locus-tag class description MADE_000001020715 PF08019 Phosphoethanolamine transferase EptA/EptB MADE_000001020715 PF00884 Sulfatase MADE_000001020755 PF01636 Phosphotransferase enzyme family MADE_000001020780 PF00672 HAMP domain MADE_000001020780 PF02743 Cache domain MADE_000001020780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_000001020785 PF04545 Sigma-70, region 4 MADE_000001020785 PF04542 Sigma-70 region 2 MADE_000001020785 PF00140 Sigma-70 factor, region 1.2 MADE_000001020785 PF03979 Sigma-70 factor, region 1.1 MADE_000001020785 PF04546 Sigma-70, non-essential region MADE_000001020785 PF04539 Sigma-70 region 3 MADE_000001020790 PF08275 DNA primase catalytic core, N-terminal domain MADE_000001020790 PF10410 DnaB-helicase binding domain of primase MADE_000001020790 PF08278 DNA primase DnaG DnaB-binding MADE_000001020790 PF01807 CHC2 zinc finger MADE_000001020805 PF00355 Rieske [2Fe-2S] domain MADE_000001020805 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal MADE_000001020810 PF00033 Cytochrome b/b6/petB MADE_000001020810 PF00032 Cytochrome b(C-terminal)/b6/petD MADE_000001020840 PF00557 Metallopeptidase family M24 MADE_000001020845 PF00696 Amino acid kinase family MADE_000001020870 PF00239 Resolvase, N terminal domain MADE_000001020870 PF02796 Helix-turn-helix domain of resolvase MADE_000001020915 PF01618 MotA/TolQ/ExbB proton channel family MADE_000001020920 PF01047 MarR family MADE_000001020935 PF00378 Enoyl-CoA hydratase/isomerase MADE_000001020935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MADE_000001020935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MADE_000001020950 PF03707 Bacterial signalling protein N terminal repeat MADE_000001020950 PF00563 EAL domain MADE_000001020950 PF00990 Diguanylate cyclase, GGDEF domain MADE_000001020955 PF05193 Peptidase M16 inactive domain MADE_000001020955 PF00675 Insulinase (Peptidase family M16) MADE_000001020960 PF00300 Histidine phosphatase superfamily (branch 1) MADE_000001020975 PF01578 Cytochrome C assembly protein MADE_000001020980 PF00448 SRP54-type protein, GTPase domain MADE_000001020980 PF02881 SRP54-type protein, helical bundle domain MADE_000001020980 PF02978 Signal peptide binding domain MADE_000001021025 PF00873 AcrB/AcrD/AcrF family MADE_000001021030 PF13533 Biotin-lipoyl like MADE_000001021035 PF00664 ABC transporter transmembrane region MADE_000001021035 PF00005 ABC transporter MADE_000001021050 PF00886 Ribosomal protein S16 MADE_000001021055 PF05239 PRC-barrel domain MADE_000001021055 PF01782 RimM N-terminal domain MADE_000001021060 PF01746 tRNA (Guanine-1)-methyltransferase MADE_000001021065 PF01245 Ribosomal protein L19 MADE_000001021070 PF03458 UPF0126 domain MADE_000001021075 PF00378 Enoyl-CoA hydratase/isomerase MADE_000001021080 PF00793 DAHP synthetase I family MADE_000001021085 PF01817 Chorismate mutase type II MADE_000001021085 PF02153 Prephenate dehydrogenase MADE_000001021090 PF00800 Prephenate dehydratase MADE_000001021090 PF01817 Chorismate mutase type II MADE_000001021100 PF01253 Translation initiation factor SUI1 MADE_000001021110 PF00072 Response regulator receiver domain MADE_000001021110 PF00486 Transcriptional regulatory protein, C terminal MADE_000001021120 PF00563 EAL domain MADE_000001021120 PF00990 Diguanylate cyclase, GGDEF domain MADE_000001021120 PF03707 Bacterial signalling protein N terminal repeat MADE_000001021130 PF00512 His Kinase A (phospho-acceptor) domain MADE_000001021130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_000001021140 PF00158 Sigma-54 interaction domain MADE_000001021140 PF00072 Response regulator receiver domain MADE_000001021145 PF00700 Bacterial flagellin C-terminal helical region MADE_000001021145 PF07196 Flagellin hook IN motif MADE_000001021145 PF00669 Bacterial flagellin N-terminal helical region MADE_000001021160 PF01336 OB-fold nucleic acid binding domain MADE_000001021160 PF00152 tRNA synthetases class II (D, K and N) MADE_000001021160 PF02938 GAD domain MADE_000001021165 PF00293 NUDIX domain MADE_000001021170 PF02075 Crossover junction endodeoxyribonuclease RuvC MADE_000001021180 PF05491 RuvB C-terminal winged helix domain MADE_000001021180 PF17864 RuvB AAA lid domain MADE_000001021180 PF05496 Holliday junction DNA helicase RuvB P-loop domain MADE_000001021190 PF03061 Thioesterase superfamily MADE_000001021195 PF01618 MotA/TolQ/ExbB proton channel family MADE_000001021200 PF02472 Biopolymer transport protein ExbD/TolR MADE_000001021210 PF04052 TolB amino-terminal domain MADE_000001021210 PF07676 WD40-like Beta Propeller Repeat MADE_000001021230 PF02445 Quinolinate synthetase A protein MADE_000001021245 PF01734 Patatin-like phospholipase MADE_000001021250 PF02558 Ketopantoate reductase PanE/ApbA MADE_000001021250 PF08546 Ketopantoate reductase PanE/ApbA C terminal MADE_000001021260 PF09308 LuxQ, periplasmic MADE_000001021260 PF00072 Response regulator receiver domain MADE_000001021260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_000001021260 PF00512 His Kinase A (phospho-acceptor) domain MADE_000001021270 PF02774 Semialdehyde dehydrogenase, dimerisation domain MADE_000001021270 PF01118 Semialdehyde dehydrogenase, NAD binding domain MADE_000001021280 PF01292 Prokaryotic cytochrome b561 MADE_000001021285 PF03707 Bacterial signalling protein N terminal repeat MADE_000001021285 PF00563 EAL domain MADE_000001021285 PF00990 Diguanylate cyclase, GGDEF domain MADE_000001021300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_000001021300 PF03466 LysR substrate binding domain MADE_000001021305 PF01863 Protein of unknown function DUF45 MADE_000001021315 PF00873 AcrB/AcrD/AcrF family MADE_000001021325 PF08361 MAATS-type transcriptional repressor, C-terminal region MADE_000001021325 PF00440 Bacterial regulatory proteins, tetR family MADE_000001021330 PF00593 TonB dependent receptor MADE_000001021330 PF07715 TonB-dependent Receptor Plug Domain MADE_000001021340 PF00873 AcrB/AcrD/AcrF family MADE_000001021350 PF00990 Diguanylate cyclase, GGDEF domain MADE_000001021360 PF02470 MlaD protein MADE_000001021365 PF04403 Paraquat-inducible protein A MADE_000001021380 PF01336 OB-fold nucleic acid binding domain MADE_000001021380 PF00152 tRNA synthetases class II (D, K and N) MADE_000001021450 PF01207 Dihydrouridine synthase (Dus) MADE_000001021550 PF12792 CSS motif domain associated with EAL MADE_000001021550 PF00563 EAL domain MADE_000001021555 PF00005 ABC transporter MADE_000001021560 PF12704 MacB-like periplasmic core domain MADE_000001021560 PF02687 FtsX-like permease family MADE_000001021565 PF00375 Sodium:dicarboxylate symporter family MADE_000001021575 PF04996 Succinylarginine dihydrolase MADE_000001021585 PF08272 Topoisomerase I zinc-ribbon-like MADE_000001021585 PF01131 DNA topoisomerase MADE_000001021585 PF01751 Toprim domain MADE_000001021585 PF01396 Topoisomerase DNA binding C4 zinc finger MADE_000001021605 PF04198 Putative sugar-binding domain MADE_000001021610 PF13419 Haloacid dehalogenase-like hydrolase MADE_000001021620 PF07715 TonB-dependent Receptor Plug Domain MADE_000001021620 PF00593 TonB dependent receptor MADE_000001021640 PF02371 Transposase IS116/IS110/IS902 family MADE_000001021640 PF01548 Transposase MADE_000001021645 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MADE_000001021650 PF01799 [2Fe-2S] binding domain MADE_000001021650 PF00111 2Fe-2S iron-sulfur cluster binding domain MADE_000001021680 PF08007 Cupin superfamily protein MADE_000001021685 PF00211 Adenylate and Guanylate cyclase catalytic domain MADE_000001021690 PF08328 Adenylosuccinate lyase C-terminal MADE_000001021690 PF00206 Lyase MADE_000001021695 PF04356 Protein of unknown function (DUF489) MADE_000001021705 PF00849 RNA pseudouridylate synthase MADE_000001021715 PF03971 Monomeric isocitrate dehydrogenase MADE_000001021720 PF00313 'Cold-shock' DNA-binding domain MADE_000001021725 PF02617 ATP-dependent Clp protease adaptor protein ClpS MADE_000001021735 PF01176 Translation initiation factor 1A / IF-1 MADE_000001021740 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_000001021745 PF04217 Protein of unknown function, DUF412 MADE_000001021750 PF10263 SprT-like family MADE_000001021755 PF01343 Peptidase family S49 MADE_000001021770 PF00881 Nitroreductase family MADE_000001021780 PF00710 Asparaginase, N-terminal MADE_000001021780 PF17763 Glutaminase/Asparaginase C-terminal domain MADE_000001021785 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family MADE_000001021785 PF04055 Radical SAM superfamily MADE_000001021790 PF03099 Biotin/lipoate A/B protein ligase family MADE_000001021795 PF04359 Protein of unknown function (DUF493) MADE_000001021800 PF07943 Penicillin-binding protein 5, C-terminal domain MADE_000001021800 PF00768 D-alanyl-D-alanine carboxypeptidase MADE_000001021805 PF03330 Lytic transglycolase MADE_000001021805 PF05036 Sporulation related domain MADE_000001021810 PF01098 Cell cycle protein MADE_000001021815 PF00905 Penicillin binding protein transpeptidase domain MADE_000001021815 PF03717 Penicillin-binding Protein dimerisation domain MADE_000001021820 PF02590 Predicted SPOUT methyltransferase MADE_000001021830 PF01467 Cytidylyltransferase-like MADE_000001021835 PF06144 DNA polymerase III, delta subunit MADE_000001021835 PF14840 Processivity clamp loader gamma complex DNA pol III C-term MADE_000001021840 PF04390 Lipopolysaccharide-assembly MADE_000001021845 PF00133 tRNA synthetases class I (I, L, M and V) MADE_000001021845 PF08264 Anticodon-binding domain of tRNA MADE_000001021845 PF13603 Leucyl-tRNA synthetase, Domain 2 MADE_000001021855 PF05362 Lon protease (S16) C-terminal proteolytic domain MADE_000001021855 PF13654 AAA domain MADE_000001021860 PF12697 Alpha/beta hydrolase family MADE_000001021865 PF00990 Diguanylate cyclase, GGDEF domain MADE_000001021870 PF00106 short chain dehydrogenase MADE_000001021875 PF01985 CRS1 / YhbY (CRM) domain MADE_000001021885 PF01434 Peptidase family M41 MADE_000001021885 PF17862 AAA+ lid domain MADE_000001021885 PF06480 FtsH Extracellular MADE_000001021885 PF00004 ATPase family associated with various cellular activities (AAA) MADE_000001021895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MADE_000001021895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MADE_000001021895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MADE_000001021895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MADE_000001021900 PF00121 Triosephosphate isomerase MADE_000001021905 PF03840 Preprotein translocase SecG subunit MADE_000001021915 PF13188 PAS domain MADE_000001021915 PF00563 EAL domain MADE_000001021915 PF00990 Diguanylate cyclase, GGDEF domain MADE_000001021915 PF03707 Bacterial signalling protein N terminal repeat MADE_000001021920 PF01679 Proteolipid membrane potential modulator MADE_000001021930 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MADE_000001021930 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MADE_000001021935 PF00781 Diacylglycerol kinase catalytic domain MADE_000001021935 PF02142 MGS-like domain MADE_000001021965 PF00474 Sodium:solute symporter family MADE_000001022000 PF00664 ABC transporter transmembrane region MADE_000001022000 PF00005 ABC transporter MADE_000001022010 PF07044 Protein of unknown function (DUF1329) MADE_000001022025 PF04957 Ribosome modulation factor MADE_000001022030 PF07977 FabA-like domain MADE_000001022045 PF00999 Sodium/hydrogen exchanger family MADE_000001022050 PF00210 Ferritin-like domain MADE_000001022070 PF01066 CDP-alcohol phosphatidyltransferase MADE_000001022075 PF00072 Response regulator receiver domain MADE_000001022075 PF00196 Bacterial regulatory proteins, luxR family MADE_000001022080 PF01027 Inhibitor of apoptosis-promoting Bax1 MADE_000001022110 PF02224 Cytidylate kinase MADE_000001022115 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MADE_000001022120 PF00266 Aminotransferase class-V MADE_000001022135 PF01548 Transposase MADE_000001022135 PF02371 Transposase IS116/IS110/IS902 family MADE_000001022145 PF01548 Transposase MADE_000001022145 PF02371 Transposase IS116/IS110/IS902 family MADE_000001022225 PF00977 Histidine biosynthesis protein MADE_000001022230 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase MADE_000001022230 PF01502 Phosphoribosyl-AMP cyclohydrolase MADE_000001022250 PF01066 CDP-alcohol phosphatidyltransferase MADE_000001022270 PF09330 D-lactate dehydrogenase, membrane binding MADE_000001022270 PF01565 FAD binding domain MADE_000001022275 PF07724 AAA domain (Cdc48 subfamily) MADE_000001022275 PF00004 ATPase family associated with various cellular activities (AAA) MADE_000001022275 PF10431 C-terminal, D2-small domain, of ClpB protein MADE_000001022275 PF02861 Clp amino terminal domain, pathogenicity island component MADE_000001022275 PF17871 AAA lid domain MADE_000001022280 PF06827 Zinc finger found in FPG and IleRS MADE_000001022280 PF00133 tRNA synthetases class I (I, L, M and V) MADE_000001022280 PF08264 Anticodon-binding domain of tRNA MADE_000001022295 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MADE_000001022305 PF01702 Queuine tRNA-ribosyltransferase MADE_000001022335 PF00535 Glycosyl transferase family 2 MADE_000001022345 PF01943 Polysaccharide biosynthesis protein MADE_000001022355 PF08889 WbqC-like protein family MADE_000001022360 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MADE_000001022365 PF00265 Thymidine kinase MADE_000001022375 PF00356 Bacterial regulatory proteins, lacI family MADE_000001022410 PF01926 50S ribosome-binding GTPase MADE_000001022415 PF00588 SpoU rRNA Methylase family MADE_000001022415 PF08032 RNA 2'-O ribose methyltransferase substrate binding MADE_000001022420 PF00378 Enoyl-CoA hydratase/isomerase MADE_000001022420 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MADE_000001022420 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MADE_000001022435 PF00171 Aldehyde dehydrogenase family MADE_000001022440 PF00732 GMC oxidoreductase MADE_000001022440 PF05199 GMC oxidoreductase MADE_000001022455 PF05971 RNA methyltransferase MADE_000001022490 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) MADE_000001022515 PF00476 DNA polymerase family A MADE_000001022515 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MADE_000001022515 PF01367 5'-3' exonuclease, C-terminal SAM fold MADE_000001022595 PF01121 Dephospho-CoA kinase MADE_000001022605 PF02491 SHS2 domain inserted in FTSA MADE_000001022610 PF03799 Cell division protein FtsQ MADE_000001022610 PF08478 POTRA domain, FtsQ-type MADE_000001022625 PF05161 MOFRL family MADE_000001022625 PF13660 Domain of unknown function (DUF4147) MADE_000001022630 PF00474 Sodium:solute symporter family MADE_000001022635 PF07715 TonB-dependent Receptor Plug Domain MADE_000001022635 PF00593 TonB dependent receptor MADE_000001022640 PF00310 Glutamine amidotransferases class-II MADE_000001022640 PF01645 Conserved region in glutamate synthase MADE_000001022640 PF01493 GXGXG motif MADE_000001022640 PF04898 Glutamate synthase central domain MADE_000001022665 PF07715 TonB-dependent Receptor Plug Domain MADE_000001022695 PF14592 Chondroitinase B MADE_000001022745 PF02472 Biopolymer transport protein ExbD/TolR MADE_000001022760 PF13181 Tetratricopeptide repeat MADE_000001022760 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) MADE_000001022765 PF01270 Glycosyl hydrolases family 8 MADE_000001022775 PF03552 Cellulose synthase MADE_000001022775 PF07238 PilZ domain MADE_000001022775 PF00535 Glycosyl transferase family 2 MADE_000001022790 PF05175 Methyltransferase small domain MADE_000001022795 PF13460 NAD(P)H-binding MADE_000001022800 PF00326 Prolyl oligopeptidase family MADE_000001022800 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region MADE_000001022805 PF08000 Bacterial PH domain MADE_000001022810 PF08448 PAS fold MADE_000001022810 PF00990 Diguanylate cyclase, GGDEF domain MADE_000001022810 PF00563 EAL domain MADE_000001022815 PF00291 Pyridoxal-phosphate dependent enzyme MADE_000001022820 PF07969 Amidohydrolase family MADE_000001022830 PF00753 Metallo-beta-lactamase superfamily MADE_000001022840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_000001022840 PF03466 LysR substrate binding domain MADE_000001022845 PF13230 Glutamine amidotransferases class-II MADE_000001022850 PF05360 yiaA/B two helix domain MADE_000001022870 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin MADE_000001022875 PF00593 TonB dependent receptor MADE_000001022875 PF07715 TonB-dependent Receptor Plug Domain MADE_000001022880 PF00171 Aldehyde dehydrogenase family MADE_000001022885 PF01613 Flavin reductase like domain MADE_000001022890 PF00881 Nitroreductase family MADE_000001022895 PF00561 alpha/beta hydrolase fold MADE_000001022900 PF01042 Endoribonuclease L-PSP MADE_000001022905 PF00857 Isochorismatase family MADE_000001022910 PF00296 Luciferase-like monooxygenase MADE_000001022915 PF00440 Bacterial regulatory proteins, tetR family MADE_000001022915 PF08362 YcdC-like protein, C-terminal region MADE_000001022930 PF09905 DNA-binding protein VF530 MADE_000001022935 PF00753 Metallo-beta-lactamase superfamily MADE_000001022935 PF16123 Hydroxyacylglutathione hydrolase C-terminus MADE_000001022945 PF11799 impB/mucB/samB family C-terminal domain MADE_000001022945 PF00817 impB/mucB/samB family MADE_000001022945 PF11798 IMS family HHH motif MADE_000001022955 PF02424 ApbE family MADE_000001022960 PF00970 Oxidoreductase FAD-binding domain MADE_000001022960 PF00175 Oxidoreductase NAD-binding domain MADE_000001022960 PF00111 2Fe-2S iron-sulfur cluster binding domain MADE_000001022965 PF02508 Rnf-Nqr subunit, membrane protein MADE_000001022970 PF02508 Rnf-Nqr subunit, membrane protein MADE_000001022975 PF04205 FMN-binding domain MADE_000001022980 PF03116 NQR2, RnfD, RnfE family MADE_000001022985 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) MADE_000001022985 PF11973 NQRA C-terminal domain MADE_000001022990 PF07055 Enoyl reductase FAD binding domain MADE_000001022990 PF12241 Trans-2-enoyl-CoA reductase catalytic region MADE_000001022990 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase MADE_000001022995 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MADE_000001022995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MADE_000001023000 PF00311 Phosphoenolpyruvate carboxylase MADE_000001023005 PF00141 Peroxidase MADE_000001023010 PF00141 Peroxidase MADE_000001023020 PF00056 lactate/malate dehydrogenase, NAD binding domain MADE_000001023020 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MADE_000001023025 PF01316 Arginine repressor, DNA binding domain MADE_000001023025 PF02863 Arginine repressor, C-terminal domain MADE_000001023050 PF00485 Phosphoribulokinase / Uridine kinase family MADE_000001023055 PF07670 Nucleoside recognition MADE_000001023055 PF07662 Na+ dependent nucleoside transporter C-terminus MADE_000001023055 PF01773 Na+ dependent nucleoside transporter N-terminus MADE_000001023075 PF00990 Diguanylate cyclase, GGDEF domain MADE_000001023075 PF00072 Response regulator receiver domain MADE_000001023080 PF02811 PHP domain MADE_000001023080 PF00929 Exonuclease MADE_000001023080 PF07733 Bacterial DNA polymerase III alpha NTPase domain MADE_000001023080 PF14579 Helix-hairpin-helix motif MADE_000001023080 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MADE_000001023085 PF00571 CBS domain MADE_000001023090 PF00474 Sodium:solute symporter family MADE_000001023100 PF07689 KaiB domain MADE_000001023100 PF00512 His Kinase A (phospho-acceptor) domain MADE_000001023100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_000001023110 PF18030 RimK PreATP-grasp domain MADE_000001023110 PF08443 RimK-like ATP-grasp domain MADE_000001023120 PF18030 RimK PreATP-grasp domain MADE_000001023120 PF08443 RimK-like ATP-grasp domain MADE_000001023130 PF00196 Bacterial regulatory proteins, luxR family MADE_000001023130 PF00072 Response regulator receiver domain MADE_000001023145 PF02690 Na+/Pi-cotransporter MADE_000001023150 PF00248 Aldo/keto reductase family MADE_000001023170 PF08448 PAS fold MADE_000001023170 PF00563 EAL domain MADE_000001023170 PF00990 Diguanylate cyclase, GGDEF domain MADE_000001023170 PF08447 PAS fold MADE_000001023180 PF01348 Type II intron maturase MADE_000001023180 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MADE_000001023185 PF03143 Elongation factor Tu C-terminal domain MADE_000001023185 PF03144 Elongation factor Tu domain 2 MADE_000001023185 PF00009 Elongation factor Tu GTP binding domain MADE_000001023210 PF02237 Biotin protein ligase C terminal domain MADE_000001023210 PF03099 Biotin/lipoate A/B protein ligase family MADE_000001023210 PF08279 HTH domain MADE_000001023230 PF03412 Peptidase C39 family MADE_000001023230 PF00005 ABC transporter MADE_000001023230 PF00664 ABC transporter transmembrane region MADE_000001023235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_000001023235 PF03466 LysR substrate binding domain MADE_000001023285 PF00177 Ribosomal protein S7p/S5e MADE_000001023290 PF00164 Ribosomal protein S12/S23 MADE_000001023295 PF04998 RNA polymerase Rpb1, domain 5 MADE_000001023295 PF05000 RNA polymerase Rpb1, domain 4 MADE_000001023295 PF04997 RNA polymerase Rpb1, domain 1 MADE_000001023295 PF00623 RNA polymerase Rpb1, domain 2 MADE_000001023295 PF04983 RNA polymerase Rpb1, domain 3 MADE_000001023300 PF04561 RNA polymerase Rpb2, domain 2 MADE_000001023300 PF04563 RNA polymerase beta subunit MADE_000001023300 PF04565 RNA polymerase Rpb2, domain 3 MADE_000001023300 PF00562 RNA polymerase Rpb2, domain 6 MADE_000001023300 PF04560 RNA polymerase Rpb2, domain 7 MADE_000001023300 PF10385 RNA polymerase beta subunit external 1 domain MADE_000001023310 PF00466 Ribosomal protein L10 MADE_000001023315 PF00687 Ribosomal protein L1p/L10e family MADE_000001023320 PF00298 Ribosomal protein L11, RNA binding domain MADE_000001023320 PF03946 Ribosomal protein L11, N-terminal domain MADE_000001023340 PF00467 KOW motif MADE_000001023340 PF02357 Transcription termination factor nusG MADE_000001023345 PF00584 SecE/Sec61-gamma subunits of protein translocation complex MADE_000001023355 PF00664 ABC transporter transmembrane region MADE_000001023355 PF00005 ABC transporter MADE_000001023360 PF03737 Aldolase/RraA MADE_000001023365 PF01431 Peptidase family M13 MADE_000001023365 PF05649 Peptidase family M13 MADE_000001023375 PF03880 DbpA RNA binding domain MADE_000001023375 PF00270 DEAD/DEAH box helicase MADE_000001023375 PF00271 Helicase conserved C-terminal domain MADE_000001023380 PF01979 Amidohydrolase family MADE_000001023385 PF08212 Lipocalin-like domain MADE_000001023390 PF00248 Aldo/keto reductase family MADE_000001023395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MADE_000001023400 PF00924 Mechanosensitive ion channel MADE_000001023400 PF05552 Conserved TM helix MADE_000001023405 PF07690 Major Facilitator Superfamily MADE_000001023410 PF00128 Alpha amylase, catalytic domain MADE_000001023420 PF01227 GTP cyclohydrolase I MADE_000001023430 PF04371 Porphyromonas-type peptidyl-arginine deiminase MADE_000001023435 PF00795 Carbon-nitrogen hydrolase MADE_000001023445 PF00271 Helicase conserved C-terminal domain MADE_000001023445 PF08494 DEAD/H associated MADE_000001023445 PF00270 DEAD/DEAH box helicase MADE_000001023455 PF04675 DNA ligase N terminus MADE_000001023455 PF01068 ATP dependent DNA ligase domain MADE_000001023455 PF04679 ATP dependent DNA ligase C terminal region MADE_000001023460 PF01132 Elongation factor P (EF-P) OB domain MADE_000001023460 PF08207 Elongation factor P (EF-P) KOW-like domain MADE_000001023460 PF09285 Elongation factor P, C-terminal MADE_000001023465 PF00294 pfkB family carbohydrate kinase MADE_000001023475 PF02310 B12 binding domain MADE_000001023475 PF02607 B12 binding domain MADE_000001023475 PF02965 Vitamin B12 dependent methionine synthase, activation domain MADE_000001023475 PF00809 Pterin binding enzyme MADE_000001023475 PF02574 Homocysteine S-methyltransferase MADE_000001023480 PF02798 Glutathione S-transferase, N-terminal domain MADE_000001023480 PF00043 Glutathione S-transferase, C-terminal domain MADE_000001023485 PF02798 Glutathione S-transferase, N-terminal domain MADE_000001023495 PF00561 alpha/beta hydrolase fold MADE_000001023510 PF00171 Aldehyde dehydrogenase family MADE_000001023515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MADE_000001023515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MADE_000001023515 PF00205 Thiamine pyrophosphate enzyme, central domain MADE_000001023525 PF00762 Ferrochelatase MADE_000001023530 PF03806 AbgT putative transporter family MADE_000001023535 PF01145 SPFH domain / Band 7 family MADE_000001023540 PF12221 Bacterial membrane protein N terminal MADE_000001023540 PF01145 SPFH domain / Band 7 family MADE_000001023545 PF16360 GTP-binding GTPase Middle Region MADE_000001023545 PF13167 GTP-binding GTPase N-terminal MADE_000001023545 PF01926 50S ribosome-binding GTPase MADE_000001023550 PF17209 Hfq protein MADE_000001023560 PF08676 MutL C terminal dimerisation domain MADE_000001023560 PF01119 DNA mismatch repair protein, C-terminal domain MADE_000001023565 PF01520 N-acetylmuramoyl-L-alanine amidase MADE_000001023570 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE MADE_000001023575 PF03853 YjeF-related protein N-terminus MADE_000001023575 PF01256 Carbohydrate kinase MADE_000001023580 PF08331 Domain of unknown function (DUF1730) MADE_000001023590 PF01208 Uroporphyrinogen decarboxylase (URO-D) MADE_000001023595 PF00293 NUDIX domain MADE_000001023595 PF09297 NADH pyrophosphatase zinc ribbon domain MADE_000001023600 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ MADE_000001023605 PF01475 Ferric uptake regulator family MADE_000001023615 PF01894 Uncharacterised protein family UPF0047 MADE_000001023620 PF00691 OmpA family MADE_000001023620 PF05736 OprF membrane domain MADE_000001023625 PF03796 DnaB-like helicase C terminal domain MADE_000001023625 PF00772 DnaB-like helicase N terminal domain MADE_000001023630 PF00722 Glycosyl hydrolases family 16 MADE_000001023635 PF07690 Major Facilitator Superfamily MADE_000001023640 PF04304 Protein of unknown function (DUF454) MADE_000001023650 PF07690 Major Facilitator Superfamily MADE_000001023690 PF01479 S4 domain MADE_000001023700 PF01078 Magnesium chelatase, subunit ChlI MADE_000001023700 PF13335 Magnesium chelatase, subunit ChlI C-terminal MADE_000001023710 PF00213 ATP synthase delta (OSCP) subunit MADE_1000015 PF02768 DNA polymerase III beta subunit, C-terminal domain MADE_1000015 PF02767 DNA polymerase III beta subunit, central domain MADE_1000015 PF00712 DNA polymerase III beta subunit, N-terminal domain MADE_1000020 PF02463 RecF/RecN/SMC N terminal domain MADE_1000025 PF00204 DNA gyrase B MADE_1000025 PF00986 DNA gyrase B subunit, carboxyl terminus MADE_1000025 PF01751 Toprim domain MADE_1000025 PF18053 DNA gyrase B subunit insert domain MADE_1000025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1000035 PF02092 Glycyl-tRNA synthetase beta subunit MADE_1000035 PF05746 DALR anticodon binding domain MADE_1000040 PF02091 Glycyl-tRNA synthetase alpha subunit MADE_1000045 PF03352 Methyladenine glycosylase MADE_1000055 PF04220 Der GTPase activator (YihI) MADE_1000065 PF00034 Cytochrome c MADE_1000070 PF01926 50S ribosome-binding GTPase MADE_1000075 PF01612 3'-5' exonuclease MADE_1000075 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MADE_1000075 PF01367 5'-3' exonuclease, C-terminal SAM fold MADE_1000075 PF00476 DNA polymerase family A MADE_1000085 PF02386 Cation transport protein MADE_1000090 PF02080 TrkA-C domain MADE_1000090 PF02254 TrkA-N domain MADE_1000095 PF01029 NusB family MADE_1000095 PF01189 16S rRNA methyltransferase RsmB/F MADE_1000100 PF00551 Formyl transferase MADE_1000100 PF02911 Formyl transferase, C-terminal domain MADE_1000105 PF01327 Polypeptide deformylase MADE_1000115 PF02481 DNA recombination-mediator protein A MADE_1000115 PF17782 DprA winged helix domain MADE_1000120 PF04361 Protein of unknown function (DUF494) MADE_1000130 PF01300 Telomere recombination MADE_1000135 PF01218 Coproporphyrinogen III oxidase MADE_1000140 PF03922 OmpW family MADE_1000150 PF08501 Shikimate dehydrogenase substrate binding domain MADE_1000150 PF01488 Shikimate / quinate 5-dehydrogenase MADE_1000150 PF18317 Shikimate 5'-dehydrogenase C-terminal domain MADE_1000155 PF00132 Bacterial transferase hexapeptide (six repeats) MADE_1000165 PF09411 Lipid A 3-O-deacylase (PagL) MADE_1000185 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MADE_1000185 PF01336 OB-fold nucleic acid binding domain MADE_1000185 PF02811 PHP domain MADE_1000185 PF07733 Bacterial DNA polymerase III alpha NTPase domain MADE_1000185 PF14579 Helix-hairpin-helix motif MADE_1000215 PF04389 Peptidase family M28 MADE_1000215 PF02225 PA domain MADE_1000220 PF00535 Glycosyl transferase family 2 MADE_1000225 PF00440 Bacterial regulatory proteins, tetR family MADE_1000230 PF02441 Flavoprotein MADE_1000230 PF04127 DNA / pantothenate metabolism flavoprotein MADE_1000235 PF04002 RadC-like JAB domain MADE_1000260 PF06082 Exopolysaccharide biosynthesis protein YbjH MADE_1000265 PF00830 Ribosomal L28 family MADE_1000270 PF00471 Ribosomal protein L33 MADE_1000280 PF06827 Zinc finger found in FPG and IleRS MADE_1000280 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain MADE_1000280 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain MADE_1000285 PF01467 Cytidylyltransferase-like MADE_1000295 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MADE_1000310 PF00563 EAL domain MADE_1000310 PF00990 Diguanylate cyclase, GGDEF domain MADE_1000310 PF03707 Bacterial signalling protein N terminal repeat MADE_1000315 PF00155 Aminotransferase class I and II MADE_1000320 PF08240 Alcohol dehydrogenase GroES-like domain MADE_1000320 PF00107 Zinc-binding dehydrogenase MADE_1000325 PF00581 Rhodanese-like domain MADE_1000330 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease MADE_1000330 PF01694 Rhomboid family MADE_1000340 PF04345 Chorismate lyase MADE_1000345 PF01040 UbiA prenyltransferase family MADE_1000360 PF04380 Membrane fusogenic activity MADE_1000365 PF13361 UvrD-like helicase C-terminal domain MADE_1000365 PF00580 UvrD/REP helicase N-terminal domain MADE_1000370 PF00990 Diguanylate cyclase, GGDEF domain MADE_1000370 PF03707 Bacterial signalling protein N terminal repeat MADE_1000370 PF00563 EAL domain MADE_1000375 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MADE_1000405 PF04143 Sulphur transport MADE_1000410 PF02082 Transcriptional regulator MADE_1000415 PF01925 Sulfite exporter TauE/SafE MADE_1000420 PF00753 Metallo-beta-lactamase superfamily MADE_1000430 PF07715 TonB-dependent Receptor Plug Domain MADE_1000430 PF00593 TonB dependent receptor MADE_1000445 PF00664 ABC transporter transmembrane region MADE_1000445 PF00005 ABC transporter MADE_1000450 PF00664 ABC transporter transmembrane region MADE_1000450 PF00005 ABC transporter MADE_1000460 PF01654 Cytochrome bd terminal oxidase subunit I MADE_1000465 PF00581 Rhodanese-like domain MADE_1000465 PF01206 Sulfurtransferase TusA MADE_1000470 PF00753 Metallo-beta-lactamase superfamily MADE_1000475 PF00578 AhpC/TSA family MADE_1000475 PF10417 C-terminal domain of 1-Cys peroxiredoxin MADE_1000485 PF00578 AhpC/TSA family MADE_1000505 PF00873 AcrB/AcrD/AcrF family MADE_1000515 PF02028 BCCT, betaine/carnitine/choline family transporter MADE_1000565 PF06470 SMC proteins Flexible Hinge Domain MADE_1000565 PF02463 RecF/RecN/SMC N terminal domain MADE_1000595 PF00266 Aminotransferase class-V MADE_1000630 PF13533 Biotin-lipoyl like MADE_1000635 PF00005 ABC transporter MADE_1000640 PF00005 ABC transporter MADE_1000650 PF07715 TonB-dependent Receptor Plug Domain MADE_1000650 PF00593 TonB dependent receptor MADE_1000660 PF02770 Acyl-CoA dehydrogenase, middle domain MADE_1000660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MADE_1000660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MADE_1000665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1000665 PF03466 LysR substrate binding domain MADE_1000670 PF00753 Metallo-beta-lactamase superfamily MADE_1000675 PF04317 YcjX-like family, DUF463 MADE_1000695 PF04055 Radical SAM superfamily MADE_1000695 PF06968 Biotin and Thiamin Synthesis associated domain MADE_1000700 PF05690 Thiazole biosynthesis protein ThiG MADE_1000710 PF00899 ThiF family MADE_1000715 PF02581 Thiamine monophosphate synthase MADE_1000720 PF01964 Radical SAM ThiC family MADE_1000720 PF13667 ThiC-associated domain MADE_1000725 PF07219 HemY protein N-terminus MADE_1000725 PF07719 Tetratricopeptide repeat MADE_1000730 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase MADE_1000735 PF02602 Uroporphyrinogen-III synthase HemD MADE_1000740 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MADE_1000740 PF03900 Porphobilinogen deaminase, C-terminal domain MADE_1000745 PF17151 Periplasmic sensor domain MADE_1000745 PF00990 Diguanylate cyclase, GGDEF domain MADE_1000760 PF00625 Guanylate kinase MADE_1000765 PF01192 RNA polymerase Rpb6 MADE_1000770 PF13291 ACT domain MADE_1000770 PF02824 TGS domain MADE_1000770 PF04607 Region found in RelA / SpoT proteins MADE_1000775 PF01042 Endoribonuclease L-PSP MADE_1000780 PF12105 SpoU, rRNA methylase, C-terminal MADE_1000780 PF00588 SpoU rRNA Methylase family MADE_1000785 PF00271 Helicase conserved C-terminal domain MADE_1000785 PF17191 RecG wedge domain MADE_1000785 PF00270 DEAD/DEAH box helicase MADE_1000790 PF04445 Putative SAM-dependent methyltransferase MADE_1000795 PF08534 Redoxin MADE_1000810 PF00528 Binding-protein-dependent transport system inner membrane component MADE_1000815 PF00005 ABC transporter MADE_1000815 PF08402 TOBE domain MADE_1000820 PF00924 Mechanosensitive ion channel MADE_1000820 PF05552 Conserved TM helix MADE_1000865 PF04940 Sensors of blue-light using FAD MADE_1000865 PF00563 EAL domain MADE_1000870 PF03466 LysR substrate binding domain MADE_1000870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1000875 PF01810 LysE type translocator MADE_1000880 PF00893 Small Multidrug Resistance protein MADE_1000895 PF00529 HlyD membrane-fusion protein of T1SS MADE_1000895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MADE_1000900 PF00873 AcrB/AcrD/AcrF family MADE_1000910 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain MADE_1000910 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain MADE_1000915 PF00850 Histone deacetylase domain MADE_1000930 PF12729 Four helix bundle sensory module for signal transduction MADE_1000930 PF00672 HAMP domain MADE_1000930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1000940 PF11737 Protein of unknown function (DUF3300) MADE_1000945 PF00925 GTP cyclohydrolase II MADE_1000950 PF00563 EAL domain MADE_1000950 PF08448 PAS fold MADE_1000950 PF00990 Diguanylate cyclase, GGDEF domain MADE_1000965 PF16124 RecQ zinc-binding MADE_1000965 PF09382 RQC domain MADE_1000965 PF00270 DEAD/DEAH box helicase MADE_1000965 PF00570 HRDC domain MADE_1000965 PF00271 Helicase conserved C-terminal domain MADE_1000970 PF03448 MgtE intracellular N domain MADE_1000970 PF01769 Divalent cation transporter MADE_1000970 PF00571 CBS domain MADE_1000975 PF00892 EamA-like transporter family MADE_1000980 PF00072 Response regulator receiver domain MADE_1000980 PF00990 Diguanylate cyclase, GGDEF domain MADE_1000985 PF13361 UvrD-like helicase C-terminal domain MADE_1000985 PF00580 UvrD/REP helicase N-terminal domain MADE_1000990 PF06426 Serine acetyltransferase, N-terminal MADE_1000990 PF00132 Bacterial transferase hexapeptide (six repeats) MADE_1000995 PF13419 Haloacid dehalogenase-like hydrolase MADE_1001010 PF01678 Diaminopimelate epimerase MADE_1001015 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MADE_1001015 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MADE_1001030 PF01569 PAP2 superfamily MADE_1001035 PF03737 Aldolase/RraA MADE_1001045 PF02441 Flavoprotein MADE_1001050 PF08245 Mur ligase middle domain MADE_1001050 PF02875 Mur ligase family, glutamate ligase domain MADE_1001050 PF01225 Mur ligase family, catalytic domain MADE_1001055 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain MADE_1001065 PF00719 Inorganic pyrophosphatase MADE_1001095 PF17760 UvrA interaction domain MADE_1001095 PF00005 ABC transporter MADE_1001095 PF17755 UvrA DNA-binding domain MADE_1001100 PF07690 Major Facilitator Superfamily MADE_1001105 PF13419 Haloacid dehalogenase-like hydrolase MADE_1001125 PF00356 Bacterial regulatory proteins, lacI family MADE_1001135 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain MADE_1001135 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain MADE_1001140 PF00288 GHMP kinases N terminal domain MADE_1001140 PF10509 Galactokinase galactose-binding signature MADE_1001140 PF08544 GHMP kinases C terminal MADE_1001145 PF00474 Sodium:solute symporter family MADE_1001150 PF00436 Single-strand binding protein family MADE_1001165 PF16363 GDP-mannose 4,6 dehydratase MADE_1001170 PF02836 Glycosyl hydrolases family 2, TIM barrel domain MADE_1001170 PF02837 Glycosyl hydrolases family 2, sugar binding domain MADE_1001170 PF00703 Glycosyl hydrolases family 2 MADE_1001170 PF16355 Domain of unknown function (DUF4982) MADE_1001170 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 MADE_1001185 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MADE_1001185 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MADE_1001190 PF08220 DeoR-like helix-turn-helix domain MADE_1001190 PF00455 DeoR C terminal sensor domain MADE_1001195 PF16901 C-terminal domain of alpha-glycerophosphate oxidase MADE_1001195 PF01266 FAD dependent oxidoreductase MADE_1001230 PF03958 Bacterial type II/III secretion system short domain MADE_1001230 PF00263 Bacterial type II and III secretion system protein MADE_1001235 PF13401 AAA domain MADE_1001235 PF01471 Putative peptidoglycan binding domain MADE_1001245 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain MADE_1001245 PF00437 Type II/IV secretion system protein MADE_1001250 PF00482 Type II secretion system (T2SS), protein F MADE_1001260 PF07963 Prokaryotic N-terminal methylation motif MADE_1001260 PF00114 Pilin (bacterial filament) MADE_1001265 PF07963 Prokaryotic N-terminal methylation motif MADE_1001265 PF08334 Type II secretion system (T2SS), protein G MADE_1001270 PF00114 Pilin (bacterial filament) MADE_1001270 PF07963 Prokaryotic N-terminal methylation motif MADE_1001300 PF04085 rod shape-determining protein MreC MADE_1001305 PF04093 rod shape-determining protein MreD MADE_1001310 PF02545 Maf-like protein MADE_1001315 PF10150 Ribonuclease E/G family MADE_1001315 PF00575 S1 RNA binding domain MADE_1001325 PF00795 Carbon-nitrogen hydrolase MADE_1001330 PF01523 Putative modulator of DNA gyrase MADE_1001335 PF04751 Protein of unknown function (DUF615) MADE_1001340 PF01523 Putative modulator of DNA gyrase MADE_1001350 PF16353 Domain of unknown function(DUF4981) MADE_1001350 PF00703 Glycosyl hydrolases family 2 MADE_1001350 PF02836 Glycosyl hydrolases family 2, TIM barrel domain MADE_1001350 PF02929 Beta galactosidase small chain MADE_1001350 PF02837 Glycosyl hydrolases family 2, sugar binding domain MADE_1001355 PF00486 Transcriptional regulatory protein, C terminal MADE_1001355 PF00072 Response regulator receiver domain MADE_1001360 PF00497 Bacterial extracellular solute-binding proteins, family 3 MADE_1001360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1001360 PF00512 His Kinase A (phospho-acceptor) domain MADE_1001365 PF08323 Starch synthase catalytic domain MADE_1001365 PF00534 Glycosyl transferases group 1 MADE_1001370 PF08468 Methyltransferase small domain N-terminal MADE_1001370 PF05175 Methyltransferase small domain MADE_1001375 PF02390 Putative methyltransferase MADE_1001380 PF00561 alpha/beta hydrolase fold MADE_1001385 PF00730 HhH-GPD superfamily base excision DNA repair protein MADE_1001385 PF00633 Helix-hairpin-helix motif MADE_1001385 PF14815 NUDIX domain MADE_1001390 PF04362 Bacterial Fe(2+) trafficking MADE_1001405 PF00145 C-5 cytosine-specific DNA methylase MADE_1001415 PF01396 Topoisomerase DNA binding C4 zinc finger MADE_1001415 PF01131 DNA topoisomerase MADE_1001415 PF01751 Toprim domain MADE_1001445 PF02899 Phage integrase, N-terminal SAM-like domain MADE_1001445 PF00589 Phage integrase family MADE_1001465 PF02481 DNA recombination-mediator protein A MADE_1001465 PF18255 DNA processing protein A sterile alpha motif domain MADE_1001490 PF00873 AcrB/AcrD/AcrF family MADE_1001505 PF01435 Peptidase family M48 MADE_1001525 PF02911 Formyl transferase, C-terminal domain MADE_1001525 PF00551 Formyl transferase MADE_1001530 PF00512 His Kinase A (phospho-acceptor) domain MADE_1001530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1001530 PF00672 HAMP domain MADE_1001535 PF00486 Transcriptional regulatory protein, C terminal MADE_1001535 PF00072 Response regulator receiver domain MADE_1001550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MADE_1001555 PF00873 AcrB/AcrD/AcrF family MADE_1001605 PF08031 Berberine and berberine like MADE_1001605 PF01565 FAD binding domain MADE_1001640 PF00175 Oxidoreductase NAD-binding domain MADE_1001640 PF00970 Oxidoreductase FAD-binding domain MADE_1001640 PF00042 Globin MADE_1001660 PF01750 Hydrogenase maturation protease MADE_1001670 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MADE_1001670 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal MADE_1001675 PF00374 Nickel-dependent hydrogenase MADE_1001685 PF01455 HupF/HypC family MADE_1001690 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA MADE_1001695 PF02492 CobW/HypB/UreG, nucleotide-binding domain MADE_1001700 PF01924 Hydrogenase formation hypA family MADE_1001705 PF07503 HypF finger MADE_1001705 PF01300 Telomere recombination MADE_1001705 PF17788 HypF Kae1-like domain MADE_1001705 PF00708 Acylphosphatase MADE_1001710 PF02769 AIR synthase related protein, C-terminal domain MADE_1001710 PF00586 AIR synthase related protein, N-terminal domain MADE_1001715 PF09278 MerR, DNA binding MADE_1001715 PF00376 MerR family regulatory protein MADE_1001720 PF00403 Heavy-metal-associated domain MADE_1001810 PF00529 HlyD membrane-fusion protein of T1SS MADE_1001810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MADE_1001815 PF00873 AcrB/AcrD/AcrF family MADE_1001820 PF16916 Dimerisation domain of Zinc Transporter MADE_1001820 PF01545 Cation efflux family MADE_1001830 PF01219 Prokaryotic diacylglycerol kinase MADE_1001845 PF03050 Transposase IS66 family MADE_1001845 PF13817 IS66 C-terminal element MADE_1001845 PF13007 Transposase C of IS166 homeodomain MADE_1001845 PF13005 zinc-finger binding domain of transposase IS66 MADE_1001850 PF00884 Sulfatase MADE_1001850 PF08019 Phosphoethanolamine transferase EptA/EptB MADE_1001855 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase MADE_1001865 PF00535 Glycosyl transferase family 2 MADE_1001870 PF00486 Transcriptional regulatory protein, C terminal MADE_1001870 PF00072 Response regulator receiver domain MADE_1001875 PF00672 HAMP domain MADE_1001875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1001875 PF00512 His Kinase A (phospho-acceptor) domain MADE_1001905 PF02911 Formyl transferase, C-terminal domain MADE_1001905 PF00551 Formyl transferase MADE_1001915 PF00376 MerR family regulatory protein MADE_1001915 PF09278 MerR, DNA binding MADE_1001920 PF00403 Heavy-metal-associated domain MADE_1001960 PF13520 Amino acid permease MADE_1001970 PF07732 Multicopper oxidase MADE_1001970 PF00394 Multicopper oxidase MADE_1001970 PF07731 Multicopper oxidase MADE_1001995 PF17200 Single Cache domain 2 MADE_1001995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1001995 PF00672 HAMP domain MADE_1002000 PF00072 Response regulator receiver domain MADE_1002005 PF01627 Hpt domain MADE_1002005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1002005 PF02895 Signal transducing histidine kinase, homodimeric domain MADE_1002005 PF09078 CheY binding MADE_1002005 PF01584 CheW-like domain MADE_1002010 PF01584 CheW-like domain MADE_1002015 PF03975 CheD chemotactic sensory transduction MADE_1002020 PF01339 CheB methylesterase MADE_1002020 PF00072 Response regulator receiver domain MADE_1002040 PF01348 Type II intron maturase MADE_1002040 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MADE_1002060 PF13419 Haloacid dehalogenase-like hydrolase MADE_1002070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1002070 PF00072 Response regulator receiver domain MADE_1002070 PF13426 PAS domain MADE_1002070 PF00512 His Kinase A (phospho-acceptor) domain MADE_1002070 PF08448 PAS fold MADE_1002085 PF00356 Bacterial regulatory proteins, lacI family MADE_1002090 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MADE_1002090 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MADE_1002100 PF03825 Nucleoside H+ symporter MADE_1002105 PF01261 Xylose isomerase-like TIM barrel MADE_1002110 PF05199 GMC oxidoreductase MADE_1002110 PF00732 GMC oxidoreductase MADE_1002125 PF00465 Iron-containing alcohol dehydrogenase MADE_1002225 PF01063 Amino-transferase class IV MADE_1002230 PF00300 Histidine phosphatase superfamily (branch 1) MADE_1002240 PF00694 Aconitase C-terminal domain MADE_1002240 PF00330 Aconitase family (aconitate hydratase) MADE_1002250 PF00437 Type II/IV secretion system protein MADE_1002255 PF00338 Ribosomal protein S10p/S20e MADE_1002260 PF00297 Ribosomal protein L3 MADE_1002265 PF00573 Ribosomal protein L4/L1 family MADE_1002270 PF00276 Ribosomal protein L23 MADE_1002275 PF03947 Ribosomal Proteins L2, C-terminal domain MADE_1002275 PF00181 Ribosomal Proteins L2, RNA binding domain MADE_1002280 PF00203 Ribosomal protein S19 MADE_1002285 PF00237 Ribosomal protein L22p/L17e MADE_1002290 PF00189 Ribosomal protein S3, C-terminal domain MADE_1002290 PF07650 KH domain MADE_1002295 PF00252 Ribosomal protein L16p/L10e MADE_1002300 PF00831 Ribosomal L29 protein MADE_1002305 PF00366 Ribosomal protein S17 MADE_1002320 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MADE_1002325 PF13439 Glycosyltransferase Family 4 MADE_1002325 PF00534 Glycosyl transferases group 1 MADE_1002335 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) MADE_1002335 PF00534 Glycosyl transferases group 1 MADE_1002355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1002355 PF02743 Cache domain MADE_1002355 PF00672 HAMP domain MADE_1002360 PF01432 Peptidase family M3 MADE_1002370 PF00551 Formyl transferase MADE_1002370 PF01842 ACT domain MADE_1002380 PF00271 Helicase conserved C-terminal domain MADE_1002380 PF04408 Helicase associated domain (HA2) MADE_1002380 PF00270 DEAD/DEAH box helicase MADE_1002380 PF08482 ATP-dependent helicase C-terminal MADE_1002385 PF13406 Transglycosylase SLT domain MADE_1002390 PF14814 Bifunctional transglycosylase second domain MADE_1002390 PF00905 Penicillin binding protein transpeptidase domain MADE_1002390 PF00912 Transglycosylase MADE_1002405 PF05661 Protein of unknown function (DUF808) MADE_1002410 PF12833 Helix-turn-helix domain MADE_1002420 PF00543 Nitrogen regulatory protein P-II MADE_1002425 PF00909 Ammonium Transporter Family MADE_1002435 PF04261 Dyp-type peroxidase family MADE_1002440 PF00211 Adenylate and Guanylate cyclase catalytic domain MADE_1002440 PF00672 HAMP domain MADE_1002445 PF00202 Aminotransferase class-III MADE_1002450 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MADE_1002450 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MADE_1002465 PF00873 AcrB/AcrD/AcrF family MADE_1002475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1002475 PF01627 Hpt domain MADE_1002475 PF00072 Response regulator receiver domain MADE_1002475 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MADE_1002475 PF00672 HAMP domain MADE_1002475 PF00512 His Kinase A (phospho-acceptor) domain MADE_1002480 PF03989 DNA gyrase C-terminal domain, beta-propeller MADE_1002480 PF00521 DNA gyrase/topoisomerase IV, subunit A MADE_1002490 PF13188 PAS domain MADE_1002490 PF03707 Bacterial signalling protein N terminal repeat MADE_1002490 PF00990 Diguanylate cyclase, GGDEF domain MADE_1002490 PF00563 EAL domain MADE_1002500 PF00171 Aldehyde dehydrogenase family MADE_1002505 PF04958 Arginine N-succinyltransferase beta subunit MADE_1002510 PF00202 Aminotransferase class-III MADE_1002520 PF00117 Glutamine amidotransferase class-I MADE_1002525 PF00579 tRNA synthetases class I (W and Y) MADE_1002530 PF00834 Ribulose-phosphate 3 epimerase family MADE_1002550 PF02086 D12 class N6 adenine-specific DNA methyltransferase MADE_1002560 PF01761 3-dehydroquinate synthase MADE_1002565 PF01202 Shikimate kinase MADE_1002570 PF07660 Secretin and TonB N terminus short domain MADE_1002570 PF11741 AMIN domain MADE_1002570 PF03958 Bacterial type II/III secretion system short domain MADE_1002570 PF00263 Bacterial type II and III secretion system protein MADE_1002595 PF00912 Transglycosylase MADE_1002595 PF00905 Penicillin binding protein transpeptidase domain MADE_1002595 PF17092 Penicillin-binding protein OB-like domain MADE_1002600 PF03949 Malic enzyme, NAD binding domain MADE_1002600 PF00390 Malic enzyme, N-terminal domain MADE_1002610 PF02798 Glutathione S-transferase, N-terminal domain MADE_1002620 PF00199 Catalase MADE_1002620 PF06628 Catalase-related immune-responsive MADE_1002640 PF00583 Acetyltransferase (GNAT) family MADE_1002640 PF00696 Amino acid kinase family MADE_1002645 PF14698 Argininosuccinate lyase C-terminal MADE_1002645 PF00206 Lyase MADE_1002650 PF00764 Arginosuccinate synthase MADE_1002655 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MADE_1002655 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MADE_1002660 PF00696 Amino acid kinase family MADE_1002665 PF02774 Semialdehyde dehydrogenase, dimerisation domain MADE_1002665 PF01118 Semialdehyde dehydrogenase, NAD binding domain MADE_1002670 PF02142 MGS-like domain MADE_1002680 PF00486 Transcriptional regulatory protein, C terminal MADE_1002680 PF00072 Response regulator receiver domain MADE_1002685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1002685 PF00512 His Kinase A (phospho-acceptor) domain MADE_1002685 PF00672 HAMP domain MADE_1002685 PF16527 Two-component sensor protein CpxA, periplasmic domain MADE_1002690 PF12146 Serine aminopeptidase, S33 MADE_1002695 PF00588 SpoU rRNA Methylase family MADE_1002705 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus MADE_1002705 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MADE_1002710 PF02556 Preprotein translocase subunit SecB MADE_1002715 PF00462 Glutaredoxin MADE_1002720 PF00581 Rhodanese-like domain MADE_1002725 PF01551 Peptidase family M23 MADE_1002730 PF04748 Divergent polysaccharide deacetylase MADE_1002750 PF02666 Phosphatidylserine decarboxylase MADE_1002755 PF03193 RsgA GTPase MADE_1002760 PF00929 Exonuclease MADE_1002775 PF07715 TonB-dependent Receptor Plug Domain MADE_1002775 PF00593 TonB dependent receptor MADE_1002790 PF00205 Thiamine pyrophosphate enzyme, central domain MADE_1002790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MADE_1002790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MADE_1002795 PF10369 Small subunit of acetolactate synthase MADE_1002810 PF02416 mttA/Hcf106 family MADE_1002815 PF02416 mttA/Hcf106 family MADE_1002820 PF00902 Sec-independent protein translocase protein (TatC) MADE_1002830 PF01026 TatD related DNase MADE_1002835 PF00360 Phytochrome region MADE_1002835 PF00563 EAL domain MADE_1002835 PF00990 Diguanylate cyclase, GGDEF domain MADE_1002835 PF01590 GAF domain MADE_1002840 PF00490 Delta-aminolevulinic acid dehydratase MADE_1002845 PF02541 Ppx/GppA phosphatase family MADE_1002850 PF00271 Helicase conserved C-terminal domain MADE_1002850 PF00270 DEAD/DEAH box helicase MADE_1002855 PF00085 Thioredoxin MADE_1002860 PF07498 Rho termination factor, N-terminal domain MADE_1002860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MADE_1002860 PF07497 Rho termination factor, RNA-binding domain MADE_1002870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1002870 PF00512 His Kinase A (phospho-acceptor) domain MADE_1002870 PF00072 Response regulator receiver domain MADE_1002870 PF09308 LuxQ, periplasmic MADE_1002875 PF06965 Na+/H+ antiporter 1 MADE_1002880 PF00731 AIR carboxylase MADE_1002885 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain MADE_1002885 PF02222 ATP-grasp domain MADE_1002895 PF00210 Ferritin-like domain MADE_1002900 PF07995 Glucose / Sorbosone dehydrogenase MADE_1002905 PF00326 Prolyl oligopeptidase family MADE_1002905 PF07676 WD40-like Beta Propeller Repeat MADE_1002915 PF00085 Thioredoxin MADE_1002930 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) MADE_1002935 PF00709 Adenylosuccinate synthetase MADE_1002940 PF00171 Aldehyde dehydrogenase family MADE_1002960 PF03553 Na+/H+ antiporter family MADE_1002965 PF00933 Glycosyl hydrolase family 3 N terminal domain MADE_1002975 PF07075 Protein of unknown function (DUF1343) MADE_1002980 PF01380 SIS domain MADE_1002985 PF01168 Alanine racemase, N-terminal domain MADE_1002985 PF00842 Alanine racemase, C-terminal domain MADE_1002990 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MADE_1003025 PF08274 PhnA Zinc-Ribbon MADE_1003025 PF03831 PhnA domain MADE_1003030 PF00583 Acetyltransferase (GNAT) family MADE_1003060 PF01381 Helix-turn-helix MADE_1003065 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB MADE_1003075 PF05016 ParE toxin of type II toxin-antitoxin system, parDE MADE_1003120 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH MADE_1003165 PF01548 Transposase MADE_1003165 PF02371 Transposase IS116/IS110/IS902 family MADE_1003235 PF01527 Transposase MADE_1003240 PF13276 HTH-like domain MADE_1003240 PF00665 Integrase core domain MADE_1003240 PF13333 Integrase core domain MADE_1003265 PF01548 Transposase MADE_1003265 PF02371 Transposase IS116/IS110/IS902 family MADE_1003300 PF13495 Phage integrase, N-terminal SAM-like domain MADE_1003300 PF00589 Phage integrase family MADE_1003305 PF00108 Thiolase, N-terminal domain MADE_1003305 PF02803 Thiolase, C-terminal domain MADE_1003310 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MADE_1003310 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MADE_1003310 PF00378 Enoyl-CoA hydratase/isomerase MADE_1003315 PF14718 Soluble lytic murein transglycosylase L domain MADE_1003315 PF01464 Transglycosylase SLT domain MADE_1003320 PF00557 Metallopeptidase family M24 MADE_1003330 PF00348 Polyprenyl synthetase MADE_1003335 PF00829 Ribosomal prokaryotic L21 protein MADE_1003340 PF01016 Ribosomal L27 protein MADE_1003345 PF01926 50S ribosome-binding GTPase MADE_1003345 PF01018 GTP1/OBG MADE_1003350 PF00186 Dihydrofolate reductase MADE_1003355 PF04542 Sigma-70 region 2 MADE_1003355 PF04545 Sigma-70, region 4 MADE_1003355 PF04539 Sigma-70 region 3 MADE_1003355 PF00140 Sigma-70 factor, region 1.2 MADE_1003360 PF01551 Peptidase family M23 MADE_1003360 PF01476 LysM domain MADE_1003365 PF09335 SNARE associated Golgi protein MADE_1003375 PF01142 tRNA pseudouridine synthase D (TruD) MADE_1003380 PF02542 YgbB family MADE_1003385 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MADE_1003390 PF04977 Septum formation initiator MADE_1003400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1003400 PF17200 Single Cache domain 2 MADE_1003400 PF00672 HAMP domain MADE_1003410 PF00171 Aldehyde dehydrogenase family MADE_1003410 PF01619 Proline dehydrogenase MADE_1003410 PF14850 DNA-binding domain of Proline dehydrogenase MADE_1003410 PF18327 Proline utilization A proline dehydrogenase N-terminal domain MADE_1003435 PF02976 DNA mismatch repair enzyme MutH MADE_1003440 PF00293 NUDIX domain MADE_1003445 PF01590 GAF domain MADE_1003445 PF05524 PEP-utilising enzyme, N-terminal MADE_1003445 PF02896 PEP-utilising enzyme, TIM barrel domain MADE_1003445 PF00391 PEP-utilising enzyme, mobile domain MADE_1003450 PF01925 Sulfite exporter TauE/SafE MADE_1003455 PF01790 Prolipoprotein diacylglyceryl transferase MADE_1003460 PF00303 Thymidylate synthase MADE_1003465 PF00072 Response regulator receiver domain MADE_1003470 PF00072 Response regulator receiver domain MADE_1003470 PF00990 Diguanylate cyclase, GGDEF domain MADE_1003475 PF07690 Major Facilitator Superfamily MADE_1003490 PF00849 RNA pseudouridylate synthase MADE_1003495 PF00271 Helicase conserved C-terminal domain MADE_1003495 PF12137 RNA polymerase recycling family C-terminal MADE_1003495 PF18337 RapA N-terminal Tudor like domain MADE_1003495 PF18339 RapA N-terminal Tudor like domain 1 MADE_1003495 PF00176 SNF2 family N-terminal domain MADE_1003510 PF02562 PhoH-like protein MADE_1003510 PF13638 PIN domain MADE_1003520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MADE_1003520 PF10414 Sirohaem synthase dimerisation region MADE_1003525 PF03880 DbpA RNA binding domain MADE_1003525 PF00270 DEAD/DEAH box helicase MADE_1003525 PF00271 Helicase conserved C-terminal domain MADE_1003525 PF12343 Cold shock protein DEAD box A MADE_1003545 PF02321 Outer membrane efflux protein MADE_1003550 PF00293 NUDIX domain MADE_1003560 PF00149 Calcineurin-like phosphoesterase MADE_1003565 PF05728 Uncharacterised protein family (UPF0227) MADE_1003570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1003570 PF00986 DNA gyrase B subunit, carboxyl terminus MADE_1003570 PF01751 Toprim domain MADE_1003570 PF00204 DNA gyrase B MADE_1003580 PF13419 Haloacid dehalogenase-like hydrolase MADE_1003605 PF04055 Radical SAM superfamily MADE_1003615 PF00152 tRNA synthetases class II (D, K and N) MADE_1003620 PF00593 TonB dependent receptor MADE_1003620 PF07715 TonB-dependent Receptor Plug Domain MADE_1003630 PF13302 Acetyltransferase (GNAT) domain MADE_1003635 PF07660 Secretin and TonB N terminus short domain MADE_1003635 PF00593 TonB dependent receptor MADE_1003635 PF07715 TonB-dependent Receptor Plug Domain MADE_1003645 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MADE_1003650 PF05175 Methyltransferase small domain MADE_1003660 PF01722 BolA-like protein MADE_1003665 PF01569 PAP2 superfamily MADE_1003675 PF03861 ANTAR domain MADE_1003675 PF08376 Nitrate and nitrite sensing MADE_1003690 PF01740 STAS domain MADE_1003690 PF00916 Sulfate permease family MADE_1003695 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_1003695 PF18267 Rubredoxin NAD+ reductase C-terminal domain MADE_1003695 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MADE_1003695 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MADE_1003695 PF04324 BFD-like [2Fe-2S] binding domain MADE_1003705 PF00384 Molybdopterin oxidoreductase MADE_1003705 PF01568 Molydopterin dinucleotide binding domain MADE_1003705 PF04324 BFD-like [2Fe-2S] binding domain MADE_1003705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MADE_1003710 PF14824 Sirohaem biosynthesis protein central MADE_1003710 PF10414 Sirohaem synthase dimerisation region MADE_1003710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MADE_1003715 PF00591 Glycosyl transferase family, a/b domain MADE_1003715 PF02885 Glycosyl transferase family, helical bundle domain MADE_1003720 PF13426 PAS domain MADE_1003720 PF08447 PAS fold MADE_1003720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1003725 PF00005 ABC transporter MADE_1003730 PF00528 Binding-protein-dependent transport system inner membrane component MADE_1003735 PF00005 ABC transporter MADE_1003750 PF01323 DSBA-like thioredoxin domain MADE_1003755 PF07715 TonB-dependent Receptor Plug Domain MADE_1003755 PF00593 TonB dependent receptor MADE_1003760 PF01636 Phosphotransferase enzyme family MADE_1003780 PF01165 Ribosomal protein S21 MADE_1003785 PF00814 Glycoprotease family MADE_1003795 PF02660 Glycerol-3-phosphate acyltransferase MADE_1003800 PF02152 Dihydroneopterin aldolase MADE_1003810 PF02673 Bacitracin resistance protein BacA MADE_1003815 PF01230 HIT domain MADE_1003830 PF03594 Benzoate membrane transport protein MADE_1003835 PF07883 Cupin domain MADE_1003835 PF01381 Helix-turn-helix MADE_1003840 PF04381 Putative exonuclease, RdgC MADE_1003845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1003845 PF00497 Bacterial extracellular solute-binding proteins, family 3 MADE_1003845 PF00512 His Kinase A (phospho-acceptor) domain MADE_1003850 PF00486 Transcriptional regulatory protein, C terminal MADE_1003850 PF00072 Response regulator receiver domain MADE_1003855 PF11808 Phosphate regulon sensor protein PhoR MADE_1003855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1003855 PF00989 PAS fold MADE_1003855 PF00512 His Kinase A (phospho-acceptor) domain MADE_1003860 PF12849 PBP superfamily domain MADE_1003880 PF01618 MotA/TolQ/ExbB proton channel family MADE_1003885 PF01618 MotA/TolQ/ExbB proton channel family MADE_1003890 PF02472 Biopolymer transport protein ExbD/TolR MADE_1003895 PF03544 Gram-negative bacterial TonB protein C-terminal MADE_1003905 PF00072 Response regulator receiver domain MADE_1003910 PF00072 Response regulator receiver domain MADE_1003910 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MADE_1003910 PF00672 HAMP domain MADE_1003910 PF01627 Hpt domain MADE_1003910 PF00512 His Kinase A (phospho-acceptor) domain MADE_1003910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1003915 PF00501 AMP-binding enzyme MADE_1003915 PF13193 AMP-binding enzyme C-terminal domain MADE_1003925 PF07995 Glucose / Sorbosone dehydrogenase MADE_1003930 PF06434 Aconitate hydratase 2 N-terminus MADE_1003930 PF11791 Aconitate B N-terminal domain MADE_1003930 PF00330 Aconitase family (aconitate hydratase) MADE_1003935 PF01048 Phosphorylase superfamily MADE_1003950 PF00330 Aconitase family (aconitate hydratase) MADE_1003950 PF11791 Aconitate B N-terminal domain MADE_1003950 PF06434 Aconitate hydratase 2 N-terminus MADE_1003960 PF00696 Amino acid kinase family MADE_1003960 PF01842 ACT domain MADE_1003965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1003965 PF00672 HAMP domain MADE_1003970 PF00149 Calcineurin-like phosphoesterase MADE_1003975 PF04379 ApaG domain MADE_1003980 PF00398 Ribosomal RNA adenine dimethylase MADE_1003985 PF04166 Pyridoxal phosphate biosynthetic protein PdxA MADE_1003990 PF09312 SurA N-terminal domain MADE_1003990 PF00639 PPIC-type PPIASE domain MADE_1003995 PF03968 OstA-like protein MADE_1003995 PF04453 LPS transport system D MADE_1004000 PF00226 DnaJ domain MADE_1004000 PF05099 Tellurite resistance protein TerB MADE_1004005 PF00589 Phage integrase family MADE_1004005 PF02899 Phage integrase, N-terminal SAM-like domain MADE_1004010 PF10411 Disulfide bond isomerase protein N-terminus MADE_1004010 PF13098 Thioredoxin-like domain MADE_1004015 PF01368 DHH family MADE_1004015 PF17768 RecJ OB domain MADE_1004015 PF02272 DHHA1 domain MADE_1004025 PF02565 Recombination protein O C terminal MADE_1004025 PF11967 Recombination protein O N terminal MADE_1004030 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ MADE_1004035 PF01648 4'-phosphopantetheinyl transferase superfamily MADE_1004040 PF05958 tRNA (Uracil-5-)-methyltransferase MADE_1004045 PF04607 Region found in RelA / SpoT proteins MADE_1004045 PF13291 ACT domain MADE_1004045 PF02824 TGS domain MADE_1004050 PF03819 MazG nucleotide pyrophosphohydrolase domain MADE_1004085 PF13193 AMP-binding enzyme C-terminal domain MADE_1004085 PF00501 AMP-binding enzyme MADE_1004095 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase MADE_1004105 PF00535 Glycosyl transferase family 2 MADE_1004125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1004125 PF00512 His Kinase A (phospho-acceptor) domain MADE_1004125 PF08521 Two-component sensor kinase N-terminal MADE_1004130 PF00072 Response regulator receiver domain MADE_1004130 PF00486 Transcriptional regulatory protein, C terminal MADE_1004135 PF00572 Ribosomal protein L13 MADE_1004140 PF00380 Ribosomal protein S9/S16 MADE_1004145 PF02167 Cytochrome C1 family MADE_1004150 PF00043 Glutathione S-transferase, C-terminal domain MADE_1004150 PF02798 Glutathione S-transferase, N-terminal domain MADE_1004155 PF04386 Stringent starvation protein B MADE_1004160 PF03448 MgtE intracellular N domain MADE_1004160 PF01769 Divalent cation transporter MADE_1004160 PF00571 CBS domain MADE_1004165 PF00381 PTS HPr component phosphorylation site MADE_1004170 PF03668 P-loop ATPase protein family MADE_1004175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MADE_1004180 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MADE_1004185 PF04552 Sigma-54, DNA binding domain MADE_1004185 PF04963 Sigma-54 factor, core binding domain MADE_1004185 PF00309 Sigma-54 factor, Activator interacting domain (AID) MADE_1004190 PF12399 Branched-chain amino acid ATP-binding cassette transporter MADE_1004190 PF00005 ABC transporter MADE_1004195 PF03968 OstA-like protein MADE_1004210 PF01380 SIS domain MADE_1004210 PF00571 CBS domain MADE_1004215 PF01699 Sodium/calcium exchanger protein MADE_1004220 PF00005 ABC transporter MADE_1004225 PF02405 Permease MlaE MADE_1004230 PF02470 MlaD protein MADE_1004235 PF05494 MlaC protein MADE_1004245 PF01722 BolA-like protein MADE_1004250 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MADE_1004255 PF13180 PDZ domain MADE_1004260 PF13180 PDZ domain MADE_1004260 PF00595 PDZ domain MADE_1004270 PF03969 AFG1-like ATPase MADE_1004275 PF01709 Transcriptional regulator MADE_1004295 PF02355 Protein export membrane protein MADE_1004295 PF07549 SecD/SecF GG Motif MADE_1004300 PF02080 TrkA-C domain MADE_1004300 PF00999 Sodium/hydrogen exchanger family MADE_1004300 PF03471 Transporter associated domain MADE_1004305 PF00593 TonB dependent receptor MADE_1004305 PF07715 TonB-dependent Receptor Plug Domain MADE_1004310 PF00892 EamA-like transporter family MADE_1004320 PF09308 LuxQ, periplasmic MADE_1004320 PF00072 Response regulator receiver domain MADE_1004320 PF00512 His Kinase A (phospho-acceptor) domain MADE_1004320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1004325 PF13458 Periplasmic binding protein MADE_1004340 PF00438 S-adenosylmethionine synthetase, N-terminal domain MADE_1004340 PF02773 S-adenosylmethionine synthetase, C-terminal domain MADE_1004340 PF02772 S-adenosylmethionine synthetase, central domain MADE_1004345 PF02779 Transketolase, pyrimidine binding domain MADE_1004345 PF00456 Transketolase, thiamine diphosphate binding domain MADE_1004345 PF02780 Transketolase, C-terminal domain MADE_1004350 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MADE_1004350 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MADE_1004355 PF00162 Phosphoglycerate kinase MADE_1004360 PF00274 Fructose-bisphosphate aldolase class-I MADE_1004370 PF07676 WD40-like Beta Propeller Repeat MADE_1004370 PF00326 Prolyl oligopeptidase family MADE_1004375 PF02541 Ppx/GppA phosphatase family MADE_1004380 PF13089 Polyphosphate kinase N-terminal domain MADE_1004380 PF17941 Polyphosphate kinase C-terminal domain 1 MADE_1004380 PF13090 Polyphosphate kinase C-terminal domain 2 MADE_1004380 PF02503 Polyphosphate kinase middle domain MADE_1004390 PF00528 Binding-protein-dependent transport system inner membrane component MADE_1004395 PF00528 Binding-protein-dependent transport system inner membrane component MADE_1004400 PF00005 ABC transporter MADE_1004405 PF01895 PhoU domain MADE_1004410 PF01384 Phosphate transporter family MADE_1004420 PF03466 LysR substrate binding domain MADE_1004420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1004430 PF03006 Haemolysin-III related MADE_1004435 PF01047 MarR family MADE_1004440 PF02566 OsmC-like protein MADE_1004445 PF01433 Peptidase family M1 domain MADE_1004455 PF09186 Domain of unknown function (DUF1949) MADE_1004455 PF01205 Uncharacterized protein family UPF0029 MADE_1004465 PF00149 Calcineurin-like phosphoesterase MADE_1004465 PF12320 Type 5 capsule protein repressor C-terminal domain MADE_1004470 PF13476 AAA domain MADE_1004485 PF00375 Sodium:dicarboxylate symporter family MADE_1004490 PF00491 Arginase family MADE_1004495 PF01979 Amidohydrolase family MADE_1004500 PF00392 Bacterial regulatory proteins, gntR family MADE_1004500 PF07702 UTRA domain MADE_1004505 PF01175 Urocanase Rossmann-like domain MADE_1004505 PF17392 Urocanase C-terminal domain MADE_1004505 PF17391 Urocanase N-terminal domain MADE_1004510 PF00221 Aromatic amino acid lyase MADE_1004540 PF12848 ABC transporter MADE_1004540 PF00005 ABC transporter MADE_1004565 PF00924 Mechanosensitive ion channel MADE_1004625 PF04172 LrgB-like family MADE_1004630 PF00072 Response regulator receiver domain MADE_1004655 PF06969 HemN C-terminal domain MADE_1004655 PF04055 Radical SAM superfamily MADE_1004660 PF01725 Ham1 family MADE_1004665 PF00270 DEAD/DEAH box helicase MADE_1004665 PF00271 Helicase conserved C-terminal domain MADE_1004670 PF12627 Probable RNA and SrmB- binding site of polymerase A MADE_1004670 PF01743 Poly A polymerase head domain MADE_1004675 PF13401 AAA domain MADE_1004675 PF01471 Putative peptidoglycan binding domain MADE_1004685 PF01966 HD domain MADE_1004685 PF11871 Domain of unknown function (DUF3391) MADE_1004690 PF00694 Aconitase C-terminal domain MADE_1004695 PF00330 Aconitase family (aconitate hydratase) MADE_1004700 PF00180 Isocitrate/isopropylmalate dehydrogenase MADE_1004705 PF08502 LeuA allosteric (dimerisation) domain MADE_1004705 PF00682 HMGL-like MADE_1004715 PF00113 Enolase, C-terminal TIM barrel domain MADE_1004715 PF03952 Enolase, N-terminal domain MADE_1004720 PF00117 Glutamine amidotransferase class-I MADE_1004720 PF06418 CTP synthase N-terminus MADE_1004725 PF01624 MutS domain I MADE_1004725 PF05188 MutS domain II MADE_1004725 PF05192 MutS domain III MADE_1004725 PF05190 MutS family domain IV MADE_1004725 PF00488 MutS domain V MADE_1004730 PF02464 Competence-damaged protein MADE_1004735 PF00154 recA bacterial DNA recombination protein MADE_1004740 PF00005 ABC transporter MADE_1004745 PF12679 ABC-2 family transporter protein MADE_1004760 PF00005 ABC transporter MADE_1004765 PF03379 CcmB protein MADE_1004770 PF01578 Cytochrome C assembly protein MADE_1004775 PF04995 Heme exporter protein D (CcmD) MADE_1004780 PF03100 CcmE MADE_1004785 PF01578 Cytochrome C assembly protein MADE_1004785 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal MADE_1004790 PF08534 Redoxin MADE_1004795 PF03918 Cytochrome C biogenesis protein MADE_1004805 PF04333 MlaA lipoprotein MADE_1004810 PF16363 GDP-mannose 4,6 dehydratase MADE_1004820 PF00854 POT family MADE_1004830 PF00005 ABC transporter MADE_1004840 PF02563 Polysaccharide biosynthesis/export protein MADE_1004840 PF10531 SLBB domain MADE_1004850 PF00953 Glycosyl transferase family 4 MADE_1004865 PF00483 Nucleotidyl transferase MADE_1004870 PF10531 SLBB domain MADE_1004875 PF00180 Isocitrate/isopropylmalate dehydrogenase MADE_1004875 PF18324 Hypothetical protein TT1725 MADE_1004890 PF11892 Domain of unknown function (DUF3412) MADE_1004890 PF03641 Possible lysine decarboxylase MADE_1004890 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases MADE_1004895 PF00990 Diguanylate cyclase, GGDEF domain MADE_1004895 PF00072 Response regulator receiver domain MADE_1004900 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term MADE_1004900 PF14489 QueF-like protein MADE_1004905 PF07348 Syd protein (SUKH-2) MADE_1004940 PF00849 RNA pseudouridylate synthase MADE_1004945 PF00258 Flavodoxin MADE_1004950 PF00132 Bacterial transferase hexapeptide (six repeats) MADE_1004950 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal MADE_1004950 PF14602 Hexapeptide repeat of succinyl-transferase MADE_1005210 PF13464 Domain of unknown function (DUF4115) MADE_1005215 PF04551 GcpE protein MADE_1005220 PF03129 Anticodon binding domain MADE_1005220 PF13393 Histidyl-tRNA synthetase MADE_1005225 PF09976 Tetratricopeptide repeat-like domain MADE_1005230 PF13360 PQQ-like domain MADE_1005235 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MADE_1005235 PF01926 50S ribosome-binding GTPase MADE_1005250 PF13742 OB-fold nucleic acid binding domain MADE_1005250 PF02601 Exonuclease VII, large subunit MADE_1005255 PF00571 CBS domain MADE_1005255 PF00478 IMP dehydrogenase / GMP reductase domain MADE_1005260 PF00117 Glutamine amidotransferase class-I MADE_1005260 PF00958 GMP synthase C terminal domain MADE_1005260 PF02540 NAD synthase MADE_1005275 PF00672 HAMP domain MADE_1005275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1005285 PF02253 Phospholipase A1 MADE_1005290 PF12706 Beta-lactamase superfamily domain MADE_1005290 PF00753 Metallo-beta-lactamase superfamily MADE_1005295 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MADE_1005295 PF03129 Anticodon binding domain MADE_1005300 PF18389 TrmO C-terminal domain MADE_1005300 PF01980 tRNA-methyltransferase O MADE_1005310 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MADE_1005310 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MADE_1005320 PF00889 Elongation factor TS MADE_1005335 PF01765 Ribosome recycling factor MADE_1005340 PF01255 Putative undecaprenyl diphosphate synthase MADE_1005350 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MADE_1005350 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MADE_1005350 PF13288 DXP reductoisomerase C-terminal domain MADE_1005355 PF17820 PDZ domain MADE_1005355 PF02163 Peptidase family M50 MADE_1005360 PF07244 Surface antigen variable number repeat MADE_1005360 PF01103 Surface antigen MADE_1005365 PF03938 Outer membrane protein (OmpH-like) MADE_1005370 PF07977 FabA-like domain MADE_1005375 PF00132 Bacterial transferase hexapeptide (six repeats) MADE_1005375 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 MADE_1005380 PF02684 Lipid-A-disaccharide synthetase MADE_1005385 PF01351 Ribonuclease HII MADE_1005390 PF01336 OB-fold nucleic acid binding domain MADE_1005390 PF02811 PHP domain MADE_1005390 PF07733 Bacterial DNA polymerase III alpha NTPase domain MADE_1005390 PF14579 Helix-hairpin-helix motif MADE_1005390 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MADE_1005395 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MADE_1005400 PF11734 TilS substrate C-terminal domain MADE_1005400 PF09179 TilS substrate binding domain MADE_1005400 PF01171 PP-loop family MADE_1005405 PF03707 Bacterial signalling protein N terminal repeat MADE_1005405 PF00563 EAL domain MADE_1005405 PF00990 Diguanylate cyclase, GGDEF domain MADE_1005410 PF02254 TrkA-N domain MADE_1005410 PF02080 TrkA-C domain MADE_1005410 PF00999 Sodium/hydrogen exchanger family MADE_1005420 PF14437 MafB19-like deaminase MADE_1005430 PF00497 Bacterial extracellular solute-binding proteins, family 3 MADE_1005430 PF01464 Transglycosylase SLT domain MADE_1005435 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MADE_1005435 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal MADE_1005435 PF02769 AIR synthase related protein, C-terminal domain MADE_1005445 PF01713 Smr domain MADE_1005485 PF00691 OmpA family MADE_1005485 PF05736 OprF membrane domain MADE_1005490 PF00005 ABC transporter MADE_1005490 PF00664 ABC transporter transmembrane region MADE_1005495 PF13700 Domain of unknown function (DUF4158) MADE_1005495 PF01526 Tn3 transposase DDE domain MADE_1005505 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_1005505 PF00403 Heavy-metal-associated domain MADE_1005505 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MADE_1005510 PF03203 MerC mercury resistance protein MADE_1005515 PF00403 Heavy-metal-associated domain MADE_1005520 PF02411 MerT mercuric transport protein MADE_1005525 PF13411 MerR HTH family regulatory protein MADE_1005535 PF03243 Alkylmercury lyase MADE_1005535 PF12324 Helix-turn-helix domain of alkylmercury lyase MADE_1005540 PF02411 MerT mercuric transport protein MADE_1005545 PF00403 Heavy-metal-associated domain MADE_1005550 PF02411 MerT mercuric transport protein MADE_1005555 PF01502 Phosphoribosyl-AMP cyclohydrolase MADE_1005560 PF09278 MerR, DNA binding MADE_1005560 PF00376 MerR family regulatory protein MADE_1005585 PF09278 MerR, DNA binding MADE_1005585 PF00376 MerR family regulatory protein MADE_1005590 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MADE_1005590 PF00403 Heavy-metal-associated domain MADE_1005590 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_1005595 PF12324 Helix-turn-helix domain of alkylmercury lyase MADE_1005595 PF03243 Alkylmercury lyase MADE_1005605 PF05052 MerE protein MADE_1005625 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MADE_1005625 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MADE_1005635 PF01526 Tn3 transposase DDE domain MADE_1005635 PF13700 Domain of unknown function (DUF4158) MADE_1005640 PF00817 impB/mucB/samB family MADE_1005640 PF13438 Domain of unknown function (DUF4113) MADE_1005640 PF11799 impB/mucB/samB family C-terminal domain MADE_1005650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MADE_1005650 PF00529 HlyD membrane-fusion protein of T1SS MADE_1005655 PF00072 Response regulator receiver domain MADE_1005655 PF00196 Bacterial regulatory proteins, luxR family MADE_1005695 PF00072 Response regulator receiver domain MADE_1005695 PF01584 CheW-like domain MADE_1005700 PF01739 CheR methyltransferase, SAM binding domain MADE_1005700 PF03705 CheR methyltransferase, all-alpha domain MADE_1005705 PF00460 Flagella basal body rod protein MADE_1005710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MADE_1005710 PF00460 Flagella basal body rod protein MADE_1005715 PF13861 FlgD Tudor-like domain MADE_1005715 PF13860 FlgD Ig-like domain MADE_1005715 PF03963 Flagellar hook capping protein - N-terminal region MADE_1005720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MADE_1005720 PF07559 Flagellar basal body protein FlaE MADE_1005720 PF00460 Flagella basal body rod protein MADE_1005725 PF00460 Flagella basal body rod protein MADE_1005725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MADE_1005730 PF00460 Flagella basal body rod protein MADE_1005730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MADE_1005735 PF02107 Flagellar L-ring protein MADE_1005740 PF02119 Flagellar P-ring protein MADE_1005745 PF10135 Rod binding protein MADE_1005745 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase MADE_1005755 PF00669 Bacterial flagellin N-terminal helical region MADE_1005760 PF07196 Flagellin hook IN motif MADE_1005760 PF00669 Bacterial flagellin N-terminal helical region MADE_1005760 PF00700 Bacterial flagellin C-terminal helical region MADE_1005770 PF07196 Flagellin hook IN motif MADE_1005770 PF00700 Bacterial flagellin C-terminal helical region MADE_1005770 PF00669 Bacterial flagellin N-terminal helical region MADE_1005780 PF02465 Flagellar hook-associated protein 2 N-terminus MADE_1005780 PF07195 Flagellar hook-associated protein 2 C-terminus MADE_1005780 PF07196 Flagellin hook IN motif MADE_1005785 PF02561 Flagellar protein FliS MADE_1005820 PF03102 NeuB family MADE_1005820 PF08666 SAF domain MADE_1005825 PF01548 Transposase MADE_1005825 PF02371 Transposase IS116/IS110/IS902 family MADE_1005840 PF01527 Transposase MADE_1005845 PF13276 HTH-like domain MADE_1005845 PF13683 Integrase core domain MADE_1005860 PF02348 Cytidylyltransferase MADE_1005865 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MADE_1005870 PF02719 Polysaccharide biosynthesis protein MADE_1005875 PF00669 Bacterial flagellin N-terminal helical region MADE_1005875 PF12445 Flagellin protein MADE_1005875 PF00700 Bacterial flagellin C-terminal helical region MADE_1005880 PF02954 Bacterial regulatory protein, Fis family MADE_1005880 PF00072 Response regulator receiver domain MADE_1005880 PF00158 Sigma-54 interaction domain MADE_1005885 PF00512 His Kinase A (phospho-acceptor) domain MADE_1005885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1005885 PF00989 PAS fold MADE_1005890 PF00158 Sigma-54 interaction domain MADE_1005890 PF02954 Bacterial regulatory protein, Fis family MADE_1005895 PF02049 Flagellar hook-basal body complex protein FliE MADE_1005900 PF01514 Secretory protein of YscJ/FliF family MADE_1005900 PF08345 Flagellar M-ring protein C-terminal MADE_1005905 PF14842 FliG N-terminal domain MADE_1005905 PF14841 FliG middle domain MADE_1005905 PF01706 FliG C-terminal domain MADE_1005915 PF18269 T3SS EscN ATPase C-terminal domain MADE_1005915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MADE_1005935 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MADE_1005935 PF02154 Flagellar motor switch protein FliM MADE_1005940 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MADE_1005945 PF04347 Flagellar biosynthesis protein, FliO MADE_1005950 PF00813 FliP family MADE_1005955 PF01313 Bacterial export proteins, family 3 MADE_1005960 PF01311 Bacterial export proteins, family 1 MADE_1005965 PF01312 FlhB HrpN YscU SpaS Family MADE_1005970 PF00771 FHIPEP family MADE_1005975 PF00448 SRP54-type protein, GTPase domain MADE_1005980 PF10609 NUBPL iron-transfer P-loop NTPase MADE_1005985 PF04539 Sigma-70 region 3 MADE_1005985 PF04542 Sigma-70 region 2 MADE_1005985 PF04545 Sigma-70, region 4 MADE_1005990 PF00072 Response regulator receiver domain MADE_1005995 PF04344 Chemotaxis phosphatase, CheZ MADE_1006000 PF01627 Hpt domain MADE_1006000 PF01584 CheW-like domain MADE_1006000 PF02895 Signal transducing histidine kinase, homodimeric domain MADE_1006000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1006000 PF07194 P2 response regulator binding domain MADE_1006005 PF01339 CheB methylesterase MADE_1006005 PF00072 Response regulator receiver domain MADE_1006010 PF13614 AAA domain MADE_1006020 PF01584 CheW-like domain MADE_1006030 PF04204 Homoserine O-succinyltransferase MADE_1006035 PF02574 Homocysteine S-methyltransferase MADE_1006035 PF00809 Pterin binding enzyme MADE_1006035 PF02310 B12 binding domain MADE_1006035 PF02965 Vitamin B12 dependent methionine synthase, activation domain MADE_1006035 PF02607 B12 binding domain MADE_1006040 PF02310 B12 binding domain MADE_1006040 PF02607 B12 binding domain MADE_1006040 PF02965 Vitamin B12 dependent methionine synthase, activation domain MADE_1006040 PF00809 Pterin binding enzyme MADE_1006040 PF02574 Homocysteine S-methyltransferase MADE_1006050 PF06865 Pyrimidine/purine nucleoside phosphorylase MADE_1006055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1006055 PF03466 LysR substrate binding domain MADE_1006060 PF03466 LysR substrate binding domain MADE_1006060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1006065 PF00484 Carbonic anhydrase MADE_1006070 PF01740 STAS domain MADE_1006070 PF00916 Sulfate permease family MADE_1006080 PF13977 BetI-type transcriptional repressor, C-terminal MADE_1006080 PF00440 Bacterial regulatory proteins, tetR family MADE_1006085 PF01431 Peptidase family M13 MADE_1006085 PF05649 Peptidase family M13 MADE_1006095 PF02631 RecX family MADE_1006100 PF01411 tRNA synthetases class II (A) MADE_1006100 PF02272 DHHA1 domain MADE_1006100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MADE_1006105 PF02599 Global regulator protein family MADE_1006120 PF02436 Conserved carboxylase domain MADE_1006120 PF00364 Biotin-requiring enzyme MADE_1006120 PF00682 HMGL-like MADE_1006125 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit MADE_1006130 PF00005 ABC transporter MADE_1006135 PF00005 ABC transporter MADE_1006135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MADE_1006140 PF12911 N-terminal TM domain of oligopeptide transport permease C MADE_1006140 PF00528 Binding-protein-dependent transport system inner membrane component MADE_1006145 PF00528 Binding-protein-dependent transport system inner membrane component MADE_1006150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MADE_1006155 PF00158 Sigma-54 interaction domain MADE_1006155 PF02954 Bacterial regulatory protein, Fis family MADE_1006160 PF04012 PspA/IM30 family MADE_1006175 PF00351 Biopterin-dependent aromatic amino acid hydroxylase MADE_1006180 PF18024 Helix-turn-helix domain MADE_1006180 PF00158 Sigma-54 interaction domain MADE_1006190 PF02798 Glutathione S-transferase, N-terminal domain MADE_1006190 PF14497 Glutathione S-transferase, C-terminal domain MADE_1006195 PF01037 Lrp/AsnC ligand binding domain MADE_1006200 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MADE_1006200 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MADE_1006210 PF03301 Tryptophan 2,3-dioxygenase MADE_1006220 PF07715 TonB-dependent Receptor Plug Domain MADE_1006220 PF00593 TonB dependent receptor MADE_1006260 PF01618 MotA/TolQ/ExbB proton channel family MADE_1006265 PF02472 Biopolymer transport protein ExbD/TolR MADE_1006270 PF03544 Gram-negative bacterial TonB protein C-terminal MADE_1006285 PF08351 Domain of unknown function (DUF1726) MADE_1006285 PF17176 tRNA-binding domain MADE_1006285 PF05127 Helicase MADE_1006285 PF13718 GNAT acetyltransferase 2 MADE_1006310 PF01636 Phosphotransferase enzyme family MADE_1006320 PF00583 Acetyltransferase (GNAT) family MADE_1006335 PF03466 LysR substrate binding domain MADE_1006335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1006350 PF00296 Luciferase-like monooxygenase MADE_1006355 PF00248 Aldo/keto reductase family MADE_1006370 PF13533 Biotin-lipoyl like MADE_1006380 PF00009 Elongation factor Tu GTP binding domain MADE_1006380 PF16658 Class II release factor RF3, C-terminal domain MADE_1006380 PF03144 Elongation factor Tu domain 2 MADE_1006385 PF03485 Arginyl tRNA synthetase N terminal domain MADE_1006385 PF05746 DALR anticodon binding domain MADE_1006385 PF00750 tRNA synthetases class I (R) MADE_1006395 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MADE_1006415 PF00291 Pyridoxal-phosphate dependent enzyme MADE_1006425 PF00990 Diguanylate cyclase, GGDEF domain MADE_1006425 PF17158 Membrane-associated sensor, integral membrane domain MADE_1006430 PF04224 Protein of unknown function, DUF417 MADE_1006450 PF00487 Fatty acid desaturase MADE_1006455 PF00175 Oxidoreductase NAD-binding domain MADE_1006455 PF00111 2Fe-2S iron-sulfur cluster binding domain MADE_1006455 PF00970 Oxidoreductase FAD-binding domain MADE_1006465 PF00472 RF-1 domain MADE_1006465 PF03462 PCRF domain MADE_1006470 PF01336 OB-fold nucleic acid binding domain MADE_1006470 PF00152 tRNA synthetases class II (D, K and N) MADE_1006475 PF02558 Ketopantoate reductase PanE/ApbA MADE_1006475 PF08546 Ketopantoate reductase PanE/ApbA C terminal MADE_1006480 PF00849 RNA pseudouridylate synthase MADE_1006490 PF05193 Peptidase M16 inactive domain MADE_1006490 PF00675 Insulinase (Peptidase family M16) MADE_1006495 PF04262 Glutamate-cysteine ligase MADE_1006520 PF01713 Smr domain MADE_1006525 PF05175 Methyltransferase small domain MADE_1006530 PF01264 Chorismate synthase MADE_1006540 PF04293 SpoVR like protein MADE_1006545 PF04285 Protein of unknown function (DUF444) MADE_1006550 PF08298 PrkA AAA domain MADE_1006550 PF06798 PrkA serine protein kinase C-terminal domain MADE_1006560 PF00462 Glutaredoxin MADE_1006565 PF00593 TonB dependent receptor MADE_1006565 PF07715 TonB-dependent Receptor Plug Domain MADE_1006580 PF07715 TonB-dependent Receptor Plug Domain MADE_1006580 PF00593 TonB dependent receptor MADE_1006585 PF04324 BFD-like [2Fe-2S] binding domain MADE_1006590 PF00578 AhpC/TSA family MADE_1006590 PF10417 C-terminal domain of 1-Cys peroxiredoxin MADE_1006595 PF00929 Exonuclease MADE_1006600 PF18393 MotY N-terminal domain MADE_1006600 PF00691 OmpA family MADE_1006605 PF03009 Glycerophosphoryl diester phosphodiesterase family MADE_1006610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MADE_1006615 PF00313 'Cold-shock' DNA-binding domain MADE_1006625 PF02225 PA domain MADE_1006625 PF04389 Peptidase family M28 MADE_1006630 PF00730 HhH-GPD superfamily base excision DNA repair protein MADE_1006630 PF00633 Helix-hairpin-helix motif MADE_1006635 PF02508 Rnf-Nqr subunit, membrane protein MADE_1006640 PF04205 FMN-binding domain MADE_1006645 PF03116 NQR2, RnfD, RnfE family MADE_1006650 PF12838 4Fe-4S dicluster domain MADE_1006650 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MADE_1006650 PF10531 SLBB domain MADE_1006650 PF13375 RnfC Barrel sandwich hybrid domain MADE_1006655 PF04060 Putative Fe-S cluster MADE_1006665 PF01554 MatE MADE_1006670 PF04851 Type III restriction enzyme, res subunit MADE_1006670 PF02151 UvrB/uvrC motif MADE_1006670 PF12344 Ultra-violet resistance protein B MADE_1006670 PF00271 Helicase conserved C-terminal domain MADE_1006670 PF17757 UvrB interaction domain MADE_1006680 PF06508 Queuosine biosynthesis protein QueC MADE_1006685 PF04055 Radical SAM superfamily MADE_1006695 PF00733 Asparagine synthase MADE_1006695 PF13537 Glutamine amidotransferase domain MADE_1006720 PF03600 Citrate transporter MADE_1006720 PF02080 TrkA-C domain MADE_1006725 PF00009 Elongation factor Tu GTP binding domain MADE_1006730 PF00459 Inositol monophosphatase family MADE_1006740 PF01507 Phosphoadenosine phosphosulfate reductase family MADE_1006745 PF00474 Sodium:solute symporter family MADE_1006750 PF00990 Diguanylate cyclase, GGDEF domain MADE_1006760 PF04542 Sigma-70 region 2 MADE_1006760 PF08281 Sigma-70, region 4 MADE_1006775 PF13519 von Willebrand factor type A domain MADE_1006775 PF07584 Aerotolerance regulator N-terminal MADE_1006780 PF00092 von Willebrand factor type A domain MADE_1006790 PF01882 Protein of unknown function DUF58 MADE_1006795 PF07726 ATPase family associated with various cellular activities (AAA) MADE_1006795 PF17863 AAA lid domain MADE_1006800 PF00108 Thiolase, N-terminal domain MADE_1006800 PF02803 Thiolase, C-terminal domain MADE_1006820 PF13472 GDSL-like Lipase/Acylhydrolase family MADE_1006825 PF00005 ABC transporter MADE_1006835 PF08338 Domain of unknown function (DUF1731) MADE_1006835 PF01370 NAD dependent epimerase/dehydratase family MADE_1006840 PF02152 Dihydroneopterin aldolase MADE_1006845 PF01594 AI-2E family transporter MADE_1006850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1006850 PF08918 PhoQ Sensor MADE_1006855 PF00486 Transcriptional regulatory protein, C terminal MADE_1006855 PF00072 Response regulator receiver domain MADE_1006870 PF03795 YCII-related domain MADE_1006875 PF00290 Tryptophan synthase alpha chain MADE_1006880 PF00291 Pyridoxal-phosphate dependent enzyme MADE_1006885 PF00218 Indole-3-glycerol phosphate synthase MADE_1006885 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MADE_1006890 PF02885 Glycosyl transferase family, helical bundle domain MADE_1006890 PF00591 Glycosyl transferase family, a/b domain MADE_1006895 PF00117 Glutamine amidotransferase class-I MADE_1006900 PF00425 chorismate binding enzyme MADE_1006900 PF04715 Anthranilate synthase component I, N terminal region MADE_1006905 PF02811 PHP domain MADE_1006910 PF01300 Telomere recombination MADE_1006915 PF02616 Segregation and condensation protein ScpA MADE_1006920 PF04079 Segregation and condensation complex subunit ScpB MADE_1006925 PF00849 RNA pseudouridylate synthase MADE_1006925 PF01479 S4 domain MADE_1006930 PF00248 Aldo/keto reductase family MADE_1006935 PF14602 Hexapeptide repeat of succinyl-transferase MADE_1006935 PF12464 Maltose acetyltransferase MADE_1006945 PF04286 Protein of unknown function (DUF445) MADE_1006960 PF00005 ABC transporter MADE_1006960 PF00664 ABC transporter transmembrane region MADE_1006965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MADE_1006965 PF00529 HlyD membrane-fusion protein of T1SS MADE_1006970 PF05724 Thiopurine S-methyltransferase (TPMT) MADE_1006975 PF04355 SmpA / OmlA family MADE_1006980 PF02463 RecF/RecN/SMC N terminal domain MADE_1006985 PF00210 Ferritin-like domain MADE_1006995 PF00465 Iron-containing alcohol dehydrogenase MADE_1007010 PF00561 alpha/beta hydrolase fold MADE_1007020 PF00593 TonB dependent receptor MADE_1007020 PF07715 TonB-dependent Receptor Plug Domain MADE_1007025 PF00072 Response regulator receiver domain MADE_1007025 PF00196 Bacterial regulatory proteins, luxR family MADE_1007040 PF00665 Integrase core domain MADE_1007040 PF13333 Integrase core domain MADE_1007040 PF13276 HTH-like domain MADE_1007045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1007045 PF00989 PAS fold MADE_1007045 PF00512 His Kinase A (phospho-acceptor) domain MADE_1007050 PF01025 GrpE MADE_1007055 PF00012 Hsp70 protein MADE_1007060 PF00684 DnaJ central domain MADE_1007060 PF01556 DnaJ C terminal domain MADE_1007060 PF00226 DnaJ domain MADE_1007065 PF01322 Cytochrome C' MADE_1007070 PF12792 CSS motif domain associated with EAL MADE_1007070 PF00563 EAL domain MADE_1007075 PF13193 AMP-binding enzyme C-terminal domain MADE_1007075 PF16177 Acetyl-coenzyme A synthetase N-terminus MADE_1007075 PF00501 AMP-binding enzyme MADE_1007085 PF05173 Dihydrodipicolinate reductase, C-terminus MADE_1007085 PF01113 Dihydrodipicolinate reductase, N-terminus MADE_1007090 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MADE_1007090 PF00117 Glutamine amidotransferase class-I MADE_1007095 PF02142 MGS-like domain MADE_1007095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MADE_1007095 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MADE_1007100 PF03449 Transcription elongation factor, N-terminal MADE_1007100 PF01272 Transcription elongation factor, GreA/GreB, C-term MADE_1007115 PF00011 Hsp20/alpha crystallin family MADE_1007120 PF00871 Acetokinase family MADE_1007125 PF01515 Phosphate acetyl/butaryl transferase MADE_1007125 PF07085 DRTGG domain MADE_1007135 PF00795 Carbon-nitrogen hydrolase MADE_1007140 PF03471 Transporter associated domain MADE_1007140 PF00571 CBS domain MADE_1007145 PF02130 Uncharacterized protein family UPF0054 MADE_1007150 PF02562 PhoH-like protein MADE_1007155 PF00919 Uncharacterized protein family UPF0004 MADE_1007155 PF01938 TRAM domain MADE_1007155 PF04055 Radical SAM superfamily MADE_1007160 PF01494 FAD binding domain MADE_1007200 PF00593 TonB dependent receptor MADE_1007200 PF07715 TonB-dependent Receptor Plug Domain MADE_1007205 PF03061 Thioesterase superfamily MADE_1007210 PF01613 Flavin reductase like domain MADE_1007220 PF01235 Sodium:alanine symporter family MADE_1007230 PF08443 RimK-like ATP-grasp domain MADE_1007230 PF18030 RimK PreATP-grasp domain MADE_1007250 PF00202 Aminotransferase class-III MADE_1007255 PF04055 Radical SAM superfamily MADE_1007255 PF06968 Biotin and Thiamin Synthesis associated domain MADE_1007260 PF00155 Aminotransferase class I and II MADE_1007275 PF03575 Peptidase family S51 MADE_1007280 PF01451 Low molecular weight phosphotyrosine protein phosphatase MADE_1007285 PF01032 FecCD transport family MADE_1007290 PF00005 ABC transporter MADE_1007295 PF01474 Class-II DAHP synthetase family MADE_1007310 PF00005 ABC transporter MADE_1007310 PF00664 ABC transporter transmembrane region MADE_1007315 PF04055 Radical SAM superfamily MADE_1007315 PF06463 Molybdenum Cofactor Synthesis C MADE_1007325 PF00486 Transcriptional regulatory protein, C terminal MADE_1007325 PF00072 Response regulator receiver domain MADE_1007335 PF00255 Glutathione peroxidase MADE_1007350 PF00990 Diguanylate cyclase, GGDEF domain MADE_1007350 PF13188 PAS domain MADE_1007350 PF03707 Bacterial signalling protein N terminal repeat MADE_1007350 PF00563 EAL domain MADE_1007385 PF13276 HTH-like domain MADE_1007385 PF00665 Integrase core domain MADE_1007385 PF13333 Integrase core domain MADE_1007390 PF00593 TonB dependent receptor MADE_1007390 PF04886 PT repeat MADE_1007390 PF07715 TonB-dependent Receptor Plug Domain MADE_1007395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MADE_1007395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MADE_1007395 PF02770 Acyl-CoA dehydrogenase, middle domain MADE_1007395 PF09317 Domain of unknown function (DUF1974) MADE_1007410 PF03279 Bacterial lipid A biosynthesis acyltransferase MADE_1007420 PF03710 Glutamate-ammonia ligase adenylyltransferase MADE_1007420 PF08335 GlnD PII-uridylyltransferase MADE_1007435 PF01541 GIY-YIG catalytic domain MADE_1007440 PF00294 pfkB family carbohydrate kinase MADE_1007440 PF01467 Cytidylyltransferase-like MADE_1007445 PF01467 Cytidylyltransferase-like MADE_1007445 PF00294 pfkB family carbohydrate kinase MADE_1007450 PF00294 pfkB family carbohydrate kinase MADE_1007450 PF01467 Cytidylyltransferase-like MADE_1007455 PF13401 AAA domain MADE_1007455 PF01471 Putative peptidoglycan binding domain MADE_1007465 PF13614 AAA domain MADE_1007480 PF02397 Bacterial sugar transferase MADE_1007495 PF13439 Glycosyltransferase Family 4 MADE_1007495 PF00534 Glycosyl transferases group 1 MADE_1007520 PF00535 Glycosyl transferase family 2 MADE_1007525 PF13439 Glycosyltransferase Family 4 MADE_1007525 PF00534 Glycosyl transferases group 1 MADE_1007535 PF05159 Capsule polysaccharide biosynthesis protein MADE_1007540 PF00535 Glycosyl transferase family 2 MADE_1007545 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MADE_1007550 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MADE_1007555 PF01926 50S ribosome-binding GTPase MADE_1007555 PF06071 Protein of unknown function (DUF933) MADE_1007560 PF01195 Peptidyl-tRNA hydrolase MADE_1007570 PF01386 Ribosomal L25p family MADE_1007570 PF14693 Ribosomal protein TL5, C-terminal domain MADE_1007575 PF08240 Alcohol dehydrogenase GroES-like domain MADE_1007575 PF00107 Zinc-binding dehydrogenase MADE_1007595 PF00288 GHMP kinases N terminal domain MADE_1007595 PF08544 GHMP kinases C terminal MADE_1007600 PF03550 Outer membrane lipoprotein LolB MADE_1007640 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain MADE_1007640 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain MADE_1007640 PF01488 Shikimate / quinate 5-dehydrogenase MADE_1007645 PF00472 RF-1 domain MADE_1007645 PF03462 PCRF domain MADE_1007650 PF13847 Methyltransferase domain MADE_1007650 PF17827 PrmC N-terminal domain MADE_1007655 PF11849 Domain of unknown function (DUF3369) MADE_1007665 PF04247 Invasion gene expression up-regulator, SirB MADE_1007680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1007680 PF03466 LysR substrate binding domain MADE_1007690 PF04241 Protein of unknown function (DUF423) MADE_1007695 PF01728 FtsJ-like methyltransferase MADE_1007695 PF18125 RlmM ferredoxin-like domain MADE_1007700 PF14492 Elongation Factor G, domain II MADE_1007700 PF00009 Elongation factor Tu GTP binding domain MADE_1007700 PF00679 Elongation factor G C-terminus MADE_1007700 PF03144 Elongation factor Tu domain 2 MADE_1007700 PF03764 Elongation factor G, domain IV MADE_1007715 PF00069 Protein kinase domain MADE_1007720 PF01226 Formate/nitrite transporter MADE_1007725 PF13559 Domain of unknown function (DUF4129) MADE_1007725 PF01841 Transglutaminase-like superfamily MADE_1007725 PF11992 Domain of unknown function (DUF3488) MADE_1007735 PF07726 ATPase family associated with various cellular activities (AAA) MADE_1007735 PF17863 AAA lid domain MADE_1007740 PF17206 SeqA protein N-terminal domain MADE_1007740 PF03925 SeqA protein C-terminal domain MADE_1007745 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MADE_1007745 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MADE_1007745 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MADE_1007745 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MADE_1007750 PF00343 Carbohydrate phosphorylase MADE_1007755 PF03707 Bacterial signalling protein N terminal repeat MADE_1007755 PF00990 Diguanylate cyclase, GGDEF domain MADE_1007755 PF00563 EAL domain MADE_1007760 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family MADE_1007770 PF01906 Putative heavy-metal-binding MADE_1007775 PF00375 Sodium:dicarboxylate symporter family MADE_1007790 PF07687 Peptidase dimerisation domain MADE_1007790 PF01546 Peptidase family M20/M25/M40 MADE_1007795 PF03960 ArsC family MADE_1007805 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MADE_1007810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MADE_1007840 PF00091 Tubulin/FtsZ family, GTPase domain MADE_1007840 PF12327 FtsZ family, C-terminal domain MADE_1007850 PF00563 EAL domain MADE_1007850 PF00990 Diguanylate cyclase, GGDEF domain MADE_1007850 PF03707 Bacterial signalling protein N terminal repeat MADE_1007860 PF03707 Bacterial signalling protein N terminal repeat MADE_1007860 PF00563 EAL domain MADE_1007860 PF00990 Diguanylate cyclase, GGDEF domain MADE_1007865 PF00873 AcrB/AcrD/AcrF family MADE_1007875 PF00999 Sodium/hydrogen exchanger family MADE_1007875 PF02254 TrkA-N domain MADE_1007880 PF02525 Flavodoxin-like fold MADE_1007890 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MADE_1007895 PF01799 [2Fe-2S] binding domain MADE_1007895 PF00111 2Fe-2S iron-sulfur cluster binding domain MADE_1007900 PF01638 HxlR-like helix-turn-helix MADE_1007905 PF08448 PAS fold MADE_1007905 PF08447 PAS fold MADE_1007905 PF05231 MASE1 MADE_1007905 PF00990 Diguanylate cyclase, GGDEF domain MADE_1007905 PF00563 EAL domain MADE_1007905 PF13426 PAS domain MADE_1007915 PF01979 Amidohydrolase family MADE_1007920 PF00576 HIUase/Transthyretin family MADE_1007935 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MADE_1007935 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MADE_1007940 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MADE_1007940 PF01799 [2Fe-2S] binding domain MADE_1007940 PF00111 2Fe-2S iron-sulfur cluster binding domain MADE_1007940 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MADE_1007945 PF00440 Bacterial regulatory proteins, tetR family MADE_1007945 PF08362 YcdC-like protein, C-terminal region MADE_1007960 PF00860 Permease family MADE_1007965 PF00962 Adenosine/AMP deaminase MADE_1007975 PF00072 Response regulator receiver domain MADE_1007980 PF00990 Diguanylate cyclase, GGDEF domain MADE_1007980 PF00563 EAL domain MADE_1007980 PF01590 GAF domain MADE_1007980 PF00360 Phytochrome region MADE_1007985 PF00072 Response regulator receiver domain MADE_1007985 PF00990 Diguanylate cyclase, GGDEF domain MADE_1007990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1007990 PF00072 Response regulator receiver domain MADE_1007990 PF00512 His Kinase A (phospho-acceptor) domain MADE_1007990 PF09308 LuxQ, periplasmic MADE_1008000 PF00593 TonB dependent receptor MADE_1008000 PF07715 TonB-dependent Receptor Plug Domain MADE_1008005 PF00860 Permease family MADE_1008015 PF07687 Peptidase dimerisation domain MADE_1008015 PF01546 Peptidase family M20/M25/M40 MADE_1008020 PF00266 Aminotransferase class-V MADE_1008025 PF01925 Sulfite exporter TauE/SafE MADE_1008035 PF01425 Amidase MADE_1008080 PF02824 TGS domain MADE_1008080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MADE_1008080 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MADE_1008080 PF03129 Anticodon binding domain MADE_1008085 PF00707 Translation initiation factor IF-3, C-terminal domain MADE_1008085 PF05198 Translation initiation factor IF-3, N-terminal domain MADE_1008090 PF01632 Ribosomal protein L35 MADE_1008095 PF00453 Ribosomal protein L20 MADE_1008100 PF01050 Mannose-6-phosphate isomerase MADE_1008100 PF00483 Nucleotidyl transferase MADE_1008105 PF02397 Bacterial sugar transferase MADE_1008115 PF18412 Outer-membrane lipoprotein Wza C-terminal domain MADE_1008115 PF02563 Polysaccharide biosynthesis/export protein MADE_1008115 PF10531 SLBB domain MADE_1008120 PF13614 AAA domain MADE_1008150 PF00563 EAL domain MADE_1008150 PF03707 Bacterial signalling protein N terminal repeat MADE_1008150 PF00990 Diguanylate cyclase, GGDEF domain MADE_1008175 PF13477 Glycosyl transferase 4-like MADE_1008175 PF00534 Glycosyl transferases group 1 MADE_1008180 PF00535 Glycosyl transferase family 2 MADE_1008185 PF00535 Glycosyl transferase family 2 MADE_1008185 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 MADE_1008190 PF01943 Polysaccharide biosynthesis protein MADE_1008195 PF13439 Glycosyltransferase Family 4 MADE_1008195 PF00534 Glycosyl transferases group 1 MADE_1008215 PF00534 Glycosyl transferases group 1 MADE_1008215 PF13579 Glycosyl transferase 4-like domain MADE_1008220 PF01695 IstB-like ATP binding protein MADE_1008225 PF00665 Integrase core domain MADE_1008230 PF00535 Glycosyl transferase family 2 MADE_1008240 PF05598 Transposase domain (DUF772) MADE_1008240 PF01609 Transposase DDE domain MADE_1008245 PF01757 Acyltransferase family MADE_1008250 PF01409 tRNA synthetases class II core domain (F) MADE_1008250 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MADE_1008265 PF00534 Glycosyl transferases group 1 MADE_1008265 PF13439 Glycosyltransferase Family 4 MADE_1008275 PF01409 tRNA synthetases class II core domain (F) MADE_1008275 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MADE_1008280 PF03484 tRNA synthetase B5 domain MADE_1008280 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MADE_1008280 PF01588 Putative tRNA binding domain MADE_1008280 PF03147 Ferredoxin-fold anticodon binding domain MADE_1008280 PF03483 B3/4 domain MADE_1008285 PF00216 Bacterial DNA-binding protein MADE_1008295 PF04073 Aminoacyl-tRNA editing domain MADE_1008300 PF01804 Penicillin amidase MADE_1008305 PF00933 Glycosyl hydrolase family 3 N terminal domain MADE_1008310 PF01923 Cobalamin adenosyltransferase MADE_1008320 PF00270 DEAD/DEAH box helicase MADE_1008320 PF02559 CarD-like/TRCF domain MADE_1008320 PF17757 UvrB interaction domain MADE_1008320 PF03461 TRCF domain MADE_1008320 PF00271 Helicase conserved C-terminal domain MADE_1008330 PF02687 FtsX-like permease family MADE_1008330 PF12704 MacB-like periplasmic core domain MADE_1008340 PF00072 Response regulator receiver domain MADE_1008340 PF08448 PAS fold MADE_1008340 PF00512 His Kinase A (phospho-acceptor) domain MADE_1008340 PF13188 PAS domain MADE_1008340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1008355 PF03372 Endonuclease/Exonuclease/phosphatase family MADE_1008390 PF07690 Major Facilitator Superfamily MADE_1008400 PF00483 Nucleotidyl transferase MADE_1008425 PF00682 HMGL-like MADE_1008430 PF00289 Biotin carboxylase, N-terminal domain MADE_1008430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MADE_1008430 PF00364 Biotin-requiring enzyme MADE_1008430 PF02785 Biotin carboxylase C-terminal domain MADE_1008435 PF00378 Enoyl-CoA hydratase/isomerase MADE_1008440 PF01039 Carboxyl transferase domain MADE_1008445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MADE_1008445 PF02770 Acyl-CoA dehydrogenase, middle domain MADE_1008445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MADE_1008450 PF13411 MerR HTH family regulatory protein MADE_1008455 PF02803 Thiolase, C-terminal domain MADE_1008455 PF00108 Thiolase, N-terminal domain MADE_1008465 PF00266 Aminotransferase class-V MADE_1008470 PF17151 Periplasmic sensor domain MADE_1008470 PF00990 Diguanylate cyclase, GGDEF domain MADE_1008480 PF08411 Exonuclease C-terminal MADE_1008480 PF00929 Exonuclease MADE_1008485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1008485 PF00072 Response regulator receiver domain MADE_1008485 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MADE_1008485 PF00672 HAMP domain MADE_1008485 PF00512 His Kinase A (phospho-acceptor) domain MADE_1008485 PF01627 Hpt domain MADE_1008490 PF01112 Asparaginase MADE_1008500 PF02333 Phytase MADE_1008535 PF00270 DEAD/DEAH box helicase MADE_1008535 PF00271 Helicase conserved C-terminal domain MADE_1008535 PF04408 Helicase associated domain (HA2) MADE_1008535 PF11898 Domain of unknown function (DUF3418) MADE_1008535 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MADE_1008550 PF17785 PUA-like domain MADE_1008550 PF10672 S-adenosylmethionine-dependent methyltransferase MADE_1008555 PF00698 Acyl transferase domain MADE_1008555 PF14765 Polyketide synthase dehydratase MADE_1008555 PF02801 Beta-ketoacyl synthase, C-terminal domain MADE_1008555 PF00109 Beta-ketoacyl synthase, N-terminal domain MADE_1008555 PF00550 Phosphopantetheine attachment site MADE_1008555 PF08240 Alcohol dehydrogenase GroES-like domain MADE_1008555 PF16197 Ketoacyl-synthetase C-terminal extension MADE_1008555 PF08659 KR domain MADE_1008560 PF00075 RNase H MADE_1008565 PF00929 Exonuclease MADE_1008585 PF13181 Tetratricopeptide repeat MADE_1008595 PF03618 Kinase/pyrophosphorylase MADE_1008600 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MADE_1008600 PF02896 PEP-utilising enzyme, TIM barrel domain MADE_1008600 PF00391 PEP-utilising enzyme, mobile domain MADE_1008625 PF12804 MobA-like NTP transferase domain MADE_1008630 PF02634 FdhD/NarQ family MADE_1008635 PF00384 Molybdopterin oxidoreductase MADE_1008640 PF13673 Acetyltransferase (GNAT) domain MADE_1008645 PF13419 Haloacid dehalogenase-like hydrolase MADE_1008655 PF00575 S1 RNA binding domain MADE_1008655 PF10150 Ribonuclease E/G family MADE_1008655 PF12111 Polyribonucleotide phosphorylase C terminal MADE_1008660 PF00849 RNA pseudouridylate synthase MADE_1008660 PF01479 S4 domain MADE_1008665 PF13419 Haloacid dehalogenase-like hydrolase MADE_1008670 PF02545 Maf-like protein MADE_1008675 PF02620 Large ribosomal RNA subunit accumulation protein YceD MADE_1008680 PF01783 Ribosomal L32p protein family MADE_1008695 PF00698 Acyl transferase domain MADE_1008705 PF00550 Phosphopantetheine attachment site MADE_1008710 PF02801 Beta-ketoacyl synthase, C-terminal domain MADE_1008710 PF00109 Beta-ketoacyl synthase, N-terminal domain MADE_1008715 PF01063 Amino-transferase class IV MADE_1008720 PF02618 YceG-like family MADE_1008725 PF02223 Thymidylate kinase MADE_1008730 PF09115 DNA polymerase III, delta subunit, C terminal MADE_1008735 PF01026 TatD related DNase MADE_1008745 PF13460 NAD(P)H-binding MADE_1008750 PF00990 Diguanylate cyclase, GGDEF domain MADE_1008750 PF08448 PAS fold MADE_1008775 PF00561 alpha/beta hydrolase fold MADE_1008780 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MADE_1008780 PF00378 Enoyl-CoA hydratase/isomerase MADE_1008780 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MADE_1008785 PF02803 Thiolase, C-terminal domain MADE_1008785 PF00108 Thiolase, N-terminal domain MADE_1008790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MADE_1008790 PF12806 Acetyl-CoA dehydrogenase C-terminal like MADE_1008790 PF02770 Acyl-CoA dehydrogenase, middle domain MADE_1008790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MADE_1008795 PF00873 AcrB/AcrD/AcrF family MADE_1008800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MADE_1008810 PF00596 Class II Aldolase and Adducin N-terminal domain MADE_1008815 PF13378 Enolase C-terminal domain-like MADE_1008815 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MADE_1008830 PF02770 Acyl-CoA dehydrogenase, middle domain MADE_1008830 PF12806 Acetyl-CoA dehydrogenase C-terminal like MADE_1008830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MADE_1008830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MADE_1008845 PF13746 4Fe-4S dicluster domain MADE_1008845 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase MADE_1008845 PF12801 4Fe-4S binding domain MADE_1008855 PF01232 Mannitol dehydrogenase Rossmann domain MADE_1008855 PF08125 Mannitol dehydrogenase C-terminal domain MADE_1008860 PF01609 Transposase DDE domain MADE_1008860 PF05598 Transposase domain (DUF772) MADE_1008870 PF03466 LysR substrate binding domain MADE_1008870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1008875 PF01575 MaoC like domain MADE_1008885 PF00924 Mechanosensitive ion channel MADE_1008890 PF00593 TonB dependent receptor MADE_1008890 PF07715 TonB-dependent Receptor Plug Domain MADE_1008895 PF01329 Pterin 4 alpha carbinolamine dehydratase MADE_1008900 PF00072 Response regulator receiver domain MADE_1008900 PF01627 Hpt domain MADE_1008900 PF00512 His Kinase A (phospho-acceptor) domain MADE_1008900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1008900 PF17149 Periplasmic sensor domain found in signal transduction proteins MADE_1008900 PF00672 HAMP domain MADE_1008905 PF00072 Response regulator receiver domain MADE_1008910 PF02576 RimP N-terminal domain MADE_1008910 PF17384 RimP C-terminal SH3 domain MADE_1008915 PF08529 NusA N-terminal domain MADE_1008915 PF13184 NusA-like KH domain MADE_1008915 PF00575 S1 RNA binding domain MADE_1008920 PF04760 Translation initiation factor IF-2, N-terminal region MADE_1008920 PF08364 Bacterial translation initiation factor IF-2 associated region MADE_1008920 PF11987 Translation-initiation factor 2 MADE_1008920 PF00009 Elongation factor Tu GTP binding domain MADE_1008925 PF02033 Ribosome-binding factor A MADE_1008930 PF09157 Pseudouridine synthase II TruB, C-terminal MADE_1008930 PF16198 tRNA pseudouridylate synthase B C-terminal domain MADE_1008930 PF01509 TruB family pseudouridylate synthase (N terminal domain) MADE_1008940 PF00312 Ribosomal protein S15 MADE_1008945 PF01479 S4 domain MADE_1008945 PF00849 RNA pseudouridylate synthase MADE_1008955 PF00795 Carbon-nitrogen hydrolase MADE_1008955 PF00583 Acetyltransferase (GNAT) family MADE_1008995 PF00578 AhpC/TSA family MADE_1008995 PF10417 C-terminal domain of 1-Cys peroxiredoxin MADE_1009000 PF13192 Thioredoxin domain MADE_1009000 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_1009040 PF04055 Radical SAM superfamily MADE_1009040 PF11842 Domain of unknown function (DUF3362) MADE_1009040 PF08497 Radical SAM N-terminal MADE_1009055 PF00593 TonB dependent receptor MADE_1009055 PF07715 TonB-dependent Receptor Plug Domain MADE_1009060 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MADE_1009060 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_1009070 PF13416 Bacterial extracellular solute-binding protein MADE_1009080 PF00005 ABC transporter MADE_1009085 PF01066 CDP-alcohol phosphatidyltransferase MADE_1009110 PF00563 EAL domain MADE_1009110 PF01590 GAF domain MADE_1009110 PF00990 Diguanylate cyclase, GGDEF domain MADE_1009110 PF00360 Phytochrome region MADE_1009155 PF00005 ABC transporter MADE_1009160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MADE_1009165 PF01668 SmpB protein MADE_1009170 PF03364 Polyketide cyclase / dehydrase and lipid transport MADE_1009175 PF03658 RnfH family Ubiquitin MADE_1009185 PF02028 BCCT, betaine/carnitine/choline family transporter MADE_1009235 PF13649 Methyltransferase domain MADE_1009250 PF01548 Transposase MADE_1009250 PF02371 Transposase IS116/IS110/IS902 family MADE_1009290 PF13333 Integrase core domain MADE_1009290 PF13276 HTH-like domain MADE_1009290 PF00665 Integrase core domain MADE_1009300 PF13276 HTH-like domain MADE_1009300 PF00665 Integrase core domain MADE_1009300 PF13333 Integrase core domain MADE_1009350 PF07719 Tetratricopeptide repeat MADE_1009350 PF13181 Tetratricopeptide repeat MADE_1009365 PF06470 SMC proteins Flexible Hinge Domain MADE_1009365 PF02463 RecF/RecN/SMC N terminal domain MADE_1009370 PF04354 ZipA, C-terminal FtsZ-binding domain MADE_1009410 PF02606 Tetraacyldisaccharide-1-P 4'-kinase MADE_1009415 PF03966 Trm112p-like protein MADE_1009420 PF02348 Cytidylyltransferase MADE_1009430 PF00919 Uncharacterized protein family UPF0004 MADE_1009430 PF04055 Radical SAM superfamily MADE_1009430 PF18693 TRAM domain MADE_1009445 PF00899 ThiF family MADE_1009450 PF13409 Glutathione S-transferase, N-terminal domain MADE_1009455 PF02678 Pirin MADE_1009455 PF05726 Pirin C-terminal cupin domain MADE_1009460 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MADE_1009460 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MADE_1009460 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MADE_1009460 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MADE_1009470 PF00285 Citrate synthase, C-terminal domain MADE_1009475 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MADE_1009480 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MADE_1009485 PF02910 Fumarate reductase flavoprotein C-term MADE_1009485 PF00890 FAD binding domain MADE_1009490 PF13085 2Fe-2S iron-sulfur cluster binding domain MADE_1009495 PF00676 Dehydrogenase E1 component MADE_1009495 PF16078 2-oxoglutarate dehydrogenase N-terminus MADE_1009495 PF02779 Transketolase, pyrimidine binding domain MADE_1009495 PF16870 2-oxoglutarate dehydrogenase C-terminal MADE_1009500 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MADE_1009500 PF02817 e3 binding domain MADE_1009500 PF00364 Biotin-requiring enzyme MADE_1009505 PF08442 ATP-grasp domain MADE_1009505 PF00549 CoA-ligase MADE_1009510 PF00549 CoA-ligase MADE_1009510 PF02629 CoA binding domain MADE_1009520 PF04820 Tryptophan halogenase MADE_1009530 PF18494 Pullulanase Ins domain MADE_1009530 PF03714 Bacterial pullanase-associated domain MADE_1009530 PF11852 Domain of unknown function (DUF3372) MADE_1009530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MADE_1009530 PF17967 Pullulanase N2 domain MADE_1009535 PF01734 Patatin-like phospholipase MADE_1009555 PF00128 Alpha amylase, catalytic domain MADE_1009555 PF02903 Alpha amylase, N-terminal ig-like domain MADE_1009555 PF16657 Maltogenic Amylase, C-terminal domain MADE_1009560 PF09087 Cyclomaltodextrinase, N-terminal MADE_1009560 PF00128 Alpha amylase, catalytic domain MADE_1009560 PF10438 Cyclo-malto-dextrinase C-terminal domain MADE_1009570 PF00128 Alpha amylase, catalytic domain MADE_1009570 PF02806 Alpha amylase, C-terminal all-beta domain MADE_1009570 PF00686 Starch binding domain MADE_1009570 PF01833 IPT/TIG domain MADE_1009575 PF00356 Bacterial regulatory proteins, lacI family MADE_1009580 PF00749 tRNA synthetases class I (E and Q), catalytic domain MADE_1009580 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain MADE_1009585 PF00106 short chain dehydrogenase MADE_1009590 PF12262 Bacterial virulence factor lipase N-terminal MADE_1009595 PF01804 Penicillin amidase MADE_1009600 PF01343 Peptidase family S49 MADE_1009600 PF08496 Peptidase family S49 N-terminal MADE_1009615 PF01784 NIF3 (NGG1p interacting factor 3) MADE_1009625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MADE_1009625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MADE_1009630 PF00255 Glutathione peroxidase MADE_1009635 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MADE_1009635 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MADE_1009645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MADE_1009645 PF02770 Acyl-CoA dehydrogenase, middle domain MADE_1009645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MADE_1009650 PF00378 Enoyl-CoA hydratase/isomerase MADE_1009660 PF13847 Methyltransferase domain MADE_1009670 PF11893 Domain of unknown function (DUF3413) MADE_1009670 PF00884 Sulfatase MADE_1009675 PF07208 Protein of unknown function (DUF1414) MADE_1009680 PF04245 37-kD nucleoid-associated bacterial protein MADE_1009710 PF06580 Histidine kinase MADE_1009710 PF07694 5TMR of 5TMR-LYT MADE_1009715 PF04397 LytTr DNA-binding domain MADE_1009715 PF00072 Response regulator receiver domain MADE_1009720 PF00365 Phosphofructokinase MADE_1009740 PF01609 Transposase DDE domain MADE_1009740 PF13808 DDE_Tnp_1-associated MADE_1009745 PF13737 Transposase DDE domain MADE_1009750 PF00107 Zinc-binding dehydrogenase MADE_1009750 PF08240 Alcohol dehydrogenase GroES-like domain MADE_1009755 PF08659 KR domain MADE_1009755 PF00109 Beta-ketoacyl synthase, N-terminal domain MADE_1009755 PF00698 Acyl transferase domain MADE_1009755 PF08240 Alcohol dehydrogenase GroES-like domain MADE_1009755 PF00550 Phosphopantetheine attachment site MADE_1009755 PF14765 Polyketide synthase dehydratase MADE_1009755 PF02801 Beta-ketoacyl synthase, C-terminal domain MADE_1009755 PF16197 Ketoacyl-synthetase C-terminal extension MADE_1009760 PF00106 short chain dehydrogenase MADE_1009765 PF03466 LysR substrate binding domain MADE_1009765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1009805 PF00497 Bacterial extracellular solute-binding proteins, family 3 MADE_1009805 PF00072 Response regulator receiver domain MADE_1009805 PF00989 PAS fold MADE_1009805 PF01627 Hpt domain MADE_1009805 PF00512 His Kinase A (phospho-acceptor) domain MADE_1009805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1009825 PF00270 DEAD/DEAH box helicase MADE_1009825 PF00271 Helicase conserved C-terminal domain MADE_1009830 PF01144 Coenzyme A transferase MADE_1009835 PF01144 Coenzyme A transferase MADE_1009840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1009840 PF03466 LysR substrate binding domain MADE_1009855 PF03466 LysR substrate binding domain MADE_1009855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1009865 PF00293 NUDIX domain MADE_1009870 PF04715 Anthranilate synthase component I, N terminal region MADE_1009870 PF00425 chorismate binding enzyme MADE_1009885 PF02646 RmuC family MADE_1009890 PF13860 FlgD Ig-like domain MADE_1009890 PF00082 Subtilase family MADE_1009890 PF02225 PA domain MADE_1009890 PF05922 Peptidase inhibitor I9 MADE_1009895 PF13340 Putative transposase of IS4/5 family (DUF4096) MADE_1009900 PF00676 Dehydrogenase E1 component MADE_1009905 PF02780 Transketolase, C-terminal domain MADE_1009905 PF02779 Transketolase, pyrimidine binding domain MADE_1009910 PF02817 e3 binding domain MADE_1009910 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MADE_1009910 PF00364 Biotin-requiring enzyme MADE_1009915 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ MADE_1009920 PF00069 Protein kinase domain MADE_1009930 PF00156 Phosphoribosyl transferase domain MADE_1009940 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) MADE_1009955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1009955 PF03466 LysR substrate binding domain MADE_1009960 PF00107 Zinc-binding dehydrogenase MADE_1009960 PF08240 Alcohol dehydrogenase GroES-like domain MADE_1009965 PF18011 C-terminal domain found in long catalases MADE_1009965 PF06628 Catalase-related immune-responsive MADE_1009965 PF00199 Catalase MADE_1009975 PF08240 Alcohol dehydrogenase GroES-like domain MADE_1009975 PF00107 Zinc-binding dehydrogenase MADE_1009980 PF01638 HxlR-like helix-turn-helix MADE_1009985 PF00128 Alpha amylase, catalytic domain MADE_1009995 PF01145 SPFH domain / Band 7 family MADE_1009995 PF15975 Flotillin MADE_1010005 PF00149 Calcineurin-like phosphoesterase MADE_1010010 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MADE_1010015 PF09190 DALR domain MADE_1010015 PF01406 tRNA synthetases class I (C) catalytic domain MADE_1010040 PF01476 LysM domain MADE_1010040 PF01464 Transglycosylase SLT domain MADE_1010045 PF16123 Hydroxyacylglutathione hydrolase C-terminus MADE_1010045 PF00753 Metallo-beta-lactamase superfamily MADE_1010050 PF08241 Methyltransferase domain MADE_1010055 PF05552 Conserved TM helix MADE_1010055 PF00924 Mechanosensitive ion channel MADE_1010060 PF09334 tRNA synthetases class I (M) MADE_1010060 PF01588 Putative tRNA binding domain MADE_1010060 PF08264 Anticodon-binding domain of tRNA MADE_1010065 PF10609 NUBPL iron-transfer P-loop NTPase MADE_1010070 PF00692 dUTPase MADE_1010075 PF00939 Sodium:sulfate symporter transmembrane region MADE_1010105 PF00132 Bacterial transferase hexapeptide (six repeats) MADE_1010110 PF00266 Aminotransferase class-V MADE_1010120 PF13185 GAF domain MADE_1010130 PF17516 ProQ C-terminal domain MADE_1010130 PF04352 ProQ/FINO family MADE_1010135 PF03572 Peptidase family S41 MADE_1010135 PF11818 C-terminal domain of tail specific protease (DUF3340) MADE_1010135 PF00595 PDZ domain MADE_1010135 PF17804 Tail specific protease N-terminal domain MADE_1010140 PF00209 Sodium:neurotransmitter symporter family MADE_1010150 PF11940 Domain of unknown function (DUF3458) Ig-like fold MADE_1010150 PF01433 Peptidase family M1 domain MADE_1010150 PF17432 Domain of unknown function (DUF3458_C) ARM repeats MADE_1010165 PF05088 Bacterial NAD-glutamate dehydrogenase MADE_1010170 PF01180 Dihydroorotate dehydrogenase MADE_1010175 PF01170 Putative RNA methylase family UPF0020 MADE_1010175 PF10672 S-adenosylmethionine-dependent methyltransferase MADE_1010175 PF02926 THUMP domain MADE_1010195 PF03441 FAD binding domain of DNA photolyase MADE_1010195 PF00875 DNA photolyase MADE_1010200 PF00875 DNA photolyase MADE_1010200 PF03441 FAD binding domain of DNA photolyase MADE_1010205 PF00875 DNA photolyase MADE_1010205 PF03441 FAD binding domain of DNA photolyase MADE_1010210 PF03441 FAD binding domain of DNA photolyase MADE_1010210 PF00875 DNA photolyase MADE_1010215 PF04244 Deoxyribodipyrimidine photo-lyase-related protein MADE_1010235 PF13700 Domain of unknown function (DUF4158) MADE_1010235 PF01526 Tn3 transposase DDE domain MADE_1010250 PF13411 MerR HTH family regulatory protein MADE_1010270 PF00529 HlyD membrane-fusion protein of T1SS MADE_1010270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MADE_1010275 PF00873 AcrB/AcrD/AcrF family MADE_1010280 PF16916 Dimerisation domain of Zinc Transporter MADE_1010280 PF01545 Cation efflux family MADE_1010300 PF00873 AcrB/AcrD/AcrF family MADE_1010305 PF00593 TonB dependent receptor MADE_1010305 PF07660 Secretin and TonB N terminus short domain MADE_1010305 PF07715 TonB-dependent Receptor Plug Domain MADE_1010340 PF13411 MerR HTH family regulatory protein MADE_1010350 PF00403 Heavy-metal-associated domain MADE_1010355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MADE_1010355 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_1010355 PF00403 Heavy-metal-associated domain MADE_1010360 PF02899 Phage integrase, N-terminal SAM-like domain MADE_1010360 PF00589 Phage integrase family MADE_1010370 PF01219 Prokaryotic diacylglycerol kinase MADE_1010390 PF01645 Conserved region in glutamate synthase MADE_1010400 PF00210 Ferritin-like domain MADE_1010410 PF00115 Cytochrome C and Quinol oxidase polypeptide I MADE_1010445 PF00403 Heavy-metal-associated domain MADE_1010460 PF00027 Cyclic nucleotide-binding domain MADE_1010460 PF13545 Crp-like helix-turn-helix domain MADE_1010465 PF00582 Universal stress protein family MADE_1010470 PF01171 PP-loop family MADE_1010475 PF01734 Patatin-like phospholipase MADE_1010500 PF01810 LysE type translocator MADE_1010505 PF02146 Sir2 family MADE_1010510 PF00581 Rhodanese-like domain MADE_1010515 PF08534 Redoxin MADE_1010545 PF01527 Transposase MADE_1010550 PF13276 HTH-like domain MADE_1010550 PF13333 Integrase core domain MADE_1010550 PF00665 Integrase core domain MADE_1010570 PF00589 Phage integrase family MADE_1010570 PF13356 Arm DNA-binding domain MADE_1010575 PF01541 GIY-YIG catalytic domain MADE_1010575 PF02151 UvrB/uvrC motif MADE_1010575 PF08459 UvrC Helix-hairpin-helix N-terminal MADE_1010620 PF00155 Aminotransferase class I and II MADE_1010640 PF07681 DoxX MADE_1010645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1010645 PF03466 LysR substrate binding domain MADE_1010675 PF04358 DsrC like protein MADE_1010690 PF00593 TonB dependent receptor MADE_1010690 PF07715 TonB-dependent Receptor Plug Domain MADE_1010695 PF02403 Seryl-tRNA synthetase N-terminal domain MADE_1010695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MADE_1010700 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MADE_1010705 PF00004 ATPase family associated with various cellular activities (AAA) MADE_1010705 PF16193 AAA C-terminal domain MADE_1010705 PF12002 MgsA AAA+ ATPase C terminal MADE_1010710 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MADE_1010710 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MADE_1010715 PF01037 Lrp/AsnC ligand binding domain MADE_1010725 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MADE_1010730 PF18073 Rubredoxin metal binding domain MADE_1010770 PF02867 Ribonucleotide reductase, barrel domain MADE_1010770 PF03477 ATP cone domain MADE_1010770 PF00317 Ribonucleotide reductase, all-alpha domain MADE_1010775 PF00268 Ribonucleotide reductase, small chain MADE_1010780 PF00111 2Fe-2S iron-sulfur cluster binding domain MADE_1010795 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_1010795 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MADE_1010800 PF00990 Diguanylate cyclase, GGDEF domain MADE_1010800 PF00563 EAL domain MADE_1010800 PF03707 Bacterial signalling protein N terminal repeat MADE_1010805 PF00892 EamA-like transporter family MADE_1010810 PF01259 SAICAR synthetase MADE_1010815 PF06804 NlpB/DapX lipoprotein MADE_1010835 PF00578 AhpC/TSA family MADE_1010840 PF01594 AI-2E family transporter MADE_1010845 PF01435 Peptidase family M48 MADE_1010855 PF03960 ArsC family MADE_1010860 PF03358 NADPH-dependent FMN reductase MADE_1010870 PF00308 Bacterial dnaA protein MADE_1010880 PF00586 AIR synthase related protein, N-terminal domain MADE_1010880 PF02769 AIR synthase related protein, C-terminal domain MADE_1010885 PF00551 Formyl transferase MADE_1010895 PF02770 Acyl-CoA dehydrogenase, middle domain MADE_1010895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MADE_1010895 PF09317 Domain of unknown function (DUF1974) MADE_1010895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MADE_1010905 PF00072 Response regulator receiver domain MADE_1010905 PF00196 Bacterial regulatory proteins, luxR family MADE_1010910 PF13649 Methyltransferase domain MADE_1010915 PF08003 Protein of unknown function (DUF1698) MADE_1010920 PF00485 Phosphoribulokinase / Uridine kinase family MADE_1010935 PF00128 Alpha amylase, catalytic domain MADE_1010940 PF13419 Haloacid dehalogenase-like hydrolase MADE_1010945 PF00994 Probable molybdopterin binding domain MADE_1010945 PF03454 MoeA C-terminal region (domain IV) MADE_1010945 PF03453 MoeA N-terminal region (domain I and II) MADE_1010950 PF01554 MatE MADE_1010965 PF17862 AAA+ lid domain MADE_1010965 PF01434 Peptidase family M41 MADE_1010965 PF00004 ATPase family associated with various cellular activities (AAA) MADE_1010970 PF00291 Pyridoxal-phosphate dependent enzyme MADE_1010985 PF01548 Transposase MADE_1010985 PF02371 Transposase IS116/IS110/IS902 family MADE_1011010 PF01548 Transposase MADE_1011010 PF02371 Transposase IS116/IS110/IS902 family MADE_1011030 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system MADE_1011085 PF02567 Phenazine biosynthesis-like protein MADE_1011350 PF03458 UPF0126 domain MADE_1011475 PF04138 GtrA-like protein MADE_1011480 PF00535 Glycosyl transferase family 2 MADE_1011485 PF00535 Glycosyl transferase family 2 MADE_1011495 PF03050 Transposase IS66 family MADE_1011495 PF13007 Transposase C of IS166 homeodomain MADE_1011495 PF13005 zinc-finger binding domain of transposase IS66 MADE_1011495 PF13817 IS66 C-terminal element MADE_1011500 PF01757 Acyltransferase family MADE_1011525 PF01022 Bacterial regulatory protein, arsR family MADE_1011535 PF03466 LysR substrate binding domain MADE_1011535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1011545 PF00158 Sigma-54 interaction domain MADE_1011545 PF00072 Response regulator receiver domain MADE_1011545 PF02954 Bacterial regulatory protein, Fis family MADE_1011555 PF00512 His Kinase A (phospho-acceptor) domain MADE_1011555 PF00360 Phytochrome region MADE_1011555 PF08446 PAS fold MADE_1011555 PF01590 GAF domain MADE_1011555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1011560 PF00072 Response regulator receiver domain MADE_1011565 PF00072 Response regulator receiver domain MADE_1011565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1011565 PF09308 LuxQ, periplasmic MADE_1011565 PF00512 His Kinase A (phospho-acceptor) domain MADE_1011595 PF07043 Protein of unknown function (DUF1328) MADE_1011615 PF07023 Protein of unknown function (DUF1315) MADE_1011630 PF01235 Sodium:alanine symporter family MADE_1011635 PF18027 Cytosolic carboxypeptidase N-terminal domain MADE_1011635 PF00246 Zinc carboxypeptidase MADE_1011640 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MADE_1011640 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MADE_1011650 PF01641 SelR domain MADE_1011655 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain MADE_1011655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MADE_1011660 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MADE_1011660 PF00128 Alpha amylase, catalytic domain MADE_1011665 PF00128 Alpha amylase, catalytic domain MADE_1011665 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MADE_1011665 PF02806 Alpha amylase, C-terminal all-beta domain MADE_1011670 PF02446 4-alpha-glucanotransferase MADE_1011675 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MADE_1011675 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MADE_1011680 PF01263 Aldose 1-epimerase MADE_1011685 PF01081 KDPG and KHG aldolase MADE_1011690 PF02685 Glucokinase MADE_1011695 PF00920 Dehydratase family MADE_1011700 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MADE_1011705 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain MADE_1011705 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain MADE_1011710 PF01418 Helix-turn-helix domain, rpiR family MADE_1011710 PF01380 SIS domain MADE_1011715 PF02887 Pyruvate kinase, alpha/beta domain MADE_1011715 PF00224 Pyruvate kinase, barrel domain MADE_1011720 PF01048 Phosphorylase superfamily MADE_1011730 PF08787 Alginate lyase MADE_1011735 PF04972 BON domain MADE_1011765 PF09347 Domain of unknown function (DUF1989) MADE_1011780 PF00512 His Kinase A (phospho-acceptor) domain MADE_1011780 PF01627 Hpt domain MADE_1011780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1011780 PF00672 HAMP domain MADE_1011780 PF00072 Response regulator receiver domain MADE_1011780 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MADE_1011800 PF04231 Endonuclease I MADE_1011805 PF00672 HAMP domain MADE_1011805 PF02743 Cache domain MADE_1011805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1011820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1011820 PF03466 LysR substrate binding domain MADE_1011825 PF00465 Iron-containing alcohol dehydrogenase MADE_1011830 PF00990 Diguanylate cyclase, GGDEF domain MADE_1011830 PF00563 EAL domain MADE_1011830 PF03707 Bacterial signalling protein N terminal repeat MADE_1011840 PF11849 Domain of unknown function (DUF3369) MADE_1011845 PF00512 His Kinase A (phospho-acceptor) domain MADE_1011845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1011845 PF00497 Bacterial extracellular solute-binding proteins, family 3 MADE_1011855 PF00589 Phage integrase family MADE_1011880 PF00239 Resolvase, N terminal domain MADE_1011880 PF02796 Helix-turn-helix domain of resolvase MADE_1011885 PF05036 Sporulation related domain MADE_1011890 PF02875 Mur ligase family, glutamate ligase domain MADE_1011890 PF08245 Mur ligase middle domain MADE_1011895 PF01039 Carboxyl transferase domain MADE_1011895 PF17848 Acetyl-coA carboxylase zinc finger domain MADE_1011905 PF01416 tRNA pseudouridine synthase MADE_1011915 PF02774 Semialdehyde dehydrogenase, dimerisation domain MADE_1011915 PF01118 Semialdehyde dehydrogenase, NAD binding domain MADE_1011920 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MADE_1011920 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MADE_1011920 PF11890 Domain of unknown function (DUF3410) MADE_1011925 PF00596 Class II Aldolase and Adducin N-terminal domain MADE_1011940 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH MADE_1011945 PF00144 Beta-lactamase MADE_1011950 PF00109 Beta-ketoacyl synthase, N-terminal domain MADE_1011950 PF02801 Beta-ketoacyl synthase, C-terminal domain MADE_1011955 PF13193 AMP-binding enzyme C-terminal domain MADE_1011955 PF00501 AMP-binding enzyme MADE_1011970 PF01266 FAD dependent oxidoreductase MADE_1011970 PF05430 S-adenosyl-L-methionine-dependent methyltransferase MADE_1012005 PF13411 MerR HTH family regulatory protein MADE_1012010 PF00107 Zinc-binding dehydrogenase MADE_1012010 PF08240 Alcohol dehydrogenase GroES-like domain MADE_1012015 PF02371 Transposase IS116/IS110/IS902 family MADE_1012015 PF01548 Transposase MADE_1012035 PF00005 ABC transporter MADE_1012040 PF02667 Short chain fatty acid transporter MADE_1012045 PF00512 His Kinase A (phospho-acceptor) domain MADE_1012045 PF01627 Hpt domain MADE_1012045 PF00072 Response regulator receiver domain MADE_1012045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1012045 PF00672 HAMP domain MADE_1012045 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MADE_1012050 PF02627 Carboxymuconolactone decarboxylase family MADE_1012055 PF00675 Insulinase (Peptidase family M16) MADE_1012055 PF05193 Peptidase M16 inactive domain MADE_1012070 PF04315 Elongation factor P hydroxylase MADE_1012100 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MADE_1012100 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_1012105 PF00378 Enoyl-CoA hydratase/isomerase MADE_1012110 PF02909 Tetracyclin repressor-like, C-terminal domain MADE_1012110 PF00440 Bacterial regulatory proteins, tetR family MADE_1012115 PF05199 GMC oxidoreductase MADE_1012115 PF00732 GMC oxidoreductase MADE_1012125 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain MADE_1012125 PF06974 Protein of unknown function (DUF1298) MADE_1012135 PF04286 Protein of unknown function (DUF445) MADE_1012155 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain MADE_1012155 PF00326 Prolyl oligopeptidase family MADE_1012160 PF07840 FadR C-terminal domain MADE_1012160 PF00392 Bacterial regulatory proteins, gntR family MADE_1012165 PF06450 Bacterial Na+/H+ antiporter B (NhaB) MADE_1012170 PF02600 Disulfide bond formation protein DsbB MADE_1012175 PF13302 Acetyltransferase (GNAT) domain MADE_1012185 PF03692 Putative zinc- or iron-chelating domain MADE_1012190 PF01557 Fumarylacetoacetate (FAA) hydrolase family MADE_1012200 PF05166 YcgL domain MADE_1012205 PF00570 HRDC domain MADE_1012205 PF01612 3'-5' exonuclease MADE_1012210 PF13193 AMP-binding enzyme C-terminal domain MADE_1012210 PF00501 AMP-binding enzyme MADE_1012215 PF12697 Alpha/beta hydrolase family MADE_1012230 PF00814 Glycoprotease family MADE_1012235 PF06733 DEAD_2 MADE_1012235 PF13307 Helicase C-terminal domain MADE_1012260 PF00128 Alpha amylase, catalytic domain MADE_1012285 PF07715 TonB-dependent Receptor Plug Domain MADE_1012285 PF00593 TonB dependent receptor MADE_1012295 PF08029 HisG, C-terminal domain MADE_1012295 PF01634 ATP phosphoribosyltransferase MADE_1012300 PF00815 Histidinol dehydrogenase MADE_1012305 PF00155 Aminotransferase class I and II MADE_1012310 PF00475 Imidazoleglycerol-phosphate dehydratase MADE_1012315 PF00117 Glutamine amidotransferase class-I MADE_1012320 PF00977 Histidine biosynthesis protein MADE_1012345 PF01479 S4 domain MADE_1012345 PF00849 RNA pseudouridylate synthase MADE_1012350 PF13525 Outer membrane lipoprotein MADE_1012360 PF04542 Sigma-70 region 2 MADE_1012360 PF04545 Sigma-70, region 4 MADE_1012375 PF00106 short chain dehydrogenase MADE_1012395 PF00691 OmpA family MADE_1012395 PF13677 Membrane MotB of proton-channel complex MotA/MotB MADE_1012400 PF01618 MotA/TolQ/ExbB proton channel family MADE_1012405 PF02609 Exonuclease VII small subunit MADE_1012410 PF00348 Polyprenyl synthetase MADE_1012415 PF02780 Transketolase, C-terminal domain MADE_1012415 PF02779 Transketolase, pyrimidine binding domain MADE_1012415 PF13292 1-deoxy-D-xylulose-5-phosphate synthase MADE_1012420 PF04608 Phosphatidylglycerophosphatase A MADE_1012425 PF02769 AIR synthase related protein, C-terminal domain MADE_1012425 PF00586 AIR synthase related protein, N-terminal domain MADE_1012430 PF01029 NusB family MADE_1012435 PF00885 6,7-dimethyl-8-ribityllumazine synthase MADE_1012440 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MADE_1012440 PF00925 GTP cyclohydrolase II MADE_1012445 PF00677 Lumazine binding domain MADE_1012450 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MADE_1012450 PF01872 RibD C-terminal domain MADE_1012455 PF03477 ATP cone domain MADE_1012460 PF00464 Serine hydroxymethyltransferase MADE_1012470 PF12848 ABC transporter MADE_1012470 PF00005 ABC transporter MADE_1012480 PF18073 Rubredoxin metal binding domain MADE_1012490 PF18429 Domain of unknown function (DUF5609) MADE_1012500 PF01026 TatD related DNase MADE_1012505 PF01243 Pyridoxamine 5'-phosphate oxidase MADE_1012505 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MADE_1012510 PF01926 50S ribosome-binding GTPase MADE_1012510 PF07650 KH domain MADE_1012515 PF14622 Ribonuclease-III-like MADE_1012515 PF00035 Double-stranded RNA binding motif MADE_1012520 PF10502 Signal peptidase, peptidase S26 MADE_1012525 PF06421 GTP-binding protein LepA C-terminus MADE_1012525 PF03144 Elongation factor Tu domain 2 MADE_1012525 PF00009 Elongation factor Tu GTP binding domain MADE_1012525 PF00679 Elongation factor G C-terminus MADE_1012535 PF03888 MucB/RseB N-terminal domain MADE_1012535 PF17188 MucB/RseB C-terminal domain MADE_1012545 PF08281 Sigma-70, region 4 MADE_1012545 PF04542 Sigma-70 region 2 MADE_1012550 PF00890 FAD binding domain MADE_1012550 PF02910 Fumarate reductase flavoprotein C-term MADE_1012565 PF03937 Flavinator of succinate dehydrogenase MADE_1012575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MADE_1012580 PF00543 Nitrogen regulatory protein P-II MADE_1012585 PF02540 NAD synthase MADE_1012620 PF00114 Pilin (bacterial filament) MADE_1012620 PF07963 Prokaryotic N-terminal methylation motif MADE_1012645 PF02401 LytB protein MADE_1012650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MADE_1012655 PF01252 Signal peptidase (SPase) II MADE_1012670 PF06574 FAD synthetase MADE_1012670 PF01687 Riboflavin kinase MADE_1012675 PF03023 Lipid II flippase MurJ MADE_1012680 PF01649 Ribosomal protein S20 MADE_1012695 PF00106 short chain dehydrogenase MADE_1012700 PF01758 Sodium Bile acid symporter family MADE_1012720 PF01546 Peptidase family M20/M25/M40 MADE_1012720 PF07687 Peptidase dimerisation domain MADE_1012730 PF13145 PPIC-type PPIASE domain MADE_1012735 PF00216 Bacterial DNA-binding protein MADE_1012745 PF02190 ATP-dependent protease La (LON) substrate-binding domain MADE_1012745 PF00004 ATPase family associated with various cellular activities (AAA) MADE_1012745 PF05362 Lon protease (S16) C-terminal proteolytic domain MADE_1012750 PF10431 C-terminal, D2-small domain, of ClpB protein MADE_1012750 PF07724 AAA domain (Cdc48 subfamily) MADE_1012750 PF06689 ClpX C4-type zinc finger MADE_1012755 PF00574 Clp protease MADE_1012760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MADE_1012760 PF05698 Bacterial trigger factor protein (TF) C-terminus MADE_1012760 PF05697 Bacterial trigger factor protein (TF) MADE_1012865 PF04055 Radical SAM superfamily MADE_1012870 PF00334 Nucleoside diphosphate kinase MADE_1012875 PF02657 Fe-S metabolism associated domain MADE_1012880 PF01883 Iron-sulfur cluster assembly protein MADE_1012885 PF01521 Iron-sulphur cluster biosynthesis MADE_1012890 PF00266 Aminotransferase class-V MADE_1012895 PF01458 Uncharacterized protein family (UPF0051) MADE_1012900 PF00005 ABC transporter MADE_1012905 PF01458 Uncharacterized protein family (UPF0051) MADE_1012910 PF00266 Aminotransferase class-V MADE_1012915 PF02082 Transcriptional regulator MADE_1012920 PF00743 Flavin-binding monooxygenase-like MADE_1012925 PF00132 Bacterial transferase hexapeptide (six repeats) MADE_1012925 PF06426 Serine acetyltransferase, N-terminal MADE_1012930 PF00588 SpoU rRNA Methylase family MADE_1012935 PF00459 Inositol monophosphatase family MADE_1012950 PF07549 SecD/SecF GG Motif MADE_1012950 PF02355 Protein export membrane protein MADE_1012955 PF02355 Protein export membrane protein MADE_1012955 PF07549 SecD/SecF GG Motif MADE_1012955 PF13721 SecD export protein N-terminal TM region MADE_1012960 PF02699 Preprotein translocase subunit MADE_1012970 PF02547 Queuosine biosynthesis protein MADE_1012985 PF04012 PspA/IM30 family MADE_1012990 PF07885 Ion channel MADE_1013005 PF06693 Protein of unknown function (DUF1190) MADE_1013010 PF03738 Glutathionylspermidine synthase preATP-grasp MADE_1013025 PF00005 ABC transporter MADE_1013040 PF04960 Glutaminase MADE_1013045 PF00245 Alkaline phosphatase MADE_1013050 PF00072 Response regulator receiver domain MADE_1013055 PF00463 Isocitrate lyase family MADE_1013060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1013060 PF03466 LysR substrate binding domain MADE_1013065 PF01274 Malate synthase MADE_1013075 PF01370 NAD dependent epimerase/dehydratase family MADE_1013080 PF02913 FAD linked oxidases, C-terminal domain MADE_1013080 PF01565 FAD binding domain MADE_1013170 PF13537 Glutamine amidotransferase domain MADE_1013170 PF00733 Asparagine synthase MADE_1013190 PF00534 Glycosyl transferases group 1 MADE_1013190 PF13439 Glycosyltransferase Family 4 MADE_1013200 PF14667 Polysaccharide biosynthesis C-terminal domain MADE_1013225 PF01226 Formate/nitrite transporter MADE_1013230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1013230 PF00672 HAMP domain MADE_1013240 PF00593 TonB dependent receptor MADE_1013240 PF07715 TonB-dependent Receptor Plug Domain MADE_1013250 PF05191 Adenylate kinase, active site lid MADE_1013255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1013255 PF00183 Hsp90 protein MADE_1013260 PF13662 Toprim domain MADE_1013260 PF02132 RecR protein MADE_1013270 PF00990 Diguanylate cyclase, GGDEF domain MADE_1013270 PF00563 EAL domain MADE_1013270 PF03707 Bacterial signalling protein N terminal repeat MADE_1013275 PF08446 PAS fold MADE_1013275 PF01590 GAF domain MADE_1013275 PF00360 Phytochrome region MADE_1013275 PF00512 His Kinase A (phospho-acceptor) domain MADE_1013275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1013280 PF02575 YbaB/EbfC DNA-binding family MADE_1013285 PF12169 DNA polymerase III subunits gamma and tau domain III MADE_1013285 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding MADE_1013285 PF12170 DNA polymerase III tau subunit V interacting with alpha MADE_1013290 PF00156 Phosphoribosyl transferase domain MADE_1013300 PF05114 Protein of unknown function (DUF692) MADE_1013320 PF01590 GAF domain MADE_1013320 PF00563 EAL domain MADE_1013320 PF00360 Phytochrome region MADE_1013320 PF00990 Diguanylate cyclase, GGDEF domain MADE_1013330 PF12697 Alpha/beta hydrolase family MADE_1013340 PF00258 Flavodoxin MADE_1013345 PF00672 HAMP domain MADE_1013345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1013350 PF01475 Ferric uptake regulator family MADE_1013355 PF01063 Amino-transferase class IV MADE_1013360 PF02626 Carboxyltransferase domain, subdomain A and B MADE_1013365 PF02682 Carboxyltransferase domain, subdomain C and D MADE_1013370 PF03746 LamB/YcsF family MADE_1013375 PF13509 S1 domain MADE_1013375 PF17783 CvfB-like winged helix domain MADE_1013380 PF02566 OsmC-like protein MADE_1013385 PF13533 Biotin-lipoyl like MADE_1013390 PF00873 AcrB/AcrD/AcrF family MADE_1013395 PF00873 AcrB/AcrD/AcrF family MADE_1013410 PF00155 Aminotransferase class I and II MADE_1013420 PF01966 HD domain MADE_1013420 PF13286 Phosphohydrolase-associated domain MADE_1013425 PF00174 Oxidoreductase molybdopterin binding domain MADE_1013430 PF01794 Ferric reductase like transmembrane component MADE_1013445 PF02810 SEC-C motif MADE_1013460 PF08240 Alcohol dehydrogenase GroES-like domain MADE_1013460 PF00107 Zinc-binding dehydrogenase MADE_1013470 PF02770 Acyl-CoA dehydrogenase, middle domain MADE_1013470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MADE_1013470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MADE_1013480 PF00593 TonB dependent receptor MADE_1013480 PF07715 TonB-dependent Receptor Plug Domain MADE_1013500 PF06969 HemN C-terminal domain MADE_1013500 PF04055 Radical SAM superfamily MADE_1013505 PF03459 TOBE domain MADE_1013505 PF00005 ABC transporter MADE_1013510 PF00528 Binding-protein-dependent transport system inner membrane component MADE_1013520 PF02391 MoaE protein MADE_1013525 PF02597 ThiS family MADE_1013530 PF01967 MoaC family MADE_1013535 PF00994 Probable molybdopterin binding domain MADE_1013540 PF00899 ThiF family MADE_1013550 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system MADE_1013555 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system MADE_1013570 PF00155 Aminotransferase class I and II MADE_1013575 PF03435 Saccharopine dehydrogenase NADP binding domain MADE_1013580 PF00155 Aminotransferase class I and II MADE_1013595 PF01717 Cobalamin-independent synthase, Catalytic domain MADE_1013600 PF07715 TonB-dependent Receptor Plug Domain MADE_1013600 PF00593 TonB dependent receptor MADE_1013610 PF00892 EamA-like transporter family MADE_1013625 PF13538 UvrD-like helicase C-terminal domain MADE_1013630 PF13361 UvrD-like helicase C-terminal domain MADE_1013630 PF12705 PD-(D/E)XK nuclease superfamily MADE_1013630 PF00580 UvrD/REP helicase N-terminal domain MADE_1013635 PF17946 RecC C-terminal domain MADE_1013650 PF00501 AMP-binding enzyme MADE_1013655 PF00990 Diguanylate cyclase, GGDEF domain MADE_1013655 PF01590 GAF domain MADE_1013655 PF00563 EAL domain MADE_1013655 PF00360 Phytochrome region MADE_1013660 PF17770 Ribonuclease J C-terminal domain MADE_1013660 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MADE_1013660 PF12706 Beta-lactamase superfamily domain MADE_1013675 PF03466 LysR substrate binding domain MADE_1013675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1013680 PF02525 Flavodoxin-like fold MADE_1013690 PF01053 Cys/Met metabolism PLP-dependent enzyme MADE_1013705 PF00155 Aminotransferase class I and II MADE_1013710 PF10459 Peptidase S46 MADE_1013715 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 MADE_1013730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MADE_1013730 PF12806 Acetyl-CoA dehydrogenase C-terminal like MADE_1013730 PF02770 Acyl-CoA dehydrogenase, middle domain MADE_1013730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MADE_1013735 PF12833 Helix-turn-helix domain MADE_1013735 PF07883 Cupin domain MADE_1013740 PF00593 TonB dependent receptor MADE_1013740 PF07715 TonB-dependent Receptor Plug Domain MADE_1013750 PF00326 Prolyl oligopeptidase family MADE_1013750 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain MADE_1013755 PF00873 AcrB/AcrD/AcrF family MADE_1013760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MADE_1013770 PF01012 Electron transfer flavoprotein domain MADE_1013770 PF00766 Electron transfer flavoprotein FAD-binding domain MADE_1013775 PF01012 Electron transfer flavoprotein domain MADE_1013785 PF00816 H-NS histone family MADE_1013795 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MADE_1013795 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MADE_1013795 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MADE_1013800 PF16363 GDP-mannose 4,6 dehydratase MADE_1013805 PF04321 RmlD substrate binding domain MADE_1013810 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase MADE_1013815 PF00483 Nucleotidyl transferase MADE_1013825 PF00535 Glycosyl transferase family 2 MADE_1013825 PF02709 N-terminal domain of galactosyltransferase MADE_1013860 PF13276 HTH-like domain MADE_1013860 PF13683 Integrase core domain MADE_1013895 PF00884 Sulfatase MADE_1013895 PF16385 Domain of unknown function MADE_1013910 PF00535 Glycosyl transferase family 2 MADE_1013915 PF01050 Mannose-6-phosphate isomerase MADE_1013915 PF00483 Nucleotidyl transferase MADE_1013920 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MADE_1013920 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MADE_1013920 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MADE_1013920 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MADE_1013925 PF00669 Bacterial flagellin N-terminal helical region MADE_1013925 PF00700 Bacterial flagellin C-terminal helical region MADE_1013930 PF01196 Ribosomal protein L17 MADE_1013935 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MADE_1013935 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MADE_1013935 PF01000 RNA polymerase Rpb3/RpoA insert domain MADE_1013940 PF00163 Ribosomal protein S4/S9 N-terminal domain MADE_1013940 PF01479 S4 domain MADE_1013945 PF00411 Ribosomal protein S11 MADE_1013950 PF00416 Ribosomal protein S13/S18 MADE_1013955 PF00444 Ribosomal protein L36 MADE_1013960 PF00344 SecY translocase MADE_1013965 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MADE_1013970 PF00327 Ribosomal protein L30p/L7e MADE_1013975 PF03719 Ribosomal protein S5, C-terminal domain MADE_1013975 PF00333 Ribosomal protein S5, N-terminal domain MADE_1013980 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast MADE_1013985 PF00347 Ribosomal protein L6 MADE_1013990 PF00410 Ribosomal protein S8 MADE_1013995 PF00253 Ribosomal protein S14p/S29e MADE_1014000 PF00281 Ribosomal protein L5 MADE_1014000 PF00673 ribosomal L5P family C-terminus MADE_1014005 PF00467 KOW motif MADE_1014005 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 MADE_1014010 PF00238 Ribosomal protein L14p/L23e MADE_1014030 PF18158 Adaptive response protein AidB N-terminal domain MADE_1014030 PF02770 Acyl-CoA dehydrogenase, middle domain MADE_1014030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MADE_1014060 PF00486 Transcriptional regulatory protein, C terminal MADE_1014060 PF00072 Response regulator receiver domain MADE_1014065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1014065 PF00672 HAMP domain MADE_1014065 PF00512 His Kinase A (phospho-acceptor) domain MADE_1014065 PF16527 Two-component sensor protein CpxA, periplasmic domain MADE_1014075 PF03965 Penicillinase repressor MADE_1014100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MADE_1014115 PF00111 2Fe-2S iron-sulfur cluster binding domain MADE_1014115 PF01799 [2Fe-2S] binding domain MADE_1014120 PF03450 CO dehydrogenase flavoprotein C-terminal domain MADE_1014120 PF00941 FAD binding domain in molybdopterin dehydrogenase MADE_1014125 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MADE_1014125 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MADE_1014150 PF00106 short chain dehydrogenase MADE_1014155 PF01965 DJ-1/PfpI family MADE_1014160 PF03631 Virulence factor BrkB MADE_1014170 PF07152 YaeQ protein MADE_1014200 PF07690 Major Facilitator Superfamily MADE_1014215 PF00270 DEAD/DEAH box helicase MADE_1014215 PF00271 Helicase conserved C-terminal domain MADE_1014215 PF09382 RQC domain MADE_1014215 PF16124 RecQ zinc-binding MADE_1014215 PF00570 HRDC domain MADE_1014235 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MADE_1014235 PF01627 Hpt domain MADE_1014235 PF00512 His Kinase A (phospho-acceptor) domain MADE_1014235 PF00672 HAMP domain MADE_1014235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1014235 PF00072 Response regulator receiver domain MADE_1014245 PF01590 GAF domain MADE_1014245 PF00512 His Kinase A (phospho-acceptor) domain MADE_1014245 PF00360 Phytochrome region MADE_1014245 PF08446 PAS fold MADE_1014245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1014250 PF07995 Glucose / Sorbosone dehydrogenase MADE_1014265 PF02492 CobW/HypB/UreG, nucleotide-binding domain MADE_1014270 PF01730 UreF MADE_1014275 PF02814 UreE urease accessory protein, N-terminal domain MADE_1014275 PF05194 UreE urease accessory protein, C-terminal domain MADE_1014280 PF01979 Amidohydrolase family MADE_1014280 PF00449 Urease alpha-subunit, N-terminal domain MADE_1014285 PF00699 Urease beta subunit MADE_1014290 PF00547 Urease, gamma subunit MADE_1014295 PF01774 UreD urease accessory protein MADE_1014300 PF00005 ABC transporter MADE_1014305 PF00005 ABC transporter MADE_1014305 PF12399 Branched-chain amino acid ATP-binding cassette transporter MADE_1014315 PF02653 Branched-chain amino acid transport system / permease component MADE_1014330 PF00672 HAMP domain MADE_1014330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1014330 PF00512 His Kinase A (phospho-acceptor) domain MADE_1014330 PF01627 Hpt domain MADE_1014330 PF17149 Periplasmic sensor domain found in signal transduction proteins MADE_1014330 PF00072 Response regulator receiver domain MADE_1014335 PF00072 Response regulator receiver domain MADE_1014335 PF00486 Transcriptional regulatory protein, C terminal MADE_1014340 PF02661 Fic/DOC family MADE_1014340 PF12728 Helix-turn-helix domain MADE_1014380 PF01867 CRISPR associated protein Cas1 MADE_1014395 PF09704 CRISPR-associated protein (Cas_Cas5) MADE_1014415 PF18019 HD domain MADE_1014415 PF00271 Helicase conserved C-terminal domain MADE_1014415 PF00270 DEAD/DEAH box helicase MADE_1014430 PF01597 Glycine cleavage H-protein MADE_1014435 PF08669 Glycine cleavage T-protein C-terminal barrel domain MADE_1014435 PF01571 Aminomethyltransferase folate-binding domain MADE_1014440 PF01979 Amidohydrolase family MADE_1014445 PF01869 BadF/BadG/BcrA/BcrD ATPase family MADE_1014450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1014450 PF03466 LysR substrate binding domain MADE_1014455 PF02652 L-lactate permease MADE_1014465 PF00557 Metallopeptidase family M24 MADE_1014465 PF01321 Creatinase/Prolidase N-terminal domain MADE_1014480 PF01494 FAD binding domain MADE_1014485 PF01494 FAD binding domain MADE_1014490 PF05195 Aminopeptidase P, N-terminal domain MADE_1014490 PF00557 Metallopeptidase family M24 MADE_1014495 PF03695 Uncharacterised protein family (UPF0149) MADE_1014885 PF00589 Phage integrase family MADE_1014885 PF12167 Arm DNA-binding domain MADE_1014890 PF00294 pfkB family carbohydrate kinase MADE_1014895 PF01156 Inosine-uridine preferring nucleoside hydrolase MADE_1014900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1014900 PF00497 Bacterial extracellular solute-binding proteins, family 3 MADE_1014900 PF00072 Response regulator receiver domain MADE_1014900 PF00512 His Kinase A (phospho-acceptor) domain MADE_1014900 PF01627 Hpt domain MADE_1014900 PF00989 PAS fold MADE_1014905 PF01812 5-formyltetrahydrofolate cyclo-ligase family MADE_1014910 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MADE_1014915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MADE_1014915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MADE_1014915 PF01842 ACT domain MADE_1014935 PF06945 Protein of unknown function (DUF1289) MADE_1014945 PF00873 AcrB/AcrD/AcrF family MADE_1014950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MADE_1014955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1014955 PF03466 LysR substrate binding domain MADE_1014970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MADE_1014970 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_1014975 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MADE_1014975 PF02817 e3 binding domain MADE_1014975 PF00364 Biotin-requiring enzyme MADE_1014980 PF00456 Transketolase, thiamine diphosphate binding domain MADE_1014980 PF17831 Pyruvate dehydrogenase E1 component middle domain MADE_1014985 PF07729 FCD domain MADE_1014985 PF00392 Bacterial regulatory proteins, gntR family MADE_1014995 PF01510 N-acetylmuramoyl-L-alanine amidase MADE_1015005 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain MADE_1015005 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain MADE_1015010 PF07963 Prokaryotic N-terminal methylation motif MADE_1015010 PF00114 Pilin (bacterial filament) MADE_1015015 PF00482 Type II secretion system (T2SS), protein F MADE_1015020 PF01478 Type IV leader peptidase family MADE_1015020 PF06750 Bacterial Peptidase A24 N-terminal domain MADE_1015035 PF07072 Cell division protein MADE_1015045 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family MADE_1015050 PF00672 HAMP domain MADE_1015050 PF02743 Cache domain MADE_1015050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1015055 PF00072 Response regulator receiver domain MADE_1015055 PF00196 Bacterial regulatory proteins, luxR family MADE_1015060 PF13614 AAA domain MADE_1015070 PF02895 Signal transducing histidine kinase, homodimeric domain MADE_1015070 PF07194 P2 response regulator binding domain MADE_1015070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1015070 PF01584 CheW-like domain MADE_1015070 PF01627 Hpt domain MADE_1015075 PF00072 Response regulator receiver domain MADE_1015080 PF01739 CheR methyltransferase, SAM binding domain MADE_1015080 PF03705 CheR methyltransferase, all-alpha domain MADE_1015090 PF01339 CheB methylesterase MADE_1015090 PF00072 Response regulator receiver domain MADE_1015095 PF01584 CheW-like domain MADE_1015100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1015100 PF00672 HAMP domain MADE_1015100 PF02743 Cache domain MADE_1015105 PF00293 NUDIX domain MADE_1015110 PF07517 SecA DEAD-like domain MADE_1015110 PF02810 SEC-C motif MADE_1015110 PF01043 SecA preprotein cross-linking domain MADE_1015110 PF07516 SecA Wing and Scaffold domain MADE_1015115 PF08525 Opacity-associated protein A N-terminal motif MADE_1015115 PF01551 Peptidase family M23 MADE_1015115 PF01476 LysM domain MADE_1015120 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase MADE_1015125 PF12327 FtsZ family, C-terminal domain MADE_1015125 PF00091 Tubulin/FtsZ family, GTPase domain MADE_1015140 PF01820 D-ala D-ala ligase N-terminus MADE_1015140 PF07478 D-ala D-ala ligase C-terminus MADE_1015145 PF01225 Mur ligase family, catalytic domain MADE_1015145 PF08245 Mur ligase middle domain MADE_1015145 PF02875 Mur ligase family, glutamate ligase domain MADE_1015150 PF03033 Glycosyltransferase family 28 N-terminal domain MADE_1015150 PF04101 Glycosyltransferase family 28 C-terminal domain MADE_1015155 PF01098 Cell cycle protein MADE_1015160 PF08245 Mur ligase middle domain MADE_1015160 PF02875 Mur ligase family, glutamate ligase domain MADE_1015165 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 MADE_1015165 PF00953 Glycosyl transferase family 4 MADE_1015170 PF01225 Mur ligase family, catalytic domain MADE_1015170 PF02875 Mur ligase family, glutamate ligase domain MADE_1015170 PF08245 Mur ligase middle domain MADE_1015175 PF08245 Mur ligase middle domain MADE_1015175 PF01225 Mur ligase family, catalytic domain MADE_1015175 PF02875 Mur ligase family, glutamate ligase domain MADE_1015180 PF00905 Penicillin binding protein transpeptidase domain MADE_1015180 PF03717 Penicillin-binding Protein dimerisation domain MADE_1015185 PF04999 Cell division protein FtsL MADE_1015190 PF01795 MraW methylase family MADE_1015195 PF02381 MraZ protein, putative antitoxin-like MADE_1015250 PF08534 Redoxin MADE_1015250 PF00462 Glutaredoxin MADE_1015255 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MADE_1015265 PF00990 Diguanylate cyclase, GGDEF domain MADE_1015265 PF17158 Membrane-associated sensor, integral membrane domain MADE_1015275 PF00072 Response regulator receiver domain MADE_1015275 PF02954 Bacterial regulatory protein, Fis family MADE_1015275 PF00158 Sigma-54 interaction domain MADE_1015280 PF00512 His Kinase A (phospho-acceptor) domain MADE_1015280 PF09456 RcsC Alpha-Beta-Loop (ABL) MADE_1015280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1015280 PF00072 Response regulator receiver domain MADE_1015285 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MADE_1015285 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MADE_1015310 PF00924 Mechanosensitive ion channel MADE_1015310 PF05552 Conserved TM helix MADE_1015315 PF04452 RNA methyltransferase MADE_1015320 PF02951 Prokaryotic glutathione synthetase, N-terminal domain MADE_1015320 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain MADE_1015325 PF02622 Uncharacterized ACR, COG1678 MADE_1015330 PF03652 Holliday junction resolvase MADE_1015340 PF00437 Type II/IV secretion system protein MADE_1015345 PF00437 Type II/IV secretion system protein MADE_1015350 PF01168 Alanine racemase, N-terminal domain MADE_1015355 PF03807 NADP oxidoreductase coenzyme F420-dependent MADE_1015355 PF14748 Pyrroline-5-carboxylate reductase dimerisation MADE_1015360 PF02325 YGGT family MADE_1015370 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MADE_1015370 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_1015385 PF02798 Glutathione S-transferase, N-terminal domain MADE_1015385 PF14834 Glutathione S-transferase, C-terminal domain MADE_1015390 PF00080 Copper/zinc superoxide dismutase (SODC) MADE_1015395 PF02566 OsmC-like protein MADE_1015400 PF01625 Peptide methionine sulfoxide reductase MADE_1015415 PF03591 AzlC protein MADE_1015425 PF07690 Major Facilitator Superfamily MADE_1015430 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) MADE_1015435 PF03883 Peroxide stress protein YaaA MADE_1015450 PF00923 Transaldolase/Fructose-6-phosphate aldolase MADE_1015455 PF00342 Phosphoglucose isomerase MADE_1015465 PF03167 Uracil DNA glycosylase superfamily MADE_1015470 PF00291 Pyridoxal-phosphate dependent enzyme MADE_1015470 PF14821 Threonine synthase N terminus MADE_1015475 PF00288 GHMP kinases N terminal domain MADE_1015475 PF08544 GHMP kinases C terminal MADE_1015480 PF01842 ACT domain MADE_1015480 PF00696 Amino acid kinase family MADE_1015480 PF13840 ACT domain MADE_1015480 PF00742 Homoserine dehydrogenase MADE_1015480 PF03447 Homoserine dehydrogenase, NAD binding domain MADE_1015485 PF17755 UvrA DNA-binding domain MADE_1015490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1015490 PF03466 LysR substrate binding domain MADE_1015495 PF00107 Zinc-binding dehydrogenase MADE_1015495 PF08240 Alcohol dehydrogenase GroES-like domain MADE_1015505 PF01022 Bacterial regulatory protein, arsR family MADE_1015515 PF03358 NADPH-dependent FMN reductase MADE_1015520 PF01758 Sodium Bile acid symporter family MADE_1015525 PF00072 Response regulator receiver domain MADE_1015525 PF01339 CheB methylesterase MADE_1015530 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) MADE_1015535 PF00486 Transcriptional regulatory protein, C terminal MADE_1015535 PF00072 Response regulator receiver domain MADE_1015540 PF00672 HAMP domain MADE_1015540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1015540 PF00512 His Kinase A (phospho-acceptor) domain MADE_1015570 PF00962 Adenosine/AMP deaminase MADE_1015575 PF04116 Fatty acid hydroxylase superfamily MADE_1015600 PF03435 Saccharopine dehydrogenase NADP binding domain MADE_1015600 PF16653 Saccharopine dehydrogenase C-terminal domain MADE_1015605 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MADE_1015615 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MADE_1015620 PF04348 LppC putative lipoprotein MADE_1015625 PF02021 Uncharacterised protein family UPF0102 MADE_1015635 PF00534 Glycosyl transferases group 1 MADE_1015640 PF13580 SIS domain MADE_1015645 PF04972 BON domain MADE_1015650 PF07690 Major Facilitator Superfamily MADE_1015660 PF00893 Small Multidrug Resistance protein MADE_1015665 PF07730 Histidine kinase MADE_1015670 PF00196 Bacterial regulatory proteins, luxR family MADE_1015670 PF00072 Response regulator receiver domain MADE_1015685 PF00593 TonB dependent receptor MADE_1015685 PF07715 TonB-dependent Receptor Plug Domain MADE_1015705 PF00285 Citrate synthase, C-terminal domain MADE_1015710 PF00330 Aconitase family (aconitate hydratase) MADE_1015710 PF00694 Aconitase C-terminal domain MADE_1015715 PF04303 PrpF protein MADE_1015720 PF00990 Diguanylate cyclase, GGDEF domain MADE_1015725 PF00480 ROK family MADE_1015740 PF03588 Leucyl/phenylalanyl-tRNA protein transferase MADE_1015745 PF04376 Arginine-tRNA-protein transferase, N terminus MADE_1015745 PF04377 Arginine-tRNA-protein transferase, C terminus MADE_1015770 PF00512 His Kinase A (phospho-acceptor) domain MADE_1015770 PF00989 PAS fold MADE_1015770 PF01627 Hpt domain MADE_1015770 PF18415 Histidine kinase receptor ArcB trans-membrane domain MADE_1015770 PF00072 Response regulator receiver domain MADE_1015770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1015775 PF01510 N-acetylmuramoyl-L-alanine amidase MADE_1015790 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_1015790 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MADE_1015805 PF01048 Phosphorylase superfamily MADE_1015810 PF03186 CobD/Cbib protein MADE_1015815 PF01497 Periplasmic binding protein MADE_1015820 PF00581 Rhodanese-like domain MADE_1015835 PF01266 FAD dependent oxidoreductase MADE_1015840 PF00579 tRNA synthetases class I (W and Y) MADE_1015850 PF01551 Peptidase family M23 MADE_1015850 PF01476 LysM domain MADE_1015855 PF03702 Anhydro-N-acetylmuramic acid kinase MADE_1015860 PF07690 Major Facilitator Superfamily MADE_1015870 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MADE_1015880 PF01053 Cys/Met metabolism PLP-dependent enzyme MADE_1015885 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MADE_1015885 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MADE_1015890 PF00043 Glutathione S-transferase, C-terminal domain MADE_1015890 PF02798 Glutathione S-transferase, N-terminal domain MADE_1015895 PF01521 Iron-sulphur cluster biosynthesis MADE_1015905 PF03976 Polyphosphate kinase 2 (PPK2) MADE_1015910 PF03776 Septum formation topological specificity factor MinE MADE_1015915 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MADE_1015920 PF03775 Septum formation inhibitor MinC, C-terminal domain MADE_1015920 PF05209 Septum formation inhibitor MinC, N-terminal domain MADE_1015925 PF10415 Fumarase C C-terminus MADE_1015925 PF00206 Lyase MADE_1015930 PF00127 Copper binding proteins, plastocyanin/azurin family MADE_1015960 PF01566 Natural resistance-associated macrophage protein MADE_1015965 PF00155 Aminotransferase class I and II MADE_1015970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1015970 PF00072 Response regulator receiver domain MADE_1015970 PF13188 PAS domain MADE_1015970 PF00512 His Kinase A (phospho-acceptor) domain MADE_1015970 PF08448 PAS fold MADE_1015985 PF00120 Glutamine synthetase, catalytic domain MADE_1015985 PF03951 Glutamine synthetase, beta-Grasp domain MADE_1015995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1015995 PF00512 His Kinase A (phospho-acceptor) domain MADE_1015995 PF00989 PAS fold MADE_1016000 PF00158 Sigma-54 interaction domain MADE_1016000 PF00072 Response regulator receiver domain MADE_1016000 PF02954 Bacterial regulatory protein, Fis family MADE_1016005 PF00072 Response regulator receiver domain MADE_1016010 PF01553 Acyltransferase MADE_1016015 PF06877 Regulator of ribonuclease activity B MADE_1016025 PF00990 Diguanylate cyclase, GGDEF domain MADE_1016025 PF17158 Membrane-associated sensor, integral membrane domain MADE_1016045 PF00072 Response regulator receiver domain MADE_1016045 PF00672 HAMP domain MADE_1016045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1016045 PF00512 His Kinase A (phospho-acceptor) domain MADE_1016045 PF01627 Hpt domain MADE_1016045 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MADE_1016050 PF10458 Valyl tRNA synthetase tRNA binding arm MADE_1016050 PF00133 tRNA synthetases class I (I, L, M and V) MADE_1016050 PF08264 Anticodon-binding domain of tRNA MADE_1016055 PF04364 DNA polymerase III chi subunit, HolC MADE_1016060 PF00883 Cytosol aminopeptidase family, catalytic domain MADE_1016060 PF02789 Cytosol aminopeptidase family, N-terminal domain MADE_1016065 PF03739 Lipopolysaccharide export system permease LptF/LptG MADE_1016070 PF03739 Lipopolysaccharide export system permease LptF/LptG MADE_1016085 PF04542 Sigma-70 region 2 MADE_1016085 PF04545 Sigma-70, region 4 MADE_1016150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MADE_1016150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MADE_1016165 PF11941 Domain of unknown function (DUF3459) MADE_1016165 PF00128 Alpha amylase, catalytic domain MADE_1016175 PF01527 Transposase MADE_1016180 PF13276 HTH-like domain MADE_1016180 PF00665 Integrase core domain MADE_1016180 PF13333 Integrase core domain MADE_1016190 PF03150 Di-haem cytochrome c peroxidase MADE_1016210 PF02371 Transposase IS116/IS110/IS902 family MADE_1016210 PF01548 Transposase MADE_1016245 PF00005 ABC transporter MADE_1016250 PF01032 FecCD transport family MADE_1016255 PF01497 Periplasmic binding protein MADE_1016265 PF00593 TonB dependent receptor MADE_1016265 PF07715 TonB-dependent Receptor Plug Domain MADE_1016275 PF00230 Major intrinsic protein MADE_1016280 PF00892 EamA-like transporter family MADE_1016295 PF07715 TonB-dependent Receptor Plug Domain MADE_1016295 PF00593 TonB dependent receptor MADE_1016315 PF10996 Beta-Casp domain MADE_1016315 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MADE_1016315 PF00753 Metallo-beta-lactamase superfamily MADE_1016320 PF02696 Uncharacterized ACR, YdiU/UPF0061 family MADE_1016325 PF01321 Creatinase/Prolidase N-terminal domain MADE_1016325 PF00557 Metallopeptidase family M24 MADE_1016330 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MADE_1016330 PF05221 S-adenosyl-L-homocysteine hydrolase MADE_1016345 PF13737 Transposase DDE domain MADE_1016350 PF00196 Bacterial regulatory proteins, luxR family MADE_1016350 PF00072 Response regulator receiver domain MADE_1016355 PF07730 Histidine kinase MADE_1016355 PF05231 MASE1 MADE_1016355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1016360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1016360 PF03466 LysR substrate binding domain MADE_1016365 PF00171 Aldehyde dehydrogenase family MADE_1016370 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MADE_1016370 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MADE_1016375 PF02028 BCCT, betaine/carnitine/choline family transporter MADE_1016380 PF01565 FAD binding domain MADE_1016380 PF09330 D-lactate dehydrogenase, membrane binding MADE_1016385 PF00196 Bacterial regulatory proteins, luxR family MADE_1016390 PF03783 Curli production assembly/transport component CsgG MADE_1016415 PF00082 Subtilase family MADE_1016420 PF00196 Bacterial regulatory proteins, luxR family MADE_1016420 PF00072 Response regulator receiver domain MADE_1016435 PF00271 Helicase conserved C-terminal domain MADE_1016435 PF00270 DEAD/DEAH box helicase MADE_1016445 PF00563 EAL domain MADE_1016445 PF00990 Diguanylate cyclase, GGDEF domain MADE_1016445 PF13426 PAS domain MADE_1016460 PF01081 KDPG and KHG aldolase MADE_1016465 PF00294 pfkB family carbohydrate kinase MADE_1016475 PF13340 Putative transposase of IS4/5 family (DUF4096) MADE_1016510 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system MADE_1016525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MADE_1016525 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_1016540 PF00115 Cytochrome C and Quinol oxidase polypeptide I MADE_1016560 PF13340 Putative transposase of IS4/5 family (DUF4096) MADE_1016570 PF00294 pfkB family carbohydrate kinase MADE_1016585 PF07729 FCD domain MADE_1016585 PF00392 Bacterial regulatory proteins, gntR family MADE_1016590 PF12794 Mechanosensitive ion channel inner membrane domain 1 MADE_1016590 PF12795 Mechanosensitive ion channel porin domain MADE_1016590 PF00924 Mechanosensitive ion channel MADE_1016605 PF00141 Peroxidase MADE_1016625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1016625 PF03466 LysR substrate binding domain MADE_1016635 PF01925 Sulfite exporter TauE/SafE MADE_1016645 PF08769 Sporulation initiation factor Spo0A C terminal MADE_1016645 PF00072 Response regulator receiver domain MADE_1016655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1016655 PF00512 His Kinase A (phospho-acceptor) domain MADE_1016665 PF00136 DNA polymerase family B MADE_1016665 PF03104 DNA polymerase family B, exonuclease domain MADE_1016675 PF00501 AMP-binding enzyme MADE_1016675 PF13193 AMP-binding enzyme C-terminal domain MADE_1016690 PF05958 tRNA (Uracil-5-)-methyltransferase MADE_1016695 PF00440 Bacterial regulatory proteins, tetR family MADE_1016705 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_1016705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MADE_1016715 PF03167 Uracil DNA glycosylase superfamily MADE_1016720 PF00990 Diguanylate cyclase, GGDEF domain MADE_1016720 PF03707 Bacterial signalling protein N terminal repeat MADE_1016720 PF00563 EAL domain MADE_1016730 PF01507 Phosphoadenosine phosphosulfate reductase family MADE_1016735 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MADE_1016735 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MADE_1016740 PF00667 FAD binding domain MADE_1016740 PF00258 Flavodoxin MADE_1016740 PF00175 Oxidoreductase NAD-binding domain MADE_1016760 PF04024 PspC domain MADE_1016765 PF04012 PspA/IM30 family MADE_1016775 PF01207 Dihydrouridine synthase (Dus) MADE_1016780 PF00589 Phage integrase family MADE_1016790 PF13007 Transposase C of IS166 homeodomain MADE_1016790 PF03050 Transposase IS66 family MADE_1016790 PF13817 IS66 C-terminal element MADE_1016790 PF13005 zinc-finger binding domain of transposase IS66 MADE_1016840 PF08463 EcoEI R protein C-terminal MADE_1016840 PF00271 Helicase conserved C-terminal domain MADE_1016840 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) MADE_1016840 PF04851 Type III restriction enzyme, res subunit MADE_1016850 PF12161 HsdM N-terminal domain MADE_1016850 PF02384 N-6 DNA Methylase MADE_1016930 PF01389 OmpA-like transmembrane domain MADE_1016930 PF00691 OmpA family MADE_1016935 PF02190 ATP-dependent protease La (LON) substrate-binding domain MADE_1016935 PF00004 ATPase family associated with various cellular activities (AAA) MADE_1016935 PF05362 Lon protease (S16) C-terminal proteolytic domain MADE_1016940 PF03707 Bacterial signalling protein N terminal repeat MADE_1016940 PF00563 EAL domain MADE_1016940 PF00990 Diguanylate cyclase, GGDEF domain MADE_1016945 PF00756 Putative esterase MADE_1016950 PF01553 Acyltransferase MADE_1016955 PF01553 Acyltransferase MADE_1016960 PF00924 Mechanosensitive ion channel MADE_1016975 PF01370 NAD dependent epimerase/dehydratase family MADE_1016980 PF00209 Sodium:neurotransmitter symporter family MADE_1016985 PF00106 short chain dehydrogenase MADE_1016995 PF01625 Peptide methionine sulfoxide reductase MADE_1017015 PF00258 Flavodoxin MADE_1017375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1017375 PF00672 HAMP domain MADE_1017375 PF12729 Four helix bundle sensory module for signal transduction MADE_1017380 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MADE_1017380 PF01565 FAD binding domain MADE_1018015 PF08032 RNA 2'-O ribose methyltransferase substrate binding MADE_1018015 PF00588 SpoU rRNA Methylase family MADE_1018020 PF08461 Ribonuclease R winged-helix domain MADE_1018020 PF17876 Cold shock domain MADE_1018020 PF00575 S1 RNA binding domain MADE_1018020 PF08206 Ribonuclease B OB domain MADE_1018020 PF00773 RNB domain MADE_1018035 PF16655 PhoD-like phosphatase, N-terminal domain MADE_1018035 PF09423 PhoD-like phosphatase MADE_1018050 PF07715 TonB-dependent Receptor Plug Domain MADE_1018050 PF00593 TonB dependent receptor MADE_1018065 PF08238 Sel1 repeat MADE_1018075 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MADE_1018080 PF00175 Oxidoreductase NAD-binding domain MADE_1018095 PF04389 Peptidase family M28 MADE_1018105 PF08446 PAS fold MADE_1018105 PF00360 Phytochrome region MADE_1018105 PF01590 GAF domain MADE_1018105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1018105 PF00512 His Kinase A (phospho-acceptor) domain MADE_1018115 PF01654 Cytochrome bd terminal oxidase subunit I MADE_1018120 PF02322 Cytochrome bd terminal oxidase subunit II MADE_1018130 PF13404 AsnC-type helix-turn-helix domain MADE_1018130 PF01037 Lrp/AsnC ligand binding domain MADE_1018140 PF00313 'Cold-shock' DNA-binding domain MADE_1018145 PF03109 ABC1 family MADE_1018155 PF01209 ubiE/COQ5 methyltransferase family MADE_1018165 PF01432 Peptidase family M3 MADE_1018170 PF00072 Response regulator receiver domain MADE_1018170 PF08769 Sporulation initiation factor Spo0A C terminal MADE_1018180 PF00989 PAS fold MADE_1018180 PF00512 His Kinase A (phospho-acceptor) domain MADE_1018180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1018185 PF00158 Sigma-54 interaction domain MADE_1018185 PF02954 Bacterial regulatory protein, Fis family MADE_1018185 PF00072 Response regulator receiver domain MADE_1018190 PF07992 Pyridine nucleotide-disulphide oxidoreductase MADE_1018190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MADE_1018195 PF10518 TAT (twin-arginine translocation) pathway signal sequence MADE_1018195 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MADE_1018195 PF00384 Molybdopterin oxidoreductase MADE_1018195 PF01568 Molydopterin dinucleotide binding domain MADE_1018200 PF00326 Prolyl oligopeptidase family MADE_1018200 PF07676 WD40-like Beta Propeller Repeat MADE_1018255 PF00664 ABC transporter transmembrane region MADE_1018255 PF03412 Peptidase C39 family MADE_1018255 PF00005 ABC transporter MADE_1018260 PF00196 Bacterial regulatory proteins, luxR family MADE_1018260 PF00072 Response regulator receiver domain MADE_1018270 PF18030 RimK PreATP-grasp domain MADE_1018270 PF08443 RimK-like ATP-grasp domain MADE_1018280 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system MADE_1018285 PF07724 AAA domain (Cdc48 subfamily) MADE_1018285 PF00004 ATPase family associated with various cellular activities (AAA) MADE_1018290 PF00227 Proteasome subunit MADE_1018295 PF05036 Sporulation related domain MADE_1018300 PF17764 3′ DNA-binding domain (3′BD) MADE_1018300 PF18319 PriA DNA helicase Cys-rich region (CRR) domain MADE_1018300 PF00270 DEAD/DEAH box helicase MADE_1018300 PF18074 Primosomal protein N C-terminal domain MADE_1018300 PF00271 Helicase conserved C-terminal domain MADE_1018305 PF01197 Ribosomal protein L31 MADE_1018315 PF00390 Malic enzyme, N-terminal domain MADE_1018315 PF03949 Malic enzyme, NAD binding domain MADE_1018320 PF01340 Met Apo-repressor, MetJ MADE_1018325 PF02219 Methylenetetrahydrofolate reductase MADE_1018330 PF03631 Virulence factor BrkB MADE_1018345 PF00561 alpha/beta hydrolase fold MADE_1018350 PF02580 D-Tyr-tRNA(Tyr) deacylase MADE_1018355 PF00583 Acetyltransferase (GNAT) family MADE_1018355 PF09500 Putative thioesterase (yiiD_Cterm) MADE_1018360 PF04545 Sigma-70, region 4 MADE_1018360 PF04542 Sigma-70 region 2 MADE_1018360 PF00140 Sigma-70 factor, region 1.2 MADE_1018365 PF00563 EAL domain MADE_1018365 PF08668 HDOD domain MADE_1018370 PF08668 HDOD domain MADE_1018370 PF00563 EAL domain MADE_1018375 PF18075 FtsX extracellular domain MADE_1018380 PF00005 ABC transporter MADE_1018385 PF02881 SRP54-type protein, helical bundle domain MADE_1018385 PF00448 SRP54-type protein, GTPase domain MADE_1018400 PF01914 MarC family integral membrane protein MADE_1018410 PF00883 Cytosol aminopeptidase family, catalytic domain MADE_1018410 PF12404 Peptidase MADE_1018415 PF03749 Sugar fermentation stimulation protein RE domain MADE_1018415 PF17746 SfsA N-terminal OB domain MADE_1018420 PF01258 Prokaryotic dksA/traR C4-type zinc finger MADE_1018425 PF00749 tRNA synthetases class I (E and Q), catalytic domain MADE_1018430 PF12627 Probable RNA and SrmB- binding site of polymerase A MADE_1018430 PF01743 Poly A polymerase head domain MADE_1018430 PF12626 Polymerase A arginine-rich C-terminus MADE_1018435 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MADE_1018440 PF02548 Ketopantoate hydroxymethyltransferase MADE_1018445 PF02569 Pantoate-beta-alanine ligase MADE_1018450 PF00282 Pyridoxal-dependent decarboxylase conserved domain MADE_1018465 PF01061 ABC-2 type transporter MADE_1018470 PF00005 ABC transporter MADE_1018475 PF00072 Response regulator receiver domain MADE_1018475 PF00486 Transcriptional regulatory protein, C terminal MADE_1018480 PF00672 HAMP domain MADE_1018480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1018480 PF00512 His Kinase A (phospho-acceptor) domain MADE_1018485 PF07715 TonB-dependent Receptor Plug Domain MADE_1018485 PF00593 TonB dependent receptor MADE_1018490 PF13640 2OG-Fe(II) oxygenase superfamily MADE_1018490 PF18331 PKHD-type hydroxylase C-terminal domain MADE_1018505 PF00571 CBS domain MADE_1018505 PF01595 Cyclin M transmembrane N-terminal domain MADE_1018515 PF02554 Carbon starvation protein CstA MADE_1018515 PF13722 5TM C-terminal transporter carbon starvation CstA MADE_1018535 PF03143 Elongation factor Tu C-terminal domain MADE_1018535 PF00009 Elongation factor Tu GTP binding domain MADE_1018535 PF03144 Elongation factor Tu domain 2 MADE_1018540 PF03144 Elongation factor Tu domain 2 MADE_1018540 PF00679 Elongation factor G C-terminus MADE_1018540 PF14492 Elongation Factor G, domain II MADE_1018540 PF00009 Elongation factor Tu GTP binding domain MADE_1018540 PF03764 Elongation factor G, domain IV MADE_1018545 PF03309 Type III pantothenate kinase MADE_1018925 PF03473 MOSC domain MADE_1018925 PF03475 3-alpha domain MADE_1018940 PF03948 Ribosomal protein L9, C-terminal domain MADE_1018940 PF01281 Ribosomal protein L9, N-terminal domain MADE_1018945 PF01084 Ribosomal protein S18 MADE_1018950 PF01250 Ribosomal protein S6 MADE_1018955 PF07689 KaiB domain MADE_1018955 PF00512 His Kinase A (phospho-acceptor) domain MADE_1018955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1018965 PF12704 MacB-like periplasmic core domain MADE_1018965 PF00005 ABC transporter MADE_1018965 PF02687 FtsX-like permease family MADE_1018975 PF08447 PAS fold MADE_1018975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1018980 PF13188 PAS domain MADE_1018980 PF00512 His Kinase A (phospho-acceptor) domain MADE_1018980 PF00989 PAS fold MADE_1018980 PF13426 PAS domain MADE_1018980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1018985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MADE_1018985 PF08447 PAS fold MADE_1018985 PF13426 PAS domain MADE_1018995 PF01545 Cation efflux family MADE_1018995 PF16916 Dimerisation domain of Zinc Transporter MADE_1019030 PF00933 Glycosyl hydrolase family 3 N terminal domain MADE_1019030 PF01915 Glycosyl hydrolase family 3 C-terminal domain MADE_1019030 PF14310 Fibronectin type III-like domain MADE_1019040 PF00232 Glycosyl hydrolase family 1 MADE_1019045 PF00356 Bacterial regulatory proteins, lacI family MADE_1019050 PF00083 Sugar (and other) transporter MADE_1019055 PF00005 ABC transporter MADE_1019055 PF00664 ABC transporter transmembrane region MADE_1019060 PF00005 ABC transporter MADE_1019060 PF00664 ABC transporter transmembrane region MADE_1019065 PF08173 Membrane bound YbgT-like protein MADE_1019070 PF02322 Cytochrome bd terminal oxidase subunit II MADE_1019075 PF01654 Cytochrome bd terminal oxidase subunit I MADE_1019085 PF00158 Sigma-54 interaction domain MADE_1019085 PF00072 Response regulator receiver domain MADE_1019110 PF13474 SnoaL-like domain MADE_1019120 PF17151 Periplasmic sensor domain MADE_1019120 PF00990 Diguanylate cyclase, GGDEF domain MADE_1019130 PF08021 Siderophore-interacting FAD-binding domain MADE_1019130 PF04954 Siderophore-interacting protein MADE_1019135 PF05532 CsbD-like MADE_1019155 PF00472 RF-1 domain MADE_1019180 PF01292 Prokaryotic cytochrome b561 MADE_1019185 PF04264 YceI-like domain MADE_1019195 PF07715 TonB-dependent Receptor Plug Domain MADE_1019195 PF00593 TonB dependent receptor MADE_1019215 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) MADE_1019220 PF16884 N-terminal domain of oxidoreductase MADE_1019220 PF00107 Zinc-binding dehydrogenase MADE_1019225 PF00563 EAL domain MADE_1019225 PF00990 Diguanylate cyclase, GGDEF domain MADE_1019225 PF00360 Phytochrome region MADE_1019225 PF01590 GAF domain MADE_1019230 PF00512 His Kinase A (phospho-acceptor) domain MADE_1019230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1019230 PF09308 LuxQ, periplasmic MADE_1019230 PF00072 Response regulator receiver domain MADE_1019260 PF02665 Nitrate reductase gamma subunit MADE_1019265 PF02613 Nitrate reductase delta subunit MADE_1019275 PF00384 Molybdopterin oxidoreductase MADE_1019275 PF01568 Molydopterin dinucleotide binding domain MADE_1019275 PF14710 Respiratory nitrate reductase alpha N-terminal MADE_1019280 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term MADE_1019280 PF07730 Histidine kinase MADE_1019280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1019280 PF00672 HAMP domain MADE_1019285 PF00005 ABC transporter MADE_1019285 PF03459 TOBE domain MADE_1019290 PF00528 Binding-protein-dependent transport system inner membrane component MADE_1019300 PF07690 Major Facilitator Superfamily MADE_1019305 PF00072 Response regulator receiver domain MADE_1019305 PF00196 Bacterial regulatory proteins, luxR family MADE_1019310 PF03453 MoeA N-terminal region (domain I and II) MADE_1019310 PF03454 MoeA C-terminal region (domain IV) MADE_1019310 PF00994 Probable molybdopterin binding domain MADE_1019325 PF02391 MoaE protein MADE_1019330 PF02597 ThiS family MADE_1019345 PF12804 MobA-like NTP transferase domain MADE_1019350 PF06463 Molybdenum Cofactor Synthesis C MADE_1019350 PF04055 Radical SAM superfamily MADE_1019360 PF00899 ThiF family MADE_1019370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MADE_1019370 PF00205 Thiamine pyrophosphate enzyme, central domain MADE_1019370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MADE_1019395 PF04405 Domain of Unknown function (DUF542) MADE_1019395 PF01814 Hemerythrin HHE cation binding domain MADE_1019400 PF00158 Sigma-54 interaction domain MADE_1019400 PF02954 Bacterial regulatory protein, Fis family MADE_1019405 PF04247 Invasion gene expression up-regulator, SirB MADE_1019415 PF07690 Major Facilitator Superfamily MADE_1019420 PF07690 Major Facilitator Superfamily MADE_1019425 PF00069 Protein kinase domain MADE_1019435 PF00005 ABC transporter MADE_1019455 PF01380 SIS domain MADE_1019460 PF00455 DeoR C terminal sensor domain MADE_1019460 PF08220 DeoR-like helix-turn-helix domain MADE_1019465 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MADE_1019465 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MADE_1019470 PF00132 Bacterial transferase hexapeptide (six repeats) MADE_1019470 PF14602 Hexapeptide repeat of succinyl-transferase MADE_1019470 PF12804 MobA-like NTP transferase domain MADE_1019480 PF00892 EamA-like transporter family MADE_1019485 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MADE_1019485 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MADE_1019495 PF00144 Beta-lactamase MADE_1019500 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MADE_1019500 PF17944 Arginine decarboxylase C-terminal helical extension MADE_1019500 PF17810 Arginine decarboxylase helical bundle domain MADE_1019510 PF02233 NAD(P) transhydrogenase beta subunit MADE_1019515 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch MADE_1019520 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MADE_1019520 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MADE_1019570 PF01040 UbiA prenyltransferase family MADE_1019575 PF03626 Prokaryotic Cytochrome C oxidase subunit IV MADE_1019580 PF00510 Cytochrome c oxidase subunit III MADE_1019585 PF00115 Cytochrome C and Quinol oxidase polypeptide I MADE_1019590 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MADE_1019590 PF06481 COX Aromatic Rich Motif MADE_1019600 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MADE_1019605 PF01850 PIN domain MADE_1019625 PF00118 TCP-1/cpn60 chaperonin family MADE_1019630 PF00166 Chaperonin 10 Kd subunit MADE_1019635 PF04186 FxsA cytoplasmic membrane protein MADE_1019640 PF03091 CutA1 divalent ion tolerance protein MADE_1019645 PF11412 Disulphide bond corrector protein DsbC MADE_1019645 PF02683 Cytochrome C biogenesis protein transmembrane region MADE_1019650 PF01551 Peptidase family M23 MADE_1019655 PF01220 Dehydroquinase class II MADE_1019660 PF00364 Biotin-requiring enzyme MADE_1019665 PF02785 Biotin carboxylase C-terminal domain MADE_1019665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MADE_1019665 PF00289 Biotin carboxylase, N-terminal domain MADE_1019690 PF11490 DNA polymerase III polC-type N-terminus II MADE_1019690 PF00929 Exonuclease MADE_1019690 PF02811 PHP domain MADE_1019690 PF07733 Bacterial DNA polymerase III alpha NTPase domain MADE_1019690 PF14579 Helix-hairpin-helix motif MADE_1019690 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MADE_1019710 PF01355 High potential iron-sulfur protein MADE_1019715 PF01425 Amidase MADE_1019730 PF01207 Dihydrouridine synthase (Dus) MADE_1019735 PF02954 Bacterial regulatory protein, Fis family MADE_1019765 PF00027 Cyclic nucleotide-binding domain MADE_1019765 PF00520 Ion transport protein MADE_1019770 PF00485 Phosphoribulokinase / Uridine kinase family MADE_1019780 PF00072 Response regulator receiver domain MADE_1019780 PF00486 Transcriptional regulatory protein, C terminal MADE_1019790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MADE_1019790 PF00512 His Kinase A (phospho-acceptor) domain MADE_1019790 PF00672 HAMP domain MADE_1019800 PF16338 Domain of unknown function (DUF4968) MADE_1019800 PF17137 Domain of unknown function (DUF5110) MADE_1019800 PF13802 Galactose mutarotase-like MADE_1019800 PF01055 Glycosyl hydrolases family 31 MADE_1019810 PF01430 Hsp33 protein MADE_1019825 PF00263 Bacterial type II and III secretion system protein MADE_1019825 PF03958 Bacterial type II/III secretion system short domain MADE_1019830 PF00437 Type II/IV secretion system protein MADE_1019835 PF00482 Type II secretion system (T2SS), protein F MADE_1019840 PF08334 Type II secretion system (T2SS), protein G MADE_1019840 PF07963 Prokaryotic N-terminal methylation motif MADE_1019845 PF12019 Type II transport protein GspH MADE_1019850 PF07963 Prokaryotic N-terminal methylation motif MADE_1019850 PF02501 Type II secretion system (T2SS), protein I MADE_1019855 PF07963 Prokaryotic N-terminal methylation motif MADE_1019855 PF11612 Type II secretion system (T2SS), protein J MADE_1019865 PF05134 Type II secretion system (T2SS), protein L MADE_1019865 PF12693 GspL periplasmic domain MADE_1019870 PF04612 Type II secretion system (T2SS), protein M MADE_1019885 PF00171 Aldehyde dehydrogenase family MADE_1019890 PF01931 Protein of unknown function DUF84 MADE_1019895 PF13419 Haloacid dehalogenase-like hydrolase MADE_1019905 PF00459 Inositol monophosphatase family MADE_1019930 PF06794 Uncharacterised protein family (UPF0270) MADE_1019935 PF00561 alpha/beta hydrolase fold MADE_1019965 PF04102 SlyX MADE_1019975 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MADE_1019975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MADE_1019985 PF01272 Transcription elongation factor, GreA/GreB, C-term MADE_1019985 PF03449 Transcription elongation factor, N-terminal MADE_1020010 PF00561 alpha/beta hydrolase fold MADE_1020015 PF00156 Phosphoribosyl transferase domain MADE_1020025 PF01106 NifU-like domain MADE_1020025 PF01521 Iron-sulphur cluster biosynthesis MADE_1020035 PF01177 Asp/Glu/Hydantoin racemase MADE_1020050 PF14883 Hypothetical glycosyl hydrolase family 13 MADE_1020050 PF01522 Polysaccharide deacetylase MADE_1020060 PF02630 SCO1/SenC MADE_1020065 PF01040 UbiA prenyltransferase family MADE_1020070 PF02628 Cytochrome oxidase assembly protein MADE_1020095 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 MADE_1020100 PF00115 Cytochrome C and Quinol oxidase polypeptide I MADE_1020105 PF02790 Cytochrome C oxidase subunit II, transmembrane domain MADE_1020105 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MADE_1020110 PF01726 LexA DNA binding domain MADE_1020110 PF00717 Peptidase S24-like MADE_1020125 PF00920 Dehydratase family MADE_1020140 PF03466 LysR substrate binding domain MADE_1020140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MADE_1020145 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MADE_1020145 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MADE_1020150 PF07690 Major Facilitator Superfamily MADE_1020160 PF17243 POTRA domain TamA domain 1 MADE_1020160 PF07244 Surface antigen variable number repeat MADE_1020160 PF01103 Surface antigen MADE_1020165 PF04357 TamB, inner membrane protein subunit of TAM complex MADE_1020190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MADE_1020190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MADE_1020200 PF01472 PUA domain MADE_1020200 PF00696 Amino acid kinase family MADE_1020220 PF03109 ABC1 family MADE_1020245 PF01979 Amidohydrolase family MADE_1020270 PF01206 Sulfurtransferase TusA MADE_1020275 PF00156 Phosphoribosyl transferase domain MADE_1020280 PF01138 3' exoribonuclease family, domain 1 MADE_1020280 PF03725 3' exoribonuclease family, domain 2 MADE_1020290 PF03755 YicC-like family, N-terminal region MADE_1020290 PF08340 Domain of unknown function (DUF1732) MADE_1020300 PF13657 HipA N-terminal domain MADE_1020300 PF07804 HipA-like C-terminal domain MADE_1020305 PF01381 Helix-turn-helix MADE_1020340 PF02384 N-6 DNA Methylase MADE_1020340 PF12161 HsdM N-terminal domain MADE_1020345 PF08463 EcoEI R protein C-terminal MADE_1020345 PF00271 Helicase conserved C-terminal domain MADE_1020345 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) MADE_1020345 PF04851 Type III restriction enzyme, res subunit MADE_1020370 PF13411 MerR HTH family regulatory protein MADE_1020395 PF02661 Fic/DOC family MADE_1020395 PF13784 Fic/DOC family N-terminal MADE_1020405 PF00356 Bacterial regulatory proteins, lacI family MADE_1020415 PF00691 OmpA family MADE_1020415 PF05736 OprF membrane domain MADE_1020420 PF01966 HD domain MADE_1020435 PF02798 Glutathione S-transferase, N-terminal domain MADE_1020435 PF00043 Glutathione S-transferase, C-terminal domain MADE_1020445 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain MADE_1020445 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MADE_1020450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MADE_1020450 PF02874 ATP synthase alpha/beta family, beta-barrel domain MADE_1020455 PF00231 ATP synthase MADE_1020460 PF00306 ATP synthase alpha/beta chain, C terminal domain MADE_1020460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MADE_1020460 PF02874 ATP synthase alpha/beta family, beta-barrel domain MADE_1020475 PF00430 ATP synthase B/B' CF(0) MADE_1020480 PF00137 ATP synthase subunit C MADE_1020485 PF00119 ATP synthase A chain MADE_1020495 PF02195 ParB-like nuclease domain MADE_1020495 PF17762 HTH domain found in ParB protein MADE_1020500 PF13614 AAA domain MADE_1020505 PF02527 rRNA small subunit methyltransferase G MADE_1020510 PF01134 Glucose inhibited division protein A MADE_1020510 PF13932 GidA associated domain MADE_1020525 PF00258 Flavodoxin MADE_1020530 PF01926 50S ribosome-binding GTPase MADE_1020530 PF12631 MnmE helical domain MADE_1020530 PF10396 GTP-binding protein TrmE N-terminus MADE_1020535 PF04461 Protein of unknown function (DUF520) MADE_1020550 PF01809 Putative membrane protein insertion efficiency factor