MADE_000001020750 SM00287 Bacterial SH3 domain homologues MADE_000001020780 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_000001020780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MADE_000001020790 SM00400 zinc finger MADE_000001020790 SM00493 MADE_000001020790 MADE_000001020790 SM00766 DNA primase DnaG DnaB-binding MADE_000001020870 SM00857 Resolvase, N terminal domain MADE_000001020920 SM00347 helix_turn_helix multiple antibiotic resistance protein MADE_000001020950 SM00052 Putative diguanylate phosphodiesterase MADE_000001020950 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MADE_000001020950 SM00091 PAS domain MADE_000001020950 SM00267 diguanylate cyclase MADE_000001020960 SM00855 Phosphoglycerate mutase family MADE_000001020980 SM00382 ATPases associated with a variety of cellular activities MADE_000001020980 SM00962 SRP54-type protein, GTPase domain MADE_000001020980 SM00963 SRP54-type protein, helical bundle domain MADE_000001021035 SM00382 ATPases associated with a variety of cellular activities MADE_000001021085 SM00830 Chorismate mutase type II MADE_000001021090 SM00830 Chorismate mutase type II MADE_000001021110 SM00331 Sigma factor PP2C-like phosphatases MADE_000001021110 SM00448 cheY-homologous receiver domain MADE_000001021120 SM00052 Putative diguanylate phosphodiesterase MADE_000001021120 SM00267 diguanylate cyclase MADE_000001021130 SM00387 Histidine kinase-like ATPases MADE_000001021130 SM00388 His Kinase A (phosphoacceptor) domain MADE_000001021140 SM00382 ATPases associated with a variety of cellular activities MADE_000001021140 SM00448 cheY-homologous receiver domain MADE_000001021175 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MADE_000001021180 SM00382 ATPases associated with a variety of cellular activities MADE_000001021260 SM00028 Tetratricopeptide repeats MADE_000001021260 SM00387 Histidine kinase-like ATPases MADE_000001021260 SM00388 His Kinase A (phosphoacceptor) domain MADE_000001021260 SM00448 cheY-homologous receiver domain MADE_000001021270 SM00859 Semialdehyde dehydrogenase, NAD binding domain MADE_000001021285 SM00267 diguanylate cyclase MADE_000001021310 SM00116 Domain in cystathionine beta-synthase and other proteins. MADE_000001021350 SM00267 diguanylate cyclase MADE_000001021455 SM01321 MADE_000001021455 MADE_000001021550 SM00052 Putative diguanylate phosphodiesterase MADE_000001021555 SM00382 ATPases associated with a variety of cellular activities MADE_000001021570 SM00634 Bacterial Ig-like domain (group 1) MADE_000001021585 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MADE_000001021585 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MADE_000001021585 SM00493 MADE_000001021585 MADE_000001021645 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MADE_000001021680 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. MADE_000001021685 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain MADE_000001021720 SM00357 Cold shock protein domain MADE_000001021735 SM00316 Ribosomal protein S1-like RNA-binding domain MADE_000001021750 SM00731 SprT homologues. MADE_000001021780 SM00870 MADE_000001021780 MADE_000001021785 SM00729 Elongator protein 3, MiaB family, Radical SAM MADE_000001021800 SM00936 Penicillin-binding protein 5, C-terminal domain MADE_000001021865 SM00267 diguanylate cyclase MADE_000001021875 SM01103 MADE_000001021875 MADE_000001021885 SM00382 ATPases associated with a variety of cellular activities MADE_000001021915 SM00052 Putative diguanylate phosphodiesterase MADE_000001021915 SM00267 diguanylate cyclase MADE_000001021915 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MADE_000001021930 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MADE_000001021935 SM00046 Diacylglycerol kinase catalytic domain (presumed) MADE_000001021935 SM00195 Dual specificity phosphatase, catalytic domain MADE_000001022000 SM00382 ATPases associated with a variety of cellular activities MADE_000001022060 SM00047 Lysozyme subfamily 2 MADE_000001022075 SM00421 helix_turn_helix, Lux Regulon MADE_000001022075 SM00448 cheY-homologous receiver domain MADE_000001022160 SM01126 MADE_000001022160 MADE_000001022265 SM00028 Tetratricopeptide repeats MADE_000001022275 SM00382 ATPases associated with a variety of cellular activities MADE_000001022275 SM01086 C-terminal, D2-small domain, of ClpB protein MADE_000001022375 SM00354 helix_turn _helix lactose operon repressor MADE_000001022415 SM00967 RNA 2'-O ribose methyltransferase substrate binding MADE_000001022515 SM00482 DNA polymerase A domain MADE_000001022545 SM00487 DEAD-like helicases superfamily MADE_000001022605 SM00842 Cell division protein FtsA MADE_000001022675 SM00886 Stress responsive A/B Barrel Domain MADE_000001022810 SM00052 Putative diguanylate phosphodiesterase MADE_000001022810 SM00267 diguanylate cyclase MADE_000001022830 SM00849 Metallo-beta-lactamase superfamily MADE_000001022865 SM00530 Helix-turn-helix XRE-family like proteins MADE_000001022885 SM00903 Flavin reductase like domain MADE_000001022920 SM00100 Cyclic nucleotide-monophosphate binding domain MADE_000001022935 SM00849 Metallo-beta-lactamase superfamily MADE_000001022975 SM00900 MADE_000001022975 MADE_000001023065 SM00028 Tetratricopeptide repeats MADE_000001023075 SM00267 diguanylate cyclase MADE_000001023075 SM00448 cheY-homologous receiver domain MADE_000001023080 SM00479 MADE_000001023080 MADE_000001023085 SM00116 Domain in cystathionine beta-synthase and other proteins. MADE_000001023100 SM00387 Histidine kinase-like ATPases MADE_000001023100 SM00388 His Kinase A (phosphoacceptor) domain MADE_000001023100 SM00448 cheY-homologous receiver domain MADE_000001023130 SM00421 helix_turn_helix, Lux Regulon MADE_000001023130 SM00448 cheY-homologous receiver domain MADE_000001023155 SM01358 MADE_000001023155 MADE_000001023170 SM00052 Putative diguanylate phosphodiesterase MADE_000001023170 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MADE_000001023170 SM00091 PAS domain MADE_000001023170 SM00267 diguanylate cyclase MADE_000001023295 SM00663 RNA polymerase I subunit A N-terminus MADE_000001023320 SM00649 Ribosomal protein L11/L12 MADE_000001023340 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. MADE_000001023340 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. MADE_000001023355 SM00382 ATPases associated with a variety of cellular activities MADE_000001023375 SM00487 DEAD-like helicases superfamily MADE_000001023375 SM00490 helicase superfamily c-terminal domain MADE_000001023410 SM00642 Alpha-amylase domain MADE_000001023445 SM00487 DEAD-like helicases superfamily MADE_000001023445 SM00490 helicase superfamily c-terminal domain MADE_000001023450 SM00849 Metallo-beta-lactamase superfamily MADE_000001023460 SM00841 Elongation factor P, C-terminal MADE_000001023460 SM01185 MADE_000001023460 MADE_000001023535 SM00244 prohibitin homologues MADE_000001023540 SM00244 prohibitin homologues MADE_000001023560 SM01340 MADE_000001023560 MADE_000001023565 SM00257 Lysin motif MADE_000001023565 SM00646 MADE_000001023565 MADE_000001023625 SM00382 ATPases associated with a variety of cellular activities MADE_000001023675 SM00047 Lysozyme subfamily 2 MADE_000001023700 SM00382 ATPases associated with a variety of cellular activities MADE_1000015 SM00480 DNA polymerase III beta subunit MADE_1000025 SM00387 Histidine kinase-like ATPases MADE_1000025 SM00433 TopoisomeraseII MADE_1000035 SM00836 DALR anticodon binding domain MADE_1000075 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs MADE_1000075 SM00474 3'-5' exonuclease MADE_1000075 SM00475 5'-3' exonuclease MADE_1000075 SM00482 DNA polymerase A domain MADE_1000110 SM00257 Lysin motif MADE_1000185 SM00481 DNA polymerase alpha chain like domain MADE_1000280 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain MADE_1000280 SM01232 MADE_1000280 MADE_1000310 SM00052 Putative diguanylate phosphodiesterase MADE_1000310 SM00267 diguanylate cyclase MADE_1000320 SM00829 Enoylreductase MADE_1000325 SM00450 Rhodanese Homology Domain MADE_1000355 SM00530 Helix-turn-helix XRE-family like proteins MADE_1000370 SM00052 Putative diguanylate phosphodiesterase MADE_1000370 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MADE_1000370 SM00267 diguanylate cyclase MADE_1000385 SM00530 Helix-turn-helix XRE-family like proteins MADE_1000420 SM00849 Metallo-beta-lactamase superfamily MADE_1000445 SM00382 ATPases associated with a variety of cellular activities MADE_1000450 SM00382 ATPases associated with a variety of cellular activities MADE_1000465 SM00450 Rhodanese Homology Domain MADE_1000470 SM00849 Metallo-beta-lactamase superfamily MADE_1000490 SM00421 helix_turn_helix, Lux Regulon MADE_1000535 SM00954 Region found in RelA / SpoT proteins MADE_1000575 SM00487 DEAD-like helicases superfamily MADE_1000575 SM00490 helicase superfamily c-terminal domain MADE_1000635 SM00382 ATPases associated with a variety of cellular activities MADE_1000670 SM00849 Metallo-beta-lactamase superfamily MADE_1000695 SM00876 Biotin and Thiamin Synthesis associated domain MADE_1000745 SM00267 diguanylate cyclase MADE_1000760 SM00072 Guanylate kinase homologues. MADE_1000765 SM01409 MADE_1000765 MADE_1000770 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MADE_1000770 SM00954 Region found in RelA / SpoT proteins MADE_1000785 SM00487 DEAD-like helicases superfamily MADE_1000785 SM00490 helicase superfamily c-terminal domain MADE_1000815 SM00382 ATPases associated with a variety of cellular activities MADE_1000835 SM00507 HNH nucleases MADE_1000865 SM00052 Putative diguanylate phosphodiesterase MADE_1000865 SM01034 Sensors of blue-light using FAD MADE_1000890 SM00271 DnaJ molecular chaperone homology domain MADE_1000930 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1000950 SM00052 Putative diguanylate phosphodiesterase MADE_1000950 SM00267 diguanylate cyclase MADE_1000965 SM00341 Helicase and RNase D C-terminal MADE_1000965 SM00487 DEAD-like helicases superfamily MADE_1000965 SM00490 helicase superfamily c-terminal domain MADE_1000965 SM00956 MADE_1000965 MADE_1000970 SM00924 MgtE intracellular N domain MADE_1000980 SM00267 diguanylate cyclase MADE_1000980 SM00448 cheY-homologous receiver domain MADE_1000990 SM00971 Serine acetyltransferase, N-terminal MADE_1001030 SM00014 Acid phosphatase homologues MADE_1001075 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. MADE_1001125 SM00354 helix_turn _helix lactose operon repressor MADE_1001190 SM00420 helix_turn_helix, Deoxyribose operon repressor MADE_1001190 SM01134 MADE_1001190 MADE_1001230 SM00965 Secretin and TonB N terminus short domain MADE_1001240 SM00028 Tetratricopeptide repeats MADE_1001245 SM00382 ATPases associated with a variety of cellular activities MADE_1001315 SM00316 Ribosomal protein S1-like RNA-binding domain MADE_1001345 SM00342 helix_turn_helix, arabinose operon control protein MADE_1001350 SM01038 Beta galactosidase small chain MADE_1001355 SM00448 cheY-homologous receiver domain MADE_1001355 SM00862 Transcriptional regulatory protein, C terminal MADE_1001360 SM00387 Histidine kinase-like ATPases MADE_1001385 SM00478 endonuclease III MADE_1001385 SM00525 MADE_1001385 MADE_1001440 SM00382 ATPases associated with a variety of cellular activities MADE_1001530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MADE_1001530 SM00387 Histidine kinase-like ATPases MADE_1001530 SM00388 His Kinase A (phosphoacceptor) domain MADE_1001535 SM00448 cheY-homologous receiver domain MADE_1001535 SM00862 Transcriptional regulatory protein, C terminal MADE_1001715 SM00422 helix_turn_helix, mercury resistance MADE_1001870 SM00448 cheY-homologous receiver domain MADE_1001870 SM00862 Transcriptional regulatory protein, C terminal MADE_1001875 SM00387 Histidine kinase-like ATPases MADE_1001915 SM00422 helix_turn_helix, mercury resistance MADE_1001995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1002000 SM00448 cheY-homologous receiver domain MADE_1002005 SM00073 Histidine Phosphotransfer domain MADE_1002005 SM00260 Two component signalling adaptor domain MADE_1002005 SM00387 Histidine kinase-like ATPases MADE_1002005 SM01231 MADE_1002005 MADE_1002010 SM00260 Two component signalling adaptor domain MADE_1002020 SM00448 cheY-homologous receiver domain MADE_1002070 SM00342 helix_turn_helix, arabinose operon control protein MADE_1002070 SM00387 Histidine kinase-like ATPases MADE_1002070 SM00388 His Kinase A (phosphoacceptor) domain MADE_1002070 SM00448 cheY-homologous receiver domain MADE_1002085 SM00354 helix_turn _helix lactose operon repressor MADE_1002230 SM00855 Phosphoglycerate mutase family MADE_1002245 SM00671 Sel1-like repeats. MADE_1002250 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MADE_1002250 SM00382 ATPases associated with a variety of cellular activities MADE_1002255 SM01403 MADE_1002255 MADE_1002275 SM01382 MADE_1002275 MADE_1002275 SM01383 MADE_1002275 MADE_1002290 SM00322 K homology RNA-binding domain MADE_1002355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1002355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MADE_1002380 SM00487 DEAD-like helicases superfamily MADE_1002380 SM00490 helicase superfamily c-terminal domain MADE_1002410 SM00342 helix_turn_helix, arabinose operon control protein MADE_1002420 SM00938 Nitrogen regulatory protein P-II MADE_1002440 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain MADE_1002475 SM00073 Histidine Phosphotransfer domain MADE_1002475 SM00387 Histidine kinase-like ATPases MADE_1002475 SM00388 His Kinase A (phosphoacceptor) domain MADE_1002475 SM00448 cheY-homologous receiver domain MADE_1002480 SM00434 DNA Topoisomerase IV MADE_1002490 SM00052 Putative diguanylate phosphodiesterase MADE_1002490 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MADE_1002490 SM00091 PAS domain MADE_1002490 SM00267 diguanylate cyclase MADE_1002495 SM01150 MADE_1002495 MADE_1002570 SM00965 Secretin and TonB N terminus short domain MADE_1002590 SM00842 Cell division protein FtsA MADE_1002600 SM00919 Malic enzyme, NAD binding domain MADE_1002600 SM01274 MADE_1002600 MADE_1002620 SM01060 MADE_1002620 MADE_1002665 SM00859 Semialdehyde dehydrogenase, NAD binding domain MADE_1002670 SM00851 MGS-like domain MADE_1002680 SM00448 cheY-homologous receiver domain MADE_1002680 SM00862 Transcriptional regulatory protein, C terminal MADE_1002685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MADE_1002685 SM00387 Histidine kinase-like ATPases MADE_1002685 SM00388 His Kinase A (phosphoacceptor) domain MADE_1002720 SM00450 Rhodanese Homology Domain MADE_1002760 SM00479 MADE_1002760 MADE_1002835 SM00267 diguanylate cyclase MADE_1002840 SM01004 Delta-aminolevulinic acid dehydratase MADE_1002850 SM00487 DEAD-like helicases superfamily MADE_1002850 SM00490 helicase superfamily c-terminal domain MADE_1002860 SM00357 Cold shock protein domain MADE_1002860 SM00382 ATPases associated with a variety of cellular activities MADE_1002860 SM00959 Rho termination factor, N-terminal domain MADE_1002870 SM00387 Histidine kinase-like ATPases MADE_1002870 SM00388 His Kinase A (phosphoacceptor) domain MADE_1002870 SM00448 cheY-homologous receiver domain MADE_1002880 SM01001 AIR carboxylase MADE_1002935 SM00788 Adenylosuccinate synthetase MADE_1002985 SM01005 Alanine racemase, C-terminal domain MADE_1003010 SM00062 Bacterial periplasmic substrate-binding proteins MADE_1003040 SM00670 Large family of predicted nucleotide-binding domains MADE_1003060 SM00530 Helix-turn-helix XRE-family like proteins MADE_1003215 SM00530 Helix-turn-helix XRE-family like proteins MADE_1003360 SM00257 Lysin motif MADE_1003400 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1003400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MADE_1003400 SM01049 MADE_1003400 MADE_1003425 SM01118 MADE_1003425 MADE_1003435 SM00927 DNA mismatch repair enzyme MutH MADE_1003445 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MADE_1003465 SM00448 cheY-homologous receiver domain MADE_1003470 SM00267 diguanylate cyclase MADE_1003495 SM00487 DEAD-like helicases superfamily MADE_1003495 SM00490 helicase superfamily c-terminal domain MADE_1003510 SM00670 Large family of predicted nucleotide-binding domains MADE_1003525 SM00487 DEAD-like helicases superfamily MADE_1003525 SM00490 helicase superfamily c-terminal domain MADE_1003530 SM00028 Tetratricopeptide repeats MADE_1003570 SM00387 Histidine kinase-like ATPases MADE_1003570 SM00433 TopoisomeraseII MADE_1003610 SM00841 Elongation factor P, C-terminal MADE_1003610 SM01185 MADE_1003610 MADE_1003665 SM00014 Acid phosphatase homologues MADE_1003675 SM01012 MADE_1003675 MADE_1003705 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MADE_1003720 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MADE_1003720 SM00091 PAS domain MADE_1003720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1003735 SM00382 ATPases associated with a variety of cellular activities MADE_1003795 SM01207 MADE_1003795 MADE_1003800 SM00905 Dihydroneopterin aldolase MADE_1003835 SM00530 Helix-turn-helix XRE-family like proteins MADE_1003845 SM00387 Histidine kinase-like ATPases MADE_1003850 SM00448 cheY-homologous receiver domain MADE_1003850 SM00862 Transcriptional regulatory protein, C terminal MADE_1003855 SM00387 Histidine kinase-like ATPases MADE_1003855 SM00388 His Kinase A (phosphoacceptor) domain MADE_1003865 SM00710 Parallel beta-helix repeats MADE_1003900 SM00028 Tetratricopeptide repeats MADE_1003905 SM00448 cheY-homologous receiver domain MADE_1003905 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MADE_1003910 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MADE_1003910 SM00091 PAS domain MADE_1003910 SM00387 Histidine kinase-like ATPases MADE_1003910 SM00388 His Kinase A (phosphoacceptor) domain MADE_1003910 SM00448 cheY-homologous receiver domain MADE_1003965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1003965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MADE_1003980 SM00650 Ribosomal RNA adenine dimethylases MADE_1004000 SM00271 DnaJ molecular chaperone homology domain MADE_1004045 SM00954 Region found in RelA / SpoT proteins MADE_1004075 SM00822 MADE_1004075 MADE_1004080 SM01236 MADE_1004080 MADE_1004125 SM00387 Histidine kinase-like ATPases MADE_1004125 SM00388 His Kinase A (phosphoacceptor) domain MADE_1004130 SM00448 cheY-homologous receiver domain MADE_1004130 SM00862 Transcriptional regulatory protein, C terminal MADE_1004160 SM00116 Domain in cystathionine beta-synthase and other proteins. MADE_1004160 SM00924 MgtE intracellular N domain MADE_1004190 SM00382 ATPases associated with a variety of cellular activities MADE_1004220 SM00382 ATPases associated with a variety of cellular activities MADE_1004255 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MADE_1004260 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MADE_1004320 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MADE_1004320 SM00091 PAS domain MADE_1004320 SM00387 Histidine kinase-like ATPases MADE_1004320 SM00388 His Kinase A (phosphoacceptor) domain MADE_1004320 SM00448 cheY-homologous receiver domain MADE_1004345 SM00861 Transketolase, pyrimidine binding domain MADE_1004350 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MADE_1004400 SM00382 ATPases associated with a variety of cellular activities MADE_1004435 SM00347 helix_turn_helix multiple antibiotic resistance protein MADE_1004445 SM01263 MADE_1004445 MADE_1004500 SM00345 helix_turn_helix gluconate operon transcriptional repressor MADE_1004500 SM00866 MADE_1004500 MADE_1004540 SM00382 ATPases associated with a variety of cellular activities MADE_1004615 SM00850 LytTr DNA-binding domain MADE_1004630 SM00448 cheY-homologous receiver domain MADE_1004635 SM00091 PAS domain MADE_1004655 SM00729 Elongator protein 3, MiaB family, Radical SAM MADE_1004665 SM00487 DEAD-like helicases superfamily MADE_1004665 SM00490 helicase superfamily c-terminal domain MADE_1004675 SM00382 ATPases associated with a variety of cellular activities MADE_1004685 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MADE_1004700 SM01329 MADE_1004700 MADE_1004705 SM00917 LeuA allosteric (dimerisation) domain MADE_1004715 SM01192 MADE_1004715 MADE_1004715 SM01193 MADE_1004715 MADE_1004725 SM00533 DNA-binding domain of DNA mismatch repair MUTS family MADE_1004725 SM00534 ATPase domain of DNA mismatch repair MUTS family MADE_1004735 SM00382 ATPases associated with a variety of cellular activities MADE_1004740 SM00382 ATPases associated with a variety of cellular activities MADE_1004760 SM00382 ATPases associated with a variety of cellular activities MADE_1004830 SM00382 ATPases associated with a variety of cellular activities MADE_1004870 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MADE_1004875 SM01329 MADE_1004875 MADE_1004895 SM00267 diguanylate cyclase MADE_1005225 SM00028 Tetratricopeptide repeats MADE_1005230 SM00564 beta-propeller repeat MADE_1005235 SM00382 ATPases associated with a variety of cellular activities MADE_1005255 SM00116 Domain in cystathionine beta-synthase and other proteins. MADE_1005255 SM01240 MADE_1005255 MADE_1005275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1005355 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MADE_1005365 SM00935 Outer membrane protein (OmpH-like) MADE_1005390 SM00481 DNA polymerase alpha chain like domain MADE_1005400 SM00977 TilS substrate C-terminal domain MADE_1005405 SM00267 diguanylate cyclase MADE_1005430 SM00062 Bacterial periplasmic substrate-binding proteins MADE_1005435 SM01211 MADE_1005435 MADE_1005490 SM00382 ATPases associated with a variety of cellular activities MADE_1005500 SM00422 helix_turn_helix, mercury resistance MADE_1005525 SM00422 helix_turn_helix, mercury resistance MADE_1005560 SM00422 helix_turn_helix, mercury resistance MADE_1005585 SM00422 helix_turn_helix, mercury resistance MADE_1005600 SM00422 helix_turn_helix, mercury resistance MADE_1005625 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MADE_1005655 SM00421 helix_turn_helix, Lux Regulon MADE_1005690 SM00858 MADE_1005690 MADE_1005695 SM00260 Two component signalling adaptor domain MADE_1005695 SM00448 cheY-homologous receiver domain MADE_1005700 SM00138 Methyltransferase, chemotaxis proteins MADE_1005745 SM00047 Lysozyme subfamily 2 MADE_1005820 SM00858 MADE_1005820 MADE_1005880 SM00382 ATPases associated with a variety of cellular activities MADE_1005885 SM00387 Histidine kinase-like ATPases MADE_1005885 SM00388 His Kinase A (phosphoacceptor) domain MADE_1005890 SM00382 ATPases associated with a variety of cellular activities MADE_1005890 SM00448 cheY-homologous receiver domain MADE_1005915 SM00382 ATPases associated with a variety of cellular activities MADE_1005975 SM00382 ATPases associated with a variety of cellular activities MADE_1005975 SM00962 SRP54-type protein, GTPase domain MADE_1005990 SM00448 cheY-homologous receiver domain MADE_1006000 SM00073 Histidine Phosphotransfer domain MADE_1006000 SM00260 Two component signalling adaptor domain MADE_1006000 SM00387 Histidine kinase-like ATPases MADE_1006000 SM01231 MADE_1006000 MADE_1006005 SM00448 cheY-homologous receiver domain MADE_1006015 SM00260 Two component signalling adaptor domain MADE_1006020 SM00260 Two component signalling adaptor domain MADE_1006040 SM01018 B12 binding domain MADE_1006065 SM00947 Carbonic anhydrase MADE_1006100 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MADE_1006130 SM00382 ATPases associated with a variety of cellular activities MADE_1006135 SM00382 ATPases associated with a variety of cellular activities MADE_1006155 SM00382 ATPases associated with a variety of cellular activities MADE_1006180 SM00091 PAS domain MADE_1006180 SM00382 ATPases associated with a variety of cellular activities MADE_1006195 SM00344 helix_turn_helix ASNC type MADE_1006200 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MADE_1006225 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. MADE_1006240 SM00028 Tetratricopeptide repeats MADE_1006275 SM00028 Tetratricopeptide repeats MADE_1006360 SM00829 Enoylreductase MADE_1006385 SM00836 DALR anticodon binding domain MADE_1006385 SM01016 Arginyl tRNA synthetase N terminal dom MADE_1006425 SM00267 diguanylate cyclase MADE_1006465 SM00937 MADE_1006465 MADE_1006520 SM00463 Small MutS-related domain MADE_1006550 SM00763 PrkA AAA domain MADE_1006580 SM00965 Secretin and TonB N terminus short domain MADE_1006595 SM00479 MADE_1006595 MADE_1006615 SM00357 Cold shock protein domain MADE_1006630 SM00478 endonuclease III MADE_1006640 SM00900 MADE_1006640 MADE_1006670 SM00487 DEAD-like helicases superfamily MADE_1006670 SM00490 helicase superfamily c-terminal domain MADE_1006750 SM00267 diguanylate cyclase MADE_1006775 SM00028 Tetratricopeptide repeats MADE_1006780 SM00327 von Willebrand factor (vWF) type A domain MADE_1006825 SM00382 ATPases associated with a variety of cellular activities MADE_1006840 SM00905 Dihydroneopterin aldolase MADE_1006850 SM00387 Histidine kinase-like ATPases MADE_1006855 SM00448 cheY-homologous receiver domain MADE_1006855 SM00862 Transcriptional regulatory protein, C terminal MADE_1006925 SM00363 S4 RNA-binding domain MADE_1006935 SM01266 MADE_1006935 MADE_1006950 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins MADE_1006960 SM00382 ATPases associated with a variety of cellular activities MADE_1007025 SM00421 helix_turn_helix, Lux Regulon MADE_1007025 SM00448 cheY-homologous receiver domain MADE_1007030 SM00448 cheY-homologous receiver domain MADE_1007045 SM00387 Histidine kinase-like ATPases MADE_1007045 SM00388 His Kinase A (phosphoacceptor) domain MADE_1007060 SM00271 DnaJ molecular chaperone homology domain MADE_1007070 SM00052 Putative diguanylate phosphodiesterase MADE_1007070 SM00091 PAS domain MADE_1007070 SM00267 diguanylate cyclase MADE_1007090 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain MADE_1007095 SM00851 MGS-like domain MADE_1007095 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MADE_1007140 SM00116 Domain in cystathionine beta-synthase and other proteins. MADE_1007140 SM01091 Transporter associated domain MADE_1007155 SM00729 Elongator protein 3, MiaB family, Radical SAM MADE_1007210 SM00903 Flavin reductase like domain MADE_1007255 SM00729 Elongator protein 3, MiaB family, Radical SAM MADE_1007255 SM00876 Biotin and Thiamin Synthesis associated domain MADE_1007280 SM00226 Low molecular weight phosphatase family MADE_1007290 SM00382 ATPases associated with a variety of cellular activities MADE_1007310 SM00382 ATPases associated with a variety of cellular activities MADE_1007315 SM00729 Elongator protein 3, MiaB family, Radical SAM MADE_1007325 SM00028 Tetratricopeptide repeats MADE_1007325 SM00448 cheY-homologous receiver domain MADE_1007350 SM00052 Putative diguanylate phosphodiesterase MADE_1007350 SM00267 diguanylate cyclase MADE_1007455 SM00382 ATPases associated with a variety of cellular activities MADE_1007505 SM00710 Parallel beta-helix repeats MADE_1007575 SM00829 Enoylreductase MADE_1007645 SM00937 MADE_1007645 MADE_1007700 SM00838 Elongation factor G C-terminus MADE_1007700 SM00889 Elongation factor G, domain IV MADE_1007715 SM00219 Tyrosine kinase, catalytic domain MADE_1007715 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain MADE_1007725 SM00460 Transglutaminase/protease-like homologues MADE_1007755 SM00052 Putative diguanylate phosphodiesterase MADE_1007755 SM00267 diguanylate cyclase MADE_1007830 SM00347 helix_turn_helix multiple antibiotic resistance protein MADE_1007840 SM00864 Tubulin/FtsZ family, GTPase domain MADE_1007840 SM00865 Tubulin/FtsZ family, C-terminal domain MADE_1007850 SM00052 Putative diguanylate phosphodiesterase MADE_1007850 SM00091 PAS domain MADE_1007850 SM00267 diguanylate cyclase MADE_1007860 SM00052 Putative diguanylate phosphodiesterase MADE_1007860 SM00267 diguanylate cyclase MADE_1007890 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MADE_1007905 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MADE_1007905 SM00091 PAS domain MADE_1007905 SM00267 diguanylate cyclase MADE_1007935 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MADE_1007940 SM01092 CO dehydrogenase flavoprotein C-terminal domain MADE_1007975 SM00448 cheY-homologous receiver domain MADE_1007985 SM00267 diguanylate cyclase MADE_1007985 SM00448 cheY-homologous receiver domain MADE_1007990 SM00387 Histidine kinase-like ATPases MADE_1007990 SM00388 His Kinase A (phosphoacceptor) domain MADE_1007990 SM00448 cheY-homologous receiver domain MADE_1008080 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MADE_1008150 SM00052 Putative diguanylate phosphodiesterase MADE_1008150 SM00267 diguanylate cyclase MADE_1008210 SM00710 Parallel beta-helix repeats MADE_1008220 SM00382 ATPases associated with a variety of cellular activities MADE_1008280 SM00873 B3/4 domain MADE_1008280 SM00874 tRNA synthetase B5 domain MADE_1008280 SM00896 Ferredoxin-fold anticodon binding domain MADE_1008285 SM00411 bacterial (prokaryotic) histone like domain MADE_1008320 SM00487 DEAD-like helicases superfamily MADE_1008320 SM00490 helicase superfamily c-terminal domain MADE_1008320 SM00982 MADE_1008320 MADE_1008320 SM01058 CarD-like/TRCF domain MADE_1008340 SM00387 Histidine kinase-like ATPases MADE_1008345 SM00897 FIST N domain MADE_1008345 SM01204 MADE_1008345 MADE_1008430 SM00878 Biotin carboxylase C-terminal domain MADE_1008450 SM00422 helix_turn_helix, mercury resistance MADE_1008470 SM00062 Bacterial periplasmic substrate-binding proteins MADE_1008470 SM00267 diguanylate cyclase MADE_1008485 SM00387 Histidine kinase-like ATPases MADE_1008485 SM00388 His Kinase A (phosphoacceptor) domain MADE_1008485 SM00448 cheY-homologous receiver domain MADE_1008495 SM00116 Domain in cystathionine beta-synthase and other proteins. MADE_1008520 SM00267 diguanylate cyclase MADE_1008525 SM00342 helix_turn_helix, arabinose operon control protein MADE_1008535 SM00382 ATPases associated with a variety of cellular activities MADE_1008535 SM00487 DEAD-like helicases superfamily MADE_1008535 SM00490 helicase superfamily c-terminal domain MADE_1008535 SM00847 Helicase associated domain (HA2) Add an annotation MADE_1008550 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase MADE_1008555 SM00829 Enoylreductase MADE_1008565 SM00479 MADE_1008565 MADE_1008585 SM00028 Tetratricopeptide repeats MADE_1008650 SM00587 ZnF_C4 abd HLH domain containing kinases domain MADE_1008655 SM00316 Ribosomal protein S1-like RNA-binding domain MADE_1008660 SM00363 S4 RNA-binding domain MADE_1008695 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. MADE_1008710 SM00825 Beta-ketoacyl synthase MADE_1008750 SM00267 diguanylate cyclase MADE_1008810 SM01007 Class II Aldolase and Adducin N-terminal domain MADE_1008815 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MADE_1008900 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MADE_1008900 SM00091 PAS domain MADE_1008900 SM00387 Histidine kinase-like ATPases MADE_1008900 SM00388 His Kinase A (phosphoacceptor) domain MADE_1008900 SM00448 cheY-homologous receiver domain MADE_1008905 SM00448 cheY-homologous receiver domain MADE_1008905 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MADE_1008915 SM00316 Ribosomal protein S1-like RNA-binding domain MADE_1008940 SM01387 MADE_1008940 MADE_1008945 SM00363 S4 RNA-binding domain MADE_1008965 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. MADE_1008975 SM00448 cheY-homologous receiver domain MADE_1009040 SM00729 Elongator protein 3, MiaB family, Radical SAM MADE_1009080 SM00382 ATPases associated with a variety of cellular activities MADE_1009110 SM00267 diguanylate cyclase MADE_1009155 SM00382 ATPases associated with a variety of cellular activities MADE_1009180 SM00347 helix_turn_helix multiple antibiotic resistance protein MADE_1009200 SM00507 HNH nucleases MADE_1009350 SM00028 Tetratricopeptide repeats MADE_1009370 SM00771 ZipA, C-terminal domain (FtsZ-binding) MADE_1009395 SM00849 Metallo-beta-lactamase superfamily MADE_1009430 SM00729 Elongator protein 3, MiaB family, Radical SAM MADE_1009495 SM00861 Transketolase, pyrimidine binding domain MADE_1009510 SM00881 CoA binding domain MADE_1009555 SM00642 Alpha-amylase domain MADE_1009560 SM00642 Alpha-amylase domain MADE_1009570 SM00642 Alpha-amylase domain MADE_1009575 SM00354 helix_turn _helix lactose operon repressor MADE_1009695 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MADE_1009710 SM00387 Histidine kinase-like ATPases MADE_1009715 SM00448 cheY-homologous receiver domain MADE_1009715 SM00850 LytTr DNA-binding domain MADE_1009750 SM00829 Enoylreductase MADE_1009755 SM00829 Enoylreductase MADE_1009760 SM00822 MADE_1009760 MADE_1009780 SM00020 Trypsin-like serine protease MADE_1009805 SM00028 Tetratricopeptide repeats MADE_1009805 SM00448 cheY-homologous receiver domain MADE_1009815 SM00450 Rhodanese Homology Domain MADE_1009820 SM00054 EF-hand, calcium binding motif MADE_1009825 SM00487 DEAD-like helicases superfamily MADE_1009825 SM00490 helicase superfamily c-terminal domain MADE_1009830 SM00882 Coenzyme A transferase MADE_1009835 SM00882 Coenzyme A transferase MADE_1009850 SM00387 Histidine kinase-like ATPases MADE_1009905 SM00861 Transketolase, pyrimidine binding domain MADE_1009920 SM00220 Serine/Threonine protein kinases, catalytic domain MADE_1009960 SM00829 Enoylreductase MADE_1009965 SM01060 MADE_1009965 MADE_1009975 SM00829 Enoylreductase MADE_1009985 SM00642 Alpha-amylase domain MADE_1009995 SM00244 prohibitin homologues MADE_1010015 SM00840 MADE_1010015 MADE_1010040 SM00257 Lysin motif MADE_1010045 SM00849 Metallo-beta-lactamase superfamily MADE_1010080 SM00974 MADE_1010080 MADE_1010130 SM00945 ProQ/FINO family MADE_1010135 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MADE_1010135 SM00245 tail specific protease MADE_1010175 SM00981 MADE_1010175 MADE_1010185 SM00382 ATPases associated with a variety of cellular activities MADE_1010250 SM00422 helix_turn_helix, mercury resistance MADE_1010330 SM00342 helix_turn_helix, arabinose operon control protein MADE_1010340 SM00422 helix_turn_helix, mercury resistance MADE_1010460 SM00100 Cyclic nucleotide-monophosphate binding domain MADE_1010460 SM00419 helix_turn_helix, cAMP Regulatory protein MADE_1010510 SM00450 Rhodanese Homology Domain MADE_1010520 SM01144 MADE_1010520 MADE_1010575 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MADE_1010575 SM00465 GIY-YIG type nucleases (URI domain) MADE_1010705 SM00382 ATPases associated with a variety of cellular activities MADE_1010710 SM01002 Alanine dehydrogenase/PNT, C-terminal domain MADE_1010710 SM01003 Alanine dehydrogenase/PNT, N-terminal domain MADE_1010715 SM00344 helix_turn_helix ASNC type MADE_1010725 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family MADE_1010730 SM00028 Tetratricopeptide repeats MADE_1010800 SM00052 Putative diguanylate phosphodiesterase MADE_1010800 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MADE_1010800 SM00267 diguanylate cyclase MADE_1010905 SM00421 helix_turn_helix, Lux Regulon MADE_1010905 SM00448 cheY-homologous receiver domain MADE_1010935 SM00642 Alpha-amylase domain MADE_1010945 SM00852 Probable molybdopterin binding domain MADE_1010965 SM00382 ATPases associated with a variety of cellular activities MADE_1011035 SM00530 Helix-turn-helix XRE-family like proteins MADE_1011525 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MADE_1011530 SM00450 Rhodanese Homology Domain MADE_1011545 SM00382 ATPases associated with a variety of cellular activities MADE_1011545 SM00448 cheY-homologous receiver domain MADE_1011555 SM00387 Histidine kinase-like ATPases MADE_1011555 SM00388 His Kinase A (phosphoacceptor) domain MADE_1011560 SM00448 cheY-homologous receiver domain MADE_1011565 SM00387 Histidine kinase-like ATPases MADE_1011565 SM00388 His Kinase A (phosphoacceptor) domain MADE_1011565 SM00448 cheY-homologous receiver domain MADE_1011635 SM00631 MADE_1011635 MADE_1011640 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MADE_1011655 SM01350 MADE_1011655 MADE_1011660 SM00642 Alpha-amylase domain MADE_1011665 SM00642 Alpha-amylase domain MADE_1011675 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MADE_1011735 SM00749 bacterial OsmY and nodulation domain MADE_1011780 SM00387 Histidine kinase-like ATPases MADE_1011780 SM00388 His Kinase A (phosphoacceptor) domain MADE_1011780 SM00448 cheY-homologous receiver domain MADE_1011805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1011805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MADE_1011830 SM00052 Putative diguanylate phosphodiesterase MADE_1011830 SM00267 diguanylate cyclase MADE_1011840 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MADE_1011845 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MADE_1011845 SM00387 Histidine kinase-like ATPases MADE_1011880 SM00857 Resolvase, N terminal domain MADE_1011915 SM00859 Semialdehyde dehydrogenase, NAD binding domain MADE_1011925 SM01007 Class II Aldolase and Adducin N-terminal domain MADE_1011930 SM00100 Cyclic nucleotide-monophosphate binding domain MADE_1011930 SM00419 helix_turn_helix, cAMP Regulatory protein MADE_1011950 SM00825 Beta-ketoacyl synthase MADE_1012005 SM00422 helix_turn_helix, mercury resistance MADE_1012010 SM00829 Enoylreductase MADE_1012035 SM00382 ATPases associated with a variety of cellular activities MADE_1012045 SM00387 Histidine kinase-like ATPases MADE_1012045 SM00388 His Kinase A (phosphoacceptor) domain MADE_1012045 SM00448 cheY-homologous receiver domain MADE_1012160 SM00345 helix_turn_helix gluconate operon transcriptional repressor MADE_1012205 SM00341 Helicase and RNase D C-terminal MADE_1012205 SM00474 3'-5' exonuclease MADE_1012235 SM00487 DEAD-like helicases superfamily MADE_1012235 SM00488 MADE_1012235 MADE_1012235 SM00491 MADE_1012235 MADE_1012245 SM00014 Acid phosphatase homologues MADE_1012260 SM00642 Alpha-amylase domain MADE_1012345 SM00363 S4 RNA-binding domain MADE_1012415 SM00861 Transketolase, pyrimidine binding domain MADE_1012470 SM00382 ATPases associated with a variety of cellular activities MADE_1012480 SM00382 ATPases associated with a variety of cellular activities MADE_1012515 SM00358 Double-stranded RNA binding motif MADE_1012515 SM00535 Ribonuclease III family MADE_1012525 SM00838 Elongation factor G C-terminus MADE_1012580 SM00938 Nitrogen regulatory protein P-II MADE_1012670 SM00904 Riboflavin kinase MADE_1012715 SM00563 Phosphate acyltransferases MADE_1012735 SM00411 bacterial (prokaryotic) histone like domain MADE_1012745 SM00382 ATPases associated with a variety of cellular activities MADE_1012745 SM00464 Found in ATP-dependent protease La (LON) MADE_1012750 SM00382 ATPases associated with a variety of cellular activities MADE_1012750 SM00994 ClpX C4-type zinc finger MADE_1012750 SM01086 C-terminal, D2-small domain, of ClpB protein MADE_1012870 SM00562 MADE_1012870 MADE_1012900 SM00382 ATPases associated with a variety of cellular activities MADE_1012945 SM00850 LytTr DNA-binding domain MADE_1012960 SM01323 MADE_1012960 MADE_1013025 SM00382 ATPases associated with a variety of cellular activities MADE_1013045 SM00098 Alkaline phosphatase homologues MADE_1013050 SM00260 Two component signalling adaptor domain MADE_1013050 SM00448 cheY-homologous receiver domain MADE_1013135 SM00028 Tetratricopeptide repeats MADE_1013230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1013230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MADE_1013255 SM00387 Histidine kinase-like ATPases MADE_1013260 SM00493 MADE_1013260 MADE_1013270 SM00052 Putative diguanylate phosphodiesterase MADE_1013270 SM00267 diguanylate cyclase MADE_1013270 SM00448 cheY-homologous receiver domain MADE_1013275 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MADE_1013275 SM00448 cheY-homologous receiver domain MADE_1013275 SM00911 HWE histidine kinase MADE_1013285 SM00382 ATPases associated with a variety of cellular activities MADE_1013320 SM00091 PAS domain MADE_1013320 SM00267 diguanylate cyclase MADE_1013345 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1013345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MADE_1013360 SM00797 Allophanate hydrolase subunit 2 MADE_1013365 SM00796 Allophanate hydrolase subunit 1 MADE_1013415 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MADE_1013420 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MADE_1013460 SM00829 Enoylreductase MADE_1013475 SM00855 Phosphoglycerate mutase family MADE_1013500 SM00729 Elongator protein 3, MiaB family, Radical SAM MADE_1013505 SM00382 ATPases associated with a variety of cellular activities MADE_1013535 SM00852 Probable molybdopterin binding domain MADE_1013655 SM00052 Putative diguanylate phosphodiesterase MADE_1013655 SM00267 diguanylate cyclase MADE_1013660 SM00849 Metallo-beta-lactamase superfamily MADE_1013685 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. MADE_1013695 SM00563 Phosphate acyltransferases MADE_1013735 SM00342 helix_turn_helix, arabinose operon control protein MADE_1013770 SM00893 Electron transfer flavoprotein domain MADE_1013775 SM00893 Electron transfer flavoprotein domain MADE_1013785 SM00528 Domain in histone-like proteins of HNS family MADE_1013795 SM00984 UDP binding domain MADE_1013845 SM00672 Putative lipopolysaccharide-modifying enzyme. MADE_1013935 SM00662 RNA polymerases D MADE_1013940 SM00363 S4 RNA-binding domain MADE_1013940 SM01390 MADE_1013940 MADE_1014005 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. MADE_1014010 SM01374 MADE_1014010 MADE_1014040 SM00953 MADE_1014040 MADE_1014060 SM00448 cheY-homologous receiver domain MADE_1014060 SM00862 Transcriptional regulatory protein, C terminal MADE_1014065 SM00387 Histidine kinase-like ATPases MADE_1014065 SM00388 His Kinase A (phosphoacceptor) domain MADE_1014120 SM01092 CO dehydrogenase flavoprotein C-terminal domain MADE_1014125 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MADE_1014170 SM01322 MADE_1014170 MADE_1014215 SM00487 DEAD-like helicases superfamily MADE_1014215 SM00490 helicase superfamily c-terminal domain MADE_1014235 SM00028 Tetratricopeptide repeats MADE_1014235 SM00387 Histidine kinase-like ATPases MADE_1014235 SM00388 His Kinase A (phosphoacceptor) domain MADE_1014235 SM00448 cheY-homologous receiver domain MADE_1014245 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MADE_1014245 SM00387 Histidine kinase-like ATPases MADE_1014245 SM00388 His Kinase A (phosphoacceptor) domain MADE_1014245 SM00448 cheY-homologous receiver domain MADE_1014275 SM00988 UreE urease accessory protein, N-terminal domain MADE_1014300 SM00382 ATPases associated with a variety of cellular activities MADE_1014330 SM00387 Histidine kinase-like ATPases MADE_1014330 SM00388 His Kinase A (phosphoacceptor) domain MADE_1014330 SM00448 cheY-homologous receiver domain MADE_1014335 SM00421 helix_turn_helix, Lux Regulon MADE_1014335 SM00448 cheY-homologous receiver domain MADE_1014385 SM01252 MADE_1014385 MADE_1014390 SM01101 MADE_1014390 MADE_1014415 SM00487 DEAD-like helicases superfamily MADE_1014415 SM00490 helicase superfamily c-terminal domain MADE_1014490 SM01011 Aminopeptidase P, N-terminal domain MADE_1014530 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins MADE_1014900 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MADE_1014900 SM00387 Histidine kinase-like ATPases MADE_1014900 SM00388 His Kinase A (phosphoacceptor) domain MADE_1014900 SM00448 cheY-homologous receiver domain MADE_1014985 SM00345 helix_turn_helix gluconate operon transcriptional repressor MADE_1014985 SM00895 MADE_1014985 MADE_1014995 SM00644 MADE_1014995 MADE_1015050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1015055 SM00448 cheY-homologous receiver domain MADE_1015070 SM00073 Histidine Phosphotransfer domain MADE_1015070 SM00260 Two component signalling adaptor domain MADE_1015070 SM00387 Histidine kinase-like ATPases MADE_1015070 SM01231 MADE_1015070 MADE_1015075 SM00448 cheY-homologous receiver domain MADE_1015080 SM00138 Methyltransferase, chemotaxis proteins MADE_1015090 SM00448 cheY-homologous receiver domain MADE_1015095 SM00260 Two component signalling adaptor domain MADE_1015100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1015110 SM00957 SecA DEAD-like domain MADE_1015110 SM00958 SecA preprotein cross-linking domain MADE_1015125 SM00864 Tubulin/FtsZ family, GTPase domain MADE_1015125 SM00865 Tubulin/FtsZ family, C-terminal domain MADE_1015265 SM00028 Tetratricopeptide repeats MADE_1015265 SM00267 diguanylate cyclase MADE_1015275 SM00382 ATPases associated with a variety of cellular activities MADE_1015275 SM00448 cheY-homologous receiver domain MADE_1015280 SM00387 Histidine kinase-like ATPases MADE_1015330 SM00732 Likely ribonuclease with RNase H fold. MADE_1015340 SM00382 ATPases associated with a variety of cellular activities MADE_1015420 SM00530 Helix-turn-helix XRE-family like proteins MADE_1015430 SM00360 RNA recognition motif MADE_1015465 SM00986 Uracil DNA glycosylase superfamily MADE_1015465 SM00987 UreE urease accessory protein, C-terminal domain MADE_1015495 SM00829 Enoylreductase MADE_1015505 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MADE_1015510 SM00226 Low molecular weight phosphatase family MADE_1015525 SM00448 cheY-homologous receiver domain MADE_1015535 SM00448 cheY-homologous receiver domain MADE_1015535 SM00862 Transcriptional regulatory protein, C terminal MADE_1015540 SM00387 Histidine kinase-like ATPases MADE_1015540 SM00388 His Kinase A (phosphoacceptor) domain MADE_1015590 SM00342 helix_turn_helix, arabinose operon control protein MADE_1015645 SM00749 bacterial OsmY and nodulation domain MADE_1015670 SM00421 helix_turn_helix, Lux Regulon MADE_1015670 SM00448 cheY-homologous receiver domain MADE_1015690 SM00345 helix_turn_helix gluconate operon transcriptional repressor MADE_1015690 SM00895 MADE_1015690 MADE_1015720 SM00267 diguanylate cyclase MADE_1015720 SM00448 cheY-homologous receiver domain MADE_1015770 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MADE_1015770 SM00091 PAS domain MADE_1015770 SM00387 Histidine kinase-like ATPases MADE_1015770 SM00388 His Kinase A (phosphoacceptor) domain MADE_1015770 SM00448 cheY-homologous receiver domain MADE_1015775 SM00287 Bacterial SH3 domain homologues MADE_1015775 SM00644 MADE_1015775 MADE_1015820 SM00450 Rhodanese Homology Domain MADE_1015970 SM00448 cheY-homologous receiver domain MADE_1015985 SM01230 MADE_1015985 MADE_1015995 SM00091 PAS domain MADE_1015995 SM00387 Histidine kinase-like ATPases MADE_1015995 SM00388 His Kinase A (phosphoacceptor) domain MADE_1016000 SM00382 ATPases associated with a variety of cellular activities MADE_1016000 SM00448 cheY-homologous receiver domain MADE_1016005 SM00073 Histidine Phosphotransfer domain MADE_1016010 SM00563 Phosphate acyltransferases MADE_1016025 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MADE_1016025 SM00091 PAS domain MADE_1016025 SM00267 diguanylate cyclase MADE_1016035 SM00244 prohibitin homologues MADE_1016045 SM00387 Histidine kinase-like ATPases MADE_1016045 SM00388 His Kinase A (phosphoacceptor) domain MADE_1016045 SM00448 cheY-homologous receiver domain MADE_1016045 SM01358 MADE_1016045 MADE_1016165 SM00642 Alpha-amylase domain MADE_1016245 SM00382 ATPases associated with a variety of cellular activities MADE_1016315 SM00849 Metallo-beta-lactamase superfamily MADE_1016315 SM01027 Beta-Casp domain MADE_1016330 SM00996 S-adenosyl-L-homocysteine hydrolase MADE_1016330 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MADE_1016385 SM00421 helix_turn_helix, Lux Regulon MADE_1016415 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins MADE_1016420 SM00421 helix_turn_helix, Lux Regulon MADE_1016420 SM00448 cheY-homologous receiver domain MADE_1016435 SM00487 DEAD-like helicases superfamily MADE_1016435 SM00490 helicase superfamily c-terminal domain MADE_1016445 SM00052 Putative diguanylate phosphodiesterase MADE_1016445 SM00267 diguanylate cyclase MADE_1016515 SM00966 SpoVT / AbrB like domain MADE_1016585 SM00345 helix_turn_helix gluconate operon transcriptional repressor MADE_1016585 SM00895 MADE_1016585 MADE_1016615 SM00155 Phospholipase D. Active site motifs. MADE_1016645 SM00448 cheY-homologous receiver domain MADE_1016655 SM00387 Histidine kinase-like ATPases MADE_1016660 SM00849 Metallo-beta-lactamase superfamily MADE_1016665 SM00486 DNA polymerase type-B family MADE_1016680 SM00360 RNA recognition motif MADE_1016715 SM00986 Uracil DNA glycosylase superfamily MADE_1016715 SM00987 UreE urease accessory protein, C-terminal domain MADE_1016720 SM00052 Putative diguanylate phosphodiesterase MADE_1016720 SM00267 diguanylate cyclase MADE_1016720 SM00448 cheY-homologous receiver domain MADE_1016840 SM00487 DEAD-like helicases superfamily MADE_1016855 SM00530 Helix-turn-helix XRE-family like proteins MADE_1016935 SM00173 Ras subfamily of RAS small GTPases MADE_1016935 SM00175 Rab subfamily of small GTPases MADE_1016940 SM00052 Putative diguanylate phosphodiesterase MADE_1016940 SM00267 diguanylate cyclase MADE_1016950 SM00563 Phosphate acyltransferases MADE_1016955 SM00563 Phosphate acyltransferases MADE_1017375 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1018015 SM00967 RNA 2'-O ribose methyltransferase substrate binding MADE_1018020 SM00316 Ribosomal protein S1-like RNA-binding domain MADE_1018020 SM00357 Cold shock protein domain MADE_1018020 SM00955 MADE_1018020 MADE_1018065 SM00671 Sel1-like repeats. MADE_1018105 SM00387 Histidine kinase-like ATPases MADE_1018105 SM00388 His Kinase A (phosphoacceptor) domain MADE_1018105 SM00448 cheY-homologous receiver domain MADE_1018130 SM00344 helix_turn_helix ASNC type MADE_1018140 SM00357 Cold shock protein domain MADE_1018170 SM00448 cheY-homologous receiver domain MADE_1018180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MADE_1018180 SM00387 Histidine kinase-like ATPases MADE_1018180 SM00388 His Kinase A (phosphoacceptor) domain MADE_1018185 SM00448 cheY-homologous receiver domain MADE_1018195 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MADE_1018255 SM00382 ATPases associated with a variety of cellular activities MADE_1018260 SM00421 helix_turn_helix, Lux Regulon MADE_1018285 SM00382 ATPases associated with a variety of cellular activities MADE_1018285 SM01086 C-terminal, D2-small domain, of ClpB protein MADE_1018300 SM00487 DEAD-like helicases superfamily MADE_1018300 SM00490 helicase superfamily c-terminal domain MADE_1018315 SM00919 Malic enzyme, NAD binding domain MADE_1018315 SM01274 MADE_1018315 MADE_1018365 SM00052 Putative diguanylate phosphodiesterase MADE_1018380 SM00382 ATPases associated with a variety of cellular activities MADE_1018385 SM00382 ATPases associated with a variety of cellular activities MADE_1018385 SM00962 SRP54-type protein, GTPase domain MADE_1018385 SM00963 SRP54-type protein, helical bundle domain MADE_1018455 SM00052 Putative diguanylate phosphodiesterase MADE_1018470 SM00382 ATPases associated with a variety of cellular activities MADE_1018475 SM00448 cheY-homologous receiver domain MADE_1018475 SM00862 Transcriptional regulatory protein, C terminal MADE_1018480 SM00387 Histidine kinase-like ATPases MADE_1018480 SM00388 His Kinase A (phosphoacceptor) domain MADE_1018490 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. MADE_1018505 SM00116 Domain in cystathionine beta-synthase and other proteins. MADE_1018540 SM00838 Elongation factor G C-terminus MADE_1018540 SM00889 Elongation factor G, domain IV MADE_1018935 SM00849 Metallo-beta-lactamase superfamily MADE_1018955 SM00387 Histidine kinase-like ATPases MADE_1018955 SM00388 His Kinase A (phosphoacceptor) domain MADE_1018965 SM00382 ATPases associated with a variety of cellular activities MADE_1018975 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1018980 SM00387 Histidine kinase-like ATPases MADE_1018985 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MADE_1019045 SM00354 helix_turn _helix lactose operon repressor MADE_1019055 SM00382 ATPases associated with a variety of cellular activities MADE_1019060 SM00382 ATPases associated with a variety of cellular activities MADE_1019085 SM00382 ATPases associated with a variety of cellular activities MADE_1019120 SM00267 diguanylate cyclase MADE_1019170 SM00116 Domain in cystathionine beta-synthase and other proteins. MADE_1019185 SM00867 YceI-like domain MADE_1019220 SM00829 Enoylreductase MADE_1019225 SM00267 diguanylate cyclase MADE_1019230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MADE_1019230 SM00387 Histidine kinase-like ATPases MADE_1019230 SM00388 His Kinase A (phosphoacceptor) domain MADE_1019230 SM00448 cheY-homologous receiver domain MADE_1019245 SM00116 Domain in cystathionine beta-synthase and other proteins. MADE_1019275 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MADE_1019280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MADE_1019280 SM00387 Histidine kinase-like ATPases MADE_1019285 SM00382 ATPases associated with a variety of cellular activities MADE_1019305 SM00421 helix_turn_helix, Lux Regulon MADE_1019305 SM00448 cheY-homologous receiver domain MADE_1019310 SM00852 Probable molybdopterin binding domain MADE_1019350 SM00729 Elongator protein 3, MiaB family, Radical SAM MADE_1019400 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MADE_1019400 SM00382 ATPases associated with a variety of cellular activities MADE_1019425 SM00220 Serine/Threonine protein kinases, catalytic domain MADE_1019425 SM00331 Sigma factor PP2C-like phosphatases MADE_1019425 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain MADE_1019460 SM00420 helix_turn_helix, Deoxyribose operon repressor MADE_1019460 SM01134 MADE_1019460 MADE_1019520 SM01002 Alanine dehydrogenase/PNT, C-terminal domain MADE_1019520 SM01003 Alanine dehydrogenase/PNT, N-terminal domain MADE_1019545 SM00965 Secretin and TonB N terminus short domain MADE_1019605 SM00670 Large family of predicted nucleotide-binding domains MADE_1019630 SM00883 Chaperonin 10 Kd subunit MADE_1019665 SM00878 Biotin carboxylase C-terminal domain MADE_1019690 SM00479 MADE_1019690 MADE_1019690 SM00990 MADE_1019690 MADE_1019720 SM00062 Bacterial periplasmic substrate-binding proteins MADE_1019780 SM00448 cheY-homologous receiver domain MADE_1019780 SM00862 Transcriptional regulatory protein, C terminal MADE_1019790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MADE_1019790 SM00387 Histidine kinase-like ATPases MADE_1019790 SM00388 His Kinase A (phosphoacceptor) domain MADE_1019830 SM00382 ATPases associated with a variety of cellular activities MADE_1019910 SM00867 YceI-like domain MADE_1019970 SM00320 WD40 repeats MADE_1020200 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase MADE_1020305 SM00530 Helix-turn-helix XRE-family like proteins MADE_1020315 SM00530 Helix-turn-helix XRE-family like proteins MADE_1020320 SM00487 DEAD-like helicases superfamily MADE_1020330 SM00487 DEAD-like helicases superfamily MADE_1020330 SM00490 helicase superfamily c-terminal domain MADE_1020345 SM00487 DEAD-like helicases superfamily MADE_1020370 SM00422 helix_turn_helix, mercury resistance MADE_1020405 SM00354 helix_turn _helix lactose operon repressor MADE_1020420 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MADE_1020430 SM01144 MADE_1020430 MADE_1020450 SM00382 ATPases associated with a variety of cellular activities MADE_1020495 SM00470 ParB-like nuclease domain MADE_1020510 SM01228 MADE_1020510 MADE_1020550 SM01234 MADE_1020550