locus-tag class description AMEC673_00005 PF00308 Bacterial dnaA protein AMEC673_00005 PF08299 Bacterial dnaA protein helix-turn-helix AMEC673_00005 PF11638 DnaA N-terminal domain AMEC673_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AMEC673_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AMEC673_00010 PF02767 DNA polymerase III beta subunit, central domain AMEC673_00015 PF02463 RecF/RecN/SMC N terminal domain AMEC673_00020 PF00204 DNA gyrase B AMEC673_00020 PF00986 DNA gyrase B subunit, carboxyl terminus AMEC673_00020 PF18053 DNA gyrase B subunit insert domain AMEC673_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_00020 PF01751 Toprim domain AMEC673_00040 PF02092 Glycyl-tRNA synthetase beta subunit AMEC673_00040 PF05746 DALR anticodon binding domain AMEC673_00045 PF02091 Glycyl-tRNA synthetase alpha subunit AMEC673_00050 PF03352 Methyladenine glycosylase AMEC673_00060 PF04220 Der GTPase activator (YihI) AMEC673_00070 PF00034 Cytochrome c AMEC673_00075 PF01926 50S ribosome-binding GTPase AMEC673_00080 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMEC673_00080 PF01612 3'-5' exonuclease AMEC673_00080 PF00476 DNA polymerase family A AMEC673_00080 PF01367 5'-3' exonuclease, C-terminal SAM fold AMEC673_00090 PF02386 Cation transport protein AMEC673_00095 PF02254 TrkA-N domain AMEC673_00095 PF02080 TrkA-C domain AMEC673_00100 PF01029 NusB family AMEC673_00100 PF01189 16S rRNA methyltransferase RsmB/F AMEC673_00105 PF02911 Formyl transferase, C-terminal domain AMEC673_00105 PF00551 Formyl transferase AMEC673_00110 PF01327 Polypeptide deformylase AMEC673_00120 PF17782 DprA winged helix domain AMEC673_00120 PF02481 DNA recombination-mediator protein A AMEC673_00125 PF04361 Protein of unknown function (DUF494) AMEC673_00135 PF01300 Telomere recombination AMEC673_00140 PF01218 Coproporphyrinogen III oxidase AMEC673_00145 PF03922 OmpW family AMEC673_00155 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMEC673_00155 PF01488 Shikimate / quinate 5-dehydrogenase AMEC673_00155 PF08501 Shikimate dehydrogenase substrate binding domain AMEC673_00160 PF00132 Bacterial transferase hexapeptide (six repeats) AMEC673_00185 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMEC673_00185 PF14579 Helix-hairpin-helix motif AMEC673_00185 PF02811 PHP domain AMEC673_00185 PF01336 OB-fold nucleic acid binding domain AMEC673_00185 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMEC673_00215 PF02225 PA domain AMEC673_00215 PF04389 Peptidase family M28 AMEC673_00220 PF00440 Bacterial regulatory proteins, tetR family AMEC673_00225 PF02441 Flavoprotein AMEC673_00225 PF04127 DNA / pantothenate metabolism flavoprotein AMEC673_00230 PF04002 RadC-like JAB domain AMEC673_00250 PF06082 Exopolysaccharide biosynthesis protein YbjH AMEC673_00255 PF00830 Ribosomal L28 family AMEC673_00260 PF00471 Ribosomal protein L33 AMEC673_00270 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMEC673_00270 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMEC673_00270 PF06827 Zinc finger found in FPG and IleRS AMEC673_00275 PF01467 Cytidylyltransferase-like AMEC673_00295 PF03707 Bacterial signalling protein N terminal repeat AMEC673_00295 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_00295 PF00563 EAL domain AMEC673_00300 PF00155 Aminotransferase class I and II AMEC673_00305 PF08240 Alcohol dehydrogenase GroES-like domain AMEC673_00305 PF00107 Zinc-binding dehydrogenase AMEC673_00310 PF00581 Rhodanese-like domain AMEC673_00315 PF01694 Rhomboid family AMEC673_00315 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AMEC673_00325 PF04345 Chorismate lyase AMEC673_00330 PF01040 UbiA prenyltransferase family AMEC673_00335 PF04380 Membrane fusogenic activity AMEC673_00340 PF00580 UvrD/REP helicase N-terminal domain AMEC673_00340 PF13361 UvrD-like helicase C-terminal domain AMEC673_00345 PF03707 Bacterial signalling protein N terminal repeat AMEC673_00345 PF00563 EAL domain AMEC673_00345 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_00350 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMEC673_00360 PF02028 BCCT, betaine/carnitine/choline family transporter AMEC673_00400 PF05840 Bacteriophage replication gene A protein (GPA) AMEC673_00430 PF00589 Phage integrase family AMEC673_00445 PF13649 Methyltransferase domain AMEC673_00450 PF07715 TonB-dependent Receptor Plug Domain AMEC673_00450 PF00593 TonB dependent receptor AMEC673_00465 PF02770 Acyl-CoA dehydrogenase, middle domain AMEC673_00465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMEC673_00465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMEC673_00470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_00470 PF03466 LysR substrate binding domain AMEC673_00475 PF00753 Metallo-beta-lactamase superfamily AMEC673_00480 PF04317 YcjX-like family, DUF463 AMEC673_00495 PF04055 Radical SAM superfamily AMEC673_00495 PF06968 Biotin and Thiamin Synthesis associated domain AMEC673_00500 PF05690 Thiazole biosynthesis protein ThiG AMEC673_00510 PF00899 ThiF family AMEC673_00515 PF02581 Thiamine monophosphate synthase AMEC673_00520 PF01964 Radical SAM ThiC family AMEC673_00520 PF13667 ThiC-associated domain AMEC673_00525 PF07719 Tetratricopeptide repeat AMEC673_00525 PF07219 HemY protein N-terminus AMEC673_00530 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AMEC673_00535 PF02602 Uroporphyrinogen-III synthase HemD AMEC673_00540 PF03900 Porphobilinogen deaminase, C-terminal domain AMEC673_00540 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMEC673_00545 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_00545 PF00072 Response regulator receiver domain AMEC673_00555 PF00625 Guanylate kinase AMEC673_00560 PF01192 RNA polymerase Rpb6 AMEC673_00565 PF02824 TGS domain AMEC673_00565 PF13291 ACT domain AMEC673_00565 PF04607 Region found in RelA / SpoT proteins AMEC673_00570 PF01042 Endoribonuclease L-PSP AMEC673_00575 PF00588 SpoU rRNA Methylase family AMEC673_00575 PF12105 SpoU, rRNA methylase, C-terminal AMEC673_00580 PF17191 RecG wedge domain AMEC673_00580 PF00270 DEAD/DEAH box helicase AMEC673_00580 PF00271 Helicase conserved C-terminal domain AMEC673_00585 PF04445 Putative SAM-dependent methyltransferase AMEC673_00590 PF08534 Redoxin AMEC673_00605 PF00528 Binding-protein-dependent transport system inner membrane component AMEC673_00610 PF00005 ABC transporter AMEC673_00610 PF08402 TOBE domain AMEC673_00620 PF03922 OmpW family AMEC673_00635 PF04940 Sensors of blue-light using FAD AMEC673_00635 PF00563 EAL domain AMEC673_00640 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_00645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_00645 PF03466 LysR substrate binding domain AMEC673_00650 PF01810 LysE type translocator AMEC673_00655 PF00893 Small Multidrug Resistance protein AMEC673_00670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMEC673_00670 PF00529 HlyD membrane-fusion protein of T1SS AMEC673_00675 PF00873 AcrB/AcrD/AcrF family AMEC673_00685 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AMEC673_00685 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AMEC673_00690 PF00850 Histone deacetylase domain AMEC673_00695 PF00462 Glutaredoxin AMEC673_00705 PF12729 Four helix bundle sensory module for signal transduction AMEC673_00705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_00705 PF00672 HAMP domain AMEC673_00715 PF11737 Protein of unknown function (DUF3300) AMEC673_00720 PF00925 GTP cyclohydrolase II AMEC673_00725 PF08448 PAS fold AMEC673_00725 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_00725 PF00563 EAL domain AMEC673_00740 PF00270 DEAD/DEAH box helicase AMEC673_00740 PF00271 Helicase conserved C-terminal domain AMEC673_00740 PF00570 HRDC domain AMEC673_00740 PF16124 RecQ zinc-binding AMEC673_00740 PF09382 RQC domain AMEC673_00745 PF03061 Thioesterase superfamily AMEC673_00750 PF03448 MgtE intracellular N domain AMEC673_00750 PF00571 CBS domain AMEC673_00750 PF01769 Divalent cation transporter AMEC673_00755 PF00892 EamA-like transporter family AMEC673_00760 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_00760 PF08448 PAS fold AMEC673_00765 PF13361 UvrD-like helicase C-terminal domain AMEC673_00765 PF00580 UvrD/REP helicase N-terminal domain AMEC673_00770 PF06426 Serine acetyltransferase, N-terminal AMEC673_00770 PF00132 Bacterial transferase hexapeptide (six repeats) AMEC673_00775 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_00780 PF13419 Haloacid dehalogenase-like hydrolase AMEC673_00795 PF01678 Diaminopimelate epimerase AMEC673_00800 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMEC673_00800 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMEC673_00815 PF01569 PAP2 superfamily AMEC673_00820 PF03737 Aldolase/RraA AMEC673_00835 PF02441 Flavoprotein AMEC673_00840 PF08245 Mur ligase middle domain AMEC673_00840 PF02875 Mur ligase family, glutamate ligase domain AMEC673_00840 PF01225 Mur ligase family, catalytic domain AMEC673_00845 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AMEC673_00850 PF00719 Inorganic pyrophosphatase AMEC673_00895 PF00005 ABC transporter AMEC673_00895 PF17755 UvrA DNA-binding domain AMEC673_00895 PF17760 UvrA interaction domain AMEC673_00900 PF07690 Major Facilitator Superfamily AMEC673_00905 PF13419 Haloacid dehalogenase-like hydrolase AMEC673_00925 PF13006 Insertion element 4 transposase N-terminal AMEC673_00925 PF01609 Transposase DDE domain AMEC673_00930 PF00356 Bacterial regulatory proteins, lacI family AMEC673_00935 PF01263 Aldose 1-epimerase AMEC673_00940 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AMEC673_00940 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AMEC673_00945 PF08544 GHMP kinases C terminal AMEC673_00945 PF00288 GHMP kinases N terminal domain AMEC673_00945 PF10509 Galactokinase galactose-binding signature AMEC673_00950 PF00474 Sodium:solute symporter family AMEC673_00955 PF00436 Single-strand binding protein family AMEC673_00970 PF16875 Glycosyl hydrolase family 36 N-terminal domain AMEC673_00970 PF16874 Glycosyl hydrolase family 36 C-terminal domain AMEC673_00975 PF00474 Sodium:solute symporter family AMEC673_00985 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMEC673_00985 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMEC673_00990 PF00455 DeoR C terminal sensor domain AMEC673_00990 PF08220 DeoR-like helix-turn-helix domain AMEC673_00995 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMEC673_00995 PF01266 FAD dependent oxidoreductase AMEC673_01030 PF03958 Bacterial type II/III secretion system short domain AMEC673_01030 PF00263 Bacterial type II and III secretion system protein AMEC673_01035 PF01471 Putative peptidoglycan binding domain AMEC673_01035 PF13401 AAA domain AMEC673_01045 PF00437 Type II/IV secretion system protein AMEC673_01050 PF00482 Type II secretion system (T2SS), protein F AMEC673_01060 PF00114 Pilin (bacterial filament) AMEC673_01060 PF07963 Prokaryotic N-terminal methylation motif AMEC673_01065 PF00114 Pilin (bacterial filament) AMEC673_01065 PF07963 Prokaryotic N-terminal methylation motif AMEC673_01100 PF04085 rod shape-determining protein MreC AMEC673_01105 PF04093 rod shape-determining protein MreD AMEC673_01110 PF02545 Maf-like protein AMEC673_01115 PF00575 S1 RNA binding domain AMEC673_01115 PF10150 Ribonuclease E/G family AMEC673_01125 PF00795 Carbon-nitrogen hydrolase AMEC673_01130 PF01523 Putative modulator of DNA gyrase AMEC673_01140 PF04751 Protein of unknown function (DUF615) AMEC673_01145 PF01523 Putative modulator of DNA gyrase AMEC673_01155 PF02929 Beta galactosidase small chain AMEC673_01155 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMEC673_01155 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMEC673_01155 PF00703 Glycosyl hydrolases family 2 AMEC673_01155 PF16353 Domain of unknown function(DUF4981) AMEC673_01160 PF00486 Transcriptional regulatory protein, C terminal AMEC673_01160 PF00072 Response regulator receiver domain AMEC673_01165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_01165 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_01165 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMEC673_01170 PF08323 Starch synthase catalytic domain AMEC673_01170 PF00534 Glycosyl transferases group 1 AMEC673_01175 PF08468 Methyltransferase small domain N-terminal AMEC673_01175 PF05175 Methyltransferase small domain AMEC673_01180 PF02390 Putative methyltransferase AMEC673_01190 PF00633 Helix-hairpin-helix motif AMEC673_01190 PF10576 Iron-sulfur binding domain of endonuclease III AMEC673_01190 PF14815 NUDIX domain AMEC673_01190 PF00730 HhH-GPD superfamily base excision DNA repair protein AMEC673_01195 PF04362 Bacterial Fe(2+) trafficking AMEC673_01205 PF17200 Single Cache domain 2 AMEC673_01205 PF00672 HAMP domain AMEC673_01205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_01210 PF01051 Initiator Replication protein AMEC673_01220 PF01051 Initiator Replication protein AMEC673_01230 PF01051 Initiator Replication protein AMEC673_01235 PF00202 Aminotransferase class-III AMEC673_01240 PF00072 Response regulator receiver domain AMEC673_01245 PF01627 Hpt domain AMEC673_01245 PF02895 Signal transducing histidine kinase, homodimeric domain AMEC673_01245 PF09078 CheY binding AMEC673_01245 PF01584 CheW-like domain AMEC673_01245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_01250 PF01584 CheW-like domain AMEC673_01255 PF08447 PAS fold AMEC673_01255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_01255 PF13426 PAS domain AMEC673_01260 PF01739 CheR methyltransferase, SAM binding domain AMEC673_01260 PF03705 CheR methyltransferase, all-alpha domain AMEC673_01265 PF03975 CheD chemotactic sensory transduction AMEC673_01270 PF01339 CheB methylesterase AMEC673_01270 PF00072 Response regulator receiver domain AMEC673_01275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_01275 PF00672 HAMP domain AMEC673_01275 PF17200 Single Cache domain 2 AMEC673_01280 PF00072 Response regulator receiver domain AMEC673_01285 PF01627 Hpt domain AMEC673_01285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_01285 PF01584 CheW-like domain AMEC673_01285 PF09078 CheY binding AMEC673_01285 PF02895 Signal transducing histidine kinase, homodimeric domain AMEC673_01290 PF01584 CheW-like domain AMEC673_01295 PF13426 PAS domain AMEC673_01295 PF08447 PAS fold AMEC673_01295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_01300 PF08447 PAS fold AMEC673_01300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_01300 PF13426 PAS domain AMEC673_01305 PF03705 CheR methyltransferase, all-alpha domain AMEC673_01305 PF01739 CheR methyltransferase, SAM binding domain AMEC673_01310 PF03975 CheD chemotactic sensory transduction AMEC673_01315 PF01339 CheB methylesterase AMEC673_01315 PF00072 Response regulator receiver domain AMEC673_01325 PF13419 Haloacid dehalogenase-like hydrolase AMEC673_01335 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMEC673_01335 PF00356 Bacterial regulatory proteins, lacI family AMEC673_01345 PF01204 Trehalase AMEC673_01360 PF13419 Haloacid dehalogenase-like hydrolase AMEC673_01370 PF09308 LuxQ, periplasmic AMEC673_01370 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_01370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_01370 PF00072 Response regulator receiver domain AMEC673_01385 PF00356 Bacterial regulatory proteins, lacI family AMEC673_01390 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMEC673_01390 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMEC673_01400 PF03825 Nucleoside H+ symporter AMEC673_01410 PF05199 GMC oxidoreductase AMEC673_01410 PF00732 GMC oxidoreductase AMEC673_01425 PF00465 Iron-containing alcohol dehydrogenase AMEC673_01430 PF01063 Amino-transferase class IV AMEC673_01435 PF00300 Histidine phosphatase superfamily (branch 1) AMEC673_01445 PF00694 Aconitase C-terminal domain AMEC673_01445 PF00330 Aconitase family (aconitate hydratase) AMEC673_01455 PF00437 Type II/IV secretion system protein AMEC673_01460 PF00338 Ribosomal protein S10p/S20e AMEC673_01465 PF00297 Ribosomal protein L3 AMEC673_01470 PF00573 Ribosomal protein L4/L1 family AMEC673_01475 PF00276 Ribosomal protein L23 AMEC673_01480 PF00181 Ribosomal Proteins L2, RNA binding domain AMEC673_01480 PF03947 Ribosomal Proteins L2, C-terminal domain AMEC673_01485 PF00203 Ribosomal protein S19 AMEC673_01490 PF00237 Ribosomal protein L22p/L17e AMEC673_01495 PF00189 Ribosomal protein S3, C-terminal domain AMEC673_01495 PF07650 KH domain AMEC673_01500 PF00252 Ribosomal protein L16p/L10e AMEC673_01505 PF00831 Ribosomal L29 protein AMEC673_01510 PF00366 Ribosomal protein S17 AMEC673_01520 PF00534 Glycosyl transferases group 1 AMEC673_01520 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMEC673_01540 PF02743 Cache domain AMEC673_01540 PF00672 HAMP domain AMEC673_01540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_01545 PF01432 Peptidase family M3 AMEC673_01565 PF00551 Formyl transferase AMEC673_01565 PF01842 ACT domain AMEC673_01575 PF08482 ATP-dependent helicase C-terminal AMEC673_01575 PF00271 Helicase conserved C-terminal domain AMEC673_01575 PF04408 Helicase associated domain (HA2) AMEC673_01575 PF00270 DEAD/DEAH box helicase AMEC673_01585 PF13406 Transglycosylase SLT domain AMEC673_01590 PF00905 Penicillin binding protein transpeptidase domain AMEC673_01590 PF00912 Transglycosylase AMEC673_01590 PF14814 Bifunctional transglycosylase second domain AMEC673_01605 PF05661 Protein of unknown function (DUF808) AMEC673_01615 PF12833 Helix-turn-helix domain AMEC673_01625 PF00543 Nitrogen regulatory protein P-II AMEC673_01630 PF00909 Ammonium Transporter Family AMEC673_01640 PF04261 Dyp-type peroxidase family AMEC673_01645 PF00211 Adenylate and Guanylate cyclase catalytic domain AMEC673_01645 PF00672 HAMP domain AMEC673_01650 PF00202 Aminotransferase class-III AMEC673_01655 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMEC673_01655 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMEC673_01670 PF00873 AcrB/AcrD/AcrF family AMEC673_01680 PF00672 HAMP domain AMEC673_01680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_01680 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_01680 PF01627 Hpt domain AMEC673_01680 PF00072 Response regulator receiver domain AMEC673_01680 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMEC673_01685 PF03989 DNA gyrase C-terminal domain, beta-propeller AMEC673_01685 PF00521 DNA gyrase/topoisomerase IV, subunit A AMEC673_01695 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_01695 PF03707 Bacterial signalling protein N terminal repeat AMEC673_01695 PF13188 PAS domain AMEC673_01695 PF00563 EAL domain AMEC673_01705 PF00171 Aldehyde dehydrogenase family AMEC673_01710 PF04958 Arginine N-succinyltransferase beta subunit AMEC673_01715 PF00202 Aminotransferase class-III AMEC673_01725 PF00117 Glutamine amidotransferase class-I AMEC673_01730 PF00579 tRNA synthetases class I (W and Y) AMEC673_01735 PF00834 Ribulose-phosphate 3 epimerase family AMEC673_01755 PF02086 D12 class N6 adenine-specific DNA methyltransferase AMEC673_01765 PF01761 3-dehydroquinate synthase AMEC673_01770 PF01202 Shikimate kinase AMEC673_01775 PF03958 Bacterial type II/III secretion system short domain AMEC673_01775 PF11741 AMIN domain AMEC673_01775 PF07660 Secretin and TonB N terminus short domain AMEC673_01775 PF00263 Bacterial type II and III secretion system protein AMEC673_01800 PF00905 Penicillin binding protein transpeptidase domain AMEC673_01800 PF00912 Transglycosylase AMEC673_01800 PF17092 Penicillin-binding protein OB-like domain AMEC673_01805 PF00390 Malic enzyme, N-terminal domain AMEC673_01805 PF03949 Malic enzyme, NAD binding domain AMEC673_01815 PF02798 Glutathione S-transferase, N-terminal domain AMEC673_01825 PF00199 Catalase AMEC673_01825 PF06628 Catalase-related immune-responsive AMEC673_01850 PF00563 EAL domain AMEC673_01850 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_01850 PF03707 Bacterial signalling protein N terminal repeat AMEC673_01855 PF00696 Amino acid kinase family AMEC673_01855 PF00583 Acetyltransferase (GNAT) family AMEC673_01860 PF14698 Argininosuccinate lyase C-terminal AMEC673_01860 PF00206 Lyase AMEC673_01865 PF00764 Arginosuccinate synthase AMEC673_01880 PF00696 Amino acid kinase family AMEC673_01885 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMEC673_01885 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMEC673_01890 PF02142 MGS-like domain AMEC673_01900 PF02107 Flagellar L-ring protein AMEC673_01915 PF00072 Response regulator receiver domain AMEC673_01915 PF00486 Transcriptional regulatory protein, C terminal AMEC673_01920 PF16527 Two-component sensor protein CpxA, periplasmic domain AMEC673_01920 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_01920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_01920 PF00672 HAMP domain AMEC673_01925 PF12146 Serine aminopeptidase, S33 AMEC673_01930 PF00588 SpoU rRNA Methylase family AMEC673_01935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMEC673_01940 PF00005 ABC transporter AMEC673_01940 PF12704 MacB-like periplasmic core domain AMEC673_01940 PF02687 FtsX-like permease family AMEC673_01945 PF02321 Outer membrane efflux protein AMEC673_01955 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMEC673_01955 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMEC673_01960 PF02556 Preprotein translocase subunit SecB AMEC673_01965 PF00462 Glutaredoxin AMEC673_01970 PF00581 Rhodanese-like domain AMEC673_01975 PF01551 Peptidase family M23 AMEC673_01980 PF04748 Divergent polysaccharide deacetylase AMEC673_01990 PF03009 Glycerophosphoryl diester phosphodiesterase family AMEC673_02000 PF02666 Phosphatidylserine decarboxylase AMEC673_02005 PF03193 RsgA GTPase AMEC673_02010 PF00929 Exonuclease AMEC673_02020 PF07715 TonB-dependent Receptor Plug Domain AMEC673_02020 PF00593 TonB dependent receptor AMEC673_02035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMEC673_02035 PF00205 Thiamine pyrophosphate enzyme, central domain AMEC673_02035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMEC673_02040 PF10369 Small subunit of acetolactate synthase AMEC673_02045 PF01979 Amidohydrolase family AMEC673_02050 PF03606 C4-dicarboxylate anaerobic carrier AMEC673_02055 PF07715 TonB-dependent Receptor Plug Domain AMEC673_02055 PF00593 TonB dependent receptor AMEC673_02060 PF03575 Peptidase family S51 AMEC673_02070 PF02416 mttA/Hcf106 family AMEC673_02075 PF02416 mttA/Hcf106 family AMEC673_02080 PF00902 Sec-independent protein translocase protein (TatC) AMEC673_02090 PF01026 TatD related DNase AMEC673_02095 PF00563 EAL domain AMEC673_02095 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_02095 PF00360 Phytochrome region AMEC673_02095 PF01590 GAF domain AMEC673_02100 PF00490 Delta-aminolevulinic acid dehydratase AMEC673_02105 PF02541 Ppx/GppA phosphatase family AMEC673_02110 PF00270 DEAD/DEAH box helicase AMEC673_02110 PF00271 Helicase conserved C-terminal domain AMEC673_02115 PF00085 Thioredoxin AMEC673_02120 PF07497 Rho termination factor, RNA-binding domain AMEC673_02120 PF07498 Rho termination factor, N-terminal domain AMEC673_02120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMEC673_02130 PF00072 Response regulator receiver domain AMEC673_02130 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_02130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_02130 PF09308 LuxQ, periplasmic AMEC673_02135 PF06965 Na+/H+ antiporter 1 AMEC673_02140 PF00731 AIR carboxylase AMEC673_02145 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMEC673_02145 PF02222 ATP-grasp domain AMEC673_02155 PF00210 Ferritin-like domain AMEC673_02160 PF07995 Glucose / Sorbosone dehydrogenase AMEC673_02165 PF00326 Prolyl oligopeptidase family AMEC673_02165 PF07676 WD40-like Beta Propeller Repeat AMEC673_02175 PF00085 Thioredoxin AMEC673_02190 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AMEC673_02195 PF00709 Adenylosuccinate synthetase AMEC673_02200 PF00171 Aldehyde dehydrogenase family AMEC673_02225 PF03553 Na+/H+ antiporter family AMEC673_02230 PF00933 Glycosyl hydrolase family 3 N terminal domain AMEC673_02240 PF07075 Protein of unknown function (DUF1343) AMEC673_02245 PF01380 SIS domain AMEC673_02250 PF00842 Alanine racemase, C-terminal domain AMEC673_02250 PF01168 Alanine racemase, N-terminal domain AMEC673_02265 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMEC673_02300 PF00464 Serine hydroxymethyltransferase AMEC673_02305 PF03466 LysR substrate binding domain AMEC673_02305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_02310 PF03831 PhnA domain AMEC673_02310 PF08274 PhnA Zinc-Ribbon AMEC673_02315 PF00583 Acetyltransferase (GNAT) family AMEC673_02325 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AMEC673_02390 PF00108 Thiolase, N-terminal domain AMEC673_02390 PF02803 Thiolase, C-terminal domain AMEC673_02395 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMEC673_02395 PF00378 Enoyl-CoA hydratase/isomerase AMEC673_02395 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMEC673_02400 PF10145 Phage-related minor tail protein AMEC673_02400 PF01464 Transglycosylase SLT domain AMEC673_02400 PF01551 Peptidase family M23 AMEC673_02405 PF00557 Metallopeptidase family M24 AMEC673_02415 PF00348 Polyprenyl synthetase AMEC673_02420 PF00829 Ribosomal prokaryotic L21 protein AMEC673_02425 PF01016 Ribosomal L27 protein AMEC673_02430 PF01018 GTP1/OBG AMEC673_02430 PF01926 50S ribosome-binding GTPase AMEC673_02525 PF00873 AcrB/AcrD/AcrF family AMEC673_02575 PF09055 Nickel-containing superoxide dismutase AMEC673_02590 PF00186 Dihydrofolate reductase AMEC673_02595 PF04539 Sigma-70 region 3 AMEC673_02595 PF04545 Sigma-70, region 4 AMEC673_02595 PF04542 Sigma-70 region 2 AMEC673_02595 PF00140 Sigma-70 factor, region 1.2 AMEC673_02600 PF01551 Peptidase family M23 AMEC673_02600 PF01476 LysM domain AMEC673_02605 PF09335 SNARE associated Golgi protein AMEC673_02615 PF01142 tRNA pseudouridine synthase D (TruD) AMEC673_02620 PF02542 YgbB family AMEC673_02625 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMEC673_02630 PF04977 Septum formation initiator AMEC673_02640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_02640 PF17200 Single Cache domain 2 AMEC673_02640 PF00672 HAMP domain AMEC673_02650 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMEC673_02650 PF00171 Aldehyde dehydrogenase family AMEC673_02650 PF01619 Proline dehydrogenase AMEC673_02650 PF14850 DNA-binding domain of Proline dehydrogenase AMEC673_02655 PF02321 Outer membrane efflux protein AMEC673_02665 PF00873 AcrB/AcrD/AcrF family AMEC673_02670 PF00486 Transcriptional regulatory protein, C terminal AMEC673_02670 PF00072 Response regulator receiver domain AMEC673_02675 PF18719 ArlS sensor domain AMEC673_02675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_02675 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_02695 PF02976 DNA mismatch repair enzyme MutH AMEC673_02700 PF00293 NUDIX domain AMEC673_02705 PF02896 PEP-utilising enzyme, TIM barrel domain AMEC673_02705 PF01590 GAF domain AMEC673_02705 PF05524 PEP-utilising enzyme, N-terminal AMEC673_02705 PF00391 PEP-utilising enzyme, mobile domain AMEC673_02710 PF01925 Sulfite exporter TauE/SafE AMEC673_02715 PF01790 Prolipoprotein diacylglyceryl transferase AMEC673_02720 PF00303 Thymidylate synthase AMEC673_02725 PF00072 Response regulator receiver domain AMEC673_02730 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_02730 PF05230 MASE2 domain AMEC673_02735 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMEC673_02735 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_02735 PF00072 Response regulator receiver domain AMEC673_02735 PF01627 Hpt domain AMEC673_02735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_02735 PF00672 HAMP domain AMEC673_02740 PF07690 Major Facilitator Superfamily AMEC673_02755 PF00849 RNA pseudouridylate synthase AMEC673_02760 PF18339 RapA N-terminal Tudor like domain 1 AMEC673_02760 PF18337 RapA N-terminal Tudor like domain AMEC673_02760 PF00271 Helicase conserved C-terminal domain AMEC673_02760 PF12137 RNA polymerase recycling family C-terminal AMEC673_02760 PF00176 SNF2 family N-terminal domain AMEC673_02775 PF13638 PIN domain AMEC673_02775 PF02562 PhoH-like protein AMEC673_02780 PF00392 Bacterial regulatory proteins, gntR family AMEC673_02780 PF00155 Aminotransferase class I and II AMEC673_02785 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMEC673_02785 PF13746 4Fe-4S dicluster domain AMEC673_02785 PF12801 4Fe-4S binding domain AMEC673_02800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMEC673_02800 PF10414 Sirohaem synthase dimerisation region AMEC673_02805 PF03880 DbpA RNA binding domain AMEC673_02805 PF00270 DEAD/DEAH box helicase AMEC673_02805 PF00271 Helicase conserved C-terminal domain AMEC673_02825 PF02321 Outer membrane efflux protein AMEC673_02830 PF00293 NUDIX domain AMEC673_02840 PF00149 Calcineurin-like phosphoesterase AMEC673_02845 PF05728 Uncharacterised protein family (UPF0227) AMEC673_02850 PF00986 DNA gyrase B subunit, carboxyl terminus AMEC673_02850 PF00204 DNA gyrase B AMEC673_02850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_02850 PF01751 Toprim domain AMEC673_02895 PF13419 Haloacid dehalogenase-like hydrolase AMEC673_02915 PF04055 Radical SAM superfamily AMEC673_02925 PF00152 tRNA synthetases class II (D, K and N) AMEC673_02930 PF00593 TonB dependent receptor AMEC673_02930 PF07715 TonB-dependent Receptor Plug Domain AMEC673_02945 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMEC673_02950 PF05175 Methyltransferase small domain AMEC673_02965 PF01722 BolA-like protein AMEC673_02970 PF01569 PAP2 superfamily AMEC673_02980 PF08376 Nitrate and nitrite sensing AMEC673_02980 PF03861 ANTAR domain AMEC673_02990 PF00916 Sulfate permease family AMEC673_02990 PF01740 STAS domain AMEC673_03000 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMEC673_03000 PF04324 BFD-like [2Fe-2S] binding domain AMEC673_03000 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMEC673_03000 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMEC673_03000 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMEC673_03005 PF13806 Rieske-like [2Fe-2S] domain AMEC673_03010 PF00384 Molybdopterin oxidoreductase AMEC673_03010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMEC673_03010 PF04324 BFD-like [2Fe-2S] binding domain AMEC673_03010 PF01568 Molydopterin dinucleotide binding domain AMEC673_03015 PF10414 Sirohaem synthase dimerisation region AMEC673_03015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMEC673_03015 PF14824 Sirohaem biosynthesis protein central AMEC673_03020 PF00591 Glycosyl transferase family, a/b domain AMEC673_03020 PF02885 Glycosyl transferase family, helical bundle domain AMEC673_03025 PF02872 5'-nucleotidase, C-terminal domain AMEC673_03025 PF00149 Calcineurin-like phosphoesterase AMEC673_03030 PF00360 Phytochrome region AMEC673_03030 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_03030 PF01590 GAF domain AMEC673_03030 PF00563 EAL domain AMEC673_03035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_03035 PF08447 PAS fold AMEC673_03035 PF13426 PAS domain AMEC673_03040 PF00005 ABC transporter AMEC673_03045 PF00528 Binding-protein-dependent transport system inner membrane component AMEC673_03050 PF00005 ABC transporter AMEC673_03065 PF01323 DSBA-like thioredoxin domain AMEC673_03070 PF07715 TonB-dependent Receptor Plug Domain AMEC673_03070 PF00593 TonB dependent receptor AMEC673_03075 PF01636 Phosphotransferase enzyme family AMEC673_03080 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMEC673_03080 PF12801 4Fe-4S binding domain AMEC673_03080 PF13746 4Fe-4S dicluster domain AMEC673_03095 PF02770 Acyl-CoA dehydrogenase, middle domain AMEC673_03095 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMEC673_03095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMEC673_03095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMEC673_03110 PF13378 Enolase C-terminal domain-like AMEC673_03110 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMEC673_03115 PF00596 Class II Aldolase and Adducin N-terminal domain AMEC673_03125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMEC673_03130 PF00873 AcrB/AcrD/AcrF family AMEC673_03145 PF02743 Cache domain AMEC673_03145 PF00672 HAMP domain AMEC673_03145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_03160 PF08275 DNA primase catalytic core, N-terminal domain AMEC673_03160 PF08278 DNA primase DnaG DnaB-binding AMEC673_03160 PF10410 DnaB-helicase binding domain of primase AMEC673_03160 PF01807 CHC2 zinc finger AMEC673_03170 PF01165 Ribosomal protein S21 AMEC673_03175 PF00814 Glycoprotease family AMEC673_03185 PF02660 Glycerol-3-phosphate acyltransferase AMEC673_03190 PF02152 Dihydroneopterin aldolase AMEC673_03200 PF02673 Bacitracin resistance protein BacA AMEC673_03205 PF01230 HIT domain AMEC673_03220 PF03594 Benzoate membrane transport protein AMEC673_03225 PF07883 Cupin domain AMEC673_03225 PF01381 Helix-turn-helix AMEC673_03230 PF04381 Putative exonuclease, RdgC AMEC673_03235 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMEC673_03235 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_03235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_03240 PF00486 Transcriptional regulatory protein, C terminal AMEC673_03240 PF00072 Response regulator receiver domain AMEC673_03245 PF11808 Phosphate regulon sensor protein PhoR AMEC673_03245 PF00989 PAS fold AMEC673_03245 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_03245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_03250 PF12849 PBP superfamily domain AMEC673_03275 PF01618 MotA/TolQ/ExbB proton channel family AMEC673_03280 PF01618 MotA/TolQ/ExbB proton channel family AMEC673_03285 PF02472 Biopolymer transport protein ExbD/TolR AMEC673_03290 PF03544 Gram-negative bacterial TonB protein C-terminal AMEC673_03300 PF00072 Response regulator receiver domain AMEC673_03305 PF01627 Hpt domain AMEC673_03305 PF00672 HAMP domain AMEC673_03305 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_03305 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMEC673_03305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_03305 PF00072 Response regulator receiver domain AMEC673_03310 PF00501 AMP-binding enzyme AMEC673_03310 PF13193 AMP-binding enzyme C-terminal domain AMEC673_03320 PF07995 Glucose / Sorbosone dehydrogenase AMEC673_03325 PF11791 Aconitate B N-terminal domain AMEC673_03325 PF06434 Aconitate hydratase 2 N-terminus AMEC673_03325 PF00330 Aconitase family (aconitate hydratase) AMEC673_03330 PF00672 HAMP domain AMEC673_03330 PF00072 Response regulator receiver domain AMEC673_03330 PF01627 Hpt domain AMEC673_03330 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_03330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_03330 PF17149 Periplasmic sensor domain found in signal transduction proteins AMEC673_03350 PF11791 Aconitate B N-terminal domain AMEC673_03350 PF06434 Aconitate hydratase 2 N-terminus AMEC673_03350 PF00330 Aconitase family (aconitate hydratase) AMEC673_03360 PF00696 Amino acid kinase family AMEC673_03360 PF01842 ACT domain AMEC673_03370 PF00672 HAMP domain AMEC673_03370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_03385 PF04379 ApaG domain AMEC673_03390 PF00398 Ribosomal RNA adenine dimethylase AMEC673_03395 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMEC673_03400 PF00639 PPIC-type PPIASE domain AMEC673_03400 PF09312 SurA N-terminal domain AMEC673_03405 PF04453 LPS transport system D AMEC673_03405 PF03968 OstA-like protein AMEC673_03410 PF05099 Tellurite resistance protein TerB AMEC673_03410 PF00226 DnaJ domain AMEC673_03415 PF02899 Phage integrase, N-terminal SAM-like domain AMEC673_03415 PF00589 Phage integrase family AMEC673_03420 PF13098 Thioredoxin-like domain AMEC673_03420 PF10411 Disulfide bond isomerase protein N-terminus AMEC673_03425 PF01368 DHH family AMEC673_03425 PF17768 RecJ OB domain AMEC673_03425 PF02272 DHHA1 domain AMEC673_03435 PF02565 Recombination protein O C terminal AMEC673_03435 PF11967 Recombination protein O N terminal AMEC673_03440 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMEC673_03445 PF01648 4'-phosphopantetheinyl transferase superfamily AMEC673_03450 PF05958 tRNA (Uracil-5-)-methyltransferase AMEC673_03455 PF13291 ACT domain AMEC673_03455 PF02824 TGS domain AMEC673_03455 PF04607 Region found in RelA / SpoT proteins AMEC673_03460 PF03819 MazG nucleotide pyrophosphohydrolase domain AMEC673_03495 PF00501 AMP-binding enzyme AMEC673_03495 PF13193 AMP-binding enzyme C-terminal domain AMEC673_03505 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AMEC673_03515 PF00535 Glycosyl transferase family 2 AMEC673_03535 PF08521 Two-component sensor kinase N-terminal AMEC673_03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_03535 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_03540 PF00072 Response regulator receiver domain AMEC673_03540 PF00486 Transcriptional regulatory protein, C terminal AMEC673_03550 PF00572 Ribosomal protein L13 AMEC673_03555 PF00380 Ribosomal protein S9/S16 AMEC673_03560 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMEC673_03560 PF00355 Rieske [2Fe-2S] domain AMEC673_03565 PF00032 Cytochrome b(C-terminal)/b6/petD AMEC673_03565 PF00033 Cytochrome b/b6/petB AMEC673_03570 PF02167 Cytochrome C1 family AMEC673_03575 PF00043 Glutathione S-transferase, C-terminal domain AMEC673_03575 PF02798 Glutathione S-transferase, N-terminal domain AMEC673_03580 PF04386 Stringent starvation protein B AMEC673_03595 PF00486 Transcriptional regulatory protein, C terminal AMEC673_03595 PF00072 Response regulator receiver domain AMEC673_03600 PF03448 MgtE intracellular N domain AMEC673_03600 PF01769 Divalent cation transporter AMEC673_03600 PF00571 CBS domain AMEC673_03605 PF00381 PTS HPr component phosphorylation site AMEC673_03610 PF03668 P-loop ATPase protein family AMEC673_03615 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMEC673_03620 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMEC673_03625 PF04552 Sigma-54, DNA binding domain AMEC673_03625 PF04963 Sigma-54 factor, core binding domain AMEC673_03625 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMEC673_03630 PF00005 ABC transporter AMEC673_03630 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMEC673_03635 PF03968 OstA-like protein AMEC673_03650 PF00571 CBS domain AMEC673_03650 PF01380 SIS domain AMEC673_03655 PF01699 Sodium/calcium exchanger protein AMEC673_03660 PF00005 ABC transporter AMEC673_03665 PF02405 Permease MlaE AMEC673_03670 PF02470 MlaD protein AMEC673_03675 PF05494 MlaC protein AMEC673_03685 PF01722 BolA-like protein AMEC673_03690 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMEC673_03695 PF13180 PDZ domain AMEC673_03700 PF00595 PDZ domain AMEC673_03700 PF13180 PDZ domain AMEC673_03710 PF03969 AFG1-like ATPase AMEC673_03715 PF01709 Transcriptional regulator AMEC673_03730 PF00881 Nitroreductase family AMEC673_03740 PF14403 Circularly permuted ATP-grasp type 2 AMEC673_03745 PF01841 Transglutaminase-like superfamily AMEC673_03745 PF08379 Bacterial transglutaminase-like N-terminal region AMEC673_03750 PF04168 A predicted alpha-helical domain with a conserved ER motif. AMEC673_03750 PF14403 Circularly permuted ATP-grasp type 2 AMEC673_03765 PF07549 SecD/SecF GG Motif AMEC673_03765 PF02355 Protein export membrane protein AMEC673_03770 PF02080 TrkA-C domain AMEC673_03770 PF00999 Sodium/hydrogen exchanger family AMEC673_03770 PF03471 Transporter associated domain AMEC673_03775 PF07715 TonB-dependent Receptor Plug Domain AMEC673_03775 PF00593 TonB dependent receptor AMEC673_03780 PF00892 EamA-like transporter family AMEC673_03790 PF00072 Response regulator receiver domain AMEC673_03790 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_03790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_03790 PF09308 LuxQ, periplasmic AMEC673_03795 PF13458 Periplasmic binding protein AMEC673_03810 PF02772 S-adenosylmethionine synthetase, central domain AMEC673_03810 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMEC673_03810 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMEC673_03815 PF02780 Transketolase, C-terminal domain AMEC673_03815 PF00456 Transketolase, thiamine diphosphate binding domain AMEC673_03815 PF02779 Transketolase, pyrimidine binding domain AMEC673_03820 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMEC673_03820 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMEC673_03825 PF00162 Phosphoglycerate kinase AMEC673_03830 PF00274 Fructose-bisphosphate aldolase class-I AMEC673_03835 PF01219 Prokaryotic diacylglycerol kinase AMEC673_03840 PF00884 Sulfatase AMEC673_03840 PF08019 Phosphoethanolamine transferase EptA/EptB AMEC673_03845 PF00072 Response regulator receiver domain AMEC673_03845 PF00486 Transcriptional regulatory protein, C terminal AMEC673_03850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_03850 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_03850 PF00672 HAMP domain AMEC673_03860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMEC673_03860 PF00529 HlyD membrane-fusion protein of T1SS AMEC673_03865 PF00873 AcrB/AcrD/AcrF family AMEC673_03870 PF02321 Outer membrane efflux protein AMEC673_03880 PF07676 WD40-like Beta Propeller Repeat AMEC673_03880 PF00326 Prolyl oligopeptidase family AMEC673_03885 PF02541 Ppx/GppA phosphatase family AMEC673_03890 PF02503 Polyphosphate kinase middle domain AMEC673_03890 PF13090 Polyphosphate kinase C-terminal domain 2 AMEC673_03890 PF13089 Polyphosphate kinase N-terminal domain AMEC673_03890 PF17941 Polyphosphate kinase C-terminal domain 1 AMEC673_03900 PF00528 Binding-protein-dependent transport system inner membrane component AMEC673_03905 PF00528 Binding-protein-dependent transport system inner membrane component AMEC673_03910 PF00005 ABC transporter AMEC673_03915 PF01895 PhoU domain AMEC673_03920 PF01384 Phosphate transporter family AMEC673_03930 PF03466 LysR substrate binding domain AMEC673_03930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_03955 PF03006 Haemolysin-III related AMEC673_03965 PF01047 MarR family AMEC673_03970 PF02566 OsmC-like protein AMEC673_03975 PF01433 Peptidase family M1 domain AMEC673_03985 PF09186 Domain of unknown function (DUF1949) AMEC673_03985 PF01205 Uncharacterized protein family UPF0029 AMEC673_03995 PF13426 PAS domain AMEC673_03995 PF08447 PAS fold AMEC673_03995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_04005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_04005 PF03466 LysR substrate binding domain AMEC673_04010 PF00248 Aldo/keto reductase family AMEC673_04020 PF00128 Alpha amylase, catalytic domain AMEC673_04020 PF02806 Alpha amylase, C-terminal all-beta domain AMEC673_04020 PF03714 Bacterial pullanase-associated domain AMEC673_04025 PF00149 Calcineurin-like phosphoesterase AMEC673_04025 PF12320 Type 5 capsule protein repressor C-terminal domain AMEC673_04030 PF13476 AAA domain AMEC673_04050 PF00535 Glycosyl transferase family 2 AMEC673_04055 PF00486 Transcriptional regulatory protein, C terminal AMEC673_04055 PF00072 Response regulator receiver domain AMEC673_04060 PF00672 HAMP domain AMEC673_04060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_04060 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_04065 PF00375 Sodium:dicarboxylate symporter family AMEC673_04070 PF00491 Arginase family AMEC673_04075 PF01979 Amidohydrolase family AMEC673_04080 PF07702 UTRA domain AMEC673_04080 PF00392 Bacterial regulatory proteins, gntR family AMEC673_04090 PF00221 Aromatic amino acid lyase AMEC673_04105 PF01869 BadF/BadG/BcrA/BcrD ATPase family AMEC673_04110 PF01979 Amidohydrolase family AMEC673_04120 PF12848 ABC transporter AMEC673_04120 PF00005 ABC transporter AMEC673_04150 PF00924 Mechanosensitive ion channel AMEC673_04155 PF00544 Pectate lyase AMEC673_04180 PF03150 Di-haem cytochrome c peroxidase AMEC673_04210 PF04172 LrgB-like family AMEC673_04215 PF00072 Response regulator receiver domain AMEC673_04240 PF04055 Radical SAM superfamily AMEC673_04240 PF06969 HemN C-terminal domain AMEC673_04245 PF01725 Ham1 family AMEC673_04250 PF00271 Helicase conserved C-terminal domain AMEC673_04250 PF00270 DEAD/DEAH box helicase AMEC673_04265 PF01743 Poly A polymerase head domain AMEC673_04265 PF12627 Probable RNA and SrmB- binding site of polymerase A AMEC673_04270 PF01471 Putative peptidoglycan binding domain AMEC673_04270 PF13401 AAA domain AMEC673_04280 PF01966 HD domain AMEC673_04280 PF11871 Domain of unknown function (DUF3391) AMEC673_04285 PF00694 Aconitase C-terminal domain AMEC673_04290 PF00330 Aconitase family (aconitate hydratase) AMEC673_04295 PF00180 Isocitrate/isopropylmalate dehydrogenase AMEC673_04300 PF08502 LeuA allosteric (dimerisation) domain AMEC673_04300 PF00682 HMGL-like AMEC673_04310 PF03952 Enolase, N-terminal domain AMEC673_04310 PF00113 Enolase, C-terminal TIM barrel domain AMEC673_04315 PF06418 CTP synthase N-terminus AMEC673_04315 PF00117 Glutamine amidotransferase class-I AMEC673_04320 PF01624 MutS domain I AMEC673_04320 PF05188 MutS domain II AMEC673_04320 PF05192 MutS domain III AMEC673_04320 PF05190 MutS family domain IV AMEC673_04320 PF00488 MutS domain V AMEC673_04325 PF02464 Competence-damaged protein AMEC673_04330 PF00154 recA bacterial DNA recombination protein AMEC673_04335 PF00005 ABC transporter AMEC673_04340 PF12679 ABC-2 family transporter protein AMEC673_04355 PF00005 ABC transporter AMEC673_04360 PF03379 CcmB protein AMEC673_04365 PF01578 Cytochrome C assembly protein AMEC673_04370 PF04995 Heme exporter protein D (CcmD) AMEC673_04375 PF03100 CcmE AMEC673_04380 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMEC673_04380 PF01578 Cytochrome C assembly protein AMEC673_04385 PF08534 Redoxin AMEC673_04390 PF03918 Cytochrome C biogenesis protein AMEC673_04400 PF04333 MlaA lipoprotein AMEC673_04405 PF16363 GDP-mannose 4,6 dehydratase AMEC673_04415 PF00854 POT family AMEC673_04425 PF00005 ABC transporter AMEC673_04435 PF10531 SLBB domain AMEC673_04435 PF02563 Polysaccharide biosynthesis/export protein AMEC673_04445 PF00953 Glycosyl transferase family 4 AMEC673_04450 PF00535 Glycosyl transferase family 2 AMEC673_04460 PF00483 Nucleotidyl transferase AMEC673_04465 PF10531 SLBB domain AMEC673_04470 PF00180 Isocitrate/isopropylmalate dehydrogenase AMEC673_04470 PF18324 Hypothetical protein TT1725 AMEC673_04485 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AMEC673_04485 PF03641 Possible lysine decarboxylase AMEC673_04485 PF11892 Domain of unknown function (DUF3412) AMEC673_04490 PF00072 Response regulator receiver domain AMEC673_04490 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_04495 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMEC673_04495 PF14489 QueF-like protein AMEC673_04500 PF07348 Syd protein (SUKH-2) AMEC673_04535 PF00849 RNA pseudouridylate synthase AMEC673_04540 PF00258 Flavodoxin AMEC673_04545 PF14602 Hexapeptide repeat of succinyl-transferase AMEC673_04545 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMEC673_04545 PF00132 Bacterial transferase hexapeptide (six repeats) AMEC673_04550 PF01966 HD domain AMEC673_04550 PF08335 GlnD PII-uridylyltransferase AMEC673_04550 PF01909 Nucleotidyltransferase domain AMEC673_04555 PF00557 Metallopeptidase family M24 AMEC673_04560 PF00318 Ribosomal protein S2 AMEC673_04565 PF00889 Elongation factor TS AMEC673_04570 PF00696 Amino acid kinase family AMEC673_04575 PF01765 Ribosome recycling factor AMEC673_04580 PF01255 Putative undecaprenyl diphosphate synthase AMEC673_04590 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMEC673_04590 PF13288 DXP reductoisomerase C-terminal domain AMEC673_04590 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMEC673_04595 PF02163 Peptidase family M50 AMEC673_04595 PF17820 PDZ domain AMEC673_04600 PF07244 Surface antigen variable number repeat AMEC673_04600 PF01103 Surface antigen AMEC673_04605 PF03938 Outer membrane protein (OmpH-like) AMEC673_04610 PF07977 FabA-like domain AMEC673_04615 PF00132 Bacterial transferase hexapeptide (six repeats) AMEC673_04615 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMEC673_04620 PF02684 Lipid-A-disaccharide synthetase AMEC673_04625 PF01351 Ribonuclease HII AMEC673_04630 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMEC673_04630 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMEC673_04630 PF14579 Helix-hairpin-helix motif AMEC673_04630 PF02811 PHP domain AMEC673_04630 PF01336 OB-fold nucleic acid binding domain AMEC673_04635 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMEC673_04640 PF01171 PP-loop family AMEC673_04640 PF09179 TilS substrate binding domain AMEC673_04640 PF11734 TilS substrate C-terminal domain AMEC673_04645 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_04645 PF00563 EAL domain AMEC673_04645 PF03707 Bacterial signalling protein N terminal repeat AMEC673_04650 PF02254 TrkA-N domain AMEC673_04650 PF02080 TrkA-C domain AMEC673_04650 PF00999 Sodium/hydrogen exchanger family AMEC673_04660 PF14437 MafB19-like deaminase AMEC673_04670 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMEC673_04670 PF01464 Transglycosylase SLT domain AMEC673_04675 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AMEC673_04675 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMEC673_04675 PF02769 AIR synthase related protein, C-terminal domain AMEC673_04680 PF01713 Smr domain AMEC673_04695 PF05736 OprF membrane domain AMEC673_04695 PF00691 OmpA family AMEC673_04700 PF03412 Peptidase C39 family AMEC673_04700 PF00005 ABC transporter AMEC673_04700 PF00664 ABC transporter transmembrane region AMEC673_04705 PF00529 HlyD membrane-fusion protein of T1SS AMEC673_04705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMEC673_04710 PF00072 Response regulator receiver domain AMEC673_04710 PF00196 Bacterial regulatory proteins, luxR family AMEC673_04750 PF00072 Response regulator receiver domain AMEC673_04750 PF01584 CheW-like domain AMEC673_04755 PF01739 CheR methyltransferase, SAM binding domain AMEC673_04755 PF03705 CheR methyltransferase, all-alpha domain AMEC673_04760 PF00460 Flagella basal body rod protein AMEC673_04765 PF00460 Flagella basal body rod protein AMEC673_04765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMEC673_04770 PF03963 Flagellar hook capping protein - N-terminal region AMEC673_04770 PF13860 FlgD Ig-like domain AMEC673_04770 PF13861 FlgD Tudor-like domain AMEC673_04775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMEC673_04775 PF07559 Flagellar basal body protein FlaE AMEC673_04775 PF00460 Flagella basal body rod protein AMEC673_04780 PF00460 Flagella basal body rod protein AMEC673_04780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMEC673_04785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMEC673_04785 PF00460 Flagella basal body rod protein AMEC673_04790 PF02107 Flagellar L-ring protein AMEC673_04795 PF02119 Flagellar P-ring protein AMEC673_04800 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMEC673_04800 PF10135 Rod binding protein AMEC673_04820 PF00669 Bacterial flagellin N-terminal helical region AMEC673_04820 PF00700 Bacterial flagellin C-terminal helical region AMEC673_04820 PF07196 Flagellin hook IN motif AMEC673_04825 PF00669 Bacterial flagellin N-terminal helical region AMEC673_04825 PF07196 Flagellin hook IN motif AMEC673_04825 PF00700 Bacterial flagellin C-terminal helical region AMEC673_04830 PF00700 Bacterial flagellin C-terminal helical region AMEC673_04830 PF07196 Flagellin hook IN motif AMEC673_04830 PF00669 Bacterial flagellin N-terminal helical region AMEC673_04835 PF03646 FlaG protein AMEC673_04840 PF07195 Flagellar hook-associated protein 2 C-terminus AMEC673_04840 PF02465 Flagellar hook-associated protein 2 N-terminus AMEC673_04840 PF07196 Flagellin hook IN motif AMEC673_04845 PF02561 Flagellar protein FliS AMEC673_04860 PF02348 Cytidylyltransferase AMEC673_04880 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMEC673_04880 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMEC673_04885 PF00550 Phosphopantetheine attachment site AMEC673_04890 PF08666 SAF domain AMEC673_04890 PF03102 NeuB family AMEC673_04895 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMEC673_04900 PF02719 Polysaccharide biosynthesis protein AMEC673_04905 PF00700 Bacterial flagellin C-terminal helical region AMEC673_04905 PF00669 Bacterial flagellin N-terminal helical region AMEC673_04910 PF00072 Response regulator receiver domain AMEC673_04910 PF00158 Sigma-54 interaction domain AMEC673_04910 PF02954 Bacterial regulatory protein, Fis family AMEC673_04915 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_04915 PF00989 PAS fold AMEC673_04915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_04920 PF00158 Sigma-54 interaction domain AMEC673_04920 PF00072 Response regulator receiver domain AMEC673_04920 PF02954 Bacterial regulatory protein, Fis family AMEC673_04925 PF02049 Flagellar hook-basal body complex protein FliE AMEC673_04930 PF08345 Flagellar M-ring protein C-terminal AMEC673_04930 PF01514 Secretory protein of YscJ/FliF family AMEC673_04935 PF14841 FliG middle domain AMEC673_04935 PF01706 FliG C-terminal domain AMEC673_04935 PF14842 FliG N-terminal domain AMEC673_04945 PF18269 T3SS EscN ATPase C-terminal domain AMEC673_04945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMEC673_04965 PF02154 Flagellar motor switch protein FliM AMEC673_04965 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMEC673_04970 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMEC673_04975 PF04347 Flagellar biosynthesis protein, FliO AMEC673_04980 PF00813 FliP family AMEC673_04985 PF01313 Bacterial export proteins, family 3 AMEC673_04990 PF01311 Bacterial export proteins, family 1 AMEC673_04995 PF01312 FlhB HrpN YscU SpaS Family AMEC673_05005 PF03734 L,D-transpeptidase catalytic domain AMEC673_05010 PF00771 FHIPEP family AMEC673_05015 PF00448 SRP54-type protein, GTPase domain AMEC673_05020 PF10609 NUBPL iron-transfer P-loop NTPase AMEC673_05025 PF04542 Sigma-70 region 2 AMEC673_05025 PF04539 Sigma-70 region 3 AMEC673_05025 PF04545 Sigma-70, region 4 AMEC673_05030 PF00072 Response regulator receiver domain AMEC673_05035 PF04344 Chemotaxis phosphatase, CheZ AMEC673_05040 PF01584 CheW-like domain AMEC673_05040 PF02895 Signal transducing histidine kinase, homodimeric domain AMEC673_05040 PF01627 Hpt domain AMEC673_05040 PF07194 P2 response regulator binding domain AMEC673_05040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_05050 PF13614 AAA domain AMEC673_05060 PF01584 CheW-like domain AMEC673_05070 PF04204 Homoserine O-succinyltransferase AMEC673_05075 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMEC673_05075 PF02310 B12 binding domain AMEC673_05075 PF02574 Homocysteine S-methyltransferase AMEC673_05075 PF02607 B12 binding domain AMEC673_05075 PF00809 Pterin binding enzyme AMEC673_05080 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMEC673_05080 PF02574 Homocysteine S-methyltransferase AMEC673_05080 PF02310 B12 binding domain AMEC673_05080 PF02607 B12 binding domain AMEC673_05080 PF00809 Pterin binding enzyme AMEC673_05090 PF06865 Pyrimidine/purine nucleoside phosphorylase AMEC673_05095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_05095 PF00672 HAMP domain AMEC673_05095 PF02743 Cache domain AMEC673_05100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_05100 PF03466 LysR substrate binding domain AMEC673_05105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_05105 PF03466 LysR substrate binding domain AMEC673_05110 PF00484 Carbonic anhydrase AMEC673_05115 PF01740 STAS domain AMEC673_05115 PF00916 Sulfate permease family AMEC673_05125 PF13977 BetI-type transcriptional repressor, C-terminal AMEC673_05125 PF00440 Bacterial regulatory proteins, tetR family AMEC673_05130 PF05649 Peptidase family M13 AMEC673_05130 PF01431 Peptidase family M13 AMEC673_05140 PF02631 RecX family AMEC673_05145 PF02272 DHHA1 domain AMEC673_05145 PF01411 tRNA synthetases class II (A) AMEC673_05145 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMEC673_05150 PF02599 Global regulator protein family AMEC673_05155 PF03061 Thioesterase superfamily AMEC673_05165 PF00364 Biotin-requiring enzyme AMEC673_05165 PF02436 Conserved carboxylase domain AMEC673_05165 PF00682 HMGL-like AMEC673_05170 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AMEC673_05175 PF00005 ABC transporter AMEC673_05180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMEC673_05180 PF00005 ABC transporter AMEC673_05185 PF12911 N-terminal TM domain of oligopeptide transport permease C AMEC673_05185 PF00528 Binding-protein-dependent transport system inner membrane component AMEC673_05190 PF00528 Binding-protein-dependent transport system inner membrane component AMEC673_05195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMEC673_05200 PF02954 Bacterial regulatory protein, Fis family AMEC673_05200 PF00158 Sigma-54 interaction domain AMEC673_05205 PF04012 PspA/IM30 family AMEC673_05220 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AMEC673_05225 PF18024 Helix-turn-helix domain AMEC673_05225 PF00158 Sigma-54 interaction domain AMEC673_05235 PF02798 Glutathione S-transferase, N-terminal domain AMEC673_05235 PF14497 Glutathione S-transferase, C-terminal domain AMEC673_05240 PF01037 Lrp/AsnC ligand binding domain AMEC673_05245 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMEC673_05245 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMEC673_05255 PF03301 Tryptophan 2,3-dioxygenase AMEC673_05260 PF00593 TonB dependent receptor AMEC673_05265 PF00593 TonB dependent receptor AMEC673_05265 PF07715 TonB-dependent Receptor Plug Domain AMEC673_05300 PF01618 MotA/TolQ/ExbB proton channel family AMEC673_05305 PF01618 MotA/TolQ/ExbB proton channel family AMEC673_05310 PF02472 Biopolymer transport protein ExbD/TolR AMEC673_05315 PF03544 Gram-negative bacterial TonB protein C-terminal AMEC673_05325 PF13718 GNAT acetyltransferase 2 AMEC673_05325 PF05127 Helicase AMEC673_05325 PF17176 tRNA-binding domain AMEC673_05325 PF08351 Domain of unknown function (DUF1726) AMEC673_05350 PF01636 Phosphotransferase enzyme family AMEC673_05360 PF00583 Acetyltransferase (GNAT) family AMEC673_05375 PF03466 LysR substrate binding domain AMEC673_05375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_05380 PF07690 Major Facilitator Superfamily AMEC673_05385 PF00296 Luciferase-like monooxygenase AMEC673_05390 PF00248 Aldo/keto reductase family AMEC673_05405 PF13533 Biotin-lipoyl like AMEC673_05410 PF01047 MarR family AMEC673_05415 PF00072 Response regulator receiver domain AMEC673_05415 PF04397 LytTr DNA-binding domain AMEC673_05420 PF07694 5TMR of 5TMR-LYT AMEC673_05420 PF06580 Histidine kinase AMEC673_05425 PF02554 Carbon starvation protein CstA AMEC673_05430 PF16658 Class II release factor RF3, C-terminal domain AMEC673_05430 PF00009 Elongation factor Tu GTP binding domain AMEC673_05430 PF03144 Elongation factor Tu domain 2 AMEC673_05435 PF03485 Arginyl tRNA synthetase N terminal domain AMEC673_05435 PF05746 DALR anticodon binding domain AMEC673_05435 PF00750 tRNA synthetases class I (R) AMEC673_05445 PF13181 Tetratricopeptide repeat AMEC673_05460 PF00072 Response regulator receiver domain AMEC673_05460 PF00196 Bacterial regulatory proteins, luxR family AMEC673_05470 PF00291 Pyridoxal-phosphate dependent enzyme AMEC673_05480 PF17158 Membrane-associated sensor, integral membrane domain AMEC673_05480 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_05485 PF04224 Protein of unknown function, DUF417 AMEC673_05500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_05500 PF03466 LysR substrate binding domain AMEC673_05505 PF05368 NmrA-like family AMEC673_05515 PF00487 Fatty acid desaturase AMEC673_05520 PF00175 Oxidoreductase NAD-binding domain AMEC673_05520 PF00970 Oxidoreductase FAD-binding domain AMEC673_05520 PF00042 Globin AMEC673_05525 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMEC673_05535 PF03462 PCRF domain AMEC673_05535 PF00472 RF-1 domain AMEC673_05540 PF00152 tRNA synthetases class II (D, K and N) AMEC673_05540 PF01336 OB-fold nucleic acid binding domain AMEC673_05545 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMEC673_05545 PF02558 Ketopantoate reductase PanE/ApbA AMEC673_05550 PF00849 RNA pseudouridylate synthase AMEC673_05560 PF00675 Insulinase (Peptidase family M16) AMEC673_05560 PF05193 Peptidase M16 inactive domain AMEC673_05565 PF04262 Glutamate-cysteine ligase AMEC673_05590 PF01713 Smr domain AMEC673_05595 PF05175 Methyltransferase small domain AMEC673_05600 PF01264 Chorismate synthase AMEC673_05610 PF04293 SpoVR like protein AMEC673_05615 PF04285 Protein of unknown function (DUF444) AMEC673_05620 PF08298 PrkA AAA domain AMEC673_05620 PF06798 PrkA serine protein kinase C-terminal domain AMEC673_05630 PF00462 Glutaredoxin AMEC673_05635 PF07715 TonB-dependent Receptor Plug Domain AMEC673_05635 PF00593 TonB dependent receptor AMEC673_05655 PF04324 BFD-like [2Fe-2S] binding domain AMEC673_05660 PF00578 AhpC/TSA family AMEC673_05660 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMEC673_05665 PF00929 Exonuclease AMEC673_05670 PF18393 MotY N-terminal domain AMEC673_05670 PF00691 OmpA family AMEC673_05675 PF03009 Glycerophosphoryl diester phosphodiesterase family AMEC673_05680 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMEC673_05685 PF00106 short chain dehydrogenase AMEC673_05690 PF00313 'Cold-shock' DNA-binding domain AMEC673_05700 PF04389 Peptidase family M28 AMEC673_05700 PF02225 PA domain AMEC673_05705 PF10576 Iron-sulfur binding domain of endonuclease III AMEC673_05705 PF00730 HhH-GPD superfamily base excision DNA repair protein AMEC673_05705 PF00633 Helix-hairpin-helix motif AMEC673_05710 PF02508 Rnf-Nqr subunit, membrane protein AMEC673_05715 PF04205 FMN-binding domain AMEC673_05720 PF03116 NQR2, RnfD, RnfE family AMEC673_05725 PF13375 RnfC Barrel sandwich hybrid domain AMEC673_05725 PF10531 SLBB domain AMEC673_05725 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMEC673_05725 PF12838 4Fe-4S dicluster domain AMEC673_05730 PF04060 Putative Fe-S cluster AMEC673_05740 PF01554 MatE AMEC673_05745 PF17757 UvrB interaction domain AMEC673_05745 PF12344 Ultra-violet resistance protein B AMEC673_05745 PF00271 Helicase conserved C-terminal domain AMEC673_05745 PF04851 Type III restriction enzyme, res subunit AMEC673_05745 PF02151 UvrB/uvrC motif AMEC673_05755 PF06508 Queuosine biosynthesis protein QueC AMEC673_05760 PF04055 Radical SAM superfamily AMEC673_05770 PF13537 Glutamine amidotransferase domain AMEC673_05770 PF00733 Asparagine synthase AMEC673_05790 PF02080 TrkA-C domain AMEC673_05790 PF03600 Citrate transporter AMEC673_05795 PF00009 Elongation factor Tu GTP binding domain AMEC673_05800 PF00459 Inositol monophosphatase family AMEC673_05810 PF01507 Phosphoadenosine phosphosulfate reductase family AMEC673_05815 PF00474 Sodium:solute symporter family AMEC673_05820 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_05820 PF00072 Response regulator receiver domain AMEC673_05830 PF04542 Sigma-70 region 2 AMEC673_05830 PF08281 Sigma-70, region 4 AMEC673_05845 PF07584 Aerotolerance regulator N-terminal AMEC673_05845 PF13519 von Willebrand factor type A domain AMEC673_05850 PF00092 von Willebrand factor type A domain AMEC673_05860 PF01882 Protein of unknown function DUF58 AMEC673_05865 PF07726 ATPase family associated with various cellular activities (AAA) AMEC673_05865 PF17863 AAA lid domain AMEC673_05870 PF02803 Thiolase, C-terminal domain AMEC673_05870 PF00108 Thiolase, N-terminal domain AMEC673_05875 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMEC673_05875 PF00378 Enoyl-CoA hydratase/isomerase AMEC673_05875 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMEC673_05885 PF03707 Bacterial signalling protein N terminal repeat AMEC673_05885 PF00563 EAL domain AMEC673_05885 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_05890 PF05193 Peptidase M16 inactive domain AMEC673_05890 PF00675 Insulinase (Peptidase family M16) AMEC673_05895 PF00300 Histidine phosphatase superfamily (branch 1) AMEC673_05905 PF03471 Transporter associated domain AMEC673_05905 PF00571 CBS domain AMEC673_05905 PF01595 Cyclin M transmembrane N-terminal domain AMEC673_05910 PF01578 Cytochrome C assembly protein AMEC673_05915 PF00448 SRP54-type protein, GTPase domain AMEC673_05915 PF02881 SRP54-type protein, helical bundle domain AMEC673_05915 PF02978 Signal peptide binding domain AMEC673_05950 PF00873 AcrB/AcrD/AcrF family AMEC673_05955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMEC673_05960 PF00664 ABC transporter transmembrane region AMEC673_05960 PF00005 ABC transporter AMEC673_05975 PF00886 Ribosomal protein S16 AMEC673_05980 PF05239 PRC-barrel domain AMEC673_05980 PF01782 RimM N-terminal domain AMEC673_05985 PF01746 tRNA (Guanine-1)-methyltransferase AMEC673_05990 PF01245 Ribosomal protein L19 AMEC673_05995 PF03458 UPF0126 domain AMEC673_06000 PF00378 Enoyl-CoA hydratase/isomerase AMEC673_06005 PF00793 DAHP synthetase I family AMEC673_06010 PF02153 Prephenate dehydrogenase AMEC673_06010 PF01817 Chorismate mutase type II AMEC673_06035 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_06035 PF17151 Periplasmic sensor domain AMEC673_06040 PF01817 Chorismate mutase type II AMEC673_06040 PF00800 Prephenate dehydratase AMEC673_06045 PF00072 Response regulator receiver domain AMEC673_06050 PF01253 Translation initiation factor SUI1 AMEC673_06060 PF00072 Response regulator receiver domain AMEC673_06060 PF00486 Transcriptional regulatory protein, C terminal AMEC673_06070 PF03707 Bacterial signalling protein N terminal repeat AMEC673_06070 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_06070 PF00563 EAL domain AMEC673_06080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_06080 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_06090 PF00158 Sigma-54 interaction domain AMEC673_06090 PF00072 Response regulator receiver domain AMEC673_06105 PF01336 OB-fold nucleic acid binding domain AMEC673_06105 PF00152 tRNA synthetases class II (D, K and N) AMEC673_06105 PF02938 GAD domain AMEC673_06110 PF00293 NUDIX domain AMEC673_06115 PF02075 Crossover junction endodeoxyribonuclease RuvC AMEC673_06125 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMEC673_06125 PF17864 RuvB AAA lid domain AMEC673_06125 PF05491 RuvB C-terminal winged helix domain AMEC673_06130 PF03061 Thioesterase superfamily AMEC673_06135 PF01618 MotA/TolQ/ExbB proton channel family AMEC673_06140 PF02472 Biopolymer transport protein ExbD/TolR AMEC673_06150 PF07676 WD40-like Beta Propeller Repeat AMEC673_06150 PF04052 TolB amino-terminal domain AMEC673_06155 PF00691 OmpA family AMEC673_06160 PF13174 Tetratricopeptide repeat AMEC673_06160 PF16331 TolA binding protein trimerisation AMEC673_06165 PF02445 Quinolinate synthetase A protein AMEC673_06175 PF01734 Patatin-like phospholipase AMEC673_06180 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMEC673_06180 PF02558 Ketopantoate reductase PanE/ApbA AMEC673_06190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_06190 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_06190 PF09308 LuxQ, periplasmic AMEC673_06190 PF00072 Response regulator receiver domain AMEC673_06200 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMEC673_06200 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMEC673_06205 PF01292 Prokaryotic cytochrome b561 AMEC673_06210 PF00563 EAL domain AMEC673_06210 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_06210 PF03707 Bacterial signalling protein N terminal repeat AMEC673_06225 PF01863 Protein of unknown function DUF45 AMEC673_06235 PF00873 AcrB/AcrD/AcrF family AMEC673_06245 PF08361 MAATS-type transcriptional repressor, C-terminal region AMEC673_06245 PF00440 Bacterial regulatory proteins, tetR family AMEC673_06250 PF07715 TonB-dependent Receptor Plug Domain AMEC673_06250 PF00593 TonB dependent receptor AMEC673_06275 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_06285 PF02470 MlaD protein AMEC673_06290 PF04403 Paraquat-inducible protein A AMEC673_06300 PF00152 tRNA synthetases class II (D, K and N) AMEC673_06300 PF01336 OB-fold nucleic acid binding domain AMEC673_06310 PF01699 Sodium/calcium exchanger protein AMEC673_06315 PF08443 RimK-like ATP-grasp domain AMEC673_06315 PF18030 RimK PreATP-grasp domain AMEC673_06335 PF00202 Aminotransferase class-III AMEC673_06340 PF06968 Biotin and Thiamin Synthesis associated domain AMEC673_06340 PF04055 Radical SAM superfamily AMEC673_06345 PF00155 Aminotransferase class I and II AMEC673_06350 PF08241 Methyltransferase domain AMEC673_06360 PF03575 Peptidase family S51 AMEC673_06365 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMEC673_06370 PF01032 FecCD transport family AMEC673_06375 PF00005 ABC transporter AMEC673_06380 PF01474 Class-II DAHP synthetase family AMEC673_06385 PF02702 Osmosensitive K+ channel His kinase sensor domain AMEC673_06385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_06385 PF13493 Domain of unknown function (DUF4118) AMEC673_06385 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_06390 PF00486 Transcriptional regulatory protein, C terminal AMEC673_06390 PF00072 Response regulator receiver domain AMEC673_06395 PF02254 TrkA-N domain AMEC673_06395 PF02080 TrkA-C domain AMEC673_06400 PF02386 Cation transport protein AMEC673_06415 PF00664 ABC transporter transmembrane region AMEC673_06415 PF00005 ABC transporter AMEC673_06420 PF06463 Molybdenum Cofactor Synthesis C AMEC673_06420 PF04055 Radical SAM superfamily AMEC673_06430 PF00072 Response regulator receiver domain AMEC673_06430 PF00486 Transcriptional regulatory protein, C terminal AMEC673_06435 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMEC673_06455 PF01207 Dihydrouridine synthase (Dus) AMEC673_06465 PF13472 GDSL-like Lipase/Acylhydrolase family AMEC673_06470 PF00005 ABC transporter AMEC673_06480 PF01370 NAD dependent epimerase/dehydratase family AMEC673_06480 PF08338 Domain of unknown function (DUF1731) AMEC673_06485 PF02152 Dihydroneopterin aldolase AMEC673_06490 PF01594 AI-2E family transporter AMEC673_06495 PF08918 PhoQ Sensor AMEC673_06495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_06500 PF00072 Response regulator receiver domain AMEC673_06500 PF00486 Transcriptional regulatory protein, C terminal AMEC673_06515 PF03795 YCII-related domain AMEC673_06520 PF00290 Tryptophan synthase alpha chain AMEC673_06525 PF00291 Pyridoxal-phosphate dependent enzyme AMEC673_06530 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMEC673_06530 PF00218 Indole-3-glycerol phosphate synthase AMEC673_06535 PF02885 Glycosyl transferase family, helical bundle domain AMEC673_06535 PF00591 Glycosyl transferase family, a/b domain AMEC673_06540 PF00117 Glutamine amidotransferase class-I AMEC673_06545 PF04715 Anthranilate synthase component I, N terminal region AMEC673_06545 PF00425 chorismate binding enzyme AMEC673_06550 PF02811 PHP domain AMEC673_06555 PF01300 Telomere recombination AMEC673_06560 PF02616 Segregation and condensation protein ScpA AMEC673_06565 PF04079 Segregation and condensation complex subunit ScpB AMEC673_06570 PF01479 S4 domain AMEC673_06570 PF00849 RNA pseudouridylate synthase AMEC673_06575 PF00248 Aldo/keto reductase family AMEC673_06580 PF14602 Hexapeptide repeat of succinyl-transferase AMEC673_06580 PF12464 Maltose acetyltransferase AMEC673_06590 PF03960 ArsC family AMEC673_06595 PF04286 Protein of unknown function (DUF445) AMEC673_06600 PF05724 Thiopurine S-methyltransferase (TPMT) AMEC673_06605 PF04355 SmpA / OmlA family AMEC673_06610 PF02463 RecF/RecN/SMC N terminal domain AMEC673_06615 PF00210 Ferritin-like domain AMEC673_06630 PF00465 Iron-containing alcohol dehydrogenase AMEC673_06645 PF00561 alpha/beta hydrolase fold AMEC673_06655 PF07715 TonB-dependent Receptor Plug Domain AMEC673_06655 PF00593 TonB dependent receptor AMEC673_06660 PF00072 Response regulator receiver domain AMEC673_06660 PF00196 Bacterial regulatory proteins, luxR family AMEC673_06670 PF01627 Hpt domain AMEC673_06670 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_06670 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMEC673_06670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_06670 PF00072 Response regulator receiver domain AMEC673_06680 PF01025 GrpE AMEC673_06685 PF00012 Hsp70 protein AMEC673_06690 PF01556 DnaJ C terminal domain AMEC673_06690 PF00226 DnaJ domain AMEC673_06690 PF00684 DnaJ central domain AMEC673_06695 PF01322 Cytochrome C' AMEC673_06705 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_06705 PF13426 PAS domain AMEC673_06705 PF00563 EAL domain AMEC673_06710 PF00501 AMP-binding enzyme AMEC673_06710 PF13193 AMP-binding enzyme C-terminal domain AMEC673_06710 PF16177 Acetyl-coenzyme A synthetase N-terminus AMEC673_06720 PF01113 Dihydrodipicolinate reductase, N-terminus AMEC673_06720 PF05173 Dihydrodipicolinate reductase, C-terminus AMEC673_06725 PF00117 Glutamine amidotransferase class-I AMEC673_06725 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMEC673_06730 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMEC673_06730 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMEC673_06730 PF02142 MGS-like domain AMEC673_06735 PF01272 Transcription elongation factor, GreA/GreB, C-term AMEC673_06735 PF03449 Transcription elongation factor, N-terminal AMEC673_06745 PF12729 Four helix bundle sensory module for signal transduction AMEC673_06745 PF00672 HAMP domain AMEC673_06745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_06765 PF00011 Hsp20/alpha crystallin family AMEC673_06770 PF00871 Acetokinase family AMEC673_06775 PF07085 DRTGG domain AMEC673_06775 PF01515 Phosphate acetyl/butaryl transferase AMEC673_06780 PF01979 Amidohydrolase family AMEC673_06785 PF00795 Carbon-nitrogen hydrolase AMEC673_06790 PF00571 CBS domain AMEC673_06790 PF03471 Transporter associated domain AMEC673_06795 PF02130 Uncharacterized protein family UPF0054 AMEC673_06800 PF02562 PhoH-like protein AMEC673_06805 PF04055 Radical SAM superfamily AMEC673_06805 PF01938 TRAM domain AMEC673_06805 PF00919 Uncharacterized protein family UPF0004 AMEC673_06810 PF01494 FAD binding domain AMEC673_06850 PF00593 TonB dependent receptor AMEC673_06850 PF07715 TonB-dependent Receptor Plug Domain AMEC673_06855 PF03061 Thioesterase superfamily AMEC673_06860 PF01613 Flavin reductase like domain AMEC673_06865 PF01638 HxlR-like helix-turn-helix AMEC673_06880 PF01235 Sodium:alanine symporter family AMEC673_06890 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMEC673_06895 PF06071 Protein of unknown function (DUF933) AMEC673_06895 PF01926 50S ribosome-binding GTPase AMEC673_06900 PF01195 Peptidyl-tRNA hydrolase AMEC673_06905 PF14693 Ribosomal protein TL5, C-terminal domain AMEC673_06905 PF01386 Ribosomal L25p family AMEC673_06910 PF08240 Alcohol dehydrogenase GroES-like domain AMEC673_06910 PF00107 Zinc-binding dehydrogenase AMEC673_06920 PF14572 Phosphoribosyl synthetase-associated domain AMEC673_06920 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMEC673_06925 PF08544 GHMP kinases C terminal AMEC673_06925 PF00288 GHMP kinases N terminal domain AMEC673_06930 PF03550 Outer membrane lipoprotein LolB AMEC673_06935 PF01488 Shikimate / quinate 5-dehydrogenase AMEC673_06935 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMEC673_06935 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMEC673_06940 PF00472 RF-1 domain AMEC673_06940 PF03462 PCRF domain AMEC673_06945 PF13847 Methyltransferase domain AMEC673_06945 PF17827 PrmC N-terminal domain AMEC673_06950 PF11849 Domain of unknown function (DUF3369) AMEC673_06955 PF04247 Invasion gene expression up-regulator, SirB AMEC673_06970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_06970 PF03466 LysR substrate binding domain AMEC673_06980 PF04241 Protein of unknown function (DUF423) AMEC673_06985 PF01728 FtsJ-like methyltransferase AMEC673_06985 PF18125 RlmM ferredoxin-like domain AMEC673_06990 PF03764 Elongation factor G, domain IV AMEC673_06990 PF03144 Elongation factor Tu domain 2 AMEC673_06990 PF00009 Elongation factor Tu GTP binding domain AMEC673_06990 PF00679 Elongation factor G C-terminus AMEC673_06990 PF14492 Elongation Factor G, domain II AMEC673_06995 PF02560 Cyanate lyase C-terminal domain AMEC673_07000 PF00069 Protein kinase domain AMEC673_07005 PF01226 Formate/nitrite transporter AMEC673_07010 PF11992 Domain of unknown function (DUF3488) AMEC673_07010 PF13559 Domain of unknown function (DUF4129) AMEC673_07010 PF01841 Transglutaminase-like superfamily AMEC673_07020 PF17863 AAA lid domain AMEC673_07020 PF07726 ATPase family associated with various cellular activities (AAA) AMEC673_07030 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMEC673_07030 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMEC673_07030 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMEC673_07030 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMEC673_07035 PF00343 Carbohydrate phosphorylase AMEC673_07040 PF03707 Bacterial signalling protein N terminal repeat AMEC673_07040 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_07040 PF00563 EAL domain AMEC673_07045 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMEC673_07055 PF01906 Putative heavy-metal-binding AMEC673_07060 PF00375 Sodium:dicarboxylate symporter family AMEC673_07075 PF07687 Peptidase dimerisation domain AMEC673_07075 PF01546 Peptidase family M20/M25/M40 AMEC673_07080 PF03960 ArsC family AMEC673_07100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMEC673_07105 PF04209 homogentisate 1,2-dioxygenase AMEC673_07120 PF00563 EAL domain AMEC673_07120 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_07120 PF03707 Bacterial signalling protein N terminal repeat AMEC673_07125 PF03707 Bacterial signalling protein N terminal repeat AMEC673_07125 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_07125 PF00563 EAL domain AMEC673_07130 PF12706 Beta-lactamase superfamily domain AMEC673_07135 PF00873 AcrB/AcrD/AcrF family AMEC673_07145 PF00999 Sodium/hydrogen exchanger family AMEC673_07145 PF02254 TrkA-N domain AMEC673_07150 PF02525 Flavodoxin-like fold AMEC673_07165 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMEC673_07170 PF00111 2Fe-2S iron-sulfur cluster binding domain AMEC673_07170 PF01799 [2Fe-2S] binding domain AMEC673_07175 PF01638 HxlR-like helix-turn-helix AMEC673_07185 PF00563 EAL domain AMEC673_07185 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_07185 PF05231 MASE1 AMEC673_07185 PF13426 PAS domain AMEC673_07185 PF08447 PAS fold AMEC673_07185 PF08448 PAS fold AMEC673_07195 PF01979 Amidohydrolase family AMEC673_07200 PF00576 HIUase/Transthyretin family AMEC673_07215 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMEC673_07215 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMEC673_07220 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMEC673_07220 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMEC673_07220 PF00111 2Fe-2S iron-sulfur cluster binding domain AMEC673_07220 PF01799 [2Fe-2S] binding domain AMEC673_07225 PF00440 Bacterial regulatory proteins, tetR family AMEC673_07225 PF08362 YcdC-like protein, C-terminal region AMEC673_07240 PF00860 Permease family AMEC673_07245 PF00962 Adenosine/AMP deaminase AMEC673_07255 PF03707 Bacterial signalling protein N terminal repeat AMEC673_07255 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_07255 PF00563 EAL domain AMEC673_07260 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_07260 PF00072 Response regulator receiver domain AMEC673_07265 PF00072 Response regulator receiver domain AMEC673_07265 PF09308 LuxQ, periplasmic AMEC673_07265 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_07265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_07275 PF00593 TonB dependent receptor AMEC673_07275 PF07715 TonB-dependent Receptor Plug Domain AMEC673_07280 PF00860 Permease family AMEC673_07285 PF00962 Adenosine/AMP deaminase AMEC673_07295 PF01546 Peptidase family M20/M25/M40 AMEC673_07295 PF07687 Peptidase dimerisation domain AMEC673_07300 PF00266 Aminotransferase class-V AMEC673_07305 PF01925 Sulfite exporter TauE/SafE AMEC673_07315 PF01425 Amidase AMEC673_07360 PF02824 TGS domain AMEC673_07360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMEC673_07360 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMEC673_07360 PF03129 Anticodon binding domain AMEC673_07365 PF05198 Translation initiation factor IF-3, N-terminal domain AMEC673_07365 PF00707 Translation initiation factor IF-3, C-terminal domain AMEC673_07370 PF01632 Ribosomal protein L35 AMEC673_07375 PF00453 Ribosomal protein L20 AMEC673_07380 PF00483 Nucleotidyl transferase AMEC673_07380 PF01050 Mannose-6-phosphate isomerase AMEC673_07385 PF02397 Bacterial sugar transferase AMEC673_07395 PF02563 Polysaccharide biosynthesis/export protein AMEC673_07395 PF10531 SLBB domain AMEC673_07395 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AMEC673_07400 PF13614 AAA domain AMEC673_07430 PF00563 EAL domain AMEC673_07430 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_07430 PF03707 Bacterial signalling protein N terminal repeat AMEC673_07440 PF00534 Glycosyl transferases group 1 AMEC673_07440 PF13439 Glycosyltransferase Family 4 AMEC673_07480 PF04230 Polysaccharide pyruvyl transferase AMEC673_07490 PF00534 Glycosyl transferases group 1 AMEC673_07490 PF13579 Glycosyl transferase 4-like domain AMEC673_07505 PF00535 Glycosyl transferase family 2 AMEC673_07510 PF01757 Acyltransferase family AMEC673_07520 PF01409 tRNA synthetases class II core domain (F) AMEC673_07520 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMEC673_07525 PF03483 B3/4 domain AMEC673_07525 PF03484 tRNA synthetase B5 domain AMEC673_07525 PF03147 Ferredoxin-fold anticodon binding domain AMEC673_07525 PF01588 Putative tRNA binding domain AMEC673_07525 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMEC673_07530 PF00216 Bacterial DNA-binding protein AMEC673_07540 PF04073 Aminoacyl-tRNA editing domain AMEC673_07545 PF01804 Penicillin amidase AMEC673_07550 PF00933 Glycosyl hydrolase family 3 N terminal domain AMEC673_07555 PF01923 Cobalamin adenosyltransferase AMEC673_07565 PF02559 CarD-like/TRCF domain AMEC673_07565 PF17757 UvrB interaction domain AMEC673_07565 PF03461 TRCF domain AMEC673_07565 PF00271 Helicase conserved C-terminal domain AMEC673_07565 PF00270 DEAD/DEAH box helicase AMEC673_07575 PF12704 MacB-like periplasmic core domain AMEC673_07575 PF02687 FtsX-like permease family AMEC673_07585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_07585 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_07585 PF08448 PAS fold AMEC673_07585 PF13188 PAS domain AMEC673_07585 PF00072 Response regulator receiver domain AMEC673_07600 PF03372 Endonuclease/Exonuclease/phosphatase family AMEC673_07635 PF07690 Major Facilitator Superfamily AMEC673_07645 PF00483 Nucleotidyl transferase AMEC673_07665 PF00682 HMGL-like AMEC673_07670 PF00364 Biotin-requiring enzyme AMEC673_07670 PF00289 Biotin carboxylase, N-terminal domain AMEC673_07670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMEC673_07670 PF02785 Biotin carboxylase C-terminal domain AMEC673_07675 PF00378 Enoyl-CoA hydratase/isomerase AMEC673_07680 PF01039 Carboxyl transferase domain AMEC673_07685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMEC673_07685 PF02770 Acyl-CoA dehydrogenase, middle domain AMEC673_07685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMEC673_07690 PF13411 MerR HTH family regulatory protein AMEC673_07695 PF02803 Thiolase, C-terminal domain AMEC673_07695 PF00108 Thiolase, N-terminal domain AMEC673_07705 PF00266 Aminotransferase class-V AMEC673_07720 PF08411 Exonuclease C-terminal AMEC673_07720 PF00929 Exonuclease AMEC673_07725 PF01627 Hpt domain AMEC673_07725 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_07725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_07725 PF00672 HAMP domain AMEC673_07725 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMEC673_07725 PF00072 Response regulator receiver domain AMEC673_07730 PF01112 Asparaginase AMEC673_07755 PF02796 Helix-turn-helix domain of resolvase AMEC673_07755 PF00239 Resolvase, N terminal domain AMEC673_07760 PF00075 RNase H AMEC673_07770 PF01112 Asparaginase AMEC673_07780 PF02333 Phytase AMEC673_07795 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AMEC673_07795 PF12833 Helix-turn-helix domain AMEC673_07805 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMEC673_07805 PF00270 DEAD/DEAH box helicase AMEC673_07805 PF00271 Helicase conserved C-terminal domain AMEC673_07805 PF04408 Helicase associated domain (HA2) AMEC673_07805 PF11898 Domain of unknown function (DUF3418) AMEC673_07820 PF17785 PUA-like domain AMEC673_07820 PF10672 S-adenosylmethionine-dependent methyltransferase AMEC673_07825 PF00550 Phosphopantetheine attachment site AMEC673_07825 PF14765 Polyketide synthase dehydratase AMEC673_07825 PF02801 Beta-ketoacyl synthase, C-terminal domain AMEC673_07825 PF00109 Beta-ketoacyl synthase, N-terminal domain AMEC673_07825 PF16197 Ketoacyl-synthetase C-terminal extension AMEC673_07825 PF08240 Alcohol dehydrogenase GroES-like domain AMEC673_07825 PF00698 Acyl transferase domain AMEC673_07825 PF08659 KR domain AMEC673_07830 PF00075 RNase H AMEC673_07835 PF00929 Exonuclease AMEC673_07845 PF12792 CSS motif domain associated with EAL AMEC673_07845 PF00563 EAL domain AMEC673_07850 PF00005 ABC transporter AMEC673_07855 PF12704 MacB-like periplasmic core domain AMEC673_07855 PF02687 FtsX-like permease family AMEC673_07860 PF00375 Sodium:dicarboxylate symporter family AMEC673_07870 PF04996 Succinylarginine dihydrolase AMEC673_07875 PF01131 DNA topoisomerase AMEC673_07875 PF08272 Topoisomerase I zinc-ribbon-like AMEC673_07875 PF01751 Toprim domain AMEC673_07875 PF01396 Topoisomerase DNA binding C4 zinc finger AMEC673_07880 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AMEC673_07890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_07890 PF03466 LysR substrate binding domain AMEC673_07895 PF12804 MobA-like NTP transferase domain AMEC673_07900 PF02634 FdhD/NarQ family AMEC673_07905 PF00384 Molybdopterin oxidoreductase AMEC673_07915 PF02798 Glutathione S-transferase, N-terminal domain AMEC673_07925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_07925 PF03466 LysR substrate binding domain AMEC673_07930 PF13673 Acetyltransferase (GNAT) domain AMEC673_07935 PF13419 Haloacid dehalogenase-like hydrolase AMEC673_07940 PF00486 Transcriptional regulatory protein, C terminal AMEC673_07940 PF00072 Response regulator receiver domain AMEC673_07945 PF18698 Histidine kinase sensor domain AMEC673_07945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_07945 PF00989 PAS fold AMEC673_07945 PF00672 HAMP domain AMEC673_07945 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_07955 PF12111 Polyribonucleotide phosphorylase C terminal AMEC673_07955 PF00575 S1 RNA binding domain AMEC673_07955 PF10150 Ribonuclease E/G family AMEC673_07960 PF01479 S4 domain AMEC673_07960 PF00849 RNA pseudouridylate synthase AMEC673_07965 PF13419 Haloacid dehalogenase-like hydrolase AMEC673_07970 PF02545 Maf-like protein AMEC673_07975 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMEC673_07980 PF01783 Ribosomal L32p protein family AMEC673_07985 PF02504 Fatty acid synthesis protein AMEC673_07990 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMEC673_07990 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMEC673_07995 PF00698 Acyl transferase domain AMEC673_08005 PF00550 Phosphopantetheine attachment site AMEC673_08010 PF02801 Beta-ketoacyl synthase, C-terminal domain AMEC673_08010 PF00109 Beta-ketoacyl synthase, N-terminal domain AMEC673_08015 PF01063 Amino-transferase class IV AMEC673_08020 PF02618 YceG-like family AMEC673_08025 PF02223 Thymidylate kinase AMEC673_08030 PF09115 DNA polymerase III, delta subunit, C terminal AMEC673_08035 PF01026 TatD related DNase AMEC673_08040 PF01243 Pyridoxamine 5'-phosphate oxidase AMEC673_08040 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMEC673_08045 PF13460 NAD(P)H-binding AMEC673_08050 PF08448 PAS fold AMEC673_08050 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_08080 PF00561 alpha/beta hydrolase fold AMEC673_08085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMEC673_08085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMEC673_08085 PF00378 Enoyl-CoA hydratase/isomerase AMEC673_08090 PF02803 Thiolase, C-terminal domain AMEC673_08090 PF00108 Thiolase, N-terminal domain AMEC673_08095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMEC673_08095 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMEC673_08095 PF02770 Acyl-CoA dehydrogenase, middle domain AMEC673_08095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMEC673_08100 PF00561 alpha/beta hydrolase fold AMEC673_08115 PF04198 Putative sugar-binding domain AMEC673_08120 PF13419 Haloacid dehalogenase-like hydrolase AMEC673_08130 PF01232 Mannitol dehydrogenase Rossmann domain AMEC673_08130 PF08125 Mannitol dehydrogenase C-terminal domain AMEC673_08145 PF01979 Amidohydrolase family AMEC673_08150 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMEC673_08150 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMEC673_08155 PF01565 FAD binding domain AMEC673_08155 PF02913 FAD linked oxidases, C-terminal domain AMEC673_08155 PF13183 4Fe-4S dicluster domain AMEC673_08165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_08165 PF03466 LysR substrate binding domain AMEC673_08180 PF00924 Mechanosensitive ion channel AMEC673_08185 PF00593 TonB dependent receptor AMEC673_08185 PF07715 TonB-dependent Receptor Plug Domain AMEC673_08190 PF01329 Pterin 4 alpha carbinolamine dehydratase AMEC673_08195 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_08195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_08195 PF00072 Response regulator receiver domain AMEC673_08195 PF01627 Hpt domain AMEC673_08200 PF00072 Response regulator receiver domain AMEC673_08205 PF02576 RimP N-terminal domain AMEC673_08205 PF17384 RimP C-terminal SH3 domain AMEC673_08210 PF13184 NusA-like KH domain AMEC673_08210 PF08529 NusA N-terminal domain AMEC673_08210 PF00575 S1 RNA binding domain AMEC673_08215 PF00009 Elongation factor Tu GTP binding domain AMEC673_08215 PF08364 Bacterial translation initiation factor IF-2 associated region AMEC673_08215 PF11987 Translation-initiation factor 2 AMEC673_08215 PF04760 Translation initiation factor IF-2, N-terminal region AMEC673_08220 PF02033 Ribosome-binding factor A AMEC673_08225 PF09157 Pseudouridine synthase II TruB, C-terminal AMEC673_08225 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMEC673_08225 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMEC673_08235 PF00312 Ribosomal protein S15 AMEC673_08240 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_08240 PF00563 EAL domain AMEC673_08240 PF03707 Bacterial signalling protein N terminal repeat AMEC673_08245 PF01479 S4 domain AMEC673_08245 PF00849 RNA pseudouridylate synthase AMEC673_08255 PF00795 Carbon-nitrogen hydrolase AMEC673_08255 PF00583 Acetyltransferase (GNAT) family AMEC673_08285 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMEC673_08285 PF00578 AhpC/TSA family AMEC673_08290 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMEC673_08290 PF13192 Thioredoxin domain AMEC673_08295 PF07715 TonB-dependent Receptor Plug Domain AMEC673_08295 PF00593 TonB dependent receptor AMEC673_08330 PF11842 Domain of unknown function (DUF3362) AMEC673_08330 PF04055 Radical SAM superfamily AMEC673_08330 PF08497 Radical SAM N-terminal AMEC673_08345 PF00593 TonB dependent receptor AMEC673_08345 PF07715 TonB-dependent Receptor Plug Domain AMEC673_08350 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMEC673_08350 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMEC673_08360 PF13416 Bacterial extracellular solute-binding protein AMEC673_08370 PF00005 ABC transporter AMEC673_08375 PF01066 CDP-alcohol phosphatidyltransferase AMEC673_08385 PF01223 DNA/RNA non-specific endonuclease AMEC673_08415 PF03466 LysR substrate binding domain AMEC673_08415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_08425 PF07715 TonB-dependent Receptor Plug Domain AMEC673_08425 PF00593 TonB dependent receptor AMEC673_08440 PF00005 ABC transporter AMEC673_08445 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMEC673_08450 PF01668 SmpB protein AMEC673_08455 PF03364 Polyketide cyclase / dehydrase and lipid transport AMEC673_08460 PF03658 RnfH family Ubiquitin AMEC673_08470 PF02028 BCCT, betaine/carnitine/choline family transporter AMEC673_08475 PF07715 TonB-dependent Receptor Plug Domain AMEC673_08475 PF00593 TonB dependent receptor AMEC673_08480 PF13181 Tetratricopeptide repeat AMEC673_08500 PF03618 Kinase/pyrophosphorylase AMEC673_08505 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMEC673_08505 PF02896 PEP-utilising enzyme, TIM barrel domain AMEC673_08505 PF00391 PEP-utilising enzyme, mobile domain AMEC673_08515 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMEC673_08520 PF01799 [2Fe-2S] binding domain AMEC673_08520 PF00111 2Fe-2S iron-sulfur cluster binding domain AMEC673_08540 PF08007 Cupin superfamily protein AMEC673_08545 PF00211 Adenylate and Guanylate cyclase catalytic domain AMEC673_08550 PF08328 Adenylosuccinate lyase C-terminal AMEC673_08550 PF00206 Lyase AMEC673_08555 PF04356 Protein of unknown function (DUF489) AMEC673_08565 PF00849 RNA pseudouridylate synthase AMEC673_08570 PF03971 Monomeric isocitrate dehydrogenase AMEC673_08575 PF00313 'Cold-shock' DNA-binding domain AMEC673_08580 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMEC673_08585 PF10431 C-terminal, D2-small domain, of ClpB protein AMEC673_08585 PF00004 ATPase family associated with various cellular activities (AAA) AMEC673_08585 PF02861 Clp amino terminal domain, pathogenicity island component AMEC673_08585 PF07724 AAA domain (Cdc48 subfamily) AMEC673_08585 PF17871 AAA lid domain AMEC673_08590 PF01176 Translation initiation factor 1A / IF-1 AMEC673_08595 PF04377 Arginine-tRNA-protein transferase, C terminus AMEC673_08595 PF04376 Arginine-tRNA-protein transferase, N terminus AMEC673_08600 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMEC673_08605 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMEC673_08610 PF04217 Protein of unknown function, DUF412 AMEC673_08615 PF01343 Peptidase family S49 AMEC673_08630 PF00881 Nitroreductase family AMEC673_08640 PF00710 Asparaginase, N-terminal AMEC673_08640 PF17763 Glutaminase/Asparaginase C-terminal domain AMEC673_08645 PF04055 Radical SAM superfamily AMEC673_08645 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMEC673_08650 PF03099 Biotin/lipoate A/B protein ligase family AMEC673_08655 PF04359 Protein of unknown function (DUF493) AMEC673_08660 PF07943 Penicillin-binding protein 5, C-terminal domain AMEC673_08660 PF00768 D-alanyl-D-alanine carboxypeptidase AMEC673_08665 PF05036 Sporulation related domain AMEC673_08665 PF03330 Lytic transglycolase AMEC673_08670 PF01098 Cell cycle protein AMEC673_08675 PF03717 Penicillin-binding Protein dimerisation domain AMEC673_08675 PF00905 Penicillin binding protein transpeptidase domain AMEC673_08680 PF02590 Predicted SPOUT methyltransferase AMEC673_08690 PF01467 Cytidylyltransferase-like AMEC673_08695 PF06144 DNA polymerase III, delta subunit AMEC673_08695 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AMEC673_08700 PF04390 Lipopolysaccharide-assembly AMEC673_08705 PF00133 tRNA synthetases class I (I, L, M and V) AMEC673_08705 PF13603 Leucyl-tRNA synthetase, Domain 2 AMEC673_08705 PF08264 Anticodon-binding domain of tRNA AMEC673_08715 PF13654 AAA domain AMEC673_08715 PF05362 Lon protease (S16) C-terminal proteolytic domain AMEC673_08730 PF00665 Integrase core domain AMEC673_08730 PF13276 HTH-like domain AMEC673_08730 PF13333 Integrase core domain AMEC673_08740 PF00106 short chain dehydrogenase AMEC673_08745 PF01985 CRS1 / YhbY (CRM) domain AMEC673_08750 PF01728 FtsJ-like methyltransferase AMEC673_08755 PF01434 Peptidase family M41 AMEC673_08755 PF06480 FtsH Extracellular AMEC673_08755 PF17862 AAA+ lid domain AMEC673_08755 PF00004 ATPase family associated with various cellular activities (AAA) AMEC673_08760 PF00809 Pterin binding enzyme AMEC673_08765 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMEC673_08765 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMEC673_08765 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMEC673_08765 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMEC673_08770 PF00121 Triosephosphate isomerase AMEC673_08775 PF03840 Preprotein translocase SecG subunit AMEC673_08850 PF07030 Protein of unknown function (DUF1320) AMEC673_08860 PF10124 Mu-like prophage major head subunit gpT AMEC673_08865 PF10123 Mu-like prophage I protein AMEC673_08890 PF06074 Protein of unknown function (DUF935) AMEC673_08895 PF03237 Terminase-like family AMEC673_08900 PF11985 Protein of unknown function (DUF3486) AMEC673_09000 PF13693 Winged helix-turn-helix DNA-binding AMEC673_09010 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_09010 PF03707 Bacterial signalling protein N terminal repeat AMEC673_09010 PF00563 EAL domain AMEC673_09015 PF01679 Proteolipid membrane potential modulator AMEC673_09025 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMEC673_09025 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMEC673_09030 PF02142 MGS-like domain AMEC673_09030 PF00781 Diacylglycerol kinase catalytic domain AMEC673_09060 PF00474 Sodium:solute symporter family AMEC673_09085 PF00013 KH domain AMEC673_09085 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMEC673_09085 PF01138 3' exoribonuclease family, domain 1 AMEC673_09085 PF00575 S1 RNA binding domain AMEC673_09085 PF03725 3' exoribonuclease family, domain 2 AMEC673_09255 PF07690 Major Facilitator Superfamily AMEC673_09270 PF03544 Gram-negative bacterial TonB protein C-terminal AMEC673_09290 PF07719 Tetratricopeptide repeat AMEC673_09290 PF13181 Tetratricopeptide repeat AMEC673_09305 PF06470 SMC proteins Flexible Hinge Domain AMEC673_09305 PF02463 RecF/RecN/SMC N terminal domain AMEC673_09310 PF04354 ZipA, C-terminal FtsZ-binding domain AMEC673_09315 PF00533 BRCA1 C Terminus (BRCT) domain AMEC673_09315 PF01653 NAD-dependent DNA ligase adenylation domain AMEC673_09315 PF12826 Helix-hairpin-helix motif AMEC673_09315 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMEC673_09315 PF03120 NAD-dependent DNA ligase OB-fold domain AMEC673_09330 PF00005 ABC transporter AMEC673_09330 PF00664 ABC transporter transmembrane region AMEC673_09335 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMEC673_09340 PF03966 Trm112p-like protein AMEC673_09345 PF02348 Cytidylyltransferase AMEC673_09360 PF00919 Uncharacterized protein family UPF0004 AMEC673_09360 PF18693 TRAM domain AMEC673_09360 PF04055 Radical SAM superfamily AMEC673_09375 PF00899 ThiF family AMEC673_09380 PF13409 Glutathione S-transferase, N-terminal domain AMEC673_09385 PF05726 Pirin C-terminal cupin domain AMEC673_09385 PF02678 Pirin AMEC673_09395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMEC673_09395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMEC673_09395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMEC673_09395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMEC673_09410 PF00285 Citrate synthase, C-terminal domain AMEC673_09415 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMEC673_09420 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMEC673_09425 PF02910 Fumarate reductase flavoprotein C-term AMEC673_09425 PF00890 FAD binding domain AMEC673_09430 PF13085 2Fe-2S iron-sulfur cluster binding domain AMEC673_09435 PF16870 2-oxoglutarate dehydrogenase C-terminal AMEC673_09435 PF16078 2-oxoglutarate dehydrogenase N-terminus AMEC673_09435 PF00676 Dehydrogenase E1 component AMEC673_09435 PF02779 Transketolase, pyrimidine binding domain AMEC673_09440 PF02817 e3 binding domain AMEC673_09440 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMEC673_09440 PF00364 Biotin-requiring enzyme AMEC673_09445 PF00549 CoA-ligase AMEC673_09445 PF08442 ATP-grasp domain AMEC673_09450 PF00549 CoA-ligase AMEC673_09450 PF02629 CoA binding domain AMEC673_09460 PF04820 Tryptophan halogenase AMEC673_09470 PF18494 Pullulanase Ins domain AMEC673_09470 PF03714 Bacterial pullanase-associated domain AMEC673_09470 PF11852 Domain of unknown function (DUF3372) AMEC673_09470 PF17967 Pullulanase N2 domain AMEC673_09470 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMEC673_09475 PF01734 Patatin-like phospholipase AMEC673_09490 PF00128 Alpha amylase, catalytic domain AMEC673_09490 PF16657 Maltogenic Amylase, C-terminal domain AMEC673_09490 PF02903 Alpha amylase, N-terminal ig-like domain AMEC673_09495 PF00128 Alpha amylase, catalytic domain AMEC673_09495 PF10438 Cyclo-malto-dextrinase C-terminal domain AMEC673_09495 PF09087 Cyclomaltodextrinase, N-terminal AMEC673_09505 PF00686 Starch binding domain AMEC673_09505 PF02806 Alpha amylase, C-terminal all-beta domain AMEC673_09505 PF00128 Alpha amylase, catalytic domain AMEC673_09505 PF01833 IPT/TIG domain AMEC673_09510 PF00356 Bacterial regulatory proteins, lacI family AMEC673_09515 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMEC673_09515 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMEC673_09520 PF00106 short chain dehydrogenase AMEC673_09525 PF12262 Bacterial virulence factor lipase N-terminal AMEC673_09530 PF01804 Penicillin amidase AMEC673_09535 PF01343 Peptidase family S49 AMEC673_09535 PF08496 Peptidase family S49 N-terminal AMEC673_09550 PF01784 NIF3 (NGG1p interacting factor 3) AMEC673_09560 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMEC673_09560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMEC673_09565 PF00255 Glutathione peroxidase AMEC673_09570 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMEC673_09570 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMEC673_09580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMEC673_09580 PF02770 Acyl-CoA dehydrogenase, middle domain AMEC673_09580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMEC673_09585 PF00378 Enoyl-CoA hydratase/isomerase AMEC673_09590 PF13847 Methyltransferase domain AMEC673_09595 PF11893 Domain of unknown function (DUF3413) AMEC673_09595 PF00884 Sulfatase AMEC673_09600 PF07208 Protein of unknown function (DUF1414) AMEC673_09605 PF04245 37-kD nucleoid-associated bacterial protein AMEC673_09615 PF01464 Transglycosylase SLT domain AMEC673_09615 PF01551 Peptidase family M23 AMEC673_09615 PF10145 Phage-related minor tail protein AMEC673_09635 PF06580 Histidine kinase AMEC673_09635 PF07694 5TMR of 5TMR-LYT AMEC673_09640 PF04397 LytTr DNA-binding domain AMEC673_09640 PF00072 Response regulator receiver domain AMEC673_09645 PF00365 Phosphofructokinase AMEC673_09660 PF00072 Response regulator receiver domain AMEC673_09660 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_09660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_09660 PF00989 PAS fold AMEC673_09660 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMEC673_09660 PF01627 Hpt domain AMEC673_09685 PF02801 Beta-ketoacyl synthase, C-terminal domain AMEC673_09685 PF00109 Beta-ketoacyl synthase, N-terminal domain AMEC673_09685 PF08990 Erythronolide synthase docking AMEC673_09685 PF16197 Ketoacyl-synthetase C-terminal extension AMEC673_09685 PF08659 KR domain AMEC673_09685 PF08240 Alcohol dehydrogenase GroES-like domain AMEC673_09685 PF09277 Erythronolide synthase, docking AMEC673_09685 PF00550 Phosphopantetheine attachment site AMEC673_09685 PF14765 Polyketide synthase dehydratase AMEC673_09685 PF00698 Acyl transferase domain AMEC673_09690 PF14765 Polyketide synthase dehydratase AMEC673_09690 PF08240 Alcohol dehydrogenase GroES-like domain AMEC673_09690 PF00698 Acyl transferase domain AMEC673_09690 PF16197 Ketoacyl-synthetase C-terminal extension AMEC673_09690 PF02801 Beta-ketoacyl synthase, C-terminal domain AMEC673_09690 PF00109 Beta-ketoacyl synthase, N-terminal domain AMEC673_09690 PF08659 KR domain AMEC673_09690 PF00550 Phosphopantetheine attachment site AMEC673_09695 PF00106 short chain dehydrogenase AMEC673_09700 PF03466 LysR substrate binding domain AMEC673_09700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_09710 PF00270 DEAD/DEAH box helicase AMEC673_09710 PF00271 Helicase conserved C-terminal domain AMEC673_09715 PF01144 Coenzyme A transferase AMEC673_09720 PF01144 Coenzyme A transferase AMEC673_09725 PF03466 LysR substrate binding domain AMEC673_09725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_09740 PF03466 LysR substrate binding domain AMEC673_09740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_09745 PF03313 Serine dehydratase alpha chain AMEC673_09745 PF03315 Serine dehydratase beta chain AMEC673_09750 PF00293 NUDIX domain AMEC673_09755 PF00425 chorismate binding enzyme AMEC673_09755 PF04715 Anthranilate synthase component I, N terminal region AMEC673_09765 PF02646 RmuC family AMEC673_09770 PF00082 Subtilase family AMEC673_09770 PF02225 PA domain AMEC673_09770 PF05922 Peptidase inhibitor I9 AMEC673_09770 PF13860 FlgD Ig-like domain AMEC673_09775 PF00676 Dehydrogenase E1 component AMEC673_09780 PF02780 Transketolase, C-terminal domain AMEC673_09780 PF02779 Transketolase, pyrimidine binding domain AMEC673_09785 PF00364 Biotin-requiring enzyme AMEC673_09785 PF02817 e3 binding domain AMEC673_09785 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMEC673_09790 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMEC673_09795 PF00069 Protein kinase domain AMEC673_09805 PF00132 Bacterial transferase hexapeptide (six repeats) AMEC673_09810 PF00266 Aminotransferase class-V AMEC673_09820 PF13185 GAF domain AMEC673_09830 PF17516 ProQ C-terminal domain AMEC673_09830 PF04352 ProQ/FINO family AMEC673_09835 PF11818 C-terminal domain of tail specific protease (DUF3340) AMEC673_09835 PF17804 Tail specific protease N-terminal domain AMEC673_09835 PF00595 PDZ domain AMEC673_09835 PF03572 Peptidase family S41 AMEC673_09840 PF00209 Sodium:neurotransmitter symporter family AMEC673_09850 PF11940 Domain of unknown function (DUF3458) Ig-like fold AMEC673_09850 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AMEC673_09850 PF01433 Peptidase family M1 domain AMEC673_09865 PF07044 Protein of unknown function (DUF1329) AMEC673_09880 PF05088 Bacterial NAD-glutamate dehydrogenase AMEC673_09885 PF01180 Dihydroorotate dehydrogenase AMEC673_09890 PF02926 THUMP domain AMEC673_09890 PF01170 Putative RNA methylase family UPF0020 AMEC673_09890 PF10672 S-adenosylmethionine-dependent methyltransferase AMEC673_09910 PF04957 Ribosome modulation factor AMEC673_09915 PF07977 FabA-like domain AMEC673_09925 PF00875 DNA photolyase AMEC673_09925 PF03441 FAD binding domain of DNA photolyase AMEC673_09930 PF00875 DNA photolyase AMEC673_09930 PF03441 FAD binding domain of DNA photolyase AMEC673_09935 PF00875 DNA photolyase AMEC673_09935 PF03441 FAD binding domain of DNA photolyase AMEC673_09940 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AMEC673_09955 PF04183 IucA / IucC family AMEC673_09955 PF06276 Ferric iron reductase FhuF-like transporter AMEC673_09960 PF04183 IucA / IucC family AMEC673_09960 PF06276 Ferric iron reductase FhuF-like transporter AMEC673_09965 PF13193 AMP-binding enzyme C-terminal domain AMEC673_09965 PF00501 AMP-binding enzyme AMEC673_09975 PF01261 Xylose isomerase-like TIM barrel AMEC673_10000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_10000 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_10000 PF00672 HAMP domain AMEC673_10000 PF16750 Sensor domain of 2-component histidine kinase AMEC673_10005 PF00072 Response regulator receiver domain AMEC673_10005 PF00486 Transcriptional regulatory protein, C terminal AMEC673_10025 PF01219 Prokaryotic diacylglycerol kinase AMEC673_10030 PF00582 Universal stress protein family AMEC673_10040 PF01645 Conserved region in glutamate synthase AMEC673_10045 PF00999 Sodium/hydrogen exchanger family AMEC673_10050 PF00210 Ferritin-like domain AMEC673_10055 PF00210 Ferritin-like domain AMEC673_10065 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMEC673_10080 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AMEC673_10080 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMEC673_10090 PF00403 Heavy-metal-associated domain AMEC673_10105 PF13545 Crp-like helix-turn-helix domain AMEC673_10105 PF00027 Cyclic nucleotide-binding domain AMEC673_10110 PF00582 Universal stress protein family AMEC673_10115 PF01171 PP-loop family AMEC673_10120 PF01734 Patatin-like phospholipase AMEC673_10140 PF01810 LysE type translocator AMEC673_10145 PF02146 Sir2 family AMEC673_10150 PF00581 Rhodanese-like domain AMEC673_10155 PF08534 Redoxin AMEC673_10200 PF00589 Phage integrase family AMEC673_10205 PF04002 RadC-like JAB domain AMEC673_10210 PF00176 SNF2 family N-terminal domain AMEC673_10210 PF00271 Helicase conserved C-terminal domain AMEC673_10230 PF00589 Phage integrase family AMEC673_10230 PF13356 Arm DNA-binding domain AMEC673_10235 PF13356 Arm DNA-binding domain AMEC673_10235 PF00589 Phage integrase family AMEC673_10240 PF01066 CDP-alcohol phosphatidyltransferase AMEC673_10245 PF08459 UvrC Helix-hairpin-helix N-terminal AMEC673_10245 PF02151 UvrB/uvrC motif AMEC673_10245 PF01541 GIY-YIG catalytic domain AMEC673_10250 PF00196 Bacterial regulatory proteins, luxR family AMEC673_10250 PF00072 Response regulator receiver domain AMEC673_10255 PF02678 Pirin AMEC673_10255 PF17954 Quercetinase C-terminal cupin domain AMEC673_10265 PF12867 DinB superfamily AMEC673_10265 PF03781 Sulfatase-modifying factor enzyme 1 AMEC673_10275 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMEC673_10280 PF07681 DoxX AMEC673_10285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_10285 PF03466 LysR substrate binding domain AMEC673_10295 PF01027 Inhibitor of apoptosis-promoting Bax1 AMEC673_10300 PF02635 DsrE/DsrF-like family AMEC673_10315 PF04358 DsrC like protein AMEC673_10345 PF00593 TonB dependent receptor AMEC673_10345 PF07715 TonB-dependent Receptor Plug Domain AMEC673_10350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMEC673_10350 PF02403 Seryl-tRNA synthetase N-terminal domain AMEC673_10355 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMEC673_10360 PF12002 MgsA AAA+ ATPase C terminal AMEC673_10360 PF16193 AAA C-terminal domain AMEC673_10360 PF00004 ATPase family associated with various cellular activities (AAA) AMEC673_10365 PF03548 Outer membrane lipoprotein carrier protein LolA AMEC673_10370 PF17854 FtsK alpha domain AMEC673_10370 PF09397 Ftsk gamma domain AMEC673_10370 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMEC673_10370 PF01580 FtsK/SpoIIIE family AMEC673_10375 PF01037 Lrp/AsnC ligand binding domain AMEC673_10380 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMEC673_10380 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMEC673_10385 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMEC673_10390 PF18073 Rubredoxin metal binding domain AMEC673_10405 PF00216 Bacterial DNA-binding protein AMEC673_10410 PF00575 S1 RNA binding domain AMEC673_10415 PF02224 Cytidylate kinase AMEC673_10420 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMEC673_10425 PF00266 Aminotransferase class-V AMEC673_10430 PF00521 DNA gyrase/topoisomerase IV, subunit A AMEC673_10430 PF03989 DNA gyrase C-terminal domain, beta-propeller AMEC673_10435 PF03989 DNA gyrase C-terminal domain, beta-propeller AMEC673_10435 PF00521 DNA gyrase/topoisomerase IV, subunit A AMEC673_10445 PF03477 ATP cone domain AMEC673_10445 PF02867 Ribonucleotide reductase, barrel domain AMEC673_10445 PF00317 Ribonucleotide reductase, all-alpha domain AMEC673_10450 PF00268 Ribonucleotide reductase, small chain AMEC673_10455 PF00111 2Fe-2S iron-sulfur cluster binding domain AMEC673_10460 PF00106 short chain dehydrogenase AMEC673_10475 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMEC673_10475 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMEC673_10480 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_10480 PF03707 Bacterial signalling protein N terminal repeat AMEC673_10480 PF00563 EAL domain AMEC673_10485 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_10485 PF00072 Response regulator receiver domain AMEC673_10490 PF00892 EamA-like transporter family AMEC673_10495 PF01259 SAICAR synthetase AMEC673_10500 PF06804 NlpB/DapX lipoprotein AMEC673_10505 PF00701 Dihydrodipicolinate synthetase family AMEC673_10515 PF00578 AhpC/TSA family AMEC673_10520 PF01594 AI-2E family transporter AMEC673_10525 PF01435 Peptidase family M48 AMEC673_10530 PF00578 AhpC/TSA family AMEC673_10535 PF03960 ArsC family AMEC673_10540 PF03358 NADPH-dependent FMN reductase AMEC673_10555 PF00308 Bacterial dnaA protein AMEC673_10565 PF00586 AIR synthase related protein, N-terminal domain AMEC673_10565 PF02769 AIR synthase related protein, C-terminal domain AMEC673_10570 PF00551 Formyl transferase AMEC673_10580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMEC673_10580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMEC673_10580 PF02770 Acyl-CoA dehydrogenase, middle domain AMEC673_10580 PF09317 Domain of unknown function (DUF1974) AMEC673_10590 PF00196 Bacterial regulatory proteins, luxR family AMEC673_10590 PF00072 Response regulator receiver domain AMEC673_10595 PF13649 Methyltransferase domain AMEC673_10600 PF08003 Protein of unknown function (DUF1698) AMEC673_10605 PF00485 Phosphoribulokinase / Uridine kinase family AMEC673_10620 PF00128 Alpha amylase, catalytic domain AMEC673_10625 PF13419 Haloacid dehalogenase-like hydrolase AMEC673_10640 PF01554 MatE AMEC673_10660 PF00291 Pyridoxal-phosphate dependent enzyme AMEC673_10730 PF04134 Protein of unknown function, DUF393 AMEC673_10740 PF10431 C-terminal, D2-small domain, of ClpB protein AMEC673_10740 PF07724 AAA domain (Cdc48 subfamily) AMEC673_10740 PF06689 ClpX C4-type zinc finger AMEC673_10775 PF02567 Phenazine biosynthesis-like protein AMEC673_10785 PF00378 Enoyl-CoA hydratase/isomerase AMEC673_10800 PF00255 Glutathione peroxidase AMEC673_10805 PF02525 Flavodoxin-like fold AMEC673_10815 PF01053 Cys/Met metabolism PLP-dependent enzyme AMEC673_10830 PF00155 Aminotransferase class I and II AMEC673_10835 PF10459 Peptidase S46 AMEC673_10845 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AMEC673_10860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMEC673_10860 PF02770 Acyl-CoA dehydrogenase, middle domain AMEC673_10860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMEC673_10860 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMEC673_10865 PF07883 Cupin domain AMEC673_10865 PF12833 Helix-turn-helix domain AMEC673_10870 PF07715 TonB-dependent Receptor Plug Domain AMEC673_10870 PF00593 TonB dependent receptor AMEC673_10880 PF00326 Prolyl oligopeptidase family AMEC673_10880 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMEC673_10885 PF00873 AcrB/AcrD/AcrF family AMEC673_10890 PF13533 Biotin-lipoyl like AMEC673_10900 PF01012 Electron transfer flavoprotein domain AMEC673_10900 PF00766 Electron transfer flavoprotein FAD-binding domain AMEC673_10905 PF01012 Electron transfer flavoprotein domain AMEC673_10915 PF00816 H-NS histone family AMEC673_10920 PF00561 alpha/beta hydrolase fold AMEC673_10930 PF00258 Flavodoxin AMEC673_10935 PF13276 HTH-like domain AMEC673_10935 PF00665 Integrase core domain AMEC673_10935 PF13333 Integrase core domain AMEC673_10945 PF00672 HAMP domain AMEC673_10945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_10950 PF01475 Ferric uptake regulator family AMEC673_10955 PF01063 Amino-transferase class IV AMEC673_10960 PF02626 Carboxyltransferase domain, subdomain A and B AMEC673_10965 PF02682 Carboxyltransferase domain, subdomain C and D AMEC673_10970 PF03746 LamB/YcsF family AMEC673_10975 PF13509 S1 domain AMEC673_10975 PF17783 CvfB-like winged helix domain AMEC673_10980 PF02566 OsmC-like protein AMEC673_10985 PF13533 Biotin-lipoyl like AMEC673_10990 PF00873 AcrB/AcrD/AcrF family AMEC673_10995 PF00873 AcrB/AcrD/AcrF family AMEC673_11010 PF00155 Aminotransferase class I and II AMEC673_11020 PF01966 HD domain AMEC673_11020 PF13286 Phosphohydrolase-associated domain AMEC673_11025 PF00174 Oxidoreductase molybdopterin binding domain AMEC673_11030 PF01794 Ferric reductase like transmembrane component AMEC673_11045 PF02810 SEC-C motif AMEC673_11050 PF00128 Alpha amylase, catalytic domain AMEC673_11055 PF00107 Zinc-binding dehydrogenase AMEC673_11055 PF08240 Alcohol dehydrogenase GroES-like domain AMEC673_11065 PF02770 Acyl-CoA dehydrogenase, middle domain AMEC673_11065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMEC673_11065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMEC673_11075 PF07715 TonB-dependent Receptor Plug Domain AMEC673_11075 PF00593 TonB dependent receptor AMEC673_11095 PF06969 HemN C-terminal domain AMEC673_11095 PF04055 Radical SAM superfamily AMEC673_11100 PF00005 ABC transporter AMEC673_11100 PF03459 TOBE domain AMEC673_11105 PF00528 Binding-protein-dependent transport system inner membrane component AMEC673_11115 PF02391 MoaE protein AMEC673_11120 PF02597 ThiS family AMEC673_11125 PF01967 MoaC family AMEC673_11130 PF00994 Probable molybdopterin binding domain AMEC673_11135 PF00899 ThiF family AMEC673_11145 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMEC673_11150 PF00155 Aminotransferase class I and II AMEC673_11160 PF01037 Lrp/AsnC ligand binding domain AMEC673_11185 PF00037 4Fe-4S binding domain AMEC673_11195 PF03435 Saccharopine dehydrogenase NADP binding domain AMEC673_11200 PF00155 Aminotransferase class I and II AMEC673_11215 PF01717 Cobalamin-independent synthase, Catalytic domain AMEC673_11215 PF08267 Cobalamin-independent synthase, N-terminal domain AMEC673_11220 PF00593 TonB dependent receptor AMEC673_11220 PF07715 TonB-dependent Receptor Plug Domain AMEC673_11230 PF08241 Methyltransferase domain AMEC673_11235 PF00355 Rieske [2Fe-2S] domain AMEC673_11240 PF00892 EamA-like transporter family AMEC673_11250 PF02245 Methylpurine-DNA glycosylase (MPG) AMEC673_11270 PF01810 LysE type translocator AMEC673_11290 PF13538 UvrD-like helicase C-terminal domain AMEC673_11295 PF00580 UvrD/REP helicase N-terminal domain AMEC673_11295 PF13361 UvrD-like helicase C-terminal domain AMEC673_11295 PF12705 PD-(D/E)XK nuclease superfamily AMEC673_11300 PF17946 RecC C-terminal domain AMEC673_11310 PF00501 AMP-binding enzyme AMEC673_11320 PF00563 EAL domain AMEC673_11320 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_11320 PF03707 Bacterial signalling protein N terminal repeat AMEC673_11325 PF17770 Ribonuclease J C-terminal domain AMEC673_11325 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMEC673_11325 PF12706 Beta-lactamase superfamily domain AMEC673_11340 PF03466 LysR substrate binding domain AMEC673_11340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_11360 PF01022 Bacterial regulatory protein, arsR family AMEC673_11370 PF03466 LysR substrate binding domain AMEC673_11370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_11380 PF00158 Sigma-54 interaction domain AMEC673_11380 PF00072 Response regulator receiver domain AMEC673_11380 PF02954 Bacterial regulatory protein, Fis family AMEC673_11390 PF00360 Phytochrome region AMEC673_11390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_11390 PF08446 PAS fold AMEC673_11390 PF01590 GAF domain AMEC673_11390 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_11395 PF00072 Response regulator receiver domain AMEC673_11400 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_11400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_11400 PF09308 LuxQ, periplasmic AMEC673_11400 PF00072 Response regulator receiver domain AMEC673_11440 PF07043 Protein of unknown function (DUF1328) AMEC673_11460 PF07023 Protein of unknown function (DUF1315) AMEC673_11470 PF01235 Sodium:alanine symporter family AMEC673_11475 PF00246 Zinc carboxypeptidase AMEC673_11475 PF18027 Cytosolic carboxypeptidase N-terminal domain AMEC673_11480 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMEC673_11480 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMEC673_11490 PF01641 SelR domain AMEC673_11495 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMEC673_11495 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMEC673_11500 PF00128 Alpha amylase, catalytic domain AMEC673_11500 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMEC673_11505 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMEC673_11505 PF02806 Alpha amylase, C-terminal all-beta domain AMEC673_11505 PF00128 Alpha amylase, catalytic domain AMEC673_11510 PF02446 4-alpha-glucanotransferase AMEC673_11515 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMEC673_11515 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMEC673_11520 PF01263 Aldose 1-epimerase AMEC673_11525 PF01081 KDPG and KHG aldolase AMEC673_11530 PF02685 Glucokinase AMEC673_11535 PF00920 Dehydratase family AMEC673_11540 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMEC673_11545 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMEC673_11545 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMEC673_11550 PF01418 Helix-turn-helix domain, rpiR family AMEC673_11550 PF01380 SIS domain AMEC673_11555 PF02887 Pyruvate kinase, alpha/beta domain AMEC673_11555 PF00224 Pyruvate kinase, barrel domain AMEC673_11560 PF01048 Phosphorylase superfamily AMEC673_11580 PF04972 BON domain AMEC673_11605 PF09347 Domain of unknown function (DUF1989) AMEC673_11630 PF04962 KduI/IolB family AMEC673_11635 PF03480 Bacterial extracellular solute-binding protein, family 7 AMEC673_11640 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AMEC673_11645 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMEC673_11650 PF00356 Bacterial regulatory proteins, lacI family AMEC673_11655 PF08666 SAF domain AMEC673_11655 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AMEC673_11660 PF02614 Glucuronate isomerase AMEC673_11665 PF08125 Mannitol dehydrogenase C-terminal domain AMEC673_11665 PF01232 Mannitol dehydrogenase Rossmann domain AMEC673_11670 PF01081 KDPG and KHG aldolase AMEC673_11675 PF00294 pfkB family carbohydrate kinase AMEC673_11680 PF13472 GDSL-like Lipase/Acylhydrolase family AMEC673_11690 PF07470 Glycosyl Hydrolase Family 88 AMEC673_11695 PF00295 Glycosyl hydrolases family 28 AMEC673_11700 PF01095 Pectinesterase AMEC673_11705 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMEC673_11705 PF00672 HAMP domain AMEC673_11705 PF00072 Response regulator receiver domain AMEC673_11705 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_11705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_11705 PF01627 Hpt domain AMEC673_11720 PF04231 Endonuclease I AMEC673_11725 PF01433 Peptidase family M1 domain AMEC673_11725 PF11838 ERAP1-like C-terminal domain AMEC673_11730 PF00672 HAMP domain AMEC673_11730 PF02743 Cache domain AMEC673_11730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_11745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_11745 PF03466 LysR substrate binding domain AMEC673_11750 PF01965 DJ-1/PfpI family AMEC673_11755 PF00465 Iron-containing alcohol dehydrogenase AMEC673_11760 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMEC673_11765 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_11765 PF01590 GAF domain AMEC673_11765 PF00563 EAL domain AMEC673_11765 PF00360 Phytochrome region AMEC673_11775 PF06628 Catalase-related immune-responsive AMEC673_11775 PF00199 Catalase AMEC673_11780 PF11849 Domain of unknown function (DUF3369) AMEC673_11785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_11785 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMEC673_11785 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_11790 PF12697 Alpha/beta hydrolase family AMEC673_11815 PF12833 Helix-turn-helix domain AMEC673_11820 PF00939 Sodium:sulfate symporter transmembrane region AMEC673_11825 PF00692 dUTPase AMEC673_11830 PF10609 NUBPL iron-transfer P-loop NTPase AMEC673_11835 PF09334 tRNA synthetases class I (M) AMEC673_11835 PF01588 Putative tRNA binding domain AMEC673_11835 PF08264 Anticodon-binding domain of tRNA AMEC673_11840 PF05552 Conserved TM helix AMEC673_11840 PF00924 Mechanosensitive ion channel AMEC673_11845 PF08241 Methyltransferase domain AMEC673_11850 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMEC673_11850 PF00753 Metallo-beta-lactamase superfamily AMEC673_11855 PF01476 LysM domain AMEC673_11855 PF01464 Transglycosylase SLT domain AMEC673_11865 PF09190 DALR domain AMEC673_11865 PF01406 tRNA synthetases class I (C) catalytic domain AMEC673_11870 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMEC673_11875 PF00149 Calcineurin-like phosphoesterase AMEC673_11885 PF01145 SPFH domain / Band 7 family AMEC673_11885 PF15975 Flotillin AMEC673_11890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_11890 PF03466 LysR substrate binding domain AMEC673_11905 PF00128 Alpha amylase, catalytic domain AMEC673_11910 PF01638 HxlR-like helix-turn-helix AMEC673_11915 PF08240 Alcohol dehydrogenase GroES-like domain AMEC673_11915 PF00107 Zinc-binding dehydrogenase AMEC673_11920 PF03741 Integral membrane protein TerC family AMEC673_11925 PF00107 Zinc-binding dehydrogenase AMEC673_11925 PF08240 Alcohol dehydrogenase GroES-like domain AMEC673_11930 PF03466 LysR substrate binding domain AMEC673_11930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_11955 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AMEC673_11965 PF00156 Phosphoribosyl transferase domain AMEC673_11970 PF02674 Colicin V production protein AMEC673_11975 PF05036 Sporulation related domain AMEC673_11980 PF02875 Mur ligase family, glutamate ligase domain AMEC673_11980 PF08245 Mur ligase middle domain AMEC673_11985 PF01039 Carboxyl transferase domain AMEC673_11985 PF17848 Acetyl-coA carboxylase zinc finger domain AMEC673_11990 PF01416 tRNA pseudouridine synthase AMEC673_12000 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMEC673_12000 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMEC673_12005 PF11890 Domain of unknown function (DUF3410) AMEC673_12005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMEC673_12005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMEC673_12010 PF00596 Class II Aldolase and Adducin N-terminal domain AMEC673_12025 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AMEC673_12030 PF02801 Beta-ketoacyl synthase, C-terminal domain AMEC673_12030 PF00109 Beta-ketoacyl synthase, N-terminal domain AMEC673_12035 PF00501 AMP-binding enzyme AMEC673_12035 PF13193 AMP-binding enzyme C-terminal domain AMEC673_12045 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AMEC673_12045 PF01266 FAD dependent oxidoreductase AMEC673_12085 PF13411 MerR HTH family regulatory protein AMEC673_12100 PF00005 ABC transporter AMEC673_12110 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMEC673_12110 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMEC673_12115 PF02311 AraC-like ligand binding domain AMEC673_12115 PF12833 Helix-turn-helix domain AMEC673_12120 PF00857 Isochorismatase family AMEC673_12130 PF02667 Short chain fatty acid transporter AMEC673_12135 PF00672 HAMP domain AMEC673_12135 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMEC673_12135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_12135 PF00072 Response regulator receiver domain AMEC673_12135 PF01627 Hpt domain AMEC673_12135 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_12140 PF00675 Insulinase (Peptidase family M16) AMEC673_12140 PF05193 Peptidase M16 inactive domain AMEC673_12155 PF04315 Elongation factor P hydroxylase AMEC673_12180 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMEC673_12180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMEC673_12185 PF00378 Enoyl-CoA hydratase/isomerase AMEC673_12190 PF02909 Tetracyclin repressor-like, C-terminal domain AMEC673_12190 PF00440 Bacterial regulatory proteins, tetR family AMEC673_12195 PF05199 GMC oxidoreductase AMEC673_12195 PF00732 GMC oxidoreductase AMEC673_12205 PF06974 Protein of unknown function (DUF1298) AMEC673_12205 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMEC673_12210 PF08361 MAATS-type transcriptional repressor, C-terminal region AMEC673_12210 PF00440 Bacterial regulatory proteins, tetR family AMEC673_12215 PF04286 Protein of unknown function (DUF445) AMEC673_12245 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMEC673_12245 PF00326 Prolyl oligopeptidase family AMEC673_12250 PF07840 FadR C-terminal domain AMEC673_12250 PF00392 Bacterial regulatory proteins, gntR family AMEC673_12255 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AMEC673_12260 PF02600 Disulfide bond formation protein DsbB AMEC673_12265 PF13302 Acetyltransferase (GNAT) domain AMEC673_12270 PF03692 Putative zinc- or iron-chelating domain AMEC673_12275 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMEC673_12285 PF05166 YcgL domain AMEC673_12290 PF01612 3'-5' exonuclease AMEC673_12290 PF00570 HRDC domain AMEC673_12295 PF00501 AMP-binding enzyme AMEC673_12295 PF13193 AMP-binding enzyme C-terminal domain AMEC673_12300 PF12697 Alpha/beta hydrolase family AMEC673_12315 PF00814 Glycoprotease family AMEC673_12320 PF13307 Helicase C-terminal domain AMEC673_12320 PF06733 DEAD_2 AMEC673_12365 PF00128 Alpha amylase, catalytic domain AMEC673_12400 PF13614 AAA domain AMEC673_12410 PF08029 HisG, C-terminal domain AMEC673_12410 PF01634 ATP phosphoribosyltransferase AMEC673_12415 PF00815 Histidinol dehydrogenase AMEC673_12420 PF00155 Aminotransferase class I and II AMEC673_12425 PF00475 Imidazoleglycerol-phosphate dehydratase AMEC673_12430 PF00117 Glutamine amidotransferase class-I AMEC673_12435 PF00977 Histidine biosynthesis protein AMEC673_12440 PF00977 Histidine biosynthesis protein AMEC673_12445 PF01502 Phosphoribosyl-AMP cyclohydrolase AMEC673_12445 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMEC673_12455 PF01226 Formate/nitrite transporter AMEC673_12460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_12460 PF00672 HAMP domain AMEC673_12465 PF00675 Insulinase (Peptidase family M16) AMEC673_12465 PF05193 Peptidase M16 inactive domain AMEC673_12470 PF10502 Signal peptidase, peptidase S26 AMEC673_12475 PF07715 TonB-dependent Receptor Plug Domain AMEC673_12475 PF00593 TonB dependent receptor AMEC673_12485 PF05191 Adenylate kinase, active site lid AMEC673_12490 PF01609 Transposase DDE domain AMEC673_12490 PF13006 Insertion element 4 transposase N-terminal AMEC673_12525 PF00970 Oxidoreductase FAD-binding domain AMEC673_12525 PF00175 Oxidoreductase NAD-binding domain AMEC673_12530 PF02575 YbaB/EbfC DNA-binding family AMEC673_12535 PF12170 DNA polymerase III tau subunit V interacting with alpha AMEC673_12535 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMEC673_12535 PF12169 DNA polymerase III subunits gamma and tau domain III AMEC673_12540 PF00156 Phosphoribosyl transferase domain AMEC673_12550 PF05114 Protein of unknown function (DUF692) AMEC673_12560 PF00486 Transcriptional regulatory protein, C terminal AMEC673_12570 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_12570 PF01590 GAF domain AMEC673_12570 PF00563 EAL domain AMEC673_12570 PF00360 Phytochrome region AMEC673_12580 PF01066 CDP-alcohol phosphatidyltransferase AMEC673_12600 PF09330 D-lactate dehydrogenase, membrane binding AMEC673_12600 PF01565 FAD binding domain AMEC673_12605 PF02652 L-lactate permease AMEC673_12610 PF03466 LysR substrate binding domain AMEC673_12610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_12625 PF07724 AAA domain (Cdc48 subfamily) AMEC673_12625 PF17871 AAA lid domain AMEC673_12625 PF02861 Clp amino terminal domain, pathogenicity island component AMEC673_12625 PF00004 ATPase family associated with various cellular activities (AAA) AMEC673_12625 PF10431 C-terminal, D2-small domain, of ClpB protein AMEC673_12640 PF01479 S4 domain AMEC673_12640 PF00849 RNA pseudouridylate synthase AMEC673_12645 PF13525 Outer membrane lipoprotein AMEC673_12655 PF04545 Sigma-70, region 4 AMEC673_12655 PF04542 Sigma-70 region 2 AMEC673_12670 PF00106 short chain dehydrogenase AMEC673_12690 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMEC673_12690 PF00691 OmpA family AMEC673_12695 PF01618 MotA/TolQ/ExbB proton channel family AMEC673_12700 PF02609 Exonuclease VII small subunit AMEC673_12705 PF00348 Polyprenyl synthetase AMEC673_12710 PF02780 Transketolase, C-terminal domain AMEC673_12710 PF02779 Transketolase, pyrimidine binding domain AMEC673_12710 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMEC673_12715 PF04608 Phosphatidylglycerophosphatase A AMEC673_12720 PF00586 AIR synthase related protein, N-terminal domain AMEC673_12720 PF02769 AIR synthase related protein, C-terminal domain AMEC673_12725 PF01029 NusB family AMEC673_12730 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMEC673_12735 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMEC673_12735 PF00925 GTP cyclohydrolase II AMEC673_12740 PF00677 Lumazine binding domain AMEC673_12745 PF01872 RibD C-terminal domain AMEC673_12745 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMEC673_12750 PF03477 ATP cone domain AMEC673_12755 PF00464 Serine hydroxymethyltransferase AMEC673_12765 PF00005 ABC transporter AMEC673_12765 PF12848 ABC transporter AMEC673_12775 PF18073 Rubredoxin metal binding domain AMEC673_12785 PF18429 Domain of unknown function (DUF5609) AMEC673_12795 PF01026 TatD related DNase AMEC673_12800 PF01243 Pyridoxamine 5'-phosphate oxidase AMEC673_12800 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMEC673_12805 PF01926 50S ribosome-binding GTPase AMEC673_12805 PF07650 KH domain AMEC673_12810 PF00035 Double-stranded RNA binding motif AMEC673_12810 PF14622 Ribonuclease-III-like AMEC673_12815 PF10502 Signal peptidase, peptidase S26 AMEC673_12820 PF03144 Elongation factor Tu domain 2 AMEC673_12820 PF00679 Elongation factor G C-terminus AMEC673_12820 PF06421 GTP-binding protein LepA C-terminus AMEC673_12820 PF00009 Elongation factor Tu GTP binding domain AMEC673_12830 PF17188 MucB/RseB C-terminal domain AMEC673_12830 PF03888 MucB/RseB N-terminal domain AMEC673_12840 PF04542 Sigma-70 region 2 AMEC673_12840 PF08281 Sigma-70, region 4 AMEC673_12845 PF02910 Fumarate reductase flavoprotein C-term AMEC673_12845 PF00890 FAD binding domain AMEC673_12860 PF03937 Flavinator of succinate dehydrogenase AMEC673_12870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMEC673_12875 PF00543 Nitrogen regulatory protein P-II AMEC673_12880 PF02540 NAD synthase AMEC673_12915 PF07963 Prokaryotic N-terminal methylation motif AMEC673_12915 PF00114 Pilin (bacterial filament) AMEC673_12940 PF02401 LytB protein AMEC673_12945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMEC673_12950 PF01252 Signal peptidase (SPase) II AMEC673_12955 PF06827 Zinc finger found in FPG and IleRS AMEC673_12955 PF00133 tRNA synthetases class I (I, L, M and V) AMEC673_12955 PF08264 Anticodon-binding domain of tRNA AMEC673_12960 PF06574 FAD synthetase AMEC673_12960 PF01687 Riboflavin kinase AMEC673_12965 PF03023 Lipid II flippase MurJ AMEC673_12970 PF01649 Ribosomal protein S20 AMEC673_12975 PF00106 short chain dehydrogenase AMEC673_12985 PF00106 short chain dehydrogenase AMEC673_12990 PF01758 Sodium Bile acid symporter family AMEC673_12995 PF03466 LysR substrate binding domain AMEC673_12995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_13010 PF01546 Peptidase family M20/M25/M40 AMEC673_13010 PF07687 Peptidase dimerisation domain AMEC673_13020 PF13145 PPIC-type PPIASE domain AMEC673_13025 PF00216 Bacterial DNA-binding protein AMEC673_13030 PF00004 ATPase family associated with various cellular activities (AAA) AMEC673_13030 PF05362 Lon protease (S16) C-terminal proteolytic domain AMEC673_13030 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMEC673_13035 PF07724 AAA domain (Cdc48 subfamily) AMEC673_13035 PF06689 ClpX C4-type zinc finger AMEC673_13035 PF10431 C-terminal, D2-small domain, of ClpB protein AMEC673_13040 PF00574 Clp protease AMEC673_13045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMEC673_13045 PF05697 Bacterial trigger factor protein (TF) AMEC673_13045 PF05698 Bacterial trigger factor protein (TF) C-terminus AMEC673_13050 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMEC673_13050 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMEC673_13060 PF18389 TrmO C-terminal domain AMEC673_13060 PF01980 tRNA-methyltransferase O AMEC673_13065 PF03129 Anticodon binding domain AMEC673_13065 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMEC673_13070 PF12706 Beta-lactamase superfamily domain AMEC673_13070 PF00753 Metallo-beta-lactamase superfamily AMEC673_13075 PF02253 Phospholipase A1 AMEC673_13080 PF00850 Histone deacetylase domain AMEC673_13085 PF00672 HAMP domain AMEC673_13085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_13085 PF02743 Cache domain AMEC673_13090 PF00117 Glutamine amidotransferase class-I AMEC673_13090 PF00958 GMP synthase C terminal domain AMEC673_13090 PF02540 NAD synthase AMEC673_13095 PF00478 IMP dehydrogenase / GMP reductase domain AMEC673_13095 PF00571 CBS domain AMEC673_13100 PF02601 Exonuclease VII, large subunit AMEC673_13100 PF13742 OB-fold nucleic acid binding domain AMEC673_13115 PF01926 50S ribosome-binding GTPase AMEC673_13115 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMEC673_13120 PF13360 PQQ-like domain AMEC673_13125 PF09976 Tetratricopeptide repeat-like domain AMEC673_13130 PF13393 Histidyl-tRNA synthetase AMEC673_13130 PF03129 Anticodon binding domain AMEC673_13135 PF04551 GcpE protein AMEC673_13140 PF13464 Domain of unknown function (DUF4115) AMEC673_13150 PF04055 Radical SAM superfamily AMEC673_13155 PF00334 Nucleoside diphosphate kinase AMEC673_13160 PF02657 Fe-S metabolism associated domain AMEC673_13165 PF01883 Iron-sulfur cluster assembly protein AMEC673_13170 PF01521 Iron-sulphur cluster biosynthesis AMEC673_13175 PF00266 Aminotransferase class-V AMEC673_13180 PF01458 Uncharacterized protein family (UPF0051) AMEC673_13185 PF00005 ABC transporter AMEC673_13190 PF01458 Uncharacterized protein family (UPF0051) AMEC673_13195 PF00266 Aminotransferase class-V AMEC673_13200 PF02082 Transcriptional regulator AMEC673_13210 PF00743 Flavin-binding monooxygenase-like AMEC673_13215 PF06426 Serine acetyltransferase, N-terminal AMEC673_13215 PF00132 Bacterial transferase hexapeptide (six repeats) AMEC673_13220 PF00588 SpoU rRNA Methylase family AMEC673_13225 PF00459 Inositol monophosphatase family AMEC673_13235 PF00072 Response regulator receiver domain AMEC673_13235 PF04397 LytTr DNA-binding domain AMEC673_13245 PF13333 Integrase core domain AMEC673_13245 PF00665 Integrase core domain AMEC673_13245 PF13276 HTH-like domain AMEC673_13250 PF02355 Protein export membrane protein AMEC673_13250 PF07549 SecD/SecF GG Motif AMEC673_13255 PF07549 SecD/SecF GG Motif AMEC673_13255 PF13721 SecD export protein N-terminal TM region AMEC673_13255 PF02355 Protein export membrane protein AMEC673_13260 PF02699 Preprotein translocase subunit AMEC673_13265 PF01702 Queuine tRNA-ribosyltransferase AMEC673_13270 PF02547 Queuosine biosynthesis protein AMEC673_13285 PF04012 PspA/IM30 family AMEC673_13290 PF07885 Ion channel AMEC673_13305 PF06693 Protein of unknown function (DUF1190) AMEC673_13310 PF03738 Glutathionylspermidine synthase preATP-grasp AMEC673_13325 PF00005 ABC transporter AMEC673_13340 PF04960 Glutaminase AMEC673_13345 PF00245 Alkaline phosphatase AMEC673_13350 PF00072 Response regulator receiver domain AMEC673_13355 PF00463 Isocitrate lyase family AMEC673_13360 PF03466 LysR substrate binding domain AMEC673_13360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_13365 PF01274 Malate synthase AMEC673_13375 PF01370 NAD dependent epimerase/dehydratase family AMEC673_13405 PF13180 PDZ domain AMEC673_13405 PF17820 PDZ domain AMEC673_13435 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AMEC673_13435 PF00132 Bacterial transferase hexapeptide (six repeats) AMEC673_13435 PF14602 Hexapeptide repeat of succinyl-transferase AMEC673_13455 PF00534 Glycosyl transferases group 1 AMEC673_13455 PF13439 Glycosyltransferase Family 4 AMEC673_13470 PF00733 Asparagine synthase AMEC673_13470 PF13537 Glutamine amidotransferase domain AMEC673_13475 PF13439 Glycosyltransferase Family 4 AMEC673_13475 PF00534 Glycosyl transferases group 1 AMEC673_13495 PF17836 PglD N-terminal domain AMEC673_13495 PF00132 Bacterial transferase hexapeptide (six repeats) AMEC673_13500 PF01943 Polysaccharide biosynthesis protein AMEC673_13515 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMEC673_13520 PF00535 Glycosyl transferase family 2 AMEC673_13525 PF04230 Polysaccharide pyruvyl transferase AMEC673_13545 PF01522 Polysaccharide deacetylase AMEC673_13550 PF02397 Bacterial sugar transferase AMEC673_13565 PF13614 AAA domain AMEC673_13575 PF01471 Putative peptidoglycan binding domain AMEC673_13575 PF13401 AAA domain AMEC673_13580 PF01541 GIY-YIG catalytic domain AMEC673_13590 PF03710 Glutamate-ammonia ligase adenylyltransferase AMEC673_13590 PF08335 GlnD PII-uridylyltransferase AMEC673_13600 PF03279 Bacterial lipid A biosynthesis acyltransferase AMEC673_13615 PF09317 Domain of unknown function (DUF1974) AMEC673_13615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMEC673_13615 PF02770 Acyl-CoA dehydrogenase, middle domain AMEC673_13615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMEC673_13630 PF03707 Bacterial signalling protein N terminal repeat AMEC673_13630 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_13630 PF00563 EAL domain AMEC673_13635 PF00265 Thymidine kinase AMEC673_13645 PF04820 Tryptophan halogenase AMEC673_13650 PF00356 Bacterial regulatory proteins, lacI family AMEC673_13675 PF14508 Glycosyl-hydrolase 97 N-terminal AMEC673_13675 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMEC673_13675 PF10566 Glycoside hydrolase 97 AMEC673_13680 PF01926 50S ribosome-binding GTPase AMEC673_13685 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMEC673_13685 PF00588 SpoU rRNA Methylase family AMEC673_13730 PF00171 Aldehyde dehydrogenase family AMEC673_13735 PF05199 GMC oxidoreductase AMEC673_13735 PF00732 GMC oxidoreductase AMEC673_13750 PF05971 RNA methyltransferase AMEC673_13755 PF09278 MerR, DNA binding AMEC673_13755 PF00376 MerR family regulatory protein AMEC673_13785 PF02770 Acyl-CoA dehydrogenase, middle domain AMEC673_13785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMEC673_13785 PF18158 Adaptive response protein AidB N-terminal domain AMEC673_13815 PF03965 Penicillinase repressor AMEC673_13835 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMEC673_13845 PF00111 2Fe-2S iron-sulfur cluster binding domain AMEC673_13845 PF01799 [2Fe-2S] binding domain AMEC673_13850 PF00941 FAD binding domain in molybdopterin dehydrogenase AMEC673_13850 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMEC673_13855 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMEC673_13855 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMEC673_13860 PF01738 Dienelactone hydrolase family AMEC673_13900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMEC673_13905 PF00528 Binding-protein-dependent transport system inner membrane component AMEC673_13915 PF00005 ABC transporter AMEC673_13915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMEC673_13930 PF00106 short chain dehydrogenase AMEC673_13930 PF00561 alpha/beta hydrolase fold AMEC673_13935 PF01965 DJ-1/PfpI family AMEC673_13940 PF03631 Virulence factor BrkB AMEC673_13945 PF07690 Major Facilitator Superfamily AMEC673_13960 PF00072 Response regulator receiver domain AMEC673_13960 PF04397 LytTr DNA-binding domain AMEC673_14020 PF07152 YaeQ protein AMEC673_14050 PF07690 Major Facilitator Superfamily AMEC673_14055 PF01432 Peptidase family M3 AMEC673_14065 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMEC673_14070 PF00696 Amino acid kinase family AMEC673_14070 PF00583 Acetyltransferase (GNAT) family AMEC673_14075 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMEC673_14075 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMEC673_14075 PF06827 Zinc finger found in FPG and IleRS AMEC673_14095 PF09382 RQC domain AMEC673_14095 PF16124 RecQ zinc-binding AMEC673_14095 PF00271 Helicase conserved C-terminal domain AMEC673_14095 PF00270 DEAD/DEAH box helicase AMEC673_14095 PF00570 HRDC domain AMEC673_14110 PF00672 HAMP domain AMEC673_14110 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMEC673_14110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_14110 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_14110 PF01627 Hpt domain AMEC673_14110 PF00072 Response regulator receiver domain AMEC673_14120 PF00360 Phytochrome region AMEC673_14120 PF01590 GAF domain AMEC673_14120 PF08446 PAS fold AMEC673_14120 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_14120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_14125 PF07995 Glucose / Sorbosone dehydrogenase AMEC673_14160 PF01597 Glycine cleavage H-protein AMEC673_14165 PF01571 Aminomethyltransferase folate-binding domain AMEC673_14165 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMEC673_14170 PF07690 Major Facilitator Superfamily AMEC673_14175 PF01979 Amidohydrolase family AMEC673_14180 PF01380 SIS domain AMEC673_14185 PF01869 BadF/BadG/BcrA/BcrD ATPase family AMEC673_14190 PF03173 Putative carbohydrate binding domain AMEC673_14190 PF00728 Glycosyl hydrolase family 20, catalytic domain AMEC673_14190 PF02838 Glycosyl hydrolase family 20, domain 2 AMEC673_14200 PF00356 Bacterial regulatory proteins, lacI family AMEC673_14205 PF04820 Tryptophan halogenase AMEC673_14210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_14210 PF03466 LysR substrate binding domain AMEC673_14220 PF00557 Metallopeptidase family M24 AMEC673_14220 PF01321 Creatinase/Prolidase N-terminal domain AMEC673_14235 PF01494 FAD binding domain AMEC673_14240 PF01494 FAD binding domain AMEC673_14245 PF05195 Aminopeptidase P, N-terminal domain AMEC673_14245 PF00557 Metallopeptidase family M24 AMEC673_14250 PF03695 Uncharacterised protein family (UPF0149) AMEC673_14255 PF00294 pfkB family carbohydrate kinase AMEC673_14260 PF01156 Inosine-uridine preferring nucleoside hydrolase AMEC673_14265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_14265 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_14275 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMEC673_14280 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMEC673_14285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMEC673_14285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMEC673_14285 PF01842 ACT domain AMEC673_14305 PF06945 Protein of unknown function (DUF1289) AMEC673_14315 PF00873 AcrB/AcrD/AcrF family AMEC673_14320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMEC673_14325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_14325 PF03466 LysR substrate binding domain AMEC673_14330 PF13333 Integrase core domain AMEC673_14330 PF00665 Integrase core domain AMEC673_14330 PF13276 HTH-like domain AMEC673_14340 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMEC673_14340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMEC673_14345 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMEC673_14345 PF02817 e3 binding domain AMEC673_14345 PF00364 Biotin-requiring enzyme AMEC673_14350 PF17831 Pyruvate dehydrogenase E1 component middle domain AMEC673_14350 PF00456 Transketolase, thiamine diphosphate binding domain AMEC673_14355 PF00392 Bacterial regulatory proteins, gntR family AMEC673_14355 PF07729 FCD domain AMEC673_14365 PF01510 N-acetylmuramoyl-L-alanine amidase AMEC673_14375 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMEC673_14375 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMEC673_14380 PF07963 Prokaryotic N-terminal methylation motif AMEC673_14385 PF00482 Type II secretion system (T2SS), protein F AMEC673_14390 PF01478 Type IV leader peptidase family AMEC673_14390 PF06750 Bacterial Peptidase A24 N-terminal domain AMEC673_14395 PF01121 Dephospho-CoA kinase AMEC673_14400 PF07072 Cell division protein AMEC673_14410 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMEC673_14415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_14415 PF02743 Cache domain AMEC673_14415 PF00672 HAMP domain AMEC673_14420 PF00072 Response regulator receiver domain AMEC673_14420 PF00196 Bacterial regulatory proteins, luxR family AMEC673_14425 PF13614 AAA domain AMEC673_14435 PF07194 P2 response regulator binding domain AMEC673_14435 PF01627 Hpt domain AMEC673_14435 PF01584 CheW-like domain AMEC673_14435 PF02895 Signal transducing histidine kinase, homodimeric domain AMEC673_14435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_14440 PF00072 Response regulator receiver domain AMEC673_14445 PF01739 CheR methyltransferase, SAM binding domain AMEC673_14445 PF03705 CheR methyltransferase, all-alpha domain AMEC673_14455 PF01339 CheB methylesterase AMEC673_14455 PF00072 Response regulator receiver domain AMEC673_14460 PF01584 CheW-like domain AMEC673_14465 PF02743 Cache domain AMEC673_14465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_14465 PF00672 HAMP domain AMEC673_14470 PF00293 NUDIX domain AMEC673_14475 PF01043 SecA preprotein cross-linking domain AMEC673_14475 PF07517 SecA DEAD-like domain AMEC673_14475 PF02810 SEC-C motif AMEC673_14475 PF07516 SecA Wing and Scaffold domain AMEC673_14480 PF01551 Peptidase family M23 AMEC673_14480 PF01476 LysM domain AMEC673_14480 PF08525 Opacity-associated protein A N-terminal motif AMEC673_14485 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMEC673_14490 PF00091 Tubulin/FtsZ family, GTPase domain AMEC673_14490 PF12327 FtsZ family, C-terminal domain AMEC673_14495 PF02491 SHS2 domain inserted in FTSA AMEC673_14500 PF08478 POTRA domain, FtsQ-type AMEC673_14500 PF03799 Cell division protein FtsQ AMEC673_14505 PF01820 D-ala D-ala ligase N-terminus AMEC673_14505 PF07478 D-ala D-ala ligase C-terminus AMEC673_14510 PF01225 Mur ligase family, catalytic domain AMEC673_14510 PF08245 Mur ligase middle domain AMEC673_14510 PF02875 Mur ligase family, glutamate ligase domain AMEC673_14515 PF03033 Glycosyltransferase family 28 N-terminal domain AMEC673_14515 PF04101 Glycosyltransferase family 28 C-terminal domain AMEC673_14520 PF01098 Cell cycle protein AMEC673_14525 PF02875 Mur ligase family, glutamate ligase domain AMEC673_14525 PF08245 Mur ligase middle domain AMEC673_14530 PF00953 Glycosyl transferase family 4 AMEC673_14530 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMEC673_14535 PF01225 Mur ligase family, catalytic domain AMEC673_14535 PF02875 Mur ligase family, glutamate ligase domain AMEC673_14535 PF08245 Mur ligase middle domain AMEC673_14540 PF02875 Mur ligase family, glutamate ligase domain AMEC673_14540 PF08245 Mur ligase middle domain AMEC673_14540 PF01225 Mur ligase family, catalytic domain AMEC673_14545 PF00905 Penicillin binding protein transpeptidase domain AMEC673_14545 PF03717 Penicillin-binding Protein dimerisation domain AMEC673_14550 PF04999 Cell division protein FtsL AMEC673_14555 PF01795 MraW methylase family AMEC673_14560 PF02381 MraZ protein, putative antitoxin-like AMEC673_14580 PF00873 AcrB/AcrD/AcrF family AMEC673_14585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMEC673_14585 PF00529 HlyD membrane-fusion protein of T1SS AMEC673_14605 PF00462 Glutaredoxin AMEC673_14605 PF08534 Redoxin AMEC673_14610 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMEC673_14620 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_14620 PF17158 Membrane-associated sensor, integral membrane domain AMEC673_14630 PF02954 Bacterial regulatory protein, Fis family AMEC673_14630 PF00158 Sigma-54 interaction domain AMEC673_14630 PF00072 Response regulator receiver domain AMEC673_14635 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_14635 PF00072 Response regulator receiver domain AMEC673_14635 PF09456 RcsC Alpha-Beta-Loop (ABL) AMEC673_14635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_14640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMEC673_14640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMEC673_14655 PF00924 Mechanosensitive ion channel AMEC673_14655 PF05552 Conserved TM helix AMEC673_14660 PF04452 RNA methyltransferase AMEC673_14665 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMEC673_14665 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMEC673_14670 PF02622 Uncharacterized ACR, COG1678 AMEC673_14675 PF03652 Holliday junction resolvase AMEC673_14685 PF00437 Type II/IV secretion system protein AMEC673_14690 PF00437 Type II/IV secretion system protein AMEC673_14695 PF01168 Alanine racemase, N-terminal domain AMEC673_14700 PF03807 NADP oxidoreductase coenzyme F420-dependent AMEC673_14700 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMEC673_14705 PF02325 YGGT family AMEC673_14715 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMEC673_14715 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMEC673_14735 PF00080 Copper/zinc superoxide dismutase (SODC) AMEC673_14740 PF02566 OsmC-like protein AMEC673_14745 PF01625 Peptide methionine sulfoxide reductase AMEC673_14755 PF03591 AzlC protein AMEC673_14765 PF07690 Major Facilitator Superfamily AMEC673_14775 PF03883 Peroxide stress protein YaaA AMEC673_14785 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMEC673_14790 PF00342 Phosphoglucose isomerase AMEC673_14800 PF03167 Uracil DNA glycosylase superfamily AMEC673_14805 PF00291 Pyridoxal-phosphate dependent enzyme AMEC673_14805 PF14821 Threonine synthase N terminus AMEC673_14810 PF00288 GHMP kinases N terminal domain AMEC673_14810 PF08544 GHMP kinases C terminal AMEC673_14815 PF00742 Homoserine dehydrogenase AMEC673_14815 PF03447 Homoserine dehydrogenase, NAD binding domain AMEC673_14815 PF13840 ACT domain AMEC673_14815 PF00696 Amino acid kinase family AMEC673_14815 PF01842 ACT domain AMEC673_14820 PF17755 UvrA DNA-binding domain AMEC673_14825 PF03466 LysR substrate binding domain AMEC673_14825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_14830 PF00107 Zinc-binding dehydrogenase AMEC673_14830 PF08240 Alcohol dehydrogenase GroES-like domain AMEC673_14840 PF00072 Response regulator receiver domain AMEC673_14840 PF00196 Bacterial regulatory proteins, luxR family AMEC673_14845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_14845 PF07730 Histidine kinase AMEC673_14860 PF01022 Bacterial regulatory protein, arsR family AMEC673_14870 PF03358 NADPH-dependent FMN reductase AMEC673_14875 PF01758 Sodium Bile acid symporter family AMEC673_14880 PF01339 CheB methylesterase AMEC673_14880 PF00072 Response regulator receiver domain AMEC673_14885 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AMEC673_14890 PF00072 Response regulator receiver domain AMEC673_14890 PF00486 Transcriptional regulatory protein, C terminal AMEC673_14895 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_14895 PF00672 HAMP domain AMEC673_14895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_14915 PF00291 Pyridoxal-phosphate dependent enzyme AMEC673_14925 PF00962 Adenosine/AMP deaminase AMEC673_14930 PF04116 Fatty acid hydroxylase superfamily AMEC673_14950 PF03435 Saccharopine dehydrogenase NADP binding domain AMEC673_14950 PF16653 Saccharopine dehydrogenase C-terminal domain AMEC673_14955 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMEC673_14960 PF00535 Glycosyl transferase family 2 AMEC673_14970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMEC673_14975 PF04348 LppC putative lipoprotein AMEC673_14980 PF02021 Uncharacterised protein family UPF0102 AMEC673_14985 PF00534 Glycosyl transferases group 1 AMEC673_14990 PF13580 SIS domain AMEC673_14995 PF04972 BON domain AMEC673_15000 PF07690 Major Facilitator Superfamily AMEC673_15010 PF00893 Small Multidrug Resistance protein AMEC673_15015 PF07730 Histidine kinase AMEC673_15020 PF00196 Bacterial regulatory proteins, luxR family AMEC673_15020 PF00072 Response regulator receiver domain AMEC673_15035 PF07715 TonB-dependent Receptor Plug Domain AMEC673_15035 PF00593 TonB dependent receptor AMEC673_15050 PF00285 Citrate synthase, C-terminal domain AMEC673_15055 PF00330 Aconitase family (aconitate hydratase) AMEC673_15055 PF00694 Aconitase C-terminal domain AMEC673_15060 PF04303 PrpF protein AMEC673_15065 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_15070 PF00474 Sodium:solute symporter family AMEC673_15085 PF01627 Hpt domain AMEC673_15085 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_15085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_15085 PF00989 PAS fold AMEC673_15085 PF18415 Histidine kinase receptor ArcB trans-membrane domain AMEC673_15085 PF00072 Response regulator receiver domain AMEC673_15090 PF01510 N-acetylmuramoyl-L-alanine amidase AMEC673_15095 PF01645 Conserved region in glutamate synthase AMEC673_15095 PF00310 Glutamine amidotransferases class-II AMEC673_15095 PF01493 GXGXG motif AMEC673_15095 PF04898 Glutamate synthase central domain AMEC673_15100 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMEC673_15100 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMEC673_15120 PF01048 Phosphorylase superfamily AMEC673_15125 PF03186 CobD/Cbib protein AMEC673_15130 PF01497 Periplasmic binding protein AMEC673_15150 PF01266 FAD dependent oxidoreductase AMEC673_15155 PF07237 Protein of unknown function (DUF1428) AMEC673_15180 PF10145 Phage-related minor tail protein AMEC673_15180 PF01551 Peptidase family M23 AMEC673_15180 PF01464 Transglycosylase SLT domain AMEC673_15185 PF03702 Anhydro-N-acetylmuramic acid kinase AMEC673_15190 PF03600 Citrate transporter AMEC673_15195 PF07690 Major Facilitator Superfamily AMEC673_15205 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMEC673_15215 PF01053 Cys/Met metabolism PLP-dependent enzyme AMEC673_15220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMEC673_15225 PF00043 Glutathione S-transferase, C-terminal domain AMEC673_15225 PF13417 Glutathione S-transferase, N-terminal domain AMEC673_15230 PF01521 Iron-sulphur cluster biosynthesis AMEC673_15235 PF03976 Polyphosphate kinase 2 (PPK2) AMEC673_15240 PF03776 Septum formation topological specificity factor MinE AMEC673_15245 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMEC673_15250 PF05209 Septum formation inhibitor MinC, N-terminal domain AMEC673_15250 PF03775 Septum formation inhibitor MinC, C-terminal domain AMEC673_15255 PF00206 Lyase AMEC673_15255 PF10415 Fumarase C C-terminus AMEC673_15265 PF00127 Copper binding proteins, plastocyanin/azurin family AMEC673_15300 PF01566 Natural resistance-associated macrophage protein AMEC673_15305 PF00155 Aminotransferase class I and II AMEC673_15310 PF00072 Response regulator receiver domain AMEC673_15310 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_15310 PF08448 PAS fold AMEC673_15310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_15310 PF13188 PAS domain AMEC673_15320 PF03951 Glutamine synthetase, beta-Grasp domain AMEC673_15320 PF00120 Glutamine synthetase, catalytic domain AMEC673_15330 PF00989 PAS fold AMEC673_15330 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_15330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_15335 PF00158 Sigma-54 interaction domain AMEC673_15335 PF02954 Bacterial regulatory protein, Fis family AMEC673_15335 PF00072 Response regulator receiver domain AMEC673_15340 PF00072 Response regulator receiver domain AMEC673_15345 PF01553 Acyltransferase AMEC673_15350 PF06877 Regulator of ribonuclease activity B AMEC673_15360 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_15360 PF17158 Membrane-associated sensor, integral membrane domain AMEC673_15380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_15380 PF00672 HAMP domain AMEC673_15380 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMEC673_15380 PF00072 Response regulator receiver domain AMEC673_15380 PF01627 Hpt domain AMEC673_15380 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_15385 PF08264 Anticodon-binding domain of tRNA AMEC673_15385 PF10458 Valyl tRNA synthetase tRNA binding arm AMEC673_15385 PF00133 tRNA synthetases class I (I, L, M and V) AMEC673_15390 PF04364 DNA polymerase III chi subunit, HolC AMEC673_15395 PF00883 Cytosol aminopeptidase family, catalytic domain AMEC673_15395 PF02789 Cytosol aminopeptidase family, N-terminal domain AMEC673_15400 PF03739 Lipopolysaccharide export system permease LptF/LptG AMEC673_15405 PF03739 Lipopolysaccharide export system permease LptF/LptG AMEC673_15420 PF04542 Sigma-70 region 2 AMEC673_15420 PF04545 Sigma-70, region 4 AMEC673_15455 PF00005 ABC transporter AMEC673_15460 PF00005 ABC transporter AMEC673_15460 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMEC673_15465 PF02653 Branched-chain amino acid transport system / permease component AMEC673_15470 PF02653 Branched-chain amino acid transport system / permease component AMEC673_15485 PF01609 Transposase DDE domain AMEC673_15485 PF13006 Insertion element 4 transposase N-terminal AMEC673_15490 PF03594 Benzoate membrane transport protein AMEC673_15495 PF07690 Major Facilitator Superfamily AMEC673_15500 PF00106 short chain dehydrogenase AMEC673_15505 PF00970 Oxidoreductase FAD-binding domain AMEC673_15505 PF00111 2Fe-2S iron-sulfur cluster binding domain AMEC673_15505 PF00175 Oxidoreductase NAD-binding domain AMEC673_15510 PF00866 Ring hydroxylating beta subunit AMEC673_15515 PF00355 Rieske [2Fe-2S] domain AMEC673_15515 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMEC673_15520 PF00775 Dioxygenase AMEC673_15520 PF04444 Catechol dioxygenase N terminus AMEC673_15525 PF02426 Muconolactone delta-isomerase AMEC673_15530 PF13378 Enolase C-terminal domain-like AMEC673_15530 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMEC673_15535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_15535 PF03466 LysR substrate binding domain AMEC673_15540 PF01614 Bacterial transcriptional regulator AMEC673_15540 PF09339 IclR helix-turn-helix domain AMEC673_15545 PF01144 Coenzyme A transferase AMEC673_15550 PF01144 Coenzyme A transferase AMEC673_15555 PF02803 Thiolase, C-terminal domain AMEC673_15555 PF00108 Thiolase, N-terminal domain AMEC673_15560 PF12146 Serine aminopeptidase, S33 AMEC673_15570 PF07728 AAA domain (dynein-related subfamily) AMEC673_15570 PF12102 Domain of unknown function (DUF3578) AMEC673_15570 PF07728 AAA domain (dynein-related subfamily) AMEC673_15570 PF12102 Domain of unknown function (DUF3578) AMEC673_15595 PF13361 UvrD-like helicase C-terminal domain AMEC673_15595 PF00580 UvrD/REP helicase N-terminal domain AMEC673_15610 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMEC673_15610 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMEC673_15615 PF00072 Response regulator receiver domain AMEC673_15615 PF00486 Transcriptional regulatory protein, C terminal AMEC673_15620 PF01594 AI-2E family transporter AMEC673_15625 PF07715 TonB-dependent Receptor Plug Domain AMEC673_15625 PF00593 TonB dependent receptor AMEC673_15640 PF08240 Alcohol dehydrogenase GroES-like domain AMEC673_15640 PF00107 Zinc-binding dehydrogenase AMEC673_15645 PF13098 Thioredoxin-like domain AMEC673_15650 PF00578 AhpC/TSA family AMEC673_15655 PF00072 Response regulator receiver domain AMEC673_15655 PF00486 Transcriptional regulatory protein, C terminal AMEC673_15660 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_15660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_15660 PF08521 Two-component sensor kinase N-terminal AMEC673_15685 PF00230 Major intrinsic protein AMEC673_15690 PF00892 EamA-like transporter family AMEC673_15710 PF02659 Putative manganese efflux pump AMEC673_15720 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMEC673_15730 PF00557 Metallopeptidase family M24 AMEC673_15730 PF01321 Creatinase/Prolidase N-terminal domain AMEC673_15735 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMEC673_15735 PF05221 S-adenosyl-L-homocysteine hydrolase AMEC673_15740 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_15740 PF08448 PAS fold AMEC673_15745 PF03547 Membrane transport protein AMEC673_15750 PF12697 Alpha/beta hydrolase family AMEC673_15755 PF13360 PQQ-like domain AMEC673_15755 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMEC673_15760 PF13360 PQQ-like domain AMEC673_15760 PF01011 PQQ enzyme repeat AMEC673_15785 PF00005 ABC transporter AMEC673_15795 PF02789 Cytosol aminopeptidase family, N-terminal domain AMEC673_15795 PF00883 Cytosol aminopeptidase family, catalytic domain AMEC673_15800 PF12706 Beta-lactamase superfamily domain AMEC673_15805 PF03070 TENA/THI-4/PQQC family AMEC673_15810 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMEC673_15815 PF04055 Radical SAM superfamily AMEC673_15815 PF13186 Iron-sulfur cluster-binding domain AMEC673_15840 PF00196 Bacterial regulatory proteins, luxR family AMEC673_15840 PF00072 Response regulator receiver domain AMEC673_15845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_15845 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_15855 PF12801 4Fe-4S binding domain AMEC673_15855 PF04205 FMN-binding domain AMEC673_15860 PF00171 Aldehyde dehydrogenase family AMEC673_15865 PF00196 Bacterial regulatory proteins, luxR family AMEC673_15865 PF00072 Response regulator receiver domain AMEC673_15870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_15870 PF05231 MASE1 AMEC673_15870 PF07730 Histidine kinase AMEC673_15875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_15875 PF08447 PAS fold AMEC673_15875 PF13426 PAS domain AMEC673_15885 PF00171 Aldehyde dehydrogenase family AMEC673_15890 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMEC673_15890 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMEC673_15905 PF02028 BCCT, betaine/carnitine/choline family transporter AMEC673_15910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_15910 PF03466 LysR substrate binding domain AMEC673_15915 PF01070 FMN-dependent dehydrogenase AMEC673_15920 PF09330 D-lactate dehydrogenase, membrane binding AMEC673_15920 PF01565 FAD binding domain AMEC673_15925 PF00196 Bacterial regulatory proteins, luxR family AMEC673_15930 PF03783 Curli production assembly/transport component CsgG AMEC673_15955 PF00082 Subtilase family AMEC673_15960 PF00072 Response regulator receiver domain AMEC673_15960 PF00196 Bacterial regulatory proteins, luxR family AMEC673_15965 PF07730 Histidine kinase AMEC673_15965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_15975 PF00271 Helicase conserved C-terminal domain AMEC673_15975 PF00270 DEAD/DEAH box helicase AMEC673_15980 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMEC673_15980 PF12795 Mechanosensitive ion channel porin domain AMEC673_15980 PF00924 Mechanosensitive ion channel AMEC673_15990 PF00141 Peroxidase AMEC673_16000 PF00563 EAL domain AMEC673_16000 PF13426 PAS domain AMEC673_16000 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_16015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_16015 PF03466 LysR substrate binding domain AMEC673_16025 PF01925 Sulfite exporter TauE/SafE AMEC673_16035 PF08769 Sporulation initiation factor Spo0A C terminal AMEC673_16035 PF00072 Response regulator receiver domain AMEC673_16045 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_16045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_16055 PF00136 DNA polymerase family B AMEC673_16055 PF03104 DNA polymerase family B, exonuclease domain AMEC673_16065 PF13193 AMP-binding enzyme C-terminal domain AMEC673_16065 PF00501 AMP-binding enzyme AMEC673_16080 PF05958 tRNA (Uracil-5-)-methyltransferase AMEC673_16085 PF00440 Bacterial regulatory proteins, tetR family AMEC673_16095 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMEC673_16095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMEC673_16105 PF03167 Uracil DNA glycosylase superfamily AMEC673_16110 PF00563 EAL domain AMEC673_16110 PF03707 Bacterial signalling protein N terminal repeat AMEC673_16110 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_16120 PF01507 Phosphoadenosine phosphosulfate reductase family AMEC673_16125 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMEC673_16125 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMEC673_16130 PF00258 Flavodoxin AMEC673_16130 PF00175 Oxidoreductase NAD-binding domain AMEC673_16130 PF00667 FAD binding domain AMEC673_16150 PF04024 PspC domain AMEC673_16155 PF04012 PspA/IM30 family AMEC673_16165 PF01207 Dihydrouridine synthase (Dus) AMEC673_16175 PF00691 OmpA family AMEC673_16175 PF01389 OmpA-like transmembrane domain AMEC673_16180 PF05362 Lon protease (S16) C-terminal proteolytic domain AMEC673_16180 PF00004 ATPase family associated with various cellular activities (AAA) AMEC673_16180 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMEC673_16185 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_16185 PF03707 Bacterial signalling protein N terminal repeat AMEC673_16185 PF00563 EAL domain AMEC673_16190 PF00756 Putative esterase AMEC673_16195 PF01553 Acyltransferase AMEC673_16200 PF01553 Acyltransferase AMEC673_16205 PF00924 Mechanosensitive ion channel AMEC673_16220 PF01370 NAD dependent epimerase/dehydratase family AMEC673_16225 PF00209 Sodium:neurotransmitter symporter family AMEC673_16240 PF01625 Peptide methionine sulfoxide reductase AMEC673_16255 PF00258 Flavodoxin AMEC673_16265 PF02472 Biopolymer transport protein ExbD/TolR AMEC673_16275 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AMEC673_16275 PF13181 Tetratricopeptide repeat AMEC673_16280 PF01270 Glycosyl hydrolases family 8 AMEC673_16290 PF03170 Bacterial cellulose synthase subunit AMEC673_16290 PF03552 Cellulose synthase AMEC673_16290 PF00535 Glycosyl transferase family 2 AMEC673_16290 PF07238 PilZ domain AMEC673_16305 PF05175 Methyltransferase small domain AMEC673_16310 PF13460 NAD(P)H-binding AMEC673_16315 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMEC673_16315 PF00326 Prolyl oligopeptidase family AMEC673_16320 PF08000 Bacterial PH domain AMEC673_16325 PF08448 PAS fold AMEC673_16325 PF00563 EAL domain AMEC673_16325 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_16330 PF00291 Pyridoxal-phosphate dependent enzyme AMEC673_16335 PF07969 Amidohydrolase family AMEC673_16345 PF00753 Metallo-beta-lactamase superfamily AMEC673_16355 PF03466 LysR substrate binding domain AMEC673_16355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_16360 PF13230 Glutamine amidotransferases class-II AMEC673_16375 PF05360 yiaA/B two helix domain AMEC673_16395 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AMEC673_16400 PF07715 TonB-dependent Receptor Plug Domain AMEC673_16400 PF00593 TonB dependent receptor AMEC673_16405 PF00171 Aldehyde dehydrogenase family AMEC673_16410 PF01613 Flavin reductase like domain AMEC673_16415 PF00881 Nitroreductase family AMEC673_16420 PF00561 alpha/beta hydrolase fold AMEC673_16425 PF01042 Endoribonuclease L-PSP AMEC673_16430 PF00857 Isochorismatase family AMEC673_16435 PF00296 Luciferase-like monooxygenase AMEC673_16440 PF08362 YcdC-like protein, C-terminal region AMEC673_16440 PF00440 Bacterial regulatory proteins, tetR family AMEC673_16455 PF09905 DNA-binding protein VF530 AMEC673_16460 PF02447 GntP family permease AMEC673_16470 PF00356 Bacterial regulatory proteins, lacI family AMEC673_16475 PF00753 Metallo-beta-lactamase superfamily AMEC673_16475 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMEC673_16485 PF00817 impB/mucB/samB family AMEC673_16485 PF11799 impB/mucB/samB family C-terminal domain AMEC673_16485 PF11798 IMS family HHH motif AMEC673_16490 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AMEC673_16505 PF02424 ApbE family AMEC673_16510 PF00175 Oxidoreductase NAD-binding domain AMEC673_16510 PF00111 2Fe-2S iron-sulfur cluster binding domain AMEC673_16510 PF00970 Oxidoreductase FAD-binding domain AMEC673_16515 PF02508 Rnf-Nqr subunit, membrane protein AMEC673_16520 PF02508 Rnf-Nqr subunit, membrane protein AMEC673_16525 PF04205 FMN-binding domain AMEC673_16530 PF03116 NQR2, RnfD, RnfE family AMEC673_16535 PF11973 NQRA C-terminal domain AMEC673_16535 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AMEC673_16540 PF07055 Enoyl reductase FAD binding domain AMEC673_16540 PF12241 Trans-2-enoyl-CoA reductase catalytic region AMEC673_16540 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AMEC673_16545 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMEC673_16545 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMEC673_16550 PF00311 Phosphoenolpyruvate carboxylase AMEC673_16555 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMEC673_16555 PF00056 lactate/malate dehydrogenase, NAD binding domain AMEC673_16560 PF02863 Arginine repressor, C-terminal domain AMEC673_16560 PF01316 Arginine repressor, DNA binding domain AMEC673_16570 PF00593 TonB dependent receptor AMEC673_16585 PF00485 Phosphoribulokinase / Uridine kinase family AMEC673_16590 PF07662 Na+ dependent nucleoside transporter C-terminus AMEC673_16590 PF07670 Nucleoside recognition AMEC673_16590 PF01773 Na+ dependent nucleoside transporter N-terminus AMEC673_16605 PF02469 Fasciclin domain AMEC673_16615 PF00072 Response regulator receiver domain AMEC673_16615 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_16625 PF00571 CBS domain AMEC673_16630 PF00474 Sodium:solute symporter family AMEC673_16640 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_16640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_16640 PF18415 Histidine kinase receptor ArcB trans-membrane domain AMEC673_16650 PF18030 RimK PreATP-grasp domain AMEC673_16650 PF08443 RimK-like ATP-grasp domain AMEC673_16660 PF18030 RimK PreATP-grasp domain AMEC673_16660 PF08443 RimK-like ATP-grasp domain AMEC673_16670 PF00072 Response regulator receiver domain AMEC673_16670 PF00196 Bacterial regulatory proteins, luxR family AMEC673_16675 PF16177 Acetyl-coenzyme A synthetase N-terminus AMEC673_16675 PF00501 AMP-binding enzyme AMEC673_16675 PF13193 AMP-binding enzyme C-terminal domain AMEC673_16685 PF02690 Na+/Pi-cotransporter AMEC673_16690 PF00248 Aldo/keto reductase family AMEC673_16700 PF00082 Subtilase family AMEC673_16715 PF00069 Protein kinase domain AMEC673_16720 PF17200 Single Cache domain 2 AMEC673_16720 PF07730 Histidine kinase AMEC673_16725 PF00196 Bacterial regulatory proteins, luxR family AMEC673_16725 PF00072 Response regulator receiver domain AMEC673_16730 PF00082 Subtilase family AMEC673_16745 PF00199 Catalase AMEC673_16745 PF06628 Catalase-related immune-responsive AMEC673_16755 PF03144 Elongation factor Tu domain 2 AMEC673_16755 PF00009 Elongation factor Tu GTP binding domain AMEC673_16755 PF03143 Elongation factor Tu C-terminal domain AMEC673_16760 PF03309 Type III pantothenate kinase AMEC673_16765 PF02237 Biotin protein ligase C terminal domain AMEC673_16765 PF03099 Biotin/lipoate A/B protein ligase family AMEC673_16765 PF08279 HTH domain AMEC673_16770 PF01565 FAD binding domain AMEC673_16770 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMEC673_16775 PF08447 PAS fold AMEC673_16775 PF13426 PAS domain AMEC673_16775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_16805 PF00664 ABC transporter transmembrane region AMEC673_16805 PF00005 ABC transporter AMEC673_16805 PF03412 Peptidase C39 family AMEC673_16810 PF03466 LysR substrate binding domain AMEC673_16810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_16825 PF00483 Nucleotidyl transferase AMEC673_16825 PF01050 Mannose-6-phosphate isomerase AMEC673_16830 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMEC673_16830 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMEC673_16830 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMEC673_16835 PF00535 Glycosyl transferase family 2 AMEC673_16840 PF16363 GDP-mannose 4,6 dehydratase AMEC673_16845 PF04321 RmlD substrate binding domain AMEC673_16850 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMEC673_16855 PF00483 Nucleotidyl transferase AMEC673_16865 PF01527 Transposase AMEC673_16880 PF05045 Rhamnan synthesis protein F AMEC673_16880 PF14307 Glycosyltransferase WbsX AMEC673_16900 PF01196 Ribosomal protein L17 AMEC673_16905 PF01000 RNA polymerase Rpb3/RpoA insert domain AMEC673_16905 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMEC673_16905 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMEC673_16910 PF00163 Ribosomal protein S4/S9 N-terminal domain AMEC673_16910 PF01479 S4 domain AMEC673_16915 PF00411 Ribosomal protein S11 AMEC673_16920 PF00416 Ribosomal protein S13/S18 AMEC673_16925 PF00444 Ribosomal protein L36 AMEC673_16930 PF00344 SecY translocase AMEC673_16935 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMEC673_16940 PF00327 Ribosomal protein L30p/L7e AMEC673_16945 PF00333 Ribosomal protein S5, N-terminal domain AMEC673_16945 PF03719 Ribosomal protein S5, C-terminal domain AMEC673_16950 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMEC673_16955 PF00347 Ribosomal protein L6 AMEC673_16960 PF00410 Ribosomal protein S8 AMEC673_16965 PF00253 Ribosomal protein S14p/S29e AMEC673_16970 PF00673 ribosomal L5P family C-terminus AMEC673_16970 PF00281 Ribosomal protein L5 AMEC673_16975 PF00467 KOW motif AMEC673_16975 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMEC673_16980 PF00238 Ribosomal protein L14p/L23e AMEC673_16985 PF00072 Response regulator receiver domain AMEC673_16985 PF09308 LuxQ, periplasmic AMEC673_16985 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_16985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_17000 PF00588 SpoU rRNA Methylase family AMEC673_17000 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMEC673_17005 PF08206 Ribonuclease B OB domain AMEC673_17005 PF00773 RNB domain AMEC673_17005 PF17876 Cold shock domain AMEC673_17005 PF00575 S1 RNA binding domain AMEC673_17005 PF08461 Ribonuclease R winged-helix domain AMEC673_17010 PF16655 PhoD-like phosphatase, N-terminal domain AMEC673_17010 PF09423 PhoD-like phosphatase AMEC673_17025 PF07715 TonB-dependent Receptor Plug Domain AMEC673_17025 PF00593 TonB dependent receptor AMEC673_17040 PF08238 Sel1 repeat AMEC673_17050 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AMEC673_17055 PF00175 Oxidoreductase NAD-binding domain AMEC673_17065 PF04389 Peptidase family M28 AMEC673_17075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_17075 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_17075 PF00360 Phytochrome region AMEC673_17075 PF08446 PAS fold AMEC673_17075 PF01590 GAF domain AMEC673_17090 PF13808 DDE_Tnp_1-associated AMEC673_17090 PF01609 Transposase DDE domain AMEC673_17095 PF01609 Transposase DDE domain AMEC673_17095 PF13808 DDE_Tnp_1-associated AMEC673_17105 PF01654 Cytochrome bd terminal oxidase subunit I AMEC673_17110 PF02322 Cytochrome bd terminal oxidase subunit II AMEC673_17130 PF01037 Lrp/AsnC ligand binding domain AMEC673_17130 PF13404 AsnC-type helix-turn-helix domain AMEC673_17140 PF00313 'Cold-shock' DNA-binding domain AMEC673_17145 PF03109 ABC1 family AMEC673_17155 PF01209 ubiE/COQ5 methyltransferase family AMEC673_17165 PF01432 Peptidase family M3 AMEC673_17170 PF00072 Response regulator receiver domain AMEC673_17180 PF00072 Response regulator receiver domain AMEC673_17180 PF08448 PAS fold AMEC673_17180 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_17180 PF13188 PAS domain AMEC673_17180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_17185 PF00158 Sigma-54 interaction domain AMEC673_17185 PF02954 Bacterial regulatory protein, Fis family AMEC673_17185 PF00072 Response regulator receiver domain AMEC673_17190 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMEC673_17190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMEC673_17195 PF01568 Molydopterin dinucleotide binding domain AMEC673_17195 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMEC673_17195 PF00384 Molybdopterin oxidoreductase AMEC673_17200 PF07715 TonB-dependent Receptor Plug Domain AMEC673_17200 PF00593 TonB dependent receptor AMEC673_17210 PF00326 Prolyl oligopeptidase family AMEC673_17210 PF07676 WD40-like Beta Propeller Repeat AMEC673_17265 PF03412 Peptidase C39 family AMEC673_17265 PF00664 ABC transporter transmembrane region AMEC673_17265 PF00005 ABC transporter AMEC673_17270 PF00072 Response regulator receiver domain AMEC673_17270 PF00196 Bacterial regulatory proteins, luxR family AMEC673_17295 PF07724 AAA domain (Cdc48 subfamily) AMEC673_17295 PF00004 ATPase family associated with various cellular activities (AAA) AMEC673_17300 PF00227 Proteasome subunit AMEC673_17305 PF00313 'Cold-shock' DNA-binding domain AMEC673_17315 PF05036 Sporulation related domain AMEC673_17320 PF00270 DEAD/DEAH box helicase AMEC673_17320 PF00271 Helicase conserved C-terminal domain AMEC673_17320 PF17764 3′ DNA-binding domain (3′BD) AMEC673_17320 PF18074 Primosomal protein N C-terminal domain AMEC673_17320 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMEC673_17325 PF01197 Ribosomal protein L31 AMEC673_17340 PF03949 Malic enzyme, NAD binding domain AMEC673_17340 PF00390 Malic enzyme, N-terminal domain AMEC673_17345 PF01340 Met Apo-repressor, MetJ AMEC673_17350 PF02219 Methylenetetrahydrofolate reductase AMEC673_17355 PF03631 Virulence factor BrkB AMEC673_17370 PF00561 alpha/beta hydrolase fold AMEC673_17375 PF02580 D-Tyr-tRNA(Tyr) deacylase AMEC673_17380 PF09500 Putative thioesterase (yiiD_Cterm) AMEC673_17380 PF00583 Acetyltransferase (GNAT) family AMEC673_17385 PF04545 Sigma-70, region 4 AMEC673_17385 PF00140 Sigma-70 factor, region 1.2 AMEC673_17385 PF04542 Sigma-70 region 2 AMEC673_17400 PF08668 HDOD domain AMEC673_17400 PF00563 EAL domain AMEC673_17405 PF18075 FtsX extracellular domain AMEC673_17410 PF00005 ABC transporter AMEC673_17415 PF00448 SRP54-type protein, GTPase domain AMEC673_17415 PF02881 SRP54-type protein, helical bundle domain AMEC673_17430 PF01914 MarC family integral membrane protein AMEC673_17440 PF00883 Cytosol aminopeptidase family, catalytic domain AMEC673_17440 PF12404 Peptidase AMEC673_17445 PF17746 SfsA N-terminal OB domain AMEC673_17445 PF03749 Sugar fermentation stimulation protein RE domain AMEC673_17450 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMEC673_17455 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMEC673_17460 PF01743 Poly A polymerase head domain AMEC673_17460 PF12627 Probable RNA and SrmB- binding site of polymerase A AMEC673_17460 PF12626 Polymerase A arginine-rich C-terminus AMEC673_17465 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMEC673_17470 PF02548 Ketopantoate hydroxymethyltransferase AMEC673_17475 PF02569 Pantoate-beta-alanine ligase AMEC673_17480 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMEC673_17495 PF01061 ABC-2 type transporter AMEC673_17500 PF00005 ABC transporter AMEC673_17505 PF00486 Transcriptional regulatory protein, C terminal AMEC673_17505 PF00072 Response regulator receiver domain AMEC673_17510 PF00672 HAMP domain AMEC673_17510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_17510 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_17530 PF01595 Cyclin M transmembrane N-terminal domain AMEC673_17530 PF00571 CBS domain AMEC673_17535 PF03773 Predicted permease AMEC673_17540 PF02554 Carbon starvation protein CstA AMEC673_17540 PF13722 5TM C-terminal transporter carbon starvation CstA AMEC673_17545 PF00175 Oxidoreductase NAD-binding domain AMEC673_17545 PF00258 Flavodoxin AMEC673_17545 PF00667 FAD binding domain AMEC673_17590 PF02472 Biopolymer transport protein ExbD/TolR AMEC673_17600 PF01618 MotA/TolQ/ExbB proton channel family AMEC673_17610 PF00593 TonB dependent receptor AMEC673_17610 PF07715 TonB-dependent Receptor Plug Domain AMEC673_17615 PF01070 FMN-dependent dehydrogenase AMEC673_17620 PF13640 2OG-Fe(II) oxygenase superfamily AMEC673_17620 PF18331 PKHD-type hydroxylase C-terminal domain AMEC673_17625 PF00593 TonB dependent receptor AMEC673_17625 PF07715 TonB-dependent Receptor Plug Domain AMEC673_17630 PF07859 alpha/beta hydrolase fold AMEC673_17640 PF03143 Elongation factor Tu C-terminal domain AMEC673_17640 PF03144 Elongation factor Tu domain 2 AMEC673_17640 PF00009 Elongation factor Tu GTP binding domain AMEC673_17645 PF00009 Elongation factor Tu GTP binding domain AMEC673_17645 PF03764 Elongation factor G, domain IV AMEC673_17645 PF00679 Elongation factor G C-terminus AMEC673_17645 PF14492 Elongation Factor G, domain II AMEC673_17645 PF03144 Elongation factor Tu domain 2 AMEC673_17650 PF00177 Ribosomal protein S7p/S5e AMEC673_17655 PF00164 Ribosomal protein S12/S23 AMEC673_17660 PF04998 RNA polymerase Rpb1, domain 5 AMEC673_17660 PF05000 RNA polymerase Rpb1, domain 4 AMEC673_17660 PF04983 RNA polymerase Rpb1, domain 3 AMEC673_17660 PF00623 RNA polymerase Rpb1, domain 2 AMEC673_17660 PF04997 RNA polymerase Rpb1, domain 1 AMEC673_17665 PF04561 RNA polymerase Rpb2, domain 2 AMEC673_17665 PF04560 RNA polymerase Rpb2, domain 7 AMEC673_17665 PF04565 RNA polymerase Rpb2, domain 3 AMEC673_17665 PF00562 RNA polymerase Rpb2, domain 6 AMEC673_17665 PF04563 RNA polymerase beta subunit AMEC673_17665 PF10385 RNA polymerase beta subunit external 1 domain AMEC673_17675 PF00466 Ribosomal protein L10 AMEC673_17680 PF00687 Ribosomal protein L1p/L10e family AMEC673_17685 PF00298 Ribosomal protein L11, RNA binding domain AMEC673_17685 PF03946 Ribosomal protein L11, N-terminal domain AMEC673_17700 PF02357 Transcription termination factor nusG AMEC673_17700 PF00467 KOW motif AMEC673_17705 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMEC673_17710 PF00005 ABC transporter AMEC673_17710 PF00664 ABC transporter transmembrane region AMEC673_17715 PF03737 Aldolase/RraA AMEC673_17720 PF01431 Peptidase family M13 AMEC673_17720 PF05649 Peptidase family M13 AMEC673_17735 PF00271 Helicase conserved C-terminal domain AMEC673_17735 PF00270 DEAD/DEAH box helicase AMEC673_17735 PF03880 DbpA RNA binding domain AMEC673_17745 PF01979 Amidohydrolase family AMEC673_17750 PF08212 Lipocalin-like domain AMEC673_17755 PF00248 Aldo/keto reductase family AMEC673_17760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMEC673_17765 PF05552 Conserved TM helix AMEC673_17765 PF00924 Mechanosensitive ion channel AMEC673_17770 PF07690 Major Facilitator Superfamily AMEC673_17775 PF00128 Alpha amylase, catalytic domain AMEC673_17785 PF01227 GTP cyclohydrolase I AMEC673_17795 PF04371 Porphyromonas-type peptidyl-arginine deiminase AMEC673_17815 PF00271 Helicase conserved C-terminal domain AMEC673_17815 PF08494 DEAD/H associated AMEC673_17815 PF00270 DEAD/DEAH box helicase AMEC673_17820 PF04235 Protein of unknown function (DUF418) AMEC673_17835 PF04679 ATP dependent DNA ligase C terminal region AMEC673_17835 PF01068 ATP dependent DNA ligase domain AMEC673_17835 PF04675 DNA ligase N terminus AMEC673_17840 PF09285 Elongation factor P, C-terminal AMEC673_17840 PF08207 Elongation factor P (EF-P) KOW-like domain AMEC673_17840 PF01132 Elongation factor P (EF-P) OB domain AMEC673_17845 PF00294 pfkB family carbohydrate kinase AMEC673_17860 PF02798 Glutathione S-transferase, N-terminal domain AMEC673_17860 PF00043 Glutathione S-transferase, C-terminal domain AMEC673_17865 PF02798 Glutathione S-transferase, N-terminal domain AMEC673_17875 PF00561 alpha/beta hydrolase fold AMEC673_17880 PF08241 Methyltransferase domain AMEC673_17890 PF00171 Aldehyde dehydrogenase family AMEC673_17895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMEC673_17895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMEC673_17895 PF00205 Thiamine pyrophosphate enzyme, central domain AMEC673_17910 PF00762 Ferrochelatase AMEC673_17915 PF03806 AbgT putative transporter family AMEC673_17920 PF01145 SPFH domain / Band 7 family AMEC673_17925 PF12221 Bacterial membrane protein N terminal AMEC673_17925 PF01145 SPFH domain / Band 7 family AMEC673_17930 PF16360 GTP-binding GTPase Middle Region AMEC673_17930 PF13167 GTP-binding GTPase N-terminal AMEC673_17930 PF01926 50S ribosome-binding GTPase AMEC673_17935 PF17209 Hfq protein AMEC673_17945 PF08676 MutL C terminal dimerisation domain AMEC673_17945 PF01119 DNA mismatch repair protein, C-terminal domain AMEC673_17950 PF01520 N-acetylmuramoyl-L-alanine amidase AMEC673_17955 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMEC673_17960 PF01256 Carbohydrate kinase AMEC673_17960 PF03853 YjeF-related protein N-terminus AMEC673_17965 PF08331 Domain of unknown function (DUF1730) AMEC673_17975 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMEC673_17980 PF09297 NADH pyrophosphatase zinc ribbon domain AMEC673_17980 PF00293 NUDIX domain AMEC673_17985 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AMEC673_17990 PF01475 Ferric uptake regulator family AMEC673_18000 PF01894 Uncharacterised protein family UPF0047 AMEC673_18005 PF05736 OprF membrane domain AMEC673_18005 PF00691 OmpA family AMEC673_18010 PF03796 DnaB-like helicase C terminal domain AMEC673_18010 PF00772 DnaB-like helicase N terminal domain AMEC673_18035 PF03473 MOSC domain AMEC673_18035 PF03475 3-alpha domain AMEC673_18045 PF00486 Transcriptional regulatory protein, C terminal AMEC673_18045 PF00072 Response regulator receiver domain AMEC673_18050 PF16750 Sensor domain of 2-component histidine kinase AMEC673_18050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_18050 PF00672 HAMP domain AMEC673_18050 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_18070 PF00873 AcrB/AcrD/AcrF family AMEC673_18075 PF01281 Ribosomal protein L9, N-terminal domain AMEC673_18075 PF03948 Ribosomal protein L9, C-terminal domain AMEC673_18080 PF01084 Ribosomal protein S18 AMEC673_18085 PF01250 Ribosomal protein S6 AMEC673_18095 PF00005 ABC transporter AMEC673_18105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_18105 PF08447 PAS fold AMEC673_18110 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMEC673_18110 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_18110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_18115 PF00672 HAMP domain AMEC673_18115 PF02743 Cache domain AMEC673_18115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMEC673_18130 PF03601 Conserved hypothetical protein 698 AMEC673_18135 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMEC673_18140 PF00248 Aldo/keto reductase family AMEC673_18160 PF00474 Sodium:solute symporter family AMEC673_18165 PF00593 TonB dependent receptor AMEC673_18165 PF07715 TonB-dependent Receptor Plug Domain AMEC673_18170 PF01545 Cation efflux family AMEC673_18170 PF16916 Dimerisation domain of Zinc Transporter AMEC673_18175 PF00722 Glycosyl hydrolases family 16 AMEC673_18190 PF08448 PAS fold AMEC673_18190 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_18200 PF14310 Fibronectin type III-like domain AMEC673_18200 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMEC673_18200 PF00933 Glycosyl hydrolase family 3 N terminal domain AMEC673_18205 PF07690 Major Facilitator Superfamily AMEC673_18210 PF00232 Glycosyl hydrolase family 1 AMEC673_18215 PF00356 Bacterial regulatory proteins, lacI family AMEC673_18220 PF00083 Sugar (and other) transporter AMEC673_18225 PF00664 ABC transporter transmembrane region AMEC673_18225 PF00005 ABC transporter AMEC673_18230 PF00005 ABC transporter AMEC673_18230 PF00664 ABC transporter transmembrane region AMEC673_18235 PF08173 Membrane bound YbgT-like protein AMEC673_18240 PF02322 Cytochrome bd terminal oxidase subunit II AMEC673_18245 PF01654 Cytochrome bd terminal oxidase subunit I AMEC673_18255 PF00158 Sigma-54 interaction domain AMEC673_18255 PF00072 Response regulator receiver domain AMEC673_18255 PF02954 Bacterial regulatory protein, Fis family AMEC673_18280 PF13474 SnoaL-like domain AMEC673_18285 PF00857 Isochorismatase family AMEC673_18290 PF00034 Cytochrome c AMEC673_18295 PF01979 Amidohydrolase family AMEC673_18300 PF05726 Pirin C-terminal cupin domain AMEC673_18300 PF02678 Pirin AMEC673_18310 PF00593 TonB dependent receptor AMEC673_18310 PF07715 TonB-dependent Receptor Plug Domain AMEC673_18325 PF02649 Type I GTP cyclohydrolase folE2 AMEC673_18380 PF05532 CsbD-like AMEC673_18395 PF08281 Sigma-70, region 4 AMEC673_18395 PF04542 Sigma-70 region 2 AMEC673_18420 PF00472 RF-1 domain AMEC673_18425 PF00364 Biotin-requiring enzyme AMEC673_18425 PF00561 alpha/beta hydrolase fold AMEC673_18450 PF01292 Prokaryotic cytochrome b561 AMEC673_18455 PF04264 YceI-like domain AMEC673_18460 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMEC673_18465 PF07715 TonB-dependent Receptor Plug Domain AMEC673_18465 PF00593 TonB dependent receptor AMEC673_18475 PF01048 Phosphorylase superfamily AMEC673_18480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_18480 PF03466 LysR substrate binding domain AMEC673_18485 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMEC673_18490 PF16884 N-terminal domain of oxidoreductase AMEC673_18490 PF00107 Zinc-binding dehydrogenase AMEC673_18495 PF00360 Phytochrome region AMEC673_18495 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_18495 PF01590 GAF domain AMEC673_18495 PF00563 EAL domain AMEC673_18500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_18500 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_18500 PF09308 LuxQ, periplasmic AMEC673_18500 PF00072 Response regulator receiver domain AMEC673_18510 PF00296 Luciferase-like monooxygenase AMEC673_18515 PF01380 SIS domain AMEC673_18520 PF00455 DeoR C terminal sensor domain AMEC673_18520 PF08220 DeoR-like helix-turn-helix domain AMEC673_18525 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMEC673_18525 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMEC673_18530 PF00132 Bacterial transferase hexapeptide (six repeats) AMEC673_18530 PF14602 Hexapeptide repeat of succinyl-transferase AMEC673_18530 PF12804 MobA-like NTP transferase domain AMEC673_18540 PF00892 EamA-like transporter family AMEC673_18545 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMEC673_18545 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMEC673_18550 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain AMEC673_18550 PF00730 HhH-GPD superfamily base excision DNA repair protein AMEC673_18555 PF00144 Beta-lactamase AMEC673_18560 PF17944 Arginine decarboxylase C-terminal helical extension AMEC673_18560 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMEC673_18560 PF17810 Arginine decarboxylase helical bundle domain AMEC673_18570 PF02233 NAD(P) transhydrogenase beta subunit AMEC673_18575 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMEC673_18580 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMEC673_18580 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMEC673_18620 PF07715 TonB-dependent Receptor Plug Domain AMEC673_18620 PF00593 TonB dependent receptor AMEC673_18660 PF01040 UbiA prenyltransferase family AMEC673_18665 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AMEC673_18670 PF00510 Cytochrome c oxidase subunit III AMEC673_18675 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMEC673_18680 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMEC673_18680 PF06481 COX Aromatic Rich Motif AMEC673_18705 PF00544 Pectate lyase AMEC673_18735 PF02796 Helix-turn-helix domain of resolvase AMEC673_18735 PF00239 Resolvase, N terminal domain AMEC673_18745 PF00118 TCP-1/cpn60 chaperonin family AMEC673_18750 PF00166 Chaperonin 10 Kd subunit AMEC673_18760 PF03091 CutA1 divalent ion tolerance protein AMEC673_18765 PF11412 Disulphide bond corrector protein DsbC AMEC673_18765 PF02683 Cytochrome C biogenesis protein transmembrane region AMEC673_18770 PF01551 Peptidase family M23 AMEC673_18775 PF01220 Dehydroquinase class II AMEC673_18780 PF00364 Biotin-requiring enzyme AMEC673_18785 PF00289 Biotin carboxylase, N-terminal domain AMEC673_18785 PF02785 Biotin carboxylase C-terminal domain AMEC673_18785 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMEC673_18805 PF11490 DNA polymerase III polC-type N-terminus II AMEC673_18805 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMEC673_18805 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMEC673_18805 PF14579 Helix-hairpin-helix motif AMEC673_18805 PF02811 PHP domain AMEC673_18805 PF00929 Exonuclease AMEC673_18825 PF01355 High potential iron-sulfur protein AMEC673_18830 PF01425 Amidase AMEC673_18845 PF01207 Dihydrouridine synthase (Dus) AMEC673_18850 PF02954 Bacterial regulatory protein, Fis family AMEC673_18855 PF02142 MGS-like domain AMEC673_18855 PF01808 AICARFT/IMPCHase bienzyme AMEC673_18865 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMEC673_18865 PF02843 Phosphoribosylglycinamide synthetase, C domain AMEC673_18865 PF02844 Phosphoribosylglycinamide synthetase, N domain AMEC673_18880 PF00027 Cyclic nucleotide-binding domain AMEC673_18880 PF00520 Ion transport protein AMEC673_18885 PF00485 Phosphoribulokinase / Uridine kinase family AMEC673_18895 PF00486 Transcriptional regulatory protein, C terminal AMEC673_18895 PF00072 Response regulator receiver domain AMEC673_18900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMEC673_18900 PF00512 His Kinase A (phospho-acceptor) domain AMEC673_18900 PF00672 HAMP domain AMEC673_18910 PF01055 Glycosyl hydrolases family 31 AMEC673_18910 PF13802 Galactose mutarotase-like AMEC673_18910 PF17137 Domain of unknown function (DUF5110) AMEC673_18910 PF16338 Domain of unknown function (DUF4968) AMEC673_18920 PF01430 Hsp33 protein AMEC673_18925 PF01479 S4 domain AMEC673_18930 PF11356 Type II secretion system protein C AMEC673_18935 PF00263 Bacterial type II and III secretion system protein AMEC673_18935 PF03958 Bacterial type II/III secretion system short domain AMEC673_18940 PF00437 Type II/IV secretion system protein AMEC673_18945 PF00482 Type II secretion system (T2SS), protein F AMEC673_18950 PF07963 Prokaryotic N-terminal methylation motif AMEC673_18950 PF08334 Type II secretion system (T2SS), protein G AMEC673_18955 PF12019 Type II transport protein GspH AMEC673_18960 PF07963 Prokaryotic N-terminal methylation motif AMEC673_18960 PF02501 Type II secretion system (T2SS), protein I AMEC673_18965 PF11612 Type II secretion system (T2SS), protein J AMEC673_18965 PF07963 Prokaryotic N-terminal methylation motif AMEC673_18975 PF12693 GspL periplasmic domain AMEC673_18975 PF05134 Type II secretion system (T2SS), protein L AMEC673_18980 PF04612 Type II secretion system (T2SS), protein M AMEC673_18995 PF12706 Beta-lactamase superfamily domain AMEC673_19000 PF00171 Aldehyde dehydrogenase family AMEC673_19005 PF01931 Protein of unknown function DUF84 AMEC673_19010 PF13419 Haloacid dehalogenase-like hydrolase AMEC673_19015 PF00293 NUDIX domain AMEC673_19020 PF00459 Inositol monophosphatase family AMEC673_19035 PF04349 Periplasmic glucan biosynthesis protein, MdoG AMEC673_19045 PF06794 Uncharacterised protein family (UPF0270) AMEC673_19050 PF00561 alpha/beta hydrolase fold AMEC673_19060 PF12848 ABC transporter AMEC673_19060 PF00005 ABC transporter AMEC673_19080 PF04102 SlyX AMEC673_19090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMEC673_19090 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMEC673_19100 PF03449 Transcription elongation factor, N-terminal AMEC673_19100 PF01272 Transcription elongation factor, GreA/GreB, C-term AMEC673_19105 PF17674 HHH domain AMEC673_19105 PF16921 Tex protein YqgF-like domain AMEC673_19105 PF00575 S1 RNA binding domain AMEC673_19105 PF09371 Tex-like protein N-terminal domain AMEC673_19125 PF00561 alpha/beta hydrolase fold AMEC673_19130 PF00156 Phosphoribosyl transferase domain AMEC673_19140 PF01521 Iron-sulphur cluster biosynthesis AMEC673_19140 PF01106 NifU-like domain AMEC673_19150 PF01177 Asp/Glu/Hydantoin racemase AMEC673_19165 PF01554 MatE AMEC673_19180 PF02630 SCO1/SenC AMEC673_19185 PF01040 UbiA prenyltransferase family AMEC673_19190 PF02628 Cytochrome oxidase assembly protein AMEC673_19210 PF00510 Cytochrome c oxidase subunit III AMEC673_19215 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMEC673_19220 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMEC673_19225 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMEC673_19225 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMEC673_19230 PF01726 LexA DNA binding domain AMEC673_19230 PF00717 Peptidase S24-like AMEC673_19240 PF17151 Periplasmic sensor domain AMEC673_19240 PF00990 Diguanylate cyclase, GGDEF domain AMEC673_19245 PF01553 Acyltransferase AMEC673_19250 PF00585 C-terminal regulatory domain of Threonine dehydratase AMEC673_19250 PF00291 Pyridoxal-phosphate dependent enzyme AMEC673_19255 PF00920 Dehydratase family AMEC673_19260 PF03458 UPF0126 domain AMEC673_19265 PF01078 Magnesium chelatase, subunit ChlI AMEC673_19265 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMEC673_19270 PF03466 LysR substrate binding domain AMEC673_19270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMEC673_19275 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMEC673_19275 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMEC673_19280 PF07690 Major Facilitator Superfamily AMEC673_19285 PF00326 Prolyl oligopeptidase family AMEC673_19290 PF01103 Surface antigen AMEC673_19290 PF17243 POTRA domain TamA domain 1 AMEC673_19290 PF07244 Surface antigen variable number repeat AMEC673_19295 PF04357 TamB, inner membrane protein subunit of TAM complex AMEC673_19320 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMEC673_19320 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMEC673_19330 PF01472 PUA domain AMEC673_19330 PF00696 Amino acid kinase family AMEC673_19350 PF03109 ABC1 family AMEC673_19375 PF01979 Amidohydrolase family AMEC673_19395 PF01206 Sulfurtransferase TusA AMEC673_19400 PF00156 Phosphoribosyl transferase domain AMEC673_19405 PF03725 3' exoribonuclease family, domain 2 AMEC673_19405 PF01138 3' exoribonuclease family, domain 1 AMEC673_19410 PF03755 YicC-like family, N-terminal region AMEC673_19410 PF08340 Domain of unknown function (DUF1732) AMEC673_19430 PF00232 Glycosyl hydrolase family 1 AMEC673_19440 PF00356 Bacterial regulatory proteins, lacI family AMEC673_19455 PF00691 OmpA family AMEC673_19455 PF05736 OprF membrane domain AMEC673_19460 PF01966 HD domain AMEC673_19475 PF00043 Glutathione S-transferase, C-terminal domain AMEC673_19475 PF02798 Glutathione S-transferase, N-terminal domain AMEC673_19485 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMEC673_19485 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AMEC673_19490 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMEC673_19490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMEC673_19495 PF00231 ATP synthase AMEC673_19500 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMEC673_19500 PF00306 ATP synthase alpha/beta chain, C terminal domain AMEC673_19500 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMEC673_19505 PF00213 ATP synthase delta (OSCP) subunit AMEC673_19510 PF00430 ATP synthase B/B' CF(0) AMEC673_19515 PF00137 ATP synthase subunit C AMEC673_19520 PF00119 ATP synthase A chain AMEC673_19530 PF17762 HTH domain found in ParB protein AMEC673_19530 PF02195 ParB-like nuclease domain AMEC673_19535 PF13614 AAA domain AMEC673_19540 PF02527 rRNA small subunit methyltransferase G AMEC673_19545 PF13932 GidA associated domain AMEC673_19545 PF01134 Glucose inhibited division protein A AMEC673_19560 PF00258 Flavodoxin AMEC673_19565 PF01926 50S ribosome-binding GTPase AMEC673_19565 PF10396 GTP-binding protein TrmE N-terminus AMEC673_19565 PF12631 MnmE helical domain AMEC673_19570 PF04461 Protein of unknown function (DUF520) AMEC673_19575 PF14849 YidC periplasmic domain AMEC673_19575 PF02096 60Kd inner membrane protein AMEC673_19580 PF01809 Putative membrane protein insertion efficiency factor AMEC673_19585 PF00825 Ribonuclease P AMEC673_19590 PF00468 Ribosomal protein L34