AVL55_00005 SM00382 ATPases associated with a variety of cellular activities AVL55_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AVL55_00010 SM00480 DNA polymerase III beta subunit AVL55_00020 SM00387 Histidine kinase-like ATPases AVL55_00020 SM00433 TopoisomeraseII AVL55_00070 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AVL55_00070 SM00474 3'-5' exonuclease AVL55_00070 SM00475 5'-3' exonuclease AVL55_00070 SM00482 DNA polymerase A domain AVL55_00105 SM00257 Lysin motif AVL55_00200 SM00481 DNA polymerase alpha chain like domain AVL55_00285 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AVL55_00285 SM01232 AVL55_00285 AVL55_00310 SM00052 Putative diguanylate phosphodiesterase AVL55_00310 SM00267 diguanylate cyclase AVL55_00320 SM00829 Enoylreductase AVL55_00325 SM00450 Rhodanese Homology Domain AVL55_00360 SM00052 Putative diguanylate phosphodiesterase AVL55_00360 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL55_00360 SM00267 diguanylate cyclase AVL55_00380 SM00530 Helix-turn-helix XRE-family like proteins AVL55_00480 SM00849 Metallo-beta-lactamase superfamily AVL55_00500 SM00876 Biotin and Thiamin Synthesis associated domain AVL55_00550 SM00267 diguanylate cyclase AVL55_00560 SM00072 Guanylate kinase homologues. AVL55_00565 SM01409 AVL55_00565 AVL55_00570 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_00570 SM00954 Region found in RelA / SpoT proteins AVL55_00585 SM00487 DEAD-like helicases superfamily AVL55_00585 SM00490 helicase superfamily c-terminal domain AVL55_00615 SM00382 ATPases associated with a variety of cellular activities AVL55_00660 SM00422 helix_turn_helix, mercury resistance AVL55_00745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_00765 SM00052 Putative diguanylate phosphodiesterase AVL55_00765 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_00765 SM00267 diguanylate cyclase AVL55_00780 SM00341 Helicase and RNase D C-terminal AVL55_00780 SM00487 DEAD-like helicases superfamily AVL55_00780 SM00490 helicase superfamily c-terminal domain AVL55_00780 SM00956 AVL55_00780 AVL55_00790 SM00924 MgtE intracellular N domain AVL55_00800 SM00267 diguanylate cyclase AVL55_00800 SM00448 cheY-homologous receiver domain AVL55_00810 SM00971 Serine acetyltransferase, N-terminal AVL55_00815 SM00267 diguanylate cyclase AVL55_00855 SM00014 Acid phosphatase homologues AVL55_00895 SM01130 AVL55_00895 AVL55_00900 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AVL55_00935 SM00354 helix_turn _helix lactose operon repressor AVL55_01040 SM00420 helix_turn_helix, Deoxyribose operon repressor AVL55_01040 SM01134 AVL55_01040 AVL55_01085 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_01125 SM01038 Beta galactosidase small chain AVL55_01130 SM00448 cheY-homologous receiver domain AVL55_01130 SM00862 Transcriptional regulatory protein, C terminal AVL55_01135 SM00387 Histidine kinase-like ATPases AVL55_01160 SM00478 endonuclease III AVL55_01160 SM00525 AVL55_01160 AVL55_01215 SM00857 Resolvase, N terminal domain AVL55_01240 SM00422 helix_turn_helix, mercury resistance AVL55_01340 SM00448 cheY-homologous receiver domain AVL55_01340 SM00862 Transcriptional regulatory protein, C terminal AVL55_01345 SM00387 Histidine kinase-like ATPases AVL55_01385 SM00422 helix_turn_helix, mercury resistance AVL55_01450 SM00267 diguanylate cyclase AVL55_01465 SM00342 helix_turn_helix, arabinose operon control protein AVL55_01465 SM00387 Histidine kinase-like ATPases AVL55_01465 SM00448 cheY-homologous receiver domain AVL55_01480 SM00354 helix_turn _helix lactose operon repressor AVL55_01555 SM00855 Phosphoglycerate mutase family AVL55_01575 SM00671 Sel1-like repeats. AVL55_01580 SM00382 ATPases associated with a variety of cellular activities AVL55_01585 SM01403 AVL55_01585 AVL55_01605 SM01382 AVL55_01605 AVL55_01605 SM01383 AVL55_01605 AVL55_01620 SM00322 K homology RNA-binding domain AVL55_01665 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_01665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_01700 SM00487 DEAD-like helicases superfamily AVL55_01700 SM00490 helicase superfamily c-terminal domain AVL55_01700 SM00847 Helicase associated domain (HA2) Add an annotation AVL55_01730 SM00342 helix_turn_helix, arabinose operon control protein AVL55_01740 SM00938 Nitrogen regulatory protein P-II AVL55_01755 SM00052 Putative diguanylate phosphodiesterase AVL55_01755 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_01755 SM00091 PAS domain AVL55_01755 SM00267 diguanylate cyclase AVL55_01825 SM00073 Histidine Phosphotransfer domain AVL55_01825 SM00387 Histidine kinase-like ATPases AVL55_01825 SM00388 His Kinase A (phosphoacceptor) domain AVL55_01825 SM00448 cheY-homologous receiver domain AVL55_01830 SM00434 DNA Topoisomerase IV AVL55_01840 SM00052 Putative diguanylate phosphodiesterase AVL55_01840 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_01840 SM00267 diguanylate cyclase AVL55_01845 SM01150 AVL55_01845 AVL55_01920 SM00965 Secretin and TonB N terminus short domain AVL55_01940 SM00842 Cell division protein FtsA AVL55_01950 SM00919 Malic enzyme, NAD binding domain AVL55_01950 SM01274 AVL55_01950 AVL55_01970 SM01060 AVL55_01970 AVL55_02010 SM00859 Semialdehyde dehydrogenase, NAD binding domain AVL55_02015 SM00851 MGS-like domain AVL55_02025 SM00448 cheY-homologous receiver domain AVL55_02025 SM00862 Transcriptional regulatory protein, C terminal AVL55_02030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_02030 SM00387 Histidine kinase-like ATPases AVL55_02030 SM00388 His Kinase A (phosphoacceptor) domain AVL55_02050 SM00382 ATPases associated with a variety of cellular activities AVL55_02075 SM00450 Rhodanese Homology Domain AVL55_02115 SM00479 AVL55_02115 AVL55_02135 SM00632 AVL55_02135 AVL55_02135 SM00642 Alpha-amylase domain AVL55_02190 SM00267 diguanylate cyclase AVL55_02195 SM01004 Delta-aminolevulinic acid dehydratase AVL55_02205 SM00487 DEAD-like helicases superfamily AVL55_02205 SM00490 helicase superfamily c-terminal domain AVL55_02215 SM00357 Cold shock protein domain AVL55_02215 SM00382 ATPases associated with a variety of cellular activities AVL55_02215 SM00959 Rho termination factor, N-terminal domain AVL55_02225 SM00387 Histidine kinase-like ATPases AVL55_02225 SM00388 His Kinase A (phosphoacceptor) domain AVL55_02225 SM00448 cheY-homologous receiver domain AVL55_02235 SM01001 AIR carboxylase AVL55_02295 SM00788 Adenylosuccinate synthetase AVL55_02345 SM01005 Alanine racemase, C-terminal domain AVL55_02375 SM00062 Bacterial periplasmic substrate-binding proteins AVL55_02445 SM00530 Helix-turn-helix XRE-family like proteins AVL55_02460 SM00530 Helix-turn-helix XRE-family like proteins AVL55_02600 SM00257 Lysin motif AVL55_02640 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_02640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_02640 SM01049 AVL55_02640 AVL55_02645 SM00344 helix_turn_helix ASNC type AVL55_02650 SM00829 Enoylreductase AVL55_02680 SM00448 cheY-homologous receiver domain AVL55_02680 SM00862 Transcriptional regulatory protein, C terminal AVL55_02685 SM00388 His Kinase A (phosphoacceptor) domain AVL55_02690 SM00287 Bacterial SH3 domain homologues AVL55_02695 SM01118 AVL55_02695 AVL55_02705 SM00927 DNA mismatch repair enzyme MutH AVL55_02715 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL55_02735 SM00448 cheY-homologous receiver domain AVL55_02740 SM00267 diguanylate cyclase AVL55_02745 SM00387 Histidine kinase-like ATPases AVL55_02745 SM00388 His Kinase A (phosphoacceptor) domain AVL55_02745 SM00448 cheY-homologous receiver domain AVL55_02770 SM00487 DEAD-like helicases superfamily AVL55_02770 SM00490 helicase superfamily c-terminal domain AVL55_02780 SM00670 Large family of predicted nucleotide-binding domains AVL55_02785 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL55_02810 SM00487 DEAD-like helicases superfamily AVL55_02810 SM00490 helicase superfamily c-terminal domain AVL55_02815 SM00028 Tetratricopeptide repeats AVL55_02850 SM00387 Histidine kinase-like ATPases AVL55_02850 SM00433 TopoisomeraseII AVL55_02885 SM00841 Elongation factor P, C-terminal AVL55_02885 SM01185 AVL55_02885 AVL55_02930 SM00014 Acid phosphatase homologues AVL55_02940 SM01012 AVL55_02940 AVL55_02965 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AVL55_02985 SM00267 diguanylate cyclase AVL55_02990 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_02990 SM00091 PAS domain AVL55_02990 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_03005 SM00382 ATPases associated with a variety of cellular activities AVL55_03065 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AVL55_03070 SM01007 Class II Aldolase and Adducin N-terminal domain AVL55_03100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_03100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_03110 SM00400 zinc finger AVL55_03110 SM00493 AVL55_03110 AVL55_03110 SM00766 DNA primase DnaG DnaB-binding AVL55_03135 SM01207 AVL55_03135 AVL55_03140 SM00905 Dihydroneopterin aldolase AVL55_03175 SM00530 Helix-turn-helix XRE-family like proteins AVL55_03185 SM00387 Histidine kinase-like ATPases AVL55_03190 SM00448 cheY-homologous receiver domain AVL55_03190 SM00862 Transcriptional regulatory protein, C terminal AVL55_03195 SM00387 Histidine kinase-like ATPases AVL55_03195 SM00388 His Kinase A (phosphoacceptor) domain AVL55_03210 SM00710 Parallel beta-helix repeats AVL55_03245 SM00028 Tetratricopeptide repeats AVL55_03270 SM00387 Histidine kinase-like ATPases AVL55_03270 SM00388 His Kinase A (phosphoacceptor) domain AVL55_03270 SM00448 cheY-homologous receiver domain AVL55_03275 SM00028 Tetratricopeptide repeats AVL55_03310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_03310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_03325 SM00650 Ribosomal RNA adenine dimethylases AVL55_03350 SM00271 DnaJ molecular chaperone homology domain AVL55_03395 SM00954 Region found in RelA / SpoT proteins AVL55_03425 SM00822 AVL55_03425 AVL55_03430 SM01236 AVL55_03430 AVL55_03475 SM00387 Histidine kinase-like ATPases AVL55_03475 SM00388 His Kinase A (phosphoacceptor) domain AVL55_03480 SM00448 cheY-homologous receiver domain AVL55_03480 SM00862 Transcriptional regulatory protein, C terminal AVL55_03525 SM00924 MgtE intracellular N domain AVL55_03555 SM00382 ATPases associated with a variety of cellular activities AVL55_03585 SM00382 ATPases associated with a variety of cellular activities AVL55_03620 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL55_03625 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL55_03700 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AVL55_03710 SM00563 Phosphate acyltransferases AVL55_03745 SM00487 DEAD-like helicases superfamily AVL55_03850 SM00052 Putative diguanylate phosphodiesterase AVL55_03850 SM00267 diguanylate cyclase AVL55_03895 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_03895 SM00091 PAS domain AVL55_03895 SM00387 Histidine kinase-like ATPases AVL55_03895 SM00388 His Kinase A (phosphoacceptor) domain AVL55_03895 SM00448 cheY-homologous receiver domain AVL55_03920 SM00861 Transketolase, pyrimidine binding domain AVL55_03925 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL55_03950 SM00448 cheY-homologous receiver domain AVL55_03950 SM00862 Transcriptional regulatory protein, C terminal AVL55_03955 SM00387 Histidine kinase-like ATPases AVL55_03955 SM00388 His Kinase A (phosphoacceptor) domain AVL55_04015 SM00382 ATPases associated with a variety of cellular activities AVL55_04055 SM00347 helix_turn_helix multiple antibiotic resistance protein AVL55_04065 SM01263 AVL55_04065 AVL55_04085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_04110 SM00642 Alpha-amylase domain AVL55_04125 SM00245 tail specific protease AVL55_04145 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL55_04145 SM00866 AVL55_04145 AVL55_04190 SM00382 ATPases associated with a variety of cellular activities AVL55_04230 SM00382 ATPases associated with a variety of cellular activities AVL55_04335 SM00448 cheY-homologous receiver domain AVL55_04340 SM00091 PAS domain AVL55_04360 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_04370 SM00487 DEAD-like helicases superfamily AVL55_04370 SM00490 helicase superfamily c-terminal domain AVL55_04380 SM00320 WD40 repeats AVL55_04390 SM00382 ATPases associated with a variety of cellular activities AVL55_04400 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_04415 SM01329 AVL55_04415 AVL55_04420 SM00917 LeuA allosteric (dimerisation) domain AVL55_04430 SM01192 AVL55_04430 AVL55_04430 SM01193 AVL55_04430 AVL55_04440 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AVL55_04440 SM00534 ATPase domain of DNA mismatch repair MUTS family AVL55_04450 SM00382 ATPases associated with a variety of cellular activities AVL55_04455 SM00382 ATPases associated with a variety of cellular activities AVL55_04475 SM00382 ATPases associated with a variety of cellular activities AVL55_04555 SM00382 ATPases associated with a variety of cellular activities AVL55_04595 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AVL55_04600 SM01329 AVL55_04600 AVL55_04620 SM00267 diguanylate cyclase AVL55_04680 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_04725 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL55_04735 SM00935 Outer membrane protein (OmpH-like) AVL55_04760 SM00481 DNA polymerase alpha chain like domain AVL55_04775 SM00267 diguanylate cyclase AVL55_04795 SM00062 Bacterial periplasmic substrate-binding proteins AVL55_04800 SM01211 AVL55_04800 AVL55_04835 SM00858 AVL55_04835 AVL55_04840 SM00260 Two component signalling adaptor domain AVL55_04840 SM00448 cheY-homologous receiver domain AVL55_04845 SM00138 Methyltransferase, chemotaxis proteins AVL55_04890 SM00047 Lysozyme subfamily 2 AVL55_04960 SM00858 AVL55_04960 AVL55_05070 SM00984 UDP binding domain AVL55_05100 SM00382 ATPases associated with a variety of cellular activities AVL55_05105 SM00387 Histidine kinase-like ATPases AVL55_05105 SM00388 His Kinase A (phosphoacceptor) domain AVL55_05110 SM00382 ATPases associated with a variety of cellular activities AVL55_05110 SM00448 cheY-homologous receiver domain AVL55_05135 SM00382 ATPases associated with a variety of cellular activities AVL55_05195 SM00382 ATPases associated with a variety of cellular activities AVL55_05195 SM00962 SRP54-type protein, GTPase domain AVL55_05210 SM00448 cheY-homologous receiver domain AVL55_05220 SM00073 Histidine Phosphotransfer domain AVL55_05220 SM00260 Two component signalling adaptor domain AVL55_05220 SM00387 Histidine kinase-like ATPases AVL55_05220 SM01231 AVL55_05220 AVL55_05225 SM00448 cheY-homologous receiver domain AVL55_05235 SM00260 Two component signalling adaptor domain AVL55_05240 SM00260 Two component signalling adaptor domain AVL55_05260 SM01018 B12 binding domain AVL55_05275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_05275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_05290 SM00947 Carbonic anhydrase AVL55_05325 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AVL55_05370 SM00382 ATPases associated with a variety of cellular activities AVL55_05375 SM00382 ATPases associated with a variety of cellular activities AVL55_05395 SM00382 ATPases associated with a variety of cellular activities AVL55_05420 SM00091 PAS domain AVL55_05420 SM00382 ATPases associated with a variety of cellular activities AVL55_05435 SM00344 helix_turn_helix ASNC type AVL55_05440 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AVL55_05495 SM00028 Tetratricopeptide repeats AVL55_05580 SM00347 helix_turn_helix multiple antibiotic resistance protein AVL55_05605 SM00530 Helix-turn-helix XRE-family like proteins AVL55_05655 SM00422 helix_turn_helix, mercury resistance AVL55_05680 SM00422 helix_turn_helix, mercury resistance AVL55_05685 SM00857 Resolvase, N terminal domain AVL55_05720 SM00479 AVL55_05720 AVL55_05750 SM00487 DEAD-like helicases superfamily AVL55_05785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_05815 SM00671 Sel1-like repeats. AVL55_05870 SM00422 helix_turn_helix, mercury resistance AVL55_05885 SM00422 helix_turn_helix, mercury resistance AVL55_05890 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AVL55_06000 SM00382 ATPases associated with a variety of cellular activities AVL55_06035 SM00382 ATPases associated with a variety of cellular activities AVL55_06055 SM00327 von Willebrand factor (vWF) type A domain AVL55_06070 SM00778 Zinc-binding domain of primase-helicase AVL55_06140 SM00530 Helix-turn-helix XRE-family like proteins AVL55_06150 SM00836 DALR anticodon binding domain AVL55_06150 SM01016 Arginyl tRNA synthetase N terminal dom AVL55_06160 SM00028 Tetratricopeptide repeats AVL55_06175 SM00421 helix_turn_helix, Lux Regulon AVL55_06175 SM00448 cheY-homologous receiver domain AVL55_06180 SM00052 Putative diguanylate phosphodiesterase AVL55_06180 SM00267 diguanylate cyclase AVL55_06200 SM00267 diguanylate cyclase AVL55_06245 SM00937 AVL55_06245 AVL55_06295 SM00463 Small MutS-related domain AVL55_06325 SM00763 PrkA AAA domain AVL55_06355 SM00965 Secretin and TonB N terminus short domain AVL55_06370 SM00479 AVL55_06370 AVL55_06390 SM00357 Cold shock protein domain AVL55_06405 SM00478 endonuclease III AVL55_06415 SM00900 AVL55_06415 AVL55_06455 SM00487 DEAD-like helicases superfamily AVL55_06455 SM00490 helicase superfamily c-terminal domain AVL55_06555 SM00028 Tetratricopeptide repeats AVL55_06560 SM00327 von Willebrand factor (vWF) type A domain AVL55_06600 SM00052 Putative diguanylate phosphodiesterase AVL55_06600 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_06600 SM00267 diguanylate cyclase AVL55_06610 SM00855 Phosphoglycerate mutase family AVL55_06620 SM01091 Transporter associated domain AVL55_06630 SM00382 ATPases associated with a variety of cellular activities AVL55_06630 SM00962 SRP54-type protein, GTPase domain AVL55_06630 SM00963 SRP54-type protein, helical bundle domain AVL55_06675 SM00382 ATPases associated with a variety of cellular activities AVL55_06725 SM00830 Chorismate mutase type II AVL55_06730 SM00830 Chorismate mutase type II AVL55_06735 SM00448 cheY-homologous receiver domain AVL55_06750 SM00331 Sigma factor PP2C-like phosphatases AVL55_06750 SM00448 cheY-homologous receiver domain AVL55_06760 SM00052 Putative diguanylate phosphodiesterase AVL55_06760 SM00267 diguanylate cyclase AVL55_06770 SM00387 Histidine kinase-like ATPases AVL55_06770 SM00388 His Kinase A (phosphoacceptor) domain AVL55_06780 SM00382 ATPases associated with a variety of cellular activities AVL55_06780 SM00448 cheY-homologous receiver domain AVL55_06810 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AVL55_06815 SM00382 ATPases associated with a variety of cellular activities AVL55_06900 SM01321 AVL55_06900 AVL55_06915 SM00859 Semialdehyde dehydrogenase, NAD binding domain AVL55_06935 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL55_06975 SM00267 diguanylate cyclase AVL55_07040 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_07040 SM00876 Biotin and Thiamin Synthesis associated domain AVL55_07065 SM00226 Low molecular weight phosphatase family AVL55_07075 SM00382 ATPases associated with a variety of cellular activities AVL55_07085 SM00387 Histidine kinase-like ATPases AVL55_07085 SM00388 His Kinase A (phosphoacceptor) domain AVL55_07090 SM00448 cheY-homologous receiver domain AVL55_07090 SM00862 Transcriptional regulatory protein, C terminal AVL55_07115 SM00382 ATPases associated with a variety of cellular activities AVL55_07125 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_07135 SM00028 Tetratricopeptide repeats AVL55_07135 SM00448 cheY-homologous receiver domain AVL55_07200 SM01321 AVL55_07200 AVL55_07210 SM00382 ATPases associated with a variety of cellular activities AVL55_07225 SM00905 Dihydroneopterin aldolase AVL55_07235 SM00387 Histidine kinase-like ATPases AVL55_07240 SM00448 cheY-homologous receiver domain AVL55_07240 SM00862 Transcriptional regulatory protein, C terminal AVL55_07290 SM00481 DNA polymerase alpha chain like domain AVL55_07310 SM00363 S4 RNA-binding domain AVL55_07320 SM01266 AVL55_07320 AVL55_07395 SM00421 helix_turn_helix, Lux Regulon AVL55_07395 SM00448 cheY-homologous receiver domain AVL55_07405 SM00387 Histidine kinase-like ATPases AVL55_07405 SM00388 His Kinase A (phosphoacceptor) domain AVL55_07405 SM00448 cheY-homologous receiver domain AVL55_07420 SM00271 DnaJ molecular chaperone homology domain AVL55_07430 SM00052 Putative diguanylate phosphodiesterase AVL55_07430 SM00091 PAS domain AVL55_07450 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AVL55_07455 SM00851 MGS-like domain AVL55_07455 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AVL55_07505 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL55_07505 SM01091 Transporter associated domain AVL55_07520 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_07550 SM00903 Flavin reductase like domain AVL55_07610 SM00829 Enoylreductase AVL55_07620 SM01400 AVL55_07620 AVL55_07645 SM00937 AVL55_07645 AVL55_07655 SM00448 cheY-homologous receiver domain AVL55_07695 SM00838 Elongation factor G C-terminus AVL55_07695 SM00889 Elongation factor G, domain IV AVL55_07700 SM01116 AVL55_07700 AVL55_07705 SM00219 Tyrosine kinase, catalytic domain AVL55_07705 SM00331 Sigma factor PP2C-like phosphatases AVL55_07705 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AVL55_07715 SM00460 Transglutaminase/protease-like homologues AVL55_07745 SM00052 Putative diguanylate phosphodiesterase AVL55_07745 SM00267 diguanylate cyclase AVL55_07825 SM00347 helix_turn_helix multiple antibiotic resistance protein AVL55_07855 SM00369 Leucine-rich repeats, typical (most populated) subfamily AVL55_07900 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL55_07920 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_07920 SM00091 PAS domain AVL55_07920 SM00267 diguanylate cyclase AVL55_07950 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL55_07955 SM01092 CO dehydrogenase flavoprotein C-terminal domain AVL55_07995 SM00267 diguanylate cyclase AVL55_07995 SM00448 cheY-homologous receiver domain AVL55_08000 SM00387 Histidine kinase-like ATPases AVL55_08000 SM00388 His Kinase A (phosphoacceptor) domain AVL55_08000 SM00448 cheY-homologous receiver domain AVL55_08090 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AVL55_08160 SM00052 Putative diguanylate phosphodiesterase AVL55_08160 SM00267 diguanylate cyclase AVL55_08215 SM00710 Parallel beta-helix repeats AVL55_08250 SM00873 B3/4 domain AVL55_08250 SM00874 tRNA synthetase B5 domain AVL55_08250 SM00896 Ferredoxin-fold anticodon binding domain AVL55_08255 SM00411 bacterial (prokaryotic) histone like domain AVL55_08300 SM00487 DEAD-like helicases superfamily AVL55_08300 SM00490 helicase superfamily c-terminal domain AVL55_08300 SM00982 AVL55_08300 AVL55_08300 SM01058 CarD-like/TRCF domain AVL55_08400 SM00878 Biotin carboxylase C-terminal domain AVL55_08420 SM00422 helix_turn_helix, mercury resistance AVL55_08440 SM00062 Bacterial periplasmic substrate-binding proteins AVL55_08440 SM00267 diguanylate cyclase AVL55_08450 SM00479 AVL55_08450 AVL55_08455 SM00387 Histidine kinase-like ATPases AVL55_08455 SM00388 His Kinase A (phosphoacceptor) domain AVL55_08455 SM00448 cheY-homologous receiver domain AVL55_08465 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL55_08480 SM00267 diguanylate cyclase AVL55_08485 SM00342 helix_turn_helix, arabinose operon control protein AVL55_08495 SM00382 ATPases associated with a variety of cellular activities AVL55_08495 SM00487 DEAD-like helicases superfamily AVL55_08495 SM00490 helicase superfamily c-terminal domain AVL55_08495 SM00847 Helicase associated domain (HA2) Add an annotation AVL55_08510 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AVL55_08515 SM00829 Enoylreductase AVL55_08525 SM00479 AVL55_08525 AVL55_08550 SM00052 Putative diguanylate phosphodiesterase AVL55_08555 SM00382 ATPases associated with a variety of cellular activities AVL55_08570 SM00634 Bacterial Ig-like domain (group 1) AVL55_08580 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AVL55_08580 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AVL55_08580 SM00493 AVL55_08580 AVL55_08620 SM00448 cheY-homologous receiver domain AVL55_08620 SM00862 Transcriptional regulatory protein, C terminal AVL55_08625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_08625 SM00387 Histidine kinase-like ATPases AVL55_08625 SM00388 His Kinase A (phosphoacceptor) domain AVL55_08630 SM00587 ZnF_C4 abd HLH domain containing kinases domain AVL55_08635 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_08640 SM00363 S4 RNA-binding domain AVL55_08675 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AVL55_08680 SM00822 AVL55_08680 AVL55_08690 SM00825 Beta-ketoacyl synthase AVL55_08730 SM00267 diguanylate cyclase AVL55_08840 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_08840 SM00091 PAS domain AVL55_08840 SM00387 Histidine kinase-like ATPases AVL55_08840 SM00388 His Kinase A (phosphoacceptor) domain AVL55_08840 SM00448 cheY-homologous receiver domain AVL55_08845 SM00448 cheY-homologous receiver domain AVL55_08845 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_08855 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_08875 SM01387 AVL55_08875 AVL55_08880 SM00363 S4 RNA-binding domain AVL55_08895 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AVL55_08900 SM00448 cheY-homologous receiver domain AVL55_08955 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_09020 SM00347 helix_turn_helix multiple antibiotic resistance protein AVL55_09035 SM00028 Tetratricopeptide repeats AVL55_09050 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL55_09075 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AVL55_09080 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AVL55_09110 SM00357 Cold shock protein domain AVL55_09120 SM00382 ATPases associated with a variety of cellular activities AVL55_09120 SM01086 C-terminal, D2-small domain, of ClpB protein AVL55_09125 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_09150 SM00731 SprT homologues. AVL55_09180 SM00870 AVL55_09180 AVL55_09185 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_09200 SM00936 Penicillin-binding protein 5, C-terminal domain AVL55_09275 SM01103 AVL55_09275 AVL55_09285 SM00382 ATPases associated with a variety of cellular activities AVL55_09315 SM00052 Putative diguanylate phosphodiesterase AVL55_09315 SM00267 diguanylate cyclase AVL55_09315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_09325 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AVL55_09330 SM00046 Diacylglycerol kinase catalytic domain (presumed) AVL55_09330 SM00195 Dual specificity phosphatase, catalytic domain AVL55_09330 SM00404 Protein tyrosine phosphatase, catalytic domain motif AVL55_09380 SM00507 HNH nucleases AVL55_09385 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_09385 SM00322 K homology RNA-binding domain AVL55_09455 SM00028 Tetratricopeptide repeats AVL55_09475 SM00771 ZipA, C-terminal domain (FtsZ-binding) AVL55_09480 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AVL55_09480 SM00292 breast cancer carboxy-terminal domain AVL55_09480 SM00532 Ligase N family AVL55_09495 SM00849 Metallo-beta-lactamase superfamily AVL55_09500 SM00382 ATPases associated with a variety of cellular activities AVL55_09525 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_09600 SM00861 Transketolase, pyrimidine binding domain AVL55_09615 SM00881 CoA binding domain AVL55_09660 SM00642 Alpha-amylase domain AVL55_09665 SM00642 Alpha-amylase domain AVL55_09675 SM00642 Alpha-amylase domain AVL55_09680 SM00354 helix_turn _helix lactose operon repressor AVL55_09795 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL55_09810 SM00387 Histidine kinase-like ATPases AVL55_09815 SM00448 cheY-homologous receiver domain AVL55_09815 SM00850 LytTr DNA-binding domain AVL55_09835 SM00028 Tetratricopeptide repeats AVL55_09835 SM00448 cheY-homologous receiver domain AVL55_09845 SM00450 Rhodanese Homology Domain AVL55_09850 SM00054 EF-hand, calcium binding motif AVL55_09865 SM00829 Enoylreductase AVL55_09870 SM00822 AVL55_09870 AVL55_09925 SM00382 ATPases associated with a variety of cellular activities AVL55_09950 SM00487 DEAD-like helicases superfamily AVL55_09950 SM00490 helicase superfamily c-terminal domain AVL55_09955 SM00882 Coenzyme A transferase AVL55_09960 SM00882 Coenzyme A transferase AVL55_09975 SM00387 Histidine kinase-like ATPases AVL55_10020 SM00861 Transketolase, pyrimidine binding domain AVL55_10035 SM00220 Serine/Threonine protein kinases, catalytic domain AVL55_10070 SM00945 ProQ/FINO family AVL55_10075 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL55_10075 SM00245 tail specific protease AVL55_10130 SM00981 AVL55_10130 AVL55_10140 SM00382 ATPases associated with a variety of cellular activities AVL55_10200 SM00470 ParB-like nuclease domain AVL55_10215 SM00382 ATPases associated with a variety of cellular activities AVL55_10225 SM00857 Resolvase, N terminal domain AVL55_10260 SM00530 Helix-turn-helix XRE-family like proteins AVL55_10275 SM00470 ParB-like nuclease domain AVL55_10355 SM00267 diguanylate cyclase AVL55_10375 SM00052 Putative diguanylate phosphodiesterase AVL55_10580 SM00894 Excalibur calcium-binding domain AVL55_10775 SM00100 Cyclic nucleotide-monophosphate binding domain AVL55_10775 SM00419 helix_turn_helix, cAMP Regulatory protein AVL55_10820 SM00450 Rhodanese Homology Domain AVL55_10830 SM01144 AVL55_10830 AVL55_10855 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AVL55_10855 SM00465 GIY-YIG type nucleases (URI domain) AVL55_10860 SM00421 helix_turn_helix, Lux Regulon AVL55_10860 SM00448 cheY-homologous receiver domain AVL55_10965 SM00382 ATPases associated with a variety of cellular activities AVL55_10975 SM00843 AVL55_10975 AVL55_10980 SM00344 helix_turn_helix ASNC type AVL55_10985 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AVL55_10985 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AVL55_10990 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AVL55_10995 SM00028 Tetratricopeptide repeats AVL55_11010 SM00411 bacterial (prokaryotic) histone like domain AVL55_11015 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_11035 SM00434 DNA Topoisomerase IV AVL55_11205 SM00822 AVL55_11205 AVL55_11240 SM01130 AVL55_11240 AVL55_11325 SM00421 helix_turn_helix, Lux Regulon AVL55_11325 SM00448 cheY-homologous receiver domain AVL55_11355 SM00642 Alpha-amylase domain AVL55_11365 SM00852 Probable molybdopterin binding domain AVL55_11385 SM00382 ATPases associated with a variety of cellular activities AVL55_11455 SM00342 helix_turn_helix, arabinose operon control protein AVL55_11490 SM00893 Electron transfer flavoprotein domain AVL55_11495 SM00893 Electron transfer flavoprotein domain AVL55_11505 SM00528 Domain in histone-like proteins of HNS family AVL55_11530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_11530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_11545 SM00797 Allophanate hydrolase subunit 2 AVL55_11550 SM00796 Allophanate hydrolase subunit 1 AVL55_11600 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_11605 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_11635 SM00829 Enoylreductase AVL55_11650 SM00855 Phosphoglycerate mutase family AVL55_11675 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_11680 SM00382 ATPases associated with a variety of cellular activities AVL55_11710 SM00852 Probable molybdopterin binding domain AVL55_11735 SM00344 helix_turn_helix ASNC type AVL55_11800 SM00871 Bacterial transcription activator, effector binding domain AVL55_11895 SM00382 ATPases associated with a variety of cellular activities AVL55_11935 SM00052 Putative diguanylate phosphodiesterase AVL55_11935 SM00267 diguanylate cyclase AVL55_11940 SM00849 Metallo-beta-lactamase superfamily AVL55_11970 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AVL55_11990 SM00382 ATPases associated with a variety of cellular activities AVL55_11990 SM00448 cheY-homologous receiver domain AVL55_12000 SM00387 Histidine kinase-like ATPases AVL55_12000 SM00388 His Kinase A (phosphoacceptor) domain AVL55_12005 SM00448 cheY-homologous receiver domain AVL55_12010 SM00387 Histidine kinase-like ATPases AVL55_12010 SM00388 His Kinase A (phosphoacceptor) domain AVL55_12010 SM00448 cheY-homologous receiver domain AVL55_12070 SM00631 AVL55_12070 AVL55_12075 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL55_12090 SM01350 AVL55_12090 AVL55_12095 SM00642 Alpha-amylase domain AVL55_12100 SM00642 Alpha-amylase domain AVL55_12110 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL55_12175 SM00749 bacterial OsmY and nodulation domain AVL55_12215 SM00387 Histidine kinase-like ATPases AVL55_12215 SM00388 His Kinase A (phosphoacceptor) domain AVL55_12215 SM00448 cheY-homologous receiver domain AVL55_12280 SM01060 AVL55_12280 AVL55_12325 SM00422 helix_turn_helix, mercury resistance AVL55_12355 SM00422 helix_turn_helix, mercury resistance AVL55_12445 SM00849 Metallo-beta-lactamase superfamily AVL55_12450 SM00257 Lysin motif AVL55_12460 SM00840 AVL55_12460 AVL55_12475 SM00098 Alkaline phosphatase homologues AVL55_12480 SM00098 Alkaline phosphatase homologues AVL55_12495 SM00244 prohibitin homologues AVL55_12500 SM00642 Alpha-amylase domain AVL55_12510 SM00829 Enoylreductase AVL55_12515 SM00829 Enoylreductase AVL55_12585 SM00859 Semialdehyde dehydrogenase, NAD binding domain AVL55_12595 SM01007 Class II Aldolase and Adducin N-terminal domain AVL55_12600 SM00100 Cyclic nucleotide-monophosphate binding domain AVL55_12600 SM00419 helix_turn_helix, cAMP Regulatory protein AVL55_12650 SM00825 Beta-ketoacyl synthase AVL55_12705 SM00382 ATPases associated with a variety of cellular activities AVL55_12720 SM00342 helix_turn_helix, arabinose operon control protein AVL55_12740 SM00387 Histidine kinase-like ATPases AVL55_12740 SM00388 His Kinase A (phosphoacceptor) domain AVL55_12740 SM00448 cheY-homologous receiver domain AVL55_12855 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL55_12895 SM00341 Helicase and RNase D C-terminal AVL55_12895 SM00474 3'-5' exonuclease AVL55_12925 SM00487 DEAD-like helicases superfamily AVL55_12925 SM00488 AVL55_12925 AVL55_12925 SM00491 AVL55_12925 AVL55_12960 SM00014 Acid phosphatase homologues AVL55_12975 SM00642 Alpha-amylase domain AVL55_13085 SM00387 Histidine kinase-like ATPases AVL55_13090 SM00493 AVL55_13090 AVL55_13115 SM00382 ATPases associated with a variety of cellular activities AVL55_13155 SM00382 ATPases associated with a variety of cellular activities AVL55_13165 SM00850 LytTr DNA-binding domain AVL55_13210 SM00028 Tetratricopeptide repeats AVL55_13240 SM00382 ATPases associated with a variety of cellular activities AVL55_13240 SM01086 C-terminal, D2-small domain, of ClpB protein AVL55_13250 SM00363 S4 RNA-binding domain AVL55_13320 SM00861 Transketolase, pyrimidine binding domain AVL55_13375 SM00382 ATPases associated with a variety of cellular activities AVL55_13385 SM00382 ATPases associated with a variety of cellular activities AVL55_13420 SM00358 Double-stranded RNA binding motif AVL55_13420 SM00535 Ribonuclease III family AVL55_13430 SM00838 Elongation factor G C-terminus AVL55_13485 SM00938 Nitrogen regulatory protein P-II AVL55_13570 SM00904 Riboflavin kinase AVL55_13615 SM00563 Phosphate acyltransferases AVL55_13630 SM00411 bacterial (prokaryotic) histone like domain AVL55_13635 SM00382 ATPases associated with a variety of cellular activities AVL55_13635 SM00464 Found in ATP-dependent protease La (LON) AVL55_13640 SM00382 ATPases associated with a variety of cellular activities AVL55_13640 SM00994 ClpX C4-type zinc finger AVL55_13640 SM01086 C-terminal, D2-small domain, of ClpB protein AVL55_13720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_13730 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL55_13730 SM01240 AVL55_13730 AVL55_13750 SM00382 ATPases associated with a variety of cellular activities AVL55_13755 SM00564 beta-propeller repeat AVL55_13760 SM00028 Tetratricopeptide repeats AVL55_13775 SM00530 Helix-turn-helix XRE-family like proteins AVL55_13780 SM00028 Tetratricopeptide repeats AVL55_13780 SM00257 Lysin motif AVL55_13790 SM00562 AVL55_13790 AVL55_13820 SM00382 ATPases associated with a variety of cellular activities AVL55_13870 SM01323 AVL55_13870 AVL55_13935 SM00382 ATPases associated with a variety of cellular activities AVL55_13955 SM00098 Alkaline phosphatase homologues AVL55_13960 SM00260 Two component signalling adaptor domain AVL55_13960 SM00448 cheY-homologous receiver domain AVL55_14105 SM00710 Parallel beta-helix repeats AVL55_14160 SM00382 ATPases associated with a variety of cellular activities AVL55_14165 SM00465 GIY-YIG type nucleases (URI domain) AVL55_14220 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_14250 SM00382 ATPases associated with a variety of cellular activities AVL55_14265 SM00062 Bacterial periplasmic substrate-binding proteins AVL55_14270 SM00564 beta-propeller repeat AVL55_14290 SM00267 diguanylate cyclase AVL55_14295 SM00996 S-adenosyl-L-homocysteine hydrolase AVL55_14295 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AVL55_14345 SM00886 Stress responsive A/B Barrel Domain AVL55_14410 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL55_14410 SM00382 ATPases associated with a variety of cellular activities AVL55_14430 SM00052 Putative diguanylate phosphodiesterase AVL55_14430 SM00267 diguanylate cyclase AVL55_14445 SM00354 helix_turn _helix lactose operon repressor AVL55_14475 SM00967 RNA 2'-O ribose methyltransferase substrate binding AVL55_14630 SM01092 CO dehydrogenase flavoprotein C-terminal domain AVL55_14635 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL55_14655 SM00382 ATPases associated with a variety of cellular activities AVL55_14725 SM01322 AVL55_14725 AVL55_14835 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AVL55_14835 SM01232 AVL55_14835 AVL55_14850 SM00487 DEAD-like helicases superfamily AVL55_14850 SM00490 helicase superfamily c-terminal domain AVL55_14905 SM00988 UreE urease accessory protein, N-terminal domain AVL55_14930 SM00382 ATPases associated with a variety of cellular activities AVL55_14960 SM00387 Histidine kinase-like ATPases AVL55_14960 SM00388 His Kinase A (phosphoacceptor) domain AVL55_14960 SM00448 cheY-homologous receiver domain AVL55_14965 SM00421 helix_turn_helix, Lux Regulon AVL55_14965 SM00448 cheY-homologous receiver domain AVL55_15025 SM01011 Aminopeptidase P, N-terminal domain AVL55_15050 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL55_15050 SM00387 Histidine kinase-like ATPases AVL55_15050 SM00388 His Kinase A (phosphoacceptor) domain AVL55_15050 SM00448 cheY-homologous receiver domain AVL55_15130 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL55_15130 SM00895 AVL55_15130 AVL55_15140 SM00644 AVL55_15140 AVL55_15195 SM00957 SecA DEAD-like domain AVL55_15195 SM00958 SecA preprotein cross-linking domain AVL55_15210 SM00864 Tubulin/FtsZ family, GTPase domain AVL55_15210 SM00865 Tubulin/FtsZ family, C-terminal domain AVL55_15215 SM00842 Cell division protein FtsA AVL55_15340 SM00028 Tetratricopeptide repeats AVL55_15340 SM00267 diguanylate cyclase AVL55_15350 SM00382 ATPases associated with a variety of cellular activities AVL55_15350 SM00448 cheY-homologous receiver domain AVL55_15355 SM00387 Histidine kinase-like ATPases AVL55_15395 SM00732 Likely ribonuclease with RNase H fold. AVL55_15405 SM00382 ATPases associated with a variety of cellular activities AVL55_15490 SM00360 RNA recognition motif AVL55_15515 SM00986 Uracil DNA glycosylase superfamily AVL55_15515 SM00987 UreE urease accessory protein, C-terminal domain AVL55_15545 SM00829 Enoylreductase AVL55_15555 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AVL55_15560 SM00226 Low molecular weight phosphatase family AVL55_15575 SM00448 cheY-homologous receiver domain AVL55_15585 SM00448 cheY-homologous receiver domain AVL55_15585 SM00862 Transcriptional regulatory protein, C terminal AVL55_15590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_15590 SM00387 Histidine kinase-like ATPases AVL55_15590 SM00388 His Kinase A (phosphoacceptor) domain AVL55_15630 SM00342 helix_turn_helix, arabinose operon control protein AVL55_15710 SM00421 helix_turn_helix, Lux Regulon AVL55_15710 SM00448 cheY-homologous receiver domain AVL55_15730 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL55_15730 SM00895 AVL55_15730 AVL55_15755 SM00267 diguanylate cyclase AVL55_15755 SM00448 cheY-homologous receiver domain AVL55_15775 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_15775 SM00091 PAS domain AVL55_15775 SM00387 Histidine kinase-like ATPases AVL55_15775 SM00388 His Kinase A (phosphoacceptor) domain AVL55_15775 SM00448 cheY-homologous receiver domain AVL55_15820 SM00450 Rhodanese Homology Domain AVL55_15990 SM00448 cheY-homologous receiver domain AVL55_16000 SM01230 AVL55_16000 AVL55_16010 SM00091 PAS domain AVL55_16010 SM00387 Histidine kinase-like ATPases AVL55_16010 SM00388 His Kinase A (phosphoacceptor) domain AVL55_16015 SM00382 ATPases associated with a variety of cellular activities AVL55_16015 SM00448 cheY-homologous receiver domain AVL55_16020 SM00073 Histidine Phosphotransfer domain AVL55_16025 SM00563 Phosphate acyltransferases AVL55_16045 SM00244 prohibitin homologues AVL55_16055 SM00387 Histidine kinase-like ATPases AVL55_16055 SM00388 His Kinase A (phosphoacceptor) domain AVL55_16055 SM00448 cheY-homologous receiver domain AVL55_16055 SM01358 AVL55_16055 AVL55_16145 SM00387 Histidine kinase-like ATPases AVL55_16145 SM00388 His Kinase A (phosphoacceptor) domain AVL55_16145 SM00448 cheY-homologous receiver domain AVL55_16160 SM00448 cheY-homologous receiver domain AVL55_16160 SM00862 Transcriptional regulatory protein, C terminal AVL55_16165 SM00388 His Kinase A (phosphoacceptor) domain AVL55_16175 SM00530 Helix-turn-helix XRE-family like proteins AVL55_16190 SM00487 DEAD-like helicases superfamily AVL55_16240 SM00382 ATPases associated with a variety of cellular activities AVL55_16260 SM00530 Helix-turn-helix XRE-family like proteins AVL55_16275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_16280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_16280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_16315 SM00382 ATPases associated with a variety of cellular activities AVL55_16320 SM00382 ATPases associated with a variety of cellular activities AVL55_16325 SM00382 ATPases associated with a variety of cellular activities AVL55_16400 SM00421 helix_turn_helix, Lux Regulon AVL55_16400 SM00448 cheY-homologous receiver domain AVL55_16405 SM00091 PAS domain AVL55_16405 SM00387 Histidine kinase-like ATPases AVL55_16405 SM00388 His Kinase A (phosphoacceptor) domain AVL55_16405 SM00448 cheY-homologous receiver domain AVL55_16410 SM00897 FIST N domain AVL55_16410 SM01204 AVL55_16410 AVL55_16415 SM00900 AVL55_16415 AVL55_16425 SM00421 helix_turn_helix, Lux Regulon AVL55_16425 SM00448 cheY-homologous receiver domain AVL55_16435 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_16435 SM00091 PAS domain AVL55_16435 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_16470 SM00965 Secretin and TonB N terminus short domain AVL55_16495 SM00421 helix_turn_helix, Lux Regulon AVL55_16525 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AVL55_16530 SM00421 helix_turn_helix, Lux Regulon AVL55_16530 SM00448 cheY-homologous receiver domain AVL55_16535 SM00387 Histidine kinase-like ATPases AVL55_16545 SM00487 DEAD-like helicases superfamily AVL55_16545 SM00490 helicase superfamily c-terminal domain AVL55_16615 SM00155 Phospholipase D. Active site motifs. AVL55_16650 SM00849 Metallo-beta-lactamase superfamily AVL55_16655 SM00486 DNA polymerase type-B family AVL55_16695 SM00360 RNA recognition motif AVL55_16730 SM00986 Uracil DNA glycosylase superfamily AVL55_16730 SM00987 UreE urease accessory protein, C-terminal domain AVL55_16735 SM00052 Putative diguanylate phosphodiesterase AVL55_16735 SM00267 diguanylate cyclase AVL55_16735 SM00448 cheY-homologous receiver domain AVL55_16815 SM00173 Ras subfamily of RAS small GTPases AVL55_16815 SM00175 Rab subfamily of small GTPases AVL55_16820 SM00052 Putative diguanylate phosphodiesterase AVL55_16820 SM00267 diguanylate cyclase AVL55_16830 SM00563 Phosphate acyltransferases AVL55_16835 SM00563 Phosphate acyltransferases AVL55_16955 SM00849 Metallo-beta-lactamase superfamily AVL55_16975 SM00100 Cyclic nucleotide-monophosphate binding domain AVL55_17010 SM00354 helix_turn _helix lactose operon repressor AVL55_17015 SM00849 Metallo-beta-lactamase superfamily AVL55_17060 SM00900 AVL55_17060 AVL55_17140 SM00028 Tetratricopeptide repeats AVL55_17145 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AVL55_17155 SM00267 diguanylate cyclase AVL55_17155 SM00448 cheY-homologous receiver domain AVL55_17160 SM00479 AVL55_17160 AVL55_17165 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL55_17180 SM00387 Histidine kinase-like ATPases AVL55_17180 SM00388 His Kinase A (phosphoacceptor) domain AVL55_17180 SM00448 cheY-homologous receiver domain AVL55_17210 SM00421 helix_turn_helix, Lux Regulon AVL55_17210 SM00448 cheY-homologous receiver domain AVL55_17245 SM01321 AVL55_17245 AVL55_17265 SM00984 UDP binding domain AVL55_17490 SM00662 RNA polymerases D AVL55_17495 SM00363 S4 RNA-binding domain AVL55_17495 SM01390 AVL55_17495 AVL55_17560 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AVL55_17565 SM01374 AVL55_17565 AVL55_17580 SM00967 RNA 2'-O ribose methyltransferase substrate binding AVL55_17585 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_17585 SM00357 Cold shock protein domain AVL55_17585 SM00955 AVL55_17585 AVL55_17620 SM00671 Sel1-like repeats. AVL55_17645 SM00062 Bacterial periplasmic substrate-binding proteins AVL55_17650 SM00387 Histidine kinase-like ATPases AVL55_17650 SM00388 His Kinase A (phosphoacceptor) domain AVL55_17650 SM00448 cheY-homologous receiver domain AVL55_17670 SM00344 helix_turn_helix ASNC type AVL55_17680 SM00357 Cold shock protein domain AVL55_17710 SM00448 cheY-homologous receiver domain AVL55_17730 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AVL55_17795 SM00382 ATPases associated with a variety of cellular activities AVL55_17800 SM00421 helix_turn_helix, Lux Regulon AVL55_17820 SM00530 Helix-turn-helix XRE-family like proteins AVL55_17825 SM00382 ATPases associated with a variety of cellular activities AVL55_17825 SM01086 C-terminal, D2-small domain, of ClpB protein AVL55_17850 SM00487 DEAD-like helicases superfamily AVL55_17850 SM00490 helicase superfamily c-terminal domain AVL55_17865 SM00919 Malic enzyme, NAD binding domain AVL55_17865 SM01274 AVL55_17865 AVL55_17915 SM00052 Putative diguanylate phosphodiesterase AVL55_17930 SM00382 ATPases associated with a variety of cellular activities AVL55_17935 SM00382 ATPases associated with a variety of cellular activities AVL55_17935 SM00962 SRP54-type protein, GTPase domain AVL55_18010 SM00052 Putative diguanylate phosphodiesterase AVL55_18025 SM00382 ATPases associated with a variety of cellular activities AVL55_18030 SM00448 cheY-homologous receiver domain AVL55_18030 SM00862 Transcriptional regulatory protein, C terminal AVL55_18035 SM00387 Histidine kinase-like ATPases AVL55_18035 SM00388 His Kinase A (phosphoacceptor) domain AVL55_18045 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL55_18095 SM00028 Tetratricopeptide repeats AVL55_18135 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AVL55_18190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_18220 SM00838 Elongation factor G C-terminus AVL55_18220 SM00889 Elongation factor G, domain IV AVL55_18235 SM00663 RNA polymerase I subunit A N-terminus AVL55_18260 SM00649 Ribosomal protein L11/L12 AVL55_18275 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AVL55_18275 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AVL55_18290 SM00382 ATPases associated with a variety of cellular activities AVL55_18315 SM00487 DEAD-like helicases superfamily AVL55_18315 SM00490 helicase superfamily c-terminal domain AVL55_18355 SM00642 Alpha-amylase domain AVL55_18390 SM00487 DEAD-like helicases superfamily AVL55_18390 SM00490 helicase superfamily c-terminal domain AVL55_18415 SM00841 Elongation factor P, C-terminal AVL55_18415 SM01185 AVL55_18415 AVL55_18495 SM00244 prohibitin homologues AVL55_18500 SM00244 prohibitin homologues AVL55_18520 SM01340 AVL55_18520 AVL55_18525 SM00257 Lysin motif AVL55_18525 SM00646 AVL55_18525 AVL55_18585 SM00382 ATPases associated with a variety of cellular activities AVL55_18615 SM00849 Metallo-beta-lactamase superfamily AVL55_18620 SM00448 cheY-homologous receiver domain AVL55_18620 SM00862 Transcriptional regulatory protein, C terminal AVL55_18625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_18625 SM00387 Histidine kinase-like ATPases AVL55_18625 SM00388 His Kinase A (phosphoacceptor) domain AVL55_18670 SM00382 ATPases associated with a variety of cellular activities AVL55_18680 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_18685 SM00387 Histidine kinase-like ATPases AVL55_18690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_18705 SM00382 ATPases associated with a variety of cellular activities AVL55_18710 SM00382 ATPases associated with a variety of cellular activities AVL55_18735 SM00382 ATPases associated with a variety of cellular activities AVL55_18835 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL55_18850 SM00867 YceI-like domain AVL55_18880 SM00829 Enoylreductase AVL55_18885 SM00267 diguanylate cyclase AVL55_18890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_18890 SM00387 Histidine kinase-like ATPases AVL55_18890 SM00388 His Kinase A (phosphoacceptor) domain AVL55_18890 SM00448 cheY-homologous receiver domain AVL55_18915 SM00487 DEAD-like helicases superfamily AVL55_18925 SM00487 DEAD-like helicases superfamily AVL55_18925 SM00490 helicase superfamily c-terminal domain AVL55_18950 SM00530 Helix-turn-helix XRE-family like proteins AVL55_18960 SM00420 helix_turn_helix, Deoxyribose operon repressor AVL55_18960 SM01134 AVL55_18960 AVL55_18975 SM00267 diguanylate cyclase AVL55_18990 SM00342 helix_turn_helix, arabinose operon control protein AVL55_18990 SM01009 AlkA N-terminal domain AVL55_19020 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AVL55_19020 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AVL55_19070 SM00965 Secretin and TonB N terminus short domain AVL55_19130 SM00346 helix_turn_helix isocitrate lyase regulation AVL55_19150 SM00883 Chaperonin 10 Kd subunit AVL55_19185 SM00878 Biotin carboxylase C-terminal domain AVL55_19205 SM00479 AVL55_19205 AVL55_19205 SM00990 AVL55_19205 AVL55_19235 SM00062 Bacterial periplasmic substrate-binding proteins AVL55_19255 SM00798 AICARFT/IMPCHase bienzyme AVL55_19255 SM00851 MGS-like domain AVL55_19265 SM01209 AVL55_19265 AVL55_19265 SM01210 AVL55_19265 AVL55_19270 SM00047 Lysozyme subfamily 2 AVL55_19295 SM00448 cheY-homologous receiver domain AVL55_19295 SM00862 Transcriptional regulatory protein, C terminal AVL55_19300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_19300 SM00387 Histidine kinase-like ATPases AVL55_19300 SM00388 His Kinase A (phosphoacceptor) domain AVL55_19325 SM00363 S4 RNA-binding domain AVL55_19340 SM00382 ATPases associated with a variety of cellular activities AVL55_19395 SM00849 Metallo-beta-lactamase superfamily AVL55_19425 SM00867 YceI-like domain AVL55_19460 SM00382 ATPases associated with a variety of cellular activities AVL55_19480 SM00320 WD40 repeats AVL55_19500 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_19500 SM00732 Likely ribonuclease with RNase H fold. AVL55_19530 SM00631 AVL55_19530 AVL55_19630 SM00563 Phosphate acyltransferases AVL55_19650 SM00382 ATPases associated with a variety of cellular activities AVL55_19715 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AVL55_19805 SM00530 Helix-turn-helix XRE-family like proteins AVL55_19810 SM00487 DEAD-like helicases superfamily AVL55_19820 SM00506 Appr-1"-p processing enzyme AVL55_19885 SM00422 helix_turn_helix, mercury resistance AVL55_19940 SM00354 helix_turn _helix lactose operon repressor AVL55_19960 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_19970 SM01144 AVL55_19970 AVL55_19995 SM00382 ATPases associated with a variety of cellular activities AVL55_20035 SM00470 ParB-like nuclease domain AVL55_20050 SM01228 AVL55_20050