locus-tag class description amad1_00010 PF11638 DnaA N-terminal domain amad1_00010 PF08299 Bacterial dnaA protein helix-turn-helix amad1_00010 PF00308 Bacterial dnaA protein amad1_00015 PF02767 DNA polymerase III beta subunit, central domain amad1_00015 PF02768 DNA polymerase III beta subunit, C-terminal domain amad1_00015 PF00712 DNA polymerase III beta subunit, N-terminal domain amad1_00020 PF02463 RecF/RecN/SMC N terminal domain amad1_00025 PF00204 DNA gyrase B amad1_00025 PF00986 DNA gyrase B subunit, carboxyl terminus amad1_00025 PF18053 DNA gyrase B subunit insert domain amad1_00025 PF01751 Toprim domain amad1_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_00035 PF05746 DALR anticodon binding domain amad1_00035 PF02092 Glycyl-tRNA synthetase beta subunit amad1_00040 PF02091 Glycyl-tRNA synthetase alpha subunit amad1_00045 PF03352 Methyladenine glycosylase amad1_00055 PF04220 Der GTPase activator (YihI) amad1_00065 PF00034 Cytochrome c amad1_00070 PF01926 50S ribosome-binding GTPase amad1_00075 PF01367 5'-3' exonuclease, C-terminal SAM fold amad1_00075 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain amad1_00075 PF00476 DNA polymerase family A amad1_00075 PF01612 3'-5' exonuclease amad1_00085 PF02386 Cation transport protein amad1_00090 PF02080 TrkA-C domain amad1_00090 PF02254 TrkA-N domain amad1_00095 PF01029 NusB family amad1_00095 PF01189 16S rRNA methyltransferase RsmB/F amad1_00100 PF00551 Formyl transferase amad1_00100 PF02911 Formyl transferase, C-terminal domain amad1_00105 PF01327 Polypeptide deformylase amad1_00115 PF02481 DNA recombination-mediator protein A amad1_00115 PF17782 DprA winged helix domain amad1_00120 PF04361 Protein of unknown function (DUF494) amad1_00130 PF01300 Telomere recombination amad1_00135 PF01218 Coproporphyrinogen III oxidase amad1_00140 PF03922 OmpW family amad1_00150 PF18317 Shikimate 5'-dehydrogenase C-terminal domain amad1_00150 PF01488 Shikimate / quinate 5-dehydrogenase amad1_00150 PF08501 Shikimate dehydrogenase substrate binding domain amad1_00155 PF00132 Bacterial transferase hexapeptide (six repeats) amad1_00185 PF14579 Helix-hairpin-helix motif amad1_00185 PF17657 Bacterial DNA polymerase III alpha subunit finger domain amad1_00185 PF02811 PHP domain amad1_00185 PF07733 Bacterial DNA polymerase III alpha NTPase domain amad1_00185 PF01336 OB-fold nucleic acid binding domain amad1_00215 PF02225 PA domain amad1_00215 PF04389 Peptidase family M28 amad1_00220 PF00535 Glycosyl transferase family 2 amad1_00225 PF00440 Bacterial regulatory proteins, tetR family amad1_00230 PF04127 DNA / pantothenate metabolism flavoprotein amad1_00230 PF02441 Flavoprotein amad1_00235 PF04002 RadC-like JAB domain amad1_00255 PF06082 Exopolysaccharide biosynthesis protein YbjH amad1_00260 PF00830 Ribosomal L28 family amad1_00265 PF00471 Ribosomal protein L33 amad1_00275 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain amad1_00275 PF06827 Zinc finger found in FPG and IleRS amad1_00275 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain amad1_00280 PF01467 Cytidylyltransferase-like amad1_00290 PF01075 Glycosyltransferase family 9 (heptosyltransferase) amad1_00305 PF03707 Bacterial signalling protein N terminal repeat amad1_00305 PF00563 EAL domain amad1_00305 PF00990 Diguanylate cyclase, GGDEF domain amad1_00310 PF00155 Aminotransferase class I and II amad1_00315 PF00107 Zinc-binding dehydrogenase amad1_00315 PF08240 Alcohol dehydrogenase GroES-like domain amad1_00320 PF00581 Rhodanese-like domain amad1_00325 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease amad1_00325 PF01694 Rhomboid family amad1_00335 PF04345 Chorismate lyase amad1_00340 PF01040 UbiA prenyltransferase family amad1_00355 PF04380 Membrane fusogenic activity amad1_00360 PF00580 UvrD/REP helicase N-terminal domain amad1_00360 PF13361 UvrD-like helicase C-terminal domain amad1_00365 PF00990 Diguanylate cyclase, GGDEF domain amad1_00365 PF03707 Bacterial signalling protein N terminal repeat amad1_00365 PF00563 EAL domain amad1_00370 PF13442 Cytochrome C oxidase, cbb3-type, subunit III amad1_00400 PF04143 Sulphur transport amad1_00405 PF02082 Transcriptional regulator amad1_00410 PF01925 Sulfite exporter TauE/SafE amad1_00415 PF00753 Metallo-beta-lactamase superfamily amad1_00425 PF00593 TonB dependent receptor amad1_00425 PF07715 TonB-dependent Receptor Plug Domain amad1_00440 PF00005 ABC transporter amad1_00440 PF00664 ABC transporter transmembrane region amad1_00445 PF00664 ABC transporter transmembrane region amad1_00445 PF00005 ABC transporter amad1_00455 PF01654 Cytochrome bd terminal oxidase subunit I amad1_00465 PF01206 Sulfurtransferase TusA amad1_00465 PF00581 Rhodanese-like domain amad1_00470 PF00753 Metallo-beta-lactamase superfamily amad1_00475 PF00578 AhpC/TSA family amad1_00475 PF10417 C-terminal domain of 1-Cys peroxiredoxin amad1_00485 PF00578 AhpC/TSA family amad1_00505 PF00873 AcrB/AcrD/AcrF family amad1_00515 PF02028 BCCT, betaine/carnitine/choline family transporter amad1_00560 PF00145 C-5 cytosine-specific DNA methylase amad1_00565 PF00271 Helicase conserved C-terminal domain amad1_00565 PF04851 Type III restriction enzyme, res subunit amad1_00565 PF17757 UvrB interaction domain amad1_00565 PF02151 UvrB/uvrC motif amad1_00565 PF12344 Ultra-violet resistance protein B amad1_00575 PF13533 Biotin-lipoyl like amad1_00580 PF00005 ABC transporter amad1_00590 PF07715 TonB-dependent Receptor Plug Domain amad1_00590 PF00593 TonB dependent receptor amad1_00600 PF02770 Acyl-CoA dehydrogenase, middle domain amad1_00600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain amad1_00600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain amad1_00605 PF03466 LysR substrate binding domain amad1_00605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_00610 PF00753 Metallo-beta-lactamase superfamily amad1_00615 PF04317 YcjX-like family, DUF463 amad1_00635 PF02661 Fic/DOC family amad1_00640 PF06968 Biotin and Thiamin Synthesis associated domain amad1_00640 PF04055 Radical SAM superfamily amad1_00645 PF05690 Thiazole biosynthesis protein ThiG amad1_00655 PF00899 ThiF family amad1_00660 PF02581 Thiamine monophosphate synthase amad1_00665 PF13667 ThiC-associated domain amad1_00665 PF01964 Radical SAM ThiC family amad1_00670 PF07219 HemY protein N-terminus amad1_00670 PF07719 Tetratricopeptide repeat amad1_00675 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase amad1_00680 PF02602 Uroporphyrinogen-III synthase HemD amad1_00685 PF03900 Porphobilinogen deaminase, C-terminal domain amad1_00685 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain amad1_00690 PF00990 Diguanylate cyclase, GGDEF domain amad1_00690 PF17151 Periplasmic sensor domain amad1_00705 PF00625 Guanylate kinase amad1_00710 PF01192 RNA polymerase Rpb6 amad1_00715 PF04607 Region found in RelA / SpoT proteins amad1_00715 PF02824 TGS domain amad1_00715 PF13291 ACT domain amad1_00720 PF01042 Endoribonuclease L-PSP amad1_00725 PF00588 SpoU rRNA Methylase family amad1_00725 PF12105 SpoU, rRNA methylase, C-terminal amad1_00730 PF00270 DEAD/DEAH box helicase amad1_00730 PF17191 RecG wedge domain amad1_00730 PF00271 Helicase conserved C-terminal domain amad1_00735 PF04445 Putative SAM-dependent methyltransferase amad1_00740 PF08534 Redoxin amad1_00760 PF00528 Binding-protein-dependent transport system inner membrane component amad1_00765 PF08402 TOBE domain amad1_00765 PF00005 ABC transporter amad1_00770 PF05552 Conserved TM helix amad1_00770 PF00924 Mechanosensitive ion channel amad1_00785 PF13683 Integrase core domain amad1_00795 PF01527 Transposase amad1_00805 PF00873 AcrB/AcrD/AcrF family amad1_00810 PF00529 HlyD membrane-fusion protein of T1SS amad1_00810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion amad1_00830 PF13411 MerR HTH family regulatory protein amad1_00835 PF01527 Transposase amad1_00840 PF00665 Integrase core domain amad1_00840 PF13333 Integrase core domain amad1_00840 PF13276 HTH-like domain amad1_00855 PF04940 Sensors of blue-light using FAD amad1_00855 PF00563 EAL domain amad1_00860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_00860 PF03466 LysR substrate binding domain amad1_00865 PF01810 LysE type translocator amad1_00870 PF00893 Small Multidrug Resistance protein amad1_00885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion amad1_00885 PF00529 HlyD membrane-fusion protein of T1SS amad1_00890 PF00873 AcrB/AcrD/AcrF family amad1_00900 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain amad1_00900 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain amad1_00905 PF00850 Histone deacetylase domain amad1_00920 PF12729 Four helix bundle sensory module for signal transduction amad1_00920 PF00672 HAMP domain amad1_00920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain amad1_00930 PF11737 Protein of unknown function (DUF3300) amad1_00935 PF00925 GTP cyclohydrolase II amad1_00940 PF08448 PAS fold amad1_00940 PF00990 Diguanylate cyclase, GGDEF domain amad1_00940 PF00563 EAL domain amad1_00955 PF00271 Helicase conserved C-terminal domain amad1_00955 PF00570 HRDC domain amad1_00955 PF00270 DEAD/DEAH box helicase amad1_00955 PF16124 RecQ zinc-binding amad1_00955 PF09382 RQC domain amad1_00960 PF00571 CBS domain amad1_00960 PF03448 MgtE intracellular N domain amad1_00960 PF01769 Divalent cation transporter amad1_00965 PF00892 EamA-like transporter family amad1_00970 PF00072 Response regulator receiver domain amad1_00970 PF00990 Diguanylate cyclase, GGDEF domain amad1_00975 PF00580 UvrD/REP helicase N-terminal domain amad1_00975 PF13361 UvrD-like helicase C-terminal domain amad1_00980 PF06426 Serine acetyltransferase, N-terminal amad1_00980 PF00132 Bacterial transferase hexapeptide (six repeats) amad1_00985 PF13419 Haloacid dehalogenase-like hydrolase amad1_01000 PF01678 Diaminopimelate epimerase amad1_01005 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain amad1_01005 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain amad1_01020 PF01569 PAP2 superfamily amad1_01025 PF03737 Aldolase/RraA amad1_01035 PF02441 Flavoprotein amad1_01040 PF08245 Mur ligase middle domain amad1_01040 PF01225 Mur ligase family, catalytic domain amad1_01040 PF02875 Mur ligase family, glutamate ligase domain amad1_01045 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain amad1_01050 PF00719 Inorganic pyrophosphatase amad1_01080 PF17760 UvrA interaction domain amad1_01080 PF17755 UvrA DNA-binding domain amad1_01080 PF00005 ABC transporter amad1_01085 PF07690 Major Facilitator Superfamily amad1_01090 PF13419 Haloacid dehalogenase-like hydrolase amad1_01110 PF00356 Bacterial regulatory proteins, lacI family amad1_01120 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain amad1_01120 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain amad1_01125 PF10509 Galactokinase galactose-binding signature amad1_01125 PF08544 GHMP kinases C terminal amad1_01125 PF00288 GHMP kinases N terminal domain amad1_01130 PF00474 Sodium:solute symporter family amad1_01135 PF00436 Single-strand binding protein family amad1_01150 PF16363 GDP-mannose 4,6 dehydratase amad1_01155 PF16355 Domain of unknown function (DUF4982) amad1_01155 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 amad1_01155 PF00703 Glycosyl hydrolases family 2 amad1_01155 PF02837 Glycosyl hydrolases family 2, sugar binding domain amad1_01155 PF02836 Glycosyl hydrolases family 2, TIM barrel domain amad1_01170 PF02782 FGGY family of carbohydrate kinases, C-terminal domain amad1_01170 PF00370 FGGY family of carbohydrate kinases, N-terminal domain amad1_01175 PF00455 DeoR C terminal sensor domain amad1_01175 PF08220 DeoR-like helix-turn-helix domain amad1_01180 PF16901 C-terminal domain of alpha-glycerophosphate oxidase amad1_01180 PF01266 FAD dependent oxidoreductase amad1_01225 PF13401 AAA domain amad1_01225 PF01471 Putative peptidoglycan binding domain amad1_01235 PF00437 Type II/IV secretion system protein amad1_01235 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain amad1_01240 PF00482 Type II secretion system (T2SS), protein F amad1_01250 PF07963 Prokaryotic N-terminal methylation motif amad1_01250 PF00114 Pilin (bacterial filament) amad1_01255 PF07963 Prokaryotic N-terminal methylation motif amad1_01255 PF00114 Pilin (bacterial filament) amad1_01260 PF07963 Prokaryotic N-terminal methylation motif amad1_01260 PF00114 Pilin (bacterial filament) amad1_01290 PF04085 rod shape-determining protein MreC amad1_01295 PF04093 rod shape-determining protein MreD amad1_01300 PF02545 Maf-like protein amad1_01305 PF00575 S1 RNA binding domain amad1_01305 PF10150 Ribonuclease E/G family amad1_01315 PF00795 Carbon-nitrogen hydrolase amad1_01320 PF01523 Putative modulator of DNA gyrase amad1_01325 PF04751 Protein of unknown function (DUF615) amad1_01330 PF01523 Putative modulator of DNA gyrase amad1_01335 PF02836 Glycosyl hydrolases family 2, TIM barrel domain amad1_01335 PF16353 Domain of unknown function(DUF4981) amad1_01335 PF02929 Beta galactosidase small chain amad1_01335 PF02837 Glycosyl hydrolases family 2, sugar binding domain amad1_01335 PF00703 Glycosyl hydrolases family 2 amad1_01340 PF00486 Transcriptional regulatory protein, C terminal amad1_01340 PF00072 Response regulator receiver domain amad1_01345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_01345 PF00497 Bacterial extracellular solute-binding proteins, family 3 amad1_01345 PF00512 His Kinase A (phospho-acceptor) domain amad1_01350 PF08323 Starch synthase catalytic domain amad1_01350 PF00534 Glycosyl transferases group 1 amad1_01355 PF08468 Methyltransferase small domain N-terminal amad1_01355 PF05175 Methyltransferase small domain amad1_01360 PF02390 Putative methyltransferase amad1_01365 PF00561 alpha/beta hydrolase fold amad1_01370 PF00633 Helix-hairpin-helix motif amad1_01370 PF14815 NUDIX domain amad1_01370 PF00730 HhH-GPD superfamily base excision DNA repair protein amad1_01375 PF04362 Bacterial Fe(2+) trafficking amad1_01385 PF00551 Formyl transferase amad1_01385 PF02911 Formyl transferase, C-terminal domain amad1_01390 PF00672 HAMP domain amad1_01390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_01390 PF00512 His Kinase A (phospho-acceptor) domain amad1_01395 PF00486 Transcriptional regulatory protein, C terminal amad1_01395 PF00072 Response regulator receiver domain amad1_01410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion amad1_01415 PF00873 AcrB/AcrD/AcrF family amad1_01460 PF08031 Berberine and berberine like amad1_01460 PF01565 FAD binding domain amad1_01495 PF00042 Globin amad1_01495 PF00175 Oxidoreductase NAD-binding domain amad1_01495 PF00970 Oxidoreductase FAD-binding domain amad1_01515 PF01750 Hydrogenase maturation protease amad1_01525 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit amad1_01525 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal amad1_01530 PF00374 Nickel-dependent hydrogenase amad1_01540 PF01455 HupF/HypC family amad1_01545 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA amad1_01550 PF02492 CobW/HypB/UreG, nucleotide-binding domain amad1_01555 PF01924 Hydrogenase formation hypA family amad1_01560 PF07503 HypF finger amad1_01560 PF01300 Telomere recombination amad1_01560 PF17788 HypF Kae1-like domain amad1_01560 PF00708 Acylphosphatase amad1_01565 PF02769 AIR synthase related protein, C-terminal domain amad1_01565 PF00586 AIR synthase related protein, N-terminal domain amad1_01570 PF00376 MerR family regulatory protein amad1_01570 PF09278 MerR, DNA binding amad1_01575 PF00403 Heavy-metal-associated domain amad1_01645 PF00529 HlyD membrane-fusion protein of T1SS amad1_01645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion amad1_01650 PF00873 AcrB/AcrD/AcrF family amad1_01655 PF01545 Cation efflux family amad1_01655 PF16916 Dimerisation domain of Zinc Transporter amad1_01665 PF01219 Prokaryotic diacylglycerol kinase amad1_01670 PF08019 Phosphoethanolamine transferase EptA/EptB amad1_01670 PF00884 Sulfatase amad1_01675 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase amad1_01685 PF00535 Glycosyl transferase family 2 amad1_01690 PF00486 Transcriptional regulatory protein, C terminal amad1_01690 PF00072 Response regulator receiver domain amad1_01695 PF00512 His Kinase A (phospho-acceptor) domain amad1_01695 PF00672 HAMP domain amad1_01695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_01725 PF00551 Formyl transferase amad1_01725 PF02911 Formyl transferase, C-terminal domain amad1_01735 PF09278 MerR, DNA binding amad1_01735 PF00376 MerR family regulatory protein amad1_01740 PF00403 Heavy-metal-associated domain amad1_01780 PF13520 Amino acid permease amad1_01790 PF00394 Multicopper oxidase amad1_01790 PF07732 Multicopper oxidase amad1_01790 PF07731 Multicopper oxidase amad1_01825 PF13276 HTH-like domain amad1_01825 PF00665 Integrase core domain amad1_01825 PF13333 Integrase core domain amad1_01850 PF00665 Integrase core domain amad1_01850 PF13276 HTH-like domain amad1_01850 PF13333 Integrase core domain amad1_01860 PF13737 Transposase DDE domain amad1_01880 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family amad1_01880 PF00356 Bacterial regulatory proteins, lacI family amad1_01890 PF01204 Trehalase amad1_01905 PF13419 Haloacid dehalogenase-like hydrolase amad1_01915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_01915 PF08448 PAS fold amad1_01915 PF13426 PAS domain amad1_01915 PF00072 Response regulator receiver domain amad1_01915 PF00512 His Kinase A (phospho-acceptor) domain amad1_01930 PF00356 Bacterial regulatory proteins, lacI family amad1_01935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold amad1_01935 PF02894 Oxidoreductase family, C-terminal alpha/beta domain amad1_01945 PF03825 Nucleoside H+ symporter amad1_01955 PF05199 GMC oxidoreductase amad1_01955 PF00732 GMC oxidoreductase amad1_01970 PF00465 Iron-containing alcohol dehydrogenase amad1_01975 PF01063 Amino-transferase class IV amad1_01980 PF00300 Histidine phosphatase superfamily (branch 1) amad1_01990 PF00694 Aconitase C-terminal domain amad1_01990 PF00330 Aconitase family (aconitate hydratase) amad1_02000 PF00437 Type II/IV secretion system protein amad1_02005 PF00338 Ribosomal protein S10p/S20e amad1_02010 PF00297 Ribosomal protein L3 amad1_02015 PF00573 Ribosomal protein L4/L1 family amad1_02020 PF00276 Ribosomal protein L23 amad1_02025 PF00181 Ribosomal Proteins L2, RNA binding domain amad1_02025 PF03947 Ribosomal Proteins L2, C-terminal domain amad1_02030 PF00203 Ribosomal protein S19 amad1_02035 PF00237 Ribosomal protein L22p/L17e amad1_02040 PF07650 KH domain amad1_02040 PF00189 Ribosomal protein S3, C-terminal domain amad1_02045 PF00252 Ribosomal protein L16p/L10e amad1_02050 PF00831 Ribosomal L29 protein amad1_02055 PF00366 Ribosomal protein S17 amad1_02060 PF13439 Glycosyltransferase Family 4 amad1_02060 PF00534 Glycosyl transferases group 1 amad1_02070 PF00534 Glycosyl transferases group 1 amad1_02070 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) amad1_02090 PF02743 Cache domain amad1_02090 PF00672 HAMP domain amad1_02090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain amad1_02095 PF01432 Peptidase family M3 amad1_02105 PF00551 Formyl transferase amad1_02105 PF01842 ACT domain amad1_02115 PF08482 ATP-dependent helicase C-terminal amad1_02115 PF00270 DEAD/DEAH box helicase amad1_02115 PF04408 Helicase associated domain (HA2) amad1_02115 PF00271 Helicase conserved C-terminal domain amad1_02120 PF13406 Transglycosylase SLT domain amad1_02125 PF00912 Transglycosylase amad1_02125 PF14814 Bifunctional transglycosylase second domain amad1_02125 PF00905 Penicillin binding protein transpeptidase domain amad1_02140 PF05661 Protein of unknown function (DUF808) amad1_02145 PF12833 Helix-turn-helix domain amad1_02155 PF00543 Nitrogen regulatory protein P-II amad1_02160 PF00909 Ammonium Transporter Family amad1_02170 PF04261 Dyp-type peroxidase family amad1_02175 PF00672 HAMP domain amad1_02175 PF00211 Adenylate and Guanylate cyclase catalytic domain amad1_02180 PF00202 Aminotransferase class-III amad1_02185 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain amad1_02185 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain amad1_02200 PF00873 AcrB/AcrD/AcrF family amad1_02210 PF00512 His Kinase A (phospho-acceptor) domain amad1_02210 PF00072 Response regulator receiver domain amad1_02210 PF01627 Hpt domain amad1_02210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_02210 PF00672 HAMP domain amad1_02210 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) amad1_02215 PF03989 DNA gyrase C-terminal domain, beta-propeller amad1_02215 PF00521 DNA gyrase/topoisomerase IV, subunit A amad1_02225 PF00990 Diguanylate cyclase, GGDEF domain amad1_02225 PF13188 PAS domain amad1_02225 PF00563 EAL domain amad1_02225 PF03707 Bacterial signalling protein N terminal repeat amad1_02235 PF00171 Aldehyde dehydrogenase family amad1_02240 PF04958 Arginine N-succinyltransferase beta subunit amad1_02245 PF00202 Aminotransferase class-III amad1_02255 PF00117 Glutamine amidotransferase class-I amad1_02260 PF00579 tRNA synthetases class I (W and Y) amad1_02265 PF00834 Ribulose-phosphate 3 epimerase family amad1_02285 PF02086 D12 class N6 adenine-specific DNA methyltransferase amad1_02295 PF01761 3-dehydroquinate synthase amad1_02300 PF01202 Shikimate kinase amad1_02305 PF07660 Secretin and TonB N terminus short domain amad1_02305 PF11741 AMIN domain amad1_02305 PF00263 Bacterial type II and III secretion system protein amad1_02305 PF03958 Bacterial type II/III secretion system short domain amad1_02330 PF00905 Penicillin binding protein transpeptidase domain amad1_02330 PF17092 Penicillin-binding protein OB-like domain amad1_02330 PF00912 Transglycosylase amad1_02335 PF03949 Malic enzyme, NAD binding domain amad1_02335 PF00390 Malic enzyme, N-terminal domain amad1_02350 PF02798 Glutathione S-transferase, N-terminal domain amad1_02360 PF06628 Catalase-related immune-responsive amad1_02360 PF00199 Catalase amad1_02375 PF03707 Bacterial signalling protein N terminal repeat amad1_02375 PF00563 EAL domain amad1_02375 PF00990 Diguanylate cyclase, GGDEF domain amad1_02385 PF00583 Acetyltransferase (GNAT) family amad1_02385 PF00696 Amino acid kinase family amad1_02390 PF00206 Lyase amad1_02390 PF14698 Argininosuccinate lyase C-terminal amad1_02395 PF00764 Arginosuccinate synthase amad1_02400 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain amad1_02400 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain amad1_02405 PF00696 Amino acid kinase family amad1_02410 PF01118 Semialdehyde dehydrogenase, NAD binding domain amad1_02410 PF02774 Semialdehyde dehydrogenase, dimerisation domain amad1_02415 PF02142 MGS-like domain amad1_02425 PF00486 Transcriptional regulatory protein, C terminal amad1_02425 PF00072 Response regulator receiver domain amad1_02430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_02430 PF16527 Two-component sensor protein CpxA, periplasmic domain amad1_02430 PF00512 His Kinase A (phospho-acceptor) domain amad1_02430 PF00672 HAMP domain amad1_02435 PF12146 Serine aminopeptidase, S33 amad1_02440 PF00588 SpoU rRNA Methylase family amad1_02450 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus amad1_02450 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus amad1_02455 PF02556 Preprotein translocase subunit SecB amad1_02460 PF00462 Glutaredoxin amad1_02465 PF00581 Rhodanese-like domain amad1_02470 PF01551 Peptidase family M23 amad1_02475 PF04748 Divergent polysaccharide deacetylase amad1_02495 PF02666 Phosphatidylserine decarboxylase amad1_02500 PF03193 RsgA GTPase amad1_02505 PF00929 Exonuclease amad1_02515 PF00593 TonB dependent receptor amad1_02515 PF07715 TonB-dependent Receptor Plug Domain amad1_02530 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain amad1_02530 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain amad1_02530 PF00205 Thiamine pyrophosphate enzyme, central domain amad1_02535 PF10369 Small subunit of acetolactate synthase amad1_02545 PF02416 mttA/Hcf106 family amad1_02550 PF02416 mttA/Hcf106 family amad1_02555 PF00902 Sec-independent protein translocase protein (TatC) amad1_02565 PF01026 TatD related DNase amad1_02570 PF00563 EAL domain amad1_02570 PF01590 GAF domain amad1_02570 PF00990 Diguanylate cyclase, GGDEF domain amad1_02570 PF00360 Phytochrome region amad1_02575 PF00490 Delta-aminolevulinic acid dehydratase amad1_02580 PF02541 Ppx/GppA phosphatase family amad1_02585 PF00270 DEAD/DEAH box helicase amad1_02585 PF00271 Helicase conserved C-terminal domain amad1_02590 PF00085 Thioredoxin amad1_02595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain amad1_02595 PF07498 Rho termination factor, N-terminal domain amad1_02595 PF07497 Rho termination factor, RNA-binding domain amad1_02605 PF00072 Response regulator receiver domain amad1_02605 PF00512 His Kinase A (phospho-acceptor) domain amad1_02605 PF09308 LuxQ, periplasmic amad1_02605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_02610 PF06965 Na+/H+ antiporter 1 amad1_02615 PF00731 AIR carboxylase amad1_02620 PF02222 ATP-grasp domain amad1_02620 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain amad1_02630 PF00210 Ferritin-like domain amad1_02635 PF07995 Glucose / Sorbosone dehydrogenase amad1_02640 PF00326 Prolyl oligopeptidase family amad1_02640 PF07676 WD40-like Beta Propeller Repeat amad1_02650 PF00085 Thioredoxin amad1_02665 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) amad1_02670 PF00709 Adenylosuccinate synthetase amad1_02675 PF00171 Aldehyde dehydrogenase family amad1_02695 PF03553 Na+/H+ antiporter family amad1_02700 PF00933 Glycosyl hydrolase family 3 N terminal domain amad1_02710 PF07075 Protein of unknown function (DUF1343) amad1_02715 PF01380 SIS domain amad1_02720 PF01168 Alanine racemase, N-terminal domain amad1_02720 PF00842 Alanine racemase, C-terminal domain amad1_02725 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 amad1_02735 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily amad1_02760 PF03831 PhnA domain amad1_02760 PF08274 PhnA Zinc-Ribbon amad1_02765 PF00583 Acetyltransferase (GNAT) family amad1_02795 PF01381 Helix-turn-helix amad1_02800 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB amad1_02810 PF05016 ParE toxin of type II toxin-antitoxin system, parDE amad1_02835 PF01548 Transposase amad1_02835 PF02371 Transposase IS116/IS110/IS902 family amad1_02875 PF01527 Transposase amad1_02880 PF13333 Integrase core domain amad1_02880 PF00665 Integrase core domain amad1_02880 PF13276 HTH-like domain amad1_02890 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain amad1_02890 PF01488 Shikimate / quinate 5-dehydrogenase amad1_02890 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain amad1_02895 PF02652 L-lactate permease amad1_02910 PF09382 RQC domain amad1_02910 PF00270 DEAD/DEAH box helicase amad1_02910 PF00271 Helicase conserved C-terminal domain amad1_02910 PF00570 HRDC domain amad1_02910 PF16124 RecQ zinc-binding amad1_02935 PF02803 Thiolase, C-terminal domain amad1_02935 PF00108 Thiolase, N-terminal domain amad1_02940 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain amad1_02940 PF00378 Enoyl-CoA hydratase/isomerase amad1_02940 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain amad1_02945 PF01464 Transglycosylase SLT domain amad1_02945 PF14718 Soluble lytic murein transglycosylase L domain amad1_02950 PF00557 Metallopeptidase family M24 amad1_02960 PF00348 Polyprenyl synthetase amad1_02965 PF00829 Ribosomal prokaryotic L21 protein amad1_02970 PF01016 Ribosomal L27 protein amad1_02975 PF01926 50S ribosome-binding GTPase amad1_02975 PF01018 GTP1/OBG amad1_02980 PF00186 Dihydrofolate reductase amad1_02985 PF04545 Sigma-70, region 4 amad1_02985 PF00140 Sigma-70 factor, region 1.2 amad1_02985 PF04539 Sigma-70 region 3 amad1_02985 PF04542 Sigma-70 region 2 amad1_02990 PF01476 LysM domain amad1_02990 PF01551 Peptidase family M23 amad1_02995 PF09335 SNARE associated Golgi protein amad1_03005 PF01142 tRNA pseudouridine synthase D (TruD) amad1_03010 PF02542 YgbB family amad1_03015 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase amad1_03020 PF04977 Septum formation initiator amad1_03030 PF00672 HAMP domain amad1_03030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain amad1_03030 PF17200 Single Cache domain 2 amad1_03040 PF01619 Proline dehydrogenase amad1_03040 PF00171 Aldehyde dehydrogenase family amad1_03040 PF14850 DNA-binding domain of Proline dehydrogenase amad1_03040 PF18327 Proline utilization A proline dehydrogenase N-terminal domain amad1_03065 PF02976 DNA mismatch repair enzyme MutH amad1_03070 PF00293 NUDIX domain amad1_03075 PF00391 PEP-utilising enzyme, mobile domain amad1_03075 PF05524 PEP-utilising enzyme, N-terminal amad1_03075 PF01590 GAF domain amad1_03075 PF02896 PEP-utilising enzyme, TIM barrel domain amad1_03080 PF01925 Sulfite exporter TauE/SafE amad1_03085 PF01790 Prolipoprotein diacylglyceryl transferase amad1_03090 PF00303 Thymidylate synthase amad1_03095 PF00072 Response regulator receiver domain amad1_03100 PF00072 Response regulator receiver domain amad1_03100 PF00990 Diguanylate cyclase, GGDEF domain amad1_03105 PF07690 Major Facilitator Superfamily amad1_03120 PF00849 RNA pseudouridylate synthase amad1_03125 PF18337 RapA N-terminal Tudor like domain amad1_03125 PF00271 Helicase conserved C-terminal domain amad1_03125 PF12137 RNA polymerase recycling family C-terminal amad1_03125 PF18339 RapA N-terminal Tudor like domain 1 amad1_03125 PF00176 SNF2 family N-terminal domain amad1_03140 PF13638 PIN domain amad1_03140 PF02562 PhoH-like protein amad1_03150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases amad1_03150 PF10414 Sirohaem synthase dimerisation region amad1_03155 PF00271 Helicase conserved C-terminal domain amad1_03155 PF03880 DbpA RNA binding domain amad1_03155 PF00270 DEAD/DEAH box helicase amad1_03175 PF02321 Outer membrane efflux protein amad1_03180 PF00293 NUDIX domain amad1_03190 PF00149 Calcineurin-like phosphoesterase amad1_03195 PF05728 Uncharacterised protein family (UPF0227) amad1_03200 PF00204 DNA gyrase B amad1_03200 PF01751 Toprim domain amad1_03200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_03200 PF00986 DNA gyrase B subunit, carboxyl terminus amad1_03210 PF13419 Haloacid dehalogenase-like hydrolase amad1_03235 PF04055 Radical SAM superfamily amad1_03245 PF00152 tRNA synthetases class II (D, K and N) amad1_03250 PF00593 TonB dependent receptor amad1_03250 PF07715 TonB-dependent Receptor Plug Domain amad1_03260 PF13302 Acetyltransferase (GNAT) domain amad1_03265 PF07715 TonB-dependent Receptor Plug Domain amad1_03265 PF07660 Secretin and TonB N terminus short domain amad1_03265 PF00593 TonB dependent receptor amad1_03275 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD amad1_03280 PF05175 Methyltransferase small domain amad1_03290 PF01722 BolA-like protein amad1_03295 PF01569 PAP2 superfamily amad1_03310 PF03861 ANTAR domain amad1_03310 PF08376 Nitrate and nitrite sensing amad1_03320 PF01740 STAS domain amad1_03320 PF00916 Sulfate permease family amad1_03325 PF04324 BFD-like [2Fe-2S] binding domain amad1_03325 PF18267 Rubredoxin NAD+ reductase C-terminal domain amad1_03325 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain amad1_03325 PF01077 Nitrite and sulphite reductase 4Fe-4S domain amad1_03325 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_03335 PF00384 Molybdopterin oxidoreductase amad1_03335 PF01568 Molydopterin dinucleotide binding domain amad1_03335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain amad1_03335 PF04324 BFD-like [2Fe-2S] binding domain amad1_03340 PF10414 Sirohaem synthase dimerisation region amad1_03340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases amad1_03340 PF14824 Sirohaem biosynthesis protein central amad1_03345 PF00591 Glycosyl transferase family, a/b domain amad1_03345 PF02885 Glycosyl transferase family, helical bundle domain amad1_03350 PF13426 PAS domain amad1_03350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain amad1_03350 PF08447 PAS fold amad1_03355 PF00005 ABC transporter amad1_03360 PF00528 Binding-protein-dependent transport system inner membrane component amad1_03365 PF00005 ABC transporter amad1_03380 PF01323 DSBA-like thioredoxin domain amad1_03385 PF07715 TonB-dependent Receptor Plug Domain amad1_03385 PF00593 TonB dependent receptor amad1_03390 PF01636 Phosphotransferase enzyme family amad1_03395 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase amad1_03395 PF12801 4Fe-4S binding domain amad1_03395 PF13746 4Fe-4S dicluster domain amad1_03410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain amad1_03410 PF12806 Acetyl-CoA dehydrogenase C-terminal like amad1_03410 PF02770 Acyl-CoA dehydrogenase, middle domain amad1_03410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain amad1_03425 PF13378 Enolase C-terminal domain-like amad1_03425 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain amad1_03430 PF00596 Class II Aldolase and Adducin N-terminal domain amad1_03440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion amad1_03445 PF00873 AcrB/AcrD/AcrF family amad1_03460 PF02743 Cache domain amad1_03460 PF00672 HAMP domain amad1_03460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain amad1_03465 PF04546 Sigma-70, non-essential region amad1_03465 PF04539 Sigma-70 region 3 amad1_03465 PF00140 Sigma-70 factor, region 1.2 amad1_03465 PF04542 Sigma-70 region 2 amad1_03465 PF03979 Sigma-70 factor, region 1.1 amad1_03465 PF04545 Sigma-70, region 4 amad1_03470 PF08275 DNA primase catalytic core, N-terminal domain amad1_03470 PF10410 DnaB-helicase binding domain of primase amad1_03470 PF01807 CHC2 zinc finger amad1_03470 PF08278 DNA primase DnaG DnaB-binding amad1_03485 PF01165 Ribosomal protein S21 amad1_03490 PF00814 Glycoprotease family amad1_03500 PF02660 Glycerol-3-phosphate acyltransferase amad1_03505 PF02152 Dihydroneopterin aldolase amad1_03515 PF02673 Bacitracin resistance protein BacA amad1_03520 PF01230 HIT domain amad1_03535 PF03594 Benzoate membrane transport protein amad1_03540 PF01381 Helix-turn-helix amad1_03540 PF07883 Cupin domain amad1_03545 PF04381 Putative exonuclease, RdgC amad1_03550 PF00497 Bacterial extracellular solute-binding proteins, family 3 amad1_03550 PF00512 His Kinase A (phospho-acceptor) domain amad1_03550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_03555 PF00072 Response regulator receiver domain amad1_03555 PF00486 Transcriptional regulatory protein, C terminal amad1_03560 PF11808 Phosphate regulon sensor protein PhoR amad1_03560 PF00989 PAS fold amad1_03560 PF00512 His Kinase A (phospho-acceptor) domain amad1_03560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_03565 PF12849 PBP superfamily domain amad1_03585 PF01618 MotA/TolQ/ExbB proton channel family amad1_03590 PF01618 MotA/TolQ/ExbB proton channel family amad1_03595 PF02472 Biopolymer transport protein ExbD/TolR amad1_03600 PF03544 Gram-negative bacterial TonB protein C-terminal amad1_03610 PF00072 Response regulator receiver domain amad1_03615 PF00672 HAMP domain amad1_03615 PF00512 His Kinase A (phospho-acceptor) domain amad1_03615 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) amad1_03615 PF00072 Response regulator receiver domain amad1_03615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_03615 PF01627 Hpt domain amad1_03620 PF00501 AMP-binding enzyme amad1_03620 PF13193 AMP-binding enzyme C-terminal domain amad1_03630 PF07995 Glucose / Sorbosone dehydrogenase amad1_03635 PF00330 Aconitase family (aconitate hydratase) amad1_03635 PF06434 Aconitate hydratase 2 N-terminus amad1_03635 PF11791 Aconitate B N-terminal domain amad1_03640 PF01048 Phosphorylase superfamily amad1_03655 PF00330 Aconitase family (aconitate hydratase) amad1_03655 PF06434 Aconitate hydratase 2 N-terminus amad1_03655 PF11791 Aconitate B N-terminal domain amad1_03665 PF00696 Amino acid kinase family amad1_03665 PF01842 ACT domain amad1_03670 PF00672 HAMP domain amad1_03670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain amad1_03675 PF00149 Calcineurin-like phosphoesterase amad1_03680 PF04379 ApaG domain amad1_03685 PF00398 Ribosomal RNA adenine dimethylase amad1_03690 PF04166 Pyridoxal phosphate biosynthetic protein PdxA amad1_03695 PF00639 PPIC-type PPIASE domain amad1_03695 PF09312 SurA N-terminal domain amad1_03700 PF04453 LPS transport system D amad1_03700 PF03968 OstA-like protein amad1_03705 PF00226 DnaJ domain amad1_03705 PF05099 Tellurite resistance protein TerB amad1_03710 PF02899 Phage integrase, N-terminal SAM-like domain amad1_03710 PF00589 Phage integrase family amad1_03715 PF13098 Thioredoxin-like domain amad1_03715 PF10411 Disulfide bond isomerase protein N-terminus amad1_03720 PF17768 RecJ OB domain amad1_03720 PF02272 DHHA1 domain amad1_03720 PF01368 DHH family amad1_03730 PF11967 Recombination protein O N terminal amad1_03730 PF02565 Recombination protein O C terminal amad1_03735 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ amad1_03740 PF01648 4'-phosphopantetheinyl transferase superfamily amad1_03745 PF05958 tRNA (Uracil-5-)-methyltransferase amad1_03750 PF02824 TGS domain amad1_03750 PF04607 Region found in RelA / SpoT proteins amad1_03750 PF13291 ACT domain amad1_03755 PF03819 MazG nucleotide pyrophosphohydrolase domain amad1_03790 PF00501 AMP-binding enzyme amad1_03790 PF13193 AMP-binding enzyme C-terminal domain amad1_03800 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase amad1_03810 PF00535 Glycosyl transferase family 2 amad1_03830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_03830 PF08521 Two-component sensor kinase N-terminal amad1_03830 PF00512 His Kinase A (phospho-acceptor) domain amad1_03835 PF00072 Response regulator receiver domain amad1_03835 PF00486 Transcriptional regulatory protein, C terminal amad1_03845 PF00572 Ribosomal protein L13 amad1_03850 PF00380 Ribosomal protein S9/S16 amad1_03855 PF00355 Rieske [2Fe-2S] domain amad1_03855 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal amad1_03860 PF00032 Cytochrome b(C-terminal)/b6/petD amad1_03860 PF00033 Cytochrome b/b6/petB amad1_03865 PF02167 Cytochrome C1 family amad1_03870 PF02798 Glutathione S-transferase, N-terminal domain amad1_03870 PF00043 Glutathione S-transferase, C-terminal domain amad1_03875 PF04386 Stringent starvation protein B amad1_03880 PF00571 CBS domain amad1_03880 PF01769 Divalent cation transporter amad1_03880 PF03448 MgtE intracellular N domain amad1_03885 PF00381 PTS HPr component phosphorylation site amad1_03890 PF03668 P-loop ATPase protein family amad1_03895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 amad1_03900 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein amad1_03905 PF04552 Sigma-54, DNA binding domain amad1_03905 PF04963 Sigma-54 factor, core binding domain amad1_03905 PF00309 Sigma-54 factor, Activator interacting domain (AID) amad1_03910 PF12399 Branched-chain amino acid ATP-binding cassette transporter amad1_03910 PF00005 ABC transporter amad1_03915 PF03968 OstA-like protein amad1_03930 PF00571 CBS domain amad1_03930 PF01380 SIS domain amad1_03935 PF01699 Sodium/calcium exchanger protein amad1_03940 PF00005 ABC transporter amad1_03945 PF02405 Permease MlaE amad1_03950 PF02470 MlaD protein amad1_03955 PF05494 MlaC protein amad1_03965 PF01722 BolA-like protein amad1_03970 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) amad1_03975 PF13180 PDZ domain amad1_03980 PF00595 PDZ domain amad1_03980 PF13180 PDZ domain amad1_03990 PF03969 AFG1-like ATPase amad1_03995 PF01709 Transcriptional regulator amad1_04015 PF07549 SecD/SecF GG Motif amad1_04015 PF02355 Protein export membrane protein amad1_04015 PF07549 SecD/SecF GG Motif amad1_04015 PF02355 Protein export membrane protein amad1_04020 PF02080 TrkA-C domain amad1_04020 PF00999 Sodium/hydrogen exchanger family amad1_04020 PF03471 Transporter associated domain amad1_04025 PF00593 TonB dependent receptor amad1_04025 PF07715 TonB-dependent Receptor Plug Domain amad1_04030 PF00892 EamA-like transporter family amad1_04040 PF00072 Response regulator receiver domain amad1_04040 PF00512 His Kinase A (phospho-acceptor) domain amad1_04040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_04040 PF09308 LuxQ, periplasmic amad1_04045 PF13458 Periplasmic binding protein amad1_04060 PF02772 S-adenosylmethionine synthetase, central domain amad1_04060 PF00438 S-adenosylmethionine synthetase, N-terminal domain amad1_04060 PF02773 S-adenosylmethionine synthetase, C-terminal domain amad1_04065 PF00456 Transketolase, thiamine diphosphate binding domain amad1_04065 PF02780 Transketolase, C-terminal domain amad1_04065 PF02779 Transketolase, pyrimidine binding domain amad1_04070 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain amad1_04070 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain amad1_04075 PF00162 Phosphoglycerate kinase amad1_04080 PF00274 Fructose-bisphosphate aldolase class-I amad1_04090 PF00529 HlyD membrane-fusion protein of T1SS amad1_04090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion amad1_04095 PF00873 AcrB/AcrD/AcrF family amad1_04100 PF02321 Outer membrane efflux protein amad1_04105 PF07676 WD40-like Beta Propeller Repeat amad1_04105 PF00326 Prolyl oligopeptidase family amad1_04110 PF02541 Ppx/GppA phosphatase family amad1_04115 PF17941 Polyphosphate kinase C-terminal domain 1 amad1_04115 PF13090 Polyphosphate kinase C-terminal domain 2 amad1_04115 PF02503 Polyphosphate kinase middle domain amad1_04115 PF13089 Polyphosphate kinase N-terminal domain amad1_04125 PF00528 Binding-protein-dependent transport system inner membrane component amad1_04130 PF00528 Binding-protein-dependent transport system inner membrane component amad1_04135 PF00005 ABC transporter amad1_04140 PF01895 PhoU domain amad1_04145 PF01384 Phosphate transporter family amad1_04155 PF03466 LysR substrate binding domain amad1_04155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_04165 PF03006 Haemolysin-III related amad1_04170 PF01047 MarR family amad1_04175 PF02566 OsmC-like protein amad1_04180 PF01433 Peptidase family M1 domain amad1_04190 PF09186 Domain of unknown function (DUF1949) amad1_04190 PF01205 Uncharacterized protein family UPF0029 amad1_04200 PF13426 PAS domain amad1_04200 PF08447 PAS fold amad1_04200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain amad1_04210 PF12320 Type 5 capsule protein repressor C-terminal domain amad1_04210 PF00149 Calcineurin-like phosphoesterase amad1_04215 PF13476 AAA domain amad1_04230 PF00375 Sodium:dicarboxylate symporter family amad1_04235 PF00491 Arginase family amad1_04240 PF01979 Amidohydrolase family amad1_04245 PF00392 Bacterial regulatory proteins, gntR family amad1_04245 PF07702 UTRA domain amad1_04255 PF00221 Aromatic amino acid lyase amad1_04285 PF12848 ABC transporter amad1_04285 PF00005 ABC transporter amad1_04310 PF00924 Mechanosensitive ion channel amad1_04325 PF01527 Transposase amad1_04330 PF00665 Integrase core domain amad1_04330 PF13276 HTH-like domain amad1_04330 PF13333 Integrase core domain amad1_04355 PF00589 Phage integrase family amad1_04360 PF13007 Transposase C of IS166 homeodomain amad1_04360 PF03050 Transposase IS66 family amad1_04360 PF13817 IS66 C-terminal element amad1_04360 PF13005 zinc-finger binding domain of transposase IS66 amad1_04405 PF00665 Integrase core domain amad1_04410 PF01695 IstB-like ATP binding protein amad1_04420 PF00665 Integrase core domain amad1_04420 PF13333 Integrase core domain amad1_04420 PF13276 HTH-like domain amad1_04430 PF02384 N-6 DNA Methylase amad1_04435 PF12161 HsdM N-terminal domain amad1_04435 PF02384 N-6 DNA Methylase amad1_04445 PF11867 Domain of unknown function (DUF3387) amad1_04445 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) amad1_04445 PF18766 SWI2/SNF2 ATPase amad1_04460 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) amad1_04490 PF04172 LrgB-like family amad1_04495 PF00072 Response regulator receiver domain amad1_04520 PF04055 Radical SAM superfamily amad1_04520 PF06969 HemN C-terminal domain amad1_04525 PF01725 Ham1 family amad1_04530 PF00270 DEAD/DEAH box helicase amad1_04530 PF00271 Helicase conserved C-terminal domain amad1_04535 PF01743 Poly A polymerase head domain amad1_04535 PF12627 Probable RNA and SrmB- binding site of polymerase A amad1_04540 PF13401 AAA domain amad1_04540 PF01471 Putative peptidoglycan binding domain amad1_04550 PF01966 HD domain amad1_04550 PF11871 Domain of unknown function (DUF3391) amad1_04555 PF00694 Aconitase C-terminal domain amad1_04560 PF00330 Aconitase family (aconitate hydratase) amad1_04565 PF00180 Isocitrate/isopropylmalate dehydrogenase amad1_04570 PF00682 HMGL-like amad1_04570 PF08502 LeuA allosteric (dimerisation) domain amad1_04580 PF00113 Enolase, C-terminal TIM barrel domain amad1_04580 PF03952 Enolase, N-terminal domain amad1_04585 PF00117 Glutamine amidotransferase class-I amad1_04585 PF06418 CTP synthase N-terminus amad1_04590 PF05188 MutS domain II amad1_04590 PF01624 MutS domain I amad1_04590 PF00488 MutS domain V amad1_04590 PF05192 MutS domain III amad1_04590 PF05190 MutS family domain IV amad1_04595 PF02464 Competence-damaged protein amad1_04600 PF00154 recA bacterial DNA recombination protein amad1_04605 PF00005 ABC transporter amad1_04610 PF12679 ABC-2 family transporter protein amad1_04625 PF00005 ABC transporter amad1_04630 PF03379 CcmB protein amad1_04635 PF01578 Cytochrome C assembly protein amad1_04640 PF04995 Heme exporter protein D (CcmD) amad1_04645 PF03100 CcmE amad1_04650 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal amad1_04650 PF01578 Cytochrome C assembly protein amad1_04655 PF08534 Redoxin amad1_04660 PF03918 Cytochrome C biogenesis protein amad1_04670 PF04333 MlaA lipoprotein amad1_04675 PF16363 GDP-mannose 4,6 dehydratase amad1_04685 PF00854 POT family amad1_04695 PF00005 ABC transporter amad1_04715 PF00953 Glycosyl transferase family 4 amad1_04730 PF00483 Nucleotidyl transferase amad1_04735 PF10531 SLBB domain amad1_04740 PF00180 Isocitrate/isopropylmalate dehydrogenase amad1_04740 PF18324 Hypothetical protein TT1725 amad1_04755 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases amad1_04755 PF03641 Possible lysine decarboxylase amad1_04755 PF11892 Domain of unknown function (DUF3412) amad1_04760 PF00072 Response regulator receiver domain amad1_04760 PF00990 Diguanylate cyclase, GGDEF domain amad1_04765 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term amad1_04765 PF14489 QueF-like protein amad1_04770 PF07348 Syd protein (SUKH-2) amad1_04805 PF00849 RNA pseudouridylate synthase amad1_04810 PF00258 Flavodoxin amad1_04815 PF00132 Bacterial transferase hexapeptide (six repeats) amad1_04815 PF14602 Hexapeptide repeat of succinyl-transferase amad1_04815 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal amad1_04820 PF01966 HD domain amad1_04820 PF08335 GlnD PII-uridylyltransferase amad1_04820 PF01909 Nucleotidyltransferase domain amad1_04825 PF00557 Metallopeptidase family M24 amad1_04830 PF00318 Ribosomal protein S2 amad1_04835 PF00889 Elongation factor TS amad1_04840 PF00696 Amino acid kinase family amad1_04845 PF01765 Ribosome recycling factor amad1_04850 PF01255 Putative undecaprenyl diphosphate synthase amad1_04860 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain amad1_04860 PF13288 DXP reductoisomerase C-terminal domain amad1_04860 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase amad1_04865 PF02163 Peptidase family M50 amad1_04865 PF17820 PDZ domain amad1_04870 PF01103 Surface antigen amad1_04870 PF07244 Surface antigen variable number repeat amad1_04875 PF03938 Outer membrane protein (OmpH-like) amad1_04880 PF07977 FabA-like domain amad1_04885 PF00132 Bacterial transferase hexapeptide (six repeats) amad1_04885 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 amad1_04890 PF02684 Lipid-A-disaccharide synthetase amad1_04895 PF01351 Ribonuclease HII amad1_04900 PF07733 Bacterial DNA polymerase III alpha NTPase domain amad1_04900 PF01336 OB-fold nucleic acid binding domain amad1_04900 PF02811 PHP domain amad1_04900 PF14579 Helix-hairpin-helix motif amad1_04900 PF17657 Bacterial DNA polymerase III alpha subunit finger domain amad1_04905 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit amad1_04910 PF01171 PP-loop family amad1_04910 PF11734 TilS substrate C-terminal domain amad1_04910 PF09179 TilS substrate binding domain amad1_04915 PF03707 Bacterial signalling protein N terminal repeat amad1_04915 PF00990 Diguanylate cyclase, GGDEF domain amad1_04915 PF00563 EAL domain amad1_04920 PF00999 Sodium/hydrogen exchanger family amad1_04920 PF02080 TrkA-C domain amad1_04920 PF02254 TrkA-N domain amad1_04930 PF14437 MafB19-like deaminase amad1_04940 PF01464 Transglycosylase SLT domain amad1_04940 PF00497 Bacterial extracellular solute-binding proteins, family 3 amad1_04945 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal amad1_04945 PF02769 AIR synthase related protein, C-terminal domain amad1_04945 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain amad1_04955 PF01713 Smr domain amad1_04990 PF00529 HlyD membrane-fusion protein of T1SS amad1_04990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion amad1_04995 PF00196 Bacterial regulatory proteins, luxR family amad1_04995 PF00072 Response regulator receiver domain amad1_05035 PF01584 CheW-like domain amad1_05035 PF00072 Response regulator receiver domain amad1_05040 PF01739 CheR methyltransferase, SAM binding domain amad1_05040 PF03705 CheR methyltransferase, all-alpha domain amad1_05045 PF00460 Flagella basal body rod protein amad1_05050 PF00460 Flagella basal body rod protein amad1_05050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal amad1_05055 PF03963 Flagellar hook capping protein - N-terminal region amad1_05055 PF13861 FlgD Tudor-like domain amad1_05055 PF13860 FlgD Ig-like domain amad1_05060 PF06429 Flagellar basal body rod FlgEFG protein C-terminal amad1_05060 PF00460 Flagella basal body rod protein amad1_05060 PF07559 Flagellar basal body protein FlaE amad1_05065 PF00460 Flagella basal body rod protein amad1_05065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal amad1_05070 PF00460 Flagella basal body rod protein amad1_05070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal amad1_05075 PF02107 Flagellar L-ring protein amad1_05080 PF02119 Flagellar P-ring protein amad1_05085 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase amad1_05085 PF10135 Rod binding protein amad1_05105 PF07196 Flagellin hook IN motif amad1_05105 PF00700 Bacterial flagellin C-terminal helical region amad1_05105 PF00669 Bacterial flagellin N-terminal helical region amad1_05110 PF00669 Bacterial flagellin N-terminal helical region amad1_05110 PF07196 Flagellin hook IN motif amad1_05110 PF00700 Bacterial flagellin C-terminal helical region amad1_05115 PF00700 Bacterial flagellin C-terminal helical region amad1_05115 PF07196 Flagellin hook IN motif amad1_05115 PF00669 Bacterial flagellin N-terminal helical region amad1_05120 PF00700 Bacterial flagellin C-terminal helical region amad1_05120 PF00669 Bacterial flagellin N-terminal helical region amad1_05120 PF07196 Flagellin hook IN motif amad1_05125 PF03646 FlaG protein amad1_05130 PF02465 Flagellar hook-associated protein 2 N-terminus amad1_05130 PF07196 Flagellin hook IN motif amad1_05130 PF07195 Flagellar hook-associated protein 2 C-terminus amad1_05135 PF02561 Flagellar protein FliS amad1_05150 PF02719 Polysaccharide biosynthesis protein amad1_05155 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family amad1_05165 PF03102 NeuB family amad1_05165 PF08666 SAF domain amad1_05185 PF13193 AMP-binding enzyme C-terminal domain amad1_05185 PF00501 AMP-binding enzyme amad1_05220 PF00535 Glycosyl transferase family 2 amad1_05230 PF03668 P-loop ATPase protein family amad1_05235 PF00535 Glycosyl transferase family 2 amad1_05240 PF03275 UDP-galactopyranose mutase amad1_05245 PF00535 Glycosyl transferase family 2 amad1_05250 PF02348 Cytidylyltransferase amad1_05255 PF00669 Bacterial flagellin N-terminal helical region amad1_05255 PF00700 Bacterial flagellin C-terminal helical region amad1_05260 PF02954 Bacterial regulatory protein, Fis family amad1_05260 PF00158 Sigma-54 interaction domain amad1_05260 PF00072 Response regulator receiver domain amad1_05265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_05265 PF00512 His Kinase A (phospho-acceptor) domain amad1_05265 PF00989 PAS fold amad1_05270 PF00158 Sigma-54 interaction domain amad1_05270 PF02954 Bacterial regulatory protein, Fis family amad1_05275 PF02049 Flagellar hook-basal body complex protein FliE amad1_05280 PF01514 Secretory protein of YscJ/FliF family amad1_05280 PF08345 Flagellar M-ring protein C-terminal amad1_05285 PF14841 FliG middle domain amad1_05285 PF01706 FliG C-terminal domain amad1_05285 PF14842 FliG N-terminal domain amad1_05295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain amad1_05295 PF18269 T3SS EscN ATPase C-terminal domain amad1_05315 PF02154 Flagellar motor switch protein FliM amad1_05315 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term amad1_05320 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term amad1_05325 PF04347 Flagellar biosynthesis protein, FliO amad1_05330 PF00813 FliP family amad1_05335 PF01313 Bacterial export proteins, family 3 amad1_05340 PF01311 Bacterial export proteins, family 1 amad1_05345 PF01312 FlhB HrpN YscU SpaS Family amad1_05350 PF00771 FHIPEP family amad1_05355 PF00448 SRP54-type protein, GTPase domain amad1_05360 PF10609 NUBPL iron-transfer P-loop NTPase amad1_05365 PF04542 Sigma-70 region 2 amad1_05365 PF04545 Sigma-70, region 4 amad1_05365 PF04539 Sigma-70 region 3 amad1_05370 PF00072 Response regulator receiver domain amad1_05375 PF04344 Chemotaxis phosphatase, CheZ amad1_05380 PF01584 CheW-like domain amad1_05380 PF02895 Signal transducing histidine kinase, homodimeric domain amad1_05380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_05380 PF01627 Hpt domain amad1_05380 PF07194 P2 response regulator binding domain amad1_05385 PF00072 Response regulator receiver domain amad1_05385 PF01339 CheB methylesterase amad1_05390 PF13614 AAA domain amad1_05400 PF01584 CheW-like domain amad1_05410 PF04204 Homoserine O-succinyltransferase amad1_05415 PF02574 Homocysteine S-methyltransferase amad1_05415 PF02310 B12 binding domain amad1_05415 PF02607 B12 binding domain amad1_05415 PF00809 Pterin binding enzyme amad1_05415 PF02965 Vitamin B12 dependent methionine synthase, activation domain amad1_05420 PF02310 B12 binding domain amad1_05420 PF02607 B12 binding domain amad1_05420 PF02965 Vitamin B12 dependent methionine synthase, activation domain amad1_05420 PF00809 Pterin binding enzyme amad1_05420 PF02574 Homocysteine S-methyltransferase amad1_05430 PF06865 Pyrimidine/purine nucleoside phosphorylase amad1_05435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_05435 PF03466 LysR substrate binding domain amad1_05440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_05440 PF03466 LysR substrate binding domain amad1_05445 PF00484 Carbonic anhydrase amad1_05450 PF00916 Sulfate permease family amad1_05450 PF01740 STAS domain amad1_05460 PF00440 Bacterial regulatory proteins, tetR family amad1_05460 PF13977 BetI-type transcriptional repressor, C-terminal amad1_05465 PF01431 Peptidase family M13 amad1_05465 PF05649 Peptidase family M13 amad1_05475 PF02631 RecX family amad1_05480 PF01411 tRNA synthetases class II (A) amad1_05480 PF02272 DHHA1 domain amad1_05480 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain amad1_05485 PF02599 Global regulator protein family amad1_05495 PF00364 Biotin-requiring enzyme amad1_05495 PF00682 HMGL-like amad1_05495 PF02436 Conserved carboxylase domain amad1_05500 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit amad1_05505 PF00005 ABC transporter amad1_05510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region amad1_05510 PF00005 ABC transporter amad1_05515 PF00528 Binding-protein-dependent transport system inner membrane component amad1_05515 PF12911 N-terminal TM domain of oligopeptide transport permease C amad1_05520 PF00528 Binding-protein-dependent transport system inner membrane component amad1_05525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle amad1_05530 PF02954 Bacterial regulatory protein, Fis family amad1_05530 PF00158 Sigma-54 interaction domain amad1_05535 PF04012 PspA/IM30 family amad1_05550 PF00351 Biopterin-dependent aromatic amino acid hydroxylase amad1_05555 PF18024 Helix-turn-helix domain amad1_05555 PF00158 Sigma-54 interaction domain amad1_05565 PF14497 Glutathione S-transferase, C-terminal domain amad1_05565 PF02798 Glutathione S-transferase, N-terminal domain amad1_05570 PF01037 Lrp/AsnC ligand binding domain amad1_05575 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase amad1_05575 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain amad1_05590 PF03301 Tryptophan 2,3-dioxygenase amad1_05605 PF07715 TonB-dependent Receptor Plug Domain amad1_05605 PF00593 TonB dependent receptor amad1_05640 PF01618 MotA/TolQ/ExbB proton channel family amad1_05645 PF01618 MotA/TolQ/ExbB proton channel family amad1_05650 PF02472 Biopolymer transport protein ExbD/TolR amad1_05655 PF03544 Gram-negative bacterial TonB protein C-terminal amad1_05665 PF17176 tRNA-binding domain amad1_05665 PF05127 Helicase amad1_05665 PF13718 GNAT acetyltransferase 2 amad1_05665 PF08351 Domain of unknown function (DUF1726) amad1_05690 PF01636 Phosphotransferase enzyme family amad1_05700 PF00583 Acetyltransferase (GNAT) family amad1_05715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_05715 PF03466 LysR substrate binding domain amad1_05720 PF07690 Major Facilitator Superfamily amad1_05725 PF00296 Luciferase-like monooxygenase amad1_05730 PF00248 Aldo/keto reductase family amad1_05745 PF13533 Biotin-lipoyl like amad1_05750 PF01047 MarR family amad1_05760 PF01381 Helix-turn-helix amad1_05765 PF13657 HipA N-terminal domain amad1_05765 PF07804 HipA-like C-terminal domain amad1_05790 PF01699 Sodium/calcium exchanger protein amad1_05795 PF00924 Mechanosensitive ion channel amad1_05795 PF05552 Conserved TM helix amad1_05800 PF00817 impB/mucB/samB family amad1_05800 PF11799 impB/mucB/samB family C-terminal domain amad1_05800 PF13438 Domain of unknown function (DUF4113) amad1_05805 PF00717 Peptidase S24-like amad1_05810 PF00929 Exonuclease amad1_05810 PF02811 PHP domain amad1_05810 PF17657 Bacterial DNA polymerase III alpha subunit finger domain amad1_05810 PF11490 DNA polymerase III polC-type N-terminus II amad1_05810 PF07733 Bacterial DNA polymerase III alpha NTPase domain amad1_05810 PF14579 Helix-hairpin-helix motif amad1_05825 PF02384 N-6 DNA Methylase amad1_05830 PF01420 Type I restriction modification DNA specificity domain amad1_05940 PF00403 Heavy-metal-associated domain amad1_05945 PF09278 MerR, DNA binding amad1_05945 PF00376 MerR family regulatory protein amad1_05965 PF09278 MerR, DNA binding amad1_05965 PF00376 MerR family regulatory protein amad1_05970 PF01022 Bacterial regulatory protein, arsR family amad1_05975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain amad1_05975 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_05980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain amad1_05980 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_05980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain amad1_05980 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_05985 PF01545 Cation efflux family amad1_05995 PF00403 Heavy-metal-associated domain amad1_06015 PF00873 AcrB/AcrD/AcrF family amad1_06020 PF02321 Outer membrane efflux protein amad1_06035 PF00873 AcrB/AcrD/AcrF family amad1_06055 PF10411 Disulfide bond isomerase protein N-terminus amad1_06055 PF13098 Thioredoxin-like domain amad1_06070 PF10502 Signal peptidase, peptidase S26 amad1_06080 PF06834 TraU protein amad1_06085 PF06986 Type-1V conjugative transfer system mating pair stabilisation amad1_06090 PF13361 UvrD-like helicase C-terminal domain amad1_06090 PF00580 UvrD/REP helicase N-terminal domain amad1_06100 PF00082 Subtilase family amad1_06105 PF00004 ATPase family associated with various cellular activities (AAA) amad1_06125 PF00436 Single-strand binding protein family amad1_06145 PF07728 AAA domain (dynein-related subfamily) amad1_06145 PF08406 CbbQ/NirQ/NorQ C-terminal amad1_06165 PF00092 von Willebrand factor type A domain amad1_06170 PF04002 RadC-like JAB domain amad1_06190 PF03466 LysR substrate binding domain amad1_06190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_06205 PF06122 Conjugative relaxosome accessory transposon protein amad1_06250 PF01381 Helix-turn-helix amad1_06250 PF00717 Peptidase S24-like amad1_06255 PF03144 Elongation factor Tu domain 2 amad1_06255 PF00009 Elongation factor Tu GTP binding domain amad1_06255 PF16658 Class II release factor RF3, C-terminal domain amad1_06260 PF03485 Arginyl tRNA synthetase N terminal domain amad1_06260 PF05746 DALR anticodon binding domain amad1_06260 PF00750 tRNA synthetases class I (R) amad1_06280 PF00291 Pyridoxal-phosphate dependent enzyme amad1_06290 PF00990 Diguanylate cyclase, GGDEF domain amad1_06290 PF17158 Membrane-associated sensor, integral membrane domain amad1_06295 PF04224 Protein of unknown function, DUF417 amad1_06310 PF00487 Fatty acid desaturase amad1_06315 PF00970 Oxidoreductase FAD-binding domain amad1_06315 PF00042 Globin amad1_06315 PF00175 Oxidoreductase NAD-binding domain amad1_06325 PF03462 PCRF domain amad1_06325 PF00472 RF-1 domain amad1_06330 PF00152 tRNA synthetases class II (D, K and N) amad1_06330 PF01336 OB-fold nucleic acid binding domain amad1_06335 PF02558 Ketopantoate reductase PanE/ApbA amad1_06335 PF08546 Ketopantoate reductase PanE/ApbA C terminal amad1_06340 PF00849 RNA pseudouridylate synthase amad1_06350 PF00675 Insulinase (Peptidase family M16) amad1_06350 PF05193 Peptidase M16 inactive domain amad1_06355 PF04262 Glutamate-cysteine ligase amad1_06380 PF01713 Smr domain amad1_06385 PF05175 Methyltransferase small domain amad1_06390 PF01264 Chorismate synthase amad1_06400 PF04293 SpoVR like protein amad1_06405 PF04285 Protein of unknown function (DUF444) amad1_06410 PF08298 PrkA AAA domain amad1_06410 PF06798 PrkA serine protein kinase C-terminal domain amad1_06420 PF00462 Glutaredoxin amad1_06425 PF00593 TonB dependent receptor amad1_06425 PF07715 TonB-dependent Receptor Plug Domain amad1_06440 PF00593 TonB dependent receptor amad1_06440 PF07715 TonB-dependent Receptor Plug Domain amad1_06445 PF04324 BFD-like [2Fe-2S] binding domain amad1_06450 PF10417 C-terminal domain of 1-Cys peroxiredoxin amad1_06450 PF00578 AhpC/TSA family amad1_06455 PF00929 Exonuclease amad1_06460 PF00691 OmpA family amad1_06460 PF18393 MotY N-terminal domain amad1_06465 PF03009 Glycerophosphoryl diester phosphodiesterase family amad1_06470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily amad1_06475 PF00313 'Cold-shock' DNA-binding domain amad1_06485 PF02225 PA domain amad1_06485 PF04389 Peptidase family M28 amad1_06490 PF00633 Helix-hairpin-helix motif amad1_06490 PF00730 HhH-GPD superfamily base excision DNA repair protein amad1_06495 PF02508 Rnf-Nqr subunit, membrane protein amad1_06500 PF04205 FMN-binding domain amad1_06505 PF03116 NQR2, RnfD, RnfE family amad1_06520 PF04060 Putative Fe-S cluster amad1_06530 PF01554 MatE amad1_06535 PF00271 Helicase conserved C-terminal domain amad1_06535 PF04851 Type III restriction enzyme, res subunit amad1_06535 PF02151 UvrB/uvrC motif amad1_06535 PF12344 Ultra-violet resistance protein B amad1_06535 PF17757 UvrB interaction domain amad1_06545 PF06508 Queuosine biosynthesis protein QueC amad1_06550 PF04055 Radical SAM superfamily amad1_06560 PF00733 Asparagine synthase amad1_06560 PF13537 Glutamine amidotransferase domain amad1_06585 PF03600 Citrate transporter amad1_06585 PF02080 TrkA-C domain amad1_06590 PF00009 Elongation factor Tu GTP binding domain amad1_06595 PF00459 Inositol monophosphatase family amad1_06605 PF01507 Phosphoadenosine phosphosulfate reductase family amad1_06610 PF00474 Sodium:solute symporter family amad1_06615 PF17158 Membrane-associated sensor, integral membrane domain amad1_06615 PF00990 Diguanylate cyclase, GGDEF domain amad1_06625 PF08281 Sigma-70, region 4 amad1_06625 PF04542 Sigma-70 region 2 amad1_06640 PF13519 von Willebrand factor type A domain amad1_06640 PF07584 Aerotolerance regulator N-terminal amad1_06645 PF00092 von Willebrand factor type A domain amad1_06655 PF01882 Protein of unknown function DUF58 amad1_06660 PF07726 ATPase family associated with various cellular activities (AAA) amad1_06660 PF17863 AAA lid domain amad1_06665 PF02803 Thiolase, C-terminal domain amad1_06665 PF00108 Thiolase, N-terminal domain amad1_06670 PF00378 Enoyl-CoA hydratase/isomerase amad1_06670 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain amad1_06670 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain amad1_06685 PF00563 EAL domain amad1_06685 PF03707 Bacterial signalling protein N terminal repeat amad1_06685 PF00990 Diguanylate cyclase, GGDEF domain amad1_06690 PF05193 Peptidase M16 inactive domain amad1_06690 PF00675 Insulinase (Peptidase family M16) amad1_06695 PF00300 Histidine phosphatase superfamily (branch 1) amad1_06705 PF01595 Cyclin M transmembrane N-terminal domain amad1_06705 PF00571 CBS domain amad1_06705 PF03471 Transporter associated domain amad1_06710 PF01578 Cytochrome C assembly protein amad1_06715 PF02978 Signal peptide binding domain amad1_06715 PF02881 SRP54-type protein, helical bundle domain amad1_06715 PF00448 SRP54-type protein, GTPase domain amad1_06755 PF00873 AcrB/AcrD/AcrF family amad1_06760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion amad1_06765 PF00664 ABC transporter transmembrane region amad1_06765 PF00005 ABC transporter amad1_06780 PF00886 Ribosomal protein S16 amad1_06785 PF01782 RimM N-terminal domain amad1_06785 PF05239 PRC-barrel domain amad1_06790 PF01746 tRNA (Guanine-1)-methyltransferase amad1_06795 PF01245 Ribosomal protein L19 amad1_06800 PF03458 UPF0126 domain amad1_06805 PF00378 Enoyl-CoA hydratase/isomerase amad1_06810 PF00793 DAHP synthetase I family amad1_06815 PF02153 Prephenate dehydrogenase amad1_06815 PF01817 Chorismate mutase type II amad1_06820 PF01817 Chorismate mutase type II amad1_06820 PF00800 Prephenate dehydratase amad1_06825 PF00072 Response regulator receiver domain amad1_06830 PF01253 Translation initiation factor SUI1 amad1_06840 PF00486 Transcriptional regulatory protein, C terminal amad1_06840 PF00072 Response regulator receiver domain amad1_06850 PF00563 EAL domain amad1_06850 PF00990 Diguanylate cyclase, GGDEF domain amad1_06850 PF03707 Bacterial signalling protein N terminal repeat amad1_06860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_06860 PF00512 His Kinase A (phospho-acceptor) domain amad1_06870 PF00158 Sigma-54 interaction domain amad1_06870 PF00072 Response regulator receiver domain amad1_06875 PF00700 Bacterial flagellin C-terminal helical region amad1_06875 PF07196 Flagellin hook IN motif amad1_06875 PF00669 Bacterial flagellin N-terminal helical region amad1_06895 PF00152 tRNA synthetases class II (D, K and N) amad1_06895 PF01336 OB-fold nucleic acid binding domain amad1_06895 PF02938 GAD domain amad1_06900 PF00293 NUDIX domain amad1_06905 PF02075 Crossover junction endodeoxyribonuclease RuvC amad1_06915 PF05491 RuvB C-terminal winged helix domain amad1_06915 PF17864 RuvB AAA lid domain amad1_06915 PF05496 Holliday junction DNA helicase RuvB P-loop domain amad1_06920 PF03061 Thioesterase superfamily amad1_06925 PF01618 MotA/TolQ/ExbB proton channel family amad1_06930 PF02472 Biopolymer transport protein ExbD/TolR amad1_06940 PF07676 WD40-like Beta Propeller Repeat amad1_06940 PF04052 TolB amino-terminal domain amad1_06945 PF00691 OmpA family amad1_06950 PF13174 Tetratricopeptide repeat amad1_06950 PF16331 TolA binding protein trimerisation amad1_06960 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) amad1_06965 PF02445 Quinolinate synthetase A protein amad1_06980 PF02796 Helix-turn-helix domain of resolvase amad1_06980 PF00239 Resolvase, N terminal domain amad1_06995 PF01734 Patatin-like phospholipase amad1_07000 PF02558 Ketopantoate reductase PanE/ApbA amad1_07000 PF08546 Ketopantoate reductase PanE/ApbA C terminal amad1_07010 PF00072 Response regulator receiver domain amad1_07010 PF09308 LuxQ, periplasmic amad1_07010 PF00512 His Kinase A (phospho-acceptor) domain amad1_07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_07020 PF02774 Semialdehyde dehydrogenase, dimerisation domain amad1_07020 PF01118 Semialdehyde dehydrogenase, NAD binding domain amad1_07030 PF01292 Prokaryotic cytochrome b561 amad1_07035 PF00563 EAL domain amad1_07035 PF00990 Diguanylate cyclase, GGDEF domain amad1_07035 PF03707 Bacterial signalling protein N terminal repeat amad1_07050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_07050 PF03466 LysR substrate binding domain amad1_07055 PF01863 Protein of unknown function DUF45 amad1_07065 PF00873 AcrB/AcrD/AcrF family amad1_07075 PF00440 Bacterial regulatory proteins, tetR family amad1_07075 PF08361 MAATS-type transcriptional repressor, C-terminal region amad1_07080 PF07715 TonB-dependent Receptor Plug Domain amad1_07080 PF00593 TonB dependent receptor amad1_07090 PF00873 AcrB/AcrD/AcrF family amad1_07100 PF00990 Diguanylate cyclase, GGDEF domain amad1_07110 PF02470 MlaD protein amad1_07115 PF04403 Paraquat-inducible protein A amad1_07130 PF01336 OB-fold nucleic acid binding domain amad1_07130 PF00152 tRNA synthetases class II (D, K and N) amad1_07140 PF01699 Sodium/calcium exchanger protein amad1_07145 PF08443 RimK-like ATP-grasp domain amad1_07145 PF18030 RimK PreATP-grasp domain amad1_07165 PF00202 Aminotransferase class-III amad1_07170 PF04055 Radical SAM superfamily amad1_07170 PF06968 Biotin and Thiamin Synthesis associated domain amad1_07175 PF00155 Aminotransferase class I and II amad1_07190 PF03575 Peptidase family S51 amad1_07195 PF01451 Low molecular weight phosphotyrosine protein phosphatase amad1_07200 PF01032 FecCD transport family amad1_07205 PF00005 ABC transporter amad1_07210 PF01474 Class-II DAHP synthetase family amad1_07225 PF00664 ABC transporter transmembrane region amad1_07225 PF00005 ABC transporter amad1_07230 PF06463 Molybdenum Cofactor Synthesis C amad1_07230 PF04055 Radical SAM superfamily amad1_07240 PF00486 Transcriptional regulatory protein, C terminal amad1_07240 PF00072 Response regulator receiver domain amad1_07245 PF00749 tRNA synthetases class I (E and Q), catalytic domain amad1_07265 PF01207 Dihydrouridine synthase (Dus) amad1_07280 PF13472 GDSL-like Lipase/Acylhydrolase family amad1_07285 PF00005 ABC transporter amad1_07295 PF08338 Domain of unknown function (DUF1731) amad1_07295 PF01370 NAD dependent epimerase/dehydratase family amad1_07300 PF02152 Dihydroneopterin aldolase amad1_07305 PF01594 AI-2E family transporter amad1_07310 PF08918 PhoQ Sensor amad1_07310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_07315 PF00486 Transcriptional regulatory protein, C terminal amad1_07315 PF00072 Response regulator receiver domain amad1_07330 PF03795 YCII-related domain amad1_07335 PF00290 Tryptophan synthase alpha chain amad1_07340 PF00291 Pyridoxal-phosphate dependent enzyme amad1_07345 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase amad1_07345 PF00218 Indole-3-glycerol phosphate synthase amad1_07350 PF00591 Glycosyl transferase family, a/b domain amad1_07350 PF02885 Glycosyl transferase family, helical bundle domain amad1_07355 PF00117 Glutamine amidotransferase class-I amad1_07360 PF04715 Anthranilate synthase component I, N terminal region amad1_07360 PF00425 chorismate binding enzyme amad1_07365 PF02811 PHP domain amad1_07370 PF01300 Telomere recombination amad1_07375 PF02616 Segregation and condensation protein ScpA amad1_07380 PF04079 Segregation and condensation complex subunit ScpB amad1_07385 PF00849 RNA pseudouridylate synthase amad1_07385 PF01479 S4 domain amad1_07390 PF00248 Aldo/keto reductase family amad1_07395 PF12464 Maltose acetyltransferase amad1_07395 PF14602 Hexapeptide repeat of succinyl-transferase amad1_07405 PF04286 Protein of unknown function (DUF445) amad1_07420 PF00005 ABC transporter amad1_07420 PF00664 ABC transporter transmembrane region amad1_07425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion amad1_07425 PF00529 HlyD membrane-fusion protein of T1SS amad1_07430 PF05724 Thiopurine S-methyltransferase (TPMT) amad1_07435 PF04355 SmpA / OmlA family amad1_07440 PF02463 RecF/RecN/SMC N terminal domain amad1_07445 PF00210 Ferritin-like domain amad1_07455 PF00465 Iron-containing alcohol dehydrogenase amad1_07470 PF00561 alpha/beta hydrolase fold amad1_07480 PF07715 TonB-dependent Receptor Plug Domain amad1_07480 PF00593 TonB dependent receptor amad1_07485 PF00196 Bacterial regulatory proteins, luxR family amad1_07485 PF00072 Response regulator receiver domain amad1_07490 PF00672 HAMP domain amad1_07490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_07490 PF00512 His Kinase A (phospho-acceptor) domain amad1_07490 PF00072 Response regulator receiver domain amad1_07490 PF01627 Hpt domain amad1_07495 PF01025 GrpE amad1_07500 PF00012 Hsp70 protein amad1_07505 PF00684 DnaJ central domain amad1_07505 PF01556 DnaJ C terminal domain amad1_07505 PF00226 DnaJ domain amad1_07510 PF01322 Cytochrome C' amad1_07515 PF12792 CSS motif domain associated with EAL amad1_07515 PF00563 EAL domain amad1_07520 PF13193 AMP-binding enzyme C-terminal domain amad1_07520 PF00501 AMP-binding enzyme amad1_07520 PF16177 Acetyl-coenzyme A synthetase N-terminus amad1_07530 PF01113 Dihydrodipicolinate reductase, N-terminus amad1_07530 PF05173 Dihydrodipicolinate reductase, C-terminus amad1_07535 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain amad1_07535 PF00117 Glutamine amidotransferase class-I amad1_07540 PF02142 MGS-like domain amad1_07540 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain amad1_07540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain amad1_07545 PF03449 Transcription elongation factor, N-terminal amad1_07545 PF01272 Transcription elongation factor, GreA/GreB, C-term amad1_07560 PF00011 Hsp20/alpha crystallin family amad1_07565 PF00871 Acetokinase family amad1_07570 PF01515 Phosphate acetyl/butaryl transferase amad1_07570 PF07085 DRTGG domain amad1_07585 PF00795 Carbon-nitrogen hydrolase amad1_07590 PF00571 CBS domain amad1_07590 PF03471 Transporter associated domain amad1_07595 PF02130 Uncharacterized protein family UPF0054 amad1_07600 PF02562 PhoH-like protein amad1_07605 PF04055 Radical SAM superfamily amad1_07605 PF01938 TRAM domain amad1_07605 PF00919 Uncharacterized protein family UPF0004 amad1_07610 PF01494 FAD binding domain amad1_07650 PF07715 TonB-dependent Receptor Plug Domain amad1_07650 PF00593 TonB dependent receptor amad1_07655 PF03061 Thioesterase superfamily amad1_07660 PF01613 Flavin reductase like domain amad1_07670 PF01235 Sodium:alanine symporter family amad1_07675 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD amad1_07680 PF01926 50S ribosome-binding GTPase amad1_07680 PF06071 Protein of unknown function (DUF933) amad1_07685 PF01195 Peptidyl-tRNA hydrolase amad1_07695 PF01386 Ribosomal L25p family amad1_07695 PF14693 Ribosomal protein TL5, C-terminal domain amad1_07700 PF00107 Zinc-binding dehydrogenase amad1_07700 PF08240 Alcohol dehydrogenase GroES-like domain amad1_07715 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase amad1_07715 PF14572 Phosphoribosyl synthetase-associated domain amad1_07720 PF00288 GHMP kinases N terminal domain amad1_07720 PF08544 GHMP kinases C terminal amad1_07725 PF03550 Outer membrane lipoprotein LolB amad1_07730 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain amad1_07730 PF01488 Shikimate / quinate 5-dehydrogenase amad1_07730 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain amad1_07735 PF03462 PCRF domain amad1_07735 PF00472 RF-1 domain amad1_07740 PF13847 Methyltransferase domain amad1_07740 PF17827 PrmC N-terminal domain amad1_07745 PF11849 Domain of unknown function (DUF3369) amad1_07750 PF04247 Invasion gene expression up-regulator, SirB amad1_07765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_07765 PF03466 LysR substrate binding domain amad1_07775 PF04241 Protein of unknown function (DUF423) amad1_07780 PF01728 FtsJ-like methyltransferase amad1_07780 PF18125 RlmM ferredoxin-like domain amad1_07785 PF03144 Elongation factor Tu domain 2 amad1_07785 PF03764 Elongation factor G, domain IV amad1_07785 PF14492 Elongation Factor G, domain II amad1_07785 PF00679 Elongation factor G C-terminus amad1_07785 PF00009 Elongation factor Tu GTP binding domain amad1_07790 PF02560 Cyanate lyase C-terminal domain amad1_07795 PF02560 Cyanate lyase C-terminal domain amad1_07800 PF00069 Protein kinase domain amad1_07805 PF01226 Formate/nitrite transporter amad1_07810 PF11992 Domain of unknown function (DUF3488) amad1_07810 PF13559 Domain of unknown function (DUF4129) amad1_07810 PF01841 Transglutaminase-like superfamily amad1_07820 PF07726 ATPase family associated with various cellular activities (AAA) amad1_07820 PF17863 AAA lid domain amad1_07825 PF03925 SeqA protein C-terminal domain amad1_07825 PF17206 SeqA protein N-terminal domain amad1_07830 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain amad1_07830 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III amad1_07830 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II amad1_07830 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I amad1_07835 PF00343 Carbohydrate phosphorylase amad1_07840 PF03707 Bacterial signalling protein N terminal repeat amad1_07840 PF00563 EAL domain amad1_07840 PF00990 Diguanylate cyclase, GGDEF domain amad1_07845 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family amad1_07855 PF01906 Putative heavy-metal-binding amad1_07860 PF00375 Sodium:dicarboxylate symporter family amad1_07875 PF01546 Peptidase family M20/M25/M40 amad1_07875 PF07687 Peptidase dimerisation domain amad1_07880 PF03960 ArsC family amad1_07885 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 amad1_07900 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily amad1_07905 PF04209 homogentisate 1,2-dioxygenase amad1_07925 PF00091 Tubulin/FtsZ family, GTPase domain amad1_07925 PF12327 FtsZ family, C-terminal domain amad1_07935 PF03707 Bacterial signalling protein N terminal repeat amad1_07935 PF00990 Diguanylate cyclase, GGDEF domain amad1_07935 PF00563 EAL domain amad1_07940 PF00563 EAL domain amad1_07940 PF00990 Diguanylate cyclase, GGDEF domain amad1_07940 PF03707 Bacterial signalling protein N terminal repeat amad1_07945 PF00873 AcrB/AcrD/AcrF family amad1_07955 PF02254 TrkA-N domain amad1_07955 PF00999 Sodium/hydrogen exchanger family amad1_07960 PF02525 Flavodoxin-like fold amad1_07970 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase amad1_07975 PF01799 [2Fe-2S] binding domain amad1_07975 PF00111 2Fe-2S iron-sulfur cluster binding domain amad1_07980 PF01638 HxlR-like helix-turn-helix amad1_07985 PF00990 Diguanylate cyclase, GGDEF domain amad1_07985 PF05231 MASE1 amad1_07985 PF08447 PAS fold amad1_07985 PF08448 PAS fold amad1_07985 PF13426 PAS domain amad1_07985 PF00563 EAL domain amad1_07995 PF01979 Amidohydrolase family amad1_08000 PF00576 HIUase/Transthyretin family amad1_08015 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain amad1_08015 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase amad1_08020 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain amad1_08020 PF01799 [2Fe-2S] binding domain amad1_08020 PF00111 2Fe-2S iron-sulfur cluster binding domain amad1_08020 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase amad1_08030 PF00440 Bacterial regulatory proteins, tetR family amad1_08030 PF08362 YcdC-like protein, C-terminal region amad1_08045 PF00860 Permease family amad1_08050 PF00962 Adenosine/AMP deaminase amad1_08060 PF00072 Response regulator receiver domain amad1_08065 PF01590 GAF domain amad1_08065 PF00990 Diguanylate cyclase, GGDEF domain amad1_08065 PF00563 EAL domain amad1_08065 PF00360 Phytochrome region amad1_08070 PF01590 GAF domain amad1_08070 PF00990 Diguanylate cyclase, GGDEF domain amad1_08070 PF00360 Phytochrome region amad1_08070 PF00563 EAL domain amad1_08075 PF09308 LuxQ, periplasmic amad1_08075 PF00072 Response regulator receiver domain amad1_08075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_08075 PF00512 His Kinase A (phospho-acceptor) domain amad1_08085 PF07715 TonB-dependent Receptor Plug Domain amad1_08085 PF00593 TonB dependent receptor amad1_08090 PF00860 Permease family amad1_08100 PF01546 Peptidase family M20/M25/M40 amad1_08100 PF07687 Peptidase dimerisation domain amad1_08105 PF00266 Aminotransferase class-V amad1_08110 PF01925 Sulfite exporter TauE/SafE amad1_08120 PF01425 Amidase amad1_08165 PF03129 Anticodon binding domain amad1_08165 PF02824 TGS domain amad1_08165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) amad1_08165 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain amad1_08170 PF00707 Translation initiation factor IF-3, C-terminal domain amad1_08170 PF05198 Translation initiation factor IF-3, N-terminal domain amad1_08175 PF01632 Ribosomal protein L35 amad1_08180 PF00453 Ribosomal protein L20 amad1_08185 PF00483 Nucleotidyl transferase amad1_08185 PF01050 Mannose-6-phosphate isomerase amad1_08190 PF02397 Bacterial sugar transferase amad1_08200 PF10531 SLBB domain amad1_08200 PF02563 Polysaccharide biosynthesis/export protein amad1_08200 PF18412 Outer-membrane lipoprotein Wza C-terminal domain amad1_08205 PF13614 AAA domain amad1_08265 PF00535 Glycosyl transferase family 2 amad1_08280 PF00535 Glycosyl transferase family 2 amad1_08285 PF00534 Glycosyl transferases group 1 amad1_08285 PF13439 Glycosyltransferase Family 4 amad1_08295 PF03808 Glycosyl transferase WecB/TagA/CpsF family amad1_08310 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain amad1_08310 PF01409 tRNA synthetases class II core domain (F) amad1_08315 PF01588 Putative tRNA binding domain amad1_08315 PF03483 B3/4 domain amad1_08315 PF03147 Ferredoxin-fold anticodon binding domain amad1_08315 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain amad1_08315 PF03484 tRNA synthetase B5 domain amad1_08320 PF00216 Bacterial DNA-binding protein amad1_08330 PF04073 Aminoacyl-tRNA editing domain amad1_08335 PF01804 Penicillin amidase amad1_08340 PF00933 Glycosyl hydrolase family 3 N terminal domain amad1_08345 PF01923 Cobalamin adenosyltransferase amad1_08355 PF00271 Helicase conserved C-terminal domain amad1_08355 PF03461 TRCF domain amad1_08355 PF17757 UvrB interaction domain amad1_08355 PF00270 DEAD/DEAH box helicase amad1_08355 PF02559 CarD-like/TRCF domain amad1_08365 PF12704 MacB-like periplasmic core domain amad1_08365 PF02687 FtsX-like permease family amad1_08375 PF00072 Response regulator receiver domain amad1_08375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_08375 PF00512 His Kinase A (phospho-acceptor) domain amad1_08375 PF13188 PAS domain amad1_08375 PF08448 PAS fold amad1_08390 PF03372 Endonuclease/Exonuclease/phosphatase family amad1_08425 PF07690 Major Facilitator Superfamily amad1_08435 PF00483 Nucleotidyl transferase amad1_08460 PF00682 HMGL-like amad1_08465 PF02785 Biotin carboxylase C-terminal domain amad1_08465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain amad1_08465 PF00364 Biotin-requiring enzyme amad1_08465 PF00289 Biotin carboxylase, N-terminal domain amad1_08470 PF00378 Enoyl-CoA hydratase/isomerase amad1_08475 PF01039 Carboxyl transferase domain amad1_08480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain amad1_08480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain amad1_08480 PF02770 Acyl-CoA dehydrogenase, middle domain amad1_08485 PF13411 MerR HTH family regulatory protein amad1_08490 PF02803 Thiolase, C-terminal domain amad1_08490 PF00108 Thiolase, N-terminal domain amad1_08500 PF00266 Aminotransferase class-V amad1_08505 PF17151 Periplasmic sensor domain amad1_08505 PF00990 Diguanylate cyclase, GGDEF domain amad1_08515 PF00929 Exonuclease amad1_08515 PF08411 Exonuclease C-terminal amad1_08520 PF13356 Arm DNA-binding domain amad1_08520 PF00589 Phage integrase family amad1_08560 PF09397 Ftsk gamma domain amad1_08560 PF17854 FtsK alpha domain amad1_08560 PF13491 4TM region of DNA translocase FtsK/SpoIIIE amad1_08560 PF01580 FtsK/SpoIIIE family amad1_08605 PF00196 Bacterial regulatory proteins, luxR family amad1_08605 PF00072 Response regulator receiver domain amad1_08620 PF02498 BRO family, N-terminal domain amad1_08620 PF10548 P22AR C-terminal domain amad1_08690 PF00772 DnaB-like helicase N terminal domain amad1_08690 PF03796 DnaB-like helicase C terminal domain amad1_08780 PF03592 Terminase small subunit amad1_08780 PF10668 Phage terminase small subunit amad1_08880 PF00672 HAMP domain amad1_08880 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) amad1_08880 PF00072 Response regulator receiver domain amad1_08880 PF01627 Hpt domain amad1_08880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_08880 PF00512 His Kinase A (phospho-acceptor) domain amad1_08885 PF01112 Asparaginase amad1_08895 PF02333 Phytase amad1_08930 PF00270 DEAD/DEAH box helicase amad1_08930 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold amad1_08930 PF00271 Helicase conserved C-terminal domain amad1_08930 PF04408 Helicase associated domain (HA2) amad1_08930 PF11898 Domain of unknown function (DUF3418) amad1_08945 PF17785 PUA-like domain amad1_08945 PF10672 S-adenosylmethionine-dependent methyltransferase amad1_08950 PF00698 Acyl transferase domain amad1_08950 PF16197 Ketoacyl-synthetase C-terminal extension amad1_08950 PF08659 KR domain amad1_08950 PF00550 Phosphopantetheine attachment site amad1_08950 PF14765 Polyketide synthase dehydratase amad1_08950 PF08240 Alcohol dehydrogenase GroES-like domain amad1_08950 PF00109 Beta-ketoacyl synthase, N-terminal domain amad1_08950 PF02801 Beta-ketoacyl synthase, C-terminal domain amad1_08955 PF00075 RNase H amad1_08960 PF00929 Exonuclease amad1_08970 PF00563 EAL domain amad1_08970 PF12792 CSS motif domain associated with EAL amad1_08975 PF00005 ABC transporter amad1_08980 PF12704 MacB-like periplasmic core domain amad1_08980 PF02687 FtsX-like permease family amad1_08985 PF00375 Sodium:dicarboxylate symporter family amad1_08995 PF04996 Succinylarginine dihydrolase amad1_09025 PF12804 MobA-like NTP transferase domain amad1_09030 PF02634 FdhD/NarQ family amad1_09035 PF00384 Molybdopterin oxidoreductase amad1_09040 PF13673 Acetyltransferase (GNAT) domain amad1_09045 PF13419 Haloacid dehalogenase-like hydrolase amad1_09055 PF12111 Polyribonucleotide phosphorylase C terminal amad1_09055 PF10150 Ribonuclease E/G family amad1_09055 PF00575 S1 RNA binding domain amad1_09060 PF00849 RNA pseudouridylate synthase amad1_09060 PF01479 S4 domain amad1_09065 PF13419 Haloacid dehalogenase-like hydrolase amad1_09070 PF02545 Maf-like protein amad1_09075 PF02620 Large ribosomal RNA subunit accumulation protein YceD amad1_09080 PF01783 Ribosomal L32p protein family amad1_09085 PF02504 Fatty acid synthesis protein amad1_09090 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal amad1_09090 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III amad1_09095 PF00698 Acyl transferase domain amad1_09105 PF00550 Phosphopantetheine attachment site amad1_09110 PF02801 Beta-ketoacyl synthase, C-terminal domain amad1_09110 PF00109 Beta-ketoacyl synthase, N-terminal domain amad1_09115 PF01063 Amino-transferase class IV amad1_09120 PF02618 YceG-like family amad1_09125 PF02223 Thymidylate kinase amad1_09130 PF09115 DNA polymerase III, delta subunit, C terminal amad1_09135 PF01026 TatD related DNase amad1_09145 PF13460 NAD(P)H-binding amad1_09150 PF00072 Response regulator receiver domain amad1_09150 PF00990 Diguanylate cyclase, GGDEF domain amad1_09175 PF00561 alpha/beta hydrolase fold amad1_09180 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain amad1_09180 PF00378 Enoyl-CoA hydratase/isomerase amad1_09180 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain amad1_09185 PF02803 Thiolase, C-terminal domain amad1_09185 PF00108 Thiolase, N-terminal domain amad1_09190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain amad1_09190 PF12806 Acetyl-CoA dehydrogenase C-terminal like amad1_09190 PF02770 Acyl-CoA dehydrogenase, middle domain amad1_09190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain amad1_09205 PF04198 Putative sugar-binding domain amad1_09210 PF13419 Haloacid dehalogenase-like hydrolase amad1_09220 PF08125 Mannitol dehydrogenase C-terminal domain amad1_09220 PF01232 Mannitol dehydrogenase Rossmann domain amad1_09230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_09230 PF03466 LysR substrate binding domain amad1_09235 PF01575 MaoC like domain amad1_09245 PF00924 Mechanosensitive ion channel amad1_09250 PF07715 TonB-dependent Receptor Plug Domain amad1_09250 PF00593 TonB dependent receptor amad1_09255 PF01329 Pterin 4 alpha carbinolamine dehydratase amad1_09260 PF01627 Hpt domain amad1_09260 PF00512 His Kinase A (phospho-acceptor) domain amad1_09260 PF00072 Response regulator receiver domain amad1_09260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_09260 PF17149 Periplasmic sensor domain found in signal transduction proteins amad1_09260 PF00672 HAMP domain amad1_09265 PF00072 Response regulator receiver domain amad1_09270 PF17384 RimP C-terminal SH3 domain amad1_09270 PF02576 RimP N-terminal domain amad1_09275 PF00575 S1 RNA binding domain amad1_09275 PF08529 NusA N-terminal domain amad1_09275 PF13184 NusA-like KH domain amad1_09280 PF08364 Bacterial translation initiation factor IF-2 associated region amad1_09280 PF11987 Translation-initiation factor 2 amad1_09280 PF04760 Translation initiation factor IF-2, N-terminal region amad1_09280 PF00009 Elongation factor Tu GTP binding domain amad1_09285 PF02033 Ribosome-binding factor A amad1_09290 PF01509 TruB family pseudouridylate synthase (N terminal domain) amad1_09290 PF16198 tRNA pseudouridylate synthase B C-terminal domain amad1_09290 PF09157 Pseudouridine synthase II TruB, C-terminal amad1_09300 PF00312 Ribosomal protein S15 amad1_09305 PF00849 RNA pseudouridylate synthase amad1_09305 PF01479 S4 domain amad1_09320 PF00795 Carbon-nitrogen hydrolase amad1_09320 PF00583 Acetyltransferase (GNAT) family amad1_09360 PF10417 C-terminal domain of 1-Cys peroxiredoxin amad1_09360 PF00578 AhpC/TSA family amad1_09365 PF13192 Thioredoxin domain amad1_09365 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_09405 PF11842 Domain of unknown function (DUF3362) amad1_09405 PF04055 Radical SAM superfamily amad1_09405 PF08497 Radical SAM N-terminal amad1_09420 PF00593 TonB dependent receptor amad1_09420 PF07715 TonB-dependent Receptor Plug Domain amad1_09425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain amad1_09425 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_09435 PF13416 Bacterial extracellular solute-binding protein amad1_09445 PF00005 ABC transporter amad1_09450 PF01066 CDP-alcohol phosphatidyltransferase amad1_09475 PF00563 EAL domain amad1_09475 PF00990 Diguanylate cyclase, GGDEF domain amad1_09475 PF01590 GAF domain amad1_09475 PF00360 Phytochrome region amad1_09495 PF00239 Resolvase, N terminal domain amad1_09495 PF02796 Helix-turn-helix domain of resolvase amad1_09510 PF13005 zinc-finger binding domain of transposase IS66 amad1_09510 PF13007 Transposase C of IS166 homeodomain amad1_09510 PF13817 IS66 C-terminal element amad1_09510 PF03050 Transposase IS66 family amad1_09520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family amad1_09525 PF01668 SmpB protein amad1_09530 PF03364 Polyketide cyclase / dehydrase and lipid transport amad1_09535 PF03658 RnfH family Ubiquitin amad1_09545 PF02028 BCCT, betaine/carnitine/choline family transporter amad1_09550 PF07715 TonB-dependent Receptor Plug Domain amad1_09550 PF00593 TonB dependent receptor amad1_09560 PF13181 Tetratricopeptide repeat amad1_09570 PF03618 Kinase/pyrophosphorylase amad1_09575 PF00391 PEP-utilising enzyme, mobile domain amad1_09575 PF02896 PEP-utilising enzyme, TIM barrel domain amad1_09575 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain amad1_09585 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase amad1_09590 PF00111 2Fe-2S iron-sulfur cluster binding domain amad1_09590 PF01799 [2Fe-2S] binding domain amad1_09615 PF08007 Cupin superfamily protein amad1_09620 PF00211 Adenylate and Guanylate cyclase catalytic domain amad1_09625 PF08328 Adenylosuccinate lyase C-terminal amad1_09625 PF00206 Lyase amad1_09630 PF04356 Protein of unknown function (DUF489) amad1_09640 PF00849 RNA pseudouridylate synthase amad1_09645 PF03971 Monomeric isocitrate dehydrogenase amad1_09650 PF00313 'Cold-shock' DNA-binding domain amad1_09655 PF02617 ATP-dependent Clp protease adaptor protein ClpS amad1_09660 PF17871 AAA lid domain amad1_09660 PF07724 AAA domain (Cdc48 subfamily) amad1_09660 PF00004 ATPase family associated with various cellular activities (AAA) amad1_09660 PF10431 C-terminal, D2-small domain, of ClpB protein amad1_09660 PF02861 Clp amino terminal domain, pathogenicity island component amad1_09665 PF01176 Translation initiation factor 1A / IF-1 amad1_09670 PF04377 Arginine-tRNA-protein transferase, C terminus amad1_09670 PF04376 Arginine-tRNA-protein transferase, N terminus amad1_09675 PF03588 Leucyl/phenylalanyl-tRNA protein transferase amad1_09680 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_09685 PF04217 Protein of unknown function, DUF412 amad1_09690 PF10263 SprT-like family amad1_09695 PF01343 Peptidase family S49 amad1_09710 PF00881 Nitroreductase family amad1_09720 PF17763 Glutaminase/Asparaginase C-terminal domain amad1_09720 PF00710 Asparaginase, N-terminal amad1_09725 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family amad1_09725 PF04055 Radical SAM superfamily amad1_09730 PF03099 Biotin/lipoate A/B protein ligase family amad1_09735 PF04359 Protein of unknown function (DUF493) amad1_09740 PF00768 D-alanyl-D-alanine carboxypeptidase amad1_09740 PF07943 Penicillin-binding protein 5, C-terminal domain amad1_09745 PF03330 Lytic transglycolase amad1_09745 PF05036 Sporulation related domain amad1_09750 PF01098 Cell cycle protein amad1_09755 PF03717 Penicillin-binding Protein dimerisation domain amad1_09755 PF00905 Penicillin binding protein transpeptidase domain amad1_09760 PF02590 Predicted SPOUT methyltransferase amad1_09770 PF01467 Cytidylyltransferase-like amad1_09775 PF14840 Processivity clamp loader gamma complex DNA pol III C-term amad1_09775 PF06144 DNA polymerase III, delta subunit amad1_09780 PF04390 Lipopolysaccharide-assembly amad1_09785 PF13603 Leucyl-tRNA synthetase, Domain 2 amad1_09785 PF08264 Anticodon-binding domain of tRNA amad1_09785 PF00133 tRNA synthetases class I (I, L, M and V) amad1_09800 PF13654 AAA domain amad1_09800 PF05362 Lon protease (S16) C-terminal proteolytic domain amad1_09805 PF12697 Alpha/beta hydrolase family amad1_09810 PF00990 Diguanylate cyclase, GGDEF domain amad1_09815 PF00106 short chain dehydrogenase amad1_09820 PF01985 CRS1 / YhbY (CRM) domain amad1_09825 PF01728 FtsJ-like methyltransferase amad1_09830 PF06480 FtsH Extracellular amad1_09830 PF00004 ATPase family associated with various cellular activities (AAA) amad1_09830 PF01434 Peptidase family M41 amad1_09830 PF17862 AAA+ lid domain amad1_09835 PF00809 Pterin binding enzyme amad1_09840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain amad1_09840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III amad1_09840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II amad1_09840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I amad1_09845 PF00121 Triosephosphate isomerase amad1_09850 PF03840 Preprotein translocase SecG subunit amad1_09855 PF00563 EAL domain amad1_09855 PF00990 Diguanylate cyclase, GGDEF domain amad1_09855 PF13188 PAS domain amad1_09855 PF03707 Bacterial signalling protein N terminal repeat amad1_09860 PF01679 Proteolipid membrane potential modulator amad1_09870 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain amad1_09870 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase amad1_09875 PF00781 Diacylglycerol kinase catalytic domain amad1_09875 PF02142 MGS-like domain amad1_09900 PF01527 Transposase amad1_09905 PF00665 Integrase core domain amad1_09905 PF13333 Integrase core domain amad1_09905 PF13276 HTH-like domain amad1_09915 PF00474 Sodium:solute symporter family amad1_09940 PF00013 KH domain amad1_09940 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain amad1_09940 PF01138 3' exoribonuclease family, domain 1 amad1_09940 PF03725 3' exoribonuclease family, domain 2 amad1_09940 PF00575 S1 RNA binding domain amad1_09970 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase amad1_09970 PF03033 Glycosyltransferase family 28 N-terminal domain amad1_10010 PF01548 Transposase amad1_10010 PF02371 Transposase IS116/IS110/IS902 family amad1_10050 PF02567 Phenazine biosynthesis-like protein amad1_10055 PF01527 Transposase amad1_10060 PF00665 Integrase core domain amad1_10060 PF13276 HTH-like domain amad1_10060 PF13333 Integrase core domain amad1_10135 PF03544 Gram-negative bacterial TonB protein C-terminal amad1_10140 PF13005 zinc-finger binding domain of transposase IS66 amad1_10140 PF13007 Transposase C of IS166 homeodomain amad1_10140 PF13817 IS66 C-terminal element amad1_10140 PF03050 Transposase IS66 family amad1_10165 PF13181 Tetratricopeptide repeat amad1_10165 PF07719 Tetratricopeptide repeat amad1_10180 PF06470 SMC proteins Flexible Hinge Domain amad1_10180 PF02463 RecF/RecN/SMC N terminal domain amad1_10185 PF04354 ZipA, C-terminal FtsZ-binding domain amad1_10190 PF00533 BRCA1 C Terminus (BRCT) domain amad1_10190 PF12826 Helix-hairpin-helix motif amad1_10190 PF03120 NAD-dependent DNA ligase OB-fold domain amad1_10190 PF03119 NAD-dependent DNA ligase C4 zinc finger domain amad1_10190 PF01653 NAD-dependent DNA ligase adenylation domain amad1_10210 PF00005 ABC transporter amad1_10210 PF00664 ABC transporter transmembrane region amad1_10215 PF02606 Tetraacyldisaccharide-1-P 4'-kinase amad1_10220 PF03966 Trm112p-like protein amad1_10225 PF02348 Cytidylyltransferase amad1_10235 PF04055 Radical SAM superfamily amad1_10235 PF18693 TRAM domain amad1_10235 PF00919 Uncharacterized protein family UPF0004 amad1_10250 PF00899 ThiF family amad1_10255 PF13409 Glutathione S-transferase, N-terminal domain amad1_10260 PF05726 Pirin C-terminal cupin domain amad1_10260 PF02678 Pirin amad1_10265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain amad1_10265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I amad1_10265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II amad1_10265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III amad1_10275 PF00285 Citrate synthase, C-terminal domain amad1_10280 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit amad1_10285 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit amad1_10290 PF02910 Fumarate reductase flavoprotein C-term amad1_10290 PF00890 FAD binding domain amad1_10295 PF13085 2Fe-2S iron-sulfur cluster binding domain amad1_10300 PF02779 Transketolase, pyrimidine binding domain amad1_10300 PF00676 Dehydrogenase E1 component amad1_10300 PF16078 2-oxoglutarate dehydrogenase N-terminus amad1_10300 PF16870 2-oxoglutarate dehydrogenase C-terminal amad1_10305 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) amad1_10305 PF00364 Biotin-requiring enzyme amad1_10305 PF02817 e3 binding domain amad1_10310 PF00549 CoA-ligase amad1_10310 PF08442 ATP-grasp domain amad1_10315 PF00549 CoA-ligase amad1_10315 PF02629 CoA binding domain amad1_10325 PF04820 Tryptophan halogenase amad1_10335 PF17967 Pullulanase N2 domain amad1_10335 PF18494 Pullulanase Ins domain amad1_10335 PF03714 Bacterial pullanase-associated domain amad1_10335 PF11852 Domain of unknown function (DUF3372) amad1_10335 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) amad1_10340 PF01734 Patatin-like phospholipase amad1_10355 PF02903 Alpha amylase, N-terminal ig-like domain amad1_10355 PF16657 Maltogenic Amylase, C-terminal domain amad1_10355 PF00128 Alpha amylase, catalytic domain amad1_10360 PF09087 Cyclomaltodextrinase, N-terminal amad1_10360 PF10438 Cyclo-malto-dextrinase C-terminal domain amad1_10360 PF00128 Alpha amylase, catalytic domain amad1_10370 PF00128 Alpha amylase, catalytic domain amad1_10370 PF01833 IPT/TIG domain amad1_10370 PF02806 Alpha amylase, C-terminal all-beta domain amad1_10370 PF00686 Starch binding domain amad1_10375 PF00356 Bacterial regulatory proteins, lacI family amad1_10380 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain amad1_10380 PF00749 tRNA synthetases class I (E and Q), catalytic domain amad1_10385 PF00106 short chain dehydrogenase amad1_10390 PF12262 Bacterial virulence factor lipase N-terminal amad1_10395 PF01804 Penicillin amidase amad1_10400 PF08496 Peptidase family S49 N-terminal amad1_10400 PF01343 Peptidase family S49 amad1_10415 PF01784 NIF3 (NGG1p interacting factor 3) amad1_10425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain amad1_10425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain amad1_10430 PF00255 Glutathione peroxidase amad1_10435 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase amad1_10435 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase amad1_10445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain amad1_10445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain amad1_10445 PF02770 Acyl-CoA dehydrogenase, middle domain amad1_10450 PF00378 Enoyl-CoA hydratase/isomerase amad1_10460 PF13847 Methyltransferase domain amad1_10470 PF00884 Sulfatase amad1_10470 PF11893 Domain of unknown function (DUF3413) amad1_10475 PF07208 Protein of unknown function (DUF1414) amad1_10480 PF04245 37-kD nucleoid-associated bacterial protein amad1_10510 PF07694 5TMR of 5TMR-LYT amad1_10510 PF06580 Histidine kinase amad1_10515 PF00072 Response regulator receiver domain amad1_10515 PF04397 LytTr DNA-binding domain amad1_10520 PF00365 Phosphofructokinase amad1_10535 PF16123 Hydroxyacylglutathione hydrolase C-terminus amad1_10535 PF00753 Metallo-beta-lactamase superfamily amad1_10550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_10550 PF00497 Bacterial extracellular solute-binding proteins, family 3 amad1_10550 PF00512 His Kinase A (phospho-acceptor) domain amad1_10550 PF00989 PAS fold amad1_10550 PF01627 Hpt domain amad1_10550 PF00072 Response regulator receiver domain amad1_10570 PF00270 DEAD/DEAH box helicase amad1_10570 PF00271 Helicase conserved C-terminal domain amad1_10575 PF01144 Coenzyme A transferase amad1_10580 PF01144 Coenzyme A transferase amad1_10585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_10585 PF03466 LysR substrate binding domain amad1_10600 PF03466 LysR substrate binding domain amad1_10600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_10605 PF03313 Serine dehydratase alpha chain amad1_10605 PF03315 Serine dehydratase beta chain amad1_10610 PF00293 NUDIX domain amad1_10615 PF00425 chorismate binding enzyme amad1_10615 PF04715 Anthranilate synthase component I, N terminal region amad1_10630 PF02646 RmuC family amad1_10635 PF05922 Peptidase inhibitor I9 amad1_10635 PF02225 PA domain amad1_10635 PF00082 Subtilase family amad1_10635 PF13860 FlgD Ig-like domain amad1_10640 PF00676 Dehydrogenase E1 component amad1_10645 PF02780 Transketolase, C-terminal domain amad1_10645 PF02779 Transketolase, pyrimidine binding domain amad1_10650 PF00364 Biotin-requiring enzyme amad1_10650 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) amad1_10650 PF02817 e3 binding domain amad1_10655 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ amad1_10660 PF00069 Protein kinase domain amad1_10670 PF00132 Bacterial transferase hexapeptide (six repeats) amad1_10675 PF00266 Aminotransferase class-V amad1_10685 PF13185 GAF domain amad1_10695 PF17516 ProQ C-terminal domain amad1_10695 PF04352 ProQ/FINO family amad1_10700 PF17804 Tail specific protease N-terminal domain amad1_10700 PF00595 PDZ domain amad1_10700 PF11818 C-terminal domain of tail specific protease (DUF3340) amad1_10700 PF03572 Peptidase family S41 amad1_10705 PF00209 Sodium:neurotransmitter symporter family amad1_10715 PF01433 Peptidase family M1 domain amad1_10715 PF11940 Domain of unknown function (DUF3458) Ig-like fold amad1_10715 PF17432 Domain of unknown function (DUF3458_C) ARM repeats amad1_10730 PF07044 Protein of unknown function (DUF1329) amad1_10745 PF05088 Bacterial NAD-glutamate dehydrogenase amad1_10750 PF01180 Dihydroorotate dehydrogenase amad1_10755 PF10672 S-adenosylmethionine-dependent methyltransferase amad1_10755 PF02926 THUMP domain amad1_10755 PF01170 Putative RNA methylase family UPF0020 amad1_10775 PF04957 Ribosome modulation factor amad1_10780 PF07977 FabA-like domain amad1_10790 PF03441 FAD binding domain of DNA photolyase amad1_10790 PF00875 DNA photolyase amad1_10795 PF03441 FAD binding domain of DNA photolyase amad1_10795 PF00875 DNA photolyase amad1_10800 PF03441 FAD binding domain of DNA photolyase amad1_10800 PF00875 DNA photolyase amad1_10805 PF04244 Deoxyribodipyrimidine photo-lyase-related protein amad1_10820 PF02899 Phage integrase, N-terminal SAM-like domain amad1_10820 PF00589 Phage integrase family amad1_10830 PF01219 Prokaryotic diacylglycerol kinase amad1_10835 PF00582 Universal stress protein family amad1_10845 PF01645 Conserved region in glutamate synthase amad1_10850 PF00999 Sodium/hydrogen exchanger family amad1_10855 PF00210 Ferritin-like domain amad1_10860 PF00210 Ferritin-like domain amad1_10870 PF00115 Cytochrome C and Quinol oxidase polypeptide I amad1_10885 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP amad1_10885 PF13442 Cytochrome C oxidase, cbb3-type, subunit III amad1_10895 PF00403 Heavy-metal-associated domain amad1_10910 PF13545 Crp-like helix-turn-helix domain amad1_10910 PF00027 Cyclic nucleotide-binding domain amad1_10915 PF00582 Universal stress protein family amad1_10920 PF01171 PP-loop family amad1_10925 PF01734 Patatin-like phospholipase amad1_10945 PF01810 LysE type translocator amad1_10950 PF02146 Sir2 family amad1_10955 PF00581 Rhodanese-like domain amad1_10960 PF08534 Redoxin amad1_10970 PF01066 CDP-alcohol phosphatidyltransferase amad1_10975 PF02151 UvrB/uvrC motif amad1_10975 PF08459 UvrC Helix-hairpin-helix N-terminal amad1_10975 PF01541 GIY-YIG catalytic domain amad1_10980 PF00072 Response regulator receiver domain amad1_10980 PF00196 Bacterial regulatory proteins, luxR family amad1_10985 PF00155 Aminotransferase class I and II amad1_11000 PF07681 DoxX amad1_11005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_11005 PF03466 LysR substrate binding domain amad1_11020 PF01027 Inhibitor of apoptosis-promoting Bax1 amad1_11025 PF02635 DsrE/DsrF-like family amad1_11040 PF04358 DsrC like protein amad1_11055 PF07715 TonB-dependent Receptor Plug Domain amad1_11055 PF00593 TonB dependent receptor amad1_11060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) amad1_11060 PF02403 Seryl-tRNA synthetase N-terminal domain amad1_11065 PF02537 CrcB-like protein, Camphor Resistance (CrcB) amad1_11070 PF16193 AAA C-terminal domain amad1_11070 PF12002 MgsA AAA+ ATPase C terminal amad1_11070 PF00004 ATPase family associated with various cellular activities (AAA) amad1_11080 PF01580 FtsK/SpoIIIE family amad1_11080 PF13491 4TM region of DNA translocase FtsK/SpoIIIE amad1_11080 PF17854 FtsK alpha domain amad1_11080 PF09397 Ftsk gamma domain amad1_11085 PF01037 Lrp/AsnC ligand binding domain amad1_11090 PF05222 Alanine dehydrogenase/PNT, N-terminal domain amad1_11090 PF01262 Alanine dehydrogenase/PNT, C-terminal domain amad1_11095 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family amad1_11100 PF18073 Rubredoxin metal binding domain amad1_11115 PF00216 Bacterial DNA-binding protein amad1_11120 PF00575 S1 RNA binding domain amad1_11125 PF02224 Cytidylate kinase amad1_11140 PF00266 Aminotransferase class-V amad1_11145 PF00521 DNA gyrase/topoisomerase IV, subunit A amad1_11145 PF03989 DNA gyrase C-terminal domain, beta-propeller amad1_11155 PF00317 Ribonucleotide reductase, all-alpha domain amad1_11155 PF02867 Ribonucleotide reductase, barrel domain amad1_11155 PF03477 ATP cone domain amad1_11160 PF00268 Ribonucleotide reductase, small chain amad1_11165 PF00111 2Fe-2S iron-sulfur cluster binding domain amad1_11175 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_11175 PF00724 NADH:flavin oxidoreductase / NADH oxidase family amad1_11180 PF03707 Bacterial signalling protein N terminal repeat amad1_11180 PF00563 EAL domain amad1_11180 PF00990 Diguanylate cyclase, GGDEF domain amad1_11185 PF00892 EamA-like transporter family amad1_11190 PF01259 SAICAR synthetase amad1_11195 PF06804 NlpB/DapX lipoprotein amad1_11200 PF00701 Dihydrodipicolinate synthetase family amad1_11210 PF00578 AhpC/TSA family amad1_11215 PF01594 AI-2E family transporter amad1_11220 PF01435 Peptidase family M48 amad1_11230 PF03960 ArsC family amad1_11235 PF03358 NADPH-dependent FMN reductase amad1_11245 PF00308 Bacterial dnaA protein amad1_11255 PF00586 AIR synthase related protein, N-terminal domain amad1_11255 PF02769 AIR synthase related protein, C-terminal domain amad1_11260 PF00551 Formyl transferase amad1_11270 PF02770 Acyl-CoA dehydrogenase, middle domain amad1_11270 PF09317 Domain of unknown function (DUF1974) amad1_11270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain amad1_11270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain amad1_11280 PF00196 Bacterial regulatory proteins, luxR family amad1_11280 PF00072 Response regulator receiver domain amad1_11285 PF13649 Methyltransferase domain amad1_11290 PF08003 Protein of unknown function (DUF1698) amad1_11295 PF00485 Phosphoribulokinase / Uridine kinase family amad1_11310 PF00128 Alpha amylase, catalytic domain amad1_11315 PF13419 Haloacid dehalogenase-like hydrolase amad1_11320 PF03453 MoeA N-terminal region (domain I and II) amad1_11320 PF03454 MoeA C-terminal region (domain IV) amad1_11320 PF00994 Probable molybdopterin binding domain amad1_11325 PF01554 MatE amad1_11340 PF01434 Peptidase family M41 amad1_11340 PF17862 AAA+ lid domain amad1_11340 PF00004 ATPase family associated with various cellular activities (AAA) amad1_11345 PF00291 Pyridoxal-phosphate dependent enzyme amad1_11375 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system amad1_11395 PF01548 Transposase amad1_11395 PF02371 Transposase IS116/IS110/IS902 family amad1_11415 PF02567 Phenazine biosynthesis-like protein amad1_11425 PF00378 Enoyl-CoA hydratase/isomerase amad1_11440 PF00255 Glutathione peroxidase amad1_11445 PF02525 Flavodoxin-like fold amad1_11455 PF01053 Cys/Met metabolism PLP-dependent enzyme amad1_11470 PF00155 Aminotransferase class I and II amad1_11475 PF10459 Peptidase S46 amad1_11480 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 amad1_11495 PF02770 Acyl-CoA dehydrogenase, middle domain amad1_11495 PF12806 Acetyl-CoA dehydrogenase C-terminal like amad1_11495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain amad1_11495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain amad1_11500 PF07883 Cupin domain amad1_11500 PF12833 Helix-turn-helix domain amad1_11505 PF00593 TonB dependent receptor amad1_11505 PF07715 TonB-dependent Receptor Plug Domain amad1_11515 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) amad1_11525 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain amad1_11525 PF00326 Prolyl oligopeptidase family amad1_11530 PF00873 AcrB/AcrD/AcrF family amad1_11535 PF13533 Biotin-lipoyl like amad1_11545 PF01012 Electron transfer flavoprotein domain amad1_11545 PF00766 Electron transfer flavoprotein FAD-binding domain amad1_11550 PF01012 Electron transfer flavoprotein domain amad1_11560 PF00816 H-NS histone family amad1_11565 PF00561 alpha/beta hydrolase fold amad1_11575 PF00258 Flavodoxin amad1_11580 PF00672 HAMP domain amad1_11580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain amad1_11585 PF01475 Ferric uptake regulator family amad1_11590 PF01063 Amino-transferase class IV amad1_11595 PF02626 Carboxyltransferase domain, subdomain A and B amad1_11600 PF02682 Carboxyltransferase domain, subdomain C and D amad1_11605 PF03746 LamB/YcsF family amad1_11610 PF13509 S1 domain amad1_11610 PF17783 CvfB-like winged helix domain amad1_11615 PF02566 OsmC-like protein amad1_11620 PF13533 Biotin-lipoyl like amad1_11625 PF00873 AcrB/AcrD/AcrF family amad1_11630 PF00873 AcrB/AcrD/AcrF family amad1_11645 PF00155 Aminotransferase class I and II amad1_11665 PF13442 Cytochrome C oxidase, cbb3-type, subunit III amad1_11665 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase amad1_11665 PF00034 Cytochrome c amad1_11670 PF00111 2Fe-2S iron-sulfur cluster binding domain amad1_11670 PF01799 [2Fe-2S] binding domain amad1_11695 PF12146 Serine aminopeptidase, S33 amad1_11700 PF12833 Helix-turn-helix domain amad1_11700 PF06719 AraC-type transcriptional regulator N-terminus amad1_11715 PF01966 HD domain amad1_11715 PF13286 Phosphohydrolase-associated domain amad1_11720 PF00174 Oxidoreductase molybdopterin binding domain amad1_11725 PF01794 Ferric reductase like transmembrane component amad1_11740 PF02810 SEC-C motif amad1_11750 PF00107 Zinc-binding dehydrogenase amad1_11750 PF08240 Alcohol dehydrogenase GroES-like domain amad1_11760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain amad1_11760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain amad1_11760 PF02770 Acyl-CoA dehydrogenase, middle domain amad1_11770 PF00593 TonB dependent receptor amad1_11770 PF07715 TonB-dependent Receptor Plug Domain amad1_11790 PF06969 HemN C-terminal domain amad1_11790 PF04055 Radical SAM superfamily amad1_11795 PF00005 ABC transporter amad1_11795 PF03459 TOBE domain amad1_11800 PF00528 Binding-protein-dependent transport system inner membrane component amad1_11810 PF02391 MoaE protein amad1_11815 PF02597 ThiS family amad1_11820 PF01967 MoaC family amad1_11825 PF00994 Probable molybdopterin binding domain amad1_11830 PF00899 ThiF family amad1_11840 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system amad1_11845 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system amad1_11860 PF00155 Aminotransferase class I and II amad1_11865 PF03435 Saccharopine dehydrogenase NADP binding domain amad1_11870 PF00155 Aminotransferase class I and II amad1_11885 PF01717 Cobalamin-independent synthase, Catalytic domain amad1_11885 PF08267 Cobalamin-independent synthase, N-terminal domain amad1_11890 PF07715 TonB-dependent Receptor Plug Domain amad1_11890 PF00593 TonB dependent receptor amad1_11900 PF00892 EamA-like transporter family amad1_11915 PF13538 UvrD-like helicase C-terminal domain amad1_11920 PF00580 UvrD/REP helicase N-terminal domain amad1_11920 PF13361 UvrD-like helicase C-terminal domain amad1_11920 PF12705 PD-(D/E)XK nuclease superfamily amad1_11925 PF17946 RecC C-terminal domain amad1_11945 PF00501 AMP-binding enzyme amad1_11950 PF00563 EAL domain amad1_11950 PF01590 GAF domain amad1_11950 PF00360 Phytochrome region amad1_11950 PF00990 Diguanylate cyclase, GGDEF domain amad1_11955 PF17770 Ribonuclease J C-terminal domain amad1_11955 PF12706 Beta-lactamase superfamily domain amad1_11955 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain amad1_11970 PF03466 LysR substrate binding domain amad1_11970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_11990 PF01022 Bacterial regulatory protein, arsR family amad1_12000 PF03466 LysR substrate binding domain amad1_12000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_12010 PF02954 Bacterial regulatory protein, Fis family amad1_12010 PF00158 Sigma-54 interaction domain amad1_12010 PF00072 Response regulator receiver domain amad1_12020 PF00512 His Kinase A (phospho-acceptor) domain amad1_12020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_12020 PF00360 Phytochrome region amad1_12020 PF01590 GAF domain amad1_12020 PF08446 PAS fold amad1_12025 PF00072 Response regulator receiver domain amad1_12030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_12030 PF00512 His Kinase A (phospho-acceptor) domain amad1_12030 PF09308 LuxQ, periplasmic amad1_12030 PF00072 Response regulator receiver domain amad1_12060 PF07043 Protein of unknown function (DUF1328) amad1_12080 PF07023 Protein of unknown function (DUF1315) amad1_12095 PF01235 Sodium:alanine symporter family amad1_12100 PF00246 Zinc carboxypeptidase amad1_12100 PF18027 Cytosolic carboxypeptidase N-terminal domain amad1_12105 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain amad1_12105 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain amad1_12115 PF01641 SelR domain amad1_12120 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain amad1_12120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase amad1_12125 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) amad1_12125 PF00128 Alpha amylase, catalytic domain amad1_12130 PF00128 Alpha amylase, catalytic domain amad1_12130 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) amad1_12130 PF02806 Alpha amylase, C-terminal all-beta domain amad1_12135 PF02446 4-alpha-glucanotransferase amad1_12140 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain amad1_12140 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain amad1_12145 PF01263 Aldose 1-epimerase amad1_12150 PF01081 KDPG and KHG aldolase amad1_12155 PF02685 Glucokinase amad1_12160 PF00920 Dehydratase family amad1_12165 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase amad1_12170 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain amad1_12170 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain amad1_12175 PF01380 SIS domain amad1_12175 PF01418 Helix-turn-helix domain, rpiR family amad1_12180 PF00224 Pyruvate kinase, barrel domain amad1_12180 PF02887 Pyruvate kinase, alpha/beta domain amad1_12185 PF07969 Amidohydrolase family amad1_12190 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term amad1_12190 PF12833 Helix-turn-helix domain amad1_12195 PF12806 Acetyl-CoA dehydrogenase C-terminal like amad1_12195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain amad1_12195 PF02770 Acyl-CoA dehydrogenase, middle domain amad1_12195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain amad1_12200 PF01012 Electron transfer flavoprotein domain amad1_12205 PF01012 Electron transfer flavoprotein domain amad1_12205 PF00766 Electron transfer flavoprotein FAD-binding domain amad1_12215 PF03600 Citrate transporter amad1_12215 PF02080 TrkA-C domain amad1_12225 PF01081 KDPG and KHG aldolase amad1_12230 PF02685 Glucokinase amad1_12235 PF00920 Dehydratase family amad1_12240 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase amad1_12245 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain amad1_12245 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain amad1_12250 PF01418 Helix-turn-helix domain, rpiR family amad1_12250 PF01380 SIS domain amad1_12255 PF00224 Pyruvate kinase, barrel domain amad1_12255 PF02887 Pyruvate kinase, alpha/beta domain amad1_12260 PF01048 Phosphorylase superfamily amad1_12280 PF04972 BON domain amad1_12310 PF09347 Domain of unknown function (DUF1989) amad1_12350 PF04231 Endonuclease I amad1_12355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain amad1_12355 PF02743 Cache domain amad1_12355 PF00672 HAMP domain amad1_12370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_12370 PF03466 LysR substrate binding domain amad1_12375 PF00465 Iron-containing alcohol dehydrogenase amad1_12380 PF00563 EAL domain amad1_12380 PF03707 Bacterial signalling protein N terminal repeat amad1_12380 PF00990 Diguanylate cyclase, GGDEF domain amad1_12390 PF11849 Domain of unknown function (DUF3369) amad1_12395 PF00512 His Kinase A (phospho-acceptor) domain amad1_12395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_12395 PF00497 Bacterial extracellular solute-binding proteins, family 3 amad1_12415 PF00145 C-5 cytosine-specific DNA methylase amad1_12485 PF00939 Sodium:sulfate symporter transmembrane region amad1_12490 PF00692 dUTPase amad1_12495 PF10609 NUBPL iron-transfer P-loop NTPase amad1_12500 PF08264 Anticodon-binding domain of tRNA amad1_12500 PF09334 tRNA synthetases class I (M) amad1_12500 PF01588 Putative tRNA binding domain amad1_12505 PF05552 Conserved TM helix amad1_12505 PF00924 Mechanosensitive ion channel amad1_12510 PF08241 Methyltransferase domain amad1_12515 PF16123 Hydroxyacylglutathione hydrolase C-terminus amad1_12515 PF00753 Metallo-beta-lactamase superfamily amad1_12520 PF01476 LysM domain amad1_12520 PF01464 Transglycosylase SLT domain amad1_12545 PF01406 tRNA synthetases class I (C) catalytic domain amad1_12545 PF09190 DALR domain amad1_12550 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD amad1_12555 PF00149 Calcineurin-like phosphoesterase amad1_12565 PF15975 Flotillin amad1_12565 PF01145 SPFH domain / Band 7 family amad1_12575 PF00128 Alpha amylase, catalytic domain amad1_12580 PF01638 HxlR-like helix-turn-helix amad1_12585 PF08240 Alcohol dehydrogenase GroES-like domain amad1_12585 PF00107 Zinc-binding dehydrogenase amad1_12590 PF06628 Catalase-related immune-responsive amad1_12590 PF18011 C-terminal domain found in long catalases amad1_12590 PF00199 Catalase amad1_12595 PF00107 Zinc-binding dehydrogenase amad1_12595 PF08240 Alcohol dehydrogenase GroES-like domain amad1_12600 PF03466 LysR substrate binding domain amad1_12600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_12625 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) amad1_12635 PF00156 Phosphoribosyl transferase domain amad1_12640 PF02674 Colicin V production protein amad1_12645 PF05036 Sporulation related domain amad1_12650 PF08245 Mur ligase middle domain amad1_12650 PF02875 Mur ligase family, glutamate ligase domain amad1_12655 PF17848 Acetyl-coA carboxylase zinc finger domain amad1_12655 PF01039 Carboxyl transferase domain amad1_12660 PF01416 tRNA pseudouridine synthase amad1_12670 PF02774 Semialdehyde dehydrogenase, dimerisation domain amad1_12670 PF01118 Semialdehyde dehydrogenase, NAD binding domain amad1_12675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain amad1_12675 PF11890 Domain of unknown function (DUF3410) amad1_12675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain amad1_12680 PF00596 Class II Aldolase and Adducin N-terminal domain amad1_12695 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH amad1_12700 PF00144 Beta-lactamase amad1_12705 PF02801 Beta-ketoacyl synthase, C-terminal domain amad1_12705 PF00109 Beta-ketoacyl synthase, N-terminal domain amad1_12710 PF00501 AMP-binding enzyme amad1_12710 PF13193 AMP-binding enzyme C-terminal domain amad1_12720 PF05430 S-adenosyl-L-methionine-dependent methyltransferase amad1_12720 PF01266 FAD dependent oxidoreductase amad1_12755 PF13411 MerR HTH family regulatory protein amad1_12760 PF00107 Zinc-binding dehydrogenase amad1_12760 PF08240 Alcohol dehydrogenase GroES-like domain amad1_12790 PF00005 ABC transporter amad1_12795 PF02667 Short chain fatty acid transporter amad1_12800 PF01627 Hpt domain amad1_12800 PF00672 HAMP domain amad1_12800 PF00072 Response regulator receiver domain amad1_12800 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) amad1_12800 PF00512 His Kinase A (phospho-acceptor) domain amad1_12800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_12805 PF02627 Carboxymuconolactone decarboxylase family amad1_12810 PF00675 Insulinase (Peptidase family M16) amad1_12810 PF05193 Peptidase M16 inactive domain amad1_12825 PF04315 Elongation factor P hydroxylase amad1_12855 PF00724 NADH:flavin oxidoreductase / NADH oxidase family amad1_12855 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_12860 PF00378 Enoyl-CoA hydratase/isomerase amad1_12865 PF02909 Tetracyclin repressor-like, C-terminal domain amad1_12865 PF00440 Bacterial regulatory proteins, tetR family amad1_12870 PF00732 GMC oxidoreductase amad1_12870 PF05199 GMC oxidoreductase amad1_12880 PF06974 Protein of unknown function (DUF1298) amad1_12880 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain amad1_12890 PF04286 Protein of unknown function (DUF445) amad1_12915 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain amad1_12915 PF00326 Prolyl oligopeptidase family amad1_12920 PF07840 FadR C-terminal domain amad1_12920 PF00392 Bacterial regulatory proteins, gntR family amad1_12925 PF06450 Bacterial Na+/H+ antiporter B (NhaB) amad1_12930 PF02600 Disulfide bond formation protein DsbB amad1_12935 PF13302 Acetyltransferase (GNAT) domain amad1_12945 PF03692 Putative zinc- or iron-chelating domain amad1_12950 PF01557 Fumarylacetoacetate (FAA) hydrolase family amad1_12960 PF05166 YcgL domain amad1_12965 PF00570 HRDC domain amad1_12965 PF01612 3'-5' exonuclease amad1_12970 PF13193 AMP-binding enzyme C-terminal domain amad1_12970 PF00501 AMP-binding enzyme amad1_12975 PF12697 Alpha/beta hydrolase family amad1_12990 PF00814 Glycoprotease family amad1_12995 PF13307 Helicase C-terminal domain amad1_12995 PF06733 DEAD_2 amad1_13020 PF00128 Alpha amylase, catalytic domain amad1_13045 PF07715 TonB-dependent Receptor Plug Domain amad1_13045 PF00593 TonB dependent receptor amad1_13055 PF01634 ATP phosphoribosyltransferase amad1_13055 PF08029 HisG, C-terminal domain amad1_13060 PF00815 Histidinol dehydrogenase amad1_13065 PF00155 Aminotransferase class I and II amad1_13070 PF00475 Imidazoleglycerol-phosphate dehydratase amad1_13075 PF00117 Glutamine amidotransferase class-I amad1_13080 PF00977 Histidine biosynthesis protein amad1_13085 PF00977 Histidine biosynthesis protein amad1_13090 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase amad1_13090 PF01502 Phosphoribosyl-AMP cyclohydrolase amad1_13105 PF01226 Formate/nitrite transporter amad1_13110 PF05193 Peptidase M16 inactive domain amad1_13110 PF00675 Insulinase (Peptidase family M16) amad1_13115 PF10502 Signal peptidase, peptidase S26 amad1_13120 PF07715 TonB-dependent Receptor Plug Domain amad1_13120 PF00593 TonB dependent receptor amad1_13140 PF05191 Adenylate kinase, active site lid amad1_13145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_13145 PF00183 Hsp90 protein amad1_13150 PF13662 Toprim domain amad1_13150 PF02132 RecR protein amad1_13165 PF02575 YbaB/EbfC DNA-binding family amad1_13180 PF00156 Phosphoribosyl transferase domain amad1_13190 PF05114 Protein of unknown function (DUF692) amad1_13200 PF02687 FtsX-like permease family amad1_13200 PF00005 ABC transporter amad1_13200 PF12704 MacB-like periplasmic core domain amad1_13210 PF00990 Diguanylate cyclase, GGDEF domain amad1_13210 PF00360 Phytochrome region amad1_13210 PF01590 GAF domain amad1_13210 PF00563 EAL domain amad1_13215 PF01066 CDP-alcohol phosphatidyltransferase amad1_13235 PF09330 D-lactate dehydrogenase, membrane binding amad1_13235 PF01565 FAD binding domain amad1_13240 PF10431 C-terminal, D2-small domain, of ClpB protein amad1_13240 PF17871 AAA lid domain amad1_13240 PF02861 Clp amino terminal domain, pathogenicity island component amad1_13240 PF07724 AAA domain (Cdc48 subfamily) amad1_13240 PF00004 ATPase family associated with various cellular activities (AAA) amad1_13250 PF01479 S4 domain amad1_13250 PF00849 RNA pseudouridylate synthase amad1_13255 PF13525 Outer membrane lipoprotein amad1_13265 PF04542 Sigma-70 region 2 amad1_13265 PF04545 Sigma-70, region 4 amad1_13280 PF00106 short chain dehydrogenase amad1_13300 PF13677 Membrane MotB of proton-channel complex MotA/MotB amad1_13300 PF00691 OmpA family amad1_13305 PF01618 MotA/TolQ/ExbB proton channel family amad1_13310 PF02609 Exonuclease VII small subunit amad1_13315 PF00348 Polyprenyl synthetase amad1_13320 PF02779 Transketolase, pyrimidine binding domain amad1_13320 PF02780 Transketolase, C-terminal domain amad1_13320 PF13292 1-deoxy-D-xylulose-5-phosphate synthase amad1_13325 PF04608 Phosphatidylglycerophosphatase A amad1_13330 PF00586 AIR synthase related protein, N-terminal domain amad1_13330 PF02769 AIR synthase related protein, C-terminal domain amad1_13335 PF01029 NusB family amad1_13340 PF00885 6,7-dimethyl-8-ribityllumazine synthase amad1_13345 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase amad1_13345 PF00925 GTP cyclohydrolase II amad1_13350 PF00677 Lumazine binding domain amad1_13355 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region amad1_13355 PF01872 RibD C-terminal domain amad1_13360 PF03477 ATP cone domain amad1_13365 PF00464 Serine hydroxymethyltransferase amad1_13375 PF00005 ABC transporter amad1_13375 PF12848 ABC transporter amad1_13385 PF18073 Rubredoxin metal binding domain amad1_13395 PF18429 Domain of unknown function (DUF5609) amad1_13405 PF01026 TatD related DNase amad1_13410 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region amad1_13410 PF01243 Pyridoxamine 5'-phosphate oxidase amad1_13415 PF01926 50S ribosome-binding GTPase amad1_13415 PF07650 KH domain amad1_13420 PF14622 Ribonuclease-III-like amad1_13420 PF00035 Double-stranded RNA binding motif amad1_13425 PF10502 Signal peptidase, peptidase S26 amad1_13430 PF06421 GTP-binding protein LepA C-terminus amad1_13430 PF03144 Elongation factor Tu domain 2 amad1_13430 PF00679 Elongation factor G C-terminus amad1_13430 PF00009 Elongation factor Tu GTP binding domain amad1_13440 PF03888 MucB/RseB N-terminal domain amad1_13440 PF17188 MucB/RseB C-terminal domain amad1_13450 PF04542 Sigma-70 region 2 amad1_13450 PF08281 Sigma-70, region 4 amad1_13455 PF02910 Fumarate reductase flavoprotein C-term amad1_13455 PF00890 FAD binding domain amad1_13470 PF03937 Flavinator of succinate dehydrogenase amad1_13480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase amad1_13485 PF00543 Nitrogen regulatory protein P-II amad1_13490 PF02540 NAD synthase amad1_13525 PF00114 Pilin (bacterial filament) amad1_13525 PF07963 Prokaryotic N-terminal methylation motif amad1_13550 PF02401 LytB protein amad1_13555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase amad1_13560 PF01252 Signal peptidase (SPase) II amad1_13565 PF00133 tRNA synthetases class I (I, L, M and V) amad1_13565 PF06827 Zinc finger found in FPG and IleRS amad1_13565 PF08264 Anticodon-binding domain of tRNA amad1_13570 PF01687 Riboflavin kinase amad1_13570 PF06574 FAD synthetase amad1_13575 PF03023 Lipid II flippase MurJ amad1_13580 PF01649 Ribosomal protein S20 amad1_13585 PF00106 short chain dehydrogenase amad1_13600 PF01758 Sodium Bile acid symporter family amad1_13620 PF07687 Peptidase dimerisation domain amad1_13620 PF01546 Peptidase family M20/M25/M40 amad1_13630 PF13145 PPIC-type PPIASE domain amad1_13635 PF00216 Bacterial DNA-binding protein amad1_13645 PF00004 ATPase family associated with various cellular activities (AAA) amad1_13645 PF02190 ATP-dependent protease La (LON) substrate-binding domain amad1_13645 PF05362 Lon protease (S16) C-terminal proteolytic domain amad1_13650 PF06689 ClpX C4-type zinc finger amad1_13650 PF07724 AAA domain (Cdc48 subfamily) amad1_13650 PF10431 C-terminal, D2-small domain, of ClpB protein amad1_13655 PF00574 Clp protease amad1_13660 PF05698 Bacterial trigger factor protein (TF) C-terminus amad1_13660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase amad1_13660 PF05697 Bacterial trigger factor protein (TF) amad1_13665 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain amad1_13665 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain amad1_13675 PF01980 tRNA-methyltransferase O amad1_13675 PF18389 TrmO C-terminal domain amad1_13680 PF03129 Anticodon binding domain amad1_13680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) amad1_13685 PF00753 Metallo-beta-lactamase superfamily amad1_13685 PF12706 Beta-lactamase superfamily domain amad1_13690 PF02253 Phospholipase A1 amad1_13695 PF00850 Histone deacetylase domain amad1_13700 PF00672 HAMP domain amad1_13700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain amad1_13705 PF00117 Glutamine amidotransferase class-I amad1_13705 PF02540 NAD synthase amad1_13705 PF00958 GMP synthase C terminal domain amad1_13710 PF00571 CBS domain amad1_13710 PF00478 IMP dehydrogenase / GMP reductase domain amad1_13715 PF13742 OB-fold nucleic acid binding domain amad1_13715 PF02601 Exonuclease VII, large subunit amad1_13730 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal amad1_13730 PF01926 50S ribosome-binding GTPase amad1_13735 PF13360 PQQ-like domain amad1_13740 PF09976 Tetratricopeptide repeat-like domain amad1_13745 PF13393 Histidyl-tRNA synthetase amad1_13745 PF03129 Anticodon binding domain amad1_13750 PF04551 GcpE protein amad1_13755 PF13464 Domain of unknown function (DUF4115) amad1_13765 PF04055 Radical SAM superfamily amad1_13770 PF00334 Nucleoside diphosphate kinase amad1_13775 PF02657 Fe-S metabolism associated domain amad1_13780 PF01883 Iron-sulfur cluster assembly protein amad1_13785 PF01521 Iron-sulphur cluster biosynthesis amad1_13790 PF00266 Aminotransferase class-V amad1_13795 PF01458 Uncharacterized protein family (UPF0051) amad1_13800 PF00005 ABC transporter amad1_13805 PF01458 Uncharacterized protein family (UPF0051) amad1_13810 PF00266 Aminotransferase class-V amad1_13815 PF02082 Transcriptional regulator amad1_13820 PF00743 Flavin-binding monooxygenase-like amad1_13825 PF06426 Serine acetyltransferase, N-terminal amad1_13825 PF00132 Bacterial transferase hexapeptide (six repeats) amad1_13830 PF00588 SpoU rRNA Methylase family amad1_13835 PF00459 Inositol monophosphatase family amad1_13850 PF07549 SecD/SecF GG Motif amad1_13850 PF02355 Protein export membrane protein amad1_13855 PF07549 SecD/SecF GG Motif amad1_13855 PF13721 SecD export protein N-terminal TM region amad1_13855 PF02355 Protein export membrane protein amad1_13860 PF02699 Preprotein translocase subunit amad1_13865 PF01702 Queuine tRNA-ribosyltransferase amad1_13870 PF02547 Queuosine biosynthesis protein amad1_13885 PF04012 PspA/IM30 family amad1_13890 PF07885 Ion channel amad1_13905 PF06693 Protein of unknown function (DUF1190) amad1_13910 PF03738 Glutathionylspermidine synthase preATP-grasp amad1_13925 PF00005 ABC transporter amad1_13940 PF04960 Glutaminase amad1_13945 PF00245 Alkaline phosphatase amad1_13950 PF00072 Response regulator receiver domain amad1_13955 PF00463 Isocitrate lyase family amad1_13960 PF03466 LysR substrate binding domain amad1_13960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_13965 PF01274 Malate synthase amad1_13975 PF01370 NAD dependent epimerase/dehydratase family amad1_14000 PF13180 PDZ domain amad1_14000 PF17820 PDZ domain amad1_14020 PF00534 Glycosyl transferases group 1 amad1_14020 PF13439 Glycosyltransferase Family 4 amad1_14040 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain amad1_14040 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain amad1_14040 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain amad1_14045 PF02350 UDP-N-acetylglucosamine 2-epimerase amad1_14075 PF01757 Acyltransferase family amad1_14080 PF00733 Asparagine synthase amad1_14080 PF13537 Glutamine amidotransferase domain amad1_14085 PF00862 Sucrose synthase amad1_14085 PF00534 Glycosyl transferases group 1 amad1_14095 PF01943 Polysaccharide biosynthesis protein amad1_14125 PF00733 Asparagine synthase amad1_14125 PF13537 Glutamine amidotransferase domain amad1_14140 PF01522 Polysaccharide deacetylase amad1_14145 PF02397 Bacterial sugar transferase amad1_14160 PF13614 AAA domain amad1_14170 PF13401 AAA domain amad1_14170 PF01471 Putative peptidoglycan binding domain amad1_14185 PF01541 GIY-YIG catalytic domain amad1_14200 PF08335 GlnD PII-uridylyltransferase amad1_14200 PF03710 Glutamate-ammonia ligase adenylyltransferase amad1_14230 PF03279 Bacterial lipid A biosynthesis acyltransferase amad1_14245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain amad1_14245 PF09317 Domain of unknown function (DUF1974) amad1_14245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain amad1_14245 PF02770 Acyl-CoA dehydrogenase, middle domain amad1_14250 PF04886 PT repeat amad1_14250 PF00593 TonB dependent receptor amad1_14250 PF07715 TonB-dependent Receptor Plug Domain amad1_14260 PF03707 Bacterial signalling protein N terminal repeat amad1_14260 PF00563 EAL domain amad1_14260 PF13188 PAS domain amad1_14260 PF00990 Diguanylate cyclase, GGDEF domain amad1_14265 PF00265 Thymidine kinase amad1_14275 PF00356 Bacterial regulatory proteins, lacI family amad1_14310 PF01926 50S ribosome-binding GTPase amad1_14315 PF08032 RNA 2'-O ribose methyltransferase substrate binding amad1_14315 PF00588 SpoU rRNA Methylase family amad1_14320 PF00378 Enoyl-CoA hydratase/isomerase amad1_14320 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain amad1_14320 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain amad1_14335 PF00171 Aldehyde dehydrogenase family amad1_14340 PF00732 GMC oxidoreductase amad1_14340 PF05199 GMC oxidoreductase amad1_14355 PF05971 RNA methyltransferase amad1_14380 PF02770 Acyl-CoA dehydrogenase, middle domain amad1_14380 PF18158 Adaptive response protein AidB N-terminal domain amad1_14380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain amad1_14410 PF00486 Transcriptional regulatory protein, C terminal amad1_14410 PF00072 Response regulator receiver domain amad1_14415 PF16527 Two-component sensor protein CpxA, periplasmic domain amad1_14415 PF00672 HAMP domain amad1_14415 PF00512 His Kinase A (phospho-acceptor) domain amad1_14415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_14425 PF03965 Penicillinase repressor amad1_14430 PF03544 Gram-negative bacterial TonB protein C-terminal amad1_14445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily amad1_14455 PF00111 2Fe-2S iron-sulfur cluster binding domain amad1_14455 PF01799 [2Fe-2S] binding domain amad1_14460 PF00941 FAD binding domain in molybdopterin dehydrogenase amad1_14460 PF03450 CO dehydrogenase flavoprotein C-terminal domain amad1_14465 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase amad1_14465 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain amad1_14490 PF00106 short chain dehydrogenase amad1_14495 PF01965 DJ-1/PfpI family amad1_14500 PF03631 Virulence factor BrkB amad1_14510 PF07152 YaeQ protein amad1_14540 PF07690 Major Facilitator Superfamily amad1_14555 PF16124 RecQ zinc-binding amad1_14555 PF00270 DEAD/DEAH box helicase amad1_14555 PF00271 Helicase conserved C-terminal domain amad1_14555 PF09382 RQC domain amad1_14555 PF00570 HRDC domain amad1_14575 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) amad1_14575 PF00672 HAMP domain amad1_14575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_14575 PF00072 Response regulator receiver domain amad1_14575 PF01627 Hpt domain amad1_14575 PF00512 His Kinase A (phospho-acceptor) domain amad1_14585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_14585 PF00512 His Kinase A (phospho-acceptor) domain amad1_14585 PF08446 PAS fold amad1_14585 PF00360 Phytochrome region amad1_14585 PF01590 GAF domain amad1_14590 PF07995 Glucose / Sorbosone dehydrogenase amad1_14595 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH amad1_14605 PF00072 Response regulator receiver domain amad1_14605 PF00486 Transcriptional regulatory protein, C terminal amad1_14610 PF11808 Phosphate regulon sensor protein PhoR amad1_14610 PF00989 PAS fold amad1_14610 PF00512 His Kinase A (phospho-acceptor) domain amad1_14610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_14630 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase amad1_14630 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain amad1_14635 PF14760 Rnk N-terminus amad1_14635 PF01272 Transcription elongation factor, GreA/GreB, C-term amad1_14645 PF02599 Global regulator protein family amad1_14650 PF01145 SPFH domain / Band 7 family amad1_14670 PF07724 AAA domain (Cdc48 subfamily) amad1_14670 PF10431 C-terminal, D2-small domain, of ClpB protein amad1_14695 PF00403 Heavy-metal-associated domain amad1_14695 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_14695 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain amad1_14700 PF00403 Heavy-metal-associated domain amad1_14705 PF02411 MerT mercuric transport protein amad1_14710 PF13411 MerR HTH family regulatory protein amad1_14740 PF00873 AcrB/AcrD/AcrF family amad1_14745 PF07715 TonB-dependent Receptor Plug Domain amad1_14745 PF07660 Secretin and TonB N terminus short domain amad1_14745 PF00593 TonB dependent receptor amad1_14750 PF00873 AcrB/AcrD/AcrF family amad1_14770 PF01545 Cation efflux family amad1_14770 PF16916 Dimerisation domain of Zinc Transporter amad1_14780 PF01545 Cation efflux family amad1_14785 PF01568 Molydopterin dinucleotide binding domain amad1_14785 PF00384 Molybdopterin oxidoreductase amad1_14790 PF13007 Transposase C of IS166 homeodomain amad1_14790 PF13005 zinc-finger binding domain of transposase IS66 amad1_14790 PF03050 Transposase IS66 family amad1_14790 PF13817 IS66 C-terminal element amad1_14805 PF00970 Oxidoreductase FAD-binding domain amad1_14805 PF00042 Globin amad1_14805 PF00175 Oxidoreductase NAD-binding domain amad1_14810 PF00158 Sigma-54 interaction domain amad1_14810 PF01590 GAF domain amad1_14830 PF01597 Glycine cleavage H-protein amad1_14835 PF08669 Glycine cleavage T-protein C-terminal barrel domain amad1_14835 PF01571 Aminomethyltransferase folate-binding domain amad1_14840 PF01979 Amidohydrolase family amad1_14845 PF01869 BadF/BadG/BcrA/BcrD ATPase family amad1_14850 PF03466 LysR substrate binding domain amad1_14850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_14855 PF02652 L-lactate permease amad1_14865 PF01321 Creatinase/Prolidase N-terminal domain amad1_14865 PF00557 Metallopeptidase family M24 amad1_14880 PF01494 FAD binding domain amad1_14885 PF01494 FAD binding domain amad1_14890 PF05195 Aminopeptidase P, N-terminal domain amad1_14890 PF00557 Metallopeptidase family M24 amad1_14895 PF03695 Uncharacterised protein family (UPF0149) amad1_14900 PF00294 pfkB family carbohydrate kinase amad1_14905 PF01156 Inosine-uridine preferring nucleoside hydrolase amad1_14910 PF00497 Bacterial extracellular solute-binding proteins, family 3 amad1_14910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_14910 PF00512 His Kinase A (phospho-acceptor) domain amad1_14910 PF01627 Hpt domain amad1_14910 PF00989 PAS fold amad1_14910 PF00072 Response regulator receiver domain amad1_14915 PF01812 5-formyltetrahydrofolate cyclo-ligase family amad1_14920 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) amad1_14925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain amad1_14925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain amad1_14925 PF01842 ACT domain amad1_14945 PF06945 Protein of unknown function (DUF1289) amad1_14955 PF00873 AcrB/AcrD/AcrF family amad1_14960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion amad1_14965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_14965 PF03466 LysR substrate binding domain amad1_14980 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_14980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain amad1_14985 PF02817 e3 binding domain amad1_14985 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) amad1_14985 PF00364 Biotin-requiring enzyme amad1_14990 PF17831 Pyruvate dehydrogenase E1 component middle domain amad1_14990 PF00456 Transketolase, thiamine diphosphate binding domain amad1_14995 PF07729 FCD domain amad1_14995 PF00392 Bacterial regulatory proteins, gntR family amad1_15005 PF01510 N-acetylmuramoyl-L-alanine amidase amad1_15015 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain amad1_15015 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain amad1_15025 PF00482 Type II secretion system (T2SS), protein F amad1_15030 PF06750 Bacterial Peptidase A24 N-terminal domain amad1_15030 PF01478 Type IV leader peptidase family amad1_15035 PF01121 Dephospho-CoA kinase amad1_15040 PF07072 Cell division protein amad1_15050 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family amad1_15055 PF00293 NUDIX domain amad1_15060 PF01043 SecA preprotein cross-linking domain amad1_15060 PF07516 SecA Wing and Scaffold domain amad1_15060 PF02810 SEC-C motif amad1_15060 PF07517 SecA DEAD-like domain amad1_15065 PF01476 LysM domain amad1_15065 PF08525 Opacity-associated protein A N-terminal motif amad1_15065 PF01551 Peptidase family M23 amad1_15070 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase amad1_15075 PF12327 FtsZ family, C-terminal domain amad1_15075 PF00091 Tubulin/FtsZ family, GTPase domain amad1_15080 PF02491 SHS2 domain inserted in FTSA amad1_15085 PF03799 Cell division protein FtsQ amad1_15085 PF08478 POTRA domain, FtsQ-type amad1_15090 PF07478 D-ala D-ala ligase C-terminus amad1_15090 PF01820 D-ala D-ala ligase N-terminus amad1_15095 PF01225 Mur ligase family, catalytic domain amad1_15095 PF02875 Mur ligase family, glutamate ligase domain amad1_15095 PF08245 Mur ligase middle domain amad1_15100 PF03033 Glycosyltransferase family 28 N-terminal domain amad1_15100 PF04101 Glycosyltransferase family 28 C-terminal domain amad1_15105 PF01098 Cell cycle protein amad1_15110 PF02875 Mur ligase family, glutamate ligase domain amad1_15110 PF08245 Mur ligase middle domain amad1_15115 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 amad1_15115 PF00953 Glycosyl transferase family 4 amad1_15120 PF01225 Mur ligase family, catalytic domain amad1_15120 PF02875 Mur ligase family, glutamate ligase domain amad1_15120 PF08245 Mur ligase middle domain amad1_15125 PF02875 Mur ligase family, glutamate ligase domain amad1_15125 PF08245 Mur ligase middle domain amad1_15125 PF01225 Mur ligase family, catalytic domain amad1_15130 PF00905 Penicillin binding protein transpeptidase domain amad1_15130 PF03717 Penicillin-binding Protein dimerisation domain amad1_15135 PF04999 Cell division protein FtsL amad1_15140 PF01795 MraW methylase family amad1_15145 PF02381 MraZ protein, putative antitoxin-like amad1_15195 PF00462 Glutaredoxin amad1_15195 PF08534 Redoxin amad1_15200 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain amad1_15210 PF17158 Membrane-associated sensor, integral membrane domain amad1_15210 PF00990 Diguanylate cyclase, GGDEF domain amad1_15220 PF02954 Bacterial regulatory protein, Fis family amad1_15220 PF00158 Sigma-54 interaction domain amad1_15220 PF00072 Response regulator receiver domain amad1_15225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_15225 PF00072 Response regulator receiver domain amad1_15225 PF00512 His Kinase A (phospho-acceptor) domain amad1_15225 PF09456 RcsC Alpha-Beta-Loop (ABL) amad1_15230 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III amad1_15230 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal amad1_15255 PF05552 Conserved TM helix amad1_15255 PF00924 Mechanosensitive ion channel amad1_15260 PF04452 RNA methyltransferase amad1_15265 PF02951 Prokaryotic glutathione synthetase, N-terminal domain amad1_15265 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain amad1_15270 PF02622 Uncharacterized ACR, COG1678 amad1_15275 PF03652 Holliday junction resolvase amad1_15285 PF00437 Type II/IV secretion system protein amad1_15290 PF00437 Type II/IV secretion system protein amad1_15295 PF01168 Alanine racemase, N-terminal domain amad1_15300 PF03807 NADP oxidoreductase coenzyme F420-dependent amad1_15300 PF14748 Pyrroline-5-carboxylate reductase dimerisation amad1_15305 PF02325 YGGT family amad1_15315 PF00724 NADH:flavin oxidoreductase / NADH oxidase family amad1_15315 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_15330 PF14834 Glutathione S-transferase, C-terminal domain amad1_15330 PF02798 Glutathione S-transferase, N-terminal domain amad1_15335 PF00080 Copper/zinc superoxide dismutase (SODC) amad1_15340 PF02566 OsmC-like protein amad1_15345 PF01625 Peptide methionine sulfoxide reductase amad1_15360 PF03591 AzlC protein amad1_15370 PF07690 Major Facilitator Superfamily amad1_15375 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) amad1_15380 PF03883 Peroxide stress protein YaaA amad1_15390 PF00923 Transaldolase/Fructose-6-phosphate aldolase amad1_15395 PF00342 Phosphoglucose isomerase amad1_15405 PF03167 Uracil DNA glycosylase superfamily amad1_15410 PF00291 Pyridoxal-phosphate dependent enzyme amad1_15410 PF14821 Threonine synthase N terminus amad1_15415 PF08544 GHMP kinases C terminal amad1_15415 PF00288 GHMP kinases N terminal domain amad1_15420 PF03447 Homoserine dehydrogenase, NAD binding domain amad1_15420 PF01842 ACT domain amad1_15420 PF00742 Homoserine dehydrogenase amad1_15420 PF13840 ACT domain amad1_15420 PF00696 Amino acid kinase family amad1_15425 PF17755 UvrA DNA-binding domain amad1_15430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_15430 PF03466 LysR substrate binding domain amad1_15435 PF08240 Alcohol dehydrogenase GroES-like domain amad1_15435 PF00107 Zinc-binding dehydrogenase amad1_15445 PF01022 Bacterial regulatory protein, arsR family amad1_15455 PF03358 NADPH-dependent FMN reductase amad1_15460 PF01758 Sodium Bile acid symporter family amad1_15465 PF01339 CheB methylesterase amad1_15465 PF00072 Response regulator receiver domain amad1_15470 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) amad1_15475 PF00072 Response regulator receiver domain amad1_15475 PF00486 Transcriptional regulatory protein, C terminal amad1_15480 PF00672 HAMP domain amad1_15480 PF00512 His Kinase A (phospho-acceptor) domain amad1_15480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_15510 PF00962 Adenosine/AMP deaminase amad1_15515 PF04116 Fatty acid hydroxylase superfamily amad1_15540 PF16653 Saccharopine dehydrogenase C-terminal domain amad1_15540 PF03435 Saccharopine dehydrogenase NADP binding domain amad1_15545 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain amad1_15555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases amad1_15560 PF04348 LppC putative lipoprotein amad1_15565 PF02021 Uncharacterised protein family UPF0102 amad1_15570 PF00534 Glycosyl transferases group 1 amad1_15575 PF13580 SIS domain amad1_15580 PF04972 BON domain amad1_15585 PF07690 Major Facilitator Superfamily amad1_15595 PF00893 Small Multidrug Resistance protein amad1_15600 PF07730 Histidine kinase amad1_15605 PF00072 Response regulator receiver domain amad1_15605 PF00196 Bacterial regulatory proteins, luxR family amad1_15620 PF07715 TonB-dependent Receptor Plug Domain amad1_15620 PF00593 TonB dependent receptor amad1_15635 PF00285 Citrate synthase, C-terminal domain amad1_15640 PF00694 Aconitase C-terminal domain amad1_15640 PF00330 Aconitase family (aconitate hydratase) amad1_15645 PF04303 PrpF protein amad1_15650 PF00990 Diguanylate cyclase, GGDEF domain amad1_15655 PF00480 ROK family amad1_15660 PF13660 Domain of unknown function (DUF4147) amad1_15660 PF05161 MOFRL family amad1_15665 PF00474 Sodium:solute symporter family amad1_15705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_15705 PF00989 PAS fold amad1_15705 PF00512 His Kinase A (phospho-acceptor) domain amad1_15705 PF00072 Response regulator receiver domain amad1_15705 PF18415 Histidine kinase receptor ArcB trans-membrane domain amad1_15705 PF01627 Hpt domain amad1_15710 PF01510 N-acetylmuramoyl-L-alanine amidase amad1_15715 PF00310 Glutamine amidotransferases class-II amad1_15715 PF04898 Glutamate synthase central domain amad1_15715 PF01645 Conserved region in glutamate synthase amad1_15715 PF01493 GXGXG motif amad1_15720 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_15720 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster amad1_15735 PF01048 Phosphorylase superfamily amad1_15740 PF03186 CobD/Cbib protein amad1_15745 PF01497 Periplasmic binding protein amad1_15750 PF00581 Rhodanese-like domain amad1_15765 PF01266 FAD dependent oxidoreductase amad1_15770 PF00579 tRNA synthetases class I (W and Y) amad1_15780 PF01476 LysM domain amad1_15780 PF01551 Peptidase family M23 amad1_15785 PF03702 Anhydro-N-acetylmuramic acid kinase amad1_15790 PF07690 Major Facilitator Superfamily amad1_15800 PF00724 NADH:flavin oxidoreductase / NADH oxidase family amad1_15810 PF01053 Cys/Met metabolism PLP-dependent enzyme amad1_15815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain amad1_15815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain amad1_15820 PF00043 Glutathione S-transferase, C-terminal domain amad1_15820 PF02798 Glutathione S-transferase, N-terminal domain amad1_15825 PF01521 Iron-sulphur cluster biosynthesis amad1_15835 PF03976 Polyphosphate kinase 2 (PPK2) amad1_15840 PF03776 Septum formation topological specificity factor MinE amad1_15845 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain amad1_15850 PF03775 Septum formation inhibitor MinC, C-terminal domain amad1_15850 PF05209 Septum formation inhibitor MinC, N-terminal domain amad1_15855 PF00206 Lyase amad1_15855 PF10415 Fumarase C C-terminus amad1_15860 PF00127 Copper binding proteins, plastocyanin/azurin family amad1_15890 PF01566 Natural resistance-associated macrophage protein amad1_15895 PF00155 Aminotransferase class I and II amad1_15900 PF08448 PAS fold amad1_15900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_15900 PF13188 PAS domain amad1_15900 PF00512 His Kinase A (phospho-acceptor) domain amad1_15900 PF00072 Response regulator receiver domain amad1_15915 PF00120 Glutamine synthetase, catalytic domain amad1_15915 PF03951 Glutamine synthetase, beta-Grasp domain amad1_15925 PF00989 PAS fold amad1_15925 PF00512 His Kinase A (phospho-acceptor) domain amad1_15925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_15930 PF02954 Bacterial regulatory protein, Fis family amad1_15930 PF00158 Sigma-54 interaction domain amad1_15930 PF00072 Response regulator receiver domain amad1_15935 PF00072 Response regulator receiver domain amad1_15940 PF01553 Acyltransferase amad1_15945 PF06877 Regulator of ribonuclease activity B amad1_15985 PF01627 Hpt domain amad1_15985 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) amad1_15985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_15985 PF00072 Response regulator receiver domain amad1_15985 PF00672 HAMP domain amad1_15985 PF00512 His Kinase A (phospho-acceptor) domain amad1_15990 PF08264 Anticodon-binding domain of tRNA amad1_15990 PF00133 tRNA synthetases class I (I, L, M and V) amad1_15990 PF10458 Valyl tRNA synthetase tRNA binding arm amad1_15995 PF04364 DNA polymerase III chi subunit, HolC amad1_16000 PF02789 Cytosol aminopeptidase family, N-terminal domain amad1_16000 PF00883 Cytosol aminopeptidase family, catalytic domain amad1_16005 PF03739 Lipopolysaccharide export system permease LptF/LptG amad1_16010 PF03739 Lipopolysaccharide export system permease LptF/LptG amad1_16025 PF04545 Sigma-70, region 4 amad1_16025 PF04542 Sigma-70 region 2 amad1_16065 PF01396 Topoisomerase DNA binding C4 zinc finger amad1_16065 PF01751 Toprim domain amad1_16065 PF01131 DNA topoisomerase amad1_16095 PF00589 Phage integrase family amad1_16095 PF02899 Phage integrase, N-terminal SAM-like domain amad1_16110 PF06114 IrrE N-terminal-like domain amad1_16215 PF00392 Bacterial regulatory proteins, gntR family amad1_16215 PF07729 FCD domain amad1_16225 PF16355 Domain of unknown function (DUF4982) amad1_16225 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 amad1_16225 PF00703 Glycosyl hydrolases family 2 amad1_16225 PF02836 Glycosyl hydrolases family 2, TIM barrel domain amad1_16225 PF02837 Glycosyl hydrolases family 2, sugar binding domain amad1_16235 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain amad1_16235 PF13378 Enolase C-terminal domain-like amad1_16240 PF03648 Glycosyl hydrolase family 67 N-terminus amad1_16240 PF07488 Glycosyl hydrolase family 67 middle domain amad1_16240 PF07477 Glycosyl hydrolase family 67 C-terminus amad1_16245 PF04616 Glycosyl hydrolases family 43 amad1_16245 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain amad1_16255 PF13185 GAF domain amad1_16255 PF00990 Diguanylate cyclase, GGDEF domain amad1_16280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold amad1_16280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain amad1_16285 PF00512 His Kinase A (phospho-acceptor) domain amad1_16285 PF01627 Hpt domain amad1_16285 PF00072 Response regulator receiver domain amad1_16285 PF00497 Bacterial extracellular solute-binding proteins, family 3 amad1_16285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_16290 PF01594 AI-2E family transporter amad1_16305 PF00005 ABC transporter amad1_16310 PF01032 FecCD transport family amad1_16315 PF01497 Periplasmic binding protein amad1_16325 PF07715 TonB-dependent Receptor Plug Domain amad1_16325 PF00593 TonB dependent receptor amad1_16335 PF00230 Major intrinsic protein amad1_16340 PF00892 EamA-like transporter family amad1_16355 PF00593 TonB dependent receptor amad1_16355 PF07715 TonB-dependent Receptor Plug Domain amad1_16365 PF02659 Putative manganese efflux pump amad1_16375 PF10996 Beta-Casp domain amad1_16375 PF00753 Metallo-beta-lactamase superfamily amad1_16375 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain amad1_16380 PF02696 Uncharacterized ACR, YdiU/UPF0061 family amad1_16385 PF01321 Creatinase/Prolidase N-terminal domain amad1_16385 PF00557 Metallopeptidase family M24 amad1_16390 PF05221 S-adenosyl-L-homocysteine hydrolase amad1_16390 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain amad1_16405 PF03547 Membrane transport protein amad1_16410 PF13360 PQQ-like domain amad1_16410 PF13442 Cytochrome C oxidase, cbb3-type, subunit III amad1_16435 PF00005 ABC transporter amad1_16445 PF00883 Cytosol aminopeptidase family, catalytic domain amad1_16445 PF02789 Cytosol aminopeptidase family, N-terminal domain amad1_16450 PF12706 Beta-lactamase superfamily domain amad1_16455 PF03070 TENA/THI-4/PQQC family amad1_16460 PF05402 Coenzyme PQQ synthesis protein D (PqqD) amad1_16465 PF13186 Iron-sulfur cluster-binding domain amad1_16465 PF04055 Radical SAM superfamily amad1_16490 PF00196 Bacterial regulatory proteins, luxR family amad1_16490 PF00072 Response regulator receiver domain amad1_16495 PF00512 His Kinase A (phospho-acceptor) domain amad1_16495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_16505 PF12801 4Fe-4S binding domain amad1_16505 PF04205 FMN-binding domain amad1_16510 PF00171 Aldehyde dehydrogenase family amad1_16515 PF00072 Response regulator receiver domain amad1_16515 PF00196 Bacterial regulatory proteins, luxR family amad1_16520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_16520 PF05231 MASE1 amad1_16520 PF07730 Histidine kinase amad1_16525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_16525 PF03466 LysR substrate binding domain amad1_16530 PF00171 Aldehyde dehydrogenase family amad1_16535 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase amad1_16535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase amad1_16540 PF02028 BCCT, betaine/carnitine/choline family transporter amad1_16555 PF07715 TonB-dependent Receptor Plug Domain amad1_16555 PF00593 TonB dependent receptor amad1_16560 PF00149 Calcineurin-like phosphoesterase amad1_16560 PF16656 Purple acid Phosphatase, N-terminal domain amad1_16565 PF03466 LysR substrate binding domain amad1_16565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_16570 PF01070 FMN-dependent dehydrogenase amad1_16575 PF09330 D-lactate dehydrogenase, membrane binding amad1_16575 PF01565 FAD binding domain amad1_16580 PF00196 Bacterial regulatory proteins, luxR family amad1_16585 PF03783 Curli production assembly/transport component CsgG amad1_16610 PF00082 Subtilase family amad1_16615 PF00072 Response regulator receiver domain amad1_16615 PF00196 Bacterial regulatory proteins, luxR family amad1_16630 PF00270 DEAD/DEAH box helicase amad1_16630 PF00271 Helicase conserved C-terminal domain amad1_16635 PF13340 Putative transposase of IS4/5 family (DUF4096) amad1_16640 PF02322 Cytochrome bd terminal oxidase subunit II amad1_16645 PF01654 Cytochrome bd terminal oxidase subunit I amad1_16660 PF00871 Acetokinase family amad1_16670 PF00067 Cytochrome P450 amad1_16680 PF00462 Glutaredoxin amad1_16690 PF00990 Diguanylate cyclase, GGDEF domain amad1_16740 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system amad1_16755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain amad1_16755 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_16770 PF00115 Cytochrome C and Quinol oxidase polypeptide I amad1_16780 PF00871 Acetokinase family amad1_16795 PF01654 Cytochrome bd terminal oxidase subunit I amad1_16800 PF02322 Cytochrome bd terminal oxidase subunit II amad1_16805 PF13340 Putative transposase of IS4/5 family (DUF4096) amad1_16830 PF00392 Bacterial regulatory proteins, gntR family amad1_16830 PF07729 FCD domain amad1_16835 PF00924 Mechanosensitive ion channel amad1_16835 PF12795 Mechanosensitive ion channel porin domain amad1_16835 PF12794 Mechanosensitive ion channel inner membrane domain 1 amad1_16850 PF00141 Peroxidase amad1_16870 PF03466 LysR substrate binding domain amad1_16870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_16880 PF01925 Sulfite exporter TauE/SafE amad1_16890 PF08769 Sporulation initiation factor Spo0A C terminal amad1_16890 PF00072 Response regulator receiver domain amad1_16900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_16900 PF00512 His Kinase A (phospho-acceptor) domain amad1_16910 PF03104 DNA polymerase family B, exonuclease domain amad1_16910 PF00136 DNA polymerase family B amad1_16920 PF13193 AMP-binding enzyme C-terminal domain amad1_16920 PF00501 AMP-binding enzyme amad1_16935 PF05958 tRNA (Uracil-5-)-methyltransferase amad1_16940 PF00440 Bacterial regulatory proteins, tetR family amad1_16950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain amad1_16950 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_16960 PF03167 Uracil DNA glycosylase superfamily amad1_16965 PF00990 Diguanylate cyclase, GGDEF domain amad1_16965 PF03707 Bacterial signalling protein N terminal repeat amad1_16965 PF00563 EAL domain amad1_16975 PF01507 Phosphoadenosine phosphosulfate reductase family amad1_16980 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain amad1_16980 PF01077 Nitrite and sulphite reductase 4Fe-4S domain amad1_16985 PF00258 Flavodoxin amad1_16985 PF00175 Oxidoreductase NAD-binding domain amad1_16985 PF00667 FAD binding domain amad1_17005 PF04024 PspC domain amad1_17010 PF04012 PspA/IM30 family amad1_17020 PF01207 Dihydrouridine synthase (Dus) amad1_17040 PF01389 OmpA-like transmembrane domain amad1_17040 PF00691 OmpA family amad1_17045 PF02190 ATP-dependent protease La (LON) substrate-binding domain amad1_17045 PF05362 Lon protease (S16) C-terminal proteolytic domain amad1_17045 PF00004 ATPase family associated with various cellular activities (AAA) amad1_17050 PF00990 Diguanylate cyclase, GGDEF domain amad1_17050 PF00563 EAL domain amad1_17050 PF03707 Bacterial signalling protein N terminal repeat amad1_17055 PF00756 Putative esterase amad1_17060 PF01553 Acyltransferase amad1_17065 PF01553 Acyltransferase amad1_17070 PF00924 Mechanosensitive ion channel amad1_17085 PF01370 NAD dependent epimerase/dehydratase family amad1_17090 PF00209 Sodium:neurotransmitter symporter family amad1_17095 PF00106 short chain dehydrogenase amad1_17105 PF01625 Peptide methionine sulfoxide reductase amad1_17120 PF00258 Flavodoxin amad1_17130 PF02472 Biopolymer transport protein ExbD/TolR amad1_17145 PF13181 Tetratricopeptide repeat amad1_17145 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) amad1_17150 PF01270 Glycosyl hydrolases family 8 amad1_17160 PF03552 Cellulose synthase amad1_17160 PF00535 Glycosyl transferase family 2 amad1_17160 PF07238 PilZ domain amad1_17175 PF05175 Methyltransferase small domain amad1_17180 PF13460 NAD(P)H-binding amad1_17185 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region amad1_17185 PF00326 Prolyl oligopeptidase family amad1_17190 PF08000 Bacterial PH domain amad1_17195 PF08448 PAS fold amad1_17195 PF00990 Diguanylate cyclase, GGDEF domain amad1_17195 PF00563 EAL domain amad1_17205 PF00291 Pyridoxal-phosphate dependent enzyme amad1_17210 PF07969 Amidohydrolase family amad1_17220 PF00753 Metallo-beta-lactamase superfamily amad1_17230 PF03466 LysR substrate binding domain amad1_17230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_17235 PF13230 Glutamine amidotransferases class-II amad1_17240 PF05360 yiaA/B two helix domain amad1_17260 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin amad1_17265 PF00593 TonB dependent receptor amad1_17265 PF07715 TonB-dependent Receptor Plug Domain amad1_17270 PF00171 Aldehyde dehydrogenase family amad1_17275 PF01613 Flavin reductase like domain amad1_17280 PF00881 Nitroreductase family amad1_17285 PF00561 alpha/beta hydrolase fold amad1_17290 PF01042 Endoribonuclease L-PSP amad1_17295 PF00857 Isochorismatase family amad1_17300 PF00296 Luciferase-like monooxygenase amad1_17305 PF00440 Bacterial regulatory proteins, tetR family amad1_17305 PF08362 YcdC-like protein, C-terminal region amad1_17320 PF09905 DNA-binding protein VF530 amad1_17325 PF16123 Hydroxyacylglutathione hydrolase C-terminus amad1_17325 PF00753 Metallo-beta-lactamase superfamily amad1_17335 PF11798 IMS family HHH motif amad1_17335 PF00817 impB/mucB/samB family amad1_17335 PF11799 impB/mucB/samB family C-terminal domain amad1_17345 PF02424 ApbE family amad1_17350 PF00111 2Fe-2S iron-sulfur cluster binding domain amad1_17350 PF00175 Oxidoreductase NAD-binding domain amad1_17350 PF00970 Oxidoreductase FAD-binding domain amad1_17355 PF02508 Rnf-Nqr subunit, membrane protein amad1_17360 PF02508 Rnf-Nqr subunit, membrane protein amad1_17365 PF04205 FMN-binding domain amad1_17370 PF03116 NQR2, RnfD, RnfE family amad1_17375 PF11973 NQRA C-terminal domain amad1_17375 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) amad1_17380 PF07055 Enoyl reductase FAD binding domain amad1_17380 PF12241 Trans-2-enoyl-CoA reductase catalytic region amad1_17380 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase amad1_17385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase amad1_17385 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase amad1_17390 PF00311 Phosphoenolpyruvate carboxylase amad1_17395 PF00141 Peroxidase amad1_17400 PF00141 Peroxidase amad1_17410 PF00056 lactate/malate dehydrogenase, NAD binding domain amad1_17410 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain amad1_17415 PF02863 Arginine repressor, C-terminal domain amad1_17415 PF01316 Arginine repressor, DNA binding domain amad1_17440 PF00485 Phosphoribulokinase / Uridine kinase family amad1_17445 PF07662 Na+ dependent nucleoside transporter C-terminus amad1_17445 PF01773 Na+ dependent nucleoside transporter N-terminus amad1_17445 PF07670 Nucleoside recognition amad1_17465 PF00990 Diguanylate cyclase, GGDEF domain amad1_17465 PF00072 Response regulator receiver domain amad1_17470 PF07733 Bacterial DNA polymerase III alpha NTPase domain amad1_17470 PF02811 PHP domain amad1_17470 PF00929 Exonuclease amad1_17470 PF17657 Bacterial DNA polymerase III alpha subunit finger domain amad1_17470 PF14579 Helix-hairpin-helix motif amad1_17475 PF00005 ABC transporter amad1_17475 PF00571 CBS domain amad1_17480 PF00474 Sodium:solute symporter family amad1_17490 PF07689 KaiB domain amad1_17490 PF00512 His Kinase A (phospho-acceptor) domain amad1_17490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_17500 PF08443 RimK-like ATP-grasp domain amad1_17500 PF18030 RimK PreATP-grasp domain amad1_17510 PF18030 RimK PreATP-grasp domain amad1_17510 PF08443 RimK-like ATP-grasp domain amad1_17520 PF00072 Response regulator receiver domain amad1_17520 PF00196 Bacterial regulatory proteins, luxR family amad1_17535 PF02690 Na+/Pi-cotransporter amad1_17540 PF00248 Aldo/keto reductase family amad1_17555 PF00563 EAL domain amad1_17555 PF08447 PAS fold amad1_17555 PF00990 Diguanylate cyclase, GGDEF domain amad1_17555 PF08448 PAS fold amad1_17565 PF03144 Elongation factor Tu domain 2 amad1_17565 PF00009 Elongation factor Tu GTP binding domain amad1_17565 PF03143 Elongation factor Tu C-terminal domain amad1_17570 PF03309 Type III pantothenate kinase amad1_17575 PF03099 Biotin/lipoate A/B protein ligase family amad1_17575 PF08279 HTH domain amad1_17575 PF02237 Biotin protein ligase C terminal domain amad1_17580 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain amad1_17580 PF01565 FAD binding domain amad1_17585 PF00672 HAMP domain amad1_17585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain amad1_17585 PF12729 Four helix bundle sensory module for signal transduction amad1_17610 PF00005 ABC transporter amad1_17610 PF03412 Peptidase C39 family amad1_17610 PF00664 ABC transporter transmembrane region amad1_17615 PF03466 LysR substrate binding domain amad1_17615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_17630 PF01050 Mannose-6-phosphate isomerase amad1_17630 PF00483 Nucleotidyl transferase amad1_17635 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain amad1_17635 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain amad1_17635 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain amad1_17640 PF00535 Glycosyl transferase family 2 amad1_17645 PF16363 GDP-mannose 4,6 dehydratase amad1_17650 PF04321 RmlD substrate binding domain amad1_17655 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase amad1_17660 PF00483 Nucleotidyl transferase amad1_17680 PF13181 Tetratricopeptide repeat amad1_17720 PF00535 Glycosyl transferase family 2 amad1_17805 PF13005 zinc-finger binding domain of transposase IS66 amad1_17805 PF13007 Transposase C of IS166 homeodomain amad1_17805 PF13817 IS66 C-terminal element amad1_17805 PF03050 Transposase IS66 family amad1_17825 PF13817 IS66 C-terminal element amad1_17825 PF13007 Transposase C of IS166 homeodomain amad1_17825 PF03050 Transposase IS66 family amad1_17825 PF13005 zinc-finger binding domain of transposase IS66 amad1_17865 PF00700 Bacterial flagellin C-terminal helical region amad1_17865 PF00669 Bacterial flagellin N-terminal helical region amad1_17875 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system amad1_17880 PF01196 Ribosomal protein L17 amad1_17885 PF01000 RNA polymerase Rpb3/RpoA insert domain amad1_17885 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain amad1_17885 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain amad1_17890 PF01479 S4 domain amad1_17890 PF00163 Ribosomal protein S4/S9 N-terminal domain amad1_17895 PF00411 Ribosomal protein S11 amad1_17900 PF00416 Ribosomal protein S13/S18 amad1_17905 PF00444 Ribosomal protein L36 amad1_17910 PF00344 SecY translocase amad1_17915 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A amad1_17920 PF00327 Ribosomal protein L30p/L7e amad1_17925 PF00333 Ribosomal protein S5, N-terminal domain amad1_17925 PF03719 Ribosomal protein S5, C-terminal domain amad1_17930 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast amad1_17935 PF00347 Ribosomal protein L6 amad1_17940 PF00410 Ribosomal protein S8 amad1_17945 PF00253 Ribosomal protein S14p/S29e amad1_17950 PF00673 ribosomal L5P family C-terminus amad1_17950 PF00281 Ribosomal protein L5 amad1_17955 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 amad1_17955 PF00467 KOW motif amad1_17960 PF00238 Ribosomal protein L14p/L23e amad1_17965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_17965 PF00072 Response regulator receiver domain amad1_17965 PF09308 LuxQ, periplasmic amad1_17965 PF00512 His Kinase A (phospho-acceptor) domain amad1_17985 PF00588 SpoU rRNA Methylase family amad1_17985 PF08032 RNA 2'-O ribose methyltransferase substrate binding amad1_17990 PF00575 S1 RNA binding domain amad1_17990 PF00773 RNB domain amad1_17990 PF08206 Ribonuclease B OB domain amad1_17990 PF08461 Ribonuclease R winged-helix domain amad1_17990 PF17876 Cold shock domain amad1_18005 PF16655 PhoD-like phosphatase, N-terminal domain amad1_18005 PF09423 PhoD-like phosphatase amad1_18020 PF07715 TonB-dependent Receptor Plug Domain amad1_18020 PF00593 TonB dependent receptor amad1_18035 PF08238 Sel1 repeat amad1_18045 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase amad1_18050 PF00175 Oxidoreductase NAD-binding domain amad1_18050 PF00970 Oxidoreductase FAD-binding domain amad1_18065 PF04389 Peptidase family M28 amad1_18075 PF01590 GAF domain amad1_18075 PF08446 PAS fold amad1_18075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_18075 PF00360 Phytochrome region amad1_18075 PF00512 His Kinase A (phospho-acceptor) domain amad1_18085 PF01654 Cytochrome bd terminal oxidase subunit I amad1_18090 PF02322 Cytochrome bd terminal oxidase subunit II amad1_18100 PF01037 Lrp/AsnC ligand binding domain amad1_18100 PF13404 AsnC-type helix-turn-helix domain amad1_18110 PF00313 'Cold-shock' DNA-binding domain amad1_18115 PF03109 ABC1 family amad1_18125 PF01209 ubiE/COQ5 methyltransferase family amad1_18135 PF01432 Peptidase family M3 amad1_18140 PF00072 Response regulator receiver domain amad1_18150 PF00512 His Kinase A (phospho-acceptor) domain amad1_18150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_18150 PF00989 PAS fold amad1_18155 PF02954 Bacterial regulatory protein, Fis family amad1_18155 PF00072 Response regulator receiver domain amad1_18155 PF00158 Sigma-54 interaction domain amad1_18160 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_18160 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain amad1_18165 PF04879 Molybdopterin oxidoreductase Fe4S4 domain amad1_18165 PF00384 Molybdopterin oxidoreductase amad1_18165 PF01568 Molydopterin dinucleotide binding domain amad1_18165 PF10518 TAT (twin-arginine translocation) pathway signal sequence amad1_18170 PF07676 WD40-like Beta Propeller Repeat amad1_18170 PF00326 Prolyl oligopeptidase family amad1_18225 PF00005 ABC transporter amad1_18225 PF00664 ABC transporter transmembrane region amad1_18225 PF03412 Peptidase C39 family amad1_18230 PF00196 Bacterial regulatory proteins, luxR family amad1_18230 PF00072 Response regulator receiver domain amad1_18240 PF08443 RimK-like ATP-grasp domain amad1_18240 PF18030 RimK PreATP-grasp domain amad1_18250 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system amad1_18255 PF07724 AAA domain (Cdc48 subfamily) amad1_18255 PF00004 ATPase family associated with various cellular activities (AAA) amad1_18260 PF00227 Proteasome subunit amad1_18265 PF05036 Sporulation related domain amad1_18270 PF00271 Helicase conserved C-terminal domain amad1_18270 PF18074 Primosomal protein N C-terminal domain amad1_18270 PF00270 DEAD/DEAH box helicase amad1_18270 PF17764 3′ DNA-binding domain (3′BD) amad1_18270 PF18319 PriA DNA helicase Cys-rich region (CRR) domain amad1_18275 PF01197 Ribosomal protein L31 amad1_18285 PF00390 Malic enzyme, N-terminal domain amad1_18285 PF03949 Malic enzyme, NAD binding domain amad1_18290 PF01340 Met Apo-repressor, MetJ amad1_18295 PF02219 Methylenetetrahydrofolate reductase amad1_18300 PF03631 Virulence factor BrkB amad1_18315 PF00561 alpha/beta hydrolase fold amad1_18320 PF02580 D-Tyr-tRNA(Tyr) deacylase amad1_18325 PF00583 Acetyltransferase (GNAT) family amad1_18325 PF09500 Putative thioesterase (yiiD_Cterm) amad1_18330 PF00140 Sigma-70 factor, region 1.2 amad1_18330 PF04545 Sigma-70, region 4 amad1_18330 PF04542 Sigma-70 region 2 amad1_18335 PF08668 HDOD domain amad1_18335 PF00563 EAL domain amad1_18340 PF08668 HDOD domain amad1_18340 PF00563 EAL domain amad1_18345 PF18075 FtsX extracellular domain amad1_18350 PF00005 ABC transporter amad1_18355 PF02881 SRP54-type protein, helical bundle domain amad1_18355 PF00448 SRP54-type protein, GTPase domain amad1_18370 PF01914 MarC family integral membrane protein amad1_18380 PF00883 Cytosol aminopeptidase family, catalytic domain amad1_18380 PF12404 Peptidase amad1_18385 PF17746 SfsA N-terminal OB domain amad1_18385 PF03749 Sugar fermentation stimulation protein RE domain amad1_18390 PF01258 Prokaryotic dksA/traR C4-type zinc finger amad1_18395 PF00749 tRNA synthetases class I (E and Q), catalytic domain amad1_18400 PF12627 Probable RNA and SrmB- binding site of polymerase A amad1_18400 PF01743 Poly A polymerase head domain amad1_18400 PF12626 Polymerase A arginine-rich C-terminus amad1_18405 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) amad1_18410 PF02548 Ketopantoate hydroxymethyltransferase amad1_18415 PF02569 Pantoate-beta-alanine ligase amad1_18420 PF00282 Pyridoxal-dependent decarboxylase conserved domain amad1_18440 PF01061 ABC-2 type transporter amad1_18445 PF00005 ABC transporter amad1_18450 PF00072 Response regulator receiver domain amad1_18450 PF00486 Transcriptional regulatory protein, C terminal amad1_18455 PF00512 His Kinase A (phospho-acceptor) domain amad1_18455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_18455 PF00672 HAMP domain amad1_18460 PF07715 TonB-dependent Receptor Plug Domain amad1_18460 PF00593 TonB dependent receptor amad1_18465 PF18331 PKHD-type hydroxylase C-terminal domain amad1_18465 PF13640 2OG-Fe(II) oxygenase superfamily amad1_18480 PF00571 CBS domain amad1_18480 PF01595 Cyclin M transmembrane N-terminal domain amad1_18490 PF13722 5TM C-terminal transporter carbon starvation CstA amad1_18490 PF02554 Carbon starvation protein CstA amad1_18510 PF03144 Elongation factor Tu domain 2 amad1_18510 PF03143 Elongation factor Tu C-terminal domain amad1_18510 PF00009 Elongation factor Tu GTP binding domain amad1_18515 PF14492 Elongation Factor G, domain II amad1_18515 PF00009 Elongation factor Tu GTP binding domain amad1_18515 PF03144 Elongation factor Tu domain 2 amad1_18515 PF00679 Elongation factor G C-terminus amad1_18515 PF03764 Elongation factor G, domain IV amad1_18520 PF00177 Ribosomal protein S7p/S5e amad1_18525 PF00164 Ribosomal protein S12/S23 amad1_18530 PF04997 RNA polymerase Rpb1, domain 1 amad1_18530 PF00623 RNA polymerase Rpb1, domain 2 amad1_18530 PF04983 RNA polymerase Rpb1, domain 3 amad1_18530 PF05000 RNA polymerase Rpb1, domain 4 amad1_18530 PF04998 RNA polymerase Rpb1, domain 5 amad1_18535 PF04561 RNA polymerase Rpb2, domain 2 amad1_18535 PF04565 RNA polymerase Rpb2, domain 3 amad1_18535 PF10385 RNA polymerase beta subunit external 1 domain amad1_18535 PF00562 RNA polymerase Rpb2, domain 6 amad1_18535 PF04563 RNA polymerase beta subunit amad1_18535 PF04560 RNA polymerase Rpb2, domain 7 amad1_18540 PF00542 Ribosomal protein L7/L12 C-terminal domain amad1_18540 PF16320 Ribosomal protein L7/L12 dimerisation domain amad1_18545 PF00466 Ribosomal protein L10 amad1_18550 PF00687 Ribosomal protein L1p/L10e family amad1_18555 PF03946 Ribosomal protein L11, N-terminal domain amad1_18555 PF00298 Ribosomal protein L11, RNA binding domain amad1_18575 PF00467 KOW motif amad1_18575 PF02357 Transcription termination factor nusG amad1_18580 PF00584 SecE/Sec61-gamma subunits of protein translocation complex amad1_18585 PF00005 ABC transporter amad1_18585 PF00664 ABC transporter transmembrane region amad1_18590 PF03737 Aldolase/RraA amad1_18595 PF05649 Peptidase family M13 amad1_18595 PF01431 Peptidase family M13 amad1_18605 PF03880 DbpA RNA binding domain amad1_18605 PF00271 Helicase conserved C-terminal domain amad1_18605 PF00270 DEAD/DEAH box helicase amad1_18610 PF01979 Amidohydrolase family amad1_18615 PF08212 Lipocalin-like domain amad1_18620 PF00248 Aldo/keto reductase family amad1_18625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily amad1_18630 PF05552 Conserved TM helix amad1_18630 PF00924 Mechanosensitive ion channel amad1_18635 PF07690 Major Facilitator Superfamily amad1_18640 PF00128 Alpha amylase, catalytic domain amad1_18650 PF01227 GTP cyclohydrolase I amad1_18660 PF04371 Porphyromonas-type peptidyl-arginine deiminase amad1_18665 PF00795 Carbon-nitrogen hydrolase amad1_18680 PF08494 DEAD/H associated amad1_18680 PF00270 DEAD/DEAH box helicase amad1_18680 PF00271 Helicase conserved C-terminal domain amad1_18690 PF04675 DNA ligase N terminus amad1_18690 PF01068 ATP dependent DNA ligase domain amad1_18690 PF04679 ATP dependent DNA ligase C terminal region amad1_18695 PF01132 Elongation factor P (EF-P) OB domain amad1_18695 PF08207 Elongation factor P (EF-P) KOW-like domain amad1_18695 PF09285 Elongation factor P, C-terminal amad1_18700 PF00294 pfkB family carbohydrate kinase amad1_18710 PF02574 Homocysteine S-methyltransferase amad1_18710 PF00809 Pterin binding enzyme amad1_18710 PF02965 Vitamin B12 dependent methionine synthase, activation domain amad1_18710 PF02607 B12 binding domain amad1_18710 PF02310 B12 binding domain amad1_18715 PF02798 Glutathione S-transferase, N-terminal domain amad1_18715 PF00043 Glutathione S-transferase, C-terminal domain amad1_18720 PF02798 Glutathione S-transferase, N-terminal domain amad1_18730 PF00561 alpha/beta hydrolase fold amad1_18745 PF00171 Aldehyde dehydrogenase family amad1_18750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain amad1_18750 PF00205 Thiamine pyrophosphate enzyme, central domain amad1_18750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain amad1_18760 PF00762 Ferrochelatase amad1_18765 PF03806 AbgT putative transporter family amad1_18770 PF01145 SPFH domain / Band 7 family amad1_18775 PF01145 SPFH domain / Band 7 family amad1_18775 PF12221 Bacterial membrane protein N terminal amad1_18780 PF01926 50S ribosome-binding GTPase amad1_18780 PF13167 GTP-binding GTPase N-terminal amad1_18780 PF16360 GTP-binding GTPase Middle Region amad1_18785 PF17209 Hfq protein amad1_18795 PF08676 MutL C terminal dimerisation domain amad1_18795 PF01119 DNA mismatch repair protein, C-terminal domain amad1_18800 PF01520 N-acetylmuramoyl-L-alanine amidase amad1_18805 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE amad1_18810 PF01256 Carbohydrate kinase amad1_18810 PF03853 YjeF-related protein N-terminus amad1_18815 PF08331 Domain of unknown function (DUF1730) amad1_18825 PF01208 Uroporphyrinogen decarboxylase (URO-D) amad1_18830 PF09297 NADH pyrophosphatase zinc ribbon domain amad1_18830 PF00293 NUDIX domain amad1_18835 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ amad1_18840 PF01475 Ferric uptake regulator family amad1_18850 PF01894 Uncharacterised protein family UPF0047 amad1_18855 PF05736 OprF membrane domain amad1_18855 PF00691 OmpA family amad1_18860 PF03796 DnaB-like helicase C terminal domain amad1_18860 PF00772 DnaB-like helicase N terminal domain amad1_18885 PF03473 MOSC domain amad1_18885 PF03475 3-alpha domain amad1_18900 PF03948 Ribosomal protein L9, C-terminal domain amad1_18900 PF01281 Ribosomal protein L9, N-terminal domain amad1_18905 PF01084 Ribosomal protein S18 amad1_18910 PF01250 Ribosomal protein S6 amad1_18915 PF07689 KaiB domain amad1_18915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_18915 PF00512 His Kinase A (phospho-acceptor) domain amad1_18925 PF00005 ABC transporter amad1_18925 PF02687 FtsX-like permease family amad1_18925 PF12704 MacB-like periplasmic core domain amad1_18935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain amad1_18935 PF08447 PAS fold amad1_18940 PF13426 PAS domain amad1_18940 PF13188 PAS domain amad1_18940 PF00989 PAS fold amad1_18940 PF00512 His Kinase A (phospho-acceptor) domain amad1_18940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_18945 PF13426 PAS domain amad1_18945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain amad1_18945 PF08447 PAS fold amad1_18955 PF01545 Cation efflux family amad1_18955 PF16916 Dimerisation domain of Zinc Transporter amad1_18980 PF01915 Glycosyl hydrolase family 3 C-terminal domain amad1_18980 PF14310 Fibronectin type III-like domain amad1_18980 PF00933 Glycosyl hydrolase family 3 N terminal domain amad1_18985 PF07690 Major Facilitator Superfamily amad1_18990 PF00232 Glycosyl hydrolase family 1 amad1_18995 PF00356 Bacterial regulatory proteins, lacI family amad1_19000 PF00083 Sugar (and other) transporter amad1_19005 PF13474 SnoaL-like domain amad1_19015 PF00990 Diguanylate cyclase, GGDEF domain amad1_19015 PF17151 Periplasmic sensor domain amad1_19025 PF04954 Siderophore-interacting protein amad1_19025 PF08021 Siderophore-interacting FAD-binding domain amad1_19030 PF05532 CsbD-like amad1_19055 PF00472 RF-1 domain amad1_19060 PF00561 alpha/beta hydrolase fold amad1_19060 PF00364 Biotin-requiring enzyme amad1_19080 PF01292 Prokaryotic cytochrome b561 amad1_19085 PF04264 YceI-like domain amad1_19090 PF07992 Pyridine nucleotide-disulphide oxidoreductase amad1_19095 PF00593 TonB dependent receptor amad1_19095 PF07715 TonB-dependent Receptor Plug Domain amad1_19105 PF03466 LysR substrate binding domain amad1_19105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_19110 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) amad1_19115 PF16884 N-terminal domain of oxidoreductase amad1_19115 PF00107 Zinc-binding dehydrogenase amad1_19120 PF00360 Phytochrome region amad1_19120 PF00990 Diguanylate cyclase, GGDEF domain amad1_19120 PF01590 GAF domain amad1_19120 PF00563 EAL domain amad1_19125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_19125 PF00512 His Kinase A (phospho-acceptor) domain amad1_19125 PF09308 LuxQ, periplasmic amad1_19125 PF00072 Response regulator receiver domain amad1_19135 PF00296 Luciferase-like monooxygenase amad1_19140 PF01380 SIS domain amad1_19145 PF00455 DeoR C terminal sensor domain amad1_19145 PF08220 DeoR-like helix-turn-helix domain amad1_19150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain amad1_19150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold amad1_19155 PF00132 Bacterial transferase hexapeptide (six repeats) amad1_19155 PF14602 Hexapeptide repeat of succinyl-transferase amad1_19155 PF12804 MobA-like NTP transferase domain amad1_19165 PF00892 EamA-like transporter family amad1_19170 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain amad1_19170 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain amad1_19175 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain amad1_19175 PF00730 HhH-GPD superfamily base excision DNA repair protein amad1_19180 PF00144 Beta-lactamase amad1_19185 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain amad1_19185 PF17944 Arginine decarboxylase C-terminal helical extension amad1_19185 PF17810 Arginine decarboxylase helical bundle domain amad1_19195 PF02233 NAD(P) transhydrogenase beta subunit amad1_19200 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch amad1_19205 PF05222 Alanine dehydrogenase/PNT, N-terminal domain amad1_19205 PF01262 Alanine dehydrogenase/PNT, C-terminal domain amad1_19245 PF00593 TonB dependent receptor amad1_19245 PF07715 TonB-dependent Receptor Plug Domain amad1_19280 PF01040 UbiA prenyltransferase family amad1_19285 PF03626 Prokaryotic Cytochrome C oxidase subunit IV amad1_19290 PF00510 Cytochrome c oxidase subunit III amad1_19295 PF00115 Cytochrome C and Quinol oxidase polypeptide I amad1_19300 PF06481 COX Aromatic Rich Motif amad1_19300 PF00116 Cytochrome C oxidase subunit II, periplasmic domain amad1_19310 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin amad1_19315 PF01850 PIN domain amad1_19335 PF00118 TCP-1/cpn60 chaperonin family amad1_19340 PF00166 Chaperonin 10 Kd subunit amad1_19345 PF04186 FxsA cytoplasmic membrane protein amad1_19350 PF03091 CutA1 divalent ion tolerance protein amad1_19355 PF02683 Cytochrome C biogenesis protein transmembrane region amad1_19355 PF11412 Disulphide bond corrector protein DsbC amad1_19360 PF01551 Peptidase family M23 amad1_19365 PF01220 Dehydroquinase class II amad1_19370 PF00364 Biotin-requiring enzyme amad1_19375 PF02785 Biotin carboxylase C-terminal domain amad1_19375 PF00289 Biotin carboxylase, N-terminal domain amad1_19375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain amad1_19400 PF02811 PHP domain amad1_19400 PF07733 Bacterial DNA polymerase III alpha NTPase domain amad1_19400 PF17657 Bacterial DNA polymerase III alpha subunit finger domain amad1_19400 PF14579 Helix-hairpin-helix motif amad1_19400 PF11490 DNA polymerase III polC-type N-terminus II amad1_19400 PF00929 Exonuclease amad1_19420 PF01355 High potential iron-sulfur protein amad1_19425 PF01425 Amidase amad1_19440 PF01207 Dihydrouridine synthase (Dus) amad1_19445 PF02954 Bacterial regulatory protein, Fis family amad1_19450 PF01808 AICARFT/IMPCHase bienzyme amad1_19450 PF02142 MGS-like domain amad1_19460 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain amad1_19460 PF02843 Phosphoribosylglycinamide synthetase, C domain amad1_19460 PF02844 Phosphoribosylglycinamide synthetase, N domain amad1_19475 PF00520 Ion transport protein amad1_19475 PF00027 Cyclic nucleotide-binding domain amad1_19480 PF00485 Phosphoribulokinase / Uridine kinase family amad1_19490 PF00072 Response regulator receiver domain amad1_19490 PF00486 Transcriptional regulatory protein, C terminal amad1_19500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase amad1_19500 PF00672 HAMP domain amad1_19500 PF00512 His Kinase A (phospho-acceptor) domain amad1_19510 PF01055 Glycosyl hydrolases family 31 amad1_19510 PF13802 Galactose mutarotase-like amad1_19510 PF17137 Domain of unknown function (DUF5110) amad1_19510 PF16338 Domain of unknown function (DUF4968) amad1_19525 PF01430 Hsp33 protein amad1_19530 PF01479 S4 domain amad1_19535 PF11356 Type II secretion system protein C amad1_19540 PF00263 Bacterial type II and III secretion system protein amad1_19540 PF03958 Bacterial type II/III secretion system short domain amad1_19545 PF00437 Type II/IV secretion system protein amad1_19550 PF00482 Type II secretion system (T2SS), protein F amad1_19555 PF07963 Prokaryotic N-terminal methylation motif amad1_19555 PF08334 Type II secretion system (T2SS), protein G amad1_19560 PF12019 Type II transport protein GspH amad1_19565 PF07963 Prokaryotic N-terminal methylation motif amad1_19565 PF02501 Type II secretion system (T2SS), protein I amad1_19570 PF11612 Type II secretion system (T2SS), protein J amad1_19570 PF07963 Prokaryotic N-terminal methylation motif amad1_19580 PF05134 Type II secretion system (T2SS), protein L amad1_19580 PF12693 GspL periplasmic domain amad1_19585 PF04612 Type II secretion system (T2SS), protein M amad1_19600 PF00171 Aldehyde dehydrogenase family amad1_19605 PF01931 Protein of unknown function DUF84 amad1_19610 PF13419 Haloacid dehalogenase-like hydrolase amad1_19615 PF00293 NUDIX domain amad1_19620 PF00459 Inositol monophosphatase family amad1_19635 PF04349 Periplasmic glucan biosynthesis protein, MdoG amad1_19645 PF06794 Uncharacterised protein family (UPF0270) amad1_19650 PF00561 alpha/beta hydrolase fold amad1_19660 PF00005 ABC transporter amad1_19660 PF12848 ABC transporter amad1_19680 PF04102 SlyX amad1_19690 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase amad1_19690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase amad1_19700 PF03449 Transcription elongation factor, N-terminal amad1_19700 PF01272 Transcription elongation factor, GreA/GreB, C-term amad1_19705 PF00575 S1 RNA binding domain amad1_19705 PF17674 HHH domain amad1_19705 PF16921 Tex protein YqgF-like domain amad1_19705 PF09371 Tex-like protein N-terminal domain amad1_19710 PF04820 Tryptophan halogenase amad1_19735 PF12833 Helix-turn-helix domain amad1_19745 PF04616 Glycosyl hydrolases family 43 amad1_19755 PF03422 Carbohydrate binding module (family 6) amad1_19755 PF00553 Cellulose binding domain amad1_19755 PF00331 Glycosyl hydrolase family 10 amad1_19760 PF00248 Aldo/keto reductase family amad1_19765 PF02779 Transketolase, pyrimidine binding domain amad1_19765 PF00456 Transketolase, thiamine diphosphate binding domain amad1_19765 PF02780 Transketolase, C-terminal domain amad1_19775 PF00370 FGGY family of carbohydrate kinases, N-terminal domain amad1_19775 PF02782 FGGY family of carbohydrate kinases, C-terminal domain amad1_19780 PF00923 Transaldolase/Fructose-6-phosphate aldolase amad1_19790 PF14310 Fibronectin type III-like domain amad1_19790 PF00933 Glycosyl hydrolase family 3 N terminal domain amad1_19790 PF01915 Glycosyl hydrolase family 3 C-terminal domain amad1_19795 PF00083 Sugar (and other) transporter amad1_19810 PF00457 Glycosyl hydrolases family 11 amad1_19815 PF06964 Alpha-L-arabinofuranosidase C-terminal domain amad1_19840 PF00561 alpha/beta hydrolase fold amad1_19845 PF00156 Phosphoribosyl transferase domain amad1_19855 PF01106 NifU-like domain amad1_19855 PF01521 Iron-sulphur cluster biosynthesis amad1_19865 PF01177 Asp/Glu/Hydantoin racemase amad1_19875 PF01554 MatE amad1_19890 PF02630 SCO1/SenC amad1_19895 PF01040 UbiA prenyltransferase family amad1_19900 PF02628 Cytochrome oxidase assembly protein amad1_19920 PF00510 Cytochrome c oxidase subunit III amad1_19925 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 amad1_19930 PF00115 Cytochrome C and Quinol oxidase polypeptide I amad1_19935 PF02790 Cytochrome C oxidase subunit II, transmembrane domain amad1_19935 PF00116 Cytochrome C oxidase subunit II, periplasmic domain amad1_19945 PF00717 Peptidase S24-like amad1_19945 PF01726 LexA DNA binding domain amad1_19950 PF01553 Acyltransferase amad1_19955 PF00291 Pyridoxal-phosphate dependent enzyme amad1_19955 PF00585 C-terminal regulatory domain of Threonine dehydratase amad1_19960 PF00920 Dehydratase family amad1_19965 PF03458 UPF0126 domain amad1_19970 PF01078 Magnesium chelatase, subunit ChlI amad1_19970 PF13335 Magnesium chelatase, subunit ChlI C-terminal amad1_19975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family amad1_19975 PF03466 LysR substrate binding domain amad1_19980 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain amad1_19980 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain amad1_19985 PF07690 Major Facilitator Superfamily amad1_19995 PF07244 Surface antigen variable number repeat amad1_19995 PF01103 Surface antigen amad1_19995 PF17243 POTRA domain TamA domain 1 amad1_20000 PF04357 TamB, inner membrane protein subunit of TAM complex amad1_20025 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain amad1_20025 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain amad1_20035 PF00696 Amino acid kinase family amad1_20035 PF01472 PUA domain amad1_20055 PF03109 ABC1 family amad1_20080 PF01979 Amidohydrolase family amad1_20105 PF01206 Sulfurtransferase TusA amad1_20110 PF00156 Phosphoribosyl transferase domain amad1_20115 PF03725 3' exoribonuclease family, domain 2 amad1_20115 PF01138 3' exoribonuclease family, domain 1 amad1_20125 PF08340 Domain of unknown function (DUF1732) amad1_20125 PF03755 YicC-like family, N-terminal region amad1_20135 PF13657 HipA N-terminal domain amad1_20135 PF07804 HipA-like C-terminal domain amad1_20140 PF01381 Helix-turn-helix amad1_20175 PF12161 HsdM N-terminal domain amad1_20175 PF02384 N-6 DNA Methylase amad1_20180 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) amad1_20180 PF00271 Helicase conserved C-terminal domain amad1_20180 PF08463 EcoEI R protein C-terminal amad1_20180 PF04851 Type III restriction enzyme, res subunit amad1_20205 PF13411 MerR HTH family regulatory protein amad1_20210 PF01609 Transposase DDE domain amad1_20210 PF13808 DDE_Tnp_1-associated amad1_20215 PF00884 Sulfatase amad1_20215 PF16385 Domain of unknown function amad1_20220 PF07726 ATPase family associated with various cellular activities (AAA) amad1_20220 PF17863 AAA lid domain amad1_20235 PF13519 von Willebrand factor type A domain amad1_20255 PF00732 GMC oxidoreductase amad1_20255 PF05199 GMC oxidoreductase amad1_20260 PF00171 Aldehyde dehydrogenase family amad1_20265 PF13193 AMP-binding enzyme C-terminal domain amad1_20265 PF00501 AMP-binding enzyme amad1_20270 PF02515 CoA-transferase family III amad1_20275 PF00106 short chain dehydrogenase amad1_20280 PF02770 Acyl-CoA dehydrogenase, middle domain amad1_20280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain amad1_20280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain amad1_20285 PF00108 Thiolase, N-terminal domain amad1_20285 PF02803 Thiolase, C-terminal domain amad1_20290 PF00378 Enoyl-CoA hydratase/isomerase amad1_20295 PF12833 Helix-turn-helix domain amad1_20295 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term amad1_20300 PF13276 HTH-like domain amad1_20300 PF00665 Integrase core domain amad1_20300 PF13333 Integrase core domain amad1_20305 PF01527 Transposase amad1_20310 PF01081 KDPG and KHG aldolase amad1_20315 PF02685 Glucokinase amad1_20320 PF00920 Dehydratase family amad1_20325 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase amad1_20330 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain amad1_20330 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain amad1_20335 PF01418 Helix-turn-helix domain, rpiR family amad1_20335 PF01380 SIS domain amad1_20340 PF02887 Pyruvate kinase, alpha/beta domain amad1_20340 PF00224 Pyruvate kinase, barrel domain amad1_20370 PF02661 Fic/DOC family amad1_20370 PF13784 Fic/DOC family N-terminal amad1_20380 PF00356 Bacterial regulatory proteins, lacI family amad1_20390 PF00691 OmpA family amad1_20390 PF05736 OprF membrane domain amad1_20395 PF01966 HD domain amad1_20410 PF02798 Glutathione S-transferase, N-terminal domain amad1_20410 PF00043 Glutathione S-transferase, C-terminal domain amad1_20420 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain amad1_20420 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain amad1_20425 PF02874 ATP synthase alpha/beta family, beta-barrel domain amad1_20425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain amad1_20430 PF00231 ATP synthase amad1_20435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain amad1_20435 PF00306 ATP synthase alpha/beta chain, C terminal domain amad1_20435 PF02874 ATP synthase alpha/beta family, beta-barrel domain amad1_20440 PF00213 ATP synthase delta (OSCP) subunit amad1_20445 PF00430 ATP synthase B/B' CF(0) amad1_20450 PF00137 ATP synthase subunit C amad1_20455 PF00119 ATP synthase A chain amad1_20465 PF17762 HTH domain found in ParB protein amad1_20465 PF02195 ParB-like nuclease domain amad1_20470 PF13614 AAA domain amad1_20475 PF02527 rRNA small subunit methyltransferase G amad1_20480 PF01134 Glucose inhibited division protein A amad1_20480 PF13932 GidA associated domain amad1_20495 PF00258 Flavodoxin amad1_20500 PF10396 GTP-binding protein TrmE N-terminus amad1_20500 PF01926 50S ribosome-binding GTPase amad1_20500 PF12631 MnmE helical domain amad1_20505 PF04461 Protein of unknown function (DUF520) amad1_20510 PF14849 YidC periplasmic domain amad1_20510 PF02096 60Kd inner membrane protein amad1_20515 PF01809 Putative membrane protein insertion efficiency factor amad1_20520 PF00825 Ribonuclease P amad1_20923 PF13340 Putative transposase of IS4/5 family (DUF4096) amad1_21038 PF00437 Type II/IV secretion system protein amad1_21218 PF00589 Phage integrase family amad1_21238 PF00005 ABC transporter amad1_21238 PF00664 ABC transporter transmembrane region amad1_21258 PF13333 Integrase core domain amad1_21258 PF00665 Integrase core domain amad1_21258 PF13276 HTH-like domain amad1_21303 PF11799 impB/mucB/samB family C-terminal domain amad1_21303 PF00817 impB/mucB/samB family amad1_21303 PF13438 Domain of unknown function (DUF4113) amad1_21338 PF00072 Response regulator receiver domain amad1_21338 PF01339 CheB methylesterase amad1_21363 PF02796 Helix-turn-helix domain of resolvase amad1_21363 PF00239 Resolvase, N terminal domain amad1_21368 PF01526 Tn3 transposase DDE domain amad1_21368 PF13700 Domain of unknown function (DUF4158) amad1_21378 PF07693 KAP family P-loop domain amad1_21418 PF03527 RHS protein amad1_21418 PF05593 RHS Repeat amad1_21428 PF05593 RHS Repeat amad1_21428 PF03527 RHS protein amad1_21533 PF00975 Thioesterase domain amad1_21543 PF13193 AMP-binding enzyme C-terminal domain amad1_21543 PF00668 Condensation domain amad1_21543 PF07993 Male sterility protein amad1_21543 PF00550 Phosphopantetheine attachment site amad1_21543 PF00501 AMP-binding enzyme amad1_21548 PF00501 AMP-binding enzyme amad1_21548 PF13193 AMP-binding enzyme C-terminal domain amad1_21548 PF00668 Condensation domain amad1_21548 PF00550 Phosphopantetheine attachment site amad1_21548 PF00975 Thioesterase domain amad1_21553 PF16653 Saccharopine dehydrogenase C-terminal domain amad1_21553 PF03435 Saccharopine dehydrogenase NADP binding domain amad1_21558 PF00005 ABC transporter amad1_21558 PF00664 ABC transporter transmembrane region amad1_21563 PF01804 Penicillin amidase amad1_21578 PF03621 MbtH-like protein amad1_21583 PF00501 AMP-binding enzyme amad1_21583 PF13193 AMP-binding enzyme C-terminal domain amad1_21583 PF00668 Condensation domain amad1_21583 PF00550 Phosphopantetheine attachment site amad1_21598 PF00668 Condensation domain amad1_21598 PF00501 AMP-binding enzyme amad1_21598 PF13193 AMP-binding enzyme C-terminal domain amad1_21598 PF07993 Male sterility protein amad1_21598 PF00550 Phosphopantetheine attachment site amad1_21608 PF00501 AMP-binding enzyme amad1_21608 PF13193 AMP-binding enzyme C-terminal domain amad1_21608 PF00668 Condensation domain amad1_21608 PF00550 Phosphopantetheine attachment site amad1_21613 PF00550 Phosphopantetheine attachment site amad1_21613 PF00109 Beta-ketoacyl synthase, N-terminal domain amad1_21613 PF16197 Ketoacyl-synthetase C-terminal extension amad1_21613 PF00668 Condensation domain amad1_21613 PF00698 Acyl transferase domain amad1_21613 PF02801 Beta-ketoacyl synthase, C-terminal domain amad1_21618 PF00501 AMP-binding enzyme amad1_21618 PF13193 AMP-binding enzyme C-terminal domain amad1_21618 PF00550 Phosphopantetheine attachment site amad1_21618 PF00668 Condensation domain amad1_21618 PF07993 Male sterility protein amad1_21623 PF00975 Thioesterase domain amad1_21623 PF00668 Condensation domain amad1_21623 PF13193 AMP-binding enzyme C-terminal domain amad1_21623 PF00501 AMP-binding enzyme amad1_21623 PF00550 Phosphopantetheine attachment site amad1_21643 PF00501 AMP-binding enzyme amad1_21643 PF13193 AMP-binding enzyme C-terminal domain amad1_21643 PF00668 Condensation domain amad1_21643 PF00550 Phosphopantetheine attachment site amad1_21643 PF07993 Male sterility protein amad1_21648 PF00550 Phosphopantetheine attachment site amad1_21648 PF00668 Condensation domain amad1_21648 PF13193 AMP-binding enzyme C-terminal domain amad1_21648 PF00501 AMP-binding enzyme amad1_21653 PF00668 Condensation domain amad1_21653 PF00975 Thioesterase domain amad1_21653 PF13193 AMP-binding enzyme C-terminal domain amad1_21653 PF00550 Phosphopantetheine attachment site amad1_21653 PF00501 AMP-binding enzyme amad1_21678 PF13401 AAA domain amad1_21678 PF11426 Tn7 transposition regulator TnsC amad1_21683 PF00665 Integrase core domain amad1_21688 PF08722 TnsA endonuclease N terminal amad1_21688 PF08721 TnsA endonuclease C terminal amad1_21743 PF00580 UvrD/REP helicase N-terminal domain amad1_21743 PF13361 UvrD-like helicase C-terminal domain amad1_21783 PF00437 Type II/IV secretion system protein amad1_21813 PF00665 Integrase core domain amad1_21873 PF13340 Putative transposase of IS4/5 family (DUF4096) amad1_21953 PF00665 Integrase core domain amad1_21958 PF01695 IstB-like ATP binding protein amad1_21973 PF00990 Diguanylate cyclase, GGDEF domain amad1_21973 PF03707 Bacterial signalling protein N terminal repeat amad1_21973 PF00563 EAL domain amad1_21988 PF00990 Diguanylate cyclase, GGDEF domain amad1_21988 PF08448 PAS fold amad1_22073 PF13614 AAA domain