locus-tag	class	description
AMBLS11_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AMBLS11_00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AMBLS11_00020	COG0187	DNA topoisomerase II activity
AMBLS11_00040	COG2818	Glycosylase
AMBLS11_00050	COG3078	GTPase activator activity
AMBLS11_00070	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AMBLS11_00070	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AMBLS11_00075	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
AMBLS11_00080	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AMBLS11_00085	COG2963	transposase activity
AMBLS11_00090	COG2801	Transposase and inactivated derivatives
AMBLS11_00095	COG0569	domain protein
AMBLS11_00100	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AMBLS11_00100	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMBLS11_00105	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AMBLS11_00120	COG0758	DNA mediated transformation
AMBLS11_00135	COG0009	L-threonylcarbamoyladenylate synthase
AMBLS11_00140	COG0408	coproporphyrinogen oxidase activity
AMBLS11_00145	COG3047	cAMP biosynthetic process
AMBLS11_00160	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AMBLS11_00210	COG2234	aminopeptidase activity
AMBLS11_00220	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AMBLS11_00245	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMBLS11_00305	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMBLS11_00320	COG3161	chorismate lyase activity
AMBLS11_00325	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AMBLS11_00335	COG0210	DNA helicase
AMBLS11_00375	COG3727	T/G mismatch-specific endonuclease activity
AMBLS11_00400	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AMBLS11_00405	COG0556	nucleotide-excision repair
AMBLS11_00415	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMBLS11_00420	COG1129	ABC transporter
AMBLS11_00420	COG0842	Transport permease protein
AMBLS11_00425	COG0842	Transport permease protein
AMBLS11_00445	COG0583	DNA-binding transcription factor activity
AMBLS11_00455	COG3106	COG3106 Predicted ATPase
AMBLS11_00470	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
AMBLS11_00485	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AMBLS11_00490	COG0352	thiamine-phosphate diphosphorylase activity
AMBLS11_00500	COG3071	HemY protein
AMBLS11_00505	COG2959	enzyme of heme biosynthesis
AMBLS11_00510	COG1587	Uroporphyrinogen-III synthase
AMBLS11_00515	COG0181	hydroxymethylbilane synthase activity
AMBLS11_00520	COG0745	RESPONSE REGULATOR receiver
AMBLS11_00520	COG3706	GGDEF domain
AMBLS11_00530	COG0194	GDP metabolic process
AMBLS11_00540	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMBLS11_00550	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMBLS11_00555	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AMBLS11_00565	COG0678	peroxiredoxin activity
AMBLS11_00580	COG1178	ABC-type Fe3 transport system permease component
AMBLS11_00585	COG3842	ATPase activity
AMBLS11_00590	COG3300	MHYT domain
AMBLS11_00590	COG5001	Diguanylate cyclase
AMBLS11_00600	COG2081	HI0933 family
AMBLS11_00610	COG3264	Mechanosensitive ion channel
AMBLS11_00610	COG1196	nuclear chromosome segregation
AMBLS11_00625	COG2200	EAL domain
AMBLS11_00630	COG3706	GGDEF domain
AMBLS11_00645	COG2076	Multidrug Resistance protein
AMBLS11_00660	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMBLS11_00675	COG0427	acetyl-CoA hydrolase
AMBLS11_00680	COG0123	including yeast histone deacetylase and acetoin utilization protein
AMBLS11_00695	COG0840	transmembrane signaling receptor activity
AMBLS11_00705	COG3064	Membrane
AMBLS11_00715	COG5001	Diguanylate cyclase
AMBLS11_00715	COG5002	protein histidine kinase activity
AMBLS11_00735	COG0514	ATP-dependent DNA helicase (RecQ)
AMBLS11_00740	COG2050	protein possibly involved in aromatic compounds catabolism
AMBLS11_00745	COG2239	Acts as a magnesium transporter
AMBLS11_00750	COG2962	Rard protein
AMBLS11_00755	COG3706	GGDEF domain
AMBLS11_00760	COG0210	DNA helicase
AMBLS11_00770	COG3706	GGDEF domain
AMBLS11_00775	COG1011	Hydrolase
AMBLS11_00790	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AMBLS11_00795	COG0019	diaminopimelate decarboxylase activity
AMBLS11_00825	COG0163	prenyltransferase activity
AMBLS11_00830	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMBLS11_00845	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AMBLS11_00855	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMBLS11_00880	COG1077	Cell shape determining protein MreB Mrl
AMBLS11_00890	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AMBLS11_00895	COG2814	Major facilitator Superfamily
AMBLS11_00900	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMBLS11_00930	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
AMBLS11_00940	COG0629	single-stranded DNA binding
AMBLS11_00955	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AMBLS11_00960	COG3250	beta-galactosidase activity
AMBLS11_00975	COG1349	DNA-binding transcription factor activity
AMBLS11_01000	COG1077	Cell shape determining protein MreB Mrl
AMBLS11_01005	COG1792	Involved in formation and maintenance of cell shape
AMBLS11_01010	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
AMBLS11_01020	COG1530	ribonuclease E activity
AMBLS11_01030	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMBLS11_01035	COG0312	modulator of DNA gyrase
AMBLS11_01045	COG3028	Belongs to the UPF0307 family
AMBLS11_01050	COG0312	modulator of DNA gyrase
AMBLS11_01065	COG0745	RESPONSE REGULATOR receiver
AMBLS11_01070	COG4191	Histidine kinase
AMBLS11_01070	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMBLS11_01075	COG0297	glycogen (starch) synthase activity
AMBLS11_01085	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AMBLS11_01195	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AMBLS11_01200	COG5002	protein histidine kinase activity
AMBLS11_01205	COG0745	RESPONSE REGULATOR receiver
AMBLS11_01230	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMBLS11_01335	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
AMBLS11_01345	COG0789	Transcriptional regulator
AMBLS11_01350	COG2217	Heavy metal translocating P-type atpase
AMBLS11_01445	COG0531	amino acid
AMBLS11_01455	COG2132	Multicopper oxidase
AMBLS11_01500	COG0745	RESPONSE REGULATOR receiver
AMBLS11_01510	COG0835	chemotaxis
AMBLS11_01525	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
AMBLS11_01540	COG0745	RESPONSE REGULATOR receiver
AMBLS11_01545	COG2198	Histidine kinase
AMBLS11_01545	COG0643	Histidine kinase
AMBLS11_01550	COG0835	chemotaxis
AMBLS11_01570	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
AMBLS11_01620	COG0546	phosphoglycolate phosphatase activity
AMBLS11_01630	COG2205	protein histidine kinase activity
AMBLS11_01630	COG0784	Response regulator, receiver
AMBLS11_01650	COG0673	inositol 2-dehydrogenase activity
AMBLS11_01660	COG2211	Major facilitator Superfamily
AMBLS11_01665	COG1082	Xylose isomerase domain protein TIM barrel
AMBLS11_01685	COG1454	alcohol dehydrogenase
AMBLS11_01690	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AMBLS11_01730	COG0089	rRNA binding
AMBLS11_01740	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AMBLS11_01750	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AMBLS11_01765	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
AMBLS11_01775	COG1519	Transferase
AMBLS11_01815	COG0788	formyltetrahydrofolate deformylase activity
AMBLS11_01825	COG1643	Atp-dependent helicase
AMBLS11_01830	COG2951	lytic endotransglycosylase activity
AMBLS11_01835	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMBLS11_01850	COG2354	Protein conserved in bacteria
AMBLS11_01860	COG4977	sequence-specific DNA binding
AMBLS11_01875	COG0004	ammonium transporteR
AMBLS11_01880	COG0405	Gamma-glutamyltransferase
AMBLS11_01885	COG2837	iron assimilation
AMBLS11_01895	COG0540	Belongs to the ATCase OTCase family
AMBLS11_01920	COG3850	Histidine kinase
AMBLS11_01920	COG4999	Histidine kinase
AMBLS11_01920	COG3437	response regulator, receiver
AMBLS11_01920	COG2205	protein histidine kinase activity
AMBLS11_01935	COG5001	Diguanylate cyclase
AMBLS11_01935	COG3300	MHYT domain
AMBLS11_01945	COG1012	belongs to the aldehyde dehydrogenase family
AMBLS11_01955	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMBLS11_01970	COG0180	Tryptophanyl-tRNA synthetase
AMBLS11_01975	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AMBLS11_01995	COG0338	D12 class N6 adenine-specific DNA methyltransferase
AMBLS11_02005	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AMBLS11_02040	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
AMBLS11_02045	COG0281	malic enzyme
AMBLS11_02055	COG0625	glutathione transferase activity
AMBLS11_02065	COG0753	catalase activity
AMBLS11_02080	COG5001	Diguanylate cyclase
AMBLS11_02080	COG3300	MHYT domain
AMBLS11_02085	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AMBLS11_02085	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
AMBLS11_02095	COG0137	argininosuccinate synthase activity
AMBLS11_02115	COG1803	Methylglyoxal synthase
AMBLS11_02125	COG0745	RESPONSE REGULATOR receiver
AMBLS11_02130	COG2205	protein histidine kinase activity
AMBLS11_02135	COG2267	carboxylic ester hydrolase activity
AMBLS11_02140	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AMBLS11_02145	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMBLS11_02150	COG1136	(ABC) transporter
AMBLS11_02150	COG0577	efflux transmembrane transporter activity
AMBLS11_02160	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AMBLS11_02170	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AMBLS11_02175	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMBLS11_02180	COG4942	peptidase
AMBLS11_02185	COG2861	carbohydrate metabolic process
AMBLS11_02195	COG0584	glycerophosphoryl diester phosphodiesterase
AMBLS11_02210	COG1162	GTPase activity
AMBLS11_02215	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AMBLS11_02230	COG4771	TonB-dependent receptor
AMBLS11_02235	COG2963	transposase activity
AMBLS11_02240	COG2801	Transposase and inactivated derivatives
AMBLS11_02245	COG0457	Tetratricopeptide repeat
AMBLS11_02260	COG0028	Belongs to the TPP enzyme family
AMBLS11_02280	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMBLS11_02285	COG0805	protein transport
AMBLS11_02295	COG0084	hydrolase, TatD family'
AMBLS11_02300	COG2203	Gaf domain
AMBLS11_02300	COG5001	Diguanylate cyclase
AMBLS11_02300	COG4251	negative regulation of phosphorylation
AMBLS11_02300	COG3706	GGDEF domain
AMBLS11_02310	COG0248	Ppx GppA phosphatase
AMBLS11_02315	COG0513	Belongs to the DEAD box helicase family
AMBLS11_02320	COG3118	belongs to the thioredoxin family
AMBLS11_02325	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AMBLS11_02340	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AMBLS11_02345	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AMBLS11_02350	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AMBLS11_02360	COG0783	Belongs to the Dps family
AMBLS11_02365	COG2133	pyrroloquinoline quinone binding
AMBLS11_02370	COG1506	peptidase
AMBLS11_02370	COG4946	Tricorn protease homolog
AMBLS11_02370	COG0823	Involved in the tonB-independent uptake of proteins
AMBLS11_02380	COG3118	belongs to the thioredoxin family
AMBLS11_02395	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
AMBLS11_02405	COG1012	belongs to the aldehyde dehydrogenase family
AMBLS11_02430	COG1757	Na H antiporter
AMBLS11_02445	COG3876	Protein conserved in bacteria
AMBLS11_02450	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
AMBLS11_02470	COG0346	lactoylglutathione lyase activity
AMBLS11_02495	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AMBLS11_02505	COG2824	Alkylphosphonate utilization operon protein PhnA
AMBLS11_02510	COG0454	-acetyltransferase
AMBLS11_02540	COG3547	Transposase (IS116 IS110 IS902 family)
AMBLS11_02580	COG0183	Belongs to the thiolase family
AMBLS11_02585	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMBLS11_02585	COG1024	Enoyl-CoA hydratase
AMBLS11_02590	COG0739	heme binding
AMBLS11_02590	COG0741	lytic transglycosylase activity
AMBLS11_02590	COG1196	nuclear chromosome segregation
AMBLS11_02595	COG0006	proline dipeptidase activity
AMBLS11_02605	COG0142	geranyltranstransferase activity
AMBLS11_02635	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMBLS11_02645	COG1238	metal cluster binding
AMBLS11_02655	COG0585	pseudouridine synthase activity
AMBLS11_02660	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
AMBLS11_02670	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AMBLS11_02680	COG0840	transmembrane signaling receptor activity
AMBLS11_02710	COG0494	nUDIX hydrolase
AMBLS11_02715	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
AMBLS11_02720	COG0730	response to heat
AMBLS11_02725	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
AMBLS11_02730	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AMBLS11_02735	COG2201	protein-glutamate methylesterase activity
AMBLS11_02740	COG3706	GGDEF domain
AMBLS11_02745	COG2205	protein histidine kinase activity
AMBLS11_02745	COG3437	response regulator, receiver
AMBLS11_02745	COG3850	Histidine kinase
AMBLS11_02745	COG4999	Histidine kinase
AMBLS11_02770	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AMBLS11_02790	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
AMBLS11_02800	COG1648	precorrin-2 dehydrogenase activity
AMBLS11_02800	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AMBLS11_02805	COG0513	Belongs to the DEAD box helicase family
AMBLS11_02825	COG1538	Outer membrane efflux protein
AMBLS11_02830	COG0494	nUDIX hydrolase
AMBLS11_02840	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AMBLS11_02845	COG3150	esterase
AMBLS11_02850	COG0187	DNA topoisomerase II activity
AMBLS11_02860	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMBLS11_02880	COG1509	lysine 2,3-aminomutase activity
AMBLS11_02890	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
AMBLS11_02895	COG4771	TonB-dependent receptor
AMBLS11_02900	COG2963	transposase activity
AMBLS11_02905	COG2801	Transposase and inactivated derivatives
AMBLS11_02915	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AMBLS11_02920	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMBLS11_02935	COG0271	Belongs to the BolA IbaG family
AMBLS11_02945	COG3707	response regulator
AMBLS11_02955	COG0659	secondary active sulfate transmembrane transporter activity
AMBLS11_02960	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMBLS11_02965	COG2146	nitrite reductase [NAD(P)H] activity
AMBLS11_02980	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AMBLS11_02980	COG1648	precorrin-2 dehydrogenase activity
AMBLS11_02990	COG0737	Belongs to the 5'-nucleotidase family
AMBLS11_02995	COG3706	GGDEF domain
AMBLS11_03005	COG1116	anion transmembrane transporter activity
AMBLS11_03005	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMBLS11_03015	COG1116	anion transmembrane transporter activity
AMBLS11_03030	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMBLS11_03035	COG4206	TonB-dependent receptor
AMBLS11_03040	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AMBLS11_03045	COG0348	domain, Protein
AMBLS11_03060	COG1960	acyl-CoA dehydrogenase activity
AMBLS11_03065	COG1028	Short-chain dehydrogenase reductase Sdr
AMBLS11_03075	COG4948	Mandelate Racemase Muconate Lactonizing
AMBLS11_03095	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMBLS11_03100	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMBLS11_03120	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMBLS11_03125	COG0358	DNA primase activity
AMBLS11_03150	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
AMBLS11_03155	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AMBLS11_03170	COG0537	adenosine 5'-monophosphoramidase activity
AMBLS11_03185	COG3135	benzoate transporter
AMBLS11_03190	COG1396	sequence-specific DNA binding
AMBLS11_03195	COG2974	May be involved in recombination
AMBLS11_03200	COG4191	Histidine kinase
AMBLS11_03200	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMBLS11_03205	COG0745	RESPONSE REGULATOR receiver
AMBLS11_03210	COG5002	protein histidine kinase activity
AMBLS11_03240	COG0811	peptide transport
AMBLS11_03245	COG0811	peptide transport
AMBLS11_03250	COG0848	biopolymer transport protein
AMBLS11_03255	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
AMBLS11_03265	COG3437	response regulator, receiver
AMBLS11_03280	COG0318	PFAM AMP-dependent synthetase and ligase
AMBLS11_03290	COG2133	pyrroloquinoline quinone binding
AMBLS11_03295	COG1049	propionate catabolic process, 2-methylcitrate cycle
AMBLS11_03335	COG0527	aspartate kinase activity
AMBLS11_03345	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AMBLS11_03350	COG2967	ApaG domain
AMBLS11_03360	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AMBLS11_03365	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMBLS11_03370	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
AMBLS11_03375	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AMBLS11_03385	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMBLS11_03390	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AMBLS11_03405	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AMBLS11_03420	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMBLS11_03425	COG3956	TIGRFAM MazG family protein
AMBLS11_03450	COG1028	Short-chain dehydrogenase reductase Sdr
AMBLS11_03460	COG0318	PFAM AMP-dependent synthetase and ligase
AMBLS11_03470	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AMBLS11_03480	COG0463	Glycosyl transferase, family 2
AMBLS11_03505	COG0745	RESPONSE REGULATOR receiver
AMBLS11_03520	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AMBLS11_03525	COG0723	plastoquinol--plastocyanin reductase activity
AMBLS11_03530	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AMBLS11_03535	COG2857	Cytochrome c1
AMBLS11_03540	COG0625	glutathione transferase activity
AMBLS11_03545	COG2969	positive regulation of protein catabolic process
AMBLS11_03560	COG0745	RESPONSE REGULATOR receiver
AMBLS11_03565	COG2239	Acts as a magnesium transporter
AMBLS11_03570	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMBLS11_03580	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMBLS11_03590	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
AMBLS11_03595	COG1137	ATPase activity
AMBLS11_03600	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AMBLS11_03610	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AMBLS11_03625	COG1127	ABC transporter
AMBLS11_03630	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AMBLS11_03635	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AMBLS11_03640	COG2854	intermembrane phospholipid transfer
AMBLS11_03650	COG5007	Belongs to the BolA IbaG family
AMBLS11_03660	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMBLS11_03665	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMBLS11_03675	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AMBLS11_03695	COG2308	Evidence 4 Homologs of previously reported genes of
AMBLS11_03700	COG1305	Transglutaminase-like
AMBLS11_03730	COG4771	TonB-dependent receptor
AMBLS11_03735	COG0697	spore germination
AMBLS11_03745	COG0784	Response regulator, receiver
AMBLS11_03745	COG2205	protein histidine kinase activity
AMBLS11_03770	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AMBLS11_03780	COG0126	phosphoglycerate kinase activity
AMBLS11_03785	COG3588	fructose-bisphosphate aldolase
AMBLS11_03790	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AMBLS11_03800	COG0745	RESPONSE REGULATOR receiver
AMBLS11_03805	COG5002	protein histidine kinase activity
AMBLS11_03825	COG1538	Outer membrane efflux protein
AMBLS11_03835	COG0823	Involved in the tonB-independent uptake of proteins
AMBLS11_03835	COG1506	peptidase
AMBLS11_03835	COG4946	Tricorn protease homolog
AMBLS11_03840	COG0248	Ppx GppA phosphatase
AMBLS11_03845	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
AMBLS11_03855	COG0573	inorganic phosphate transmembrane transporter activity
AMBLS11_03865	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AMBLS11_03875	COG0306	phosphate transporter
AMBLS11_03885	COG0583	DNA-binding transcription factor activity
AMBLS11_03910	COG1272	protein, Hemolysin III
AMBLS11_03915	COG1846	Transcriptional regulator
AMBLS11_03920	COG1764	response to oxidative stress
AMBLS11_03935	COG1739	Uncharacterized protein family UPF0029
AMBLS11_03940	COG3279	Response regulator of the LytR AlgR family
AMBLS11_03965	COG0420	3'-5' exonuclease activity
AMBLS11_03970	COG0419	ATPase involved in DNA repair
AMBLS11_03980	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
AMBLS11_04005	COG2986	histidine ammonia-lyase
AMBLS11_04015	COG2971	BadF BadG BcrA BcrD
AMBLS11_04020	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
AMBLS11_04030	COG0488	(ABC) transporter
AMBLS11_04055	COG0668	transmembrane transport
AMBLS11_04060	COG3866	Pectate lyase
AMBLS11_04075	COG2204	response regulator
AMBLS11_04085	COG4206	TonB-dependent receptor
AMBLS11_04095	COG0471	metal ion transport
AMBLS11_04100	COG0281	malic enzyme
AMBLS11_04180	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMBLS11_04185	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AMBLS11_04190	COG0513	Belongs to the DEAD box helicase family
AMBLS11_04205	COG3409	Peptidoglycan-binding domain 1 protein
AMBLS11_04205	COG3267	Type II secretory pathway component ExeA
AMBLS11_04215	COG2801	Transposase and inactivated derivatives
AMBLS11_04220	COG2963	transposase activity
AMBLS11_04240	COG0473	3-isopropylmalate dehydrogenase activity
AMBLS11_04245	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AMBLS11_04285	COG4555	ABC transporter
AMBLS11_04290	COG1668	transmembrane transport
AMBLS11_04300	COG0745	RESPONSE REGULATOR receiver
AMBLS11_04345	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMBLS11_04350	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMBLS11_04355	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMBLS11_04365	COG1138	Cytochrome C-type biogenesis protein
AMBLS11_04385	COG2853	Lipoprotein
AMBLS11_04390	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AMBLS11_04400	COG3104	oligopeptide transport
AMBLS11_04445	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AMBLS11_04450	COG1555	photosystem II stabilization
AMBLS11_04450	COG1596	polysaccharide export
AMBLS11_04455	COG0473	3-isopropylmalate dehydrogenase activity
AMBLS11_04470	COG1611	Belongs to the LOG family
AMBLS11_04475	COG3706	GGDEF domain
AMBLS11_04475	COG0745	RESPONSE REGULATOR receiver
AMBLS11_04480	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AMBLS11_04480	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AMBLS11_04505	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
AMBLS11_04510	COG0071	Belongs to the small heat shock protein (HSP20) family
AMBLS11_04530	COG0564	pseudouridine synthase activity
AMBLS11_04545	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
AMBLS11_04550	COG0024	Methionine aminopeptidase
AMBLS11_04555	COG0052	Belongs to the universal ribosomal protein uS2 family
AMBLS11_04565	COG0528	UMP kinase activity
AMBLS11_04575	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AMBLS11_04580	COG0575	Belongs to the CDS family
AMBLS11_04590	COG0750	zinc metalloprotease
AMBLS11_04605	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMBLS11_04625	COG0587	DNA-directed DNA polymerase activity
AMBLS11_04630	COG0825	malonyl-CoA metabolic process
AMBLS11_04635	COG0037	tRNA processing
AMBLS11_04655	COG0590	tRNA wobble adenosine to inosine editing
AMBLS11_04670	COG0047	phosphoribosylformylglycinamidine synthase activity
AMBLS11_04670	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AMBLS11_04675	COG2840	Smr protein MutS2
AMBLS11_04710	COG0784	Response regulator, receiver
AMBLS11_04710	COG0835	chemotaxis
AMBLS11_04715	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AMBLS11_04720	COG1815	bacterial-type flagellum-dependent cell motility
AMBLS11_04725	COG1558	bacterial-type flagellum-dependent cell motility
AMBLS11_04730	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
AMBLS11_04735	COG1749	Flagellar hook protein flgE
AMBLS11_04740	COG4787	bacterial-type flagellum-dependent cell motility
AMBLS11_04745	COG4786	Flagellar basal body rod
AMBLS11_04760	COG3951	Flagellar rod assembly protein muramidase FlgJ
AMBLS11_04760	COG1705	Flagellar rod assembly protein muramidase FlgJ
AMBLS11_04765	COG1256	bacterial-type flagellum assembly
AMBLS11_04785	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AMBLS11_04790	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AMBLS11_04800	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
AMBLS11_04840	COG0673	inositol 2-dehydrogenase activity
AMBLS11_04845	COG1083	cytidylyl-transferase
AMBLS11_04860	COG2089	acid synthase
AMBLS11_04875	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMBLS11_04885	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AMBLS11_04890	COG1086	Polysaccharide biosynthesis protein
AMBLS11_04905	COG3475	LICD family
AMBLS11_04910	COG2089	acid synthase
AMBLS11_04920	COG1083	cytidylyl-transferase
AMBLS11_04925	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
AMBLS11_04935	COG2204	response regulator
AMBLS11_04940	COG3852	Histidine kinase
AMBLS11_04945	COG2204	response regulator
AMBLS11_04950	COG1677	Flagellar hook-basal body complex protein FliE
AMBLS11_04955	COG1766	The M ring may be actively involved in energy transduction
AMBLS11_04960	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AMBLS11_05010	COG1987	bacterial-type flagellum assembly
AMBLS11_05030	COG2989	Protein conserved in bacteria
AMBLS11_05035	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AMBLS11_05045	COG0455	bacterial-type flagellum organization
AMBLS11_05060	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
AMBLS11_05065	COG2198	Histidine kinase
AMBLS11_05065	COG0643	Histidine kinase
AMBLS11_05075	COG1192	Involved in chromosome partitioning
AMBLS11_05085	COG0835	chemotaxis
AMBLS11_05100	COG0646	methionine synthase
AMBLS11_05100	COG1410	methionine synthase
AMBLS11_05105	COG0646	methionine synthase
AMBLS11_05105	COG1410	methionine synthase
AMBLS11_05115	COG3123	guanosine phosphorylase activity
AMBLS11_05125	COG0583	DNA-binding transcription factor activity
AMBLS11_05130	COG0583	DNA-binding transcription factor activity
AMBLS11_05135	COG0288	reversible hydration of carbon dioxide
AMBLS11_05140	COG0659	secondary active sulfate transmembrane transporter activity
AMBLS11_05150	COG1309	transcriptional regulator
AMBLS11_05155	COG3590	peptidase
AMBLS11_05165	COG2137	regulation of response to DNA damage stimulus
AMBLS11_05170	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AMBLS11_05180	COG1607	acyl-coa hydrolase
AMBLS11_05195	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
AMBLS11_05200	COG4172	Belongs to the ABC transporter superfamily
AMBLS11_05210	COG4171	peptide transport system, permease
AMBLS11_05215	COG4168	peptide transport system, permease
AMBLS11_05220	COG0747	negative chemotaxis
AMBLS11_05225	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
AMBLS11_05230	COG1842	Phage shock protein A
AMBLS11_05260	COG0625	glutathione transferase activity
AMBLS11_05265	COG1522	sequence-specific DNA binding
AMBLS11_05270	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AMBLS11_05325	COG0811	peptide transport
AMBLS11_05330	COG0811	peptide transport
AMBLS11_05335	COG0848	biopolymer transport protein
AMBLS11_05350	COG1444	tRNA N-acetyltransferase activity
AMBLS11_05385	COG0456	acetyltransferase
AMBLS11_05395	COG0583	DNA-binding transcription factor activity
AMBLS11_05400	COG2814	Major facilitator Superfamily
AMBLS11_05405	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMBLS11_05410	COG0656	L-ascorbic acid biosynthetic process
AMBLS11_05430	COG1846	Transcriptional regulator
AMBLS11_05435	COG4771	TonB-dependent receptor
AMBLS11_05470	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AMBLS11_05480	COG3706	GGDEF domain
AMBLS11_05525	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
AMBLS11_05530	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AMBLS11_05535	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AMBLS11_05540	COG0564	pseudouridine synthase activity
AMBLS11_05550	COG0612	Peptidase, M16
AMBLS11_05585	COG2890	protein-(glutamine-N5) methyltransferase activity
AMBLS11_05600	COG2719	SpoVR family
AMBLS11_05605	COG2718	Belongs to the UPF0229 family
AMBLS11_05610	COG2766	serine protein kinase
AMBLS11_05620	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AMBLS11_05625	COG4771	TonB-dependent receptor
AMBLS11_05650	COG0450	alkyl hydroperoxide reductase
AMBLS11_05655	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMBLS11_05660	COG2885	chlorophyll binding
AMBLS11_05665	COG0584	glycerophosphoryl diester phosphodiesterase
AMBLS11_05670	COG0346	lactoylglutathione lyase activity
AMBLS11_05680	COG1278	Cold shock
AMBLS11_05695	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AMBLS11_05700	COG4660	Part of a membrane complex involved in electron transport
AMBLS11_05705	COG4659	FMN binding
AMBLS11_05710	COG4658	electron transport chain
AMBLS11_05715	COG4656	Part of a membrane complex involved in electron transport
AMBLS11_05720	COG2878	Part of a membrane complex involved in electron transport
AMBLS11_05730	COG0534	Mate efflux family protein
AMBLS11_05735	COG0556	nucleotide-excision repair
AMBLS11_05750	COG0602	queuosine metabolic process
AMBLS11_05760	COG0367	asparagine synthase
AMBLS11_05780	COG3273	potassium ion transport
AMBLS11_05780	COG0471	metal ion transport
AMBLS11_05795	COG0529	Catalyzes the synthesis of activated sulfate
AMBLS11_05800	COG0175	sulfate reduction
AMBLS11_05805	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AMBLS11_05810	COG0745	RESPONSE REGULATOR receiver
AMBLS11_05810	COG3706	GGDEF domain
AMBLS11_05835	COG2304	oxidoreductase activity
AMBLS11_05855	COG0714	Associated with various cellular activities
AMBLS11_05865	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMBLS11_05865	COG1024	Enoyl-CoA hydratase
AMBLS11_05880	COG1025	Belongs to the peptidase M16 family
AMBLS11_05885	COG2062	phosphohistidine phosphatase, SixA
AMBLS11_05895	COG4536	flavin adenine dinucleotide binding
AMBLS11_05900	COG4137	Cytochrome C assembly protein
AMBLS11_05905	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AMBLS11_05945	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMBLS11_05950	COG1132	(ABC) transporter
AMBLS11_05960	COG0228	four-way junction DNA binding
AMBLS11_05965	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AMBLS11_05970	COG0336	Belongs to the RNA methyltransferase TrmD family
AMBLS11_05975	COG0335	large ribosomal subunit rRNA binding
AMBLS11_05990	COG2860	membrane
AMBLS11_06000	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AMBLS11_06005	COG1605	Chorismate mutase
AMBLS11_06005	COG0287	Prephenate dehydrogenase
AMBLS11_06040	COG0077	Prephenate dehydratase
AMBLS11_06040	COG1605	Chorismate mutase
AMBLS11_06050	COG0023	Translation Initiation Factor
AMBLS11_06080	COG2205	protein histidine kinase activity
AMBLS11_06090	COG2204	response regulator
AMBLS11_06105	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AMBLS11_06110	COG0494	nUDIX hydrolase
AMBLS11_06115	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
AMBLS11_06125	COG2255	four-way junction helicase activity
AMBLS11_06130	COG0824	Thioesterase
AMBLS11_06135	COG0811	peptide transport
AMBLS11_06150	COG0823	Involved in the tonB-independent uptake of proteins
AMBLS11_06155	COG2885	chlorophyll binding
AMBLS11_06160	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
AMBLS11_06170	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
AMBLS11_06180	COG4667	esterase of the alpha-beta hydrolase superfamily
AMBLS11_06185	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AMBLS11_06205	COG3038	cytochrome b561
AMBLS11_06225	COG1451	nucleotide metabolic process
AMBLS11_06230	COG0517	IMP dehydrogenase activity
AMBLS11_06245	COG1309	transcriptional regulator
AMBLS11_06250	COG4774	siderophore transport
AMBLS11_06270	COG3706	GGDEF domain
AMBLS11_06280	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AMBLS11_06280	COG3008	intermembrane lipid transfer
AMBLS11_06285	COG2995	paraquat-inducible protein a
AMBLS11_06295	COG0017	Asparaginyl-tRNA synthetase
AMBLS11_06310	COG0189	ligase activity
AMBLS11_06340	COG0156	8-amino-7-oxononanoate synthase activity
AMBLS11_06345	COG2226	methyltransferase
AMBLS11_06360	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AMBLS11_06365	COG4139	cobalamin transport
AMBLS11_06370	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
AMBLS11_06375	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
AMBLS11_06380	COG2205	protein histidine kinase activity
AMBLS11_06385	COG0745	RESPONSE REGULATOR receiver
AMBLS11_06390	COG0569	domain protein
AMBLS11_06395	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AMBLS11_06410	COG5265	(ABC) transporter
AMBLS11_06415	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMBLS11_06425	COG0745	RESPONSE REGULATOR receiver
AMBLS11_06430	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMBLS11_06450	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AMBLS11_06460	COG2755	lipolytic protein G-D-S-L family
AMBLS11_06465	COG4181	ATPase activity
AMBLS11_06470	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
AMBLS11_06475	COG1090	epimerase
AMBLS11_06480	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AMBLS11_06485	COG0628	permease
AMBLS11_06495	COG0745	RESPONSE REGULATOR receiver
AMBLS11_06510	COG2350	Protein conserved in bacteria
AMBLS11_06515	COG0159	tryptophan synthase activity
AMBLS11_06525	COG0134	indole-3-glycerol-phosphate synthase activity
AMBLS11_06525	COG0135	phosphoribosylanthranilate isomerase activity
AMBLS11_06530	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AMBLS11_06540	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AMBLS11_06545	COG0613	PHP domain protein
AMBLS11_06550	COG0009	L-threonylcarbamoyladenylate synthase
AMBLS11_06560	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AMBLS11_06570	COG0656	L-ascorbic acid biosynthetic process
AMBLS11_06575	COG0110	maltose O-acetyltransferase activity
AMBLS11_06585	COG2733	membrane
AMBLS11_06590	COG0500	methyltransferase
AMBLS11_06595	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMBLS11_06600	COG0497	DNA recombination
AMBLS11_06605	COG0783	Belongs to the Dps family
AMBLS11_06620	COG1454	alcohol dehydrogenase
AMBLS11_06625	COG1028	Short-chain dehydrogenase reductase Sdr
AMBLS11_06635	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMBLS11_06640	COG2610	gluconate transmembrane transporter activity
AMBLS11_06660	COG0784	Response regulator, receiver
AMBLS11_06660	COG2198	Histidine kinase
AMBLS11_06660	COG2205	protein histidine kinase activity
AMBLS11_06665	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
AMBLS11_06675	COG0484	heat shock protein binding
AMBLS11_06680	COG3909	cytochrome
AMBLS11_06685	COG2202	Pas domain
AMBLS11_06685	COG2200	EAL domain
AMBLS11_06685	COG2199	diguanylate cyclase activity
AMBLS11_06700	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AMBLS11_06705	COG0505	Belongs to the CarA family
AMBLS11_06710	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AMBLS11_06715	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMBLS11_06735	COG0071	Belongs to the small heat shock protein (HSP20) family
AMBLS11_06740	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AMBLS11_06745	COG0857	belongs to the CobB CobQ family
AMBLS11_06745	COG0280	phosphate acetyltransferase
AMBLS11_06750	COG1228	amidohydrolase
AMBLS11_06755	COG0815	Transfers the fatty acyl group on membrane lipoproteins
AMBLS11_06760	COG4535	Mg2 and Co2 transporter CorC
AMBLS11_06770	COG1702	phosphate starvation-inducible protein PhoH
AMBLS11_06785	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMBLS11_06820	COG1607	acyl-coa hydrolase
AMBLS11_06825	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AMBLS11_06835	COG1115	amino acid carrier protein
AMBLS11_06845	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMBLS11_06850	COG0012	GTP binding
AMBLS11_06865	COG1064	alcohol dehydrogenase
AMBLS11_06880	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AMBLS11_06885	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
AMBLS11_06890	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
AMBLS11_06895	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
AMBLS11_06905	COG2890	protein-(glutamine-N5) methyltransferase activity
AMBLS11_06910	COG3437	response regulator, receiver
AMBLS11_06910	COG0784	Response regulator, receiver
AMBLS11_06915	COG3094	Invasion gene expression up-regulator, SirB
AMBLS11_06930	COG0583	DNA-binding transcription factor activity
AMBLS11_06940	COG2363	Small membrane protein
AMBLS11_06955	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
AMBLS11_06960	COG0515	serine threonine protein kinase
AMBLS11_06965	COG2116	formate transmembrane transporter activity
AMBLS11_06980	COG0714	Associated with various cellular activities
AMBLS11_06990	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
AMBLS11_06995	COG0033	Phosphoglucomutase
AMBLS11_07000	COG0058	SHG alpha-glucan phosphorylase activity
AMBLS11_07010	COG2988	succinylglutamate desuccinylase activity
AMBLS11_07025	COG1506	peptidase
AMBLS11_07030	COG1301	dicarboxylic acid transport
AMBLS11_07050	COG1393	Belongs to the ArsC family
AMBLS11_07055	COG2211	Major facilitator Superfamily
AMBLS11_07055	COG2190	(PTS) system
AMBLS11_07075	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
AMBLS11_07090	COG5001	Diguanylate cyclase
AMBLS11_07090	COG3300	MHYT domain
AMBLS11_07115	COG2249	NAD(P)H dehydrogenase (quinone) activity
AMBLS11_07125	COG1733	regulation of RNA biosynthetic process
AMBLS11_07135	COG5001	Diguanylate cyclase
AMBLS11_07135	COG3447	MASE1 domain protein
AMBLS11_07135	COG5002	protein histidine kinase activity
AMBLS11_07145	COG0402	S-adenosylhomocysteine deaminase activity
AMBLS11_07150	COG2351	hydroxyisourate hydrolase activity
AMBLS11_07165	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AMBLS11_07175	COG1309	transcriptional regulator
AMBLS11_07190	COG2252	PERMEase
AMBLS11_07195	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AMBLS11_07210	COG0745	RESPONSE REGULATOR receiver
AMBLS11_07210	COG3706	GGDEF domain
AMBLS11_07215	COG0784	Response regulator, receiver
AMBLS11_07215	COG2205	protein histidine kinase activity
AMBLS11_07230	COG2233	PERMEase
AMBLS11_07235	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AMBLS11_07250	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AMBLS11_07255	COG0730	response to heat
AMBLS11_07265	COG0154	amidase activity
AMBLS11_07315	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AMBLS11_07335	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AMBLS11_07345	COG1596	polysaccharide export
AMBLS11_07350	COG0489	protein tyrosine kinase activity
AMBLS11_07355	COG4464	protein tyrosine phosphatase activity
AMBLS11_07380	COG5002	protein histidine kinase activity
AMBLS11_07380	COG5001	Diguanylate cyclase
AMBLS11_07390	COG0438	transferase activity, transferring glycosyl groups
AMBLS11_07420	COG1216	Glycosyl transferase, family 2
AMBLS11_07445	COG1216	Glycosyl transferase, family 2
AMBLS11_07455	COG0438	transferase activity, transferring glycosyl groups
AMBLS11_07480	COG2755	lipolytic protein G-D-S-L family
AMBLS11_07480	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AMBLS11_07495	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMBLS11_07495	COG0072	phenylalanine-tRNA ligase activity
AMBLS11_07520	COG1472	Belongs to the glycosyl hydrolase 3 family
AMBLS11_07525	COG2096	Adenosyltransferase
AMBLS11_07535	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AMBLS11_07545	COG4591	ABC-type transport system involved in lipoprotein release permease component
AMBLS11_07555	COG4191	Histidine kinase
AMBLS11_07570	COG0708	Exodeoxyribonuclease III
AMBLS11_07605	COG2814	Major facilitator Superfamily
AMBLS11_07640	COG1024	Enoyl-CoA hydratase
AMBLS11_07645	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AMBLS11_07650	COG1960	acyl-CoA dehydrogenase activity
AMBLS11_07655	COG0789	Transcriptional regulator
AMBLS11_07660	COG0183	Belongs to the thiolase family
AMBLS11_07685	COG2925	Exonuclease
AMBLS11_07730	COG1643	Atp-dependent helicase
AMBLS11_07750	COG3321	synthase
AMBLS11_07750	COG0604	alcohol dehydrogenase
AMBLS11_07755	COG0328	RNA-DNA hybrid ribonuclease activity
AMBLS11_07760	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMBLS11_07770	COG4943	cyclic-guanylate-specific phosphodiesterase activity
AMBLS11_07775	COG1136	(ABC) transporter
AMBLS11_07780	COG4591	ABC-type transport system involved in lipoprotein release permease component
AMBLS11_07785	COG1301	dicarboxylic acid transport
AMBLS11_07795	COG3724	N-succinylarginine dihydrolase activity
AMBLS11_07800	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AMBLS11_07805	COG3122	Protein conserved in bacteria
AMBLS11_07820	COG0583	DNA-binding transcription factor activity
AMBLS11_07825	COG0746	molybdenum cofactor guanylyltransferase activity
AMBLS11_07830	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AMBLS11_07835	COG0243	molybdopterin cofactor binding
AMBLS11_07850	COG1530	ribonuclease E activity
AMBLS11_07855	COG0564	pseudouridine synthase activity
AMBLS11_07860	COG0546	phosphoglycolate phosphatase activity
AMBLS11_07865	COG0424	maF-like protein
AMBLS11_07870	COG1399	metal-binding, possibly nucleic acid-binding protein
AMBLS11_07880	COG0416	fatty acid biosynthetic process
AMBLS11_07885	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMBLS11_07890	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AMBLS11_07900	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AMBLS11_07905	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AMBLS11_07910	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AMBLS11_07915	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AMBLS11_07930	COG0084	hydrolase, TatD family'
AMBLS11_07935	COG0259	pyridoxamine-phosphate oxidase activity
AMBLS11_07940	COG0702	epimerase
AMBLS11_07945	COG3706	GGDEF domain
AMBLS11_07950	COG2963	transposase activity
AMBLS11_07955	COG2801	Transposase and inactivated derivatives
AMBLS11_07970	COG1028	Short-chain dehydrogenase reductase Sdr
AMBLS11_07975	COG0596	Alpha beta hydrolase
AMBLS11_07985	COG0183	Belongs to the thiolase family
AMBLS11_07990	COG1960	acyl-CoA dehydrogenase activity
AMBLS11_08010	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMBLS11_08020	COG0246	Mannitol dehydrogenase
AMBLS11_08045	COG0668	transmembrane transport
AMBLS11_08050	COG4771	TonB-dependent receptor
AMBLS11_08060	COG2205	protein histidine kinase activity
AMBLS11_08060	COG2198	Histidine kinase
AMBLS11_08060	COG0784	Response regulator, receiver
AMBLS11_08065	COG3437	response regulator, receiver
AMBLS11_08075	COG0195	Participates in both transcription termination and antitermination
AMBLS11_08090	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AMBLS11_08100	COG5001	Diguanylate cyclase
AMBLS11_08100	COG3300	MHYT domain
AMBLS11_08105	COG1187	pseudouridine synthase activity
AMBLS11_08115	COG3153	acetyltransferase
AMBLS11_08115	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMBLS11_08140	COG0450	alkyl hydroperoxide reductase
AMBLS11_08180	COG1032	radical SAM domain protein
AMBLS11_08195	COG2203	Gaf domain
AMBLS11_08195	COG3706	GGDEF domain
AMBLS11_08195	COG5001	Diguanylate cyclase
AMBLS11_08195	COG4251	negative regulation of phosphorylation
AMBLS11_08220	COG4221	oxidoreductase activity
AMBLS11_08225	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMBLS11_08230	COG0385	Bile acid
AMBLS11_08245	COG1902	pentaerythritol trinitrate reductase activity
AMBLS11_08255	COG2867	negative regulation of translational initiation
AMBLS11_08260	COG2914	Belongs to the UPF0125 (RnfH) family
AMBLS11_08270	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AMBLS11_08275	COG4771	TonB-dependent receptor
AMBLS11_08280	COG0457	Tetratricopeptide repeat
AMBLS11_08300	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AMBLS11_08300	COG0574	Belongs to the PEP-utilizing enzyme family
AMBLS11_08330	COG2850	peptidyl-arginine hydroxylation
AMBLS11_08340	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AMBLS11_08345	COG2915	High frequency lysogenization protein hflD homolog
AMBLS11_08350	COG0482	sulfurtransferase activity
AMBLS11_08355	COG1187	pseudouridine synthase activity
AMBLS11_08365	COG1278	Cold shock
AMBLS11_08370	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AMBLS11_08375	COG0542	response to heat
AMBLS11_08380	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
AMBLS11_08385	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
AMBLS11_08390	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AMBLS11_08395	COG0492	ferredoxin-NADP+ reductase activity
AMBLS11_08400	COG3092	negative regulation of chromosome organization
AMBLS11_08405	COG0616	signal peptide processing
AMBLS11_08420	COG0778	Nitroreductase
AMBLS11_08430	COG0252	asparaginase activity
AMBLS11_08435	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AMBLS11_08440	COG0321	lipoyl(octanoyl) transferase activity
AMBLS11_08445	COG2921	Belongs to the UPF0250 family
AMBLS11_08450	COG1686	Belongs to the peptidase S11 family
AMBLS11_08455	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AMBLS11_08460	COG0772	Belongs to the SEDS family
AMBLS11_08465	COG0768	penicillin binding
AMBLS11_08470	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AMBLS11_08475	COG0799	negative regulation of ribosome biogenesis
AMBLS11_08480	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AMBLS11_08485	COG1466	dna polymerase III delta subunit
AMBLS11_08490	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
AMBLS11_08495	COG0495	leucyl-tRNA aminoacylation
AMBLS11_08505	COG1067	ATP-dependent peptidase activity
AMBLS11_08525	COG1534	Rna-binding protein
AMBLS11_08530	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
AMBLS11_08535	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AMBLS11_08540	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AMBLS11_08545	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMBLS11_08550	COG0149	triose-phosphate isomerase activity
AMBLS11_08555	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AMBLS11_08560	COG3300	MHYT domain
AMBLS11_08560	COG5001	Diguanylate cyclase
AMBLS11_08580	COG1803	Methylglyoxal synthase
AMBLS11_08580	COG1597	lipid kinase activity
AMBLS11_08590	COG1028	Short-chain dehydrogenase reductase Sdr
AMBLS11_08595	COG0561	phosphatase activity
AMBLS11_08610	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AMBLS11_08635	COG1185	polyribonucleotide nucleotidyltransferase activity
AMBLS11_08780	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
AMBLS11_08785	COG1196	nuclear chromosome segregation
AMBLS11_08795	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AMBLS11_08810	COG1132	(ABC) transporter
AMBLS11_08815	COG1663	tetraacyldisaccharide 4'-kinase activity
AMBLS11_08855	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AMBLS11_08860	COG0435	Glutathione S-transferase
AMBLS11_08885	COG0372	Belongs to the citrate synthase family
AMBLS11_08890	COG2009	succinate dehydrogenase
AMBLS11_08895	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AMBLS11_08900	COG1053	succinate dehydrogenase
AMBLS11_08905	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AMBLS11_08910	COG0567	Dehydrogenase, E1 component
AMBLS11_08915	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMBLS11_08950	COG4667	esterase of the alpha-beta hydrolase superfamily
AMBLS11_08975	COG0366	Alpha amylase catalytic
AMBLS11_08990	COG1609	Transcriptional regulator
AMBLS11_09005	COG1028	Short-chain dehydrogenase reductase Sdr
AMBLS11_09010	COG2267	carboxylic ester hydrolase activity
AMBLS11_09020	COG0616	signal peptide processing
AMBLS11_09035	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AMBLS11_09040	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AMBLS11_09045	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMBLS11_09050	COG0386	Belongs to the glutathione peroxidase family
AMBLS11_09055	COG2084	Dehydrogenase
AMBLS11_09065	COG1960	acyl-CoA dehydrogenase activity
AMBLS11_09070	COG1024	Enoyl-CoA hydratase
AMBLS11_09085	COG3083	sulfuric ester hydrolase activity
AMBLS11_09090	COG3082	Protein of unknown function (DUF1414)
AMBLS11_09095	COG3081	Nucleoid-associated protein
AMBLS11_09105	COG1196	nuclear chromosome segregation
AMBLS11_09105	COG0741	lytic transglycosylase activity
AMBLS11_09105	COG0739	heme binding
AMBLS11_09125	COG3275	phosphorelay sensor kinase activity
AMBLS11_09130	COG3279	Response regulator of the LytR AlgR family
AMBLS11_09135	COG0205	6-phosphofructokinase activity
AMBLS11_09145	COG0583	DNA-binding transcription factor activity
AMBLS11_09150	COG4221	oxidoreductase activity
AMBLS11_09175	COG2205	protein histidine kinase activity
AMBLS11_09175	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMBLS11_09205	COG0513	Belongs to the DEAD box helicase family
AMBLS11_09215	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AMBLS11_09220	COG0583	DNA-binding transcription factor activity
AMBLS11_09240	COG1760	l-serine dehydratase
AMBLS11_09265	COG1322	Protein conserved in bacteria
AMBLS11_09270	COG1404	Belongs to the peptidase S8 family
AMBLS11_09275	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AMBLS11_09280	COG0022	dehydrogenase e1 component
AMBLS11_09290	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AMBLS11_09295	COG0515	serine threonine protein kinase
AMBLS11_09300	COG1946	Acyl-CoA thioesterase
AMBLS11_09310	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AMBLS11_09320	COG1956	GAF domain-containing protein
AMBLS11_09335	COG0793	Belongs to the peptidase S41A family
AMBLS11_09340	COG0733	neurotransmitter:sodium symporter activity
AMBLS11_09350	COG0308	aminopeptidase N
AMBLS11_09385	COG0167	dihydroorotate dehydrogenase activity
AMBLS11_09410	COG3130	regulation of translation
AMBLS11_09415	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMBLS11_09425	COG0415	Belongs to the DNA photolyase family
AMBLS11_09430	COG0415	Belongs to the DNA photolyase family
AMBLS11_09435	COG0415	Belongs to the DNA photolyase family
AMBLS11_09440	COG3046	protein related to deoxyribodipyrimidine photolyase
AMBLS11_09455	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMBLS11_09460	COG4974	Belongs to the 'phage' integrase family
AMBLS11_09470	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AMBLS11_09475	COG0589	response to stress
AMBLS11_09485	COG0069	glutamate synthase activity
AMBLS11_09500	COG2193	ferroxidase activity
AMBLS11_09510	COG3278	Belongs to the heme-copper respiratory oxidase family
AMBLS11_09525	COG2010	Cytochrome c
AMBLS11_09550	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMBLS11_09555	COG0589	response to stress
AMBLS11_09560	COG0037	tRNA processing
AMBLS11_09565	COG1752	Esterase of the alpha-beta hydrolase superfamily
AMBLS11_09585	COG1280	lysine exporter protein (LysE YggA)
AMBLS11_09590	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AMBLS11_09595	COG2897	thiosulfate sulfurtransferase activity
AMBLS11_09600	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
AMBLS11_09610	COG4943	cyclic-guanylate-specific phosphodiesterase activity
AMBLS11_09630	COG0582	viral genome integration into host DNA
AMBLS11_09635	COG2003	Belongs to the UPF0758 family
AMBLS11_09695	COG0582	viral genome integration into host DNA
AMBLS11_09705	COG0322	excinuclease ABC activity
AMBLS11_09710	COG2197	response regulator
AMBLS11_09715	COG1741	Belongs to the pirin family
AMBLS11_09720	COG0436	Aminotransferase
AMBLS11_09730	COG3384	dioxygenase
AMBLS11_09735	COG2259	Doxx family
AMBLS11_09740	COG0583	DNA-binding transcription factor activity
AMBLS11_09760	COG0670	Belongs to the BI1 family
AMBLS11_09765	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
AMBLS11_09780	COG2920	part of a sulfur-relay system
AMBLS11_09810	COG4206	TonB-dependent receptor
AMBLS11_09810	COG4206	TonB-dependent receptor
AMBLS11_09825	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AMBLS11_09835	COG1674	ftsk spoiiie
AMBLS11_09835	COG0531	amino acid
AMBLS11_09845	COG0686	Belongs to the AlaDH PNT family
AMBLS11_09850	COG0284	orotidine-5'-phosphate decarboxylase activity
AMBLS11_09855	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
AMBLS11_09870	COG0776	regulation of translation
AMBLS11_09875	COG0539	negative regulation of cytoplasmic translation
AMBLS11_09880	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AMBLS11_09885	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AMBLS11_09890	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AMBLS11_09900	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AMBLS11_09905	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMBLS11_09910	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMBLS11_09915	COG0633	Ferredoxin
AMBLS11_09950	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
AMBLS11_09955	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMBLS11_09965	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AMBLS11_09975	COG4783	chaperone-mediated protein folding
AMBLS11_09985	COG1393	Belongs to the ArsC family
AMBLS11_10020	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AMBLS11_10030	COG1960	acyl-CoA dehydrogenase activity
AMBLS11_10060	COG3769	mannosylglycerate metabolic process
AMBLS11_10065	COG1215	transferase activity, transferring glycosyl groups
AMBLS11_10080	COG0303	'Molybdopterin
AMBLS11_10085	COG0534	Mate efflux family protein
AMBLS11_10090	COG2068	MobA-Related Protein
AMBLS11_10100	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AMBLS11_10105	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AMBLS11_10165	COG3547	Transposase (IS116 IS110 IS902 family)
AMBLS11_10185	COG3547	Transposase (IS116 IS110 IS902 family)
AMBLS11_10330	COG0405	Gamma-glutamyltransferase
AMBLS11_10335	COG1024	Enoyl-CoA hydratase
AMBLS11_10380	COG1448	Aminotransferase
AMBLS11_10395	COG1671	Belongs to the UPF0178 family
AMBLS11_10400	COG1028	Short-chain dehydrogenase reductase Sdr
AMBLS11_10405	COG1028	Short-chain dehydrogenase reductase Sdr
AMBLS11_10410	COG1960	acyl-CoA dehydrogenase activity
AMBLS11_10415	COG2207	Transcriptional regulator
AMBLS11_10415	COG0662	Cupin 2, conserved barrel domain protein
AMBLS11_10430	COG1505	serine-type exopeptidase activity
AMBLS11_10470	COG0596	Alpha beta hydrolase
AMBLS11_10480	COG0716	FMN binding
AMBLS11_10490	COG0735	belongs to the Fur family
AMBLS11_10500	COG1984	allophanate hydrolase subunit 2
AMBLS11_10505	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
AMBLS11_10515	COG2996	Protein conserved in bacteria
AMBLS11_10520	COG1765	OsmC-like protein
AMBLS11_10525	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMBLS11_10550	COG0436	Aminotransferase
AMBLS11_10555	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
AMBLS11_10560	COG0232	Belongs to the dGTPase family. Type 2 subfamily
AMBLS11_10570	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AMBLS11_10590	COG3012	SEC-C Motif Domain Protein
AMBLS11_10595	COG0366	Alpha amylase catalytic
AMBLS11_10605	COG0604	alcohol dehydrogenase
AMBLS11_10615	COG1960	acyl-CoA dehydrogenase activity
AMBLS11_10630	COG4771	TonB-dependent receptor
AMBLS11_10650	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMBLS11_10655	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
AMBLS11_10670	COG0314	molybdopterin synthase activity
AMBLS11_10675	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
AMBLS11_10680	COG0315	cyclic pyranopterin monophosphate synthase activity
AMBLS11_10685	COG0521	Mo-molybdopterin cofactor biosynthetic process
AMBLS11_10690	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AMBLS11_10715	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AMBLS11_10725	COG3268	Saccharopine dehydrogenase
AMBLS11_10730	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMBLS11_10750	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
AMBLS11_10785	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMBLS11_10795	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AMBLS11_10800	COG1074	ATP-dependent DNA helicase activity
AMBLS11_10805	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AMBLS11_10815	COG1022	Amp-dependent synthetase and ligase
AMBLS11_10840	COG0583	DNA-binding transcription factor activity
AMBLS11_10860	COG0640	Transcriptional regulator
AMBLS11_10880	COG2204	response regulator
AMBLS11_10890	COG4251	negative regulation of phosphorylation
AMBLS11_10895	COG0784	Response regulator, receiver
AMBLS11_10900	COG2205	protein histidine kinase activity
AMBLS11_10900	COG0784	Response regulator, receiver
AMBLS11_10950	COG3139	Protein of unknown function (DUF1315)
AMBLS11_10960	COG1115	amino acid carrier protein
AMBLS11_10965	COG2866	Carboxypeptidase
AMBLS11_10985	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
AMBLS11_10995	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AMBLS11_11000	COG1640	4-alpha-glucanotransferase
AMBLS11_11010	COG0676	glucose-6-phosphate 1-epimerase activity
AMBLS11_11020	COG0800	Aldolase
AMBLS11_11030	COG0129	dihydroxy-acid dehydratase activity
AMBLS11_11040	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AMBLS11_11045	COG1737	Transcriptional regulator
AMBLS11_11050	COG0469	pyruvate kinase activity
AMBLS11_11055	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AMBLS11_11075	COG2823	Periplasmic or secreted lipoprotein
AMBLS11_11100	COG3665	Urea carboxylase-associated protein
AMBLS11_11120	COG1028	Short-chain dehydrogenase reductase Sdr
AMBLS11_11125	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
AMBLS11_11135	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AMBLS11_11150	COG2721	sulfolactate sulfo-lyase activity
AMBLS11_11155	COG1904	glucuronate isomerase
AMBLS11_11160	COG0246	Mannitol dehydrogenase
AMBLS11_11165	COG0800	Aldolase
AMBLS11_11170	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMBLS11_11175	COG2755	lipolytic protein G-D-S-L family
AMBLS11_11185	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
AMBLS11_11195	COG4677	pectinesterase activity
AMBLS11_11215	COG2356	endonuclease I
AMBLS11_11225	COG0840	transmembrane signaling receptor activity
AMBLS11_11240	COG0583	DNA-binding transcription factor activity
AMBLS11_11250	COG1979	alcohol dehydrogenase
AMBLS11_11255	COG1902	pentaerythritol trinitrate reductase activity
AMBLS11_11270	COG0784	Response regulator, receiver
AMBLS11_11270	COG3437	response regulator, receiver
AMBLS11_11275	COG4191	Histidine kinase
AMBLS11_11275	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMBLS11_11295	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AMBLS11_11310	COG0471	metal ion transport
AMBLS11_11325	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMBLS11_11325	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMBLS11_11330	COG0668	transmembrane transport
AMBLS11_11335	COG2226	methyltransferase
AMBLS11_11340	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMBLS11_11345	COG0741	lytic transglycosylase activity
AMBLS11_11345	COG1388	LysM domain
AMBLS11_11365	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMBLS11_11370	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMBLS11_11380	COG2268	Band 7 protein
AMBLS11_11385	COG0583	DNA-binding transcription factor activity
AMBLS11_11390	COG1028	Short-chain dehydrogenase reductase Sdr
AMBLS11_11405	COG1733	regulation of RNA biosynthetic process
AMBLS11_11410	COG0604	alcohol dehydrogenase
AMBLS11_11425	COG1063	alcohol dehydrogenase
AMBLS11_11460	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
AMBLS11_11465	COG1286	toxin biosynthetic process
AMBLS11_11470	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
AMBLS11_11475	COG0285	dihydrofolate synthase activity
AMBLS11_11500	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AMBLS11_11520	COG3609	addiction module antidote protein, CC2985 family
AMBLS11_11525	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AMBLS11_11530	COG0318	PFAM AMP-dependent synthetase and ligase
AMBLS11_11535	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMBLS11_11535	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
AMBLS11_11555	COG1119	ATPase activity
AMBLS11_11560	COG2031	fatty acid transporter
AMBLS11_11575	COG0612	Peptidase, M16
AMBLS11_11590	COG3101	peptidyl-lysine hydroxylation
AMBLS11_11615	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMBLS11_11615	COG1902	pentaerythritol trinitrate reductase activity
AMBLS11_11640	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AMBLS11_11650	COG4399	Belongs to the UPF0754 family
AMBLS11_11680	COG2186	Transcriptional regulator
AMBLS11_11690	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
AMBLS11_11695	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AMBLS11_11700	COG2983	Belongs to the UPF0260 family
AMBLS11_11705	COG0179	Fumarylacetoacetate (FAA) hydrolase
AMBLS11_11720	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
AMBLS11_11725	COG0318	PFAM AMP-dependent synthetase and ligase
AMBLS11_11730	COG2267	carboxylic ester hydrolase activity
AMBLS11_11745	COG1214	PFAM Peptidase M22, glycoprotease
AMBLS11_11750	COG1199	ATP-dependent helicase activity
AMBLS11_11775	COG0671	phosphoesterase, PA-phosphatase related
AMBLS11_11835	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AMBLS11_11840	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AMBLS11_11845	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMBLS11_11850	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AMBLS11_11850	COG0131	Imidazoleglycerol-phosphate dehydratase
AMBLS11_11855	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AMBLS11_11870	COG0140	phosphoribosyl-ATP diphosphatase activity
AMBLS11_11870	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AMBLS11_11880	COG2116	formate transmembrane transporter activity
AMBLS11_11885	COG0840	transmembrane signaling receptor activity
AMBLS11_11890	COG0612	Peptidase, M16
AMBLS11_11895	COG0681	Belongs to the peptidase S26 family
AMBLS11_11915	COG0326	Molecular chaperone. Has ATPase activity
AMBLS11_11920	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AMBLS11_11980	COG0582	viral genome integration into host DNA
AMBLS11_11990	COG0789	Transcriptional regulator
AMBLS11_12000	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AMBLS11_12005	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AMBLS11_12015	COG3220	belongs to the UPF0276 family
AMBLS11_12025	COG3710	Transcriptional regulator
AMBLS11_12035	COG4251	negative regulation of phosphorylation
AMBLS11_12035	COG5001	Diguanylate cyclase
AMBLS11_12035	COG2203	Gaf domain
AMBLS11_12035	COG3706	GGDEF domain
AMBLS11_12045	COG1183	phosphatidylcholine synthase activity
AMBLS11_12065	COG0277	FAD linked oxidase domain protein
AMBLS11_12070	COG2963	transposase activity
AMBLS11_12075	COG2801	Transposase and inactivated derivatives
AMBLS11_12080	COG0542	response to heat
AMBLS11_12090	COG0564	pseudouridine synthase activity
AMBLS11_12105	COG1595	DNA-templated transcription, initiation
AMBLS11_12120	COG4221	oxidoreductase activity
AMBLS11_12135	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AMBLS11_12145	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AMBLS11_12155	COG0142	geranyltranstransferase activity
AMBLS11_12165	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AMBLS11_12170	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AMBLS11_12180	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
AMBLS11_12195	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMBLS11_12195	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMBLS11_12215	COG0488	(ABC) transporter
AMBLS11_12225	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
AMBLS11_12235	COG0560	Phosphoserine phosphatase
AMBLS11_12245	COG0084	hydrolase, TatD family'
AMBLS11_12260	COG0571	ribonuclease III activity
AMBLS11_12265	COG0681	Belongs to the peptidase S26 family
AMBLS11_12545	COG1595	DNA-templated transcription, initiation
AMBLS11_12550	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
AMBLS11_12565	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AMBLS11_12600	COG4968	Prepilin-type N-terminal cleavage methylation domain
AMBLS11_12645	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
AMBLS11_12650	COG1047	Peptidyl-prolyl cis-trans
AMBLS11_12660	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AMBLS11_12665	COG0196	riboflavin kinase activity
AMBLS11_12670	COG0728	peptidoglycan biosynthetic process
AMBLS11_12675	COG0268	Binds directly to 16S ribosomal RNA
AMBLS11_12690	COG1028	Short-chain dehydrogenase reductase Sdr
AMBLS11_12695	COG0385	Bile acid
AMBLS11_12720	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMBLS11_12725	COG0776	regulation of translation
AMBLS11_12730	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AMBLS11_12735	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
AMBLS11_12740	COG0740	serine-type endopeptidase activity
AMBLS11_12745	COG0544	peptidyl-prolyl cis-trans isomerase activity
AMBLS11_12760	COG1720	tRNA m6t6A37 methyltransferase activity
AMBLS11_12785	COG0123	including yeast histone deacetylase and acetoin utilization protein
AMBLS11_12810	COG0517	IMP dehydrogenase activity
AMBLS11_12810	COG0516	GMP reductase activity
AMBLS11_12815	COG1570	exodeoxyribonuclease VII activity
AMBLS11_12840	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMBLS11_12845	COG2976	Protein conserved in bacteria
AMBLS11_12865	COG3063	Type IV pilus biogenesis stability protein PilW
AMBLS11_12870	COG0820	rRNA (adenine-C2-)-methyltransferase activity
AMBLS11_12885	COG2166	iron-sulfur cluster assembly
AMBLS11_12900	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AMBLS11_12905	COG0719	Fe-S assembly protein
AMBLS11_12910	COG0396	ATPase activity
AMBLS11_12915	COG0719	Fe-S assembly protein
AMBLS11_12920	COG1104	cysteine desulfurase activity
AMBLS11_12925	COG1959	2 iron, 2 sulfur cluster binding
AMBLS11_12940	COG1045	serine acetyltransferase
AMBLS11_12945	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
AMBLS11_12950	COG0483	inositol monophosphate 1-phosphatase activity
AMBLS11_12960	COG3279	Response regulator of the LytR AlgR family
AMBLS11_12965	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AMBLS11_12970	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AMBLS11_12975	COG1862	Preprotein translocase
AMBLS11_12980	COG0343	queuine tRNA-ribosyltransferase activity
AMBLS11_13000	COG1842	Phage shock protein A
AMBLS11_13025	COG0754	glutathionylspermidine amidase activity
AMBLS11_13040	COG2066	Belongs to the glutaminase family
AMBLS11_13045	COG1785	Belongs to the alkaline phosphatase family
AMBLS11_13080	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMBLS11_13100	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AMBLS11_13105	COG1045	serine acetyltransferase
AMBLS11_13110	COG1215	transferase activity, transferring glycosyl groups
AMBLS11_13125	COG0438	transferase activity, transferring glycosyl groups
AMBLS11_13130	COG0297	glycogen (starch) synthase activity
AMBLS11_13130	COG0438	transferase activity, transferring glycosyl groups
AMBLS11_13135	COG2244	polysaccharide biosynthetic process
AMBLS11_13165	COG0463	Glycosyl transferase, family 2
AMBLS11_13165	COG1216	Glycosyl transferase, family 2
AMBLS11_13200	COG0489	protein tyrosine kinase activity
AMBLS11_13210	COG3267	Type II secretory pathway component ExeA
AMBLS11_13210	COG3409	Peptidoglycan-binding domain 1 protein
AMBLS11_13215	COG2827	Endonuclease containing a URI domain
AMBLS11_13235	COG1560	Kdo2-lipid A biosynthetic process
AMBLS11_13265	COG1960	acyl-CoA dehydrogenase activity
AMBLS11_13285	COG1435	thymidine kinase activity
AMBLS11_13300	COG1609	Transcriptional regulator
AMBLS11_13305	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AMBLS11_13320	COG1082	Xylose isomerase domain protein TIM barrel
AMBLS11_13330	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMBLS11_13370	COG1012	belongs to the aldehyde dehydrogenase family
AMBLS11_13390	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
AMBLS11_13395	COG0789	Transcriptional regulator
AMBLS11_13425	COG1960	acyl-CoA dehydrogenase activity
AMBLS11_13480	COG2080	2 iron, 2 sulfur cluster binding
AMBLS11_13485	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
AMBLS11_13490	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AMBLS11_13510	COG1028	Short-chain dehydrogenase reductase Sdr
AMBLS11_13515	COG4221	oxidoreductase activity
AMBLS11_13520	COG0693	protein deglycase activity
AMBLS11_13525	COG1295	ribonuclease BN
AMBLS11_13545	COG3279	Response regulator of the LytR AlgR family
AMBLS11_13655	COG0514	ATP-dependent DNA helicase (RecQ)
AMBLS11_13680	COG4251	negative regulation of phosphorylation
AMBLS11_13685	COG2133	pyrroloquinoline quinone binding
AMBLS11_13705	COG5002	protein histidine kinase activity
AMBLS11_13755	COG0738	Major facilitator superfamily
AMBLS11_13760	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
AMBLS11_13770	COG2971	BadF BadG BcrA BcrD
AMBLS11_13795	COG0583	DNA-binding transcription factor activity
AMBLS11_13800	COG0589	response to stress
AMBLS11_13805	COG1620	l-lactate permease
AMBLS11_13830	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMBLS11_13835	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMBLS11_13840	COG0006	proline dipeptidase activity
AMBLS11_13845	COG3079	Belongs to the UPF0149 family
AMBLS11_13850	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMBLS11_13865	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AMBLS11_13870	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AMBLS11_13875	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AMBLS11_13895	COG3313	Fe-S protein
AMBLS11_13920	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMBLS11_13925	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMBLS11_13930	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
AMBLS11_13935	COG2186	Transcriptional regulator
AMBLS11_13950	COG3577	Aspartyl protease
AMBLS11_13955	COG0157	Belongs to the NadC ModD family
AMBLS11_13960	COG4969	Belongs to the N-Me-Phe pilin family
AMBLS11_13965	COG1459	type II secretion system
AMBLS11_13970	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
AMBLS11_13975	COG0237	dephospho-CoA kinase activity
AMBLS11_13975	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AMBLS11_13980	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
AMBLS11_13990	COG3608	succinylglutamate desuccinylase aspartoacylase
AMBLS11_13995	COG0494	nUDIX hydrolase
AMBLS11_14005	COG0739	heme binding
AMBLS11_14010	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
AMBLS11_14015	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
AMBLS11_14020	COG0849	cell division
AMBLS11_14025	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AMBLS11_14030	COG1181	Belongs to the D-alanine--D-alanine ligase family
AMBLS11_14045	COG0772	Belongs to the SEDS family
AMBLS11_14050	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AMBLS11_14060	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AMBLS11_14065	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AMBLS11_14070	COG0768	penicillin binding
AMBLS11_14075	COG3116	cell division
AMBLS11_14085	COG2001	Belongs to the MraZ family
AMBLS11_14105	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMBLS11_14110	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMBLS11_14130	COG0678	peroxiredoxin activity
AMBLS11_14130	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AMBLS11_14145	COG3706	GGDEF domain
AMBLS11_14155	COG2204	response regulator
AMBLS11_14160	COG5002	protein histidine kinase activity
AMBLS11_14180	COG0668	transmembrane transport
AMBLS11_14185	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AMBLS11_14190	COG0189	ligase activity
AMBLS11_14195	COG1678	Uncharacterized ACR, COG1678
AMBLS11_14200	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AMBLS11_14225	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
AMBLS11_14230	COG0762	integral membrane protein
AMBLS11_14240	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMBLS11_14240	COG1902	pentaerythritol trinitrate reductase activity
AMBLS11_14270	COG1764	response to oxidative stress
AMBLS11_14280	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AMBLS11_14290	COG2814	Major facilitator Superfamily
AMBLS11_14320	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AMBLS11_14325	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
AMBLS11_14330	COG0083	homoserine kinase activity
AMBLS11_14345	COG0583	DNA-binding transcription factor activity
AMBLS11_14355	COG2197	response regulator
AMBLS11_14360	COG4585	Histidine kinase
AMBLS11_14375	COG0640	Transcriptional regulator
AMBLS11_14385	COG0431	NADPH-dependent FMN reductase
AMBLS11_14390	COG0798	PFAM Bile acid sodium symporter
AMBLS11_14395	COG2801	Transposase and inactivated derivatives
AMBLS11_14400	COG2963	transposase activity
AMBLS11_14405	COG2201	protein-glutamate methylesterase activity
AMBLS11_14410	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
AMBLS11_14415	COG0745	RESPONSE REGULATOR receiver
AMBLS11_14420	COG3850	Histidine kinase
AMBLS11_14420	COG5002	protein histidine kinase activity
AMBLS11_14440	COG2515	1-aminocyclopropane-1-carboxylate deaminase
AMBLS11_14465	COG1748	Saccharopine dehydrogenase
AMBLS11_14485	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
AMBLS11_14490	COG3107	peptidoglycan biosynthetic process
AMBLS11_14510	COG2823	Periplasmic or secreted lipoprotein
AMBLS11_14530	COG4585	Histidine kinase
AMBLS11_14535	COG2197	response regulator
AMBLS11_14550	COG4771	TonB-dependent receptor
AMBLS11_14560	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
AMBLS11_14565	COG0372	Belongs to the citrate synthase family
AMBLS11_14570	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AMBLS11_14575	COG2828	Protein conserved in bacteria
AMBLS11_14580	COG2203	Gaf domain
AMBLS11_14580	COG2199	diguanylate cyclase activity
AMBLS11_14600	COG0784	Response regulator, receiver
AMBLS11_14600	COG5002	protein histidine kinase activity
AMBLS11_14600	COG2198	Histidine kinase
AMBLS11_14615	COG0070	glutamate synthase
AMBLS11_14615	COG0067	glutamate synthase
AMBLS11_14615	COG0069	glutamate synthase activity
AMBLS11_14620	COG0493	'glutamate synthase
AMBLS11_14635	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AMBLS11_14640	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
AMBLS11_14645	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AMBLS11_14665	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMBLS11_14670	COG5507	3-demethylubiquinone-9 3-methyltransferase
AMBLS11_14690	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AMBLS11_14695	COG1196	nuclear chromosome segregation
AMBLS11_14695	COG0741	lytic transglycosylase activity
AMBLS11_14695	COG0739	heme binding
AMBLS11_14700	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AMBLS11_14710	COG0738	Major facilitator superfamily
AMBLS11_14720	COG1902	pentaerythritol trinitrate reductase activity
AMBLS11_14735	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AMBLS11_14740	COG0625	glutathione transferase activity
AMBLS11_14750	COG2326	polyphosphate kinase activity
AMBLS11_14760	COG2894	cell division
AMBLS11_14765	COG0850	regulation of cytokinetic process
AMBLS11_14815	COG1914	H( )-stimulated, divalent metal cation uptake system
AMBLS11_14820	COG0436	Aminotransferase
AMBLS11_14840	COG0174	glutamine synthetase
AMBLS11_14850	COG3852	Histidine kinase
AMBLS11_14855	COG2204	response regulator
AMBLS11_14860	COG3437	response regulator, receiver
AMBLS11_14865	COG0204	Acyl-transferase
AMBLS11_14885	COG3706	GGDEF domain
AMBLS11_14910	COG0525	valine-tRNA ligase activity
AMBLS11_14915	COG2927	DNA polymerase III (CHI subunit)
AMBLS11_14920	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AMBLS11_14925	COG0795	lipopolysaccharide-transporting ATPase activity
AMBLS11_14930	COG0795	lipopolysaccharide-transporting ATPase activity
AMBLS11_14975	COG1733	regulation of RNA biosynthetic process
AMBLS11_14990	COG0625	glutathione transferase activity
AMBLS11_15010	COG3459	Glycosyltransferase 36 associated
AMBLS11_15025	COG0330	HflC and HflK could
AMBLS11_15030	COG2199	diguanylate cyclase activity
AMBLS11_15050	COG0583	DNA-binding transcription factor activity
AMBLS11_15065	COG0784	Response regulator, receiver
AMBLS11_15065	COG2198	Histidine kinase
AMBLS11_15065	COG2205	protein histidine kinase activity
AMBLS11_15065	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMBLS11_15075	COG0628	permease
AMBLS11_15090	COG1063	alcohol dehydrogenase
AMBLS11_15100	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMBLS11_15110	COG0642	Histidine kinase
AMBLS11_15135	COG0697	spore germination
AMBLS11_15160	COG1971	Probably functions as a manganese efflux pump
AMBLS11_15170	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
AMBLS11_15190	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
AMBLS11_15195	COG3706	GGDEF domain
AMBLS11_15200	COG0679	Auxin Efflux Carrier
AMBLS11_15230	COG1131	(ABC) transporter
AMBLS11_15240	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AMBLS11_15290	COG2205	protein histidine kinase activity
AMBLS11_15300	COG0348	domain, Protein
AMBLS11_15300	COG3901	Regulator of nitric oxide reductase transcription
AMBLS11_15310	COG2197	response regulator
AMBLS11_15355	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AMBLS11_15360	COG1304	FMN binding
AMBLS11_15365	COG0277	FAD linked oxidase domain protein
AMBLS11_15375	COG1462	curli production assembly transport component CsgG
AMBLS11_15405	COG2197	response regulator
AMBLS11_15410	COG4585	Histidine kinase
AMBLS11_15420	COG0513	Belongs to the DEAD box helicase family
AMBLS11_15425	COG3264	Mechanosensitive ion channel
AMBLS11_15425	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
AMBLS11_15445	COG2199	diguanylate cyclase activity
AMBLS11_15445	COG2200	EAL domain
AMBLS11_15445	COG2202	Pas domain
AMBLS11_15470	COG0730	response to heat
AMBLS11_15490	COG4191	Histidine kinase
AMBLS11_15500	COG0417	DNA replication proofreading
AMBLS11_15510	COG0318	PFAM AMP-dependent synthetase and ligase
AMBLS11_15540	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMBLS11_15550	COG1573	uracil-dna glycosylase
AMBLS11_15555	COG3300	MHYT domain
AMBLS11_15555	COG5001	Diguanylate cyclase
AMBLS11_15575	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AMBLS11_15595	COG1983	PspC domain protein
AMBLS11_15600	COG1842	Phage shock protein A
AMBLS11_15610	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AMBLS11_15635	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AMBLS11_15645	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
AMBLS11_15650	COG0204	Acyl-transferase
AMBLS11_15655	COG0204	Acyl-transferase
AMBLS11_15660	COG0668	transmembrane transport
AMBLS11_15675	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMBLS11_15680	COG0733	neurotransmitter:sodium symporter activity
AMBLS11_15695	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMBLS11_15710	COG0716	FMN binding
AMBLS11_15720	COG0848	biopolymer transport protein
AMBLS11_15735	COG0457	Tetratricopeptide repeat
AMBLS11_15740	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
AMBLS11_15765	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
AMBLS11_15770	COG0702	epimerase
AMBLS11_15790	COG5002	protein histidine kinase activity
AMBLS11_15790	COG5001	Diguanylate cyclase
AMBLS11_15800	COG1574	metal-dependent hydrolase with the TIM-barrel fold
AMBLS11_15810	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMBLS11_15820	COG0583	DNA-binding transcription factor activity
AMBLS11_15825	COG0121	glutamine amidotransferase
AMBLS11_15840	COG4682	membrane
AMBLS11_15870	COG4628	conserved protein (DUF2132)
AMBLS11_15885	COG1609	Transcriptional regulator
AMBLS11_15890	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMBLS11_15900	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AMBLS11_15915	COG1477	protein flavinylation
AMBLS11_15920	COG2871	sodium ion transport
AMBLS11_15925	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AMBLS11_15930	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AMBLS11_15935	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AMBLS11_15940	COG1805	sodium ion transport
AMBLS11_15945	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AMBLS11_15950	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AMBLS11_15955	COG0545	Peptidyl-prolyl cis-trans isomerase
AMBLS11_15960	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
AMBLS11_15970	COG0039	L-malate dehydrogenase activity
AMBLS11_15975	COG1438	arginine binding
AMBLS11_16000	COG0572	uridine kinase
AMBLS11_16005	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AMBLS11_16020	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
AMBLS11_16030	COG0745	RESPONSE REGULATOR receiver
AMBLS11_16030	COG3706	GGDEF domain
AMBLS11_16040	COG0516	GMP reductase activity
AMBLS11_16040	COG0517	IMP dehydrogenase activity
AMBLS11_16045	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AMBLS11_16065	COG0189	ligase activity
AMBLS11_16075	COG0189	ligase activity
AMBLS11_16075	COG4067	protein conserved in archaea
AMBLS11_16100	COG0667	Aldo Keto reductase
AMBLS11_16170	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
AMBLS11_16180	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AMBLS11_16185	COG0840	transmembrane signaling receptor activity
AMBLS11_16215	COG0583	DNA-binding transcription factor activity
AMBLS11_16235	COG1216	Glycosyl transferase, family 2
AMBLS11_16235	COG0438	transferase activity, transferring glycosyl groups
AMBLS11_16275	COG0463	Glycosyl transferase, family 2
AMBLS11_16280	COG1215	transferase activity, transferring glycosyl groups
AMBLS11_16290	COG1215	transferase activity, transferring glycosyl groups
AMBLS11_16300	COG0110	maltose O-acetyltransferase activity
AMBLS11_16310	COG0463	Glycosyl transferase, family 2
AMBLS11_16325	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AMBLS11_16340	COG0202	RNA polymerase activity
AMBLS11_16365	COG0201	protein transport
AMBLS11_16385	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
AMBLS11_16420	COG0784	Response regulator, receiver
AMBLS11_16420	COG5002	protein histidine kinase activity
AMBLS11_16435	COG2801	Transposase and inactivated derivatives
AMBLS11_16440	COG2963	transposase activity
AMBLS11_16450	COG0557	exoribonuclease II activity
AMBLS11_16470	COG4771	TonB-dependent receptor
AMBLS11_16485	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
AMBLS11_16515	COG2234	aminopeptidase activity
AMBLS11_16525	COG4251	negative regulation of phosphorylation
AMBLS11_16535	COG1271	oxidase subunit
AMBLS11_16540	COG1294	oxidase, subunit
AMBLS11_16550	COG1522	sequence-specific DNA binding
AMBLS11_16560	COG1278	Cold shock
AMBLS11_16565	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AMBLS11_16575	COG2226	methyltransferase
AMBLS11_16585	COG0339	signal peptide processing
AMBLS11_16590	COG2201	protein-glutamate methylesterase activity
AMBLS11_16610	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMBLS11_16615	COG0243	molybdopterin cofactor binding
AMBLS11_16630	COG4946	Tricorn protease homolog
AMBLS11_16630	COG0823	Involved in the tonB-independent uptake of proteins
AMBLS11_16630	COG1506	peptidase
AMBLS11_16640	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMBLS11_16650	COG2197	response regulator
AMBLS11_16680	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
AMBLS11_16690	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AMBLS11_16695	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AMBLS11_16715	COG0281	malic enzyme
AMBLS11_16725	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AMBLS11_16755	COG0456	acetyltransferase
AMBLS11_16765	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
AMBLS11_16770	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
AMBLS11_16775	COG2177	Part of the ABC transporter FtsEX involved in
AMBLS11_16780	COG2884	Cell division ATP-binding protein ftsE
AMBLS11_16785	COG0552	protein localization to endoplasmic reticulum
AMBLS11_16790	COG0742	ribosomal rna small subunit methyltransferase
AMBLS11_16800	COG2095	MarC family integral membrane protein
AMBLS11_16810	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AMBLS11_16820	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AMBLS11_16825	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMBLS11_16830	COG0617	tRNA 3'-terminal CCA addition
AMBLS11_16835	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AMBLS11_16850	COG0076	glutamate decarboxylase activity
AMBLS11_16865	COG0842	Transport permease protein
AMBLS11_16870	COG1131	(ABC) transporter
AMBLS11_16875	COG0745	RESPONSE REGULATOR receiver
AMBLS11_16880	COG2205	protein histidine kinase activity
AMBLS11_16890	COG1253	flavin adenine dinucleotide binding
AMBLS11_16895	COG0701	Predicted permease
AMBLS11_16900	COG1966	Carbon starvation protein
AMBLS11_16950	COG0848	biopolymer transport protein
AMBLS11_16960	COG0811	peptide transport
AMBLS11_16980	COG3128	pkhd-type hydroxylase
AMBLS11_16985	COG4774	siderophore transport
AMBLS11_17010	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AMBLS11_17015	COG0049	tRNA binding
AMBLS11_17020	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AMBLS11_17025	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AMBLS11_17030	COG0085	RNA polymerase activity
AMBLS11_17040	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AMBLS11_17045	COG0081	regulation of translation
AMBLS11_17050	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AMBLS11_17055	COG0250	Participates in transcription elongation, termination and antitermination
AMBLS11_17060	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AMBLS11_17065	COG1132	(ABC) transporter
AMBLS11_17070	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMBLS11_17075	COG3590	peptidase
AMBLS11_17090	COG0513	Belongs to the DEAD box helicase family
AMBLS11_17100	COG0418	dihydroorotase activity
AMBLS11_17105	COG3040	lipid binding
AMBLS11_17110	COG4989	oxidoreductase activity
AMBLS11_17115	COG0346	lactoylglutathione lyase activity
AMBLS11_17120	COG0668	transmembrane transport
AMBLS11_17140	COG0302	gtp cyclohydrolase
AMBLS11_17150	COG2957	Belongs to the agmatine deiminase family
AMBLS11_17155	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMBLS11_17165	COG1201	RNA secondary structure unwinding
AMBLS11_17190	COG1793	dna ligase
AMBLS11_17195	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMBLS11_17200	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMBLS11_17215	COG0625	glutathione transferase activity
AMBLS11_17220	COG0625	glutathione transferase activity
AMBLS11_17230	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
AMBLS11_17235	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AMBLS11_17245	COG1012	belongs to the aldehyde dehydrogenase family
AMBLS11_17250	COG0028	Belongs to the TPP enzyme family
AMBLS11_17260	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
AMBLS11_17275	COG0330	HflC and HflK could
AMBLS11_17280	COG0330	HflC and HflK could
AMBLS11_17285	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AMBLS11_17290	COG1923	regulation of RNA biosynthetic process
AMBLS11_17295	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AMBLS11_17300	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AMBLS11_17315	COG0802	atpase or kinase
AMBLS11_17320	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AMBLS11_17320	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AMBLS11_17325	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AMBLS11_17335	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
AMBLS11_17345	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
AMBLS11_17350	COG0735	belongs to the Fur family
AMBLS11_17360	COG0432	Pfam Uncharacterised protein family UPF0047
AMBLS11_17370	COG2801	Transposase and inactivated derivatives
AMBLS11_17375	COG2963	transposase activity
AMBLS11_17380	COG0305	Participates in initiation and elongation during chromosome replication
AMBLS11_17405	COG2258	MOSC domain
AMBLS11_17440	COG2205	protein histidine kinase activity
AMBLS11_17450	COG1136	(ABC) transporter
AMBLS11_17460	COG0840	transmembrane signaling receptor activity
AMBLS11_17465	COG5002	protein histidine kinase activity
AMBLS11_17470	COG0840	transmembrane signaling receptor activity
AMBLS11_17475	COG2855	membrane
AMBLS11_17515	COG1472	Belongs to the glycosyl hydrolase 3 family
AMBLS11_17525	COG2723	6-phospho-beta-galactosidase activity
AMBLS11_17530	COG1609	Transcriptional regulator
AMBLS11_17535	COG0477	Major facilitator Superfamily
AMBLS11_17535	COG2814	Major facilitator Superfamily
AMBLS11_17540	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
AMBLS11_17545	COG4988	ABC transporter
AMBLS11_17550	COG4890	Cyd operon protein YbgT
AMBLS11_17555	COG1294	oxidase, subunit
AMBLS11_17595	COG4319	ketosteroid isomerase
AMBLS11_17600	COG1469	GTP cyclohydrolase I activity
AMBLS11_17645	COG3237	CsbD-like
AMBLS11_17660	COG1595	DNA-templated transcription, initiation
AMBLS11_17690	COG0596	Alpha beta hydrolase
AMBLS11_17690	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMBLS11_17720	COG1252	NADH dehydrogenase
AMBLS11_17725	COG4206	TonB-dependent receptor
AMBLS11_17740	COG0583	DNA-binding transcription factor activity
AMBLS11_17745	COG2067	long-chain fatty acid transport protein
AMBLS11_17750	COG2130	NADP-dependent
AMBLS11_17755	COG2203	Gaf domain
AMBLS11_17755	COG3706	GGDEF domain
AMBLS11_17755	COG4251	negative regulation of phosphorylation
AMBLS11_17755	COG5001	Diguanylate cyclase
AMBLS11_17760	COG0784	Response regulator, receiver
AMBLS11_17760	COG2205	protein histidine kinase activity
AMBLS11_17770	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMBLS11_17775	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMBLS11_17780	COG1349	DNA-binding transcription factor activity
AMBLS11_17785	COG0673	inositol 2-dehydrogenase activity
AMBLS11_17795	COG2199	diguanylate cyclase activity
AMBLS11_17795	COG2203	Gaf domain
AMBLS11_17800	COG0697	spore germination
AMBLS11_17805	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AMBLS11_17810	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
AMBLS11_17815	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AMBLS11_17820	COG1166	arginine decarboxylase activity
AMBLS11_17830	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
AMBLS11_17835	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AMBLS11_17840	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AMBLS11_17910	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMBLS11_17920	COG0109	protoheme IX farnesyltransferase activity
AMBLS11_17940	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AMBLS11_17965	COG3866	Pectate lyase
AMBLS11_17975	COG2801	Transposase and inactivated derivatives
AMBLS11_17980	COG2963	transposase activity
AMBLS11_18020	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
AMBLS11_18055	COG1324	tolerance protein
AMBLS11_18060	COG4232	protein-disulfide reductase activity
AMBLS11_18065	COG0739	heme binding
AMBLS11_18070	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AMBLS11_18075	COG0511	ligase activity, forming carbon-carbon bonds
AMBLS11_18080	COG0439	Biotin carboxylase
AMBLS11_18130	COG0154	amidase activity
AMBLS11_18145	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AMBLS11_18150	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
AMBLS11_18165	COG0151	Belongs to the GarS family
AMBLS11_18175	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMBLS11_18180	COG3954	Phosphoribulokinase
AMBLS11_18190	COG0745	RESPONSE REGULATOR receiver
AMBLS11_18205	COG1501	Belongs to the glycosyl hydrolase 31 family
AMBLS11_18215	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AMBLS11_18225	COG3031	protein transport across the cell outer membrane
AMBLS11_18235	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AMBLS11_18240	COG1459	type II secretion system
AMBLS11_18245	COG2165	general secretion pathway protein
AMBLS11_18255	COG2165	general secretion pathway protein
AMBLS11_18260	COG4795	General secretion pathway protein
AMBLS11_18275	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
AMBLS11_18295	COG1012	belongs to the aldehyde dehydrogenase family
AMBLS11_18305	COG1011	Hydrolase
AMBLS11_18310	COG0494	nUDIX hydrolase
AMBLS11_18315	COG1218	3'(2'),5'-bisphosphate nucleotidase
AMBLS11_18330	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
AMBLS11_18340	COG3089	Belongs to the UPF0270 family
AMBLS11_18345	COG0429	hydrolase of the alpha beta-hydrolase fold
AMBLS11_18355	COG0488	(ABC) transporter
AMBLS11_18385	COG0545	Peptidyl-prolyl cis-trans isomerase
AMBLS11_18395	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMBLS11_18400	COG2183	response to ionizing radiation
AMBLS11_18425	COG1609	Transcriptional regulator
AMBLS11_18425	COG2207	Transcriptional regulator
AMBLS11_18430	COG2211	Major facilitator Superfamily
AMBLS11_18460	COG3693	PFAM glycoside hydrolase, family 10
AMBLS11_18465	COG0667	Aldo Keto reductase
AMBLS11_18470	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AMBLS11_18475	COG2115	Belongs to the xylose isomerase family
AMBLS11_18480	COG1070	Carbohydrate kinase
AMBLS11_18495	COG1472	Belongs to the glycosyl hydrolase 3 family
AMBLS11_18500	COG0477	Major facilitator Superfamily
AMBLS11_18540	COG0596	Alpha beta hydrolase
AMBLS11_18545	COG1040	competence protein
AMBLS11_18565	COG1794	racemase activity, acting on amino acids and derivatives
AMBLS11_18580	COG0534	Mate efflux family protein
AMBLS11_18595	COG1999	signal sequence binding
AMBLS11_18600	COG0109	protoheme IX farnesyltransferase activity
AMBLS11_18605	COG1612	heme a metabolic process
AMBLS11_18630	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
AMBLS11_18635	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMBLS11_18640	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AMBLS11_18655	COG3706	GGDEF domain
AMBLS11_18670	COG0129	dihydroxy-acid dehydratase activity
AMBLS11_18680	COG0606	chelatase, subunit chli
AMBLS11_18685	COG0583	DNA-binding transcription factor activity
AMBLS11_18695	COG2814	Major facilitator Superfamily
AMBLS11_18705	COG0729	surface antigen
AMBLS11_18710	COG2911	Protein conserved in bacteria
AMBLS11_18735	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMBLS11_18745	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AMBLS11_18765	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AMBLS11_18790	COG1228	amidohydrolase
AMBLS11_18820	COG0425	Belongs to the sulfur carrier protein TusA family
AMBLS11_18870	COG2211	Major facilitator Superfamily
AMBLS11_18875	COG1609	Transcriptional regulator
AMBLS11_18895	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
AMBLS11_18895	COG2199	diguanylate cyclase activity
AMBLS11_18925	COG0355	proton-transporting ATP synthase activity, rotational mechanism
AMBLS11_18945	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AMBLS11_18950	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AMBLS11_18970	COG1475	DNA binding
AMBLS11_18975	COG1192	Involved in chromosome partitioning
AMBLS11_19000	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AMBLS11_19005	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
AMBLS11_19015	COG0706	membrane insertase activity
AMBLS11_19020	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
AMBLS11_19025	COG0594	ribonuclease P activity