Oligomerisation domain AVL55_09230 PF01467 Cytidylyltransferase AVL55_09235 PF06144 DNA polymerase III, delta subunit AVL55_09235 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AVL55_09240 PF04390 Lipopolysaccharide-assembly AVL55_09245 PF00133 tRNA synthetases class I (I, L, M and V) AVL55_09245 PF08264 Anticodon-binding domain of tRNA AVL55_09245 PF13603 Leucyl-tRNA synthetase, Domain 2 AVL55_09255 PF05362 Lon protease (S16) C-terminal proteolytic domain AVL55_09255 PF13654 AAA domain AVL55_09260 PF06271 AVL55_09260 AVL55_09270 PF13561 Enoyl-(Acyl carrier protein) reductase AVL55_09275 PF01985 CRS1 / YhbY (CRM) domain AVL55_09280 PF01728 FtsJ-like methyltransferase AVL55_09285 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_09285 PF01434 Peptidase family M41 AVL55_09285 PF06480 FtsH Extracellular AVL55_09290 PF00809 Pterin binding enzyme AVL55_09295 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVL55_09295 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVL55_09295 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVL55_09295 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVL55_09300 PF00121 Triosephosphate isomerase AVL55_09305 PF03840 Preprotein translocase SecG subunit AVL55_09315 PF00563 EAL domain AVL55_09315 PF00990 GGDEF domain AVL55_09320 PF01814 Hemerythrin HHE cation binding domain AVL55_09325 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AVL55_09325 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AVL55_09330 PF00781 Diacylglycerol kinase catalytic domain AVL55_09330 PF00782 Dual specificity phosphatase, catalytic domain AVL55_09335 PF11086 AVL55_09335 AVL55_09340 PF00106 short chain dehydrogenase AVL55_09345 PF08282 haloacid dehalogenase-like hydrolase AVL55_09355 PF01028 Eukaryotic DNA topoisomerase I, catalytic core AVL55_09360 PF00474 Sodium:solute symporter family AVL55_09365 PF00696 Amino acid kinase family AVL55_09370 PF00171 Aldehyde dehydrogenase family AVL55_09375 PF00924 Mechanosensitive ion channel AVL55_09380 PF14279 AVL55_09380 AVL55_09385 PF00013 KH domain AVL55_09385 PF00575 S1 RNA binding domain AVL55_09385 PF01138 3' exoribonuclease family, domain 1 AVL55_09385 PF03725 3' exoribonuclease family, domain 2 AVL55_09385 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AVL55_09390 PF06844 Protein of unknown function (DUF1244) AVL55_09395 PF13175 AAA ATPase domain AVL55_09410 PF01124 MAPEG family AVL55_09435 PF03544 Gram-negative bacterial TonB protein C-terminal AVL55_09440 PF04542 Sigma-70 region 2 AVL55_09440 PF08281 Sigma-70, region 4 AVL55_09450 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AVL55_09455 PF13181 Tetratricopeptide repeat AVL55_09465 PF07264 Etoposide-induced protein 2 AVL55_09470 PF02463 RecF/RecN/SMC N terminal domain AVL55_09475 PF04354 ZipA, C-terminal FtsZ-binding domain AVL55_09480 PF00533 BRCA1 C Terminus (BRCT) domain AVL55_09480 PF01653 NAD-dependent DNA ligase adenylation domain AVL55_09480 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AVL55_09480 PF03120 NAD-dependent DNA ligase OB-fold domain AVL55_09480 PF12826 Helix-hairpin-helix motif AVL55_09490 PF09835 AVL55_09490 AVL55_09495 PF00753 Metallo-beta-lactamase superfamily AVL55_09495 PF03772 AVL55_09495 AVL55_09500 PF00005 ABC transporter AVL55_09500 PF00664 ABC transporter transmembrane region AVL55_09505 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AVL55_09510 PF03966 Trm112p-like protein AVL55_09515 PF02348 Cytidylyltransferase AVL55_09520 PF00106 short chain dehydrogenase AVL55_09525 PF00919 Uncharacterized protein family UPF0004 AVL55_09525 PF04055 Radical SAM superfamily AVL55_09530 PF11143 AVL55_09530 AVL55_09540 PF00899 ThiF family AVL55_09545 PF13409 Glutathione S-transferase, N-terminal domain AVL55_09545 PF13410 Glutathione S-transferase, C-terminal domain AVL55_09550 PF02678 Pirin AVL55_09550 PF05726 Pirin C-terminal cupin domain AVL55_09560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVL55_09560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVL55_09560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVL55_09560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVL55_09570 PF11911 AVL55_09570 AVL55_09575 PF00285 Citrate synthase AVL55_09580 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AVL55_09590 PF00890 FAD binding domain AVL55_09590 PF02910 Fumarate reductase flavoprotein C-term AVL55_09595 PF13085 2Fe-2S iron-sulfur cluster binding domain AVL55_09595 PF13534 4Fe-4S dicluster domain AVL55_09600 PF00676 Dehydrogenase E1 component AVL55_09600 PF02779 Transketolase, pyrimidine binding domain AVL55_09600 PF16078 AVL55_09600 AVL55_09600 PF16870 AVL55_09600 AVL55_09605 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AVL55_09605 PF00364 Biotin-requiring enzyme AVL55_09605 PF02817 e3 binding domain AVL55_09610 PF00549 CoA-ligase AVL55_09610 PF08442 ATP-grasp domain AVL55_09615 PF00549 CoA-ligase AVL55_09615 PF02629 CoA binding domain AVL55_09620 PF07715 TonB-dependent Receptor Plug Domain AVL55_09625 PF04820 Tryptophan halogenase AVL55_09630 PF00593 TonB dependent receptor AVL55_09630 PF07715 TonB-dependent Receptor Plug Domain AVL55_09635 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AVL55_09635 PF03714 Bacterial pullanase-associated domain AVL55_09635 PF11852 Domain of unknown function (DUF3372) AVL55_09640 PF01734 Patatin-like phospholipase AVL55_09650 PF00588 SpoU rRNA Methylase family AVL55_09655 PF13444 Acetyltransferase (GNAT) domain AVL55_09660 PF00128 Alpha amylase, catalytic domain AVL55_09665 PF00128 Alpha amylase, catalytic domain AVL55_09665 PF09087 Cyclomaltodextrinase, N-terminal AVL55_09665 PF10438 Cyclo-malto-dextrinase C-terminal domain AVL55_09670 PF07690 Major Facilitator Superfamily AVL55_09670 PF13347 MFS/sugar transport protein AVL55_09675 PF00128 Alpha amylase, catalytic domain AVL55_09680 PF00356 Bacterial regulatory proteins, lacI family AVL55_09680 PF13377 Periplasmic binding protein-like domain AVL55_09685 PF00749 tRNA synthetases class I (E and Q), catalytic domain AVL55_09685 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AVL55_09690 PF00106 short chain dehydrogenase AVL55_09695 PF12262 AVL55_09695 AVL55_09700 PF01804 Penicillin amidase AVL55_09705 PF01343 Peptidase family S49 AVL55_09705 PF08496 AVL55_09705 AVL55_09710 PF00440 Bacterial regulatory proteins, tetR family AVL55_09720 PF01784 NIF3 (NGG1p interacting factor 3) AVL55_09725 PF08242 Methyltransferase domain AVL55_09730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVL55_09730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL55_09735 PF00255 Glutathione peroxidase AVL55_09740 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVL55_09740 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AVL55_09745 PF00072 Response regulator receiver domain AVL55_09750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_09750 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_09750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_09755 PF16113 AVL55_09755 AVL55_09760 PF13847 Methyltransferase domain AVL55_09765 PF13242 HAD-hyrolase-like AVL55_09770 PF11893 AVL55_09770 AVL55_09775 PF07208 Protein of unknown function (DUF1414) AVL55_09780 PF04245 AVL55_09780 AVL55_09785 PF01242 6-pyruvoyl tetrahydropterin synthase AVL55_09790 PF01551 Peptidase family M23 AVL55_09795 PF05299 M61 glycyl aminopeptidase AVL55_09795 PF13180 PDZ domain AVL55_09800 PF07238 PilZ domain AVL55_09800 PF12945 Flagellar protein YcgR AVL55_09805 PF06127 AVL55_09805 AVL55_09810 PF06580 AVL55_09810 AVL55_09815 PF00072 Response regulator receiver domain AVL55_09815 PF04397 LytTr DNA-binding domain AVL55_09820 PF00365 Phosphofructokinase AVL55_09835 PF00072 Response regulator receiver domain AVL55_09840 PF11993 AVL55_09840 AVL55_09845 PF00581 Rhodanese-like domain AVL55_09850 PF13499 EF-hand domain pair AVL55_09855 PF03061 Thioesterase superfamily AVL55_09865 PF00107 Zinc-binding dehydrogenase AVL55_09865 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_09870 PF00106 short chain dehydrogenase AVL55_09875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_09875 PF03466 LysR substrate binding domain AVL55_09925 PF13538 UvrD-like helicase C-terminal domain AVL55_09925 PF13604 AAA domain AVL55_09925 PF14490 Helix-hairpin-helix containing domain AVL55_09950 PF00270 DEAD/DEAH box helicase AVL55_09950 PF00271 Helicase conserved C-terminal domain AVL55_09955 PF01144 Coenzyme A transferase AVL55_09960 PF01144 Coenzyme A transferase AVL55_09965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_09965 PF03466 LysR substrate binding domain AVL55_09975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_09980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_09980 PF03466 LysR substrate binding domain AVL55_09985 PF03313 AVL55_09985 AVL55_09985 PF03315 Serine dehydratase beta chain AVL55_09990 PF00293 NUDIX domain AVL55_09995 PF00425 chorismate binding enzyme AVL55_09995 PF04715 Anthranilate synthase component I, N terminal region AVL55_10000 PF05681 AVL55_10000 AVL55_10000 PF05683 Fumarase C-terminus AVL55_10005 PF02646 AVL55_10005 AVL55_10010 PF00082 Subtilase family AVL55_10010 PF02225 PA domain AVL55_10010 PF05922 Peptidase inhibitor I9 AVL55_10015 PF00676 Dehydrogenase E1 component AVL55_10020 PF02779 Transketolase, pyrimidine binding domain AVL55_10020 PF02780 Transketolase, C-terminal domain AVL55_10025 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AVL55_10025 PF00364 Biotin-requiring enzyme AVL55_10025 PF02817 e3 binding domain AVL55_10030 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ AVL55_10035 PF00069 Protein kinase domain AVL55_10040 PF13622 Thioesterase-like superfamily AVL55_10045 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_10050 PF00266 Aminotransferase class-V AVL55_10055 PF04402 Protein of unknown function (DUF541) AVL55_10060 PF13185 GAF domain AVL55_10070 PF04352 ProQ/FINO family AVL55_10070 PF17516 AVL55_10070 AVL55_10075 PF00595 PDZ domain (Also known as DHR or GLGF) AVL55_10075 PF03572 Peptidase family S41 AVL55_10075 PF11818 AVL55_10075 AVL55_10080 PF00209 Sodium:neurotransmitter symporter family AVL55_10085 PF03553 AVL55_10085 AVL55_10090 PF01433 Peptidase family M1 AVL55_10090 PF11940 Domain of unknown function (DUF3458) AVL55_10090 PF17432 AVL55_10090 AVL55_10095 PF11197 AVL55_10095 AVL55_10100 PF06980 AVL55_10100 AVL55_10105 PF07044 Protein of unknown function (DUF1329) AVL55_10110 PF14870 Photosynthesis system II assembly factor YCF48 AVL55_10115 PF03176 MMPL family AVL55_10120 PF05088 AVL55_10120 AVL55_10125 PF01180 Dihydroorotate dehydrogenase AVL55_10130 PF01170 Putative RNA methylase family UPF0020 AVL55_10130 PF02926 THUMP domain AVL55_10130 PF10672 S-adenosylmethionine-dependent methyltransferase AVL55_10135 PF05768 Glutaredoxin-like domain (DUF836) AVL55_10140 PF00005 ABC transporter AVL55_10140 PF12848 ABC transporter AVL55_10140 PF16326 AVL55_10140 AVL55_10145 PF11949 AVL55_10145 AVL55_10150 PF04957 Ribosome modulation factor AVL55_10155 PF07977 FabA-like domain AVL55_10175 PF00665 Integrase core domain AVL55_10175 PF13384 Homeodomain-like domain AVL55_10195 PF13614 AAA domain AVL55_10200 PF02195 ParB-like nuclease domain AVL55_10215 PF13401 AAA domain AVL55_10220 PF00665 Integrase core domain AVL55_10225 PF00239 Resolvase, N terminal domain AVL55_10245 PF05175 Methyltransferase small domain AVL55_10260 PF01381 Helix-turn-helix AVL55_10265 PF01051 Initiator Replication protein AVL55_10275 PF02195 ParB-like nuclease domain AVL55_10280 PF13614 AAA domain AVL55_10285 PF04796 AVL55_10285 AVL55_10330 PF01757 AVL55_10330 AVL55_10355 PF00990 GGDEF domain AVL55_10370 PF00563 EAL domain AVL55_10375 PF00563 EAL domain AVL55_10385 PF04381 Putative exonuclease, RdgC AVL55_10410 PF00437 Type II/IV secretion system protein AVL55_10455 PF00580 UvrD/REP helicase N-terminal domain AVL55_10455 PF13361 UvrD-like helicase C-terminal domain AVL55_10505 PF00589 Phage integrase family AVL55_10575 PF13444 Acetyltransferase (GNAT) domain AVL55_10580 PF05901 AVL55_10580 AVL55_10665 PF00875 DNA photolyase AVL55_10665 PF03441 FAD binding domain of DNA photolyase AVL55_10670 PF00875 DNA photolyase AVL55_10670 PF03441 FAD binding domain of DNA photolyase AVL55_10675 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AVL55_10685 PF00589 Phage integrase family AVL55_10695 PF01219 Prokaryotic diacylglycerol kinase AVL55_10700 PF00582 Universal stress protein family AVL55_10705 PF00034 Cytochrome c AVL55_10710 PF01645 Conserved region in glutamate synthase AVL55_10715 PF00999 Sodium/hydrogen exchanger family AVL55_10715 PF02254 TrkA-N domain AVL55_10720 PF00210 Ferritin-like domain AVL55_10725 PF00210 Ferritin-like domain AVL55_10735 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVL55_10740 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO AVL55_10745 PF05545 AVL55_10745 AVL55_10750 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVL55_10750 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AVL55_10755 PF05751 AVL55_10755 AVL55_10760 PF00122 E1-E2 ATPase AVL55_10760 PF00403 Heavy-metal-associated domain AVL55_10760 PF00702 haloacid dehalogenase-like hydrolase AVL55_10760 PF12156 AVL55_10760 AVL55_10765 PF03597 AVL55_10765 AVL55_10770 PF13386 AVL55_10770 AVL55_10775 PF00027 Cyclic nucleotide-binding domain AVL55_10775 PF13545 Crp-like helix-turn-helix domain AVL55_10780 PF00582 Universal stress protein family AVL55_10785 PF01171 PP-loop family AVL55_10790 PF01734 Patatin-like phospholipase AVL55_10795 PF11205 AVL55_10795 AVL55_10800 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AVL55_10810 PF01810 AVL55_10810 AVL55_10815 PF02146 Sir2 family AVL55_10820 PF00581 Rhodanese-like domain AVL55_10825 PF08534 Redoxin AVL55_10830 PF03942 AVL55_10830 AVL55_10850 PF01066 CDP-alcohol phosphatidyltransferase AVL55_10855 PF01541 GIY-YIG catalytic domain AVL55_10855 PF02151 UvrB/uvrC motif AVL55_10855 PF08459 UvrC Helix-hairpin-helix N-terminal AVL55_10855 PF14520 Helix-hairpin-helix domain AVL55_10860 PF00072 Response regulator receiver domain AVL55_10860 PF00196 Bacterial regulatory proteins, luxR family AVL55_10865 PF02678 Pirin AVL55_10870 PF00155 Aminotransferase class I and II AVL55_10875 PF03781 Sulfatase-modifying factor enzyme 1 AVL55_10875 PF12867 DinB superfamily AVL55_10875 PF13847 Methyltransferase domain AVL55_10895 PF07681 AVL55_10895 AVL55_10900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_10900 PF03466 LysR substrate binding domain AVL55_10905 PF11840 AVL55_10905 AVL55_10915 PF01027 Inhibitor of apoptosis-promoting Bax1 AVL55_10920 PF02635 DsrE/DsrF-like family AVL55_10925 PF02635 DsrE/DsrF-like family AVL55_10935 PF04358 DsrC like protein AVL55_10940 PF10116 AVL55_10940 AVL55_10945 PF02586 Uncharacterised ACR, COG2135 AVL55_10950 PF00326 Prolyl oligopeptidase family AVL55_10955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVL55_10955 PF02403 Seryl-tRNA synthetase N-terminal domain AVL55_10960 PF02537 AVL55_10960 AVL55_10965 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_10965 PF12002 MgsA AAA+ ATPase C terminal AVL55_10965 PF16193 AVL55_10965 AVL55_10970 PF03548 Outer membrane lipoprotein carrier protein LolA AVL55_10975 PF01580 FtsK/SpoIIIE family AVL55_10975 PF09397 Ftsk gamma domain AVL55_10975 PF13491 AVL55_10975 AVL55_10980 PF01037 AsnC family AVL55_10980 PF13412 Winged helix-turn-helix DNA-binding AVL55_10985 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AVL55_10985 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AVL55_10990 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AVL55_11000 PF06305 AVL55_11000 AVL55_11010 PF00216 Bacterial DNA-binding protein AVL55_11015 PF00575 S1 RNA binding domain AVL55_11020 PF02224 Cytidylate kinase AVL55_11025 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AVL55_11030 PF00266 Aminotransferase class-V AVL55_11035 PF00521 DNA gyrase/topoisomerase IV, subunit A AVL55_11035 PF03989 DNA gyrase C-terminal domain, beta-propeller AVL55_11040 PF13489 Methyltransferase domain AVL55_11045 PF00317 Ribonucleotide reductase, all-alpha domain AVL55_11045 PF02867 Ribonucleotide reductase, barrel domain AVL55_11045 PF03477 ATP cone domain AVL55_11055 PF00268 Ribonucleotide reductase, small chain AVL55_11065 PF13643 AVL55_11065 AVL55_11085 PF07693 AVL55_11085 AVL55_11115 PF00580 UvrD/REP helicase N-terminal domain AVL55_11115 PF13361 UvrD-like helicase C-terminal domain AVL55_11135 PF04471 Restriction endonuclease AVL55_11175 PF00589 Phage integrase family AVL55_11175 PF02899 Phage integrase, N-terminal SAM-like domain AVL55_11185 PF00589 Phage integrase family AVL55_11185 PF13009 AVL55_11185 AVL55_11190 PF00589 Phage integrase family AVL55_11200 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL55_11205 PF00106 short chain dehydrogenase AVL55_11210 PF09932 AVL55_11210 AVL55_11215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL55_11225 PF00892 EamA-like transporter family AVL55_11230 PF01259 SAICAR synthetase AVL55_11235 PF06804 NlpB/DapX lipoprotein AVL55_11240 PF00701 Dihydrodipicolinate synthetase family AVL55_11245 PF13740 ACT domain AVL55_11250 PF00578 AhpC/TSA family AVL55_11255 PF01594 AVL55_11255 AVL55_11260 PF01435 Peptidase family M48 AVL55_11265 PF00578 AhpC/TSA family AVL55_11270 PF03960 ArsC family AVL55_11275 PF03358 NADPH-dependent FMN reductase AVL55_11280 PF09842 AVL55_11280 AVL55_11290 PF00308 Bacterial dnaA protein AVL55_11295 PF09839 AVL55_11295 AVL55_11300 PF00586 AIR synthase related protein, N-terminal domain AVL55_11300 PF02769 AIR synthase related protein, C-terminal domain AVL55_11305 PF00551 Formyl transferase AVL55_11310 PF11306 Protein of unknown function (DUF3108) AVL55_11315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_11315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_11315 PF09317 AVL55_11315 AVL55_11325 PF00072 Response regulator receiver domain AVL55_11325 PF00196 Bacterial regulatory proteins, luxR family AVL55_11330 PF13649 Methyltransferase domain AVL55_11335 PF08003 Protein of unknown function (DUF1698) AVL55_11340 PF00485 Phosphoribulokinase / Uridine kinase family AVL55_11345 PF08282 haloacid dehalogenase-like hydrolase AVL55_11355 PF00128 Alpha amylase, catalytic domain AVL55_11360 PF13419 Haloacid dehalogenase-like hydrolase AVL55_11365 PF00994 Probable molybdopterin binding domain AVL55_11365 PF03453 MoeA N-terminal region (domain I and II) AVL55_11365 PF03454 MoeA C-terminal region (domain IV) AVL55_11370 PF01554 MatE AVL55_11375 PF12804 MobA-like NTP transferase domain AVL55_11380 PF05762 VWA domain containing CoxE-like protein AVL55_11385 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_11390 PF00291 Pyridoxal-phosphate dependent enzyme AVL55_11415 PF03773 AVL55_11415 AVL55_11420 PF01545 Cation efflux family AVL55_11435 PF02639 AVL55_11435 AVL55_11440 PF13561 Enoyl-(Acyl carrier protein) reductase AVL55_11445 PF13561 Enoyl-(Acyl carrier protein) reductase AVL55_11450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_11450 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_11450 PF12418 AVL55_11450 AVL55_11450 PF12806 AVL55_11450 AVL55_11455 PF01965 DJ-1/PfpI family AVL55_11455 PF12833 Helix-turn-helix domain AVL55_11460 PF00593 TonB dependent receptor AVL55_11460 PF07715 TonB-dependent Receptor Plug Domain AVL55_11470 PF00326 Prolyl oligopeptidase family AVL55_11470 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AVL55_11475 PF00873 AcrB/AcrD/AcrF family AVL55_11480 PF13437 HlyD family secretion protein AVL55_11485 PF16561 AVL55_11485 AVL55_11490 PF00766 Electron transfer flavoprotein FAD-binding domain AVL55_11490 PF01012 Electron transfer flavoprotein domain AVL55_11495 PF01012 Electron transfer flavoprotein domain AVL55_11500 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase AVL55_11500 PF13450 NAD(P)-binding Rossmann-like domain AVL55_11505 PF00816 H-NS histone family AVL55_11510 PF12697 Alpha/beta hydrolase family AVL55_11515 PF10981 AVL55_11515 AVL55_11520 PF00258 Flavodoxin AVL55_11525 PF01609 Transposase DDE domain AVL55_11525 PF13006 AVL55_11525 AVL55_11530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_11530 PF00672 HAMP domain AVL55_11535 PF01475 Ferric uptake regulator family AVL55_11540 PF01063 Aminotransferase class IV AVL55_11545 PF02626 Allophanate hydrolase subunit 2 AVL55_11550 PF02682 Allophanate hydrolase subunit 1 AVL55_11555 PF03746 LamB/YcsF family AVL55_11560 PF13509 S1 domain AVL55_11565 PF02566 OsmC-like protein AVL55_11570 PF16576 AVL55_11570 AVL55_11575 PF00873 AcrB/AcrD/AcrF family AVL55_11580 PF00873 AcrB/AcrD/AcrF family AVL55_11585 PF12514 AVL55_11585 AVL55_11590 PF09955 AVL55_11590 AVL55_11595 PF00155 Aminotransferase class I and II AVL55_11600 PF13023 HD domain AVL55_11605 PF01966 HD domain AVL55_11605 PF13286 Phosphohydrolase-associated domain AVL55_11610 PF00174 Oxidoreductase molybdopterin binding domain AVL55_11615 PF01794 AVL55_11615 AVL55_11620 PF09335 AVL55_11620 AVL55_11630 PF02810 SEC-C motif AVL55_11635 PF00107 Zinc-binding dehydrogenase AVL55_11635 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_11640 PF01636 Phosphotransferase enzyme family AVL55_11645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_11645 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_11645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_11650 PF00300 Histidine phosphatase superfamily (branch 1) AVL55_11655 PF00593 TonB dependent receptor AVL55_11655 PF07715 TonB-dependent Receptor Plug Domain AVL55_11660 PF02625 XdhC and CoxI family AVL55_11660 PF13478 XdhC Rossmann domain AVL55_11665 PF01323 DSBA-like thioredoxin domain AVL55_11670 PF13472 GDSL-like Lipase/Acylhydrolase family AVL55_11675 PF04055 Radical SAM superfamily AVL55_11675 PF06969 HemN C-terminal domain AVL55_11680 PF00005 ABC transporter AVL55_11685 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_11690 PF13531 Bacterial extracellular solute-binding protein AVL55_11695 PF02391 MoaE protein AVL55_11700 PF02597 ThiS family AVL55_11705 PF01967 MoaC family AVL55_11710 PF00994 Probable molybdopterin binding domain AVL55_11715 PF00899 ThiF family AVL55_11720 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AVL55_11725 PF02423 Ornithine cyclodeaminase/mu-crystallin family AVL55_11730 PF00155 Aminotransferase class I and II AVL55_11735 PF01037 AsnC family AVL55_11735 PF13404 AsnC-type helix-turn-helix domain AVL55_11745 PF16313 AVL55_11745 AVL55_11745 PF17148 AVL55_11745 AVL55_11750 PF01136 AVL55_11750 AVL55_11750 PF16325 AVL55_11750 AVL55_11755 PF12838 4Fe-4S dicluster domain AVL55_11760 PF00155 Aminotransferase class I and II AVL55_11765 PF03435 Saccharopine dehydrogenase AVL55_11770 PF00155 Aminotransferase class I and II AVL55_11775 PF07498 Rho termination factor, N-terminal domain AVL55_11785 PF08908 AVL55_11785 AVL55_11790 PF01717 Cobalamin-independent synthase, Catalytic domain AVL55_11795 PF00593 TonB dependent receptor AVL55_11795 PF07715 TonB-dependent Receptor Plug Domain AVL55_11800 PF14526 Integron-associated effector binding protein AVL55_11805 PF00892 EamA-like transporter family AVL55_11810 PF11160 AVL55_11810 AVL55_11825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL55_11840 PF13245 Part of AAA domain AVL55_11840 PF13538 UvrD-like helicase C-terminal domain AVL55_11845 PF00580 UvrD/REP helicase N-terminal domain AVL55_11845 PF12705 PD-(D/E)XK nuclease superfamily AVL55_11845 PF13361 UvrD-like helicase C-terminal domain AVL55_11850 PF04257 Exodeoxyribonuclease V, gamma subunit AVL55_11870 PF13175 AAA ATPase domain AVL55_11875 PF13087 AAA domain AVL55_11875 PF13245 Part of AAA domain AVL55_11895 PF13538 UvrD-like helicase C-terminal domain AVL55_11895 PF13604 AAA domain AVL55_11895 PF14490 Helix-hairpin-helix containing domain AVL55_11915 PF00589 Phage integrase family AVL55_11915 PF02899 Phage integrase, N-terminal SAM-like domain AVL55_11925 PF00501 AMP-binding enzyme AVL55_11935 PF00563 EAL domain AVL55_11935 PF00990 GGDEF domain AVL55_11935 PF13426 PAS domain AVL55_11940 PF00753 Metallo-beta-lactamase superfamily AVL55_11940 PF07521 RNA-metabolising metallo-beta-lactamase AVL55_11945 PF10982 Protein of unknown function (DUF2789) AVL55_11950 PF11042 AVL55_11950 AVL55_11955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_11955 PF03466 LysR substrate binding domain AVL55_11960 PF04219 AVL55_11960 AVL55_11965 PF05239 PRC-barrel domain AVL55_11970 PF01022 Bacterial regulatory protein, arsR family AVL55_11975 PF00581 Rhodanese-like domain AVL55_11980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_11980 PF03466 LysR substrate binding domain AVL55_11985 PF06055 AVL55_11985 AVL55_11990 PF00072 Response regulator receiver domain AVL55_11990 PF00158 Sigma-54 interaction domain AVL55_11990 PF02954 Bacterial regulatory protein, Fis family AVL55_12000 PF00512 His Kinase A (phospho-acceptor) domain AVL55_12000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_12000 PF05227 CHASE3 domain AVL55_12005 PF00072 Response regulator receiver domain AVL55_12010 PF00072 Response regulator receiver domain AVL55_12010 PF00512 His Kinase A (phospho-acceptor) domain AVL55_12010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_12050 PF03993 AVL55_12050 AVL55_12055 PF07023 AVL55_12055 AVL55_12065 PF01235 AVL55_12065 AVL55_12070 PF00246 Zinc carboxypeptidase AVL55_12075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL55_12075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AVL55_12085 PF01641 SelR domain AVL55_12090 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AVL55_12090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVL55_12095 PF00128 Alpha amylase, catalytic domain AVL55_12095 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AVL55_12100 PF00128 Alpha amylase, catalytic domain AVL55_12100 PF02806 Alpha amylase, C-terminal all-beta domain AVL55_12100 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AVL55_12105 PF02446 4-alpha-glucanotransferase AVL55_12110 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL55_12110 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AVL55_12115 PF01263 Aldose 1-epimerase AVL55_12120 PF01081 KDPG and KHG aldolase AVL55_12125 PF02685 Glucokinase AVL55_12130 PF00920 Dehydratase family AVL55_12135 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AVL55_12140 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AVL55_12140 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AVL55_12145 PF01380 SIS domain AVL55_12145 PF01418 Helix-turn-helix domain, rpiR family AVL55_12150 PF00224 Pyruvate kinase, barrel domain AVL55_12150 PF02887 Pyruvate kinase, alpha/beta domain AVL55_12170 PF13566 AVL55_12170 AVL55_12175 PF04972 BON domain AVL55_12180 PF03372 Endonuclease/Exonuclease/phosphatase family AVL55_12190 PF02709 N-terminal domain of galactosyltransferase AVL55_12195 PF08892 AVL55_12195 AVL55_12200 PF09347 Domain of unknown function (DUF1989) AVL55_12210 PF13377 Periplasmic binding protein-like domain AVL55_12215 PF00072 Response regulator receiver domain AVL55_12215 PF00512 His Kinase A (phospho-acceptor) domain AVL55_12215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_12215 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AVL55_12220 PF13280 AVL55_12220 AVL55_12230 PF00932 Lamin Tail Domain AVL55_12230 PF03372 Endonuclease/Exonuclease/phosphatase family AVL55_12230 PF04231 Endonuclease I AVL55_12235 PF01433 Peptidase family M1 AVL55_12235 PF11838 ERAP1-like C-terminal domain AVL55_12250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_12250 PF03466 LysR substrate binding domain AVL55_12255 PF01965 DJ-1/PfpI family AVL55_12260 PF00465 Iron-containing alcohol dehydrogenase AVL55_12265 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL55_12275 PF00881 Nitroreductase family AVL55_12280 PF00199 Catalase AVL55_12280 PF06628 Catalase-related immune-responsive AVL55_12290 PF13280 AVL55_12290 AVL55_12305 PF00403 Heavy-metal-associated domain AVL55_12305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVL55_12305 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_12310 PF03203 AVL55_12310 AVL55_12315 PF00403 Heavy-metal-associated domain AVL55_12320 PF02411 AVL55_12320 AVL55_12325 PF13411 MerR HTH family regulatory protein AVL55_12335 PF03572 Peptidase family S41 AVL55_12340 PF01610 AVL55_12340 AVL55_12340 PF13542 AVL55_12340 AVL55_12340 PF14690 AVL55_12340 AVL55_12345 PF01252 AVL55_12345 AVL55_12350 PF01545 Cation efflux family AVL55_12355 PF00376 MerR family regulatory protein AVL55_12355 PF09278 MerR, DNA binding AVL55_12365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL55_12375 PF11225 AVL55_12375 AVL55_12400 PF00589 Phage integrase family AVL55_12400 PF13495 Phage integrase, N-terminal SAM-like domain AVL55_12415 PF00939 Sodium:sulfate symporter transmembrane region AVL55_12420 PF00692 dUTPase AVL55_12425 PF10609 ParA/MinD ATPase like AVL55_12430 PF01588 Putative tRNA binding domain AVL55_12430 PF09334 tRNA synthetases class I (M) AVL55_12435 PF00924 Mechanosensitive ion channel AVL55_12440 PF08241 Methyltransferase domain AVL55_12445 PF00753 Metallo-beta-lactamase superfamily AVL55_12445 PF16123 AVL55_12445 AVL55_12450 PF01464 Transglycosylase SLT domain AVL55_12450 PF01476 LysM domain AVL55_12460 PF01406 tRNA synthetases class I (C) catalytic domain AVL55_12460 PF09190 DALR domain AVL55_12465 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AVL55_12470 PF00149 Calcineurin-like phosphoesterase AVL55_12475 PF00245 Alkaline phosphatase AVL55_12480 PF00245 Alkaline phosphatase AVL55_12490 PF07290 AVL55_12490 AVL55_12495 PF01145 SPFH domain / Band 7 family AVL55_12495 PF15975 AVL55_12495 AVL55_12500 PF00128 Alpha amylase, catalytic domain AVL55_12505 PF01638 HxlR-like helix-turn-helix AVL55_12510 PF00107 Zinc-binding dehydrogenase AVL55_12510 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_12515 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_12515 PF13602 Zinc-binding dehydrogenase AVL55_12520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_12520 PF03466 LysR substrate binding domain AVL55_12525 PF00450 Serine carboxypeptidase AVL55_12530 PF04336 AVL55_12530 AVL55_12535 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AVL55_12540 PF06930 AVL55_12540 AVL55_12545 PF00156 Phosphoribosyl transferase domain AVL55_12545 PF13522 Glutamine amidotransferase domain AVL55_12550 PF02674 AVL55_12550 AVL55_12555 PF05036 Sporulation related domain AVL55_12560 PF08245 Mur ligase middle domain AVL55_12565 PF01039 Carboxyl transferase domain AVL55_12570 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL55_12575 PF01416 tRNA pseudouridine synthase AVL55_12585 PF01118 Semialdehyde dehydrogenase, NAD binding domain AVL55_12585 PF02774 Semialdehyde dehydrogenase, dimerisation domain AVL55_12590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVL55_12590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL55_12590 PF11890 Domain of unknown function (DUF3410) AVL55_12595 PF00596 Class II Aldolase and Adducin N-terminal domain AVL55_12600 PF00027 Cyclic nucleotide-binding domain AVL55_12600 PF13545 Crp-like helix-turn-helix domain AVL55_12605 PF00561 alpha/beta hydrolase fold AVL55_12610 PF05016 Plasmid stabilisation system protein AVL55_12620 PF00775 Dioxygenase AVL55_12630 PF13358 DDE superfamily endonuclease AVL55_12645 PF00144 Beta-lactamase AVL55_12650 PF00109 Beta-ketoacyl synthase, N-terminal domain AVL55_12650 PF02801 Beta-ketoacyl synthase, C-terminal domain AVL55_12655 PF01266 FAD dependent oxidoreductase AVL55_12655 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AVL55_12680 PF00583 Acetyltransferase (GNAT) family AVL55_12690 PF11158 AVL55_12690 AVL55_12695 PF01551 Peptidase family M23 AVL55_12700 PF13302 Acetyltransferase (GNAT) domain AVL55_12705 PF00005 ABC transporter AVL55_12715 PF02492 CobW/HypB/UreG, nucleotide-binding domain AVL55_12720 PF01965 DJ-1/PfpI family AVL55_12720 PF12833 Helix-turn-helix domain AVL55_12725 PF00857 Isochorismatase family AVL55_12730 PF00857 Isochorismatase family AVL55_12735 PF02667 AVL55_12735 AVL55_12740 PF00072 Response regulator receiver domain AVL55_12740 PF00512 His Kinase A (phospho-acceptor) domain AVL55_12740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_12740 PF07494 Two component regulator propeller AVL55_12740 PF07495 Y_Y_Y domain AVL55_12745 PF02627 Carboxymuconolactone decarboxylase family AVL55_12750 PF00675 Insulinase (Peptidase family M16) AVL55_12750 PF05193 Peptidase M16 inactive domain AVL55_12755 PF08891 AVL55_12755 AVL55_12760 PF01513 ATP-NAD kinase AVL55_12765 PF04315 AVL55_12765 AVL55_12775 PF01643 Acyl-ACP thioesterase AVL55_12780 PF13975 AVL55_12780 AVL55_12785 PF08888 HopJ type III effector protein AVL55_12790 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL55_12790 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_12795 PF00378 Enoyl-CoA hydratase/isomerase family AVL55_12800 PF00440 Bacterial regulatory proteins, tetR family AVL55_12800 PF13305 WHG domain AVL55_12805 PF00732 GMC oxidoreductase AVL55_12805 PF05199 GMC oxidoreductase AVL55_12810 PF07273 Protein of unknown function (DUF1439) AVL55_12815 PF03007 AVL55_12815 AVL55_12815 PF06974 AVL55_12815 AVL55_12820 PF00440 Bacterial regulatory proteins, tetR family AVL55_12820 PF13972 Bacterial transcriptional repressor AVL55_12825 PF04286 AVL55_12825 AVL55_12830 PF01734 Patatin-like phospholipase AVL55_12830 PF11815 AVL55_12830 AVL55_12845 PF05597 AVL55_12845 AVL55_12850 PF00326 Prolyl oligopeptidase family AVL55_12850 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AVL55_12855 PF00392 Bacterial regulatory proteins, gntR family AVL55_12855 PF07840 FadR C-terminal domain AVL55_12860 PF06450 AVL55_12860 AVL55_12865 PF02600 Disulfide bond formation protein DsbB AVL55_12870 PF13302 Acetyltransferase (GNAT) domain AVL55_12875 PF03692 AVL55_12875 AVL55_12880 PF01557 Fumarylacetoacetate (FAA) hydrolase family AVL55_12885 PF13406 Transglycosylase SLT domain AVL55_12890 PF05166 YcgL domain AVL55_12895 PF00570 HRDC domain AVL55_12895 PF01612 3'-5' exonuclease AVL55_12900 PF00501 AMP-binding enzyme AVL55_12900 PF13193 AMP-binding enzyme C-terminal domain AVL55_12905 PF00561 alpha/beta hydrolase fold AVL55_12910 PF03843 AVL55_12910 AVL55_12920 PF00814 Glycoprotease family AVL55_12925 PF13307 Helicase C-terminal domain AVL55_12940 PF01545 Cation efflux family AVL55_12950 PF04828 Glutathione-dependent formaldehyde-activating enzyme AVL55_12955 PF13202 EF hand AVL55_12960 PF01569 PAP2 superfamily AVL55_12975 PF00128 Alpha amylase, catalytic domain AVL55_12975 PF02806 Alpha amylase, C-terminal all-beta domain AVL55_12980 PF01925 AVL55_12980 AVL55_12985 PF10003 AVL55_12985 AVL55_12995 PF04366 AVL55_12995 AVL55_13010 PF01634 ATP phosphoribosyltransferase AVL55_13010 PF08029 HisG, C-terminal domain AVL55_13015 PF00815 Histidinol dehydrogenase AVL55_13020 PF00155 Aminotransferase class I and II AVL55_13025 PF00475 Imidazoleglycerol-phosphate dehydratase AVL55_13025 PF08645 Polynucleotide kinase 3 phosphatase AVL55_13030 PF00117 Glutamine amidotransferase class-I AVL55_13035 PF00977 Histidine biosynthesis protein AVL55_13040 PF00977 Histidine biosynthesis protein AVL55_13045 PF01502 Phosphoribosyl-AMP cyclohydrolase AVL55_13045 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AVL55_13050 PF01226 Formate/nitrite transporter AVL55_13055 PF00675 Insulinase (Peptidase family M16) AVL55_13055 PF05193 Peptidase M16 inactive domain AVL55_13060 PF00717 Peptidase S24-like AVL55_13065 PF00593 TonB dependent receptor AVL55_13065 PF07715 TonB-dependent Receptor Plug Domain AVL55_13075 PF01124 MAPEG family AVL55_13080 PF00406 Adenylate kinase AVL55_13080 PF05191 Adenylate kinase, active site lid AVL55_13085 PF00183 Hsp90 protein AVL55_13085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_13090 PF02132 RecR protein AVL55_13090 PF13662 Toprim domain AVL55_13105 PF00175 Oxidoreductase NAD-binding domain AVL55_13105 PF00970 Oxidoreductase FAD-binding domain AVL55_13110 PF02575 YbaB/EbfC DNA-binding family AVL55_13115 PF12169 DNA polymerase III subunits gamma and tau domain III AVL55_13115 PF12170 DNA polymerase III tau subunit V interacting with alpha AVL55_13115 PF13177 DNA polymerase III, delta subunit AVL55_13120 PF00156 Phosphoribosyl transferase domain AVL55_13125 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) AVL55_13130 PF05114 Protein of unknown function (DUF692) AVL55_13150 PF12679 AVL55_13150 AVL55_13155 PF00005 ABC transporter AVL55_13160 PF00561 alpha/beta hydrolase fold AVL55_13165 PF04397 LytTr DNA-binding domain AVL55_13195 PF01066 CDP-alcohol phosphatidyltransferase AVL55_13205 PF07589 AVL55_13205 AVL55_13210 PF13181 Tetratricopeptide repeat AVL55_13210 PF13432 Tetratricopeptide repeat AVL55_13210 PF14559 Tetratricopeptide repeat AVL55_13215 PF01565 FAD binding domain AVL55_13215 PF09330 D-lactate dehydrogenase, membrane binding AVL55_13220 PF02652 AVL55_13220 AVL55_13225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_13225 PF03466 LysR substrate binding domain AVL55_13240 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_13240 PF02861 Clp amino terminal domain AVL55_13240 PF07724 AAA domain (Cdc48 subfamily) AVL55_13240 PF10431 C-terminal, D2-small domain, of ClpB protein AVL55_13245 PF02578 Multi-copper polyphenol oxidoreductase laccase AVL55_13250 PF00849 RNA pseudouridylate synthase AVL55_13250 PF01479 S4 domain AVL55_13255 PF13525 Outer membrane lipoprotein AVL55_13260 PF12973 ChrR Cupin-like domain AVL55_13265 PF04542 Sigma-70 region 2 AVL55_13265 PF08281 Sigma-70, region 4 AVL55_13270 PF02190 ATP-dependent protease La (LON) domain AVL55_13275 PF12680 SnoaL-like domain AVL55_13280 PF00106 short chain dehydrogenase AVL55_13285 PF01593 Flavin containing amine oxidoreductase AVL55_13290 PF07103 AVL55_13290 AVL55_13295 PF02353 Mycolic acid cyclopropane synthetase AVL55_13300 PF00691 OmpA family AVL55_13300 PF13677 AVL55_13300 AVL55_13305 PF01618 AVL55_13305 AVL55_13310 PF02609 Exonuclease VII small subunit AVL55_13315 PF00348 Polyprenyl synthetase AVL55_13320 PF02779 Transketolase, pyrimidine binding domain AVL55_13320 PF02780 Transketolase, C-terminal domain AVL55_13320 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AVL55_13325 PF04608 Phosphatidylglycerophosphatase A AVL55_13330 PF00586 AIR synthase related protein, N-terminal domain AVL55_13330 PF02769 AIR synthase related protein, C-terminal domain AVL55_13335 PF01029 NusB family AVL55_13340 PF00885 6,7-dimethyl-8-ribityllumazine synthase AVL55_13345 PF00925 GTP cyclohydrolase II AVL55_13345 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AVL55_13350 PF00677 Lumazine binding domain AVL55_13355 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AVL55_13355 PF01872 RibD C-terminal domain AVL55_13360 PF03477 ATP cone domain AVL55_13365 PF00464 Serine hydroxymethyltransferase AVL55_13370 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_13370 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AVL55_13375 PF00005 ABC transporter AVL55_13375 PF12848 ABC transporter AVL55_13380 PF07238 PilZ domain AVL55_13385 PF13481 AAA domain AVL55_13385 PF13541 Subunit ChlI of Mg-chelatase AVL55_13390 PF07238 PilZ domain AVL55_13395 PF12710 haloacid dehalogenase-like hydrolase AVL55_13405 PF01026 TatD related DNase AVL55_13410 PF01243 Pyridoxamine 5'-phosphate oxidase AVL55_13410 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AVL55_13415 PF01926 50S ribosome-binding GTPase AVL55_13415 PF07650 KH domain AVL55_13420 PF00035 Double-stranded RNA binding motif AVL55_13420 PF14622 Ribonuclease-III-like AVL55_13425 PF00717 Peptidase S24-like AVL55_13425 PF10502 Signal peptidase, peptidase S26 AVL55_13430 PF00009 Elongation factor Tu GTP binding domain AVL55_13430 PF00679 Elongation factor G C-terminus AVL55_13430 PF03144 Elongation factor Tu domain 2 AVL55_13430 PF06421 GTP-binding protein LepA C-terminus AVL55_13435 PF04246 AVL55_13435 AVL55_13440 PF03888 MucB/RseB family AVL55_13440 PF17188 AVL55_13440 AVL55_13445 PF03872 Anti sigma-E protein RseA, N-terminal domain AVL55_13445 PF03873 Anti sigma-E protein RseA, C-terminal domain AVL55_13450 PF04542 Sigma-70 region 2 AVL55_13450 PF08281 Sigma-70, region 4 AVL55_13455 PF00890 FAD binding domain AVL55_13455 PF02910 Fumarate reductase flavoprotein C-term AVL55_13460 PF01575 MaoC like domain AVL55_13470 PF03937 Flavinator of succinate dehydrogenase AVL55_13475 PF01571 Aminomethyltransferase folate-binding domain AVL55_13480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL55_13485 PF00543 Nitrogen regulatory protein P-II AVL55_13490 PF02540 NAD synthase AVL55_13495 PF12019 Type II transport protein GspH AVL55_13505 PF07963 Prokaryotic N-terminal methylation motif AVL55_13525 PF07963 Prokaryotic N-terminal methylation motif AVL55_13525 PF16732 AVL55_13525 AVL55_13530 PF05567 Neisseria PilC beta-propeller domain AVL55_13535 PF14341 AVL55_13535 AVL55_13540 PF07963 Prokaryotic N-terminal methylation motif AVL55_13540 PF16074 AVL55_13540 AVL55_13550 PF02401 LytB protein AVL55_13555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL55_13560 PF01252 AVL55_13560 AVL55_13565 PF00133 tRNA synthetases class I (I, L, M and V) AVL55_13565 PF06827 Zinc finger found in FPG and IleRS AVL55_13565 PF08264 Anticodon-binding domain of tRNA AVL55_13570 PF01687 Riboflavin kinase AVL55_13570 PF06574 FAD synthetase AVL55_13575 PF03023 AVL55_13575 AVL55_13580 PF01649 Ribosomal protein S20 AVL55_13585 PF00106 short chain dehydrogenase AVL55_13590 PF01636 Phosphotransferase enzyme family AVL55_13595 PF00106 short chain dehydrogenase AVL55_13600 PF01758 Sodium Bile acid symporter family AVL55_13610 PF00149 Calcineurin-like phosphoesterase AVL55_13615 PF01553 Acyltransferase AVL55_13615 PF13444 Acetyltransferase (GNAT) domain AVL55_13620 PF01546 Peptidase family M20/M25/M40 AVL55_13620 PF07687 Peptidase dimerisation domain AVL55_13625 PF13616 PPIC-type PPIASE domain AVL55_13625 PF13624 SurA N-terminal domain AVL55_13630 PF00216 Bacterial DNA-binding protein AVL55_13635 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_13635 PF02190 ATP-dependent protease La (LON) domain AVL55_13635 PF05362 Lon protease (S16) C-terminal proteolytic domain AVL55_13640 PF06689 ClpX C4-type zinc finger AVL55_13640 PF07724 AAA domain (Cdc48 subfamily) AVL55_13640 PF10431 C-terminal, D2-small domain, of ClpB protein AVL55_13645 PF00574 Clp protease AVL55_13650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL55_13650 PF05697 Bacterial trigger factor protein (TF) AVL55_13650 PF05698 Bacterial trigger factor protein (TF) C-terminus AVL55_13685 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AVL55_13685 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AVL55_13695 PF01980 Uncharacterised protein family UPF0066 AVL55_13700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVL55_13700 PF03129 Anticodon binding domain AVL55_13700 PF04073 Aminoacyl-tRNA editing domain AVL55_13705 PF12706 Beta-lactamase superfamily domain AVL55_13710 PF02253 Phospholipase A1 AVL55_13715 PF00850 Histone deacetylase domain AVL55_13720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_13725 PF00117 Glutamine amidotransferase class-I AVL55_13725 PF00958 GMP synthase C terminal domain AVL55_13725 PF02540 NAD synthase AVL55_13730 PF00478 IMP dehydrogenase / GMP reductase domain AVL55_13730 PF00571 CBS domain AVL55_13735 PF02601 AVL55_13735 AVL55_13735 PF13742 AVL55_13735 AVL55_13750 PF01926 50S ribosome-binding GTPase AVL55_13750 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AVL55_13755 PF13360 PQQ-like domain AVL55_13760 PF09976 Tetratricopeptide repeat AVL55_13765 PF03129 Anticodon binding domain AVL55_13765 PF13393 Histidyl-tRNA synthetase AVL55_13770 PF04551 GcpE protein AVL55_13775 PF13413 Helix-turn-helix domain AVL55_13775 PF13464 AVL55_13775 AVL55_13780 PF01476 LysM domain AVL55_13780 PF13424 Tetratricopeptide repeat AVL55_13780 PF13432 Tetratricopeptide repeat AVL55_13785 PF04055 Radical SAM superfamily AVL55_13790 PF00334 Nucleoside diphosphate kinase AVL55_13795 PF02657 Fe-S metabolism associated domain AVL55_13800 PF01883 Domain of unknown function DUF59 AVL55_13805 PF01521 Iron-sulphur cluster biosynthesis AVL55_13810 PF00266 Aminotransferase class-V AVL55_13815 PF01458 Uncharacterized protein family (UPF0051) AVL55_13820 PF00005 ABC transporter AVL55_13825 PF01458 Uncharacterized protein family (UPF0051) AVL55_13830 PF00266 Aminotransferase class-V AVL55_13835 PF02082 Transcriptional regulator AVL55_13840 PF00561 alpha/beta hydrolase fold AVL55_13845 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_13850 PF00588 SpoU rRNA Methylase family AVL55_13855 PF00459 Inositol monophosphatase family AVL55_13860 PF02355 Protein export membrane protein AVL55_13860 PF07549 SecD/SecF GG Motif AVL55_13865 PF02355 Protein export membrane protein AVL55_13865 PF07549 SecD/SecF GG Motif AVL55_13865 PF13721 SecD export protein N-terminal TM region AVL55_13870 PF02699 Preprotein translocase subunit AVL55_13875 PF01702 Queuine tRNA-ribosyltransferase AVL55_13880 PF02547 Queuosine biosynthesis protein AVL55_13890 PF09938 AVL55_13890 AVL55_13895 PF04012 AVL55_13895 AVL55_13900 PF07885 Ion channel AVL55_13905 PF10679 AVL55_13905 AVL55_13910 PF03994 AVL55_13910 AVL55_13915 PF06693 AVL55_13915 AVL55_13920 PF03738 Glutathionylspermidine synthase preATP-grasp AVL55_13925 PF01694 Rhomboid family AVL55_13935 PF00005 ABC transporter AVL55_13940 PF02687 AVL55_13940 AVL55_13945 PF07143 Hydroxyneurosporene synthase (CrtC) AVL55_13945 PF17186 AVL55_13945 AVL55_13950 PF04960 Glutaminase AVL55_13955 PF00245 Alkaline phosphatase AVL55_13960 PF00072 Response regulator receiver domain AVL55_13960 PF01584 CheW-like domain AVL55_13965 PF00463 Isocitrate lyase family AVL55_13970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_13970 PF03466 LysR substrate binding domain AVL55_13975 PF01274 Malate synthase AVL55_13980 PF01734 Patatin-like phospholipase AVL55_13985 PF01370 NAD dependent epimerase/dehydratase family AVL55_13990 PF14907 Uncharacterised nucleotidyltransferase AVL55_14005 PF13365 Trypsin-like peptidase domain AVL55_14010 PF02698 DUF218 domain AVL55_14015 PF13480 Acetyltransferase (GNAT) domain AVL55_14020 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_14025 PF13692 Glycosyl transferases group 1 AVL55_14035 PF00535 Glycosyl transferase family 2 AVL55_14040 PF00534 Glycosyl transferases group 1 AVL55_14040 PF13439 Glycosyltransferase Family 4 AVL55_14050 PF13480 Acetyltransferase (GNAT) domain AVL55_14055 PF00733 Asparagine synthase AVL55_14055 PF13537 Glutamine amidotransferase domain AVL55_14060 PF00534 Glycosyl transferases group 1 AVL55_14060 PF13439 Glycosyltransferase Family 4 AVL55_14065 PF04932 AVL55_14065 AVL55_14070 PF00535 Glycosyl transferase family 2 AVL55_14080 PF04230 AVL55_14080 AVL55_14085 PF04230 AVL55_14085 AVL55_14090 PF13440 AVL55_14090 AVL55_14095 PF03567 Sulfotransferase family AVL55_14105 PF13229 Right handed beta helix region AVL55_14110 PF04892 AVL55_14110 AVL55_14115 PF13440 AVL55_14115 AVL55_14120 PF00534 Glycosyl transferases group 1 AVL55_14120 PF13439 Glycosyltransferase Family 4 AVL55_14125 PF09721 AVL55_14125 AVL55_14125 PF11984 AVL55_14125 AVL55_14130 PF01522 Polysaccharide deacetylase AVL55_14130 PF11959 AVL55_14130 AVL55_14135 PF02397 AVL55_14135 AVL55_14140 PF02563 Polysaccharide biosynthesis/export protein AVL55_14140 PF10531 SLBB domain AVL55_14145 PF02706 Chain length determinant protein AVL55_14150 PF13614 AAA domain AVL55_14160 PF13401 AAA domain AVL55_14165 PF01541 GIY-YIG catalytic domain AVL55_14170 PF03994 AVL55_14170 AVL55_14175 PF03710 Glutamate-ammonia ligase adenylyltransferase AVL55_14175 PF08335 GlnD PII-uridylyltransferase AVL55_14180 PF10671 Toxin co-regulated pilus biosynthesis protein Q AVL55_14185 PF03279 AVL55_14185 AVL55_14190 PF11280 AVL55_14190 AVL55_14200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_14200 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_14200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_14200 PF09317 AVL55_14200 AVL55_14205 PF01609 Transposase DDE domain AVL55_14205 PF13808 AVL55_14205 AVL55_14210 PF00593 TonB dependent receptor AVL55_14210 PF07715 TonB-dependent Receptor Plug Domain AVL55_14215 PF00675 Insulinase (Peptidase family M16) AVL55_14220 PF04055 Radical SAM superfamily AVL55_14220 PF13186 Iron-sulfur cluster-binding domain AVL55_14220 PF13353 4Fe-4S single cluster domain AVL55_14225 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AVL55_14230 PF03070 TENA/THI-4/PQQC family AVL55_14235 PF12706 Beta-lactamase superfamily domain AVL55_14240 PF00883 Cytosol aminopeptidase family, catalytic domain AVL55_14245 PF01061 AVL55_14245 AVL55_14250 PF00005 ABC transporter AVL55_14265 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL55_14270 PF13360 PQQ-like domain AVL55_14275 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVL55_14280 PF03547 AVL55_14280 AVL55_14290 PF00990 GGDEF domain AVL55_14295 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AVL55_14295 PF05221 S-adenosyl-L-homocysteine hydrolase AVL55_14300 PF00557 Metallopeptidase family M24 AVL55_14300 PF01321 Creatinase/Prolidase N-terminal domain AVL55_14305 PF02696 AVL55_14305 AVL55_14330 PF00230 Major intrinsic protein AVL55_14345 PF07876 Stress responsive A/B Barrel Domain AVL55_14350 PF08921 Domain of unknown function (DUF1904) AVL55_14355 PF03929 AVL55_14355 AVL55_14365 PF00593 TonB dependent receptor AVL55_14365 PF07715 TonB-dependent Receptor Plug Domain AVL55_14370 PF01594 AVL55_14370 AVL55_14375 PF00072 Response regulator receiver domain AVL55_14380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVL55_14380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AVL55_14385 PF03747 ADP-ribosylglycohydrolase AVL55_14390 PF01764 Lipase (class 3) AVL55_14395 PF01527 Transposase AVL55_14405 PF04982 AVL55_14405 AVL55_14410 PF00158 Sigma-54 interaction domain AVL55_14410 PF01590 GAF domain AVL55_14415 PF00042 Globin AVL55_14415 PF00175 Oxidoreductase NAD-binding domain AVL55_14415 PF00970 Oxidoreductase FAD-binding domain AVL55_14420 PF01272 Transcription elongation factor, GreA/GreB, C-term AVL55_14425 PF00593 TonB dependent receptor AVL55_14425 PF07715 TonB-dependent Receptor Plug Domain AVL55_14430 PF00563 EAL domain AVL55_14430 PF00990 GGDEF domain AVL55_14435 PF00265 Thymidine kinase AVL55_14445 PF00356 Bacterial regulatory proteins, lacI family AVL55_14445 PF13377 Periplasmic binding protein-like domain AVL55_14450 PF14681 Uracil phosphoribosyltransferase AVL55_14455 PF03283 AVL55_14455 AVL55_14460 PF13744 Helix-turn-helix domain AVL55_14470 PF01926 50S ribosome-binding GTPase AVL55_14475 PF00588 SpoU rRNA Methylase family AVL55_14475 PF08032 RNA 2'-O ribose methyltransferase substrate binding AVL55_14490 PF01276 Orn/Lys/Arg decarboxylase, major domain AVL55_14490 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AVL55_14490 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AVL55_14505 PF00378 Enoyl-CoA hydratase/isomerase family AVL55_14510 PF06127 AVL55_14510 AVL55_14515 PF03724 META domain AVL55_14515 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme AVL55_14520 PF00171 Aldehyde dehydrogenase family AVL55_14525 PF00732 GMC oxidoreductase AVL55_14525 PF05199 GMC oxidoreductase AVL55_14535 PF09694 AVL55_14535 AVL55_14545 PF00557 Metallopeptidase family M24 AVL55_14565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_14565 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_14570 PF02635 DsrE/DsrF-like family AVL55_14575 PF03022 Major royal jelly protein AVL55_14580 PF13590 Domain of unknown function (DUF4136) AVL55_14590 PF01295 AVL55_14590 AVL55_14590 PF12633 AVL55_14590 AVL55_14595 PF03965 Penicillinase repressor AVL55_14600 PF03544 Gram-negative bacterial TonB protein C-terminal AVL55_14600 PF05569 BlaR1 peptidase M56 AVL55_14605 PF11075 AVL55_14605 AVL55_14610 PF05359 AVL55_14610 AVL55_14615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL55_14620 PF07308 AVL55_14620 AVL55_14625 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL55_14625 PF01799 [2Fe-2S] binding domain AVL55_14630 PF00941 FAD binding domain in molybdopterin dehydrogenase AVL55_14630 PF03450 CO dehydrogenase flavoprotein C-terminal domain AVL55_14635 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL55_14635 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVL55_14640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVL55_14645 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_14650 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_14655 PF00005 ABC transporter AVL55_14660 PF00106 short chain dehydrogenase AVL55_14665 PF00106 short chain dehydrogenase AVL55_14670 PF01965 DJ-1/PfpI family AVL55_14675 PF03631 AVL55_14675 AVL55_14680 PF07690 Major Facilitator Superfamily AVL55_14690 PF04203 Sortase family AVL55_14695 PF00873 AcrB/AcrD/AcrF family AVL55_14710 PF00962 Adenosine/AMP deaminase AVL55_14720 PF00578 AhpC/TSA family AVL55_14725 PF07152 YaeQ protein AVL55_14740 PF13650 Aspartyl protease AVL55_14750 PF00881 Nitroreductase family AVL55_14790 PF03235 AVL55_14790 AVL55_14795 PF12476 AVL55_14795 AVL55_14795 PF13175 AAA ATPase domain AVL55_14800 PF05973 AVL55_14800 AVL55_14805 PF07690 Major Facilitator Superfamily AVL55_14810 PF01432 Peptidase family M3 AVL55_14815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_14815 PF03466 LysR substrate binding domain AVL55_14820 PF00892 EamA-like transporter family AVL55_14830 PF00583 Acetyltransferase (GNAT) family AVL55_14830 PF12802 MarR family AVL55_14835 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AVL55_14835 PF06827 Zinc finger found in FPG and IleRS AVL55_14835 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AVL55_14840 PF00107 Zinc-binding dehydrogenase AVL55_14850 PF00270 DEAD/DEAH box helicase AVL55_14850 PF00271 Helicase conserved C-terminal domain AVL55_14850 PF16124 AVL55_14850 AVL55_14855 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVL55_14870 PF13166 AVL55_14870 AVL55_14875 PF00753 Metallo-beta-lactamase superfamily AVL55_14890 PF00144 Beta-lactamase AVL55_14895 PF02492 CobW/HypB/UreG, nucleotide-binding domain AVL55_14900 PF01730 UreF AVL55_14905 PF02814 UreE urease accessory protein, N-terminal domain AVL55_14905 PF05194 UreE urease accessory protein, C-terminal domain AVL55_14910 PF00449 Urease alpha-subunit, N-terminal domain AVL55_14910 PF01979 Amidohydrolase family AVL55_14915 PF00699 Urease beta subunit AVL55_14920 PF00547 Urease, gamma subunit AVL55_14925 PF01774 UreD urease accessory protein AVL55_14930 PF00005 ABC transporter AVL55_14935 PF00005 ABC transporter AVL55_14935 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVL55_14940 PF02653 AVL55_14940 AVL55_14945 PF02653 AVL55_14945 AVL55_14950 PF13433 Periplasmic binding protein domain AVL55_14955 PF07642 AVL55_14955 AVL55_14960 PF00072 Response regulator receiver domain AVL55_14960 PF00512 His Kinase A (phospho-acceptor) domain AVL55_14960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_14965 PF00072 Response regulator receiver domain AVL55_14965 PF00196 Bacterial regulatory proteins, luxR family AVL55_14970 PF02661 Fic/DOC family AVL55_14975 PF02347 Glycine cleavage system P-protein AVL55_14980 PF01597 Glycine cleavage H-protein AVL55_14985 PF01571 Aminomethyltransferase folate-binding domain AVL55_14985 PF08669 Glycine cleavage T-protein C-terminal barrel domain AVL55_14990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_14990 PF03466 LysR substrate binding domain AVL55_15000 PF00557 Metallopeptidase family M24 AVL55_15000 PF01321 Creatinase/Prolidase N-terminal domain AVL55_15015 PF01494 FAD binding domain AVL55_15020 PF01494 FAD binding domain AVL55_15025 PF00557 Metallopeptidase family M24 AVL55_15025 PF05195 Aminopeptidase P, N-terminal domain AVL55_15030 PF03695 Uncharacterised protein family (UPF0149) AVL55_15040 PF00294 pfkB family carbohydrate kinase AVL55_15045 PF01156 Inosine-uridine preferring nucleoside hydrolase AVL55_15050 PF00072 Response regulator receiver domain AVL55_15050 PF00512 His Kinase A (phospho-acceptor) domain AVL55_15050 PF01590 GAF domain AVL55_15050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_15060 PF01812 5-formyltetrahydrofolate cyclo-ligase family AVL55_15065 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AVL55_15070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVL55_15070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL55_15075 PF04338 Protein of unknown function, DUF481 AVL55_15080 PF04338 Protein of unknown function, DUF481 AVL55_15085 PF08668 HDOD domain AVL55_15090 PF06945 AVL55_15090 AVL55_15095 PF04402 Protein of unknown function (DUF541) AVL55_15100 PF00873 AcrB/AcrD/AcrF family AVL55_15105 PF16576 AVL55_15105 AVL55_15110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_15110 PF03466 LysR substrate binding domain AVL55_15115 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVL55_15115 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_15120 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AVL55_15120 PF00364 Biotin-requiring enzyme AVL55_15120 PF02817 e3 binding domain AVL55_15125 PF00456 Transketolase, thiamine diphosphate binding domain AVL55_15130 PF00392 Bacterial regulatory proteins, gntR family AVL55_15130 PF07729 FCD domain AVL55_15135 PF17113 AVL55_15135 AVL55_15140 PF01510 N-acetylmuramoyl-L-alanine amidase AVL55_15145 PF13975 AVL55_15145 AVL55_15150 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AVL55_15150 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AVL55_15155 PF00114 Pilin (bacterial filament) AVL55_15155 PF07963 Prokaryotic N-terminal methylation motif AVL55_15160 PF00482 Type II secretion system (T2SS), protein F AVL55_15165 PF01478 Type IV leader peptidase family AVL55_15165 PF06750 AVL55_15165 AVL55_15170 PF01121 Dephospho-CoA kinase AVL55_15175 PF07072 Protein of unknown function (DUF1342) AVL55_15180 PF03884 Domain of unknown function (DUF329) AVL55_15185 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AVL55_15190 PF00293 NUDIX domain AVL55_15195 PF01043 SecA preprotein cross-linking domain AVL55_15195 PF02810 SEC-C motif AVL55_15195 PF07516 SecA Wing and Scaffold domain AVL55_15195 PF07517 SecA DEAD-like domain AVL55_15200 PF01551 Peptidase family M23 AVL55_15205 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AVL55_15210 PF00091 Tubulin/FtsZ family, GTPase domain AVL55_15210 PF12327 FtsZ family, C-terminal domain AVL55_15215 PF02491 SHS2 domain inserted in FTSA AVL55_15215 PF14450 Cell division protein FtsA AVL55_15220 PF03799 Cell division protein FtsQ AVL55_15220 PF08478 POTRA domain, FtsQ-type AVL55_15225 PF01820 D-ala D-ala ligase N-terminus AVL55_15225 PF07478 D-ala D-ala ligase C-terminus AVL55_15230 PF01225 Mur ligase family, catalytic domain AVL55_15230 PF02875 Mur ligase family, glutamate ligase domain AVL55_15230 PF08245 Mur ligase middle domain AVL55_15235 PF03033 Glycosyltransferase family 28 N-terminal domain AVL55_15235 PF04101 Glycosyltransferase family 28 C-terminal domain AVL55_15240 PF01098 AVL55_15240 AVL55_15245 PF02875 Mur ligase family, glutamate ligase domain AVL55_15245 PF08245 Mur ligase middle domain AVL55_15250 PF00953 Glycosyl transferase family 4 AVL55_15250 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AVL55_15255 PF01225 Mur ligase family, catalytic domain AVL55_15255 PF02875 Mur ligase family, glutamate ligase domain AVL55_15255 PF08245 Mur ligase middle domain AVL55_15260 PF01225 Mur ligase family, catalytic domain AVL55_15260 PF02875 Mur ligase family, glutamate ligase domain AVL55_15260 PF08245 Mur ligase middle domain AVL55_15265 PF00905 Penicillin binding protein transpeptidase domain AVL55_15265 PF03717 Penicillin-binding Protein dimerisation domain AVL55_15270 PF04999 AVL55_15270 AVL55_15275 PF01795 MraW methylase family AVL55_15280 PF02381 MraZ protein AVL55_15290 PF07277 AVL55_15290 AVL55_15295 PF01244 Membrane dipeptidase (Peptidase family M19) AVL55_15300 PF00873 AcrB/AcrD/AcrF family AVL55_15305 PF11604 Copper binding periplasmic protein CusF AVL55_15305 PF16576 AVL55_15305 AVL55_15310 PF02321 Outer membrane efflux protein AVL55_15320 PF12146 Putative lysophospholipase AVL55_15325 PF00462 Glutaredoxin AVL55_15325 PF08534 Redoxin AVL55_15330 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AVL55_15340 PF00990 GGDEF domain AVL55_15340 PF13424 Tetratricopeptide repeat AVL55_15350 PF00072 Response regulator receiver domain AVL55_15350 PF00158 Sigma-54 interaction domain AVL55_15350 PF02954 Bacterial regulatory protein, Fis family AVL55_15355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_15360 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AVL55_15360 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AVL55_15370 PF01435 Peptidase family M48 AVL55_15375 PF00924 Mechanosensitive ion channel AVL55_15380 PF04452 RNA methyltransferase AVL55_15385 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AVL55_15385 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AVL55_15390 PF02622 Uncharacterized ACR, COG1678 AVL55_15395 PF03652 Uncharacterised protein family (UPF0081) AVL55_15400 PF09413 Domain of unknown function (DUF2007) AVL55_15405 PF00437 Type II/IV secretion system protein AVL55_15410 PF00437 Type II/IV secretion system protein AVL55_15415 PF01168 Alanine racemase, N-terminal domain AVL55_15420 PF03807 NADP oxidoreductase coenzyme F420-dependent AVL55_15420 PF14748 Pyrroline-5-carboxylate reductase dimerisation AVL55_15425 PF02325 AVL55_15425 AVL55_15430 PF14467 Domain of unknown function (DUF4426) AVL55_15435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL55_15435 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_15450 PF00043 Glutathione S-transferase, C-terminal domain AVL55_15450 PF02798 Glutathione S-transferase, N-terminal domain AVL55_15455 PF00080 Copper/zinc superoxide dismutase (SODC) AVL55_15460 PF02566 OsmC-like protein AVL55_15465 PF01625 Peptide methionine sulfoxide reductase AVL55_15470 PF05437 AVL55_15470 AVL55_15475 PF03591 AVL55_15475 AVL55_15480 PF01381 Helix-turn-helix AVL55_15480 PF07883 Cupin domain AVL55_15485 PF07690 Major Facilitator Superfamily AVL55_15490 PF00076 RNA recognition motif AVL55_15495 PF03883 AVL55_15495 AVL55_15505 PF00923 Transaldolase AVL55_15510 PF00342 Phosphoglucose isomerase AVL55_15515 PF03167 Uracil DNA glycosylase superfamily AVL55_15520 PF00291 Pyridoxal-phosphate dependent enzyme AVL55_15520 PF14821 Threonine synthase N terminus AVL55_15525 PF00288 GHMP kinases N terminal domain AVL55_15525 PF08544 GHMP kinases C terminal AVL55_15530 PF00696 Amino acid kinase family AVL55_15530 PF00742 Homoserine dehydrogenase AVL55_15530 PF01842 ACT domain AVL55_15530 PF03447 Homoserine dehydrogenase, NAD binding domain AVL55_15535 PF00005 ABC transporter AVL55_15540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_15540 PF03466 LysR substrate binding domain AVL55_15545 PF00107 Zinc-binding dehydrogenase AVL55_15545 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_15555 PF01022 Bacterial regulatory protein, arsR family AVL55_15560 PF01451 Low molecular weight phosphotyrosine protein phosphatase AVL55_15565 PF03358 NADPH-dependent FMN reductase AVL55_15570 PF01758 Sodium Bile acid symporter family AVL55_15575 PF00072 Response regulator receiver domain AVL55_15580 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AVL55_15585 PF00072 Response regulator receiver domain AVL55_15585 PF00486 Transcriptional regulatory protein, C terminal AVL55_15590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_15595 PF02502 Ribose/Galactose Isomerase AVL55_15595 PF12408 Ribose-5-phosphate isomerase AVL55_15600 PF12915 AVL55_15600 AVL55_15605 PF16036 AVL55_15605 AVL55_15610 PF00291 Pyridoxal-phosphate dependent enzyme AVL55_15615 PF14110 AVL55_15615 AVL55_15620 PF04116 AVL55_15620 AVL55_15625 PF10604 Polyketide cyclase / dehydrase and lipid transport AVL55_15630 PF12625 AVL55_15630 AVL55_15630 PF12833 Helix-turn-helix domain AVL55_15640 PF03435 Saccharopine dehydrogenase AVL55_15640 PF16653 AVL55_15640 AVL55_15645 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AVL55_15650 PF11316 AVL55_15650 AVL55_15660 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVL55_15665 PF04348 LppC putative lipoprotein AVL55_15670 PF02021 Uncharacterised protein family UPF0102 AVL55_15675 PF00534 Glycosyl transferases group 1 AVL55_15680 PF13580 SIS domain AVL55_15685 PF04972 BON domain AVL55_15690 PF07690 Major Facilitator Superfamily AVL55_15700 PF00893 Small Multidrug Resistance protein AVL55_15705 PF07730 Histidine kinase AVL55_15710 PF00072 Response regulator receiver domain AVL55_15710 PF00196 Bacterial regulatory proteins, luxR family AVL55_15725 PF00593 TonB dependent receptor AVL55_15725 PF07715 TonB-dependent Receptor Plug Domain AVL55_15730 PF00392 Bacterial regulatory proteins, gntR family AVL55_15730 PF07729 FCD domain AVL55_15735 PF13714 Phosphoenolpyruvate phosphomutase AVL55_15740 PF00285 Citrate synthase AVL55_15745 PF00330 Aconitase family (aconitate hydratase) AVL55_15745 PF00694 Aconitase C-terminal domain AVL55_15750 PF04303 PrpF protein AVL55_15755 PF00072 Response regulator receiver domain AVL55_15755 PF00990 GGDEF domain AVL55_15760 PF00474 Sodium:solute symporter family AVL55_15765 PF03703 AVL55_15765 AVL55_15770 PF03703 AVL55_15770 AVL55_15775 PF00072 Response regulator receiver domain AVL55_15775 PF00512 His Kinase A (phospho-acceptor) domain AVL55_15775 PF01627 Hpt domain AVL55_15775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_15775 PF08448 PAS fold AVL55_15785 PF00310 Glutamine amidotransferases class-II AVL55_15785 PF01493 GXGXG motif AVL55_15785 PF01645 Conserved region in glutamate synthase AVL55_15785 PF04898 Glutamate synthase central domain AVL55_15790 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_15790 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AVL55_15800 PF10881 AVL55_15800 AVL55_15805 PF01048 Phosphorylase superfamily AVL55_15810 PF03186 AVL55_15810 AVL55_15815 PF01497 Periplasmic binding protein AVL55_15820 PF00581 Rhodanese-like domain AVL55_15825 PF11026 AVL55_15825 AVL55_15835 PF01266 FAD dependent oxidoreductase AVL55_15840 PF07237 Protein of unknown function (DUF1428) AVL55_15850 PF01609 Transposase DDE domain AVL55_15850 PF13006 AVL55_15850 AVL55_15855 PF00579 tRNA synthetases class I (W and Y) AVL55_15855 PF13275 S4 domain AVL55_15860 PF01551 Peptidase family M23 AVL55_15860 PF04225 Opacity-associated protein A LysM-like domain AVL55_15860 PF08525 AVL55_15860 AVL55_15865 PF03702 Uncharacterised protein family (UPF0075) AVL55_15870 PF03600 Citrate transporter AVL55_15875 PF07690 Major Facilitator Superfamily AVL55_15880 PF04966 Carbohydrate-selective porin, OprB family AVL55_15885 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL55_15890 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AVL55_15895 PF01053 Cys/Met metabolism PLP-dependent enzyme AVL55_15900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL55_15905 PF13417 Glutathione S-transferase, N-terminal domain AVL55_15910 PF01521 Iron-sulphur cluster biosynthesis AVL55_15915 PF03976 Polyphosphate kinase 2 (PPK2) AVL55_15920 PF03776 Septum formation topological specificity factor MinE AVL55_15925 PF13614 AAA domain AVL55_15930 PF03775 Septum formation inhibitor MinC, C-terminal domain AVL55_15930 PF05209 Septum formation inhibitor MinC, N-terminal domain AVL55_15935 PF00206 Lyase AVL55_15935 PF10415 Fumarase C C-terminus AVL55_15945 PF00127 Copper binding proteins, plastocyanin/azurin family AVL55_15950 PF11449 AVL55_15950 AVL55_15960 PF00654 Voltage gated chloride channel AVL55_15965 PF03653 AVL55_15965 AVL55_15975 PF03695 Uncharacterised protein family (UPF0149) AVL55_15980 PF01566 AVL55_15980 AVL55_15985 PF00155 Aminotransferase class I and II AVL55_15990 PF00072 Response regulator receiver domain AVL55_15995 PF00009 Elongation factor Tu GTP binding domain AVL55_15995 PF00679 Elongation factor G C-terminus AVL55_15995 PF03144 Elongation factor Tu domain 2 AVL55_16000 PF00120 Glutamine synthetase, catalytic domain AVL55_16000 PF03951 Glutamine synthetase, beta-Grasp domain AVL55_16010 PF00512 His Kinase A (phospho-acceptor) domain AVL55_16010 PF00989 PAS fold AVL55_16010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_16015 PF00072 Response regulator receiver domain AVL55_16015 PF00158 Sigma-54 interaction domain AVL55_16015 PF02954 Bacterial regulatory protein, Fis family AVL55_16020 PF01627 Hpt domain AVL55_16020 PF13487 HD domain AVL55_16025 PF01553 Acyltransferase AVL55_16030 PF06877 Regulator of ribonuclease activity B AVL55_16045 PF01145 SPFH domain / Band 7 family AVL55_16050 PF13416 Bacterial extracellular solute-binding protein AVL55_16055 PF00072 Response regulator receiver domain AVL55_16055 PF00512 His Kinase A (phospho-acceptor) domain AVL55_16055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_16060 PF00133 tRNA synthetases class I (I, L, M and V) AVL55_16060 PF08264 Anticodon-binding domain of tRNA AVL55_16060 PF10458 Valyl tRNA synthetase tRNA binding arm AVL55_16065 PF04364 DNA polymerase III chi subunit, HolC AVL55_16070 PF00883 Cytosol aminopeptidase family, catalytic domain AVL55_16070 PF02789 Cytosol aminopeptidase family, N-terminal domain AVL55_16075 PF03739 AVL55_16075 AVL55_16080 PF03739 AVL55_16080 AVL55_16085 PF06271 AVL55_16085 AVL55_16090 PF07715 TonB-dependent Receptor Plug Domain AVL55_16100 PF04542 Sigma-70 region 2 AVL55_16100 PF08281 Sigma-70, region 4 AVL55_16105 PF10099 AVL55_16105 AVL55_16110 PF14224 AVL55_16110 AVL55_16125 PF13795 AVL55_16125 AVL55_16140 PF11215 AVL55_16140 AVL55_16145 PF00072 Response regulator receiver domain AVL55_16145 PF00360 Phytochrome region AVL55_16145 PF00512 His Kinase A (phospho-acceptor) domain AVL55_16145 PF01590 GAF domain AVL55_16145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_16145 PF08446 PAS fold AVL55_16150 PF07995 Glucose / Sorbosone dehydrogenase AVL55_16155 PF00593 TonB dependent receptor AVL55_16155 PF07715 TonB-dependent Receptor Plug Domain AVL55_16155 PF13620 Carboxypeptidase regulatory-like domain AVL55_16160 PF00072 Response regulator receiver domain AVL55_16160 PF00486 Transcriptional regulatory protein, C terminal AVL55_16165 PF00512 His Kinase A (phospho-acceptor) domain AVL55_16170 PF07804 HipA-like C-terminal domain AVL55_16170 PF13657 HipA N-terminal domain AVL55_16175 PF01381 Helix-turn-helix AVL55_16190 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AVL55_16190 PF04851 Type III restriction enzyme, res subunit AVL55_16190 PF12008 Type I restriction and modification enzyme - subunit R C terminal AVL55_16195 PF01420 Type I restriction modification DNA specificity domain AVL55_16200 PF02384 N-6 DNA Methylase AVL55_16200 PF12161 HsdM N-terminal domain AVL55_16210 PF13280 AVL55_16210 AVL55_16215 PF13304 AAA domain AVL55_16225 PF01693 Caulimovirus viroplasmin AVL55_16230 PF10980 Protein of unknown function (DUF2787) AVL55_16240 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_16245 PF00589 Phage integrase family AVL55_16260 PF01381 Helix-turn-helix AVL55_16260 PF06114 Domain of unknown function (DUF955) AVL55_16265 PF01850 PIN domain AVL55_16275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_16280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_16280 PF02743 Cache domain AVL55_16285 PF00274 Fructose-bisphosphate aldolase class-I AVL55_16290 PF13609 Gram-negative porin AVL55_16295 PF01547 Bacterial extracellular solute-binding protein AVL55_16300 PF09928 AVL55_16300 AVL55_16305 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_16310 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_16315 PF00005 ABC transporter AVL55_16320 PF00005 ABC transporter AVL55_16325 PF00158 Sigma-54 interaction domain AVL55_16325 PF02954 Bacterial regulatory protein, Fis family AVL55_16330 PF00121 Triosephosphate isomerase AVL55_16335 PF00316 Fructose-1-6-bisphosphatase AVL55_16340 PF00316 Fructose-1-6-bisphosphatase AVL55_16345 PF01266 FAD dependent oxidoreductase AVL55_16345 PF16901 AVL55_16345 AVL55_16350 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AVL55_16350 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AVL55_16355 PF00005 ABC transporter AVL55_16360 PF01638 HxlR-like helix-turn-helix AVL55_16365 PF02627 Carboxymuconolactone decarboxylase family AVL55_16370 PF03050 AVL55_16370 AVL55_16370 PF13005 AVL55_16370 AVL55_16370 PF13007 AVL55_16370 AVL55_16370 PF13817 AVL55_16370 AVL55_16375 PF05717 AVL55_16375 AVL55_16400 PF00072 Response regulator receiver domain AVL55_16400 PF00196 Bacterial regulatory proteins, luxR family AVL55_16405 PF00072 Response regulator receiver domain AVL55_16405 PF00512 His Kinase A (phospho-acceptor) domain AVL55_16405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_16405 PF08448 PAS fold AVL55_16405 PF13188 PAS domain AVL55_16410 PF08495 AVL55_16410 AVL55_16410 PF10442 AVL55_16410 AVL55_16415 PF12801 AVL55_16415 AVL55_16420 PF00171 Aldehyde dehydrogenase family AVL55_16425 PF00072 Response regulator receiver domain AVL55_16425 PF00196 Bacterial regulatory proteins, luxR family AVL55_16430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_16430 PF07730 Histidine kinase AVL55_16435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_16435 PF08448 PAS fold AVL55_16435 PF13426 PAS domain AVL55_16440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_16440 PF03466 LysR substrate binding domain AVL55_16445 PF00171 Aldehyde dehydrogenase family AVL55_16450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVL55_16450 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AVL55_16455 PF02028 BCCT family transporter AVL55_16460 PF04542 Sigma-70 region 2 AVL55_16460 PF08281 Sigma-70, region 4 AVL55_16465 PF04773 FecR protein AVL55_16465 PF16220 AVL55_16465 AVL55_16470 PF00593 TonB dependent receptor AVL55_16470 PF07660 Secretin and TonB N terminus short domain AVL55_16470 PF07715 TonB-dependent Receptor Plug Domain AVL55_16475 PF00149 Calcineurin-like phosphoesterase AVL55_16475 PF16656 AVL55_16475 AVL55_16480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_16480 PF03466 LysR substrate binding domain AVL55_16485 PF01070 FMN-dependent dehydrogenase AVL55_16490 PF01565 FAD binding domain AVL55_16490 PF09330 D-lactate dehydrogenase, membrane binding AVL55_16495 PF00196 Bacterial regulatory proteins, luxR family AVL55_16500 PF03783 Curli production assembly/transport component CsgG AVL55_16505 PF10614 AVL55_16505 AVL55_16510 PF10627 AVL55_16510 AVL55_16515 PF07012 AVL55_16515 AVL55_16525 PF00082 Subtilase family AVL55_16525 PF00801 PKD domain AVL55_16525 PF01483 Proprotein convertase P-domain AVL55_16530 PF00072 Response regulator receiver domain AVL55_16530 PF00196 Bacterial regulatory proteins, luxR family AVL55_16535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_16535 PF05231 AVL55_16535 AVL55_16535 PF07730 Histidine kinase AVL55_16540 PF13899 Thioredoxin-like AVL55_16545 PF00270 DEAD/DEAH box helicase AVL55_16545 PF00271 Helicase conserved C-terminal domain AVL55_16555 PF01370 NAD dependent epimerase/dehydratase family AVL55_16555 PF07884 Vitamin K epoxide reductase family AVL55_16560 PF00355 Rieske [2Fe-2S] domain AVL55_16560 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_16560 PF14759 Reductase C-terminal AVL55_16565 PF09678 AVL55_16565 AVL55_16575 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVL55_16580 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AVL55_16585 PF09990 AVL55_16585 AVL55_16590 PF03653 AVL55_16590 AVL55_16595 PF00924 Mechanosensitive ion channel AVL55_16605 PF00141 Peroxidase AVL55_16610 PF13505 Outer membrane protein beta-barrel domain AVL55_16615 PF00614 Phospholipase D Active site motif AVL55_16615 PF09335 AVL55_16615 AVL55_16615 PF13091 PLD-like domain AVL55_16620 PF03372 Endonuclease/Exonuclease/phosphatase family AVL55_16625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_16625 PF03466 LysR substrate binding domain AVL55_16630 PF00593 TonB dependent receptor AVL55_16630 PF07715 TonB-dependent Receptor Plug Domain AVL55_16635 PF01925 AVL55_16635 AVL55_16640 PF00155 Aminotransferase class I and II AVL55_16650 PF00753 Metallo-beta-lactamase superfamily AVL55_16655 PF00136 DNA polymerase family B AVL55_16655 PF03104 DNA polymerase family B, exonuclease domain AVL55_16660 PF13202 EF hand AVL55_16665 PF00501 AMP-binding enzyme AVL55_16665 PF13193 AMP-binding enzyme C-terminal domain AVL55_16695 PF00076 RNA recognition motif AVL55_16705 PF05958 tRNA (Uracil-5-)-methyltransferase AVL55_16710 PF00440 Bacterial regulatory proteins, tetR family AVL55_16715 PF00487 AVL55_16715 AVL55_16720 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVL55_16720 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_16730 PF03167 Uracil DNA glycosylase superfamily AVL55_16735 PF00072 Response regulator receiver domain AVL55_16735 PF00563 EAL domain AVL55_16735 PF00990 GGDEF domain AVL55_16735 PF11849 AVL55_16735 AVL55_16745 PF01507 Phosphoadenosine phosphosulfate reductase family AVL55_16750 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AVL55_16750 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AVL55_16755 PF00175 Oxidoreductase NAD-binding domain AVL55_16755 PF00258 Flavodoxin AVL55_16755 PF00667 FAD binding domain AVL55_16765 PF10095 AVL55_16765 AVL55_16775 PF04024 AVL55_16775 AVL55_16780 PF04012 AVL55_16780 AVL55_16790 PF01207 Dihydrouridine synthase (Dus) AVL55_16795 PF09952 AVL55_16795 AVL55_16800 PF08843 Nucleotidyl transferase of unknown function (DUF1814) AVL55_16810 PF00691 OmpA family AVL55_16815 PF00071 Ras family AVL55_16820 PF00563 EAL domain AVL55_16820 PF00990 GGDEF domain AVL55_16825 PF00756 Putative esterase AVL55_16830 PF01553 Acyltransferase AVL55_16835 PF01553 Acyltransferase AVL55_16840 PF00924 Mechanosensitive ion channel AVL55_16850 PF11101 AVL55_16850 AVL55_16855 PF01370 NAD dependent epimerase/dehydratase family AVL55_16860 PF00209 Sodium:neurotransmitter symporter family AVL55_16865 PF00106 short chain dehydrogenase AVL55_16870 PF04134 AVL55_16870 AVL55_16875 PF01625 Peptide methionine sulfoxide reductase AVL55_16890 PF00258 Flavodoxin AVL55_16900 PF02472 Biopolymer transport protein ExbD/TolR AVL55_16910 PF10688 AVL55_16910 AVL55_16915 PF01170 Putative RNA methylase family UPF0020 AVL55_16920 PF13460 NADH(P)-binding AVL55_16925 PF00326 Prolyl oligopeptidase family AVL55_16925 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AVL55_16930 PF08000 Bacterial PH domain AVL55_16935 PF00563 EAL domain AVL55_16940 PF00291 Pyridoxal-phosphate dependent enzyme AVL55_16945 PF07969 Amidohydrolase family AVL55_16950 PF13520 Amino acid permease AVL55_16955 PF00753 Metallo-beta-lactamase superfamily AVL55_16965 PF13230 Glutamine amidotransferases class-II AVL55_16975 PF00027 Cyclic nucleotide-binding domain AVL55_16975 PF13545 Crp-like helix-turn-helix domain AVL55_16980 PF04116 AVL55_16980 AVL55_16985 PF09905 Uncharacterized conserved protein (DUF2132) AVL55_16990 PF07715 TonB-dependent Receptor Plug Domain AVL55_16995 PF01204 Trehalase AVL55_17000 PF02447 AVL55_17000 AVL55_17005 PF01202 Shikimate kinase AVL55_17010 PF00356 Bacterial regulatory proteins, lacI family AVL55_17010 PF13377 Periplasmic binding protein-like domain AVL55_17015 PF00753 Metallo-beta-lactamase superfamily AVL55_17020 PF07866 Protein of unknown function (DUF1653) AVL55_17025 PF00817 impB/mucB/samB family AVL55_17025 PF11798 IMS family HHH motif AVL55_17025 PF11799 impB/mucB/samB family C-terminal domain AVL55_17035 PF04400 AVL55_17035 AVL55_17040 PF02424 ApbE family AVL55_17045 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL55_17045 PF00175 Oxidoreductase NAD-binding domain AVL55_17045 PF00970 Oxidoreductase FAD-binding domain AVL55_17050 PF02508 AVL55_17050 AVL55_17055 PF02508 AVL55_17055 AVL55_17060 PF04205 FMN-binding domain AVL55_17065 PF03116 AVL55_17065 AVL55_17070 PF05896 AVL55_17070 AVL55_17070 PF11973 AVL55_17070 AVL55_17075 PF07055 Enoyl reductase FAD binding domain AVL55_17075 PF12241 Trans-2-enoyl-CoA reductase catalytic region AVL55_17075 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AVL55_17080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL55_17080 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AVL55_17085 PF00311 Phosphoenolpyruvate carboxylase AVL55_17090 PF00056 lactate/malate dehydrogenase, NAD binding domain AVL55_17090 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AVL55_17095 PF01316 Arginine repressor, DNA binding domain AVL55_17095 PF02863 Arginine repressor, C-terminal domain AVL55_17100 PF01965 DJ-1/PfpI family AVL55_17105 PF00593 TonB dependent receptor AVL55_17105 PF13620 Carboxypeptidase regulatory-like domain AVL55_17110 PF07715 TonB-dependent Receptor Plug Domain AVL55_17110 PF13620 Carboxypeptidase regulatory-like domain AVL55_17115 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AVL55_17125 PF00485 Phosphoribulokinase / Uridine kinase family AVL55_17130 PF01773 Na+ dependent nucleoside transporter N-terminus AVL55_17130 PF07662 Na+ dependent nucleoside transporter C-terminus AVL55_17130 PF07670 Nucleoside recognition AVL55_17135 PF03171 2OG-Fe(II) oxygenase superfamily AVL55_17135 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AVL55_17140 PF13181 Tetratricopeptide repeat AVL55_17140 PF14559 Tetratricopeptide repeat AVL55_17145 PF02469 Fasciclin domain AVL55_17150 PF01124 MAPEG family AVL55_17155 PF00072 Response regulator receiver domain AVL55_17155 PF00990 GGDEF domain AVL55_17160 PF00929 Exonuclease AVL55_17165 PF00571 CBS domain AVL55_17165 PF03445 AVL55_17165 AVL55_17165 PF10335 AVL55_17165 AVL55_17170 PF00474 Sodium:solute symporter family AVL55_17175 PF13937 AVL55_17175 AVL55_17180 PF00072 Response regulator receiver domain AVL55_17180 PF00512 His Kinase A (phospho-acceptor) domain AVL55_17180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_17180 PF12860 AVL55_17180 AVL55_17185 PF00924 Mechanosensitive ion channel AVL55_17190 PF08443 RimK-like ATP-grasp domain AVL55_17195 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AVL55_17200 PF05618 Putative ATP-dependant zinc protease AVL55_17210 PF00072 Response regulator receiver domain AVL55_17210 PF00196 Bacterial regulatory proteins, luxR family AVL55_17215 PF00501 AMP-binding enzyme AVL55_17215 PF13193 AMP-binding enzyme C-terminal domain AVL55_17215 PF16177 AVL55_17215 AVL55_17225 PF02321 Outer membrane efflux protein AVL55_17230 PF13437 HlyD family secretion protein AVL55_17230 PF13533 Biotin-lipoyl like AVL55_17235 PF00664 ABC transporter transmembrane region AVL55_17240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_17240 PF03466 LysR substrate binding domain AVL55_17245 PF01797 Transposase IS200 like AVL55_17250 PF03692 AVL55_17250 AVL55_17255 PF00483 Nucleotidyl transferase AVL55_17255 PF01050 Mannose-6-phosphate isomerase AVL55_17260 PF13704 AVL55_17260 AVL55_17265 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AVL55_17265 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AVL55_17265 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AVL55_17270 PF00535 Glycosyl transferase family 2 AVL55_17275 PF16363 AVL55_17275 AVL55_17280 PF04321 RmlD substrate binding domain AVL55_17285 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AVL55_17290 PF00483 Nucleotidyl transferase AVL55_17305 PF04577 AVL55_17305 AVL55_17315 PF13469 Sulfotransferase family AVL55_17320 PF00534 Glycosyl transferases group 1 AVL55_17320 PF13439 Glycosyltransferase Family 4 AVL55_17325 PF00535 Glycosyl transferase family 2 AVL55_17330 PF00535 Glycosyl transferase family 2 AVL55_17335 PF00534 Glycosyl transferases group 1 AVL55_17335 PF13439 Glycosyltransferase Family 4 AVL55_17340 PF13469 Sulfotransferase family AVL55_17345 PF16822 AVL55_17345 AVL55_17350 PF00777 Glycosyltransferase family 29 (sialyltransferase) AVL55_17360 PF00682 HMGL-like AVL55_17365 PF02348 Cytidylyltransferase AVL55_17370 PF13419 Haloacid dehalogenase-like hydrolase AVL55_17380 PF02412 Thrombospondin type 3 repeat AVL55_17380 PF07705 CARDB AVL55_17410 PF13620 Carboxypeptidase regulatory-like domain AVL55_17415 PF00082 Subtilase family AVL55_17425 PF13704 AVL55_17425 AVL55_17430 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella AVL55_17435 PF12799 Leucine Rich repeats (2 copies) AVL55_17435 PF13620 Carboxypeptidase regulatory-like domain AVL55_17450 PF00535 Glycosyl transferase family 2 AVL55_17460 PF13704 AVL55_17460 AVL55_17465 PF05045 AVL55_17465 AVL55_17480 PF00669 Bacterial flagellin N-terminal helical region AVL55_17480 PF00700 Bacterial flagellin C-terminal helical region AVL55_17485 PF01196 Ribosomal protein L17 AVL55_17490 PF01000 RNA polymerase Rpb3/RpoA insert domain AVL55_17490 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AVL55_17490 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AVL55_17495 PF00163 Ribosomal protein S4/S9 N-terminal domain AVL55_17495 PF01479 S4 domain AVL55_17500 PF00411 Ribosomal protein S11 AVL55_17505 PF00416 Ribosomal protein S13/S18 AVL55_17510 PF00444 Ribosomal protein L36 AVL55_17515 PF00344 SecY translocase AVL55_17520 PF00828 Ribosomal protein L18e/L15 AVL55_17525 PF00327 Ribosomal protein L30p/L7e AVL55_17530 PF00333 Ribosomal protein S5, N-terminal domain AVL55_17530 PF03719 Ribosomal protein S5, C-terminal domain AVL55_17535 PF00861 Ribosomal L18p/L5e family AVL55_17540 PF00347 Ribosomal protein L6 AVL55_17545 PF00410 Ribosomal protein S8 AVL55_17550 PF00253 Ribosomal protein S14p/S29e AVL55_17555 PF00281 Ribosomal protein L5 AVL55_17555 PF00673 ribosomal L5P family C-terminus AVL55_17560 PF00467 KOW motif AVL55_17560 PF17136 AVL55_17560 AVL55_17565 PF00238 Ribosomal protein L14p/L23e AVL55_17575 PF00082 Subtilase family AVL55_17575 PF04151 Bacterial pre-peptidase C-terminal domain AVL55_17580 PF00588 SpoU rRNA Methylase family AVL55_17580 PF08032 RNA 2'-O ribose methyltransferase substrate binding AVL55_17585 PF00575 S1 RNA binding domain AVL55_17585 PF00773 RNB domain AVL55_17585 PF08206 Ribonuclease B OB domain AVL55_17590 PF09423 PhoD-like phosphatase AVL55_17590 PF16655 AVL55_17590 AVL55_17595 PF05016 Plasmid stabilisation system protein AVL55_17600 PF01402 Ribbon-helix-helix protein, copG family AVL55_17605 PF07715 TonB-dependent Receptor Plug Domain AVL55_17610 PF13670 AVL55_17610 AVL55_17615 PF01292 Prokaryotic cytochrome b561 AVL55_17625 PF06146 AVL55_17625 AVL55_17630 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AVL55_17635 PF00175 Oxidoreductase NAD-binding domain AVL55_17640 PF04389 Peptidase family M28 AVL55_17650 PF00072 Response regulator receiver domain AVL55_17650 PF00360 Phytochrome region AVL55_17650 PF00512 His Kinase A (phospho-acceptor) domain AVL55_17650 PF01590 GAF domain AVL55_17650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_17650 PF08446 PAS fold AVL55_17655 PF12802 MarR family AVL55_17660 PF01654 AVL55_17660 AVL55_17665 PF02322 AVL55_17665 AVL55_17670 PF01037 AsnC family AVL55_17670 PF13412 Winged helix-turn-helix DNA-binding AVL55_17680 PF00313 'Cold-shock' DNA-binding domain AVL55_17685 PF03109 AVL55_17685 AVL55_17690 PF02036 SCP-2 sterol transfer family AVL55_17695 PF01209 ubiE/COQ5 methyltransferase family AVL55_17700 PF03352 Methyladenine glycosylase AVL55_17705 PF01432 Peptidase family M3 AVL55_17710 PF00072 Response regulator receiver domain AVL55_17710 PF12728 Helix-turn-helix domain AVL55_17715 PF00072 Response regulator receiver domain AVL55_17725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVL55_17725 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_17730 PF00384 Molybdopterin oxidoreductase AVL55_17730 PF01568 Molydopterin dinucleotide binding domain AVL55_17730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AVL55_17735 PF00593 TonB dependent receptor AVL55_17735 PF07715 TonB-dependent Receptor Plug Domain AVL55_17740 PF03929 AVL55_17740 AVL55_17745 PF01979 Amidohydrolase family AVL55_17745 PF07676 WD40-like Beta Propeller Repeat AVL55_17765 PF03781 Sulfatase-modifying factor enzyme 1 AVL55_17765 PF08308 AVL55_17765 AVL55_17770 PF01618 AVL55_17770 AVL55_17775 PF13519 von Willebrand factor type A domain AVL55_17785 PF00368 Hydroxymethylglutaryl-coenzyme A reductase AVL55_17790 PF13437 HlyD family secretion protein AVL55_17795 PF00005 ABC transporter AVL55_17795 PF00664 ABC transporter transmembrane region AVL55_17795 PF03412 Peptidase C39 family AVL55_17800 PF00196 Bacterial regulatory proteins, luxR family AVL55_17810 PF08443 RimK-like ATP-grasp domain AVL55_17815 PF14076 AVL55_17815 AVL55_17820 PF01381 Helix-turn-helix AVL55_17825 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_17825 PF07724 AAA domain (Cdc48 subfamily) AVL55_17830 PF00227 Proteasome subunit AVL55_17845 PF05036 Sporulation related domain AVL55_17850 PF00270 DEAD/DEAH box helicase AVL55_17850 PF00271 Helicase conserved C-terminal domain AVL55_17855 PF01197 Ribosomal protein L31 AVL55_17865 PF00390 Malic enzyme, N-terminal domain AVL55_17865 PF03949 Malic enzyme, NAD binding domain AVL55_17870 PF01340 Met Apo-repressor, MetJ AVL55_17875 PF02219 Methylenetetrahydrofolate reductase AVL55_17880 PF03631 AVL55_17880 AVL55_17885 PF11172 AVL55_17885 AVL55_17895 PF00561 alpha/beta hydrolase fold AVL55_17900 PF02580 D-Tyr-tRNA(Tyr) deacylase AVL55_17905 PF00583 Acetyltransferase (GNAT) family AVL55_17905 PF09500 Putative thioesterase (yiiD_Cterm) AVL55_17910 PF00140 Sigma-70 factor, region 1 AVL55_17910 PF04542 Sigma-70 region 2 AVL55_17910 PF04545 Sigma-70, region 4 AVL55_17915 PF00563 EAL domain AVL55_17915 PF08668 HDOD domain AVL55_17920 PF00563 EAL domain AVL55_17920 PF08668 HDOD domain AVL55_17930 PF00005 ABC transporter AVL55_17935 PF00448 SRP54-type protein, GTPase domain AVL55_17945 PF03602 Conserved hypothetical protein 95 AVL55_17950 PF04222 Protein of unknown function (DUF416) AVL55_17955 PF01914 AVL55_17955 AVL55_17965 PF00883 Cytosol aminopeptidase family, catalytic domain AVL55_17965 PF12404 AVL55_17965 AVL55_17970 PF03749 Sugar fermentation stimulation protein AVL55_17975 PF01258 Prokaryotic dksA/traR C4-type zinc finger AVL55_17980 PF00749 tRNA synthetases class I (E and Q), catalytic domain AVL55_17985 PF01743 Poly A polymerase head domain AVL55_17985 PF12626 Polymerase A arginine-rich C-terminus AVL55_17985 PF12627 Probable RNA and SrmB- binding site of polymerase A AVL55_17990 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AVL55_17995 PF02548 Ketopantoate hydroxymethyltransferase AVL55_18000 PF02569 Pantoate-beta-alanine ligase AVL55_18005 PF00282 Pyridoxal-dependent decarboxylase conserved domain AVL55_18010 PF00563 EAL domain AVL55_18015 PF02390 Putative methyltransferase AVL55_18020 PF01061 AVL55_18020 AVL55_18025 PF00005 ABC transporter AVL55_18030 PF00072 Response regulator receiver domain AVL55_18030 PF00486 Transcriptional regulatory protein, C terminal AVL55_18035 PF00512 His Kinase A (phospho-acceptor) domain AVL55_18035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_18040 PF03544 Gram-negative bacterial TonB protein C-terminal AVL55_18045 PF00571 CBS domain AVL55_18045 PF01595 AVL55_18045 AVL55_18050 PF03773 AVL55_18050 AVL55_18055 PF02554 AVL55_18055 AVL55_18055 PF13722 AVL55_18055 AVL55_18060 PF00175 Oxidoreductase NAD-binding domain AVL55_18060 PF00258 Flavodoxin AVL55_18065 PF10670 AVL55_18065 AVL55_18070 PF10029 AVL55_18070 AVL55_18075 PF16357 AVL55_18075 AVL55_18080 PF11804 AVL55_18080 AVL55_18085 PF03929 AVL55_18085 AVL55_18095 PF13429 Tetratricopeptide repeat AVL55_18095 PF13432 Tetratricopeptide repeat AVL55_18095 PF14559 Tetratricopeptide repeat AVL55_18100 PF03544 Gram-negative bacterial TonB protein C-terminal AVL55_18105 PF02472 Biopolymer transport protein ExbD/TolR AVL55_18110 PF01618 AVL55_18110 AVL55_18115 PF01618 AVL55_18115 AVL55_18120 PF11932 AVL55_18120 AVL55_18125 PF00593 TonB dependent receptor AVL55_18125 PF07715 TonB-dependent Receptor Plug Domain AVL55_18130 PF01070 FMN-dependent dehydrogenase AVL55_18135 PF13640 2OG-Fe(II) oxygenase superfamily AVL55_18140 PF00593 TonB dependent receptor AVL55_18140 PF07715 TonB-dependent Receptor Plug Domain AVL55_18145 PF07859 alpha/beta hydrolase fold AVL55_18150 PF01963 AVL55_18150 AVL55_18155 PF00009 Elongation factor Tu GTP binding domain AVL55_18155 PF03143 Elongation factor Tu C-terminal domain AVL55_18155 PF03144 Elongation factor Tu domain 2 AVL55_18175 PF03309 Type III pantothenate kinase AVL55_18180 PF02237 Biotin protein ligase C terminal domain AVL55_18180 PF03099 Biotin/lipoate A/B protein ligase family AVL55_18180 PF08279 HTH domain AVL55_18185 PF01565 FAD binding domain AVL55_18185 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AVL55_18190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_18220 PF00009 Elongation factor Tu GTP binding domain AVL55_18220 PF00679 Elongation factor G C-terminus AVL55_18220 PF03144 Elongation factor Tu domain 2 AVL55_18220 PF03764 Elongation factor G, domain IV AVL55_18220 PF14492 Elongation Factor G, domain II AVL55_18225 PF00177 Ribosomal protein S7p/S5e AVL55_18230 PF00164 Ribosomal protein S12/S23 AVL55_18235 PF00623 RNA polymerase Rpb1, domain 2 AVL55_18235 PF04983 RNA polymerase Rpb1, domain 3 AVL55_18235 PF04997 RNA polymerase Rpb1, domain 1 AVL55_18235 PF04998 RNA polymerase Rpb1, domain 5 AVL55_18235 PF05000 RNA polymerase Rpb1, domain 4 AVL55_18240 PF00562 RNA polymerase Rpb2, domain 6 AVL55_18240 PF04560 RNA polymerase Rpb2, domain 7 AVL55_18240 PF04561 RNA polymerase Rpb2, domain 2 AVL55_18240 PF04563 RNA polymerase beta subunit AVL55_18240 PF04565 RNA polymerase Rpb2, domain 3 AVL55_18240 PF10385 RNA polymerase beta subunit external 1 domain AVL55_18245 PF00542 Ribosomal protein L7/L12 C-terminal domain AVL55_18245 PF16320 AVL55_18245 AVL55_18250 PF00466 Ribosomal protein L10 AVL55_18255 PF00687 Ribosomal protein L1p/L10e family AVL55_18260 PF00298 Ribosomal protein L11, RNA binding domain AVL55_18260 PF03946 Ribosomal protein L11, N-terminal domain AVL55_18275 PF00467 KOW motif AVL55_18275 PF02357 Transcription termination factor nusG AVL55_18280 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AVL55_18290 PF00005 ABC transporter AVL55_18290 PF00664 ABC transporter transmembrane region AVL55_18295 PF03737 Demethylmenaquinone methyltransferase AVL55_18300 PF01431 Peptidase family M13 AVL55_18300 PF05649 Peptidase family M13 AVL55_18305 PF07947 AVL55_18305 AVL55_18310 PF10000 ACT domain AVL55_18310 PF13840 ACT domain AVL55_18315 PF00270 DEAD/DEAH box helicase AVL55_18315 PF00271 Helicase conserved C-terminal domain AVL55_18315 PF03880 DbpA RNA binding domain AVL55_18320 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL55_18325 PF01979 Amidohydrolase family AVL55_18330 PF08212 Lipocalin-like domain AVL55_18335 PF00248 Aldo/keto reductase family AVL55_18340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL55_18345 PF00924 Mechanosensitive ion channel AVL55_18345 PF05552 Conserved TM helix AVL55_18350 PF07690 Major Facilitator Superfamily AVL55_18355 PF00128 Alpha amylase, catalytic domain AVL55_18355 PF16657 AVL55_18355 AVL55_18365 PF01227 GTP cyclohydrolase I AVL55_18370 PF13561 Enoyl-(Acyl carrier protein) reductase AVL55_18375 PF04371 Porphyromonas-type peptidyl-arginine deiminase AVL55_18380 PF00795 Carbon-nitrogen hydrolase AVL55_18385 PF00149 Calcineurin-like phosphoesterase AVL55_18390 PF00270 DEAD/DEAH box helicase AVL55_18390 PF00271 Helicase conserved C-terminal domain AVL55_18390 PF08494 AVL55_18390 AVL55_18395 PF04235 AVL55_18395 AVL55_18400 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL55_18405 PF12706 Beta-lactamase superfamily domain AVL55_18410 PF01068 ATP dependent DNA ligase domain AVL55_18410 PF04675 DNA ligase N terminus AVL55_18410 PF04679 ATP dependent DNA ligase C terminal region AVL55_18415 PF01132 Elongation factor P (EF-P) OB domain AVL55_18415 PF08207 Elongation factor P (EF-P) KOW-like domain AVL55_18415 PF09285 Elongation factor P, C-terminal AVL55_18420 PF00294 pfkB family carbohydrate kinase AVL55_18425 PF00480 ROK family AVL55_18425 PF13412 Winged helix-turn-helix DNA-binding AVL55_18430 PF02574 Homocysteine S-methyltransferase AVL55_18435 PF00043 Glutathione S-transferase, C-terminal domain AVL55_18435 PF02798 Glutathione S-transferase, N-terminal domain AVL55_18440 PF00043 Glutathione S-transferase, C-terminal domain AVL55_18440 PF13417 Glutathione S-transferase, N-terminal domain AVL55_18445 PF03280 Proteobacterial lipase chaperone protein AVL55_18450 PF00561 alpha/beta hydrolase fold AVL55_18455 PF08241 Methyltransferase domain AVL55_18460 PF09996 Uncharacterized protein conserved in bacteria (DUF2237) AVL55_18465 PF00171 Aldehyde dehydrogenase family AVL55_18470 PF00205 Thiamine pyrophosphate enzyme, central domain AVL55_18470 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVL55_18470 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVL55_18475 PF00775 Dioxygenase AVL55_18480 PF13430 AVL55_18480 AVL55_18485 PF00762 Ferrochelatase AVL55_18490 PF03806 AVL55_18490 AVL55_18495 PF01145 SPFH domain / Band 7 family AVL55_18500 PF01145 SPFH domain / Band 7 family AVL55_18500 PF12221 AVL55_18500 AVL55_18505 PF01926 50S ribosome-binding GTPase AVL55_18505 PF13167 AVL55_18505 AVL55_18505 PF16360 AVL55_18505 AVL55_18510 PF17209 AVL55_18510 AVL55_18515 PF01715 IPP transferase AVL55_18520 PF01119 DNA mismatch repair protein, C-terminal domain AVL55_18520 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_18525 PF01476 LysM domain AVL55_18525 PF01520 N-acetylmuramoyl-L-alanine amidase AVL55_18525 PF11741 AMIN domain AVL55_18530 PF02367 Uncharacterised P-loop hydrolase UPF0079 AVL55_18535 PF01256 Carbohydrate kinase AVL55_18535 PF03853 YjeF-related protein N-terminus AVL55_18540 PF08331 AVL55_18540 AVL55_18540 PF13484 AVL55_18540 AVL55_18550 PF01208 Uroporphyrinogen decarboxylase (URO-D) AVL55_18555 PF00293 NUDIX domain AVL55_18555 PF09297 NADH pyrophosphatase zinc ribbon domain AVL55_18560 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AVL55_18565 PF01475 Ferric uptake regulator family AVL55_18570 PF13690 Chemotaxis phosphatase CheX AVL55_18575 PF01894 Uncharacterised protein family UPF0047 AVL55_18580 PF00691 OmpA family AVL55_18580 PF02412 Thrombospondin type 3 repeat AVL55_18585 PF00772 DnaB-like helicase N terminal domain AVL55_18585 PF03796 DnaB-like helicase C terminal domain AVL55_18595 PF13349 AVL55_18595 AVL55_18605 PF04542 Sigma-70 region 2 AVL55_18605 PF08281 Sigma-70, region 4 AVL55_18610 PF03473 MOSC domain AVL55_18615 PF12706 Beta-lactamase superfamily domain AVL55_18620 PF00072 Response regulator receiver domain AVL55_18620 PF00486 Transcriptional regulatory protein, C terminal AVL55_18625 PF00512 His Kinase A (phospho-acceptor) domain AVL55_18625 PF00672 HAMP domain AVL55_18625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_18625 PF16750 AVL55_18625 AVL55_18630 PF03929 AVL55_18630 AVL55_18635 PF00593 TonB dependent receptor AVL55_18635 PF07715 TonB-dependent Receptor Plug Domain AVL55_18640 PF16576 AVL55_18640 AVL55_18650 PF01281 Ribosomal protein L9, N-terminal domain AVL55_18650 PF03948 Ribosomal protein L9, C-terminal domain AVL55_18655 PF01084 Ribosomal protein S18 AVL55_18660 PF01250 Ribosomal protein S6 AVL55_18665 PF07130 YebG protein AVL55_18670 PF00005 ABC transporter AVL55_18675 PF02687 AVL55_18675 AVL55_18675 PF12704 MacB-like periplasmic core domain AVL55_18680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_18680 PF08447 PAS fold AVL55_18685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_18690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_18690 PF13682 Chemoreceptor zinc-binding domain AVL55_18695 PF03601 AVL55_18695 AVL55_18705 PF00005 ABC transporter AVL55_18710 PF00005 ABC transporter AVL55_18710 PF00664 ABC transporter transmembrane region AVL55_18715 PF08173 AVL55_18715 AVL55_18720 PF02322 AVL55_18720 AVL55_18725 PF01654 AVL55_18725 AVL55_18730 PF11845 AVL55_18730 AVL55_18735 PF00158 Sigma-54 interaction domain AVL55_18735 PF02954 Bacterial regulatory protein, Fis family AVL55_18735 PF08448 PAS fold AVL55_18745 PF00593 TonB dependent receptor AVL55_18745 PF07715 TonB-dependent Receptor Plug Domain AVL55_18750 PF01925 AVL55_18750 AVL55_18755 PF14534 Domain of unknown function (DUF4440) AVL55_18760 PF02649 Type I GTP cyclohydrolase folE2 AVL55_18765 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AVL55_18770 PF11127 Protein of unknown function (DUF2892) AVL55_18780 PF17131 AVL55_18780 AVL55_18785 PF03176 MMPL family AVL55_18790 PF07690 Major Facilitator Superfamily AVL55_18795 PF04954 Siderophore-interacting protein AVL55_18795 PF08021 Siderophore-interacting FAD-binding domain AVL55_18800 PF05532 CsbD-like AVL55_18815 PF00472 RF-1 domain AVL55_18820 PF00561 alpha/beta hydrolase fold AVL55_18835 PF00571 CBS domain AVL55_18845 PF01292 Prokaryotic cytochrome b561 AVL55_18850 PF04264 YceI-like domain AVL55_18855 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_18860 PF00593 TonB dependent receptor AVL55_18860 PF07715 TonB-dependent Receptor Plug Domain AVL55_18865 PF11026 AVL55_18865 AVL55_18870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_18870 PF03466 LysR substrate binding domain AVL55_18875 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AVL55_18880 PF00107 Zinc-binding dehydrogenase AVL55_18880 PF16884 AVL55_18880 AVL55_18885 PF00990 GGDEF domain AVL55_18890 PF00072 Response regulator receiver domain AVL55_18890 PF00512 His Kinase A (phospho-acceptor) domain AVL55_18890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_18895 PF04392 ABC transporter substrate binding protein AVL55_18900 PF00296 Luciferase-like monooxygenase AVL55_18915 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AVL55_18915 PF04851 Type III restriction enzyme, res subunit AVL55_18915 PF11867 AVL55_18915 AVL55_18920 PF02481 DNA recombination-mediator protein A AVL55_18925 PF00156 Phosphoribosyl transferase domain AVL55_18925 PF00270 DEAD/DEAH box helicase AVL55_18925 PF00271 Helicase conserved C-terminal domain AVL55_18930 PF01420 Type I restriction modification DNA specificity domain AVL55_18935 PF02384 N-6 DNA Methylase AVL55_18935 PF12161 HsdM N-terminal domain AVL55_18940 PF12728 Helix-turn-helix domain AVL55_18950 PF01381 Helix-turn-helix AVL55_18955 PF01380 SIS domain AVL55_18955 PF13522 Glutamine amidotransferase domain AVL55_18960 PF00455 AVL55_18960 AVL55_18960 PF08220 DeoR-like helix-turn-helix domain AVL55_18965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVL55_18965 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AVL55_18970 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_18970 PF12804 MobA-like NTP transferase domain AVL55_18970 PF14602 Hexapeptide repeat of succinyl-transferase AVL55_18975 PF00990 GGDEF domain AVL55_18980 PF00892 EamA-like transporter family AVL55_18985 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AVL55_18990 PF02805 Metal binding domain of Ada AVL55_18990 PF06029 AlkA N-terminal domain AVL55_18990 PF12833 Helix-turn-helix domain AVL55_18995 PF00144 Beta-lactamase AVL55_19000 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AVL55_19010 PF02233 NAD(P) transhydrogenase beta subunit AVL55_19015 PF12769 Domain of unknown function (DUF3814) AVL55_19020 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AVL55_19020 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AVL55_19025 PF00593 TonB dependent receptor AVL55_19025 PF07715 TonB-dependent Receptor Plug Domain AVL55_19030 PF04820 Tryptophan halogenase AVL55_19035 PF07277 AVL55_19035 AVL55_19045 PF02424 ApbE family AVL55_19045 PF10029 AVL55_19045 AVL55_19050 PF13202 EF hand AVL55_19055 PF10670 AVL55_19055 AVL55_19060 PF00593 TonB dependent receptor AVL55_19060 PF07715 TonB-dependent Receptor Plug Domain AVL55_19070 PF00593 TonB dependent receptor AVL55_19070 PF07715 TonB-dependent Receptor Plug Domain AVL55_19075 PF04542 Sigma-70 region 2 AVL55_19075 PF08281 Sigma-70, region 4 AVL55_19080 PF04773 FecR protein AVL55_19080 PF16220 AVL55_19080 AVL55_19080 PF16344 AVL55_19080 AVL55_19090 PF13616 PPIC-type PPIASE domain AVL55_19095 PF10688 AVL55_19095 AVL55_19100 PF01040 UbiA prenyltransferase family AVL55_19105 PF03626 AVL55_19105 AVL55_19110 PF00510 Cytochrome c oxidase subunit III AVL55_19115 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVL55_19120 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AVL55_19120 PF06481 COX Aromatic Rich Motif AVL55_19130 PF09339 IclR helix-turn-helix domain AVL55_19140 PF05960 Bacterial protein of unknown function (DUF885) AVL55_19145 PF00118 TCP-1/cpn60 chaperonin family AVL55_19150 PF00166 Chaperonin 10 Kd subunit AVL55_19155 PF04186 AVL55_19155 AVL55_19160 PF03091 CutA1 divalent ion tolerance protein AVL55_19165 PF02683 AVL55_19165 AVL55_19165 PF11412 Disulphide bond corrector protein DsbC AVL55_19165 PF13899 Thioredoxin-like AVL55_19170 PF01551 Peptidase family M23 AVL55_19175 PF01220 Dehydroquinase class II AVL55_19180 PF00364 Biotin-requiring enzyme AVL55_19185 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AVL55_19185 PF02785 Biotin carboxylase C-terminal domain AVL55_19185 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVL55_19200 PF10985 AVL55_19200 AVL55_19205 PF00929 Exonuclease AVL55_19205 PF08774 VRR-NUC domain AVL55_19215 PF14255 AVL55_19215 AVL55_19220 PF01613 Flavin reductase like domain AVL55_19225 PF01355 High potential iron-sulfur protein AVL55_19230 PF01425 Amidase AVL55_19235 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL55_19240 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AVL55_19245 PF01207 Dihydrouridine synthase (Dus) AVL55_19250 PF02954 Bacterial regulatory protein, Fis family AVL55_19255 PF01808 AICARFT/IMPCHase bienzyme AVL55_19255 PF02142 MGS-like domain AVL55_19265 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AVL55_19265 PF02843 Phosphoribosylglycinamide synthetase, C domain AVL55_19265 PF02844 Phosphoribosylglycinamide synthetase, N domain AVL55_19270 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AVL55_19275 PF06452 Domain of unknown function (DUF1083) AVL55_19280 PF00520 Ion transport protein AVL55_19285 PF00485 Phosphoribulokinase / Uridine kinase family AVL55_19290 PF11017 AVL55_19290 AVL55_19295 PF00072 Response regulator receiver domain AVL55_19295 PF00486 Transcriptional regulatory protein, C terminal AVL55_19300 PF00512 His Kinase A (phospho-acceptor) domain AVL55_19300 PF00672 HAMP domain AVL55_19300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_19305 PF07690 Major Facilitator Superfamily AVL55_19310 PF01055 Glycosyl hydrolases family 31 AVL55_19310 PF13802 Galactose mutarotase-like AVL55_19310 PF17137 AVL55_19310 AVL55_19315 PF01293 Phosphoenolpyruvate carboxykinase AVL55_19320 PF01430 Hsp33 protein AVL55_19325 PF01479 S4 domain AVL55_19330 PF11356 Type IV pilus biogenesis AVL55_19330 PF13180 PDZ domain AVL55_19335 PF00263 AVL55_19335 AVL55_19335 PF03958 Bacterial type II/III secretion system short domain AVL55_19340 PF00437 Type II/IV secretion system protein AVL55_19345 PF00482 Type II secretion system (T2SS), protein F AVL55_19350 PF07963 Prokaryotic N-terminal methylation motif AVL55_19350 PF08334 Type II secretion system (T2SS), protein G AVL55_19355 PF07963 Prokaryotic N-terminal methylation motif AVL55_19360 PF02501 Type II secretion system (T2SS), protein I AVL55_19360 PF07963 Prokaryotic N-terminal methylation motif AVL55_19365 PF07963 Prokaryotic N-terminal methylation motif AVL55_19365 PF11612 Type II secretion system (T2SS), protein J AVL55_19370 PF03934 Type II secretion system (T2SS), protein K AVL55_19375 PF05134 Type II secretion system (T2SS), protein L AVL55_19375 PF12693 GspL periplasmic domain AVL55_19380 PF04612 Type II secretion system (T2SS), protein M AVL55_19385 PF01203 AVL55_19385 AVL55_19390 PF06097 AVL55_19390 AVL55_19395 PF12706 Beta-lactamase superfamily domain AVL55_19400 PF00171 Aldehyde dehydrogenase family AVL55_19405 PF01931 Protein of unknown function DUF84 AVL55_19410 PF13419 Haloacid dehalogenase-like hydrolase AVL55_19415 PF00293 NUDIX domain AVL55_19420 PF00459 Inositol monophosphatase family AVL55_19425 PF04264 YceI-like domain AVL55_19430 PF13506 Glycosyl transferase family 21 AVL55_19435 PF04349 Periplasmic glucan biosynthesis protein, MdoG AVL55_19440 PF13505 Outer membrane protein beta-barrel domain AVL55_19445 PF06794 Uncharacterised protein family (UPF0270) AVL55_19450 PF00561 alpha/beta hydrolase fold AVL55_19455 PF09523 AVL55_19455 AVL55_19460 PF00005 ABC transporter AVL55_19460 PF12848 ABC transporter AVL55_19465 PF09526 AVL55_19465 AVL55_19470 PF05359 AVL55_19470 AVL55_19475 PF04102 SlyX AVL55_19480 PF00400 WD domain, G-beta repeat AVL55_19485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL55_19485 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AVL55_19495 PF01272 Transcription elongation factor, GreA/GreB, C-term AVL55_19495 PF03449 Transcription elongation factor, N-terminal AVL55_19500 PF00575 S1 RNA binding domain AVL55_19500 PF09371 Tex-like protein N-terminal domain AVL55_19500 PF12836 Helix-hairpin-helix motif AVL55_19500 PF16921 AVL55_19500 AVL55_19505 PF00112 Papain family cysteine protease AVL55_19510 PF12118 AVL55_19510 AVL55_19520 PF12697 Alpha/beta hydrolase family AVL55_19530 PF00246 Zinc carboxypeptidase AVL55_19535 PF01106 NifU-like domain AVL55_19535 PF01521 Iron-sulphur cluster biosynthesis AVL55_19545 PF01177 Asp/Glu/Hydantoin racemase AVL55_19555 PF01554 MatE AVL55_19560 PF01522 Polysaccharide deacetylase AVL55_19565 PF00583 Acetyltransferase (GNAT) family AVL55_19570 PF02630 SCO1/SenC AVL55_19575 PF01040 UbiA prenyltransferase family AVL55_19580 PF02628 AVL55_19580 AVL55_19590 PF02104 AVL55_19590 AVL55_19595 PF11137 AVL55_19595 AVL55_19600 PF00510 Cytochrome c oxidase subunit III AVL55_19605 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AVL55_19610 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVL55_19615 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AVL55_19615 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AVL55_19615 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVL55_19620 PF00717 Peptidase S24-like AVL55_19620 PF01726 LexA DNA binding domain AVL55_19625 PF01590 GAF domain AVL55_19630 PF01553 Acyltransferase AVL55_19635 PF00291 Pyridoxal-phosphate dependent enzyme AVL55_19635 PF00585 C-terminal regulatory domain of Threonine dehydratase AVL55_19640 PF00920 Dehydratase family AVL55_19645 PF03458 AVL55_19645 AVL55_19650 PF01078 Magnesium chelatase, subunit ChlI AVL55_19650 PF13335 AVL55_19650 AVL55_19650 PF13541 Subunit ChlI of Mg-chelatase AVL55_19655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_19655 PF03466 LysR substrate binding domain AVL55_19660 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AVL55_19660 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AVL55_19665 PF07690 Major Facilitator Superfamily AVL55_19670 PF00326 Prolyl oligopeptidase family AVL55_19675 PF01103 Surface antigen AVL55_19675 PF17243 AVL55_19675 AVL55_19680 PF04357 AVL55_19680 AVL55_19690 PF04542 Sigma-70 region 2 AVL55_19690 PF08281 Sigma-70, region 4 AVL55_19700 PF00892 EamA-like transporter family AVL55_19705 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVL55_19705 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL55_19710 PF13279 Thioesterase-like superfamily AVL55_19715 PF00696 Amino acid kinase family AVL55_19715 PF01472 PUA domain AVL55_19720 PF01433 Peptidase family M1 AVL55_19735 PF03109 AVL55_19735 AVL55_19750 PF11219 AVL55_19750 AVL55_19755 PF06938 Protein of unknown function (DUF1285) AVL55_19760 PF01979 Amidohydrolase family AVL55_19765 PF09335 AVL55_19765 AVL55_19780 PF01206 Sulfurtransferase TusA AVL55_19785 PF00156 Phosphoribosyl transferase domain AVL55_19790 PF01138 3' exoribonuclease family, domain 1 AVL55_19790 PF03725 3' exoribonuclease family, domain 2 AVL55_19795 PF03755 AVL55_19795 AVL55_19795 PF08340 AVL55_19795 AVL55_19800 PF09907 AVL55_19800 AVL55_19810 PF04851 Type III restriction enzyme, res subunit AVL55_19820 PF01661 Macro domain AVL55_19825 PF14487 AVL55_19825 AVL55_19830 PF04411 AVL55_19830 AVL55_19830 PF09823 AVL55_19830 AVL55_19840 PF00145 C-5 cytosine-specific DNA methylase AVL55_19845 PF09339 IclR helix-turn-helix domain AVL55_19855 PF07804 HipA-like C-terminal domain AVL55_19855 PF13657 HipA N-terminal domain AVL55_19860 PF13443 Cro/C1-type HTH DNA-binding domain AVL55_19870 PF13340 AVL55_19870 AVL55_19870 PF13586 AVL55_19870 AVL55_19880 PF03203 AVL55_19880 AVL55_19885 PF13411 MerR HTH family regulatory protein AVL55_19905 PF07804 HipA-like C-terminal domain AVL55_19905 PF13657 HipA N-terminal domain AVL55_19910 PF13560 Helix-turn-helix domain AVL55_19915 PF04820 Tryptophan halogenase AVL55_19920 PF04820 Tryptophan halogenase AVL55_19925 PF00593 TonB dependent receptor AVL55_19925 PF07715 TonB-dependent Receptor Plug Domain AVL55_19930 PF00232 Glycosyl hydrolase family 1 AVL55_19935 PF13347 MFS/sugar transport protein AVL55_19940 PF00356 Bacterial regulatory proteins, lacI family AVL55_19940 PF13377 Periplasmic binding protein-like domain AVL55_19945 PF07786 AVL55_19945 AVL55_19950 PF13474 SnoaL-like domain AVL55_19955 PF00691 OmpA family AVL55_19955 PF13488 AVL55_19955 AVL55_19960 PF01966 HD domain AVL55_19960 PF11871 AVL55_19960 AVL55_19965 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AVL55_19970 PF03942 AVL55_19970 AVL55_19975 PF00043 Glutathione S-transferase, C-terminal domain AVL55_19975 PF13417 Glutathione S-transferase, N-terminal domain AVL55_19990 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AVL55_19990 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AVL55_19995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVL55_19995 PF02874 ATP synthase alpha/beta family, beta-barrel domain AVL55_20000 PF00231 ATP synthase AVL55_20005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVL55_20005 PF00306 ATP synthase alpha/beta chain, C terminal domain AVL55_20005 PF02874 ATP synthase alpha/beta family, beta-barrel domain AVL55_20010 PF00213 ATP synthase delta (OSCP) subunit AVL55_20015 PF00430 ATP synthase B/B' CF(0) AVL55_20020 PF00137 ATP synthase subunit C AVL55_20025 PF00119 ATP synthase A chain AVL55_20030 PF03899 AVL55_20030 AVL55_20035 PF02195 ParB-like nuclease domain AVL55_20040 PF13614 AAA domain AVL55_20045 PF02527 rRNA small subunit methyltransferase G AVL55_20050 PF01134 Glucose inhibited division protein A AVL55_20050 PF13932 GidA associated domain 3 AVL55_20055 PF01695 IstB-like ATP binding protein AVL55_20065 PF00258 Flavodoxin AVL55_20070 PF01926 50S ribosome-binding GTPase AVL55_20070 PF10396 GTP-binding protein TrmE N-terminus AVL55_20070 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE AVL55_20075 PF04461 Protein of unknown function (DUF520) AVL55_20080 PF02096 60Kd inner membrane protein AVL55_20080 PF14849 YidC periplasmic domain AVL55_20085 PF00825 Ribonuclease P AVL55_20090 PF00468 Ribosomal protein L34