locus-tag class description AMBLS11_00005 PF11638 DnaA N-terminal domain AMBLS11_00005 PF00308 Bacterial dnaA protein AMBLS11_00005 PF08299 Bacterial dnaA protein helix-turn-helix AMBLS11_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AMBLS11_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AMBLS11_00010 PF02767 DNA polymerase III beta subunit, central domain AMBLS11_00015 PF02463 RecF/RecN/SMC N terminal domain AMBLS11_00020 PF01751 Toprim domain AMBLS11_00020 PF18053 DNA gyrase B subunit insert domain AMBLS11_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_00020 PF00204 DNA gyrase B AMBLS11_00020 PF00986 DNA gyrase B subunit, carboxyl terminus AMBLS11_00030 PF05746 DALR anticodon binding domain AMBLS11_00030 PF02092 Glycyl-tRNA synthetase beta subunit AMBLS11_00035 PF02091 Glycyl-tRNA synthetase alpha subunit AMBLS11_00040 PF03352 Methyladenine glycosylase AMBLS11_00050 PF04220 Der GTPase activator (YihI) AMBLS11_00060 PF00034 Cytochrome c AMBLS11_00065 PF01926 50S ribosome-binding GTPase AMBLS11_00070 PF01612 3'-5' exonuclease AMBLS11_00070 PF01367 5'-3' exonuclease, C-terminal SAM fold AMBLS11_00070 PF00476 DNA polymerase family A AMBLS11_00070 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMBLS11_00080 PF02386 Cation transport protein AMBLS11_00090 PF13333 Integrase core domain AMBLS11_00090 PF00665 Integrase core domain AMBLS11_00090 PF13276 HTH-like domain AMBLS11_00095 PF02080 TrkA-C domain AMBLS11_00095 PF02254 TrkA-N domain AMBLS11_00100 PF01189 16S rRNA methyltransferase RsmB/F AMBLS11_00100 PF01029 NusB family AMBLS11_00105 PF02911 Formyl transferase, C-terminal domain AMBLS11_00105 PF00551 Formyl transferase AMBLS11_00110 PF01327 Polypeptide deformylase AMBLS11_00120 PF02481 DNA recombination-mediator protein A AMBLS11_00120 PF17782 DprA winged helix domain AMBLS11_00125 PF04361 Protein of unknown function (DUF494) AMBLS11_00135 PF01300 Telomere recombination AMBLS11_00140 PF01218 Coproporphyrinogen III oxidase AMBLS11_00145 PF03922 OmpW family AMBLS11_00155 PF01488 Shikimate / quinate 5-dehydrogenase AMBLS11_00155 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMBLS11_00155 PF08501 Shikimate dehydrogenase substrate binding domain AMBLS11_00160 PF00132 Bacterial transferase hexapeptide (six repeats) AMBLS11_00180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMBLS11_00180 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMBLS11_00180 PF01336 OB-fold nucleic acid binding domain AMBLS11_00180 PF02811 PHP domain AMBLS11_00180 PF14579 Helix-hairpin-helix motif AMBLS11_00210 PF04389 Peptidase family M28 AMBLS11_00210 PF02225 PA domain AMBLS11_00215 PF00440 Bacterial regulatory proteins, tetR family AMBLS11_00220 PF02441 Flavoprotein AMBLS11_00220 PF04127 DNA / pantothenate metabolism flavoprotein AMBLS11_00225 PF04002 RadC-like JAB domain AMBLS11_00245 PF06082 Exopolysaccharide biosynthesis protein YbjH AMBLS11_00250 PF00830 Ribosomal L28 family AMBLS11_00255 PF00471 Ribosomal protein L33 AMBLS11_00265 PF06827 Zinc finger found in FPG and IleRS AMBLS11_00265 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMBLS11_00265 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMBLS11_00270 PF01467 Cytidylyltransferase-like AMBLS11_00290 PF00563 EAL domain AMBLS11_00290 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_00290 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_00295 PF00155 Aminotransferase class I and II AMBLS11_00300 PF00107 Zinc-binding dehydrogenase AMBLS11_00300 PF08240 Alcohol dehydrogenase GroES-like domain AMBLS11_00305 PF00581 Rhodanese-like domain AMBLS11_00310 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AMBLS11_00310 PF01694 Rhomboid family AMBLS11_00320 PF04345 Chorismate lyase AMBLS11_00325 PF01040 UbiA prenyltransferase family AMBLS11_00330 PF04380 Membrane fusogenic activity AMBLS11_00335 PF13361 UvrD-like helicase C-terminal domain AMBLS11_00335 PF00580 UvrD/REP helicase N-terminal domain AMBLS11_00340 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_00340 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_00340 PF00563 EAL domain AMBLS11_00345 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMBLS11_00370 PF01381 Helix-turn-helix AMBLS11_00370 PF00145 C-5 cytosine-specific DNA methylase AMBLS11_00375 PF03852 DNA mismatch endonuclease Vsr AMBLS11_00400 PF00271 Helicase conserved C-terminal domain AMBLS11_00400 PF17757 UvrB interaction domain AMBLS11_00400 PF00270 DEAD/DEAH box helicase AMBLS11_00400 PF02559 CarD-like/TRCF domain AMBLS11_00400 PF03461 TRCF domain AMBLS11_00405 PF00271 Helicase conserved C-terminal domain AMBLS11_00405 PF17757 UvrB interaction domain AMBLS11_00405 PF12344 Ultra-violet resistance protein B AMBLS11_00405 PF02151 UvrB/uvrC motif AMBLS11_00405 PF04851 Type III restriction enzyme, res subunit AMBLS11_00415 PF13533 Biotin-lipoyl like AMBLS11_00420 PF00005 ABC transporter AMBLS11_00430 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_00430 PF00593 TonB dependent receptor AMBLS11_00440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMBLS11_00440 PF02770 Acyl-CoA dehydrogenase, middle domain AMBLS11_00440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMBLS11_00445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_00445 PF03466 LysR substrate binding domain AMBLS11_00450 PF00753 Metallo-beta-lactamase superfamily AMBLS11_00455 PF04317 YcjX-like family, DUF463 AMBLS11_00470 PF04055 Radical SAM superfamily AMBLS11_00470 PF06968 Biotin and Thiamin Synthesis associated domain AMBLS11_00475 PF05690 Thiazole biosynthesis protein ThiG AMBLS11_00485 PF00899 ThiF family AMBLS11_00490 PF02581 Thiamine monophosphate synthase AMBLS11_00495 PF13667 ThiC-associated domain AMBLS11_00495 PF01964 Radical SAM ThiC family AMBLS11_00500 PF07219 HemY protein N-terminus AMBLS11_00500 PF07719 Tetratricopeptide repeat AMBLS11_00505 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AMBLS11_00510 PF02602 Uroporphyrinogen-III synthase HemD AMBLS11_00515 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMBLS11_00515 PF03900 Porphobilinogen deaminase, C-terminal domain AMBLS11_00520 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_00520 PF00072 Response regulator receiver domain AMBLS11_00530 PF00625 Guanylate kinase AMBLS11_00535 PF01192 RNA polymerase Rpb6 AMBLS11_00540 PF04607 Region found in RelA / SpoT proteins AMBLS11_00540 PF13291 ACT domain AMBLS11_00540 PF02824 TGS domain AMBLS11_00545 PF01042 Endoribonuclease L-PSP AMBLS11_00550 PF12105 SpoU, rRNA methylase, C-terminal AMBLS11_00550 PF00588 SpoU rRNA Methylase family AMBLS11_00555 PF00270 DEAD/DEAH box helicase AMBLS11_00555 PF00271 Helicase conserved C-terminal domain AMBLS11_00555 PF17191 RecG wedge domain AMBLS11_00560 PF04445 Putative SAM-dependent methyltransferase AMBLS11_00565 PF08534 Redoxin AMBLS11_00580 PF00528 Binding-protein-dependent transport system inner membrane component AMBLS11_00585 PF00005 ABC transporter AMBLS11_00585 PF08402 TOBE domain AMBLS11_00590 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_00590 PF00563 EAL domain AMBLS11_00590 PF13188 PAS domain AMBLS11_00590 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_00610 PF00924 Mechanosensitive ion channel AMBLS11_00610 PF12795 Mechanosensitive ion channel porin domain AMBLS11_00610 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMBLS11_00625 PF00563 EAL domain AMBLS11_00625 PF04940 Sensors of blue-light using FAD AMBLS11_00630 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_00635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_00635 PF03466 LysR substrate binding domain AMBLS11_00640 PF01810 LysE type translocator AMBLS11_00645 PF00893 Small Multidrug Resistance protein AMBLS11_00660 PF00529 HlyD membrane-fusion protein of T1SS AMBLS11_00660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMBLS11_00665 PF00873 AcrB/AcrD/AcrF family AMBLS11_00675 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AMBLS11_00675 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AMBLS11_00680 PF00850 Histone deacetylase domain AMBLS11_00685 PF00462 Glutaredoxin AMBLS11_00695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_00695 PF00672 HAMP domain AMBLS11_00695 PF12729 Four helix bundle sensory module for signal transduction AMBLS11_00705 PF11737 Protein of unknown function (DUF3300) AMBLS11_00710 PF00925 GTP cyclohydrolase II AMBLS11_00715 PF00563 EAL domain AMBLS11_00715 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_00715 PF08448 PAS fold AMBLS11_00735 PF16124 RecQ zinc-binding AMBLS11_00735 PF00570 HRDC domain AMBLS11_00735 PF00271 Helicase conserved C-terminal domain AMBLS11_00735 PF09382 RQC domain AMBLS11_00735 PF00270 DEAD/DEAH box helicase AMBLS11_00740 PF03061 Thioesterase superfamily AMBLS11_00745 PF03448 MgtE intracellular N domain AMBLS11_00745 PF01769 Divalent cation transporter AMBLS11_00745 PF00571 CBS domain AMBLS11_00750 PF00892 EamA-like transporter family AMBLS11_00755 PF08448 PAS fold AMBLS11_00755 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_00760 PF13361 UvrD-like helicase C-terminal domain AMBLS11_00760 PF00580 UvrD/REP helicase N-terminal domain AMBLS11_00765 PF06426 Serine acetyltransferase, N-terminal AMBLS11_00765 PF00132 Bacterial transferase hexapeptide (six repeats) AMBLS11_00770 PF08448 PAS fold AMBLS11_00770 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_00775 PF13419 Haloacid dehalogenase-like hydrolase AMBLS11_00790 PF01678 Diaminopimelate epimerase AMBLS11_00795 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMBLS11_00795 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMBLS11_00810 PF01569 PAP2 superfamily AMBLS11_00815 PF03737 Aldolase/RraA AMBLS11_00825 PF02441 Flavoprotein AMBLS11_00830 PF02875 Mur ligase family, glutamate ligase domain AMBLS11_00830 PF08245 Mur ligase middle domain AMBLS11_00830 PF01225 Mur ligase family, catalytic domain AMBLS11_00835 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AMBLS11_00845 PF00719 Inorganic pyrophosphatase AMBLS11_00855 PF00701 Dihydrodipicolinate synthetase family AMBLS11_00890 PF17755 UvrA DNA-binding domain AMBLS11_00890 PF00005 ABC transporter AMBLS11_00890 PF17760 UvrA interaction domain AMBLS11_00895 PF07690 Major Facilitator Superfamily AMBLS11_00900 PF13419 Haloacid dehalogenase-like hydrolase AMBLS11_00915 PF00356 Bacterial regulatory proteins, lacI family AMBLS11_00920 PF01263 Aldose 1-epimerase AMBLS11_00925 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AMBLS11_00925 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AMBLS11_00930 PF08544 GHMP kinases C terminal AMBLS11_00930 PF00288 GHMP kinases N terminal domain AMBLS11_00930 PF10509 Galactokinase galactose-binding signature AMBLS11_00935 PF00474 Sodium:solute symporter family AMBLS11_00940 PF00436 Single-strand binding protein family AMBLS11_00955 PF16363 GDP-mannose 4,6 dehydratase AMBLS11_00960 PF16355 Domain of unknown function (DUF4982) AMBLS11_00960 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMBLS11_00960 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMBLS11_00960 PF00703 Glycosyl hydrolases family 2 AMBLS11_00960 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMBLS11_00970 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMBLS11_00970 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMBLS11_00975 PF08220 DeoR-like helix-turn-helix domain AMBLS11_00975 PF00455 DeoR C terminal sensor domain AMBLS11_00980 PF01266 FAD dependent oxidoreductase AMBLS11_00980 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMBLS11_00995 PF08334 Type II secretion system (T2SS), protein G AMBLS11_00995 PF07963 Prokaryotic N-terminal methylation motif AMBLS11_01005 PF04085 rod shape-determining protein MreC AMBLS11_01010 PF04093 rod shape-determining protein MreD AMBLS11_01015 PF02545 Maf-like protein AMBLS11_01020 PF00575 S1 RNA binding domain AMBLS11_01020 PF10150 Ribonuclease E/G family AMBLS11_01030 PF00795 Carbon-nitrogen hydrolase AMBLS11_01035 PF01523 Putative modulator of DNA gyrase AMBLS11_01045 PF04751 Protein of unknown function (DUF615) AMBLS11_01050 PF01523 Putative modulator of DNA gyrase AMBLS11_01060 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMBLS11_01060 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMBLS11_01060 PF16353 Domain of unknown function(DUF4981) AMBLS11_01060 PF00703 Glycosyl hydrolases family 2 AMBLS11_01060 PF02929 Beta galactosidase small chain AMBLS11_01065 PF00072 Response regulator receiver domain AMBLS11_01065 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_01070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_01070 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_01070 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMBLS11_01075 PF00534 Glycosyl transferases group 1 AMBLS11_01075 PF08323 Starch synthase catalytic domain AMBLS11_01080 PF05175 Methyltransferase small domain AMBLS11_01080 PF08468 Methyltransferase small domain N-terminal AMBLS11_01085 PF02390 Putative methyltransferase AMBLS11_01095 PF14815 NUDIX domain AMBLS11_01095 PF00730 HhH-GPD superfamily base excision DNA repair protein AMBLS11_01095 PF00633 Helix-hairpin-helix motif AMBLS11_01100 PF04362 Bacterial Fe(2+) trafficking AMBLS11_01125 PF02796 Helix-turn-helix domain of resolvase AMBLS11_01125 PF00239 Resolvase, N terminal domain AMBLS11_01195 PF02911 Formyl transferase, C-terminal domain AMBLS11_01195 PF00551 Formyl transferase AMBLS11_01200 PF00672 HAMP domain AMBLS11_01200 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_01200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_01205 PF00072 Response regulator receiver domain AMBLS11_01205 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_01225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMBLS11_01230 PF00873 AcrB/AcrD/AcrF family AMBLS11_01240 PF00111 2Fe-2S iron-sulfur cluster binding domain AMBLS11_01240 PF00970 Oxidoreductase FAD-binding domain AMBLS11_01240 PF00175 Oxidoreductase NAD-binding domain AMBLS11_01280 PF01565 FAD binding domain AMBLS11_01280 PF08031 Berberine and berberine like AMBLS11_01315 PF00175 Oxidoreductase NAD-binding domain AMBLS11_01315 PF00970 Oxidoreductase FAD-binding domain AMBLS11_01315 PF00042 Globin AMBLS11_01335 PF01750 Hydrogenase maturation protease AMBLS11_01345 PF09278 MerR, DNA binding AMBLS11_01345 PF00376 MerR family regulatory protein AMBLS11_01350 PF00403 Heavy-metal-associated domain AMBLS11_01420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMBLS11_01420 PF00529 HlyD membrane-fusion protein of T1SS AMBLS11_01425 PF00873 AcrB/AcrD/AcrF family AMBLS11_01430 PF16916 Dimerisation domain of Zinc Transporter AMBLS11_01430 PF01545 Cation efflux family AMBLS11_01445 PF13520 Amino acid permease AMBLS11_01455 PF00394 Multicopper oxidase AMBLS11_01455 PF07732 Multicopper oxidase AMBLS11_01455 PF07731 Multicopper oxidase AMBLS11_01495 PF17200 Single Cache domain 2 AMBLS11_01495 PF00672 HAMP domain AMBLS11_01495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_01500 PF00072 Response regulator receiver domain AMBLS11_01505 PF01627 Hpt domain AMBLS11_01505 PF09078 CheY binding AMBLS11_01505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_01505 PF01584 CheW-like domain AMBLS11_01505 PF02895 Signal transducing histidine kinase, homodimeric domain AMBLS11_01510 PF01584 CheW-like domain AMBLS11_01515 PF13426 PAS domain AMBLS11_01515 PF08447 PAS fold AMBLS11_01515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_01520 PF03705 CheR methyltransferase, all-alpha domain AMBLS11_01520 PF01739 CheR methyltransferase, SAM binding domain AMBLS11_01525 PF03975 CheD chemotactic sensory transduction AMBLS11_01530 PF00072 Response regulator receiver domain AMBLS11_01530 PF01339 CheB methylesterase AMBLS11_01535 PF00672 HAMP domain AMBLS11_01535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_01535 PF17200 Single Cache domain 2 AMBLS11_01540 PF00072 Response regulator receiver domain AMBLS11_01545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_01545 PF02895 Signal transducing histidine kinase, homodimeric domain AMBLS11_01545 PF01627 Hpt domain AMBLS11_01545 PF09078 CheY binding AMBLS11_01545 PF01584 CheW-like domain AMBLS11_01550 PF01584 CheW-like domain AMBLS11_01555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_01555 PF13426 PAS domain AMBLS11_01555 PF08447 PAS fold AMBLS11_01560 PF13426 PAS domain AMBLS11_01560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_01560 PF08447 PAS fold AMBLS11_01565 PF01739 CheR methyltransferase, SAM binding domain AMBLS11_01565 PF03705 CheR methyltransferase, all-alpha domain AMBLS11_01570 PF03975 CheD chemotactic sensory transduction AMBLS11_01575 PF01339 CheB methylesterase AMBLS11_01575 PF00072 Response regulator receiver domain AMBLS11_01585 PF13419 Haloacid dehalogenase-like hydrolase AMBLS11_01595 PF00356 Bacterial regulatory proteins, lacI family AMBLS11_01595 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMBLS11_01605 PF01204 Trehalase AMBLS11_01620 PF13419 Haloacid dehalogenase-like hydrolase AMBLS11_01630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_01630 PF00072 Response regulator receiver domain AMBLS11_01630 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_01630 PF09308 LuxQ, periplasmic AMBLS11_01645 PF00356 Bacterial regulatory proteins, lacI family AMBLS11_01650 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMBLS11_01650 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMBLS11_01660 PF03825 Nucleoside H+ symporter AMBLS11_01665 PF01261 Xylose isomerase-like TIM barrel AMBLS11_01670 PF00732 GMC oxidoreductase AMBLS11_01670 PF05199 GMC oxidoreductase AMBLS11_01685 PF00465 Iron-containing alcohol dehydrogenase AMBLS11_01690 PF01063 Amino-transferase class IV AMBLS11_01695 PF00300 Histidine phosphatase superfamily (branch 1) AMBLS11_01705 PF00330 Aconitase family (aconitate hydratase) AMBLS11_01705 PF00694 Aconitase C-terminal domain AMBLS11_01710 PF00437 Type II/IV secretion system protein AMBLS11_01715 PF00338 Ribosomal protein S10p/S20e AMBLS11_01720 PF00297 Ribosomal protein L3 AMBLS11_01725 PF00573 Ribosomal protein L4/L1 family AMBLS11_01730 PF00276 Ribosomal protein L23 AMBLS11_01735 PF03947 Ribosomal Proteins L2, C-terminal domain AMBLS11_01735 PF00181 Ribosomal Proteins L2, RNA binding domain AMBLS11_01740 PF00203 Ribosomal protein S19 AMBLS11_01745 PF00237 Ribosomal protein L22p/L17e AMBLS11_01750 PF00189 Ribosomal protein S3, C-terminal domain AMBLS11_01750 PF07650 KH domain AMBLS11_01755 PF00252 Ribosomal protein L16p/L10e AMBLS11_01760 PF00831 Ribosomal L29 protein AMBLS11_01765 PF00366 Ribosomal protein S17 AMBLS11_01775 PF00534 Glycosyl transferases group 1 AMBLS11_01775 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMBLS11_01795 PF02743 Cache domain AMBLS11_01795 PF00672 HAMP domain AMBLS11_01795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_01800 PF01432 Peptidase family M3 AMBLS11_01815 PF00551 Formyl transferase AMBLS11_01815 PF01842 ACT domain AMBLS11_01825 PF04408 Helicase associated domain (HA2) AMBLS11_01825 PF00271 Helicase conserved C-terminal domain AMBLS11_01825 PF08482 ATP-dependent helicase C-terminal AMBLS11_01825 PF00270 DEAD/DEAH box helicase AMBLS11_01830 PF13406 Transglycosylase SLT domain AMBLS11_01835 PF00905 Penicillin binding protein transpeptidase domain AMBLS11_01835 PF14814 Bifunctional transglycosylase second domain AMBLS11_01835 PF00912 Transglycosylase AMBLS11_01850 PF05661 Protein of unknown function (DUF808) AMBLS11_01860 PF12833 Helix-turn-helix domain AMBLS11_01870 PF00543 Nitrogen regulatory protein P-II AMBLS11_01875 PF00909 Ammonium Transporter Family AMBLS11_01885 PF04261 Dyp-type peroxidase family AMBLS11_01890 PF00202 Aminotransferase class-III AMBLS11_01895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMBLS11_01895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMBLS11_01910 PF00873 AcrB/AcrD/AcrF family AMBLS11_01920 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMBLS11_01920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_01920 PF00072 Response regulator receiver domain AMBLS11_01920 PF01627 Hpt domain AMBLS11_01920 PF00672 HAMP domain AMBLS11_01920 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_01925 PF00521 DNA gyrase/topoisomerase IV, subunit A AMBLS11_01925 PF03989 DNA gyrase C-terminal domain, beta-propeller AMBLS11_01935 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_01935 PF00563 EAL domain AMBLS11_01935 PF13188 PAS domain AMBLS11_01935 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_01945 PF00171 Aldehyde dehydrogenase family AMBLS11_01950 PF04958 Arginine N-succinyltransferase beta subunit AMBLS11_01955 PF00202 Aminotransferase class-III AMBLS11_01965 PF00117 Glutamine amidotransferase class-I AMBLS11_01970 PF00579 tRNA synthetases class I (W and Y) AMBLS11_01975 PF00834 Ribulose-phosphate 3 epimerase family AMBLS11_01995 PF02086 D12 class N6 adenine-specific DNA methyltransferase AMBLS11_02005 PF01761 3-dehydroquinate synthase AMBLS11_02010 PF01202 Shikimate kinase AMBLS11_02015 PF07660 Secretin and TonB N terminus short domain AMBLS11_02015 PF00263 Bacterial type II and III secretion system protein AMBLS11_02015 PF11741 AMIN domain AMBLS11_02015 PF03958 Bacterial type II/III secretion system short domain AMBLS11_02040 PF00912 Transglycosylase AMBLS11_02040 PF17092 Penicillin-binding protein OB-like domain AMBLS11_02040 PF00905 Penicillin binding protein transpeptidase domain AMBLS11_02045 PF03949 Malic enzyme, NAD binding domain AMBLS11_02045 PF00390 Malic enzyme, N-terminal domain AMBLS11_02055 PF02798 Glutathione S-transferase, N-terminal domain AMBLS11_02065 PF00199 Catalase AMBLS11_02065 PF06628 Catalase-related immune-responsive AMBLS11_02080 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_02080 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_02080 PF00563 EAL domain AMBLS11_02085 PF00583 Acetyltransferase (GNAT) family AMBLS11_02085 PF00696 Amino acid kinase family AMBLS11_02090 PF00206 Lyase AMBLS11_02090 PF14698 Argininosuccinate lyase C-terminal AMBLS11_02095 PF00764 Arginosuccinate synthase AMBLS11_02100 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMBLS11_02100 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMBLS11_02105 PF00696 Amino acid kinase family AMBLS11_02110 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMBLS11_02110 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMBLS11_02115 PF02142 MGS-like domain AMBLS11_02125 PF00072 Response regulator receiver domain AMBLS11_02125 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_02130 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_02130 PF16527 Two-component sensor protein CpxA, periplasmic domain AMBLS11_02130 PF00672 HAMP domain AMBLS11_02130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_02135 PF12146 Serine aminopeptidase, S33 AMBLS11_02140 PF00588 SpoU rRNA Methylase family AMBLS11_02145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMBLS11_02150 PF00005 ABC transporter AMBLS11_02150 PF12704 MacB-like periplasmic core domain AMBLS11_02150 PF02687 FtsX-like permease family AMBLS11_02155 PF02321 Outer membrane efflux protein AMBLS11_02160 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMBLS11_02160 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMBLS11_02165 PF02556 Preprotein translocase subunit SecB AMBLS11_02170 PF00462 Glutaredoxin AMBLS11_02175 PF00581 Rhodanese-like domain AMBLS11_02180 PF01551 Peptidase family M23 AMBLS11_02185 PF04748 Divergent polysaccharide deacetylase AMBLS11_02195 PF03009 Glycerophosphoryl diester phosphodiesterase family AMBLS11_02205 PF02666 Phosphatidylserine decarboxylase AMBLS11_02210 PF03193 RsgA GTPase AMBLS11_02215 PF00929 Exonuclease AMBLS11_02230 PF00593 TonB dependent receptor AMBLS11_02230 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_02240 PF13276 HTH-like domain AMBLS11_02240 PF00665 Integrase core domain AMBLS11_02240 PF13333 Integrase core domain AMBLS11_02245 PF13181 Tetratricopeptide repeat AMBLS11_02260 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMBLS11_02260 PF00205 Thiamine pyrophosphate enzyme, central domain AMBLS11_02260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMBLS11_02265 PF10369 Small subunit of acetolactate synthase AMBLS11_02275 PF02416 mttA/Hcf106 family AMBLS11_02280 PF02416 mttA/Hcf106 family AMBLS11_02285 PF00902 Sec-independent protein translocase protein (TatC) AMBLS11_02295 PF01026 TatD related DNase AMBLS11_02300 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_02300 PF01590 GAF domain AMBLS11_02300 PF00563 EAL domain AMBLS11_02300 PF00360 Phytochrome region AMBLS11_02305 PF00490 Delta-aminolevulinic acid dehydratase AMBLS11_02310 PF02541 Ppx/GppA phosphatase family AMBLS11_02315 PF00270 DEAD/DEAH box helicase AMBLS11_02315 PF00271 Helicase conserved C-terminal domain AMBLS11_02320 PF00085 Thioredoxin AMBLS11_02325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMBLS11_02325 PF07498 Rho termination factor, N-terminal domain AMBLS11_02325 PF07497 Rho termination factor, RNA-binding domain AMBLS11_02335 PF09308 LuxQ, periplasmic AMBLS11_02335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_02335 PF00072 Response regulator receiver domain AMBLS11_02335 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_02340 PF06965 Na+/H+ antiporter 1 AMBLS11_02345 PF00731 AIR carboxylase AMBLS11_02350 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMBLS11_02350 PF02222 ATP-grasp domain AMBLS11_02360 PF00210 Ferritin-like domain AMBLS11_02365 PF07995 Glucose / Sorbosone dehydrogenase AMBLS11_02370 PF00326 Prolyl oligopeptidase family AMBLS11_02370 PF07676 WD40-like Beta Propeller Repeat AMBLS11_02380 PF00085 Thioredoxin AMBLS11_02395 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AMBLS11_02400 PF00709 Adenylosuccinate synthetase AMBLS11_02405 PF00171 Aldehyde dehydrogenase family AMBLS11_02430 PF03553 Na+/H+ antiporter family AMBLS11_02435 PF00933 Glycosyl hydrolase family 3 N terminal domain AMBLS11_02445 PF07075 Protein of unknown function (DUF1343) AMBLS11_02450 PF01380 SIS domain AMBLS11_02455 PF01168 Alanine racemase, N-terminal domain AMBLS11_02455 PF00842 Alanine racemase, C-terminal domain AMBLS11_02470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMBLS11_02495 PF00464 Serine hydroxymethyltransferase AMBLS11_02500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_02500 PF03466 LysR substrate binding domain AMBLS11_02505 PF03831 PhnA domain AMBLS11_02505 PF08274 PhnA Zinc-Ribbon AMBLS11_02510 PF00583 Acetyltransferase (GNAT) family AMBLS11_02540 PF02371 Transposase IS116/IS110/IS902 family AMBLS11_02540 PF01548 Transposase AMBLS11_02575 PF00589 Phage integrase family AMBLS11_02575 PF13495 Phage integrase, N-terminal SAM-like domain AMBLS11_02580 PF00108 Thiolase, N-terminal domain AMBLS11_02580 PF02803 Thiolase, C-terminal domain AMBLS11_02585 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMBLS11_02585 PF00378 Enoyl-CoA hydratase/isomerase AMBLS11_02585 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMBLS11_02590 PF01464 Transglycosylase SLT domain AMBLS11_02590 PF10145 Phage-related minor tail protein AMBLS11_02590 PF01551 Peptidase family M23 AMBLS11_02595 PF00557 Metallopeptidase family M24 AMBLS11_02605 PF00348 Polyprenyl synthetase AMBLS11_02610 PF00829 Ribosomal prokaryotic L21 protein AMBLS11_02615 PF01016 Ribosomal L27 protein AMBLS11_02620 PF01926 50S ribosome-binding GTPase AMBLS11_02620 PF01018 GTP1/OBG AMBLS11_02630 PF00186 Dihydrofolate reductase AMBLS11_02635 PF04542 Sigma-70 region 2 AMBLS11_02635 PF04539 Sigma-70 region 3 AMBLS11_02635 PF04545 Sigma-70, region 4 AMBLS11_02635 PF00140 Sigma-70 factor, region 1.2 AMBLS11_02640 PF01476 LysM domain AMBLS11_02640 PF01551 Peptidase family M23 AMBLS11_02645 PF09335 SNARE associated Golgi protein AMBLS11_02655 PF01142 tRNA pseudouridine synthase D (TruD) AMBLS11_02660 PF02542 YgbB family AMBLS11_02665 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMBLS11_02670 PF04977 Septum formation initiator AMBLS11_02680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_02680 PF17200 Single Cache domain 2 AMBLS11_02680 PF00672 HAMP domain AMBLS11_02685 PF14850 DNA-binding domain of Proline dehydrogenase AMBLS11_02685 PF00171 Aldehyde dehydrogenase family AMBLS11_02685 PF01619 Proline dehydrogenase AMBLS11_02685 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMBLS11_02705 PF02976 DNA mismatch repair enzyme MutH AMBLS11_02710 PF00293 NUDIX domain AMBLS11_02715 PF00391 PEP-utilising enzyme, mobile domain AMBLS11_02715 PF02896 PEP-utilising enzyme, TIM barrel domain AMBLS11_02715 PF01590 GAF domain AMBLS11_02715 PF05524 PEP-utilising enzyme, N-terminal AMBLS11_02720 PF01925 Sulfite exporter TauE/SafE AMBLS11_02725 PF01790 Prolipoprotein diacylglyceryl transferase AMBLS11_02730 PF00303 Thymidylate synthase AMBLS11_02735 PF01339 CheB methylesterase AMBLS11_02735 PF00072 Response regulator receiver domain AMBLS11_02740 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_02740 PF05230 MASE2 domain AMBLS11_02745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_02745 PF01627 Hpt domain AMBLS11_02745 PF00072 Response regulator receiver domain AMBLS11_02745 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMBLS11_02745 PF00672 HAMP domain AMBLS11_02745 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_02750 PF07690 Major Facilitator Superfamily AMBLS11_02765 PF00849 RNA pseudouridylate synthase AMBLS11_02770 PF12137 RNA polymerase recycling family C-terminal AMBLS11_02770 PF00271 Helicase conserved C-terminal domain AMBLS11_02770 PF18337 RapA N-terminal Tudor like domain AMBLS11_02770 PF18339 RapA N-terminal Tudor like domain 1 AMBLS11_02770 PF00176 SNF2 family N-terminal domain AMBLS11_02790 PF02562 PhoH-like protein AMBLS11_02790 PF13638 PIN domain AMBLS11_02800 PF10414 Sirohaem synthase dimerisation region AMBLS11_02800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMBLS11_02805 PF00271 Helicase conserved C-terminal domain AMBLS11_02805 PF00270 DEAD/DEAH box helicase AMBLS11_02805 PF12343 Cold shock protein DEAD box A AMBLS11_02805 PF03880 DbpA RNA binding domain AMBLS11_02825 PF02321 Outer membrane efflux protein AMBLS11_02830 PF00293 NUDIX domain AMBLS11_02840 PF00149 Calcineurin-like phosphoesterase AMBLS11_02845 PF05728 Uncharacterised protein family (UPF0227) AMBLS11_02850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_02850 PF01751 Toprim domain AMBLS11_02850 PF00204 DNA gyrase B AMBLS11_02850 PF00986 DNA gyrase B subunit, carboxyl terminus AMBLS11_02860 PF13419 Haloacid dehalogenase-like hydrolase AMBLS11_02880 PF04055 Radical SAM superfamily AMBLS11_02890 PF00152 tRNA synthetases class II (D, K and N) AMBLS11_02895 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_02895 PF00593 TonB dependent receptor AMBLS11_02905 PF13276 HTH-like domain AMBLS11_02905 PF00665 Integrase core domain AMBLS11_02905 PF13333 Integrase core domain AMBLS11_02915 PF13302 Acetyltransferase (GNAT) domain AMBLS11_02920 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMBLS11_02925 PF05175 Methyltransferase small domain AMBLS11_02935 PF01722 BolA-like protein AMBLS11_02945 PF03861 ANTAR domain AMBLS11_02945 PF08376 Nitrate and nitrite sensing AMBLS11_02955 PF01740 STAS domain AMBLS11_02955 PF00916 Sulfate permease family AMBLS11_02960 PF04324 BFD-like [2Fe-2S] binding domain AMBLS11_02960 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMBLS11_02960 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMBLS11_02960 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMBLS11_02960 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMBLS11_02965 PF13806 Rieske-like [2Fe-2S] domain AMBLS11_02980 PF10414 Sirohaem synthase dimerisation region AMBLS11_02980 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMBLS11_02980 PF14824 Sirohaem biosynthesis protein central AMBLS11_02985 PF00591 Glycosyl transferase family, a/b domain AMBLS11_02985 PF02885 Glycosyl transferase family, helical bundle domain AMBLS11_02990 PF00149 Calcineurin-like phosphoesterase AMBLS11_02990 PF02872 5'-nucleotidase, C-terminal domain AMBLS11_02995 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_03000 PF08447 PAS fold AMBLS11_03000 PF13426 PAS domain AMBLS11_03000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_03005 PF00005 ABC transporter AMBLS11_03010 PF00528 Binding-protein-dependent transport system inner membrane component AMBLS11_03015 PF00005 ABC transporter AMBLS11_03030 PF01323 DSBA-like thioredoxin domain AMBLS11_03035 PF00593 TonB dependent receptor AMBLS11_03035 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_03040 PF01636 Phosphotransferase enzyme family AMBLS11_03045 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMBLS11_03045 PF13746 4Fe-4S dicluster domain AMBLS11_03045 PF12801 4Fe-4S binding domain AMBLS11_03060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMBLS11_03060 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMBLS11_03060 PF02770 Acyl-CoA dehydrogenase, middle domain AMBLS11_03060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMBLS11_03075 PF13378 Enolase C-terminal domain-like AMBLS11_03075 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMBLS11_03080 PF00596 Class II Aldolase and Adducin N-terminal domain AMBLS11_03095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMBLS11_03100 PF00873 AcrB/AcrD/AcrF family AMBLS11_03115 PF00672 HAMP domain AMBLS11_03115 PF02743 Cache domain AMBLS11_03115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_03120 PF04542 Sigma-70 region 2 AMBLS11_03120 PF00140 Sigma-70 factor, region 1.2 AMBLS11_03120 PF04546 Sigma-70, non-essential region AMBLS11_03120 PF03979 Sigma-70 factor, region 1.1 AMBLS11_03120 PF04539 Sigma-70 region 3 AMBLS11_03120 PF04545 Sigma-70, region 4 AMBLS11_03125 PF01807 CHC2 zinc finger AMBLS11_03125 PF08278 DNA primase DnaG DnaB-binding AMBLS11_03125 PF10410 DnaB-helicase binding domain of primase AMBLS11_03125 PF08275 DNA primase catalytic core, N-terminal domain AMBLS11_03135 PF01165 Ribosomal protein S21 AMBLS11_03140 PF00814 Glycoprotease family AMBLS11_03150 PF02660 Glycerol-3-phosphate acyltransferase AMBLS11_03155 PF02152 Dihydroneopterin aldolase AMBLS11_03165 PF02673 Bacitracin resistance protein BacA AMBLS11_03170 PF01230 HIT domain AMBLS11_03185 PF03594 Benzoate membrane transport protein AMBLS11_03190 PF01381 Helix-turn-helix AMBLS11_03190 PF07883 Cupin domain AMBLS11_03195 PF04381 Putative exonuclease, RdgC AMBLS11_03200 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_03200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_03200 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMBLS11_03205 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_03205 PF00072 Response regulator receiver domain AMBLS11_03210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_03210 PF11808 Phosphate regulon sensor protein PhoR AMBLS11_03210 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_03210 PF00989 PAS fold AMBLS11_03215 PF12849 PBP superfamily domain AMBLS11_03240 PF01618 MotA/TolQ/ExbB proton channel family AMBLS11_03245 PF01618 MotA/TolQ/ExbB proton channel family AMBLS11_03250 PF02472 Biopolymer transport protein ExbD/TolR AMBLS11_03255 PF03544 Gram-negative bacterial TonB protein C-terminal AMBLS11_03265 PF00072 Response regulator receiver domain AMBLS11_03270 PF00072 Response regulator receiver domain AMBLS11_03270 PF00672 HAMP domain AMBLS11_03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_03270 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_03270 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMBLS11_03270 PF01627 Hpt domain AMBLS11_03280 PF00501 AMP-binding enzyme AMBLS11_03280 PF13193 AMP-binding enzyme C-terminal domain AMBLS11_03290 PF07995 Glucose / Sorbosone dehydrogenase AMBLS11_03295 PF11791 Aconitate B N-terminal domain AMBLS11_03295 PF06434 Aconitate hydratase 2 N-terminus AMBLS11_03295 PF00330 Aconitase family (aconitate hydratase) AMBLS11_03305 PF17149 Periplasmic sensor domain found in signal transduction proteins AMBLS11_03305 PF00672 HAMP domain AMBLS11_03305 PF01627 Hpt domain AMBLS11_03305 PF00072 Response regulator receiver domain AMBLS11_03305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_03305 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_03325 PF00330 Aconitase family (aconitate hydratase) AMBLS11_03325 PF06434 Aconitate hydratase 2 N-terminus AMBLS11_03325 PF11791 Aconitate B N-terminal domain AMBLS11_03335 PF00696 Amino acid kinase family AMBLS11_03335 PF01842 ACT domain AMBLS11_03340 PF00672 HAMP domain AMBLS11_03340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_03345 PF00149 Calcineurin-like phosphoesterase AMBLS11_03350 PF04379 ApaG domain AMBLS11_03355 PF00398 Ribosomal RNA adenine dimethylase AMBLS11_03360 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMBLS11_03365 PF00639 PPIC-type PPIASE domain AMBLS11_03365 PF09312 SurA N-terminal domain AMBLS11_03370 PF03968 OstA-like protein AMBLS11_03370 PF04453 LPS transport system D AMBLS11_03375 PF05099 Tellurite resistance protein TerB AMBLS11_03375 PF00226 DnaJ domain AMBLS11_03380 PF02899 Phage integrase, N-terminal SAM-like domain AMBLS11_03380 PF00589 Phage integrase family AMBLS11_03385 PF10411 Disulfide bond isomerase protein N-terminus AMBLS11_03385 PF13098 Thioredoxin-like domain AMBLS11_03390 PF17768 RecJ OB domain AMBLS11_03390 PF02272 DHHA1 domain AMBLS11_03390 PF01368 DHH family AMBLS11_03400 PF11967 Recombination protein O N terminal AMBLS11_03400 PF02565 Recombination protein O C terminal AMBLS11_03405 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMBLS11_03410 PF01648 4'-phosphopantetheinyl transferase superfamily AMBLS11_03415 PF05958 tRNA (Uracil-5-)-methyltransferase AMBLS11_03420 PF13291 ACT domain AMBLS11_03420 PF04607 Region found in RelA / SpoT proteins AMBLS11_03420 PF02824 TGS domain AMBLS11_03425 PF03819 MazG nucleotide pyrophosphohydrolase domain AMBLS11_03460 PF13193 AMP-binding enzyme C-terminal domain AMBLS11_03460 PF00501 AMP-binding enzyme AMBLS11_03470 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AMBLS11_03480 PF00535 Glycosyl transferase family 2 AMBLS11_03500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_03500 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_03500 PF08521 Two-component sensor kinase N-terminal AMBLS11_03505 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_03505 PF00072 Response regulator receiver domain AMBLS11_03515 PF00572 Ribosomal protein L13 AMBLS11_03520 PF00380 Ribosomal protein S9/S16 AMBLS11_03525 PF00355 Rieske [2Fe-2S] domain AMBLS11_03525 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMBLS11_03530 PF00033 Cytochrome b/b6/petB AMBLS11_03530 PF00032 Cytochrome b(C-terminal)/b6/petD AMBLS11_03535 PF02167 Cytochrome C1 family AMBLS11_03540 PF00043 Glutathione S-transferase, C-terminal domain AMBLS11_03540 PF02798 Glutathione S-transferase, N-terminal domain AMBLS11_03545 PF04386 Stringent starvation protein B AMBLS11_03560 PF00072 Response regulator receiver domain AMBLS11_03560 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_03565 PF03448 MgtE intracellular N domain AMBLS11_03565 PF01769 Divalent cation transporter AMBLS11_03565 PF00571 CBS domain AMBLS11_03570 PF00381 PTS HPr component phosphorylation site AMBLS11_03575 PF03668 P-loop ATPase protein family AMBLS11_03580 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMBLS11_03585 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMBLS11_03590 PF04963 Sigma-54 factor, core binding domain AMBLS11_03590 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMBLS11_03590 PF04552 Sigma-54, DNA binding domain AMBLS11_03595 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMBLS11_03595 PF00005 ABC transporter AMBLS11_03600 PF03968 OstA-like protein AMBLS11_03615 PF00571 CBS domain AMBLS11_03615 PF01380 SIS domain AMBLS11_03620 PF01699 Sodium/calcium exchanger protein AMBLS11_03625 PF00005 ABC transporter AMBLS11_03630 PF02405 Permease MlaE AMBLS11_03635 PF02470 MlaD protein AMBLS11_03640 PF05494 MlaC protein AMBLS11_03650 PF01722 BolA-like protein AMBLS11_03655 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMBLS11_03660 PF13180 PDZ domain AMBLS11_03665 PF00595 PDZ domain AMBLS11_03665 PF13180 PDZ domain AMBLS11_03675 PF03969 AFG1-like ATPase AMBLS11_03680 PF01709 Transcriptional regulator AMBLS11_03685 PF02371 Transposase IS116/IS110/IS902 family AMBLS11_03685 PF01548 Transposase AMBLS11_03695 PF14403 Circularly permuted ATP-grasp type 2 AMBLS11_03700 PF08379 Bacterial transglutaminase-like N-terminal region AMBLS11_03700 PF01841 Transglutaminase-like superfamily AMBLS11_03705 PF04168 A predicted alpha-helical domain with a conserved ER motif. AMBLS11_03705 PF14403 Circularly permuted ATP-grasp type 2 AMBLS11_03720 PF07549 SecD/SecF GG Motif AMBLS11_03720 PF02355 Protein export membrane protein AMBLS11_03720 PF02355 Protein export membrane protein AMBLS11_03720 PF07549 SecD/SecF GG Motif AMBLS11_03725 PF02080 TrkA-C domain AMBLS11_03725 PF03471 Transporter associated domain AMBLS11_03725 PF00999 Sodium/hydrogen exchanger family AMBLS11_03730 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_03730 PF00593 TonB dependent receptor AMBLS11_03735 PF00892 EamA-like transporter family AMBLS11_03745 PF00072 Response regulator receiver domain AMBLS11_03745 PF09308 LuxQ, periplasmic AMBLS11_03745 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_03750 PF13458 Periplasmic binding protein AMBLS11_03765 PF02772 S-adenosylmethionine synthetase, central domain AMBLS11_03765 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMBLS11_03765 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMBLS11_03770 PF02780 Transketolase, C-terminal domain AMBLS11_03770 PF00456 Transketolase, thiamine diphosphate binding domain AMBLS11_03770 PF02779 Transketolase, pyrimidine binding domain AMBLS11_03775 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMBLS11_03775 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMBLS11_03780 PF00162 Phosphoglycerate kinase AMBLS11_03785 PF00274 Fructose-bisphosphate aldolase class-I AMBLS11_03790 PF01219 Prokaryotic diacylglycerol kinase AMBLS11_03795 PF00884 Sulfatase AMBLS11_03795 PF08019 Phosphoethanolamine transferase EptA/EptB AMBLS11_03800 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_03800 PF00072 Response regulator receiver domain AMBLS11_03805 PF00672 HAMP domain AMBLS11_03805 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_03805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_03815 PF00529 HlyD membrane-fusion protein of T1SS AMBLS11_03815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMBLS11_03820 PF00873 AcrB/AcrD/AcrF family AMBLS11_03825 PF02321 Outer membrane efflux protein AMBLS11_03835 PF00326 Prolyl oligopeptidase family AMBLS11_03835 PF07676 WD40-like Beta Propeller Repeat AMBLS11_03840 PF02541 Ppx/GppA phosphatase family AMBLS11_03845 PF13089 Polyphosphate kinase N-terminal domain AMBLS11_03845 PF17941 Polyphosphate kinase C-terminal domain 1 AMBLS11_03845 PF13090 Polyphosphate kinase C-terminal domain 2 AMBLS11_03845 PF02503 Polyphosphate kinase middle domain AMBLS11_03855 PF00528 Binding-protein-dependent transport system inner membrane component AMBLS11_03860 PF00528 Binding-protein-dependent transport system inner membrane component AMBLS11_03865 PF00005 ABC transporter AMBLS11_03870 PF01895 PhoU domain AMBLS11_03875 PF01384 Phosphate transporter family AMBLS11_03885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_03885 PF03466 LysR substrate binding domain AMBLS11_03910 PF03006 Haemolysin-III related AMBLS11_03915 PF01047 MarR family AMBLS11_03920 PF02566 OsmC-like protein AMBLS11_03925 PF01433 Peptidase family M1 domain AMBLS11_03935 PF09186 Domain of unknown function (DUF1949) AMBLS11_03935 PF01205 Uncharacterized protein family UPF0029 AMBLS11_03940 PF04397 LytTr DNA-binding domain AMBLS11_03940 PF00072 Response regulator receiver domain AMBLS11_03955 PF08447 PAS fold AMBLS11_03955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_03955 PF13426 PAS domain AMBLS11_03965 PF12320 Type 5 capsule protein repressor C-terminal domain AMBLS11_03965 PF00149 Calcineurin-like phosphoesterase AMBLS11_03970 PF13476 AAA domain AMBLS11_03980 PF00375 Sodium:dicarboxylate symporter family AMBLS11_03985 PF00491 Arginase family AMBLS11_03990 PF01979 Amidohydrolase family AMBLS11_03995 PF00392 Bacterial regulatory proteins, gntR family AMBLS11_03995 PF07702 UTRA domain AMBLS11_04005 PF00221 Aromatic amino acid lyase AMBLS11_04015 PF01869 BadF/BadG/BcrA/BcrD ATPase family AMBLS11_04020 PF01979 Amidohydrolase family AMBLS11_04030 PF12848 ABC transporter AMBLS11_04030 PF00005 ABC transporter AMBLS11_04055 PF00924 Mechanosensitive ion channel AMBLS11_04060 PF00544 Pectate lyase AMBLS11_04070 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_04070 PF02743 Cache domain AMBLS11_04070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_04075 PF00158 Sigma-54 interaction domain AMBLS11_04075 PF00072 Response regulator receiver domain AMBLS11_04075 PF02954 Bacterial regulatory protein, Fis family AMBLS11_04080 PF02954 Bacterial regulatory protein, Fis family AMBLS11_04080 PF00158 Sigma-54 interaction domain AMBLS11_04080 PF00072 Response regulator receiver domain AMBLS11_04085 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_04085 PF00593 TonB dependent receptor AMBLS11_04095 PF00939 Sodium:sulfate symporter transmembrane region AMBLS11_04100 PF00390 Malic enzyme, N-terminal domain AMBLS11_04100 PF03949 Malic enzyme, NAD binding domain AMBLS11_04120 PF03150 Di-haem cytochrome c peroxidase AMBLS11_04155 PF00072 Response regulator receiver domain AMBLS11_04180 PF06969 HemN C-terminal domain AMBLS11_04180 PF04055 Radical SAM superfamily AMBLS11_04185 PF01725 Ham1 family AMBLS11_04190 PF00270 DEAD/DEAH box helicase AMBLS11_04190 PF00271 Helicase conserved C-terminal domain AMBLS11_04200 PF01743 Poly A polymerase head domain AMBLS11_04200 PF12627 Probable RNA and SrmB- binding site of polymerase A AMBLS11_04205 PF13401 AAA domain AMBLS11_04205 PF01471 Putative peptidoglycan binding domain AMBLS11_04215 PF13276 HTH-like domain AMBLS11_04215 PF00665 Integrase core domain AMBLS11_04215 PF13333 Integrase core domain AMBLS11_04225 PF11871 Domain of unknown function (DUF3391) AMBLS11_04225 PF01966 HD domain AMBLS11_04230 PF00694 Aconitase C-terminal domain AMBLS11_04235 PF00330 Aconitase family (aconitate hydratase) AMBLS11_04240 PF00180 Isocitrate/isopropylmalate dehydrogenase AMBLS11_04245 PF08502 LeuA allosteric (dimerisation) domain AMBLS11_04245 PF00682 HMGL-like AMBLS11_04255 PF00113 Enolase, C-terminal TIM barrel domain AMBLS11_04255 PF03952 Enolase, N-terminal domain AMBLS11_04260 PF06418 CTP synthase N-terminus AMBLS11_04260 PF00117 Glutamine amidotransferase class-I AMBLS11_04265 PF00488 MutS domain V AMBLS11_04265 PF05190 MutS family domain IV AMBLS11_04265 PF05192 MutS domain III AMBLS11_04265 PF05188 MutS domain II AMBLS11_04265 PF01624 MutS domain I AMBLS11_04270 PF02464 Competence-damaged protein AMBLS11_04275 PF00154 recA bacterial DNA recombination protein AMBLS11_04280 PF02371 Transposase IS116/IS110/IS902 family AMBLS11_04280 PF01548 Transposase AMBLS11_04285 PF00005 ABC transporter AMBLS11_04290 PF12679 ABC-2 family transporter protein AMBLS11_04295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_04295 PF00672 HAMP domain AMBLS11_04295 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_04300 PF00072 Response regulator receiver domain AMBLS11_04300 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_04340 PF00005 ABC transporter AMBLS11_04345 PF03379 CcmB protein AMBLS11_04350 PF01578 Cytochrome C assembly protein AMBLS11_04355 PF04995 Heme exporter protein D (CcmD) AMBLS11_04360 PF03100 CcmE AMBLS11_04365 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMBLS11_04365 PF01578 Cytochrome C assembly protein AMBLS11_04370 PF08534 Redoxin AMBLS11_04375 PF03918 Cytochrome C biogenesis protein AMBLS11_04385 PF04333 MlaA lipoprotein AMBLS11_04390 PF16363 GDP-mannose 4,6 dehydratase AMBLS11_04400 PF00854 POT family AMBLS11_04410 PF00005 ABC transporter AMBLS11_04420 PF10531 SLBB domain AMBLS11_04420 PF02563 Polysaccharide biosynthesis/export protein AMBLS11_04430 PF00953 Glycosyl transferase family 4 AMBLS11_04445 PF00483 Nucleotidyl transferase AMBLS11_04450 PF10531 SLBB domain AMBLS11_04455 PF00180 Isocitrate/isopropylmalate dehydrogenase AMBLS11_04455 PF18324 Hypothetical protein TT1725 AMBLS11_04470 PF11892 Domain of unknown function (DUF3412) AMBLS11_04470 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AMBLS11_04470 PF03641 Possible lysine decarboxylase AMBLS11_04475 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_04475 PF00072 Response regulator receiver domain AMBLS11_04480 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMBLS11_04480 PF14489 QueF-like protein AMBLS11_04485 PF07348 Syd protein (SUKH-2) AMBLS11_04505 PF00483 Nucleotidyl transferase AMBLS11_04510 PF00011 Hsp20/alpha crystallin family AMBLS11_04530 PF00849 RNA pseudouridylate synthase AMBLS11_04535 PF00258 Flavodoxin AMBLS11_04540 PF14602 Hexapeptide repeat of succinyl-transferase AMBLS11_04540 PF00132 Bacterial transferase hexapeptide (six repeats) AMBLS11_04540 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMBLS11_04545 PF01909 Nucleotidyltransferase domain AMBLS11_04545 PF01966 HD domain AMBLS11_04545 PF08335 GlnD PII-uridylyltransferase AMBLS11_04550 PF00557 Metallopeptidase family M24 AMBLS11_04555 PF00318 Ribosomal protein S2 AMBLS11_04560 PF00889 Elongation factor TS AMBLS11_04565 PF00696 Amino acid kinase family AMBLS11_04570 PF01765 Ribosome recycling factor AMBLS11_04575 PF01255 Putative undecaprenyl diphosphate synthase AMBLS11_04585 PF13288 DXP reductoisomerase C-terminal domain AMBLS11_04585 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMBLS11_04585 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMBLS11_04590 PF17820 PDZ domain AMBLS11_04590 PF02163 Peptidase family M50 AMBLS11_04595 PF07244 Surface antigen variable number repeat AMBLS11_04595 PF01103 Surface antigen AMBLS11_04600 PF03938 Outer membrane protein (OmpH-like) AMBLS11_04605 PF07977 FabA-like domain AMBLS11_04610 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMBLS11_04610 PF00132 Bacterial transferase hexapeptide (six repeats) AMBLS11_04615 PF02684 Lipid-A-disaccharide synthetase AMBLS11_04620 PF01351 Ribonuclease HII AMBLS11_04625 PF02811 PHP domain AMBLS11_04625 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMBLS11_04625 PF01336 OB-fold nucleic acid binding domain AMBLS11_04625 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMBLS11_04625 PF14579 Helix-hairpin-helix motif AMBLS11_04630 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMBLS11_04635 PF11734 TilS substrate C-terminal domain AMBLS11_04635 PF09179 TilS substrate binding domain AMBLS11_04635 PF01171 PP-loop family AMBLS11_04640 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_04640 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_04640 PF00563 EAL domain AMBLS11_04645 PF02254 TrkA-N domain AMBLS11_04645 PF02080 TrkA-C domain AMBLS11_04645 PF00999 Sodium/hydrogen exchanger family AMBLS11_04655 PF14437 MafB19-like deaminase AMBLS11_04665 PF01464 Transglycosylase SLT domain AMBLS11_04665 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMBLS11_04670 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AMBLS11_04670 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMBLS11_04670 PF02769 AIR synthase related protein, C-terminal domain AMBLS11_04675 PF01713 Smr domain AMBLS11_04710 PF00072 Response regulator receiver domain AMBLS11_04710 PF01584 CheW-like domain AMBLS11_04715 PF03705 CheR methyltransferase, all-alpha domain AMBLS11_04715 PF01739 CheR methyltransferase, SAM binding domain AMBLS11_04720 PF00460 Flagella basal body rod protein AMBLS11_04725 PF00460 Flagella basal body rod protein AMBLS11_04725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMBLS11_04730 PF13860 FlgD Ig-like domain AMBLS11_04730 PF03963 Flagellar hook capping protein - N-terminal region AMBLS11_04730 PF13861 FlgD Tudor-like domain AMBLS11_04735 PF07559 Flagellar basal body protein FlaE AMBLS11_04735 PF00460 Flagella basal body rod protein AMBLS11_04735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMBLS11_04740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMBLS11_04740 PF00460 Flagella basal body rod protein AMBLS11_04745 PF00460 Flagella basal body rod protein AMBLS11_04745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMBLS11_04750 PF02107 Flagellar L-ring protein AMBLS11_04755 PF02119 Flagellar P-ring protein AMBLS11_04760 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMBLS11_04760 PF10135 Rod binding protein AMBLS11_04780 PF00669 Bacterial flagellin N-terminal helical region AMBLS11_04780 PF07196 Flagellin hook IN motif AMBLS11_04780 PF00700 Bacterial flagellin C-terminal helical region AMBLS11_04785 PF00669 Bacterial flagellin N-terminal helical region AMBLS11_04785 PF07196 Flagellin hook IN motif AMBLS11_04785 PF00700 Bacterial flagellin C-terminal helical region AMBLS11_04790 PF07196 Flagellin hook IN motif AMBLS11_04790 PF00669 Bacterial flagellin N-terminal helical region AMBLS11_04790 PF00700 Bacterial flagellin C-terminal helical region AMBLS11_04795 PF03646 FlaG protein AMBLS11_04800 PF02465 Flagellar hook-associated protein 2 N-terminus AMBLS11_04800 PF07196 Flagellin hook IN motif AMBLS11_04800 PF07195 Flagellar hook-associated protein 2 C-terminus AMBLS11_04805 PF02561 Flagellar protein FliS AMBLS11_04815 PF00535 Glycosyl transferase family 2 AMBLS11_04820 PF00535 Glycosyl transferase family 2 AMBLS11_04825 PF01370 NAD dependent epimerase/dehydratase family AMBLS11_04840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMBLS11_04840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMBLS11_04845 PF02348 Cytidylyltransferase AMBLS11_04860 PF08666 SAF domain AMBLS11_04860 PF03102 NeuB family AMBLS11_04865 PF00106 short chain dehydrogenase AMBLS11_04875 PF01370 NAD dependent epimerase/dehydratase family AMBLS11_04880 PF16363 GDP-mannose 4,6 dehydratase AMBLS11_04885 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMBLS11_04890 PF02719 Polysaccharide biosynthesis protein AMBLS11_04905 PF04991 LicD family AMBLS11_04910 PF08666 SAF domain AMBLS11_04910 PF03102 NeuB family AMBLS11_04920 PF02348 Cytidylyltransferase AMBLS11_04925 PF01467 Cytidylyltransferase-like AMBLS11_04930 PF00700 Bacterial flagellin C-terminal helical region AMBLS11_04930 PF00669 Bacterial flagellin N-terminal helical region AMBLS11_04935 PF02954 Bacterial regulatory protein, Fis family AMBLS11_04935 PF00072 Response regulator receiver domain AMBLS11_04935 PF00158 Sigma-54 interaction domain AMBLS11_04940 PF00989 PAS fold AMBLS11_04940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_04940 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_04945 PF00072 Response regulator receiver domain AMBLS11_04945 PF00158 Sigma-54 interaction domain AMBLS11_04945 PF02954 Bacterial regulatory protein, Fis family AMBLS11_04950 PF02049 Flagellar hook-basal body complex protein FliE AMBLS11_04955 PF01514 Secretory protein of YscJ/FliF family AMBLS11_04955 PF08345 Flagellar M-ring protein C-terminal AMBLS11_04960 PF14842 FliG N-terminal domain AMBLS11_04960 PF14841 FliG middle domain AMBLS11_04960 PF01706 FliG C-terminal domain AMBLS11_04970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMBLS11_04970 PF18269 T3SS EscN ATPase C-terminal domain AMBLS11_04990 PF02154 Flagellar motor switch protein FliM AMBLS11_04990 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMBLS11_04995 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMBLS11_05005 PF00813 FliP family AMBLS11_05010 PF01313 Bacterial export proteins, family 3 AMBLS11_05015 PF01311 Bacterial export proteins, family 1 AMBLS11_05020 PF01312 FlhB HrpN YscU SpaS Family AMBLS11_05030 PF03734 L,D-transpeptidase catalytic domain AMBLS11_05035 PF00771 FHIPEP family AMBLS11_05040 PF00448 SRP54-type protein, GTPase domain AMBLS11_05045 PF10609 NUBPL iron-transfer P-loop NTPase AMBLS11_05050 PF04542 Sigma-70 region 2 AMBLS11_05050 PF04539 Sigma-70 region 3 AMBLS11_05050 PF04545 Sigma-70, region 4 AMBLS11_05055 PF00072 Response regulator receiver domain AMBLS11_05060 PF04344 Chemotaxis phosphatase, CheZ AMBLS11_05065 PF01627 Hpt domain AMBLS11_05065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_05065 PF02895 Signal transducing histidine kinase, homodimeric domain AMBLS11_05065 PF01584 CheW-like domain AMBLS11_05065 PF07194 P2 response regulator binding domain AMBLS11_05070 PF00072 Response regulator receiver domain AMBLS11_05070 PF01339 CheB methylesterase AMBLS11_05075 PF13614 AAA domain AMBLS11_05085 PF01584 CheW-like domain AMBLS11_05095 PF04204 Homoserine O-succinyltransferase AMBLS11_05100 PF02574 Homocysteine S-methyltransferase AMBLS11_05100 PF00809 Pterin binding enzyme AMBLS11_05100 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMBLS11_05100 PF02607 B12 binding domain AMBLS11_05100 PF02310 B12 binding domain AMBLS11_05105 PF02310 B12 binding domain AMBLS11_05105 PF02607 B12 binding domain AMBLS11_05105 PF02574 Homocysteine S-methyltransferase AMBLS11_05105 PF00809 Pterin binding enzyme AMBLS11_05105 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMBLS11_05115 PF06865 Pyrimidine/purine nucleoside phosphorylase AMBLS11_05120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_05120 PF00672 HAMP domain AMBLS11_05120 PF02743 Cache domain AMBLS11_05125 PF03466 LysR substrate binding domain AMBLS11_05125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_05130 PF03466 LysR substrate binding domain AMBLS11_05130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_05135 PF00484 Carbonic anhydrase AMBLS11_05140 PF00916 Sulfate permease family AMBLS11_05140 PF01740 STAS domain AMBLS11_05150 PF00440 Bacterial regulatory proteins, tetR family AMBLS11_05150 PF13977 BetI-type transcriptional repressor, C-terminal AMBLS11_05155 PF01431 Peptidase family M13 AMBLS11_05155 PF05649 Peptidase family M13 AMBLS11_05165 PF02631 RecX family AMBLS11_05170 PF02272 DHHA1 domain AMBLS11_05170 PF01411 tRNA synthetases class II (A) AMBLS11_05170 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMBLS11_05175 PF02599 Global regulator protein family AMBLS11_05180 PF03061 Thioesterase superfamily AMBLS11_05190 PF02436 Conserved carboxylase domain AMBLS11_05190 PF00682 HMGL-like AMBLS11_05190 PF00364 Biotin-requiring enzyme AMBLS11_05195 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AMBLS11_05200 PF00005 ABC transporter AMBLS11_05205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMBLS11_05205 PF00005 ABC transporter AMBLS11_05210 PF00528 Binding-protein-dependent transport system inner membrane component AMBLS11_05210 PF12911 N-terminal TM domain of oligopeptide transport permease C AMBLS11_05215 PF00528 Binding-protein-dependent transport system inner membrane component AMBLS11_05220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMBLS11_05225 PF02954 Bacterial regulatory protein, Fis family AMBLS11_05225 PF00158 Sigma-54 interaction domain AMBLS11_05230 PF04012 PspA/IM30 family AMBLS11_05245 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AMBLS11_05250 PF18024 Helix-turn-helix domain AMBLS11_05250 PF00158 Sigma-54 interaction domain AMBLS11_05260 PF14497 Glutathione S-transferase, C-terminal domain AMBLS11_05260 PF02798 Glutathione S-transferase, N-terminal domain AMBLS11_05265 PF01037 Lrp/AsnC ligand binding domain AMBLS11_05270 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMBLS11_05270 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMBLS11_05280 PF03301 Tryptophan 2,3-dioxygenase AMBLS11_05285 PF00593 TonB dependent receptor AMBLS11_05290 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_05290 PF00593 TonB dependent receptor AMBLS11_05325 PF01618 MotA/TolQ/ExbB proton channel family AMBLS11_05330 PF01618 MotA/TolQ/ExbB proton channel family AMBLS11_05335 PF02472 Biopolymer transport protein ExbD/TolR AMBLS11_05340 PF03544 Gram-negative bacterial TonB protein C-terminal AMBLS11_05350 PF08351 Domain of unknown function (DUF1726) AMBLS11_05350 PF13718 GNAT acetyltransferase 2 AMBLS11_05350 PF17176 tRNA-binding domain AMBLS11_05350 PF05127 Helicase AMBLS11_05375 PF01636 Phosphotransferase enzyme family AMBLS11_05385 PF00583 Acetyltransferase (GNAT) family AMBLS11_05395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_05395 PF03466 LysR substrate binding domain AMBLS11_05400 PF07690 Major Facilitator Superfamily AMBLS11_05405 PF00296 Luciferase-like monooxygenase AMBLS11_05410 PF00248 Aldo/keto reductase family AMBLS11_05425 PF13533 Biotin-lipoyl like AMBLS11_05430 PF01047 MarR family AMBLS11_05435 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_05435 PF00593 TonB dependent receptor AMBLS11_05440 PF16658 Class II release factor RF3, C-terminal domain AMBLS11_05440 PF03144 Elongation factor Tu domain 2 AMBLS11_05440 PF00009 Elongation factor Tu GTP binding domain AMBLS11_05445 PF05746 DALR anticodon binding domain AMBLS11_05445 PF00750 tRNA synthetases class I (R) AMBLS11_05445 PF03485 Arginyl tRNA synthetase N terminal domain AMBLS11_05460 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_05460 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_05460 PF00563 EAL domain AMBLS11_05470 PF00291 Pyridoxal-phosphate dependent enzyme AMBLS11_05480 PF17158 Membrane-associated sensor, integral membrane domain AMBLS11_05480 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_05505 PF00487 Fatty acid desaturase AMBLS11_05510 PF00175 Oxidoreductase NAD-binding domain AMBLS11_05510 PF00970 Oxidoreductase FAD-binding domain AMBLS11_05510 PF00042 Globin AMBLS11_05525 PF03462 PCRF domain AMBLS11_05525 PF00472 RF-1 domain AMBLS11_05530 PF01336 OB-fold nucleic acid binding domain AMBLS11_05530 PF00152 tRNA synthetases class II (D, K and N) AMBLS11_05535 PF02558 Ketopantoate reductase PanE/ApbA AMBLS11_05535 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMBLS11_05540 PF00849 RNA pseudouridylate synthase AMBLS11_05550 PF05193 Peptidase M16 inactive domain AMBLS11_05550 PF00675 Insulinase (Peptidase family M16) AMBLS11_05580 PF01713 Smr domain AMBLS11_05585 PF05175 Methyltransferase small domain AMBLS11_05590 PF01264 Chorismate synthase AMBLS11_05600 PF04293 SpoVR like protein AMBLS11_05605 PF04285 Protein of unknown function (DUF444) AMBLS11_05610 PF06798 PrkA serine protein kinase C-terminal domain AMBLS11_05610 PF08298 PrkA AAA domain AMBLS11_05620 PF00462 Glutaredoxin AMBLS11_05625 PF00593 TonB dependent receptor AMBLS11_05625 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_05645 PF04324 BFD-like [2Fe-2S] binding domain AMBLS11_05650 PF00578 AhpC/TSA family AMBLS11_05650 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMBLS11_05655 PF00929 Exonuclease AMBLS11_05660 PF18393 MotY N-terminal domain AMBLS11_05660 PF00691 OmpA family AMBLS11_05665 PF03009 Glycerophosphoryl diester phosphodiesterase family AMBLS11_05670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMBLS11_05675 PF00106 short chain dehydrogenase AMBLS11_05680 PF00313 'Cold-shock' DNA-binding domain AMBLS11_05690 PF04389 Peptidase family M28 AMBLS11_05690 PF02225 PA domain AMBLS11_05695 PF10576 Iron-sulfur binding domain of endonuclease III AMBLS11_05695 PF00633 Helix-hairpin-helix motif AMBLS11_05695 PF00730 HhH-GPD superfamily base excision DNA repair protein AMBLS11_05700 PF02508 Rnf-Nqr subunit, membrane protein AMBLS11_05705 PF04205 FMN-binding domain AMBLS11_05710 PF03116 NQR2, RnfD, RnfE family AMBLS11_05715 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMBLS11_05715 PF12838 4Fe-4S dicluster domain AMBLS11_05715 PF13375 RnfC Barrel sandwich hybrid domain AMBLS11_05715 PF10531 SLBB domain AMBLS11_05720 PF04060 Putative Fe-S cluster AMBLS11_05730 PF01554 MatE AMBLS11_05735 PF04851 Type III restriction enzyme, res subunit AMBLS11_05735 PF02151 UvrB/uvrC motif AMBLS11_05735 PF12344 Ultra-violet resistance protein B AMBLS11_05735 PF17757 UvrB interaction domain AMBLS11_05735 PF00271 Helicase conserved C-terminal domain AMBLS11_05745 PF06508 Queuosine biosynthesis protein QueC AMBLS11_05750 PF04055 Radical SAM superfamily AMBLS11_05760 PF13537 Glutamine amidotransferase domain AMBLS11_05760 PF00733 Asparagine synthase AMBLS11_05780 PF02080 TrkA-C domain AMBLS11_05780 PF03600 Citrate transporter AMBLS11_05785 PF00009 Elongation factor Tu GTP binding domain AMBLS11_05790 PF00459 Inositol monophosphatase family AMBLS11_05800 PF01507 Phosphoadenosine phosphosulfate reductase family AMBLS11_05805 PF00474 Sodium:solute symporter family AMBLS11_05810 PF00072 Response regulator receiver domain AMBLS11_05810 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_05820 PF04545 Sigma-70, region 4 AMBLS11_05820 PF04542 Sigma-70 region 2 AMBLS11_05835 PF07584 Aerotolerance regulator N-terminal AMBLS11_05835 PF13519 von Willebrand factor type A domain AMBLS11_05840 PF00092 von Willebrand factor type A domain AMBLS11_05850 PF01882 Protein of unknown function DUF58 AMBLS11_05855 PF07726 ATPase family associated with various cellular activities (AAA) AMBLS11_05855 PF17863 AAA lid domain AMBLS11_05860 PF00108 Thiolase, N-terminal domain AMBLS11_05860 PF02803 Thiolase, C-terminal domain AMBLS11_05865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMBLS11_05865 PF00378 Enoyl-CoA hydratase/isomerase AMBLS11_05865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMBLS11_05875 PF00563 EAL domain AMBLS11_05875 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_05875 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_05880 PF00675 Insulinase (Peptidase family M16) AMBLS11_05880 PF05193 Peptidase M16 inactive domain AMBLS11_05885 PF00300 Histidine phosphatase superfamily (branch 1) AMBLS11_05895 PF00571 CBS domain AMBLS11_05895 PF01595 Cyclin M transmembrane N-terminal domain AMBLS11_05895 PF03471 Transporter associated domain AMBLS11_05900 PF01578 Cytochrome C assembly protein AMBLS11_05905 PF02881 SRP54-type protein, helical bundle domain AMBLS11_05905 PF00448 SRP54-type protein, GTPase domain AMBLS11_05905 PF02978 Signal peptide binding domain AMBLS11_05940 PF00873 AcrB/AcrD/AcrF family AMBLS11_05945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMBLS11_05950 PF00005 ABC transporter AMBLS11_05950 PF00664 ABC transporter transmembrane region AMBLS11_05960 PF00886 Ribosomal protein S16 AMBLS11_05965 PF01782 RimM N-terminal domain AMBLS11_05965 PF05239 PRC-barrel domain AMBLS11_05970 PF01746 tRNA (Guanine-1)-methyltransferase AMBLS11_05975 PF01245 Ribosomal protein L19 AMBLS11_05990 PF03458 UPF0126 domain AMBLS11_05995 PF00378 Enoyl-CoA hydratase/isomerase AMBLS11_06000 PF00793 DAHP synthetase I family AMBLS11_06005 PF01817 Chorismate mutase type II AMBLS11_06005 PF02153 Prephenate dehydrogenase AMBLS11_06040 PF01817 Chorismate mutase type II AMBLS11_06040 PF00800 Prephenate dehydratase AMBLS11_06045 PF00072 Response regulator receiver domain AMBLS11_06050 PF01253 Translation initiation factor SUI1 AMBLS11_06060 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_06060 PF00072 Response regulator receiver domain AMBLS11_06070 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_06070 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_06070 PF00563 EAL domain AMBLS11_06080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_06080 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_06090 PF00158 Sigma-54 interaction domain AMBLS11_06090 PF00072 Response regulator receiver domain AMBLS11_06105 PF01336 OB-fold nucleic acid binding domain AMBLS11_06105 PF02938 GAD domain AMBLS11_06105 PF00152 tRNA synthetases class II (D, K and N) AMBLS11_06110 PF00293 NUDIX domain AMBLS11_06115 PF02075 Crossover junction endodeoxyribonuclease RuvC AMBLS11_06125 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMBLS11_06125 PF05491 RuvB C-terminal winged helix domain AMBLS11_06125 PF17864 RuvB AAA lid domain AMBLS11_06130 PF03061 Thioesterase superfamily AMBLS11_06135 PF01618 MotA/TolQ/ExbB proton channel family AMBLS11_06140 PF02472 Biopolymer transport protein ExbD/TolR AMBLS11_06150 PF04052 TolB amino-terminal domain AMBLS11_06150 PF07676 WD40-like Beta Propeller Repeat AMBLS11_06155 PF00691 OmpA family AMBLS11_06160 PF13174 Tetratricopeptide repeat AMBLS11_06160 PF16331 TolA binding protein trimerisation AMBLS11_06170 PF02445 Quinolinate synthetase A protein AMBLS11_06180 PF01734 Patatin-like phospholipase AMBLS11_06185 PF02558 Ketopantoate reductase PanE/ApbA AMBLS11_06185 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMBLS11_06200 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMBLS11_06200 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMBLS11_06205 PF01292 Prokaryotic cytochrome b561 AMBLS11_06210 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_06210 PF00563 EAL domain AMBLS11_06210 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_06225 PF01863 Protein of unknown function DUF45 AMBLS11_06230 PF00571 CBS domain AMBLS11_06235 PF00873 AcrB/AcrD/AcrF family AMBLS11_06245 PF08361 MAATS-type transcriptional repressor, C-terminal region AMBLS11_06245 PF00440 Bacterial regulatory proteins, tetR family AMBLS11_06250 PF00593 TonB dependent receptor AMBLS11_06250 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_06260 PF00873 AcrB/AcrD/AcrF family AMBLS11_06270 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_06280 PF02470 MlaD protein AMBLS11_06285 PF04403 Paraquat-inducible protein A AMBLS11_06295 PF00152 tRNA synthetases class II (D, K and N) AMBLS11_06295 PF01336 OB-fold nucleic acid binding domain AMBLS11_06305 PF01699 Sodium/calcium exchanger protein AMBLS11_06310 PF18030 RimK PreATP-grasp domain AMBLS11_06310 PF08443 RimK-like ATP-grasp domain AMBLS11_06330 PF00202 Aminotransferase class-III AMBLS11_06335 PF04055 Radical SAM superfamily AMBLS11_06335 PF06968 Biotin and Thiamin Synthesis associated domain AMBLS11_06340 PF00155 Aminotransferase class I and II AMBLS11_06345 PF08241 Methyltransferase domain AMBLS11_06355 PF03575 Peptidase family S51 AMBLS11_06360 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMBLS11_06365 PF01032 FecCD transport family AMBLS11_06370 PF00005 ABC transporter AMBLS11_06375 PF01474 Class-II DAHP synthetase family AMBLS11_06380 PF02702 Osmosensitive K+ channel His kinase sensor domain AMBLS11_06380 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_06380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_06380 PF13493 Domain of unknown function (DUF4118) AMBLS11_06385 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_06385 PF00072 Response regulator receiver domain AMBLS11_06390 PF02254 TrkA-N domain AMBLS11_06390 PF02080 TrkA-C domain AMBLS11_06395 PF02386 Cation transport protein AMBLS11_06410 PF00664 ABC transporter transmembrane region AMBLS11_06410 PF00005 ABC transporter AMBLS11_06415 PF04055 Radical SAM superfamily AMBLS11_06415 PF06463 Molybdenum Cofactor Synthesis C AMBLS11_06425 PF00072 Response regulator receiver domain AMBLS11_06425 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_06430 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMBLS11_06450 PF01207 Dihydrouridine synthase (Dus) AMBLS11_06460 PF13472 GDSL-like Lipase/Acylhydrolase family AMBLS11_06465 PF00005 ABC transporter AMBLS11_06475 PF01370 NAD dependent epimerase/dehydratase family AMBLS11_06475 PF08338 Domain of unknown function (DUF1731) AMBLS11_06480 PF02152 Dihydroneopterin aldolase AMBLS11_06485 PF01594 AI-2E family transporter AMBLS11_06490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_06490 PF08918 PhoQ Sensor AMBLS11_06495 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_06495 PF00072 Response regulator receiver domain AMBLS11_06510 PF03795 YCII-related domain AMBLS11_06515 PF00290 Tryptophan synthase alpha chain AMBLS11_06520 PF00291 Pyridoxal-phosphate dependent enzyme AMBLS11_06525 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMBLS11_06525 PF00218 Indole-3-glycerol phosphate synthase AMBLS11_06530 PF02885 Glycosyl transferase family, helical bundle domain AMBLS11_06530 PF00591 Glycosyl transferase family, a/b domain AMBLS11_06535 PF00117 Glutamine amidotransferase class-I AMBLS11_06540 PF04715 Anthranilate synthase component I, N terminal region AMBLS11_06540 PF00425 chorismate binding enzyme AMBLS11_06545 PF02811 PHP domain AMBLS11_06550 PF01300 Telomere recombination AMBLS11_06555 PF02616 Segregation and condensation protein ScpA AMBLS11_06560 PF04079 Segregation and condensation complex subunit ScpB AMBLS11_06565 PF00849 RNA pseudouridylate synthase AMBLS11_06565 PF01479 S4 domain AMBLS11_06570 PF00248 Aldo/keto reductase family AMBLS11_06575 PF12464 Maltose acetyltransferase AMBLS11_06575 PF14602 Hexapeptide repeat of succinyl-transferase AMBLS11_06585 PF04286 Protein of unknown function (DUF445) AMBLS11_06590 PF05724 Thiopurine S-methyltransferase (TPMT) AMBLS11_06595 PF04355 SmpA / OmlA family AMBLS11_06600 PF02463 RecF/RecN/SMC N terminal domain AMBLS11_06605 PF00210 Ferritin-like domain AMBLS11_06620 PF00465 Iron-containing alcohol dehydrogenase AMBLS11_06635 PF00561 alpha/beta hydrolase fold AMBLS11_06645 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_06645 PF00593 TonB dependent receptor AMBLS11_06650 PF00196 Bacterial regulatory proteins, luxR family AMBLS11_06650 PF00072 Response regulator receiver domain AMBLS11_06660 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_06660 PF00672 HAMP domain AMBLS11_06660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_06660 PF01627 Hpt domain AMBLS11_06660 PF00072 Response regulator receiver domain AMBLS11_06665 PF01025 GrpE AMBLS11_06670 PF00012 Hsp70 protein AMBLS11_06675 PF00684 DnaJ central domain AMBLS11_06675 PF01556 DnaJ C terminal domain AMBLS11_06675 PF00226 DnaJ domain AMBLS11_06680 PF01322 Cytochrome C' AMBLS11_06685 PF00563 EAL domain AMBLS11_06685 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_06685 PF13426 PAS domain AMBLS11_06690 PF16177 Acetyl-coenzyme A synthetase N-terminus AMBLS11_06690 PF13193 AMP-binding enzyme C-terminal domain AMBLS11_06690 PF00501 AMP-binding enzyme AMBLS11_06700 PF01113 Dihydrodipicolinate reductase, N-terminus AMBLS11_06700 PF05173 Dihydrodipicolinate reductase, C-terminus AMBLS11_06705 PF00117 Glutamine amidotransferase class-I AMBLS11_06705 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMBLS11_06710 PF02142 MGS-like domain AMBLS11_06710 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMBLS11_06710 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMBLS11_06715 PF03449 Transcription elongation factor, N-terminal AMBLS11_06715 PF01272 Transcription elongation factor, GreA/GreB, C-term AMBLS11_06735 PF00011 Hsp20/alpha crystallin family AMBLS11_06740 PF00871 Acetokinase family AMBLS11_06745 PF01515 Phosphate acetyl/butaryl transferase AMBLS11_06745 PF07085 DRTGG domain AMBLS11_06750 PF01979 Amidohydrolase family AMBLS11_06755 PF00795 Carbon-nitrogen hydrolase AMBLS11_06760 PF00571 CBS domain AMBLS11_06760 PF03471 Transporter associated domain AMBLS11_06765 PF02130 Uncharacterized protein family UPF0054 AMBLS11_06770 PF02562 PhoH-like protein AMBLS11_06775 PF04055 Radical SAM superfamily AMBLS11_06775 PF01938 TRAM domain AMBLS11_06775 PF00919 Uncharacterized protein family UPF0004 AMBLS11_06785 PF01494 FAD binding domain AMBLS11_06815 PF00593 TonB dependent receptor AMBLS11_06815 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_06820 PF03061 Thioesterase superfamily AMBLS11_06825 PF01613 Flavin reductase like domain AMBLS11_06835 PF01235 Sodium:alanine symporter family AMBLS11_06845 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMBLS11_06850 PF06071 Protein of unknown function (DUF933) AMBLS11_06850 PF01926 50S ribosome-binding GTPase AMBLS11_06855 PF01195 Peptidyl-tRNA hydrolase AMBLS11_06860 PF14693 Ribosomal protein TL5, C-terminal domain AMBLS11_06860 PF01386 Ribosomal L25p family AMBLS11_06865 PF08240 Alcohol dehydrogenase GroES-like domain AMBLS11_06865 PF00107 Zinc-binding dehydrogenase AMBLS11_06880 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMBLS11_06880 PF14572 Phosphoribosyl synthetase-associated domain AMBLS11_06885 PF00288 GHMP kinases N terminal domain AMBLS11_06885 PF08544 GHMP kinases C terminal AMBLS11_06890 PF03550 Outer membrane lipoprotein LolB AMBLS11_06895 PF01488 Shikimate / quinate 5-dehydrogenase AMBLS11_06895 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMBLS11_06895 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMBLS11_06900 PF00472 RF-1 domain AMBLS11_06900 PF03462 PCRF domain AMBLS11_06905 PF13847 Methyltransferase domain AMBLS11_06905 PF17827 PrmC N-terminal domain AMBLS11_06910 PF11849 Domain of unknown function (DUF3369) AMBLS11_06915 PF04247 Invasion gene expression up-regulator, SirB AMBLS11_06930 PF03466 LysR substrate binding domain AMBLS11_06930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_06940 PF04241 Protein of unknown function (DUF423) AMBLS11_06945 PF01728 FtsJ-like methyltransferase AMBLS11_06945 PF18125 RlmM ferredoxin-like domain AMBLS11_06950 PF03764 Elongation factor G, domain IV AMBLS11_06950 PF14492 Elongation Factor G, domain II AMBLS11_06950 PF00009 Elongation factor Tu GTP binding domain AMBLS11_06950 PF00679 Elongation factor G C-terminus AMBLS11_06950 PF03144 Elongation factor Tu domain 2 AMBLS11_06955 PF02560 Cyanate lyase C-terminal domain AMBLS11_06960 PF00069 Protein kinase domain AMBLS11_06965 PF01226 Formate/nitrite transporter AMBLS11_06970 PF11992 Domain of unknown function (DUF3488) AMBLS11_06970 PF13559 Domain of unknown function (DUF4129) AMBLS11_06970 PF01841 Transglutaminase-like superfamily AMBLS11_06980 PF07726 ATPase family associated with various cellular activities (AAA) AMBLS11_06980 PF17863 AAA lid domain AMBLS11_06990 PF03925 SeqA protein C-terminal domain AMBLS11_06990 PF17206 SeqA protein N-terminal domain AMBLS11_06995 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMBLS11_06995 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMBLS11_06995 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMBLS11_06995 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMBLS11_07000 PF00343 Carbohydrate phosphorylase AMBLS11_07005 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_07005 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_07005 PF00563 EAL domain AMBLS11_07010 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMBLS11_07020 PF01906 Putative heavy-metal-binding AMBLS11_07025 PF00326 Prolyl oligopeptidase family AMBLS11_07030 PF00375 Sodium:dicarboxylate symporter family AMBLS11_07045 PF07687 Peptidase dimerisation domain AMBLS11_07045 PF01546 Peptidase family M20/M25/M40 AMBLS11_07050 PF03960 ArsC family AMBLS11_07055 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMBLS11_07070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMBLS11_07075 PF04209 homogentisate 1,2-dioxygenase AMBLS11_07090 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_07090 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_07090 PF00563 EAL domain AMBLS11_07095 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_07095 PF00563 EAL domain AMBLS11_07095 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_07100 PF00873 AcrB/AcrD/AcrF family AMBLS11_07110 PF02254 TrkA-N domain AMBLS11_07110 PF00999 Sodium/hydrogen exchanger family AMBLS11_07115 PF02525 Flavodoxin-like fold AMBLS11_07125 PF01638 HxlR-like helix-turn-helix AMBLS11_07135 PF08448 PAS fold AMBLS11_07135 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_07135 PF08447 PAS fold AMBLS11_07135 PF05231 MASE1 AMBLS11_07135 PF13426 PAS domain AMBLS11_07135 PF00563 EAL domain AMBLS11_07145 PF01979 Amidohydrolase family AMBLS11_07150 PF00576 HIUase/Transthyretin family AMBLS11_07165 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMBLS11_07165 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMBLS11_07170 PF01799 [2Fe-2S] binding domain AMBLS11_07170 PF00111 2Fe-2S iron-sulfur cluster binding domain AMBLS11_07170 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMBLS11_07170 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMBLS11_07175 PF08362 YcdC-like protein, C-terminal region AMBLS11_07175 PF00440 Bacterial regulatory proteins, tetR family AMBLS11_07190 PF00860 Permease family AMBLS11_07195 PF00962 Adenosine/AMP deaminase AMBLS11_07205 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_07205 PF00563 EAL domain AMBLS11_07205 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_07210 PF00072 Response regulator receiver domain AMBLS11_07210 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_07215 PF09308 LuxQ, periplasmic AMBLS11_07215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_07215 PF00072 Response regulator receiver domain AMBLS11_07215 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_07225 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_07225 PF00593 TonB dependent receptor AMBLS11_07230 PF00860 Permease family AMBLS11_07235 PF00962 Adenosine/AMP deaminase AMBLS11_07245 PF01546 Peptidase family M20/M25/M40 AMBLS11_07245 PF07687 Peptidase dimerisation domain AMBLS11_07250 PF00266 Aminotransferase class-V AMBLS11_07255 PF01925 Sulfite exporter TauE/SafE AMBLS11_07265 PF01425 Amidase AMBLS11_07310 PF02824 TGS domain AMBLS11_07310 PF03129 Anticodon binding domain AMBLS11_07310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMBLS11_07310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMBLS11_07315 PF00707 Translation initiation factor IF-3, C-terminal domain AMBLS11_07315 PF05198 Translation initiation factor IF-3, N-terminal domain AMBLS11_07320 PF01632 Ribosomal protein L35 AMBLS11_07325 PF00453 Ribosomal protein L20 AMBLS11_07330 PF01050 Mannose-6-phosphate isomerase AMBLS11_07330 PF00483 Nucleotidyl transferase AMBLS11_07335 PF02397 Bacterial sugar transferase AMBLS11_07345 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AMBLS11_07345 PF10531 SLBB domain AMBLS11_07345 PF02563 Polysaccharide biosynthesis/export protein AMBLS11_07350 PF13614 AAA domain AMBLS11_07380 PF00563 EAL domain AMBLS11_07380 PF08448 PAS fold AMBLS11_07380 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_07390 PF00534 Glycosyl transferases group 1 AMBLS11_07390 PF13439 Glycosyltransferase Family 4 AMBLS11_07400 PF00534 Glycosyl transferases group 1 AMBLS11_07400 PF13477 Glycosyl transferase 4-like AMBLS11_07420 PF00535 Glycosyl transferase family 2 AMBLS11_07445 PF00535 Glycosyl transferase family 2 AMBLS11_07455 PF00534 Glycosyl transferases group 1 AMBLS11_07455 PF13579 Glycosyl transferase 4-like domain AMBLS11_07470 PF00535 Glycosyl transferase family 2 AMBLS11_07475 PF01757 Acyltransferase family AMBLS11_07480 PF01757 Acyltransferase family AMBLS11_07490 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMBLS11_07490 PF01409 tRNA synthetases class II core domain (F) AMBLS11_07495 PF03483 B3/4 domain AMBLS11_07495 PF03484 tRNA synthetase B5 domain AMBLS11_07495 PF01588 Putative tRNA binding domain AMBLS11_07495 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMBLS11_07495 PF03147 Ferredoxin-fold anticodon binding domain AMBLS11_07500 PF00216 Bacterial DNA-binding protein AMBLS11_07510 PF04073 Aminoacyl-tRNA editing domain AMBLS11_07515 PF01804 Penicillin amidase AMBLS11_07520 PF00933 Glycosyl hydrolase family 3 N terminal domain AMBLS11_07525 PF01923 Cobalamin adenosyltransferase AMBLS11_07535 PF00271 Helicase conserved C-terminal domain AMBLS11_07535 PF00270 DEAD/DEAH box helicase AMBLS11_07535 PF17757 UvrB interaction domain AMBLS11_07535 PF02559 CarD-like/TRCF domain AMBLS11_07535 PF03461 TRCF domain AMBLS11_07545 PF02687 FtsX-like permease family AMBLS11_07545 PF12704 MacB-like periplasmic core domain AMBLS11_07555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_07555 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_07570 PF03372 Endonuclease/Exonuclease/phosphatase family AMBLS11_07605 PF07690 Major Facilitator Superfamily AMBLS11_07615 PF00483 Nucleotidyl transferase AMBLS11_07630 PF00682 HMGL-like AMBLS11_07635 PF00289 Biotin carboxylase, N-terminal domain AMBLS11_07635 PF00364 Biotin-requiring enzyme AMBLS11_07635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMBLS11_07635 PF02785 Biotin carboxylase C-terminal domain AMBLS11_07640 PF00378 Enoyl-CoA hydratase/isomerase AMBLS11_07645 PF01039 Carboxyl transferase domain AMBLS11_07650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMBLS11_07650 PF02770 Acyl-CoA dehydrogenase, middle domain AMBLS11_07650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMBLS11_07655 PF13411 MerR HTH family regulatory protein AMBLS11_07660 PF00108 Thiolase, N-terminal domain AMBLS11_07660 PF02803 Thiolase, C-terminal domain AMBLS11_07670 PF00266 Aminotransferase class-V AMBLS11_07685 PF08411 Exonuclease C-terminal AMBLS11_07685 PF00929 Exonuclease AMBLS11_07690 PF01627 Hpt domain AMBLS11_07690 PF00672 HAMP domain AMBLS11_07690 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMBLS11_07690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_07690 PF00072 Response regulator receiver domain AMBLS11_07690 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_07695 PF01112 Asparaginase AMBLS11_07705 PF02333 Phytase AMBLS11_07720 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AMBLS11_07720 PF12833 Helix-turn-helix domain AMBLS11_07730 PF00271 Helicase conserved C-terminal domain AMBLS11_07730 PF04408 Helicase associated domain (HA2) AMBLS11_07730 PF11898 Domain of unknown function (DUF3418) AMBLS11_07730 PF00270 DEAD/DEAH box helicase AMBLS11_07730 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMBLS11_07745 PF10672 S-adenosylmethionine-dependent methyltransferase AMBLS11_07745 PF17785 PUA-like domain AMBLS11_07750 PF02801 Beta-ketoacyl synthase, C-terminal domain AMBLS11_07750 PF00550 Phosphopantetheine attachment site AMBLS11_07750 PF08240 Alcohol dehydrogenase GroES-like domain AMBLS11_07750 PF08659 KR domain AMBLS11_07750 PF16197 Ketoacyl-synthetase C-terminal extension AMBLS11_07750 PF00109 Beta-ketoacyl synthase, N-terminal domain AMBLS11_07750 PF00698 Acyl transferase domain AMBLS11_07750 PF14765 Polyketide synthase dehydratase AMBLS11_07755 PF00075 RNase H AMBLS11_07760 PF00929 Exonuclease AMBLS11_07770 PF00563 EAL domain AMBLS11_07770 PF12792 CSS motif domain associated with EAL AMBLS11_07775 PF00005 ABC transporter AMBLS11_07780 PF12704 MacB-like periplasmic core domain AMBLS11_07780 PF02687 FtsX-like permease family AMBLS11_07785 PF00375 Sodium:dicarboxylate symporter family AMBLS11_07795 PF04996 Succinylarginine dihydrolase AMBLS11_07800 PF08272 Topoisomerase I zinc-ribbon-like AMBLS11_07800 PF01131 DNA topoisomerase AMBLS11_07800 PF01751 Toprim domain AMBLS11_07800 PF01396 Topoisomerase DNA binding C4 zinc finger AMBLS11_07805 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AMBLS11_07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_07820 PF03466 LysR substrate binding domain AMBLS11_07825 PF12804 MobA-like NTP transferase domain AMBLS11_07830 PF02634 FdhD/NarQ family AMBLS11_07835 PF00384 Molybdopterin oxidoreductase AMBLS11_07840 PF13673 Acetyltransferase (GNAT) domain AMBLS11_07850 PF00575 S1 RNA binding domain AMBLS11_07850 PF12111 Polyribonucleotide phosphorylase C terminal AMBLS11_07850 PF10150 Ribonuclease E/G family AMBLS11_07855 PF00849 RNA pseudouridylate synthase AMBLS11_07855 PF01479 S4 domain AMBLS11_07860 PF13419 Haloacid dehalogenase-like hydrolase AMBLS11_07865 PF02545 Maf-like protein AMBLS11_07870 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMBLS11_07875 PF01783 Ribosomal L32p protein family AMBLS11_07880 PF02504 Fatty acid synthesis protein AMBLS11_07885 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMBLS11_07885 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMBLS11_07890 PF00698 Acyl transferase domain AMBLS11_07900 PF00550 Phosphopantetheine attachment site AMBLS11_07905 PF02801 Beta-ketoacyl synthase, C-terminal domain AMBLS11_07905 PF00109 Beta-ketoacyl synthase, N-terminal domain AMBLS11_07910 PF01063 Amino-transferase class IV AMBLS11_07915 PF02618 YceG-like family AMBLS11_07920 PF02223 Thymidylate kinase AMBLS11_07925 PF09115 DNA polymerase III, delta subunit, C terminal AMBLS11_07930 PF01026 TatD related DNase AMBLS11_07935 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMBLS11_07935 PF01243 Pyridoxamine 5'-phosphate oxidase AMBLS11_07940 PF13460 NAD(P)H-binding AMBLS11_07945 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_07945 PF08448 PAS fold AMBLS11_07955 PF00665 Integrase core domain AMBLS11_07955 PF13333 Integrase core domain AMBLS11_07955 PF13276 HTH-like domain AMBLS11_07975 PF00561 alpha/beta hydrolase fold AMBLS11_07980 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMBLS11_07980 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMBLS11_07980 PF00378 Enoyl-CoA hydratase/isomerase AMBLS11_07985 PF00108 Thiolase, N-terminal domain AMBLS11_07985 PF02803 Thiolase, C-terminal domain AMBLS11_07990 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMBLS11_07990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMBLS11_07990 PF02770 Acyl-CoA dehydrogenase, middle domain AMBLS11_07990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMBLS11_08005 PF04198 Putative sugar-binding domain AMBLS11_08010 PF13419 Haloacid dehalogenase-like hydrolase AMBLS11_08020 PF08125 Mannitol dehydrogenase C-terminal domain AMBLS11_08020 PF01232 Mannitol dehydrogenase Rossmann domain AMBLS11_08030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_08030 PF03466 LysR substrate binding domain AMBLS11_08035 PF01575 MaoC like domain AMBLS11_08045 PF00924 Mechanosensitive ion channel AMBLS11_08050 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_08050 PF00593 TonB dependent receptor AMBLS11_08055 PF01329 Pterin 4 alpha carbinolamine dehydratase AMBLS11_08060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_08060 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_08060 PF01627 Hpt domain AMBLS11_08060 PF00072 Response regulator receiver domain AMBLS11_08065 PF00072 Response regulator receiver domain AMBLS11_08070 PF02576 RimP N-terminal domain AMBLS11_08070 PF17384 RimP C-terminal SH3 domain AMBLS11_08075 PF13184 NusA-like KH domain AMBLS11_08075 PF00575 S1 RNA binding domain AMBLS11_08075 PF08529 NusA N-terminal domain AMBLS11_08080 PF08364 Bacterial translation initiation factor IF-2 associated region AMBLS11_08080 PF11987 Translation-initiation factor 2 AMBLS11_08080 PF04760 Translation initiation factor IF-2, N-terminal region AMBLS11_08080 PF00009 Elongation factor Tu GTP binding domain AMBLS11_08085 PF02033 Ribosome-binding factor A AMBLS11_08090 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMBLS11_08090 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMBLS11_08090 PF09157 Pseudouridine synthase II TruB, C-terminal AMBLS11_08095 PF00312 Ribosomal protein S15 AMBLS11_08100 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_08100 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_08100 PF00563 EAL domain AMBLS11_08105 PF01479 S4 domain AMBLS11_08105 PF00849 RNA pseudouridylate synthase AMBLS11_08115 PF00583 Acetyltransferase (GNAT) family AMBLS11_08115 PF00795 Carbon-nitrogen hydrolase AMBLS11_08140 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMBLS11_08140 PF00578 AhpC/TSA family AMBLS11_08145 PF13192 Thioredoxin domain AMBLS11_08145 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMBLS11_08150 PF00593 TonB dependent receptor AMBLS11_08150 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_08180 PF11842 Domain of unknown function (DUF3362) AMBLS11_08180 PF08497 Radical SAM N-terminal AMBLS11_08180 PF04055 Radical SAM superfamily AMBLS11_08195 PF00360 Phytochrome region AMBLS11_08195 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_08195 PF01590 GAF domain AMBLS11_08195 PF00563 EAL domain AMBLS11_08220 PF00106 short chain dehydrogenase AMBLS11_08225 PF01370 NAD dependent epimerase/dehydratase family AMBLS11_08230 PF01758 Sodium Bile acid symporter family AMBLS11_08245 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMBLS11_08250 PF01668 SmpB protein AMBLS11_08255 PF03364 Polyketide cyclase / dehydrase and lipid transport AMBLS11_08260 PF03658 RnfH family Ubiquitin AMBLS11_08270 PF02028 BCCT, betaine/carnitine/choline family transporter AMBLS11_08275 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_08275 PF00593 TonB dependent receptor AMBLS11_08280 PF13181 Tetratricopeptide repeat AMBLS11_08295 PF03618 Kinase/pyrophosphorylase AMBLS11_08300 PF00391 PEP-utilising enzyme, mobile domain AMBLS11_08300 PF02896 PEP-utilising enzyme, TIM barrel domain AMBLS11_08300 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMBLS11_08305 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMBLS11_08310 PF01799 [2Fe-2S] binding domain AMBLS11_08310 PF00111 2Fe-2S iron-sulfur cluster binding domain AMBLS11_08330 PF08007 Cupin superfamily protein AMBLS11_08335 PF00211 Adenylate and Guanylate cyclase catalytic domain AMBLS11_08340 PF00206 Lyase AMBLS11_08340 PF08328 Adenylosuccinate lyase C-terminal AMBLS11_08345 PF04356 Protein of unknown function (DUF489) AMBLS11_08355 PF00849 RNA pseudouridylate synthase AMBLS11_08360 PF03971 Monomeric isocitrate dehydrogenase AMBLS11_08365 PF00313 'Cold-shock' DNA-binding domain AMBLS11_08370 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMBLS11_08375 PF00004 ATPase family associated with various cellular activities (AAA) AMBLS11_08375 PF07724 AAA domain (Cdc48 subfamily) AMBLS11_08375 PF10431 C-terminal, D2-small domain, of ClpB protein AMBLS11_08375 PF02861 Clp amino terminal domain, pathogenicity island component AMBLS11_08375 PF17871 AAA lid domain AMBLS11_08380 PF01176 Translation initiation factor 1A / IF-1 AMBLS11_08385 PF04377 Arginine-tRNA-protein transferase, C terminus AMBLS11_08385 PF04376 Arginine-tRNA-protein transferase, N terminus AMBLS11_08390 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMBLS11_08395 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMBLS11_08400 PF04217 Protein of unknown function, DUF412 AMBLS11_08405 PF01343 Peptidase family S49 AMBLS11_08420 PF00881 Nitroreductase family AMBLS11_08430 PF17763 Glutaminase/Asparaginase C-terminal domain AMBLS11_08430 PF00710 Asparaginase, N-terminal AMBLS11_08435 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMBLS11_08435 PF04055 Radical SAM superfamily AMBLS11_08440 PF03099 Biotin/lipoate A/B protein ligase family AMBLS11_08445 PF04359 Protein of unknown function (DUF493) AMBLS11_08450 PF00768 D-alanyl-D-alanine carboxypeptidase AMBLS11_08450 PF07943 Penicillin-binding protein 5, C-terminal domain AMBLS11_08455 PF05036 Sporulation related domain AMBLS11_08455 PF03330 Lytic transglycolase AMBLS11_08460 PF01098 Cell cycle protein AMBLS11_08465 PF03717 Penicillin-binding Protein dimerisation domain AMBLS11_08465 PF00905 Penicillin binding protein transpeptidase domain AMBLS11_08470 PF02590 Predicted SPOUT methyltransferase AMBLS11_08480 PF01467 Cytidylyltransferase-like AMBLS11_08485 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AMBLS11_08485 PF06144 DNA polymerase III, delta subunit AMBLS11_08490 PF04390 Lipopolysaccharide-assembly AMBLS11_08495 PF00133 tRNA synthetases class I (I, L, M and V) AMBLS11_08495 PF08264 Anticodon-binding domain of tRNA AMBLS11_08495 PF13603 Leucyl-tRNA synthetase, Domain 2 AMBLS11_08505 PF05362 Lon protease (S16) C-terminal proteolytic domain AMBLS11_08505 PF13654 AAA domain AMBLS11_08520 PF00106 short chain dehydrogenase AMBLS11_08525 PF01985 CRS1 / YhbY (CRM) domain AMBLS11_08530 PF01728 FtsJ-like methyltransferase AMBLS11_08535 PF17862 AAA+ lid domain AMBLS11_08535 PF06480 FtsH Extracellular AMBLS11_08535 PF01434 Peptidase family M41 AMBLS11_08535 PF00004 ATPase family associated with various cellular activities (AAA) AMBLS11_08540 PF00809 Pterin binding enzyme AMBLS11_08545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMBLS11_08545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMBLS11_08545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMBLS11_08545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMBLS11_08550 PF00121 Triosephosphate isomerase AMBLS11_08555 PF03840 Preprotein translocase SecG subunit AMBLS11_08560 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_08560 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_08560 PF00563 EAL domain AMBLS11_08560 PF13188 PAS domain AMBLS11_08565 PF01679 Proteolipid membrane potential modulator AMBLS11_08575 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMBLS11_08575 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMBLS11_08580 PF02142 MGS-like domain AMBLS11_08580 PF00781 Diacylglycerol kinase catalytic domain AMBLS11_08610 PF00474 Sodium:solute symporter family AMBLS11_08635 PF00575 S1 RNA binding domain AMBLS11_08635 PF00013 KH domain AMBLS11_08635 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMBLS11_08635 PF01138 3' exoribonuclease family, domain 1 AMBLS11_08635 PF03725 3' exoribonuclease family, domain 2 AMBLS11_08740 PF07690 Major Facilitator Superfamily AMBLS11_08750 PF03544 Gram-negative bacterial TonB protein C-terminal AMBLS11_08770 PF07719 Tetratricopeptide repeat AMBLS11_08770 PF13181 Tetratricopeptide repeat AMBLS11_08785 PF06470 SMC proteins Flexible Hinge Domain AMBLS11_08785 PF02463 RecF/RecN/SMC N terminal domain AMBLS11_08790 PF04354 ZipA, C-terminal FtsZ-binding domain AMBLS11_08795 PF01653 NAD-dependent DNA ligase adenylation domain AMBLS11_08795 PF00533 BRCA1 C Terminus (BRCT) domain AMBLS11_08795 PF03120 NAD-dependent DNA ligase OB-fold domain AMBLS11_08795 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMBLS11_08795 PF12826 Helix-hairpin-helix motif AMBLS11_08810 PF00664 ABC transporter transmembrane region AMBLS11_08810 PF00005 ABC transporter AMBLS11_08815 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMBLS11_08820 PF03966 Trm112p-like protein AMBLS11_08825 PF02348 Cytidylyltransferase AMBLS11_08840 PF18693 TRAM domain AMBLS11_08840 PF00919 Uncharacterized protein family UPF0004 AMBLS11_08840 PF04055 Radical SAM superfamily AMBLS11_08855 PF00899 ThiF family AMBLS11_08860 PF13409 Glutathione S-transferase, N-terminal domain AMBLS11_08865 PF02678 Pirin AMBLS11_08865 PF05726 Pirin C-terminal cupin domain AMBLS11_08875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMBLS11_08875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMBLS11_08875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMBLS11_08875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMBLS11_08885 PF00285 Citrate synthase, C-terminal domain AMBLS11_08890 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMBLS11_08895 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMBLS11_08900 PF02910 Fumarate reductase flavoprotein C-term AMBLS11_08900 PF00890 FAD binding domain AMBLS11_08905 PF13085 2Fe-2S iron-sulfur cluster binding domain AMBLS11_08910 PF02779 Transketolase, pyrimidine binding domain AMBLS11_08910 PF16078 2-oxoglutarate dehydrogenase N-terminus AMBLS11_08910 PF00676 Dehydrogenase E1 component AMBLS11_08910 PF16870 2-oxoglutarate dehydrogenase C-terminal AMBLS11_08915 PF00364 Biotin-requiring enzyme AMBLS11_08915 PF02817 e3 binding domain AMBLS11_08915 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMBLS11_08920 PF00549 CoA-ligase AMBLS11_08920 PF08442 ATP-grasp domain AMBLS11_08925 PF00549 CoA-ligase AMBLS11_08925 PF02629 CoA binding domain AMBLS11_08935 PF04820 Tryptophan halogenase AMBLS11_08945 PF18494 Pullulanase Ins domain AMBLS11_08945 PF03714 Bacterial pullanase-associated domain AMBLS11_08945 PF11852 Domain of unknown function (DUF3372) AMBLS11_08945 PF17967 Pullulanase N2 domain AMBLS11_08945 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMBLS11_08950 PF01734 Patatin-like phospholipase AMBLS11_08965 PF02371 Transposase IS116/IS110/IS902 family AMBLS11_08965 PF01548 Transposase AMBLS11_08970 PF00128 Alpha amylase, catalytic domain AMBLS11_08970 PF16657 Maltogenic Amylase, C-terminal domain AMBLS11_08970 PF02903 Alpha amylase, N-terminal ig-like domain AMBLS11_08975 PF09087 Cyclomaltodextrinase, N-terminal AMBLS11_08975 PF10438 Cyclo-malto-dextrinase C-terminal domain AMBLS11_08975 PF00128 Alpha amylase, catalytic domain AMBLS11_08985 PF02806 Alpha amylase, C-terminal all-beta domain AMBLS11_08985 PF00686 Starch binding domain AMBLS11_08985 PF01833 IPT/TIG domain AMBLS11_08985 PF00128 Alpha amylase, catalytic domain AMBLS11_08990 PF00356 Bacterial regulatory proteins, lacI family AMBLS11_08995 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMBLS11_08995 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMBLS11_09000 PF02371 Transposase IS116/IS110/IS902 family AMBLS11_09000 PF01548 Transposase AMBLS11_09005 PF00106 short chain dehydrogenase AMBLS11_09010 PF12262 Bacterial virulence factor lipase N-terminal AMBLS11_09015 PF01804 Penicillin amidase AMBLS11_09020 PF01343 Peptidase family S49 AMBLS11_09020 PF08496 Peptidase family S49 N-terminal AMBLS11_09035 PF01784 NIF3 (NGG1p interacting factor 3) AMBLS11_09045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMBLS11_09045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMBLS11_09050 PF00255 Glutathione peroxidase AMBLS11_09055 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMBLS11_09055 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMBLS11_09065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMBLS11_09065 PF02770 Acyl-CoA dehydrogenase, middle domain AMBLS11_09065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMBLS11_09070 PF00378 Enoyl-CoA hydratase/isomerase AMBLS11_09085 PF11893 Domain of unknown function (DUF3413) AMBLS11_09085 PF00884 Sulfatase AMBLS11_09090 PF07208 Protein of unknown function (DUF1414) AMBLS11_09095 PF04245 37-kD nucleoid-associated bacterial protein AMBLS11_09105 PF10145 Phage-related minor tail protein AMBLS11_09105 PF01551 Peptidase family M23 AMBLS11_09105 PF01464 Transglycosylase SLT domain AMBLS11_09125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_09125 PF06580 Histidine kinase AMBLS11_09125 PF07694 5TMR of 5TMR-LYT AMBLS11_09130 PF04397 LytTr DNA-binding domain AMBLS11_09130 PF00072 Response regulator receiver domain AMBLS11_09135 PF00365 Phosphofructokinase AMBLS11_09145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_09145 PF03466 LysR substrate binding domain AMBLS11_09150 PF00106 short chain dehydrogenase AMBLS11_09165 PF00107 Zinc-binding dehydrogenase AMBLS11_09165 PF08240 Alcohol dehydrogenase GroES-like domain AMBLS11_09175 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_09175 PF01627 Hpt domain AMBLS11_09175 PF00989 PAS fold AMBLS11_09175 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMBLS11_09175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_09175 PF00072 Response regulator receiver domain AMBLS11_09205 PF00270 DEAD/DEAH box helicase AMBLS11_09205 PF00271 Helicase conserved C-terminal domain AMBLS11_09210 PF01144 Coenzyme A transferase AMBLS11_09215 PF01144 Coenzyme A transferase AMBLS11_09220 PF03466 LysR substrate binding domain AMBLS11_09220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_09235 PF03466 LysR substrate binding domain AMBLS11_09235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_09240 PF03313 Serine dehydratase alpha chain AMBLS11_09240 PF03315 Serine dehydratase beta chain AMBLS11_09245 PF00293 NUDIX domain AMBLS11_09250 PF04715 Anthranilate synthase component I, N terminal region AMBLS11_09250 PF00425 chorismate binding enzyme AMBLS11_09265 PF02646 RmuC family AMBLS11_09270 PF00082 Subtilase family AMBLS11_09270 PF02225 PA domain AMBLS11_09270 PF05922 Peptidase inhibitor I9 AMBLS11_09270 PF13860 FlgD Ig-like domain AMBLS11_09275 PF00676 Dehydrogenase E1 component AMBLS11_09280 PF02779 Transketolase, pyrimidine binding domain AMBLS11_09280 PF02780 Transketolase, C-terminal domain AMBLS11_09285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMBLS11_09285 PF02817 e3 binding domain AMBLS11_09285 PF00364 Biotin-requiring enzyme AMBLS11_09290 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMBLS11_09295 PF00069 Protein kinase domain AMBLS11_09305 PF00132 Bacterial transferase hexapeptide (six repeats) AMBLS11_09310 PF00266 Aminotransferase class-V AMBLS11_09320 PF13185 GAF domain AMBLS11_09330 PF17516 ProQ C-terminal domain AMBLS11_09330 PF04352 ProQ/FINO family AMBLS11_09335 PF17804 Tail specific protease N-terminal domain AMBLS11_09335 PF11818 C-terminal domain of tail specific protease (DUF3340) AMBLS11_09335 PF00595 PDZ domain AMBLS11_09335 PF03572 Peptidase family S41 AMBLS11_09340 PF00209 Sodium:neurotransmitter symporter family AMBLS11_09350 PF11940 Domain of unknown function (DUF3458) Ig-like fold AMBLS11_09350 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AMBLS11_09350 PF01433 Peptidase family M1 domain AMBLS11_09365 PF07044 Protein of unknown function (DUF1329) AMBLS11_09380 PF05088 Bacterial NAD-glutamate dehydrogenase AMBLS11_09385 PF01180 Dihydroorotate dehydrogenase AMBLS11_09390 PF10672 S-adenosylmethionine-dependent methyltransferase AMBLS11_09390 PF01170 Putative RNA methylase family UPF0020 AMBLS11_09390 PF02926 THUMP domain AMBLS11_09410 PF04957 Ribosome modulation factor AMBLS11_09415 PF07977 FabA-like domain AMBLS11_09425 PF03441 FAD binding domain of DNA photolyase AMBLS11_09425 PF00875 DNA photolyase AMBLS11_09430 PF00875 DNA photolyase AMBLS11_09430 PF03441 FAD binding domain of DNA photolyase AMBLS11_09435 PF00875 DNA photolyase AMBLS11_09435 PF03441 FAD binding domain of DNA photolyase AMBLS11_09440 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AMBLS11_09455 PF00753 Metallo-beta-lactamase superfamily AMBLS11_09455 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMBLS11_09460 PF00589 Phage integrase family AMBLS11_09460 PF02899 Phage integrase, N-terminal SAM-like domain AMBLS11_09470 PF01219 Prokaryotic diacylglycerol kinase AMBLS11_09475 PF00582 Universal stress protein family AMBLS11_09485 PF01645 Conserved region in glutamate synthase AMBLS11_09490 PF00999 Sodium/hydrogen exchanger family AMBLS11_09495 PF00210 Ferritin-like domain AMBLS11_09500 PF00210 Ferritin-like domain AMBLS11_09510 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMBLS11_09525 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AMBLS11_09525 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMBLS11_09535 PF00403 Heavy-metal-associated domain AMBLS11_09550 PF00027 Cyclic nucleotide-binding domain AMBLS11_09550 PF13545 Crp-like helix-turn-helix domain AMBLS11_09555 PF00582 Universal stress protein family AMBLS11_09560 PF01171 PP-loop family AMBLS11_09565 PF01734 Patatin-like phospholipase AMBLS11_09585 PF01810 LysE type translocator AMBLS11_09590 PF02146 Sir2 family AMBLS11_09595 PF00581 Rhodanese-like domain AMBLS11_09600 PF08534 Redoxin AMBLS11_09610 PF00563 EAL domain AMBLS11_09610 PF12792 CSS motif domain associated with EAL AMBLS11_09630 PF00589 Phage integrase family AMBLS11_09635 PF04002 RadC-like JAB domain AMBLS11_09695 PF13356 Arm DNA-binding domain AMBLS11_09695 PF00589 Phage integrase family AMBLS11_09700 PF01066 CDP-alcohol phosphatidyltransferase AMBLS11_09705 PF08459 UvrC Helix-hairpin-helix N-terminal AMBLS11_09705 PF02151 UvrB/uvrC motif AMBLS11_09705 PF01541 GIY-YIG catalytic domain AMBLS11_09710 PF00072 Response regulator receiver domain AMBLS11_09710 PF00196 Bacterial regulatory proteins, luxR family AMBLS11_09715 PF02678 Pirin AMBLS11_09715 PF17954 Quercetinase C-terminal cupin domain AMBLS11_09720 PF00155 Aminotransferase class I and II AMBLS11_09730 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMBLS11_09735 PF07681 DoxX AMBLS11_09740 PF03466 LysR substrate binding domain AMBLS11_09740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_09760 PF01027 Inhibitor of apoptosis-promoting Bax1 AMBLS11_09765 PF02635 DsrE/DsrF-like family AMBLS11_09780 PF04358 DsrC like protein AMBLS11_09810 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_09810 PF00593 TonB dependent receptor AMBLS11_09810 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_09810 PF00593 TonB dependent receptor AMBLS11_09815 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMBLS11_09815 PF02403 Seryl-tRNA synthetase N-terminal domain AMBLS11_09820 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMBLS11_09825 PF00004 ATPase family associated with various cellular activities (AAA) AMBLS11_09825 PF16193 AAA C-terminal domain AMBLS11_09825 PF12002 MgsA AAA+ ATPase C terminal AMBLS11_09835 PF01580 FtsK/SpoIIIE family AMBLS11_09835 PF09397 Ftsk gamma domain AMBLS11_09835 PF17854 FtsK alpha domain AMBLS11_09835 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMBLS11_09840 PF01037 Lrp/AsnC ligand binding domain AMBLS11_09845 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMBLS11_09845 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMBLS11_09850 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMBLS11_09855 PF18073 Rubredoxin metal binding domain AMBLS11_09870 PF00216 Bacterial DNA-binding protein AMBLS11_09875 PF00575 S1 RNA binding domain AMBLS11_09880 PF02224 Cytidylate kinase AMBLS11_09885 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMBLS11_09890 PF00266 Aminotransferase class-V AMBLS11_09895 PF03989 DNA gyrase C-terminal domain, beta-propeller AMBLS11_09895 PF00521 DNA gyrase/topoisomerase IV, subunit A AMBLS11_09905 PF03477 ATP cone domain AMBLS11_09905 PF02867 Ribonucleotide reductase, barrel domain AMBLS11_09905 PF00317 Ribonucleotide reductase, all-alpha domain AMBLS11_09910 PF00268 Ribonucleotide reductase, small chain AMBLS11_09915 PF00111 2Fe-2S iron-sulfur cluster binding domain AMBLS11_09930 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMBLS11_09930 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMBLS11_09935 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_09935 PF00563 EAL domain AMBLS11_09935 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_09940 PF00892 EamA-like transporter family AMBLS11_09945 PF01259 SAICAR synthetase AMBLS11_09950 PF06804 NlpB/DapX lipoprotein AMBLS11_09955 PF00701 Dihydrodipicolinate synthetase family AMBLS11_09965 PF00578 AhpC/TSA family AMBLS11_09970 PF01594 AI-2E family transporter AMBLS11_09975 PF01435 Peptidase family M48 AMBLS11_09985 PF03960 ArsC family AMBLS11_09990 PF03358 NADPH-dependent FMN reductase AMBLS11_10005 PF00308 Bacterial dnaA protein AMBLS11_10015 PF02769 AIR synthase related protein, C-terminal domain AMBLS11_10015 PF00586 AIR synthase related protein, N-terminal domain AMBLS11_10020 PF00551 Formyl transferase AMBLS11_10030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMBLS11_10030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMBLS11_10030 PF09317 Domain of unknown function (DUF1974) AMBLS11_10030 PF02770 Acyl-CoA dehydrogenase, middle domain AMBLS11_10040 PF00196 Bacterial regulatory proteins, luxR family AMBLS11_10040 PF00072 Response regulator receiver domain AMBLS11_10045 PF13649 Methyltransferase domain AMBLS11_10050 PF08003 Protein of unknown function (DUF1698) AMBLS11_10070 PF00128 Alpha amylase, catalytic domain AMBLS11_10075 PF13419 Haloacid dehalogenase-like hydrolase AMBLS11_10080 PF03453 MoeA N-terminal region (domain I and II) AMBLS11_10080 PF03454 MoeA C-terminal region (domain IV) AMBLS11_10080 PF00994 Probable molybdopterin binding domain AMBLS11_10085 PF01554 MatE AMBLS11_10090 PF12804 MobA-like NTP transferase domain AMBLS11_10100 PF00004 ATPase family associated with various cellular activities (AAA) AMBLS11_10100 PF01434 Peptidase family M41 AMBLS11_10100 PF17862 AAA+ lid domain AMBLS11_10105 PF00291 Pyridoxal-phosphate dependent enzyme AMBLS11_10165 PF01548 Transposase AMBLS11_10165 PF02371 Transposase IS116/IS110/IS902 family AMBLS11_10185 PF02371 Transposase IS116/IS110/IS902 family AMBLS11_10185 PF01548 Transposase AMBLS11_10325 PF02567 Phenazine biosynthesis-like protein AMBLS11_10335 PF00378 Enoyl-CoA hydratase/isomerase AMBLS11_10350 PF00255 Glutathione peroxidase AMBLS11_10355 PF02525 Flavodoxin-like fold AMBLS11_10365 PF01053 Cys/Met metabolism PLP-dependent enzyme AMBLS11_10380 PF00155 Aminotransferase class I and II AMBLS11_10385 PF10459 Peptidase S46 AMBLS11_10395 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AMBLS11_10410 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMBLS11_10410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMBLS11_10410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMBLS11_10410 PF02770 Acyl-CoA dehydrogenase, middle domain AMBLS11_10415 PF07883 Cupin domain AMBLS11_10415 PF12833 Helix-turn-helix domain AMBLS11_10420 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_10420 PF00593 TonB dependent receptor AMBLS11_10430 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMBLS11_10430 PF00326 Prolyl oligopeptidase family AMBLS11_10435 PF00873 AcrB/AcrD/AcrF family AMBLS11_10440 PF13533 Biotin-lipoyl like AMBLS11_10450 PF00766 Electron transfer flavoprotein FAD-binding domain AMBLS11_10450 PF01012 Electron transfer flavoprotein domain AMBLS11_10455 PF01012 Electron transfer flavoprotein domain AMBLS11_10470 PF00561 alpha/beta hydrolase fold AMBLS11_10480 PF00258 Flavodoxin AMBLS11_10485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_10485 PF00672 HAMP domain AMBLS11_10490 PF01475 Ferric uptake regulator family AMBLS11_10495 PF01063 Amino-transferase class IV AMBLS11_10500 PF02626 Carboxyltransferase domain, subdomain A and B AMBLS11_10505 PF02682 Carboxyltransferase domain, subdomain C and D AMBLS11_10510 PF03746 LamB/YcsF family AMBLS11_10515 PF17783 CvfB-like winged helix domain AMBLS11_10515 PF13509 S1 domain AMBLS11_10520 PF02566 OsmC-like protein AMBLS11_10525 PF13533 Biotin-lipoyl like AMBLS11_10530 PF00873 AcrB/AcrD/AcrF family AMBLS11_10535 PF00873 AcrB/AcrD/AcrF family AMBLS11_10550 PF00155 Aminotransferase class I and II AMBLS11_10560 PF13286 Phosphohydrolase-associated domain AMBLS11_10560 PF01966 HD domain AMBLS11_10570 PF00174 Oxidoreductase molybdopterin binding domain AMBLS11_10575 PF01794 Ferric reductase like transmembrane component AMBLS11_10590 PF02810 SEC-C motif AMBLS11_10595 PF00128 Alpha amylase, catalytic domain AMBLS11_10605 PF00107 Zinc-binding dehydrogenase AMBLS11_10605 PF08240 Alcohol dehydrogenase GroES-like domain AMBLS11_10615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMBLS11_10615 PF02770 Acyl-CoA dehydrogenase, middle domain AMBLS11_10615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMBLS11_10630 PF00593 TonB dependent receptor AMBLS11_10630 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_10650 PF06969 HemN C-terminal domain AMBLS11_10650 PF04055 Radical SAM superfamily AMBLS11_10655 PF03459 TOBE domain AMBLS11_10655 PF00005 ABC transporter AMBLS11_10660 PF00528 Binding-protein-dependent transport system inner membrane component AMBLS11_10670 PF02391 MoaE protein AMBLS11_10675 PF02597 ThiS family AMBLS11_10680 PF01967 MoaC family AMBLS11_10685 PF00994 Probable molybdopterin binding domain AMBLS11_10690 PF00899 ThiF family AMBLS11_10715 PF00037 4Fe-4S binding domain AMBLS11_10725 PF03435 Saccharopine dehydrogenase NADP binding domain AMBLS11_10730 PF00155 Aminotransferase class I and II AMBLS11_10750 PF01717 Cobalamin-independent synthase, Catalytic domain AMBLS11_10750 PF08267 Cobalamin-independent synthase, N-terminal domain AMBLS11_10755 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_10755 PF00593 TonB dependent receptor AMBLS11_10760 PF00892 EamA-like transporter family AMBLS11_10780 PF01810 LysE type translocator AMBLS11_10785 PF00392 Bacterial regulatory proteins, gntR family AMBLS11_10785 PF00155 Aminotransferase class I and II AMBLS11_10795 PF13538 UvrD-like helicase C-terminal domain AMBLS11_10800 PF12705 PD-(D/E)XK nuclease superfamily AMBLS11_10800 PF13361 UvrD-like helicase C-terminal domain AMBLS11_10800 PF00580 UvrD/REP helicase N-terminal domain AMBLS11_10805 PF17946 RecC C-terminal domain AMBLS11_10815 PF00501 AMP-binding enzyme AMBLS11_10820 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_10820 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_10820 PF00563 EAL domain AMBLS11_10825 PF12706 Beta-lactamase superfamily domain AMBLS11_10825 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMBLS11_10825 PF17770 Ribonuclease J C-terminal domain AMBLS11_10840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_10840 PF03466 LysR substrate binding domain AMBLS11_10860 PF01022 Bacterial regulatory protein, arsR family AMBLS11_10870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_10870 PF03466 LysR substrate binding domain AMBLS11_10880 PF00072 Response regulator receiver domain AMBLS11_10880 PF02954 Bacterial regulatory protein, Fis family AMBLS11_10880 PF00158 Sigma-54 interaction domain AMBLS11_10890 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_10890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_10890 PF08446 PAS fold AMBLS11_10890 PF01590 GAF domain AMBLS11_10890 PF00360 Phytochrome region AMBLS11_10895 PF00072 Response regulator receiver domain AMBLS11_10900 PF09308 LuxQ, periplasmic AMBLS11_10900 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_10900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_10900 PF00072 Response regulator receiver domain AMBLS11_10925 PF01965 DJ-1/PfpI family AMBLS11_10930 PF07043 Protein of unknown function (DUF1328) AMBLS11_10950 PF07023 Protein of unknown function (DUF1315) AMBLS11_10960 PF01235 Sodium:alanine symporter family AMBLS11_10965 PF18027 Cytosolic carboxypeptidase N-terminal domain AMBLS11_10965 PF00246 Zinc carboxypeptidase AMBLS11_10970 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMBLS11_10970 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMBLS11_10980 PF01641 SelR domain AMBLS11_10985 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMBLS11_10985 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMBLS11_10990 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMBLS11_10990 PF00128 Alpha amylase, catalytic domain AMBLS11_10995 PF00128 Alpha amylase, catalytic domain AMBLS11_10995 PF02806 Alpha amylase, C-terminal all-beta domain AMBLS11_10995 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMBLS11_11000 PF02446 4-alpha-glucanotransferase AMBLS11_11005 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMBLS11_11005 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMBLS11_11010 PF01263 Aldose 1-epimerase AMBLS11_11020 PF01081 KDPG and KHG aldolase AMBLS11_11025 PF02685 Glucokinase AMBLS11_11030 PF00920 Dehydratase family AMBLS11_11035 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMBLS11_11040 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMBLS11_11040 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMBLS11_11045 PF01380 SIS domain AMBLS11_11045 PF01418 Helix-turn-helix domain, rpiR family AMBLS11_11050 PF00224 Pyruvate kinase, barrel domain AMBLS11_11050 PF02887 Pyruvate kinase, alpha/beta domain AMBLS11_11055 PF01048 Phosphorylase superfamily AMBLS11_11075 PF04972 BON domain AMBLS11_11100 PF09347 Domain of unknown function (DUF1989) AMBLS11_11125 PF04962 KduI/IolB family AMBLS11_11130 PF03480 Bacterial extracellular solute-binding protein, family 7 AMBLS11_11135 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AMBLS11_11140 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMBLS11_11145 PF00356 Bacterial regulatory proteins, lacI family AMBLS11_11150 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AMBLS11_11150 PF08666 SAF domain AMBLS11_11155 PF02614 Glucuronate isomerase AMBLS11_11160 PF01232 Mannitol dehydrogenase Rossmann domain AMBLS11_11160 PF08125 Mannitol dehydrogenase C-terminal domain AMBLS11_11165 PF01081 KDPG and KHG aldolase AMBLS11_11170 PF00294 pfkB family carbohydrate kinase AMBLS11_11175 PF13472 GDSL-like Lipase/Acylhydrolase family AMBLS11_11185 PF07470 Glycosyl Hydrolase Family 88 AMBLS11_11190 PF00295 Glycosyl hydrolases family 28 AMBLS11_11195 PF01095 Pectinesterase AMBLS11_11200 PF00072 Response regulator receiver domain AMBLS11_11200 PF01627 Hpt domain AMBLS11_11200 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_11200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_11200 PF00672 HAMP domain AMBLS11_11200 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMBLS11_11215 PF04231 Endonuclease I AMBLS11_11220 PF11838 ERAP1-like C-terminal domain AMBLS11_11220 PF01433 Peptidase family M1 domain AMBLS11_11225 PF00672 HAMP domain AMBLS11_11225 PF02743 Cache domain AMBLS11_11225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_11240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_11240 PF03466 LysR substrate binding domain AMBLS11_11245 PF01965 DJ-1/PfpI family AMBLS11_11250 PF00465 Iron-containing alcohol dehydrogenase AMBLS11_11255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMBLS11_11270 PF11849 Domain of unknown function (DUF3369) AMBLS11_11275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_11275 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_11275 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMBLS11_11280 PF12697 Alpha/beta hydrolase family AMBLS11_11285 PF00561 alpha/beta hydrolase fold AMBLS11_11295 PF02627 Carboxymuconolactone decarboxylase family AMBLS11_11310 PF00939 Sodium:sulfate symporter transmembrane region AMBLS11_11315 PF00692 dUTPase AMBLS11_11320 PF10609 NUBPL iron-transfer P-loop NTPase AMBLS11_11325 PF08264 Anticodon-binding domain of tRNA AMBLS11_11325 PF09334 tRNA synthetases class I (M) AMBLS11_11325 PF01588 Putative tRNA binding domain AMBLS11_11330 PF05552 Conserved TM helix AMBLS11_11330 PF00924 Mechanosensitive ion channel AMBLS11_11335 PF08241 Methyltransferase domain AMBLS11_11340 PF00753 Metallo-beta-lactamase superfamily AMBLS11_11340 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMBLS11_11345 PF01476 LysM domain AMBLS11_11345 PF01464 Transglycosylase SLT domain AMBLS11_11360 PF09190 DALR domain AMBLS11_11360 PF01406 tRNA synthetases class I (C) catalytic domain AMBLS11_11365 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMBLS11_11370 PF00149 Calcineurin-like phosphoesterase AMBLS11_11380 PF15975 Flotillin AMBLS11_11380 PF01145 SPFH domain / Band 7 family AMBLS11_11385 PF03466 LysR substrate binding domain AMBLS11_11385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_11400 PF00128 Alpha amylase, catalytic domain AMBLS11_11405 PF01638 HxlR-like helix-turn-helix AMBLS11_11410 PF00107 Zinc-binding dehydrogenase AMBLS11_11410 PF08240 Alcohol dehydrogenase GroES-like domain AMBLS11_11425 PF08240 Alcohol dehydrogenase GroES-like domain AMBLS11_11425 PF00107 Zinc-binding dehydrogenase AMBLS11_11450 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AMBLS11_11460 PF00156 Phosphoribosyl transferase domain AMBLS11_11465 PF02674 Colicin V production protein AMBLS11_11470 PF05036 Sporulation related domain AMBLS11_11475 PF02875 Mur ligase family, glutamate ligase domain AMBLS11_11475 PF08245 Mur ligase middle domain AMBLS11_11480 PF17848 Acetyl-coA carboxylase zinc finger domain AMBLS11_11480 PF01039 Carboxyl transferase domain AMBLS11_11485 PF01416 tRNA pseudouridine synthase AMBLS11_11495 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMBLS11_11495 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMBLS11_11500 PF11890 Domain of unknown function (DUF3410) AMBLS11_11500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMBLS11_11500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMBLS11_11505 PF00596 Class II Aldolase and Adducin N-terminal domain AMBLS11_11520 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AMBLS11_11525 PF00109 Beta-ketoacyl synthase, N-terminal domain AMBLS11_11525 PF02801 Beta-ketoacyl synthase, C-terminal domain AMBLS11_11530 PF13193 AMP-binding enzyme C-terminal domain AMBLS11_11530 PF00501 AMP-binding enzyme AMBLS11_11535 PF01266 FAD dependent oxidoreductase AMBLS11_11535 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AMBLS11_11555 PF00005 ABC transporter AMBLS11_11560 PF02667 Short chain fatty acid transporter AMBLS11_11565 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_11565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_11565 PF01627 Hpt domain AMBLS11_11565 PF00672 HAMP domain AMBLS11_11565 PF00072 Response regulator receiver domain AMBLS11_11565 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMBLS11_11570 PF02627 Carboxymuconolactone decarboxylase family AMBLS11_11575 PF05193 Peptidase M16 inactive domain AMBLS11_11575 PF00675 Insulinase (Peptidase family M16) AMBLS11_11590 PF04315 Elongation factor P hydroxylase AMBLS11_11615 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMBLS11_11615 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMBLS11_11620 PF00378 Enoyl-CoA hydratase/isomerase AMBLS11_11625 PF00440 Bacterial regulatory proteins, tetR family AMBLS11_11625 PF02909 Tetracyclin repressor-like, C-terminal domain AMBLS11_11630 PF00732 GMC oxidoreductase AMBLS11_11630 PF05199 GMC oxidoreductase AMBLS11_11640 PF06974 Protein of unknown function (DUF1298) AMBLS11_11640 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMBLS11_11650 PF04286 Protein of unknown function (DUF445) AMBLS11_11675 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMBLS11_11675 PF00326 Prolyl oligopeptidase family AMBLS11_11680 PF07840 FadR C-terminal domain AMBLS11_11680 PF00392 Bacterial regulatory proteins, gntR family AMBLS11_11685 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AMBLS11_11690 PF02600 Disulfide bond formation protein DsbB AMBLS11_11695 PF13302 Acetyltransferase (GNAT) domain AMBLS11_11700 PF03692 Putative zinc- or iron-chelating domain AMBLS11_11705 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMBLS11_11715 PF05166 YcgL domain AMBLS11_11720 PF00570 HRDC domain AMBLS11_11720 PF01612 3'-5' exonuclease AMBLS11_11725 PF13193 AMP-binding enzyme C-terminal domain AMBLS11_11725 PF00501 AMP-binding enzyme AMBLS11_11730 PF12697 Alpha/beta hydrolase family AMBLS11_11745 PF00814 Glycoprotease family AMBLS11_11750 PF06733 DEAD_2 AMBLS11_11750 PF13307 Helicase C-terminal domain AMBLS11_11775 PF01569 PAP2 superfamily AMBLS11_11800 PF00128 Alpha amylase, catalytic domain AMBLS11_11835 PF01634 ATP phosphoribosyltransferase AMBLS11_11835 PF08029 HisG, C-terminal domain AMBLS11_11840 PF00815 Histidinol dehydrogenase AMBLS11_11845 PF00155 Aminotransferase class I and II AMBLS11_11850 PF00475 Imidazoleglycerol-phosphate dehydratase AMBLS11_11855 PF00117 Glutamine amidotransferase class-I AMBLS11_11860 PF00977 Histidine biosynthesis protein AMBLS11_11865 PF00977 Histidine biosynthesis protein AMBLS11_11870 PF01502 Phosphoribosyl-AMP cyclohydrolase AMBLS11_11870 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMBLS11_11880 PF01226 Formate/nitrite transporter AMBLS11_11885 PF00672 HAMP domain AMBLS11_11885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_11890 PF00675 Insulinase (Peptidase family M16) AMBLS11_11890 PF05193 Peptidase M16 inactive domain AMBLS11_11895 PF10502 Signal peptidase, peptidase S26 AMBLS11_11900 PF00593 TonB dependent receptor AMBLS11_11900 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_11910 PF05191 Adenylate kinase, active site lid AMBLS11_11915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_11915 PF00183 Hsp90 protein AMBLS11_11920 PF13662 Toprim domain AMBLS11_11920 PF02132 RecR protein AMBLS11_11980 PF12167 Arm DNA-binding domain AMBLS11_11980 PF00589 Phage integrase family AMBLS11_11985 PF03203 MerC mercury resistance protein AMBLS11_11990 PF00376 MerR family regulatory protein AMBLS11_11990 PF09278 MerR, DNA binding AMBLS11_11995 PF02575 YbaB/EbfC DNA-binding family AMBLS11_12000 PF12169 DNA polymerase III subunits gamma and tau domain III AMBLS11_12000 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMBLS11_12000 PF12170 DNA polymerase III tau subunit V interacting with alpha AMBLS11_12005 PF00156 Phosphoribosyl transferase domain AMBLS11_12015 PF05114 Protein of unknown function (DUF692) AMBLS11_12025 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_12035 PF01590 GAF domain AMBLS11_12035 PF00563 EAL domain AMBLS11_12035 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_12035 PF00360 Phytochrome region AMBLS11_12045 PF01066 CDP-alcohol phosphatidyltransferase AMBLS11_12065 PF09330 D-lactate dehydrogenase, membrane binding AMBLS11_12065 PF01565 FAD binding domain AMBLS11_12075 PF13276 HTH-like domain AMBLS11_12075 PF00665 Integrase core domain AMBLS11_12075 PF13333 Integrase core domain AMBLS11_12080 PF02861 Clp amino terminal domain, pathogenicity island component AMBLS11_12080 PF10431 C-terminal, D2-small domain, of ClpB protein AMBLS11_12080 PF00004 ATPase family associated with various cellular activities (AAA) AMBLS11_12080 PF07724 AAA domain (Cdc48 subfamily) AMBLS11_12080 PF17871 AAA lid domain AMBLS11_12090 PF01479 S4 domain AMBLS11_12090 PF00849 RNA pseudouridylate synthase AMBLS11_12095 PF13525 Outer membrane lipoprotein AMBLS11_12105 PF04542 Sigma-70 region 2 AMBLS11_12105 PF04545 Sigma-70, region 4 AMBLS11_12120 PF00106 short chain dehydrogenase AMBLS11_12140 PF00691 OmpA family AMBLS11_12140 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMBLS11_12145 PF01618 MotA/TolQ/ExbB proton channel family AMBLS11_12150 PF02609 Exonuclease VII small subunit AMBLS11_12155 PF00348 Polyprenyl synthetase AMBLS11_12160 PF02779 Transketolase, pyrimidine binding domain AMBLS11_12160 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMBLS11_12160 PF02780 Transketolase, C-terminal domain AMBLS11_12165 PF04608 Phosphatidylglycerophosphatase A AMBLS11_12170 PF02769 AIR synthase related protein, C-terminal domain AMBLS11_12170 PF00586 AIR synthase related protein, N-terminal domain AMBLS11_12175 PF01029 NusB family AMBLS11_12180 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMBLS11_12185 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMBLS11_12185 PF00925 GTP cyclohydrolase II AMBLS11_12190 PF00677 Lumazine binding domain AMBLS11_12195 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMBLS11_12195 PF01872 RibD C-terminal domain AMBLS11_12200 PF03477 ATP cone domain AMBLS11_12205 PF00464 Serine hydroxymethyltransferase AMBLS11_12215 PF00005 ABC transporter AMBLS11_12215 PF12848 ABC transporter AMBLS11_12225 PF18073 Rubredoxin metal binding domain AMBLS11_12235 PF18429 Domain of unknown function (DUF5609) AMBLS11_12245 PF01026 TatD related DNase AMBLS11_12250 PF01243 Pyridoxamine 5'-phosphate oxidase AMBLS11_12250 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMBLS11_12255 PF01926 50S ribosome-binding GTPase AMBLS11_12255 PF07650 KH domain AMBLS11_12260 PF14622 Ribonuclease-III-like AMBLS11_12260 PF00035 Double-stranded RNA binding motif AMBLS11_12265 PF10502 Signal peptidase, peptidase S26 AMBLS11_12270 PF00679 Elongation factor G C-terminus AMBLS11_12270 PF00009 Elongation factor Tu GTP binding domain AMBLS11_12270 PF03144 Elongation factor Tu domain 2 AMBLS11_12270 PF06421 GTP-binding protein LepA C-terminus AMBLS11_12370 PF00436 Single-strand binding protein family AMBLS11_12535 PF03888 MucB/RseB N-terminal domain AMBLS11_12535 PF17188 MucB/RseB C-terminal domain AMBLS11_12545 PF04542 Sigma-70 region 2 AMBLS11_12545 PF08281 Sigma-70, region 4 AMBLS11_12550 PF02910 Fumarate reductase flavoprotein C-term AMBLS11_12550 PF00890 FAD binding domain AMBLS11_12565 PF03937 Flavinator of succinate dehydrogenase AMBLS11_12575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMBLS11_12580 PF00543 Nitrogen regulatory protein P-II AMBLS11_12585 PF02540 NAD synthase AMBLS11_12600 PF07963 Prokaryotic N-terminal methylation motif AMBLS11_12600 PF14245 Type IV pilin PilA AMBLS11_12620 PF00114 Pilin (bacterial filament) AMBLS11_12620 PF07963 Prokaryotic N-terminal methylation motif AMBLS11_12645 PF02401 LytB protein AMBLS11_12650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMBLS11_12655 PF01252 Signal peptidase (SPase) II AMBLS11_12660 PF06827 Zinc finger found in FPG and IleRS AMBLS11_12660 PF00133 tRNA synthetases class I (I, L, M and V) AMBLS11_12660 PF08264 Anticodon-binding domain of tRNA AMBLS11_12665 PF01687 Riboflavin kinase AMBLS11_12665 PF06574 FAD synthetase AMBLS11_12670 PF03023 Lipid II flippase MurJ AMBLS11_12675 PF01649 Ribosomal protein S20 AMBLS11_12680 PF00106 short chain dehydrogenase AMBLS11_12690 PF00106 short chain dehydrogenase AMBLS11_12695 PF01758 Sodium Bile acid symporter family AMBLS11_12700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_12700 PF03466 LysR substrate binding domain AMBLS11_12715 PF07687 Peptidase dimerisation domain AMBLS11_12715 PF01546 Peptidase family M20/M25/M40 AMBLS11_12725 PF00216 Bacterial DNA-binding protein AMBLS11_12730 PF05362 Lon protease (S16) C-terminal proteolytic domain AMBLS11_12730 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMBLS11_12730 PF00004 ATPase family associated with various cellular activities (AAA) AMBLS11_12735 PF07724 AAA domain (Cdc48 subfamily) AMBLS11_12735 PF10431 C-terminal, D2-small domain, of ClpB protein AMBLS11_12735 PF06689 ClpX C4-type zinc finger AMBLS11_12740 PF00574 Clp protease AMBLS11_12745 PF05698 Bacterial trigger factor protein (TF) C-terminus AMBLS11_12745 PF05697 Bacterial trigger factor protein (TF) AMBLS11_12745 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMBLS11_12750 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMBLS11_12750 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMBLS11_12760 PF01980 tRNA-methyltransferase O AMBLS11_12760 PF18389 TrmO C-terminal domain AMBLS11_12765 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMBLS11_12765 PF03129 Anticodon binding domain AMBLS11_12780 PF02253 Phospholipase A1 AMBLS11_12785 PF00850 Histone deacetylase domain AMBLS11_12790 PF00672 HAMP domain AMBLS11_12790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_12805 PF00117 Glutamine amidotransferase class-I AMBLS11_12805 PF00958 GMP synthase C terminal domain AMBLS11_12805 PF02540 NAD synthase AMBLS11_12810 PF00571 CBS domain AMBLS11_12810 PF00478 IMP dehydrogenase / GMP reductase domain AMBLS11_12815 PF13742 OB-fold nucleic acid binding domain AMBLS11_12815 PF02601 Exonuclease VII, large subunit AMBLS11_12835 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMBLS11_12835 PF01926 50S ribosome-binding GTPase AMBLS11_12840 PF13360 PQQ-like domain AMBLS11_12845 PF09976 Tetratricopeptide repeat-like domain AMBLS11_12850 PF13393 Histidyl-tRNA synthetase AMBLS11_12850 PF03129 Anticodon binding domain AMBLS11_12855 PF04551 GcpE protein AMBLS11_12860 PF13464 Domain of unknown function (DUF4115) AMBLS11_12870 PF04055 Radical SAM superfamily AMBLS11_12880 PF00334 Nucleoside diphosphate kinase AMBLS11_12885 PF02657 Fe-S metabolism associated domain AMBLS11_12890 PF01883 Iron-sulfur cluster assembly protein AMBLS11_12895 PF01521 Iron-sulphur cluster biosynthesis AMBLS11_12900 PF00266 Aminotransferase class-V AMBLS11_12905 PF01458 Uncharacterized protein family (UPF0051) AMBLS11_12910 PF00005 ABC transporter AMBLS11_12915 PF01458 Uncharacterized protein family (UPF0051) AMBLS11_12920 PF00266 Aminotransferase class-V AMBLS11_12925 PF02082 Transcriptional regulator AMBLS11_12940 PF06426 Serine acetyltransferase, N-terminal AMBLS11_12940 PF00132 Bacterial transferase hexapeptide (six repeats) AMBLS11_12945 PF00588 SpoU rRNA Methylase family AMBLS11_12950 PF00459 Inositol monophosphatase family AMBLS11_12960 PF04397 LytTr DNA-binding domain AMBLS11_12960 PF00072 Response regulator receiver domain AMBLS11_12965 PF02355 Protein export membrane protein AMBLS11_12965 PF07549 SecD/SecF GG Motif AMBLS11_12970 PF07549 SecD/SecF GG Motif AMBLS11_12970 PF13721 SecD export protein N-terminal TM region AMBLS11_12970 PF02355 Protein export membrane protein AMBLS11_12975 PF02699 Preprotein translocase subunit AMBLS11_12980 PF01702 Queuine tRNA-ribosyltransferase AMBLS11_12985 PF02547 Queuosine biosynthesis protein AMBLS11_13000 PF04012 PspA/IM30 family AMBLS11_13020 PF06693 Protein of unknown function (DUF1190) AMBLS11_13025 PF03738 Glutathionylspermidine synthase preATP-grasp AMBLS11_13040 PF04960 Glutaminase AMBLS11_13045 PF00245 Alkaline phosphatase AMBLS11_13050 PF00072 Response regulator receiver domain AMBLS11_13055 PF00463 Isocitrate lyase family AMBLS11_13060 PF03466 LysR substrate binding domain AMBLS11_13060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_13065 PF01274 Malate synthase AMBLS11_13075 PF01370 NAD dependent epimerase/dehydratase family AMBLS11_13080 PF13180 PDZ domain AMBLS11_13100 PF00899 ThiF family AMBLS11_13105 PF00132 Bacterial transferase hexapeptide (six repeats) AMBLS11_13125 PF00534 Glycosyl transferases group 1 AMBLS11_13125 PF11380 Stealth protein CR2, conserved region 2 AMBLS11_13125 PF17102 Stealth protein CR3, conserved region 3 AMBLS11_13125 PF17101 Stealth protein CR1, conserved region 1 AMBLS11_13125 PF17103 Stealth protein CR4, conserved region 4 AMBLS11_13130 PF13439 Glycosyltransferase Family 4 AMBLS11_13130 PF00534 Glycosyl transferases group 1 AMBLS11_13165 PF00535 Glycosyl transferase family 2 AMBLS11_13185 PF02397 Bacterial sugar transferase AMBLS11_13200 PF13614 AAA domain AMBLS11_13210 PF13401 AAA domain AMBLS11_13210 PF01471 Putative peptidoglycan binding domain AMBLS11_13215 PF01541 GIY-YIG catalytic domain AMBLS11_13225 PF03710 Glutamate-ammonia ligase adenylyltransferase AMBLS11_13225 PF08335 GlnD PII-uridylyltransferase AMBLS11_13235 PF03279 Bacterial lipid A biosynthesis acyltransferase AMBLS11_13265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMBLS11_13265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMBLS11_13265 PF02770 Acyl-CoA dehydrogenase, middle domain AMBLS11_13265 PF09317 Domain of unknown function (DUF1974) AMBLS11_13280 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_13280 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_13280 PF00563 EAL domain AMBLS11_13285 PF00265 Thymidine kinase AMBLS11_13295 PF04820 Tryptophan halogenase AMBLS11_13300 PF00356 Bacterial regulatory proteins, lacI family AMBLS11_13320 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMBLS11_13320 PF14508 Glycosyl-hydrolase 97 N-terminal AMBLS11_13320 PF10566 Glycoside hydrolase 97 AMBLS11_13325 PF01926 50S ribosome-binding GTPase AMBLS11_13330 PF00588 SpoU rRNA Methylase family AMBLS11_13330 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMBLS11_13370 PF00171 Aldehyde dehydrogenase family AMBLS11_13375 PF05199 GMC oxidoreductase AMBLS11_13375 PF00732 GMC oxidoreductase AMBLS11_13390 PF05971 RNA methyltransferase AMBLS11_13395 PF09278 MerR, DNA binding AMBLS11_13395 PF00376 MerR family regulatory protein AMBLS11_13425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMBLS11_13425 PF18158 Adaptive response protein AidB N-terminal domain AMBLS11_13425 PF02770 Acyl-CoA dehydrogenase, middle domain AMBLS11_13450 PF03965 Penicillinase repressor AMBLS11_13470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMBLS11_13480 PF00111 2Fe-2S iron-sulfur cluster binding domain AMBLS11_13480 PF01799 [2Fe-2S] binding domain AMBLS11_13485 PF00941 FAD binding domain in molybdopterin dehydrogenase AMBLS11_13485 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMBLS11_13490 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMBLS11_13490 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMBLS11_13515 PF00106 short chain dehydrogenase AMBLS11_13520 PF01965 DJ-1/PfpI family AMBLS11_13525 PF03631 Virulence factor BrkB AMBLS11_13530 PF07690 Major Facilitator Superfamily AMBLS11_13545 PF00072 Response regulator receiver domain AMBLS11_13545 PF04397 LytTr DNA-binding domain AMBLS11_13560 PF00873 AcrB/AcrD/AcrF family AMBLS11_13625 PF07690 Major Facilitator Superfamily AMBLS11_13635 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMBLS11_13635 PF06827 Zinc finger found in FPG and IleRS AMBLS11_13635 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMBLS11_13655 PF00570 HRDC domain AMBLS11_13655 PF00270 DEAD/DEAH box helicase AMBLS11_13655 PF09382 RQC domain AMBLS11_13655 PF16124 RecQ zinc-binding AMBLS11_13655 PF00271 Helicase conserved C-terminal domain AMBLS11_13670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_13670 PF00072 Response regulator receiver domain AMBLS11_13670 PF01627 Hpt domain AMBLS11_13670 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_13670 PF00672 HAMP domain AMBLS11_13670 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMBLS11_13680 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_13680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_13680 PF01590 GAF domain AMBLS11_13680 PF08446 PAS fold AMBLS11_13680 PF00360 Phytochrome region AMBLS11_13685 PF07995 Glucose / Sorbosone dehydrogenase AMBLS11_13700 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_13700 PF00072 Response regulator receiver domain AMBLS11_13705 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_13705 PF00989 PAS fold AMBLS11_13705 PF11808 Phosphate regulon sensor protein PhoR AMBLS11_13705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_13745 PF01597 Glycine cleavage H-protein AMBLS11_13750 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMBLS11_13750 PF01571 Aminomethyltransferase folate-binding domain AMBLS11_13755 PF07690 Major Facilitator Superfamily AMBLS11_13760 PF01979 Amidohydrolase family AMBLS11_13765 PF01380 SIS domain AMBLS11_13770 PF01869 BadF/BadG/BcrA/BcrD ATPase family AMBLS11_13775 PF03173 Putative carbohydrate binding domain AMBLS11_13775 PF00728 Glycosyl hydrolase family 20, catalytic domain AMBLS11_13775 PF02838 Glycosyl hydrolase family 20, domain 2 AMBLS11_13785 PF00356 Bacterial regulatory proteins, lacI family AMBLS11_13790 PF04820 Tryptophan halogenase AMBLS11_13795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_13795 PF03466 LysR substrate binding domain AMBLS11_13800 PF00582 Universal stress protein family AMBLS11_13805 PF02652 L-lactate permease AMBLS11_13815 PF01321 Creatinase/Prolidase N-terminal domain AMBLS11_13815 PF00557 Metallopeptidase family M24 AMBLS11_13830 PF01494 FAD binding domain AMBLS11_13835 PF01494 FAD binding domain AMBLS11_13840 PF00557 Metallopeptidase family M24 AMBLS11_13840 PF05195 Aminopeptidase P, N-terminal domain AMBLS11_13845 PF03695 Uncharacterised protein family (UPF0149) AMBLS11_13850 PF00294 pfkB family carbohydrate kinase AMBLS11_13855 PF01156 Inosine-uridine preferring nucleoside hydrolase AMBLS11_13860 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMBLS11_13860 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_13860 PF00672 HAMP domain AMBLS11_13860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_13860 PF01627 Hpt domain AMBLS11_13860 PF00072 Response regulator receiver domain AMBLS11_13865 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMBLS11_13870 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMBLS11_13875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMBLS11_13875 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMBLS11_13875 PF01842 ACT domain AMBLS11_13895 PF06945 Protein of unknown function (DUF1289) AMBLS11_13905 PF00873 AcrB/AcrD/AcrF family AMBLS11_13910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMBLS11_13915 PF03466 LysR substrate binding domain AMBLS11_13915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_13920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMBLS11_13920 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMBLS11_13925 PF00364 Biotin-requiring enzyme AMBLS11_13925 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMBLS11_13925 PF02817 e3 binding domain AMBLS11_13930 PF00456 Transketolase, thiamine diphosphate binding domain AMBLS11_13930 PF17831 Pyruvate dehydrogenase E1 component middle domain AMBLS11_13935 PF07729 FCD domain AMBLS11_13935 PF00392 Bacterial regulatory proteins, gntR family AMBLS11_13945 PF01510 N-acetylmuramoyl-L-alanine amidase AMBLS11_13955 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMBLS11_13955 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMBLS11_13960 PF07963 Prokaryotic N-terminal methylation motif AMBLS11_13965 PF00482 Type II secretion system (T2SS), protein F AMBLS11_13970 PF01478 Type IV leader peptidase family AMBLS11_13970 PF06750 Bacterial Peptidase A24 N-terminal domain AMBLS11_13975 PF01121 Dephospho-CoA kinase AMBLS11_13980 PF07072 Cell division protein AMBLS11_13990 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMBLS11_13995 PF00293 NUDIX domain AMBLS11_14000 PF07516 SecA Wing and Scaffold domain AMBLS11_14000 PF01043 SecA preprotein cross-linking domain AMBLS11_14000 PF07517 SecA DEAD-like domain AMBLS11_14000 PF02810 SEC-C motif AMBLS11_14005 PF08525 Opacity-associated protein A N-terminal motif AMBLS11_14005 PF01551 Peptidase family M23 AMBLS11_14005 PF01476 LysM domain AMBLS11_14010 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMBLS11_14015 PF00091 Tubulin/FtsZ family, GTPase domain AMBLS11_14015 PF12327 FtsZ family, C-terminal domain AMBLS11_14020 PF02491 SHS2 domain inserted in FTSA AMBLS11_14025 PF03799 Cell division protein FtsQ AMBLS11_14025 PF08478 POTRA domain, FtsQ-type AMBLS11_14030 PF07478 D-ala D-ala ligase C-terminus AMBLS11_14030 PF01820 D-ala D-ala ligase N-terminus AMBLS11_14035 PF08245 Mur ligase middle domain AMBLS11_14035 PF02875 Mur ligase family, glutamate ligase domain AMBLS11_14035 PF01225 Mur ligase family, catalytic domain AMBLS11_14040 PF03033 Glycosyltransferase family 28 N-terminal domain AMBLS11_14040 PF04101 Glycosyltransferase family 28 C-terminal domain AMBLS11_14045 PF01098 Cell cycle protein AMBLS11_14050 PF02875 Mur ligase family, glutamate ligase domain AMBLS11_14050 PF08245 Mur ligase middle domain AMBLS11_14055 PF00953 Glycosyl transferase family 4 AMBLS11_14055 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMBLS11_14060 PF08245 Mur ligase middle domain AMBLS11_14060 PF02875 Mur ligase family, glutamate ligase domain AMBLS11_14060 PF01225 Mur ligase family, catalytic domain AMBLS11_14065 PF02875 Mur ligase family, glutamate ligase domain AMBLS11_14065 PF08245 Mur ligase middle domain AMBLS11_14065 PF01225 Mur ligase family, catalytic domain AMBLS11_14070 PF00905 Penicillin binding protein transpeptidase domain AMBLS11_14070 PF03717 Penicillin-binding Protein dimerisation domain AMBLS11_14075 PF04999 Cell division protein FtsL AMBLS11_14080 PF01795 MraW methylase family AMBLS11_14085 PF02381 MraZ protein, putative antitoxin-like AMBLS11_14105 PF00873 AcrB/AcrD/AcrF family AMBLS11_14110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMBLS11_14110 PF00529 HlyD membrane-fusion protein of T1SS AMBLS11_14130 PF08534 Redoxin AMBLS11_14130 PF00462 Glutaredoxin AMBLS11_14135 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMBLS11_14145 PF17158 Membrane-associated sensor, integral membrane domain AMBLS11_14145 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_14155 PF00158 Sigma-54 interaction domain AMBLS11_14155 PF00072 Response regulator receiver domain AMBLS11_14155 PF02954 Bacterial regulatory protein, Fis family AMBLS11_14160 PF13426 PAS domain AMBLS11_14160 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_14160 PF00672 HAMP domain AMBLS11_14160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_14165 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMBLS11_14165 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMBLS11_14180 PF05552 Conserved TM helix AMBLS11_14180 PF00924 Mechanosensitive ion channel AMBLS11_14185 PF04452 RNA methyltransferase AMBLS11_14190 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMBLS11_14190 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMBLS11_14195 PF02622 Uncharacterized ACR, COG1678 AMBLS11_14200 PF03652 Holliday junction resolvase AMBLS11_14210 PF00437 Type II/IV secretion system protein AMBLS11_14215 PF00437 Type II/IV secretion system protein AMBLS11_14220 PF01168 Alanine racemase, N-terminal domain AMBLS11_14225 PF03807 NADP oxidoreductase coenzyme F420-dependent AMBLS11_14225 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMBLS11_14230 PF02325 YGGT family AMBLS11_14240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMBLS11_14240 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMBLS11_14265 PF00080 Copper/zinc superoxide dismutase (SODC) AMBLS11_14270 PF02566 OsmC-like protein AMBLS11_14280 PF03591 AzlC protein AMBLS11_14290 PF07690 Major Facilitator Superfamily AMBLS11_14300 PF03883 Peroxide stress protein YaaA AMBLS11_14305 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMBLS11_14310 PF00342 Phosphoglucose isomerase AMBLS11_14320 PF03167 Uracil DNA glycosylase superfamily AMBLS11_14325 PF00291 Pyridoxal-phosphate dependent enzyme AMBLS11_14325 PF14821 Threonine synthase N terminus AMBLS11_14330 PF00288 GHMP kinases N terminal domain AMBLS11_14330 PF08544 GHMP kinases C terminal AMBLS11_14335 PF00742 Homoserine dehydrogenase AMBLS11_14335 PF03447 Homoserine dehydrogenase, NAD binding domain AMBLS11_14335 PF00696 Amino acid kinase family AMBLS11_14335 PF13840 ACT domain AMBLS11_14335 PF01842 ACT domain AMBLS11_14340 PF17755 UvrA DNA-binding domain AMBLS11_14345 PF03466 LysR substrate binding domain AMBLS11_14345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_14350 PF00107 Zinc-binding dehydrogenase AMBLS11_14350 PF08240 Alcohol dehydrogenase GroES-like domain AMBLS11_14355 PF00072 Response regulator receiver domain AMBLS11_14355 PF00196 Bacterial regulatory proteins, luxR family AMBLS11_14360 PF07730 Histidine kinase AMBLS11_14360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_14375 PF01022 Bacterial regulatory protein, arsR family AMBLS11_14385 PF03358 NADPH-dependent FMN reductase AMBLS11_14390 PF01758 Sodium Bile acid symporter family AMBLS11_14395 PF13333 Integrase core domain AMBLS11_14395 PF00665 Integrase core domain AMBLS11_14395 PF13276 HTH-like domain AMBLS11_14405 PF00072 Response regulator receiver domain AMBLS11_14410 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AMBLS11_14415 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_14415 PF00072 Response regulator receiver domain AMBLS11_14420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_14420 PF00672 HAMP domain AMBLS11_14420 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_14440 PF00291 Pyridoxal-phosphate dependent enzyme AMBLS11_14445 PF04116 Fatty acid hydroxylase superfamily AMBLS11_14465 PF03435 Saccharopine dehydrogenase NADP binding domain AMBLS11_14465 PF16653 Saccharopine dehydrogenase C-terminal domain AMBLS11_14470 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMBLS11_14485 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMBLS11_14490 PF04348 LppC putative lipoprotein AMBLS11_14495 PF02021 Uncharacterised protein family UPF0102 AMBLS11_14500 PF00534 Glycosyl transferases group 1 AMBLS11_14505 PF13580 SIS domain AMBLS11_14510 PF04972 BON domain AMBLS11_14515 PF07690 Major Facilitator Superfamily AMBLS11_14525 PF00893 Small Multidrug Resistance protein AMBLS11_14530 PF07730 Histidine kinase AMBLS11_14535 PF00072 Response regulator receiver domain AMBLS11_14535 PF00196 Bacterial regulatory proteins, luxR family AMBLS11_14550 PF00593 TonB dependent receptor AMBLS11_14550 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_14565 PF00285 Citrate synthase, C-terminal domain AMBLS11_14570 PF00330 Aconitase family (aconitate hydratase) AMBLS11_14570 PF00694 Aconitase C-terminal domain AMBLS11_14575 PF04303 PrpF protein AMBLS11_14580 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_14585 PF00474 Sodium:solute symporter family AMBLS11_14600 PF00072 Response regulator receiver domain AMBLS11_14600 PF00989 PAS fold AMBLS11_14600 PF01627 Hpt domain AMBLS11_14600 PF18415 Histidine kinase receptor ArcB trans-membrane domain AMBLS11_14600 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_14600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_14605 PF01510 N-acetylmuramoyl-L-alanine amidase AMBLS11_14615 PF00310 Glutamine amidotransferases class-II AMBLS11_14615 PF01493 GXGXG motif AMBLS11_14615 PF01645 Conserved region in glutamate synthase AMBLS11_14615 PF04898 Glutamate synthase central domain AMBLS11_14620 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMBLS11_14620 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMBLS11_14635 PF01048 Phosphorylase superfamily AMBLS11_14640 PF03186 CobD/Cbib protein AMBLS11_14645 PF01497 Periplasmic binding protein AMBLS11_14665 PF01266 FAD dependent oxidoreductase AMBLS11_14670 PF07237 Protein of unknown function (DUF1428) AMBLS11_14690 PF00579 tRNA synthetases class I (W and Y) AMBLS11_14690 PF01479 S4 domain AMBLS11_14695 PF01551 Peptidase family M23 AMBLS11_14695 PF10145 Phage-related minor tail protein AMBLS11_14695 PF01464 Transglycosylase SLT domain AMBLS11_14700 PF03702 Anhydro-N-acetylmuramic acid kinase AMBLS11_14705 PF03600 Citrate transporter AMBLS11_14710 PF07690 Major Facilitator Superfamily AMBLS11_14720 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMBLS11_14730 PF01053 Cys/Met metabolism PLP-dependent enzyme AMBLS11_14735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMBLS11_14740 PF13417 Glutathione S-transferase, N-terminal domain AMBLS11_14740 PF00043 Glutathione S-transferase, C-terminal domain AMBLS11_14745 PF01521 Iron-sulphur cluster biosynthesis AMBLS11_14750 PF03976 Polyphosphate kinase 2 (PPK2) AMBLS11_14755 PF03776 Septum formation topological specificity factor MinE AMBLS11_14760 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMBLS11_14765 PF05209 Septum formation inhibitor MinC, N-terminal domain AMBLS11_14765 PF03775 Septum formation inhibitor MinC, C-terminal domain AMBLS11_14770 PF10415 Fumarase C C-terminus AMBLS11_14770 PF00206 Lyase AMBLS11_14780 PF00127 Copper binding proteins, plastocyanin/azurin family AMBLS11_14815 PF01566 Natural resistance-associated macrophage protein AMBLS11_14820 PF00155 Aminotransferase class I and II AMBLS11_14840 PF03951 Glutamine synthetase, beta-Grasp domain AMBLS11_14840 PF00120 Glutamine synthetase, catalytic domain AMBLS11_14850 PF00989 PAS fold AMBLS11_14850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_14850 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_14855 PF02954 Bacterial regulatory protein, Fis family AMBLS11_14855 PF00072 Response regulator receiver domain AMBLS11_14855 PF00158 Sigma-54 interaction domain AMBLS11_14860 PF00072 Response regulator receiver domain AMBLS11_14865 PF01553 Acyltransferase AMBLS11_14870 PF06877 Regulator of ribonuclease activity B AMBLS11_14885 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_14885 PF17158 Membrane-associated sensor, integral membrane domain AMBLS11_14905 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_14905 PF01627 Hpt domain AMBLS11_14905 PF00072 Response regulator receiver domain AMBLS11_14905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMBLS11_14905 PF00672 HAMP domain AMBLS11_14905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_14910 PF10458 Valyl tRNA synthetase tRNA binding arm AMBLS11_14910 PF00133 tRNA synthetases class I (I, L, M and V) AMBLS11_14910 PF08264 Anticodon-binding domain of tRNA AMBLS11_14915 PF04364 DNA polymerase III chi subunit, HolC AMBLS11_14920 PF02789 Cytosol aminopeptidase family, N-terminal domain AMBLS11_14920 PF00883 Cytosol aminopeptidase family, catalytic domain AMBLS11_14925 PF03739 Lipopolysaccharide export system permease LptF/LptG AMBLS11_14930 PF03739 Lipopolysaccharide export system permease LptF/LptG AMBLS11_14945 PF04542 Sigma-70 region 2 AMBLS11_14945 PF04545 Sigma-70, region 4 AMBLS11_14975 PF01638 HxlR-like helix-turn-helix AMBLS11_14990 PF02798 Glutathione S-transferase, N-terminal domain AMBLS11_14990 PF00043 Glutathione S-transferase, C-terminal domain AMBLS11_15000 PF00690 Cation transporter/ATPase, N-terminus AMBLS11_15000 PF00689 Cation transporting ATPase, C-terminus AMBLS11_15010 PF06165 Glycosyltransferase family 36 AMBLS11_15010 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AMBLS11_15010 PF10091 Putative glucoamylase AMBLS11_15025 PF01145 SPFH domain / Band 7 family AMBLS11_15030 PF17158 Membrane-associated sensor, integral membrane domain AMBLS11_15030 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_15050 PF03466 LysR substrate binding domain AMBLS11_15050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_15055 PF00580 UvrD/REP helicase N-terminal domain AMBLS11_15055 PF13361 UvrD-like helicase C-terminal domain AMBLS11_15060 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMBLS11_15060 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMBLS11_15065 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_15065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_15065 PF00072 Response regulator receiver domain AMBLS11_15065 PF01627 Hpt domain AMBLS11_15065 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMBLS11_15075 PF01594 AI-2E family transporter AMBLS11_15090 PF08240 Alcohol dehydrogenase GroES-like domain AMBLS11_15090 PF00107 Zinc-binding dehydrogenase AMBLS11_15095 PF13098 Thioredoxin-like domain AMBLS11_15100 PF00578 AhpC/TSA family AMBLS11_15105 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_15105 PF00072 Response regulator receiver domain AMBLS11_15110 PF08521 Two-component sensor kinase N-terminal AMBLS11_15110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_15110 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_15135 PF00892 EamA-like transporter family AMBLS11_15150 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_15150 PF00593 TonB dependent receptor AMBLS11_15160 PF02659 Putative manganese efflux pump AMBLS11_15170 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMBLS11_15170 PF00753 Metallo-beta-lactamase superfamily AMBLS11_15170 PF10996 Beta-Casp domain AMBLS11_15180 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMBLS11_15185 PF01321 Creatinase/Prolidase N-terminal domain AMBLS11_15185 PF00557 Metallopeptidase family M24 AMBLS11_15190 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMBLS11_15190 PF05221 S-adenosyl-L-homocysteine hydrolase AMBLS11_15195 PF08448 PAS fold AMBLS11_15195 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_15200 PF03547 Membrane transport protein AMBLS11_15205 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMBLS11_15205 PF13360 PQQ-like domain AMBLS11_15210 PF01011 PQQ enzyme repeat AMBLS11_15210 PF13360 PQQ-like domain AMBLS11_15230 PF00005 ABC transporter AMBLS11_15240 PF02789 Cytosol aminopeptidase family, N-terminal domain AMBLS11_15240 PF00883 Cytosol aminopeptidase family, catalytic domain AMBLS11_15245 PF12706 Beta-lactamase superfamily domain AMBLS11_15250 PF03070 TENA/THI-4/PQQC family AMBLS11_15255 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMBLS11_15260 PF04055 Radical SAM superfamily AMBLS11_15260 PF13186 Iron-sulfur cluster-binding domain AMBLS11_15285 PF00072 Response regulator receiver domain AMBLS11_15285 PF00196 Bacterial regulatory proteins, luxR family AMBLS11_15290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_15290 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_15300 PF04205 FMN-binding domain AMBLS11_15300 PF12801 4Fe-4S binding domain AMBLS11_15305 PF00171 Aldehyde dehydrogenase family AMBLS11_15310 PF00072 Response regulator receiver domain AMBLS11_15310 PF00196 Bacterial regulatory proteins, luxR family AMBLS11_15315 PF05231 MASE1 AMBLS11_15315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_15315 PF07730 Histidine kinase AMBLS11_15320 PF08447 PAS fold AMBLS11_15320 PF13426 PAS domain AMBLS11_15320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_15330 PF00171 Aldehyde dehydrogenase family AMBLS11_15335 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMBLS11_15335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMBLS11_15355 PF02028 BCCT, betaine/carnitine/choline family transporter AMBLS11_15360 PF01070 FMN-dependent dehydrogenase AMBLS11_15365 PF09330 D-lactate dehydrogenase, membrane binding AMBLS11_15365 PF01565 FAD binding domain AMBLS11_15370 PF00196 Bacterial regulatory proteins, luxR family AMBLS11_15375 PF03783 Curli production assembly/transport component CsgG AMBLS11_15400 PF00082 Subtilase family AMBLS11_15405 PF00196 Bacterial regulatory proteins, luxR family AMBLS11_15405 PF00072 Response regulator receiver domain AMBLS11_15410 PF07730 Histidine kinase AMBLS11_15410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_15420 PF00271 Helicase conserved C-terminal domain AMBLS11_15420 PF00270 DEAD/DEAH box helicase AMBLS11_15425 PF12795 Mechanosensitive ion channel porin domain AMBLS11_15425 PF00924 Mechanosensitive ion channel AMBLS11_15425 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMBLS11_15435 PF00141 Peroxidase AMBLS11_15445 PF00563 EAL domain AMBLS11_15445 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_15445 PF13426 PAS domain AMBLS11_15460 PF03466 LysR substrate binding domain AMBLS11_15460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_15470 PF01925 Sulfite exporter TauE/SafE AMBLS11_15480 PF00072 Response regulator receiver domain AMBLS11_15480 PF08769 Sporulation initiation factor Spo0A C terminal AMBLS11_15490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_15490 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_15500 PF00136 DNA polymerase family B AMBLS11_15500 PF03104 DNA polymerase family B, exonuclease domain AMBLS11_15510 PF13193 AMP-binding enzyme C-terminal domain AMBLS11_15510 PF00501 AMP-binding enzyme AMBLS11_15525 PF05958 tRNA (Uracil-5-)-methyltransferase AMBLS11_15530 PF00440 Bacterial regulatory proteins, tetR family AMBLS11_15540 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMBLS11_15540 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMBLS11_15550 PF03167 Uracil DNA glycosylase superfamily AMBLS11_15555 PF00563 EAL domain AMBLS11_15555 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_15555 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_15565 PF01507 Phosphoadenosine phosphosulfate reductase family AMBLS11_15570 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMBLS11_15570 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMBLS11_15575 PF00175 Oxidoreductase NAD-binding domain AMBLS11_15575 PF00258 Flavodoxin AMBLS11_15575 PF00667 FAD binding domain AMBLS11_15595 PF04024 PspC domain AMBLS11_15600 PF04012 PspA/IM30 family AMBLS11_15610 PF01207 Dihydrouridine synthase (Dus) AMBLS11_15630 PF01389 OmpA-like transmembrane domain AMBLS11_15630 PF00691 OmpA family AMBLS11_15635 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMBLS11_15635 PF05362 Lon protease (S16) C-terminal proteolytic domain AMBLS11_15635 PF00004 ATPase family associated with various cellular activities (AAA) AMBLS11_15640 PF03707 Bacterial signalling protein N terminal repeat AMBLS11_15640 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_15640 PF00563 EAL domain AMBLS11_15645 PF00756 Putative esterase AMBLS11_15650 PF01553 Acyltransferase AMBLS11_15655 PF01553 Acyltransferase AMBLS11_15660 PF00924 Mechanosensitive ion channel AMBLS11_15675 PF01370 NAD dependent epimerase/dehydratase family AMBLS11_15680 PF00209 Sodium:neurotransmitter symporter family AMBLS11_15695 PF01625 Peptide methionine sulfoxide reductase AMBLS11_15710 PF00258 Flavodoxin AMBLS11_15720 PF02472 Biopolymer transport protein ExbD/TolR AMBLS11_15735 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AMBLS11_15740 PF01270 Glycosyl hydrolases family 8 AMBLS11_15750 PF03170 Bacterial cellulose synthase subunit AMBLS11_15750 PF03552 Cellulose synthase AMBLS11_15750 PF00535 Glycosyl transferase family 2 AMBLS11_15750 PF07238 PilZ domain AMBLS11_15765 PF05175 Methyltransferase small domain AMBLS11_15770 PF13460 NAD(P)H-binding AMBLS11_15775 PF00326 Prolyl oligopeptidase family AMBLS11_15775 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMBLS11_15785 PF08000 Bacterial PH domain AMBLS11_15790 PF08448 PAS fold AMBLS11_15790 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_15790 PF00563 EAL domain AMBLS11_15795 PF00291 Pyridoxal-phosphate dependent enzyme AMBLS11_15800 PF07969 Amidohydrolase family AMBLS11_15810 PF00753 Metallo-beta-lactamase superfamily AMBLS11_15820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_15820 PF03466 LysR substrate binding domain AMBLS11_15825 PF13230 Glutamine amidotransferases class-II AMBLS11_15840 PF05360 yiaA/B two helix domain AMBLS11_15870 PF09905 DNA-binding protein VF530 AMBLS11_15875 PF02447 GntP family permease AMBLS11_15885 PF00356 Bacterial regulatory proteins, lacI family AMBLS11_15890 PF00753 Metallo-beta-lactamase superfamily AMBLS11_15900 PF00817 impB/mucB/samB family AMBLS11_15900 PF11798 IMS family HHH motif AMBLS11_15900 PF11799 impB/mucB/samB family C-terminal domain AMBLS11_15915 PF02424 ApbE family AMBLS11_15920 PF00970 Oxidoreductase FAD-binding domain AMBLS11_15920 PF00175 Oxidoreductase NAD-binding domain AMBLS11_15920 PF00111 2Fe-2S iron-sulfur cluster binding domain AMBLS11_15925 PF02508 Rnf-Nqr subunit, membrane protein AMBLS11_15930 PF02508 Rnf-Nqr subunit, membrane protein AMBLS11_15935 PF04205 FMN-binding domain AMBLS11_15940 PF03116 NQR2, RnfD, RnfE family AMBLS11_15945 PF11973 NQRA C-terminal domain AMBLS11_15945 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AMBLS11_15950 PF07055 Enoyl reductase FAD binding domain AMBLS11_15950 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AMBLS11_15950 PF12241 Trans-2-enoyl-CoA reductase catalytic region AMBLS11_15955 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMBLS11_15955 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMBLS11_15960 PF00311 Phosphoenolpyruvate carboxylase AMBLS11_15970 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMBLS11_15970 PF00056 lactate/malate dehydrogenase, NAD binding domain AMBLS11_15975 PF01316 Arginine repressor, DNA binding domain AMBLS11_15975 PF02863 Arginine repressor, C-terminal domain AMBLS11_15985 PF00593 TonB dependent receptor AMBLS11_16000 PF00485 Phosphoribulokinase / Uridine kinase family AMBLS11_16005 PF07662 Na+ dependent nucleoside transporter C-terminus AMBLS11_16005 PF01773 Na+ dependent nucleoside transporter N-terminus AMBLS11_16005 PF07670 Nucleoside recognition AMBLS11_16020 PF02469 Fasciclin domain AMBLS11_16030 PF00072 Response regulator receiver domain AMBLS11_16030 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_16040 PF00571 CBS domain AMBLS11_16040 PF00478 IMP dehydrogenase / GMP reductase domain AMBLS11_16045 PF00474 Sodium:solute symporter family AMBLS11_16055 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_16055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_16055 PF18415 Histidine kinase receptor ArcB trans-membrane domain AMBLS11_16065 PF18030 RimK PreATP-grasp domain AMBLS11_16065 PF08443 RimK-like ATP-grasp domain AMBLS11_16075 PF18030 RimK PreATP-grasp domain AMBLS11_16075 PF08443 RimK-like ATP-grasp domain AMBLS11_16085 PF00072 Response regulator receiver domain AMBLS11_16085 PF00196 Bacterial regulatory proteins, luxR family AMBLS11_16100 PF00248 Aldo/keto reductase family AMBLS11_16110 PF00082 Subtilase family AMBLS11_16125 PF00069 Protein kinase domain AMBLS11_16130 PF07730 Histidine kinase AMBLS11_16130 PF17200 Single Cache domain 2 AMBLS11_16135 PF00196 Bacterial regulatory proteins, luxR family AMBLS11_16135 PF00072 Response regulator receiver domain AMBLS11_16140 PF00082 Subtilase family AMBLS11_16155 PF00199 Catalase AMBLS11_16155 PF06628 Catalase-related immune-responsive AMBLS11_16165 PF03143 Elongation factor Tu C-terminal domain AMBLS11_16165 PF00009 Elongation factor Tu GTP binding domain AMBLS11_16165 PF03144 Elongation factor Tu domain 2 AMBLS11_16170 PF03309 Type III pantothenate kinase AMBLS11_16175 PF03099 Biotin/lipoate A/B protein ligase family AMBLS11_16175 PF02237 Biotin protein ligase C terminal domain AMBLS11_16175 PF08279 HTH domain AMBLS11_16180 PF01565 FAD binding domain AMBLS11_16180 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMBLS11_16185 PF12729 Four helix bundle sensory module for signal transduction AMBLS11_16185 PF00672 HAMP domain AMBLS11_16185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_16210 PF00005 ABC transporter AMBLS11_16210 PF00664 ABC transporter transmembrane region AMBLS11_16210 PF03412 Peptidase C39 family AMBLS11_16215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_16215 PF03466 LysR substrate binding domain AMBLS11_16225 PF00483 Nucleotidyl transferase AMBLS11_16225 PF01050 Mannose-6-phosphate isomerase AMBLS11_16230 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMBLS11_16230 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMBLS11_16230 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMBLS11_16235 PF00535 Glycosyl transferase family 2 AMBLS11_16240 PF16363 GDP-mannose 4,6 dehydratase AMBLS11_16245 PF04321 RmlD substrate binding domain AMBLS11_16250 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMBLS11_16255 PF00483 Nucleotidyl transferase AMBLS11_16260 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMBLS11_16260 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMBLS11_16260 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMBLS11_16260 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMBLS11_16275 PF00535 Glycosyl transferase family 2 AMBLS11_16280 PF00535 Glycosyl transferase family 2 AMBLS11_16290 PF00535 Glycosyl transferase family 2 AMBLS11_16300 PF00132 Bacterial transferase hexapeptide (six repeats) AMBLS11_16310 PF00535 Glycosyl transferase family 2 AMBLS11_16325 PF00700 Bacterial flagellin C-terminal helical region AMBLS11_16325 PF07196 Flagellin hook IN motif AMBLS11_16325 PF00669 Bacterial flagellin N-terminal helical region AMBLS11_16335 PF01196 Ribosomal protein L17 AMBLS11_16340 PF01000 RNA polymerase Rpb3/RpoA insert domain AMBLS11_16340 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMBLS11_16340 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMBLS11_16345 PF01479 S4 domain AMBLS11_16345 PF00163 Ribosomal protein S4/S9 N-terminal domain AMBLS11_16350 PF00411 Ribosomal protein S11 AMBLS11_16355 PF00416 Ribosomal protein S13/S18 AMBLS11_16360 PF00444 Ribosomal protein L36 AMBLS11_16365 PF00344 SecY translocase AMBLS11_16370 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMBLS11_16375 PF00327 Ribosomal protein L30p/L7e AMBLS11_16380 PF00333 Ribosomal protein S5, N-terminal domain AMBLS11_16380 PF03719 Ribosomal protein S5, C-terminal domain AMBLS11_16385 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMBLS11_16390 PF00347 Ribosomal protein L6 AMBLS11_16395 PF00410 Ribosomal protein S8 AMBLS11_16400 PF00253 Ribosomal protein S14p/S29e AMBLS11_16405 PF00281 Ribosomal protein L5 AMBLS11_16405 PF00673 ribosomal L5P family C-terminus AMBLS11_16410 PF00467 KOW motif AMBLS11_16410 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMBLS11_16415 PF00238 Ribosomal protein L14p/L23e AMBLS11_16420 PF09308 LuxQ, periplasmic AMBLS11_16420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_16420 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_16420 PF00072 Response regulator receiver domain AMBLS11_16435 PF13333 Integrase core domain AMBLS11_16435 PF00665 Integrase core domain AMBLS11_16435 PF13276 HTH-like domain AMBLS11_16445 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMBLS11_16445 PF00588 SpoU rRNA Methylase family AMBLS11_16450 PF00575 S1 RNA binding domain AMBLS11_16450 PF17876 Cold shock domain AMBLS11_16450 PF00773 RNB domain AMBLS11_16450 PF08461 Ribonuclease R winged-helix domain AMBLS11_16450 PF08206 Ribonuclease B OB domain AMBLS11_16455 PF09423 PhoD-like phosphatase AMBLS11_16455 PF16655 PhoD-like phosphatase, N-terminal domain AMBLS11_16470 PF00593 TonB dependent receptor AMBLS11_16470 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_16485 PF08238 Sel1 repeat AMBLS11_16500 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AMBLS11_16505 PF00175 Oxidoreductase NAD-binding domain AMBLS11_16515 PF04389 Peptidase family M28 AMBLS11_16525 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_16525 PF01590 GAF domain AMBLS11_16525 PF08446 PAS fold AMBLS11_16525 PF00360 Phytochrome region AMBLS11_16525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_16535 PF01654 Cytochrome bd terminal oxidase subunit I AMBLS11_16540 PF02322 Cytochrome bd terminal oxidase subunit II AMBLS11_16550 PF13404 AsnC-type helix-turn-helix domain AMBLS11_16550 PF01037 Lrp/AsnC ligand binding domain AMBLS11_16560 PF00313 'Cold-shock' DNA-binding domain AMBLS11_16565 PF03109 ABC1 family AMBLS11_16575 PF01209 ubiE/COQ5 methyltransferase family AMBLS11_16585 PF01432 Peptidase family M3 AMBLS11_16590 PF00072 Response regulator receiver domain AMBLS11_16600 PF08448 PAS fold AMBLS11_16600 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_16600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_16600 PF13188 PAS domain AMBLS11_16600 PF00072 Response regulator receiver domain AMBLS11_16605 PF00158 Sigma-54 interaction domain AMBLS11_16605 PF00072 Response regulator receiver domain AMBLS11_16605 PF02954 Bacterial regulatory protein, Fis family AMBLS11_16610 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMBLS11_16610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMBLS11_16615 PF00384 Molybdopterin oxidoreductase AMBLS11_16615 PF01568 Molydopterin dinucleotide binding domain AMBLS11_16615 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMBLS11_16620 PF00593 TonB dependent receptor AMBLS11_16620 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_16630 PF00326 Prolyl oligopeptidase family AMBLS11_16630 PF07676 WD40-like Beta Propeller Repeat AMBLS11_16645 PF00664 ABC transporter transmembrane region AMBLS11_16645 PF03412 Peptidase C39 family AMBLS11_16645 PF00005 ABC transporter AMBLS11_16650 PF00196 Bacterial regulatory proteins, luxR family AMBLS11_16650 PF00072 Response regulator receiver domain AMBLS11_16670 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system AMBLS11_16675 PF00004 ATPase family associated with various cellular activities (AAA) AMBLS11_16675 PF07724 AAA domain (Cdc48 subfamily) AMBLS11_16680 PF00227 Proteasome subunit AMBLS11_16690 PF05036 Sporulation related domain AMBLS11_16695 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMBLS11_16695 PF00270 DEAD/DEAH box helicase AMBLS11_16695 PF18074 Primosomal protein N C-terminal domain AMBLS11_16695 PF17764 3′ DNA-binding domain (3′BD) AMBLS11_16695 PF00271 Helicase conserved C-terminal domain AMBLS11_16700 PF01197 Ribosomal protein L31 AMBLS11_16715 PF00390 Malic enzyme, N-terminal domain AMBLS11_16715 PF03949 Malic enzyme, NAD binding domain AMBLS11_16720 PF01340 Met Apo-repressor, MetJ AMBLS11_16725 PF02219 Methylenetetrahydrofolate reductase AMBLS11_16730 PF03631 Virulence factor BrkB AMBLS11_16745 PF00561 alpha/beta hydrolase fold AMBLS11_16750 PF02580 D-Tyr-tRNA(Tyr) deacylase AMBLS11_16755 PF09500 Putative thioesterase (yiiD_Cterm) AMBLS11_16755 PF00583 Acetyltransferase (GNAT) family AMBLS11_16760 PF04545 Sigma-70, region 4 AMBLS11_16760 PF04542 Sigma-70 region 2 AMBLS11_16760 PF00140 Sigma-70 factor, region 1.2 AMBLS11_16765 PF08668 HDOD domain AMBLS11_16765 PF00563 EAL domain AMBLS11_16770 PF08668 HDOD domain AMBLS11_16770 PF00563 EAL domain AMBLS11_16775 PF18075 FtsX extracellular domain AMBLS11_16780 PF00005 ABC transporter AMBLS11_16785 PF00448 SRP54-type protein, GTPase domain AMBLS11_16785 PF02881 SRP54-type protein, helical bundle domain AMBLS11_16800 PF01914 MarC family integral membrane protein AMBLS11_16810 PF12404 Peptidase AMBLS11_16810 PF00883 Cytosol aminopeptidase family, catalytic domain AMBLS11_16815 PF17746 SfsA N-terminal OB domain AMBLS11_16815 PF03749 Sugar fermentation stimulation protein RE domain AMBLS11_16820 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMBLS11_16825 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMBLS11_16830 PF12626 Polymerase A arginine-rich C-terminus AMBLS11_16830 PF12627 Probable RNA and SrmB- binding site of polymerase A AMBLS11_16830 PF01743 Poly A polymerase head domain AMBLS11_16835 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMBLS11_16840 PF02548 Ketopantoate hydroxymethyltransferase AMBLS11_16845 PF02569 Pantoate-beta-alanine ligase AMBLS11_16850 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMBLS11_16865 PF01061 ABC-2 type transporter AMBLS11_16870 PF00005 ABC transporter AMBLS11_16875 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_16875 PF00072 Response regulator receiver domain AMBLS11_16880 PF00672 HAMP domain AMBLS11_16880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_16880 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_16890 PF00571 CBS domain AMBLS11_16890 PF01595 Cyclin M transmembrane N-terminal domain AMBLS11_16895 PF03773 Predicted permease AMBLS11_16900 PF13722 5TM C-terminal transporter carbon starvation CstA AMBLS11_16900 PF02554 Carbon starvation protein CstA AMBLS11_16905 PF00667 FAD binding domain AMBLS11_16905 PF00258 Flavodoxin AMBLS11_16905 PF00175 Oxidoreductase NAD-binding domain AMBLS11_16950 PF02472 Biopolymer transport protein ExbD/TolR AMBLS11_16960 PF01618 MotA/TolQ/ExbB proton channel family AMBLS11_16970 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_16970 PF00593 TonB dependent receptor AMBLS11_16975 PF01070 FMN-dependent dehydrogenase AMBLS11_16980 PF18331 PKHD-type hydroxylase C-terminal domain AMBLS11_16980 PF13640 2OG-Fe(II) oxygenase superfamily AMBLS11_16985 PF00593 TonB dependent receptor AMBLS11_16985 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_17010 PF00009 Elongation factor Tu GTP binding domain AMBLS11_17010 PF03144 Elongation factor Tu domain 2 AMBLS11_17010 PF14492 Elongation Factor G, domain II AMBLS11_17010 PF03764 Elongation factor G, domain IV AMBLS11_17010 PF00679 Elongation factor G C-terminus AMBLS11_17015 PF00177 Ribosomal protein S7p/S5e AMBLS11_17020 PF00164 Ribosomal protein S12/S23 AMBLS11_17025 PF04997 RNA polymerase Rpb1, domain 1 AMBLS11_17025 PF00623 RNA polymerase Rpb1, domain 2 AMBLS11_17025 PF04983 RNA polymerase Rpb1, domain 3 AMBLS11_17025 PF05000 RNA polymerase Rpb1, domain 4 AMBLS11_17025 PF04998 RNA polymerase Rpb1, domain 5 AMBLS11_17030 PF04563 RNA polymerase beta subunit AMBLS11_17030 PF04560 RNA polymerase Rpb2, domain 7 AMBLS11_17030 PF04561 RNA polymerase Rpb2, domain 2 AMBLS11_17030 PF04565 RNA polymerase Rpb2, domain 3 AMBLS11_17030 PF10385 RNA polymerase beta subunit external 1 domain AMBLS11_17030 PF00562 RNA polymerase Rpb2, domain 6 AMBLS11_17040 PF00466 Ribosomal protein L10 AMBLS11_17045 PF00687 Ribosomal protein L1p/L10e family AMBLS11_17050 PF00298 Ribosomal protein L11, RNA binding domain AMBLS11_17050 PF03946 Ribosomal protein L11, N-terminal domain AMBLS11_17055 PF00467 KOW motif AMBLS11_17055 PF02357 Transcription termination factor nusG AMBLS11_17060 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMBLS11_17065 PF00664 ABC transporter transmembrane region AMBLS11_17065 PF00005 ABC transporter AMBLS11_17070 PF03737 Aldolase/RraA AMBLS11_17075 PF05649 Peptidase family M13 AMBLS11_17075 PF01431 Peptidase family M13 AMBLS11_17090 PF00271 Helicase conserved C-terminal domain AMBLS11_17090 PF00270 DEAD/DEAH box helicase AMBLS11_17090 PF03880 DbpA RNA binding domain AMBLS11_17100 PF01979 Amidohydrolase family AMBLS11_17105 PF08212 Lipocalin-like domain AMBLS11_17110 PF00248 Aldo/keto reductase family AMBLS11_17115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMBLS11_17120 PF05552 Conserved TM helix AMBLS11_17120 PF00924 Mechanosensitive ion channel AMBLS11_17125 PF07690 Major Facilitator Superfamily AMBLS11_17130 PF00128 Alpha amylase, catalytic domain AMBLS11_17140 PF01227 GTP cyclohydrolase I AMBLS11_17150 PF04371 Porphyromonas-type peptidyl-arginine deiminase AMBLS11_17155 PF00795 Carbon-nitrogen hydrolase AMBLS11_17165 PF08494 DEAD/H associated AMBLS11_17165 PF00270 DEAD/DEAH box helicase AMBLS11_17165 PF00271 Helicase conserved C-terminal domain AMBLS11_17190 PF04675 DNA ligase N terminus AMBLS11_17190 PF01068 ATP dependent DNA ligase domain AMBLS11_17190 PF04679 ATP dependent DNA ligase C terminal region AMBLS11_17195 PF01132 Elongation factor P (EF-P) OB domain AMBLS11_17195 PF09285 Elongation factor P, C-terminal AMBLS11_17195 PF08207 Elongation factor P (EF-P) KOW-like domain AMBLS11_17200 PF00294 pfkB family carbohydrate kinase AMBLS11_17210 PF00326 Prolyl oligopeptidase family AMBLS11_17215 PF02798 Glutathione S-transferase, N-terminal domain AMBLS11_17215 PF00043 Glutathione S-transferase, C-terminal domain AMBLS11_17220 PF02798 Glutathione S-transferase, N-terminal domain AMBLS11_17230 PF00561 alpha/beta hydrolase fold AMBLS11_17245 PF00171 Aldehyde dehydrogenase family AMBLS11_17250 PF00205 Thiamine pyrophosphate enzyme, central domain AMBLS11_17250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMBLS11_17250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMBLS11_17260 PF00762 Ferrochelatase AMBLS11_17275 PF01145 SPFH domain / Band 7 family AMBLS11_17280 PF12221 Bacterial membrane protein N terminal AMBLS11_17280 PF01145 SPFH domain / Band 7 family AMBLS11_17285 PF13167 GTP-binding GTPase N-terminal AMBLS11_17285 PF01926 50S ribosome-binding GTPase AMBLS11_17285 PF16360 GTP-binding GTPase Middle Region AMBLS11_17290 PF17209 Hfq protein AMBLS11_17300 PF08676 MutL C terminal dimerisation domain AMBLS11_17300 PF01119 DNA mismatch repair protein, C-terminal domain AMBLS11_17305 PF01119 DNA mismatch repair protein, C-terminal domain AMBLS11_17305 PF08676 MutL C terminal dimerisation domain AMBLS11_17310 PF01520 N-acetylmuramoyl-L-alanine amidase AMBLS11_17315 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMBLS11_17320 PF01256 Carbohydrate kinase AMBLS11_17320 PF03853 YjeF-related protein N-terminus AMBLS11_17325 PF08331 Domain of unknown function (DUF1730) AMBLS11_17335 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMBLS11_17340 PF09297 NADH pyrophosphatase zinc ribbon domain AMBLS11_17340 PF00293 NUDIX domain AMBLS11_17345 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AMBLS11_17350 PF01475 Ferric uptake regulator family AMBLS11_17360 PF01894 Uncharacterised protein family UPF0047 AMBLS11_17365 PF00691 OmpA family AMBLS11_17365 PF05736 OprF membrane domain AMBLS11_17370 PF13333 Integrase core domain AMBLS11_17370 PF00665 Integrase core domain AMBLS11_17370 PF13276 HTH-like domain AMBLS11_17380 PF03796 DnaB-like helicase C terminal domain AMBLS11_17380 PF00772 DnaB-like helicase N terminal domain AMBLS11_17405 PF03475 3-alpha domain AMBLS11_17405 PF03473 MOSC domain AMBLS11_17420 PF00873 AcrB/AcrD/AcrF family AMBLS11_17425 PF03948 Ribosomal protein L9, C-terminal domain AMBLS11_17425 PF01281 Ribosomal protein L9, N-terminal domain AMBLS11_17430 PF01084 Ribosomal protein S18 AMBLS11_17435 PF01250 Ribosomal protein S6 AMBLS11_17440 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_17440 PF00672 HAMP domain AMBLS11_17440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_17450 PF00005 ABC transporter AMBLS11_17460 PF08447 PAS fold AMBLS11_17460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_17465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_17465 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_17465 PF13426 PAS domain AMBLS11_17465 PF00989 PAS fold AMBLS11_17465 PF13188 PAS domain AMBLS11_17470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMBLS11_17470 PF00672 HAMP domain AMBLS11_17470 PF02743 Cache domain AMBLS11_17475 PF03601 Conserved hypothetical protein 698 AMBLS11_17480 PF16916 Dimerisation domain of Zinc Transporter AMBLS11_17480 PF01545 Cation efflux family AMBLS11_17485 PF00722 Glycosyl hydrolases family 16 AMBLS11_17500 PF03783 Curli production assembly/transport component CsgG AMBLS11_17510 PF05643 Putative bacterial lipoprotein (DUF799) AMBLS11_17515 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMBLS11_17515 PF14310 Fibronectin type III-like domain AMBLS11_17515 PF00933 Glycosyl hydrolase family 3 N terminal domain AMBLS11_17520 PF07690 Major Facilitator Superfamily AMBLS11_17525 PF00232 Glycosyl hydrolase family 1 AMBLS11_17530 PF00356 Bacterial regulatory proteins, lacI family AMBLS11_17535 PF00083 Sugar (and other) transporter AMBLS11_17540 PF00005 ABC transporter AMBLS11_17540 PF00664 ABC transporter transmembrane region AMBLS11_17545 PF00005 ABC transporter AMBLS11_17545 PF00664 ABC transporter transmembrane region AMBLS11_17550 PF08173 Membrane bound YbgT-like protein AMBLS11_17555 PF02322 Cytochrome bd terminal oxidase subunit II AMBLS11_17560 PF01654 Cytochrome bd terminal oxidase subunit I AMBLS11_17570 PF00158 Sigma-54 interaction domain AMBLS11_17570 PF00072 Response regulator receiver domain AMBLS11_17570 PF02954 Bacterial regulatory protein, Fis family AMBLS11_17595 PF13474 SnoaL-like domain AMBLS11_17600 PF02649 Type I GTP cyclohydrolase folE2 AMBLS11_17645 PF05532 CsbD-like AMBLS11_17660 PF04542 Sigma-70 region 2 AMBLS11_17660 PF08281 Sigma-70, region 4 AMBLS11_17685 PF00472 RF-1 domain AMBLS11_17690 PF00364 Biotin-requiring enzyme AMBLS11_17690 PF00561 alpha/beta hydrolase fold AMBLS11_17715 PF04264 YceI-like domain AMBLS11_17720 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMBLS11_17725 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_17725 PF00593 TonB dependent receptor AMBLS11_17735 PF01048 Phosphorylase superfamily AMBLS11_17740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_17740 PF03466 LysR substrate binding domain AMBLS11_17745 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMBLS11_17750 PF16884 N-terminal domain of oxidoreductase AMBLS11_17750 PF00107 Zinc-binding dehydrogenase AMBLS11_17755 PF00563 EAL domain AMBLS11_17755 PF00360 Phytochrome region AMBLS11_17755 PF01590 GAF domain AMBLS11_17755 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_17760 PF00072 Response regulator receiver domain AMBLS11_17760 PF09308 LuxQ, periplasmic AMBLS11_17760 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_17760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_17770 PF00296 Luciferase-like monooxygenase AMBLS11_17775 PF01380 SIS domain AMBLS11_17780 PF08220 DeoR-like helix-turn-helix domain AMBLS11_17780 PF00455 DeoR C terminal sensor domain AMBLS11_17785 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMBLS11_17785 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMBLS11_17790 PF14602 Hexapeptide repeat of succinyl-transferase AMBLS11_17790 PF12804 MobA-like NTP transferase domain AMBLS11_17790 PF00132 Bacterial transferase hexapeptide (six repeats) AMBLS11_17795 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_17800 PF00892 EamA-like transporter family AMBLS11_17805 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMBLS11_17805 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMBLS11_17810 PF00730 HhH-GPD superfamily base excision DNA repair protein AMBLS11_17810 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain AMBLS11_17815 PF00144 Beta-lactamase AMBLS11_17820 PF17944 Arginine decarboxylase C-terminal helical extension AMBLS11_17820 PF17810 Arginine decarboxylase helical bundle domain AMBLS11_17820 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMBLS11_17830 PF02233 NAD(P) transhydrogenase beta subunit AMBLS11_17835 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMBLS11_17840 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMBLS11_17840 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMBLS11_17880 PF00593 TonB dependent receptor AMBLS11_17880 PF07715 TonB-dependent Receptor Plug Domain AMBLS11_17920 PF01040 UbiA prenyltransferase family AMBLS11_17925 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AMBLS11_17930 PF00510 Cytochrome c oxidase subunit III AMBLS11_17935 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMBLS11_17940 PF06481 COX Aromatic Rich Motif AMBLS11_17940 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMBLS11_17965 PF00544 Pectate lyase AMBLS11_17975 PF13276 HTH-like domain AMBLS11_17975 PF00665 Integrase core domain AMBLS11_17975 PF13333 Integrase core domain AMBLS11_18020 PF02796 Helix-turn-helix domain of resolvase AMBLS11_18020 PF00239 Resolvase, N terminal domain AMBLS11_18040 PF00118 TCP-1/cpn60 chaperonin family AMBLS11_18045 PF00166 Chaperonin 10 Kd subunit AMBLS11_18055 PF03091 CutA1 divalent ion tolerance protein AMBLS11_18060 PF11412 Disulphide bond corrector protein DsbC AMBLS11_18060 PF02683 Cytochrome C biogenesis protein transmembrane region AMBLS11_18065 PF01551 Peptidase family M23 AMBLS11_18070 PF01220 Dehydroquinase class II AMBLS11_18075 PF00364 Biotin-requiring enzyme AMBLS11_18080 PF00289 Biotin carboxylase, N-terminal domain AMBLS11_18080 PF02785 Biotin carboxylase C-terminal domain AMBLS11_18080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMBLS11_18105 PF02811 PHP domain AMBLS11_18105 PF14579 Helix-hairpin-helix motif AMBLS11_18105 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMBLS11_18105 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMBLS11_18105 PF11490 DNA polymerase III polC-type N-terminus II AMBLS11_18105 PF00929 Exonuclease AMBLS11_18125 PF01355 High potential iron-sulfur protein AMBLS11_18130 PF01425 Amidase AMBLS11_18145 PF01207 Dihydrouridine synthase (Dus) AMBLS11_18150 PF02954 Bacterial regulatory protein, Fis family AMBLS11_18155 PF01808 AICARFT/IMPCHase bienzyme AMBLS11_18155 PF02142 MGS-like domain AMBLS11_18165 PF02843 Phosphoribosylglycinamide synthetase, C domain AMBLS11_18165 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMBLS11_18165 PF02844 Phosphoribosylglycinamide synthetase, N domain AMBLS11_18175 PF00027 Cyclic nucleotide-binding domain AMBLS11_18175 PF00520 Ion transport protein AMBLS11_18180 PF00485 Phosphoribulokinase / Uridine kinase family AMBLS11_18190 PF00486 Transcriptional regulatory protein, C terminal AMBLS11_18190 PF00072 Response regulator receiver domain AMBLS11_18195 PF00512 His Kinase A (phospho-acceptor) domain AMBLS11_18195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMBLS11_18195 PF00672 HAMP domain AMBLS11_18205 PF16338 Domain of unknown function (DUF4968) AMBLS11_18205 PF17137 Domain of unknown function (DUF5110) AMBLS11_18205 PF13802 Galactose mutarotase-like AMBLS11_18205 PF01055 Glycosyl hydrolases family 31 AMBLS11_18215 PF01430 Hsp33 protein AMBLS11_18220 PF01479 S4 domain AMBLS11_18225 PF11356 Type II secretion system protein C AMBLS11_18230 PF03958 Bacterial type II/III secretion system short domain AMBLS11_18230 PF00263 Bacterial type II and III secretion system protein AMBLS11_18235 PF00437 Type II/IV secretion system protein AMBLS11_18240 PF00482 Type II secretion system (T2SS), protein F AMBLS11_18245 PF08334 Type II secretion system (T2SS), protein G AMBLS11_18245 PF07963 Prokaryotic N-terminal methylation motif AMBLS11_18250 PF12019 Type II transport protein GspH AMBLS11_18250 PF07963 Prokaryotic N-terminal methylation motif AMBLS11_18255 PF07963 Prokaryotic N-terminal methylation motif AMBLS11_18255 PF02501 Type II secretion system (T2SS), protein I AMBLS11_18260 PF11612 Type II secretion system (T2SS), protein J AMBLS11_18260 PF07963 Prokaryotic N-terminal methylation motif AMBLS11_18270 PF05134 Type II secretion system (T2SS), protein L AMBLS11_18270 PF12693 GspL periplasmic domain AMBLS11_18275 PF04612 Type II secretion system (T2SS), protein M AMBLS11_18295 PF00171 Aldehyde dehydrogenase family AMBLS11_18300 PF01931 Protein of unknown function DUF84 AMBLS11_18305 PF13419 Haloacid dehalogenase-like hydrolase AMBLS11_18310 PF00293 NUDIX domain AMBLS11_18315 PF00459 Inositol monophosphatase family AMBLS11_18330 PF04349 Periplasmic glucan biosynthesis protein, MdoG AMBLS11_18340 PF06794 Uncharacterised protein family (UPF0270) AMBLS11_18345 PF00561 alpha/beta hydrolase fold AMBLS11_18355 PF00005 ABC transporter AMBLS11_18355 PF12848 ABC transporter AMBLS11_18375 PF04102 SlyX AMBLS11_18385 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMBLS11_18385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMBLS11_18395 PF01272 Transcription elongation factor, GreA/GreB, C-term AMBLS11_18395 PF03449 Transcription elongation factor, N-terminal AMBLS11_18400 PF17674 HHH domain AMBLS11_18400 PF00575 S1 RNA binding domain AMBLS11_18400 PF16921 Tex protein YqgF-like domain AMBLS11_18400 PF09371 Tex-like protein N-terminal domain AMBLS11_18405 PF04820 Tryptophan halogenase AMBLS11_18425 PF12833 Helix-turn-helix domain AMBLS11_18435 PF04616 Glycosyl hydrolases family 43 AMBLS11_18460 PF00331 Glycosyl hydrolase family 10 AMBLS11_18460 PF03422 Carbohydrate binding module (family 6) AMBLS11_18460 PF00553 Cellulose binding domain AMBLS11_18465 PF00248 Aldo/keto reductase family AMBLS11_18470 PF02780 Transketolase, C-terminal domain AMBLS11_18470 PF00456 Transketolase, thiamine diphosphate binding domain AMBLS11_18470 PF02779 Transketolase, pyrimidine binding domain AMBLS11_18480 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMBLS11_18480 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMBLS11_18485 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMBLS11_18495 PF14310 Fibronectin type III-like domain AMBLS11_18495 PF00933 Glycosyl hydrolase family 3 N terminal domain AMBLS11_18495 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMBLS11_18500 PF00083 Sugar (and other) transporter AMBLS11_18520 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AMBLS11_18540 PF00561 alpha/beta hydrolase fold AMBLS11_18545 PF00156 Phosphoribosyl transferase domain AMBLS11_18555 PF01521 Iron-sulphur cluster biosynthesis AMBLS11_18555 PF01106 NifU-like domain AMBLS11_18565 PF01177 Asp/Glu/Hydantoin racemase AMBLS11_18580 PF01554 MatE AMBLS11_18595 PF02630 SCO1/SenC AMBLS11_18600 PF01040 UbiA prenyltransferase family AMBLS11_18605 PF02628 Cytochrome oxidase assembly protein AMBLS11_18625 PF00510 Cytochrome c oxidase subunit III AMBLS11_18630 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMBLS11_18635 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMBLS11_18640 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMBLS11_18640 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMBLS11_18645 PF01548 Transposase AMBLS11_18645 PF02371 Transposase IS116/IS110/IS902 family AMBLS11_18650 PF00717 Peptidase S24-like AMBLS11_18650 PF01726 LexA DNA binding domain AMBLS11_18655 PF00990 Diguanylate cyclase, GGDEF domain AMBLS11_18655 PF17151 Periplasmic sensor domain AMBLS11_18660 PF01553 Acyltransferase AMBLS11_18665 PF00585 C-terminal regulatory domain of Threonine dehydratase AMBLS11_18665 PF00291 Pyridoxal-phosphate dependent enzyme AMBLS11_18670 PF00920 Dehydratase family AMBLS11_18675 PF03458 UPF0126 domain AMBLS11_18680 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMBLS11_18680 PF01078 Magnesium chelatase, subunit ChlI AMBLS11_18685 PF03466 LysR substrate binding domain AMBLS11_18685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMBLS11_18690 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMBLS11_18690 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMBLS11_18695 PF07690 Major Facilitator Superfamily AMBLS11_18700 PF00326 Prolyl oligopeptidase family AMBLS11_18705 PF01103 Surface antigen AMBLS11_18705 PF17243 POTRA domain TamA domain 1 AMBLS11_18710 PF04357 TamB, inner membrane protein subunit of TAM complex AMBLS11_18735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMBLS11_18735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMBLS11_18745 PF01472 PUA domain AMBLS11_18745 PF00696 Amino acid kinase family AMBLS11_18765 PF03109 ABC1 family AMBLS11_18790 PF01979 Amidohydrolase family AMBLS11_18820 PF01206 Sulfurtransferase TusA AMBLS11_18825 PF00156 Phosphoribosyl transferase domain AMBLS11_18830 PF01138 3' exoribonuclease family, domain 1 AMBLS11_18830 PF03725 3' exoribonuclease family, domain 2 AMBLS11_18850 PF04820 Tryptophan halogenase AMBLS11_18865 PF00232 Glycosyl hydrolase family 1 AMBLS11_18875 PF00356 Bacterial regulatory proteins, lacI family AMBLS11_18890 PF00691 OmpA family AMBLS11_18890 PF05736 OprF membrane domain AMBLS11_18895 PF01966 HD domain AMBLS11_18910 PF00043 Glutathione S-transferase, C-terminal domain AMBLS11_18910 PF02798 Glutathione S-transferase, N-terminal domain AMBLS11_18925 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AMBLS11_18925 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMBLS11_18930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMBLS11_18930 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMBLS11_18935 PF00231 ATP synthase AMBLS11_18940 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMBLS11_18940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMBLS11_18940 PF00306 ATP synthase alpha/beta chain, C terminal domain AMBLS11_18945 PF00213 ATP synthase delta (OSCP) subunit AMBLS11_18950 PF00430 ATP synthase B/B' CF(0) AMBLS11_18955 PF00137 ATP synthase subunit C AMBLS11_18960 PF00119 ATP synthase A chain AMBLS11_18970 PF17762 HTH domain found in ParB protein AMBLS11_18970 PF02195 ParB-like nuclease domain AMBLS11_18975 PF13614 AAA domain AMBLS11_18980 PF02527 rRNA small subunit methyltransferase G AMBLS11_18985 PF13932 GidA associated domain AMBLS11_18985 PF01134 Glucose inhibited division protein A AMBLS11_19000 PF00258 Flavodoxin AMBLS11_19005 PF01926 50S ribosome-binding GTPase AMBLS11_19005 PF12631 MnmE helical domain AMBLS11_19005 PF10396 GTP-binding protein TrmE N-terminus AMBLS11_19010 PF04461 Protein of unknown function (DUF520) AMBLS11_19015 PF02096 60Kd inner membrane protein AMBLS11_19015 PF14849 YidC periplasmic domain AMBLS11_19020 PF01809 Putative membrane protein insertion efficiency factor AMBLS11_19025 PF00825 Ribonuclease P