amad1_00010 SM00382 ATPases associated with a variety of cellular activities amad1_00010 SM00760 Bacterial dnaA protein helix-turn-helix domain amad1_00015 SM00480 DNA polymerase III beta subunit amad1_00025 SM00387 Histidine kinase-like ATPases amad1_00025 SM00433 TopoisomeraseII amad1_00035 SM00836 DALR anticodon binding domain amad1_00075 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs amad1_00075 SM00474 3'-5' exonuclease amad1_00075 SM00475 5'-3' exonuclease amad1_00075 SM00482 DNA polymerase A domain amad1_00110 SM00257 Lysin motif amad1_00185 SM00481 DNA polymerase alpha chain like domain amad1_00275 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain amad1_00275 SM01232 amad1_00275 amad1_00305 SM00052 Putative diguanylate phosphodiesterase amad1_00305 SM00267 diguanylate cyclase amad1_00315 SM00829 Enoylreductase amad1_00320 SM00450 Rhodanese Homology Domain amad1_00350 SM00530 Helix-turn-helix XRE-family like proteins amad1_00365 SM00052 Putative diguanylate phosphodiesterase amad1_00365 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. amad1_00365 SM00267 diguanylate cyclase amad1_00380 SM00530 Helix-turn-helix XRE-family like proteins amad1_00415 SM00849 Metallo-beta-lactamase superfamily amad1_00440 SM00382 ATPases associated with a variety of cellular activities amad1_00445 SM00382 ATPases associated with a variety of cellular activities amad1_00465 SM00450 Rhodanese Homology Domain amad1_00470 SM00849 Metallo-beta-lactamase superfamily amad1_00490 SM00421 helix_turn_helix, Lux Regulon amad1_00550 SM00490 helicase superfamily c-terminal domain amad1_00565 SM00487 DEAD-like helicases superfamily amad1_00580 SM00382 ATPases associated with a variety of cellular activities amad1_00610 SM00849 Metallo-beta-lactamase superfamily amad1_00640 SM00876 Biotin and Thiamin Synthesis associated domain amad1_00690 SM00267 diguanylate cyclase amad1_00705 SM00072 Guanylate kinase homologues. amad1_00710 SM01409 amad1_00710 amad1_00715 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. amad1_00715 SM00954 Region found in RelA / SpoT proteins amad1_00730 SM00487 DEAD-like helicases superfamily amad1_00730 SM00490 helicase superfamily c-terminal domain amad1_00765 SM00382 ATPases associated with a variety of cellular activities amad1_00830 SM00422 helix_turn_helix, mercury resistance amad1_00855 SM00052 Putative diguanylate phosphodiesterase amad1_00855 SM01034 Sensors of blue-light using FAD amad1_00880 SM00271 DnaJ molecular chaperone homology domain amad1_00920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). amad1_00940 SM00052 Putative diguanylate phosphodiesterase amad1_00940 SM00267 diguanylate cyclase amad1_00955 SM00341 Helicase and RNase D C-terminal amad1_00955 SM00487 DEAD-like helicases superfamily amad1_00955 SM00490 helicase superfamily c-terminal domain amad1_00955 SM00956 amad1_00955 amad1_00960 SM00924 MgtE intracellular N domain amad1_00970 SM00267 diguanylate cyclase amad1_00970 SM00448 cheY-homologous receiver domain amad1_00980 SM00971 Serine acetyltransferase, N-terminal amad1_01020 SM00014 Acid phosphatase homologues amad1_01060 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. amad1_01110 SM00354 helix_turn _helix lactose operon repressor amad1_01175 SM00420 helix_turn_helix, Deoxyribose operon repressor amad1_01175 SM01134 amad1_01175 amad1_01230 SM00028 Tetratricopeptide repeats amad1_01235 SM00382 ATPases associated with a variety of cellular activities amad1_01305 SM00316 Ribosomal protein S1-like RNA-binding domain amad1_01335 SM01038 Beta galactosidase small chain amad1_01340 SM00448 cheY-homologous receiver domain amad1_01340 SM00862 Transcriptional regulatory protein, C terminal amad1_01345 SM00387 Histidine kinase-like ATPases amad1_01370 SM00478 endonuclease III amad1_01370 SM00525 amad1_01370 amad1_01390 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain amad1_01390 SM00387 Histidine kinase-like ATPases amad1_01390 SM00388 His Kinase A (phosphoacceptor) domain amad1_01395 SM00448 cheY-homologous receiver domain amad1_01395 SM00862 Transcriptional regulatory protein, C terminal amad1_01570 SM00422 helix_turn_helix, mercury resistance amad1_01690 SM00448 cheY-homologous receiver domain amad1_01690 SM00862 Transcriptional regulatory protein, C terminal amad1_01695 SM00387 Histidine kinase-like ATPases amad1_01735 SM00422 helix_turn_helix, mercury resistance amad1_01880 SM00354 helix_turn _helix lactose operon repressor amad1_01895 SM00267 diguanylate cyclase amad1_01915 SM00342 helix_turn_helix, arabinose operon control protein amad1_01915 SM00387 Histidine kinase-like ATPases amad1_01915 SM00388 His Kinase A (phosphoacceptor) domain amad1_01915 SM00448 cheY-homologous receiver domain amad1_01930 SM00354 helix_turn _helix lactose operon repressor amad1_01980 SM00855 Phosphoglycerate mutase family amad1_01995 SM00671 Sel1-like repeats. amad1_02000 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. amad1_02000 SM00382 ATPases associated with a variety of cellular activities amad1_02005 SM01403 amad1_02005 amad1_02025 SM01382 amad1_02025 amad1_02025 SM01383 amad1_02025 amad1_02040 SM00322 K homology RNA-binding domain amad1_02090 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). amad1_02090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain amad1_02115 SM00487 DEAD-like helicases superfamily amad1_02115 SM00490 helicase superfamily c-terminal domain amad1_02145 SM00342 helix_turn_helix, arabinose operon control protein amad1_02155 SM00938 Nitrogen regulatory protein P-II amad1_02175 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain amad1_02210 SM00073 Histidine Phosphotransfer domain amad1_02210 SM00387 Histidine kinase-like ATPases amad1_02210 SM00388 His Kinase A (phosphoacceptor) domain amad1_02210 SM00448 cheY-homologous receiver domain amad1_02215 SM00434 DNA Topoisomerase IV amad1_02225 SM00052 Putative diguanylate phosphodiesterase amad1_02225 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) amad1_02225 SM00091 PAS domain amad1_02225 SM00267 diguanylate cyclase amad1_02230 SM01150 amad1_02230 amad1_02305 SM00965 Secretin and TonB N terminus short domain amad1_02325 SM00842 Cell division protein FtsA amad1_02335 SM00919 Malic enzyme, NAD binding domain amad1_02335 SM01274 amad1_02335 amad1_02360 SM01060 amad1_02360 amad1_02375 SM00052 Putative diguanylate phosphodiesterase amad1_02410 SM00859 Semialdehyde dehydrogenase, NAD binding domain amad1_02415 SM00851 MGS-like domain amad1_02425 SM00448 cheY-homologous receiver domain amad1_02425 SM00862 Transcriptional regulatory protein, C terminal amad1_02430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain amad1_02430 SM00387 Histidine kinase-like ATPases amad1_02430 SM00388 His Kinase A (phosphoacceptor) domain amad1_02465 SM00450 Rhodanese Homology Domain amad1_02505 SM00479 amad1_02505 amad1_02570 SM00267 diguanylate cyclase amad1_02575 SM01004 Delta-aminolevulinic acid dehydratase amad1_02585 SM00487 DEAD-like helicases superfamily amad1_02585 SM00490 helicase superfamily c-terminal domain amad1_02595 SM00357 Cold shock protein domain amad1_02595 SM00382 ATPases associated with a variety of cellular activities amad1_02595 SM00959 Rho termination factor, N-terminal domain amad1_02605 SM00387 Histidine kinase-like ATPases amad1_02605 SM00388 His Kinase A (phosphoacceptor) domain amad1_02605 SM00448 cheY-homologous receiver domain amad1_02615 SM01001 AIR carboxylase amad1_02670 SM00788 Adenylosuccinate synthetase amad1_02720 SM01005 Alanine racemase, C-terminal domain amad1_02745 SM00062 Bacterial periplasmic substrate-binding proteins amad1_02775 SM00670 Large family of predicted nucleotide-binding domains amad1_02795 SM00530 Helix-turn-helix XRE-family like proteins amad1_02910 SM00490 helicase superfamily c-terminal domain amad1_02990 SM00257 Lysin motif amad1_03030 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). amad1_03030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain amad1_03030 SM01049 amad1_03030 amad1_03050 SM00287 Bacterial SH3 domain homologues amad1_03055 SM01118 amad1_03055 amad1_03065 SM00927 DNA mismatch repair enzyme MutH amad1_03075 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. amad1_03095 SM00448 cheY-homologous receiver domain amad1_03100 SM00267 diguanylate cyclase amad1_03125 SM00487 DEAD-like helicases superfamily amad1_03125 SM00490 helicase superfamily c-terminal domain amad1_03140 SM00670 Large family of predicted nucleotide-binding domains amad1_03155 SM00487 DEAD-like helicases superfamily amad1_03155 SM00490 helicase superfamily c-terminal domain amad1_03160 SM00028 Tetratricopeptide repeats amad1_03200 SM00387 Histidine kinase-like ATPases amad1_03200 SM00433 TopoisomeraseII amad1_03240 SM00841 Elongation factor P, C-terminal amad1_03240 SM01185 amad1_03240 amad1_03295 SM00014 Acid phosphatase homologues amad1_03310 SM01012 amad1_03310 amad1_03335 SM00926 Molybdopterin oxidoreductase Fe4S4 domain amad1_03350 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) amad1_03350 SM00091 PAS domain amad1_03350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). amad1_03365 SM00382 ATPases associated with a variety of cellular activities amad1_03425 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain amad1_03430 SM01007 Class II Aldolase and Adducin N-terminal domain amad1_03460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). amad1_03460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain amad1_03470 SM00400 zinc finger amad1_03470 SM00493 amad1_03470 amad1_03470 SM00766 DNA primase DnaG DnaB-binding amad1_03500 SM01207 amad1_03500 amad1_03505 SM00905 Dihydroneopterin aldolase amad1_03540 SM00530 Helix-turn-helix XRE-family like proteins amad1_03550 SM00387 Histidine kinase-like ATPases amad1_03555 SM00448 cheY-homologous receiver domain amad1_03555 SM00862 Transcriptional regulatory protein, C terminal amad1_03560 SM00387 Histidine kinase-like ATPases amad1_03560 SM00388 His Kinase A (phosphoacceptor) domain amad1_03570 SM00710 Parallel beta-helix repeats amad1_03605 SM00028 Tetratricopeptide repeats amad1_03610 SM00448 cheY-homologous receiver domain amad1_03610 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. amad1_03615 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) amad1_03615 SM00091 PAS domain amad1_03615 SM00387 Histidine kinase-like ATPases amad1_03615 SM00388 His Kinase A (phosphoacceptor) domain amad1_03615 SM00448 cheY-homologous receiver domain amad1_03670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). amad1_03670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain amad1_03685 SM00650 Ribosomal RNA adenine dimethylases amad1_03705 SM00271 DnaJ molecular chaperone homology domain amad1_03750 SM00954 Region found in RelA / SpoT proteins amad1_03780 SM00822 amad1_03780 amad1_03785 SM01236 amad1_03785 amad1_03830 SM00387 Histidine kinase-like ATPases amad1_03830 SM00388 His Kinase A (phosphoacceptor) domain amad1_03835 SM00448 cheY-homologous receiver domain amad1_03835 SM00862 Transcriptional regulatory protein, C terminal amad1_03880 SM00116 Domain in cystathionine beta-synthase and other proteins. amad1_03880 SM00924 MgtE intracellular N domain amad1_03910 SM00382 ATPases associated with a variety of cellular activities amad1_03940 SM00382 ATPases associated with a variety of cellular activities amad1_03975 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. amad1_03980 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. amad1_04040 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) amad1_04040 SM00091 PAS domain amad1_04040 SM00387 Histidine kinase-like ATPases amad1_04040 SM00388 His Kinase A (phosphoacceptor) domain amad1_04040 SM00448 cheY-homologous receiver domain amad1_04065 SM00861 Transketolase, pyrimidine binding domain amad1_04070 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain amad1_04135 SM00382 ATPases associated with a variety of cellular activities amad1_04170 SM00347 helix_turn_helix multiple antibiotic resistance protein amad1_04180 SM01263 amad1_04180 amad1_04200 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) amad1_04200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). amad1_04245 SM00345 helix_turn_helix gluconate operon transcriptional repressor amad1_04245 SM00866 amad1_04245 amad1_04285 SM00382 ATPases associated with a variety of cellular activities amad1_04410 SM00382 ATPases associated with a variety of cellular activities amad1_04445 SM00487 DEAD-like helicases superfamily amad1_04480 SM00850 LytTr DNA-binding domain amad1_04495 SM00448 cheY-homologous receiver domain amad1_04500 SM00091 PAS domain amad1_04520 SM00729 Elongator protein 3, MiaB family, Radical SAM amad1_04530 SM00487 DEAD-like helicases superfamily amad1_04530 SM00490 helicase superfamily c-terminal domain amad1_04540 SM00382 ATPases associated with a variety of cellular activities amad1_04550 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. amad1_04565 SM01329 amad1_04565 amad1_04570 SM00917 LeuA allosteric (dimerisation) domain amad1_04580 SM01192 amad1_04580 amad1_04580 SM01193 amad1_04580 amad1_04590 SM00533 DNA-binding domain of DNA mismatch repair MUTS family amad1_04590 SM00534 ATPase domain of DNA mismatch repair MUTS family amad1_04600 SM00382 ATPases associated with a variety of cellular activities amad1_04605 SM00382 ATPases associated with a variety of cellular activities amad1_04625 SM00382 ATPases associated with a variety of cellular activities amad1_04695 SM00382 ATPases associated with a variety of cellular activities amad1_04735 SM00278 Helix-hairpin-helix DNA-binding motif class 1 amad1_04740 SM01329 amad1_04740 amad1_04760 SM00267 diguanylate cyclase amad1_04820 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. amad1_04865 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. amad1_04875 SM00935 Outer membrane protein (OmpH-like) amad1_04900 SM00481 DNA polymerase alpha chain like domain amad1_04910 SM00977 TilS substrate C-terminal domain amad1_04915 SM00267 diguanylate cyclase amad1_04940 SM00062 Bacterial periplasmic substrate-binding proteins amad1_04945 SM01211 amad1_04945 amad1_04995 SM00421 helix_turn_helix, Lux Regulon amad1_05030 SM00858 amad1_05030 amad1_05035 SM00260 Two component signalling adaptor domain amad1_05035 SM00448 cheY-homologous receiver domain amad1_05040 SM00138 Methyltransferase, chemotaxis proteins amad1_05085 SM00047 Lysozyme subfamily 2 amad1_05165 SM00858 amad1_05165 amad1_05180 SM00822 amad1_05180 amad1_05260 SM00382 ATPases associated with a variety of cellular activities amad1_05265 SM00387 Histidine kinase-like ATPases amad1_05265 SM00388 His Kinase A (phosphoacceptor) domain amad1_05270 SM00382 ATPases associated with a variety of cellular activities amad1_05270 SM00448 cheY-homologous receiver domain amad1_05295 SM00382 ATPases associated with a variety of cellular activities amad1_05355 SM00382 ATPases associated with a variety of cellular activities amad1_05355 SM00962 SRP54-type protein, GTPase domain amad1_05370 SM00448 cheY-homologous receiver domain amad1_05380 SM00073 Histidine Phosphotransfer domain amad1_05380 SM00260 Two component signalling adaptor domain amad1_05380 SM00387 Histidine kinase-like ATPases amad1_05380 SM01231 amad1_05380 amad1_05385 SM00448 cheY-homologous receiver domain amad1_05395 SM00260 Two component signalling adaptor domain amad1_05400 SM00260 Two component signalling adaptor domain amad1_05420 SM01018 B12 binding domain amad1_05445 SM00947 Carbonic anhydrase amad1_05480 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain amad1_05505 SM00382 ATPases associated with a variety of cellular activities amad1_05510 SM00382 ATPases associated with a variety of cellular activities amad1_05530 SM00382 ATPases associated with a variety of cellular activities amad1_05555 SM00091 PAS domain amad1_05555 SM00382 ATPases associated with a variety of cellular activities amad1_05570 SM00344 helix_turn_helix ASNC type amad1_05575 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase amad1_05610 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. amad1_05625 SM00028 Tetratricopeptide repeats amad1_05660 SM00028 Tetratricopeptide repeats amad1_05735 SM00829 Enoylreductase amad1_05750 SM00347 helix_turn_helix multiple antibiotic resistance protein amad1_05760 SM00530 Helix-turn-helix XRE-family like proteins amad1_05810 SM00479 amad1_05810 amad1_05840 SM00487 DEAD-like helicases superfamily amad1_05880 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. amad1_05945 SM00422 helix_turn_helix, mercury resistance amad1_05965 SM00422 helix_turn_helix, mercury resistance amad1_05970 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor amad1_06105 SM00382 ATPases associated with a variety of cellular activities amad1_06145 SM00382 ATPases associated with a variety of cellular activities amad1_06165 SM00327 von Willebrand factor (vWF) type A domain amad1_06180 SM00778 Zinc-binding domain of primase-helicase amad1_06250 SM00530 Helix-turn-helix XRE-family like proteins amad1_06260 SM00836 DALR anticodon binding domain amad1_06260 SM01016 Arginyl tRNA synthetase N terminal dom amad1_06290 SM00267 diguanylate cyclase amad1_06325 SM00937 amad1_06325 amad1_06380 SM00463 Small MutS-related domain amad1_06410 SM00763 PrkA AAA domain amad1_06440 SM00965 Secretin and TonB N terminus short domain amad1_06455 SM00479 amad1_06455 amad1_06475 SM00357 Cold shock protein domain amad1_06490 SM00478 endonuclease III amad1_06500 SM00900 amad1_06500 amad1_06535 SM00487 DEAD-like helicases superfamily amad1_06535 SM00490 helicase superfamily c-terminal domain amad1_06615 SM00267 diguanylate cyclase amad1_06640 SM00028 Tetratricopeptide repeats amad1_06645 SM00327 von Willebrand factor (vWF) type A domain amad1_06685 SM00052 Putative diguanylate phosphodiesterase amad1_06685 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) amad1_06685 SM00091 PAS domain amad1_06685 SM00267 diguanylate cyclase amad1_06695 SM00855 Phosphoglycerate mutase family amad1_06705 SM01091 Transporter associated domain amad1_06715 SM00382 ATPases associated with a variety of cellular activities amad1_06715 SM00962 SRP54-type protein, GTPase domain amad1_06715 SM00963 SRP54-type protein, helical bundle domain amad1_06765 SM00382 ATPases associated with a variety of cellular activities amad1_06815 SM00830 Chorismate mutase type II amad1_06820 SM00830 Chorismate mutase type II amad1_06825 SM00448 cheY-homologous receiver domain amad1_06840 SM00331 Sigma factor PP2C-like phosphatases amad1_06840 SM00448 cheY-homologous receiver domain amad1_06850 SM00052 Putative diguanylate phosphodiesterase amad1_06850 SM00267 diguanylate cyclase amad1_06860 SM00387 Histidine kinase-like ATPases amad1_06860 SM00388 His Kinase A (phosphoacceptor) domain amad1_06870 SM00382 ATPases associated with a variety of cellular activities amad1_06870 SM00448 cheY-homologous receiver domain amad1_06910 SM00278 Helix-hairpin-helix DNA-binding motif class 1 amad1_06915 SM00382 ATPases associated with a variety of cellular activities amad1_06980 SM00857 Resolvase, N terminal domain amad1_07010 SM00028 Tetratricopeptide repeats amad1_07010 SM00387 Histidine kinase-like ATPases amad1_07010 SM00388 His Kinase A (phosphoacceptor) domain amad1_07010 SM00448 cheY-homologous receiver domain amad1_07020 SM00859 Semialdehyde dehydrogenase, NAD binding domain amad1_07035 SM00267 diguanylate cyclase amad1_07060 SM00116 Domain in cystathionine beta-synthase and other proteins. amad1_07100 SM00267 diguanylate cyclase amad1_07170 SM00729 Elongator protein 3, MiaB family, Radical SAM amad1_07170 SM00876 Biotin and Thiamin Synthesis associated domain amad1_07195 SM00226 Low molecular weight phosphatase family amad1_07205 SM00382 ATPases associated with a variety of cellular activities amad1_07225 SM00382 ATPases associated with a variety of cellular activities amad1_07230 SM00729 Elongator protein 3, MiaB family, Radical SAM amad1_07240 SM00028 Tetratricopeptide repeats amad1_07240 SM00448 cheY-homologous receiver domain amad1_07285 SM00382 ATPases associated with a variety of cellular activities amad1_07300 SM00905 Dihydroneopterin aldolase amad1_07310 SM00387 Histidine kinase-like ATPases amad1_07315 SM00448 cheY-homologous receiver domain amad1_07315 SM00862 Transcriptional regulatory protein, C terminal amad1_07385 SM00363 S4 RNA-binding domain amad1_07395 SM01266 amad1_07395 amad1_07410 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins amad1_07420 SM00382 ATPases associated with a variety of cellular activities amad1_07485 SM00421 helix_turn_helix, Lux Regulon amad1_07485 SM00448 cheY-homologous receiver domain amad1_07490 SM00387 Histidine kinase-like ATPases amad1_07490 SM00388 His Kinase A (phosphoacceptor) domain amad1_07490 SM00448 cheY-homologous receiver domain amad1_07505 SM00271 DnaJ molecular chaperone homology domain amad1_07515 SM00052 Putative diguanylate phosphodiesterase amad1_07515 SM00091 PAS domain amad1_07515 SM00267 diguanylate cyclase amad1_07535 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain amad1_07540 SM00851 MGS-like domain amad1_07540 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain amad1_07590 SM00116 Domain in cystathionine beta-synthase and other proteins. amad1_07590 SM01091 Transporter associated domain amad1_07605 SM00729 Elongator protein 3, MiaB family, Radical SAM amad1_07660 SM00903 Flavin reductase like domain amad1_07700 SM00829 Enoylreductase amad1_07715 SM01400 amad1_07715 amad1_07735 SM00937 amad1_07735 amad1_07785 SM00838 Elongation factor G C-terminus amad1_07785 SM00889 Elongation factor G, domain IV amad1_07790 SM01116 amad1_07790 amad1_07800 SM00219 Tyrosine kinase, catalytic domain amad1_07800 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain amad1_07810 SM00460 Transglutaminase/protease-like homologues amad1_07840 SM00052 Putative diguanylate phosphodiesterase amad1_07840 SM00267 diguanylate cyclase amad1_07915 SM00347 helix_turn_helix multiple antibiotic resistance protein amad1_07925 SM00864 Tubulin/FtsZ family, GTPase domain amad1_07925 SM00865 Tubulin/FtsZ family, C-terminal domain amad1_07935 SM00052 Putative diguanylate phosphodiesterase amad1_07935 SM00091 PAS domain amad1_07935 SM00267 diguanylate cyclase amad1_07940 SM00052 Putative diguanylate phosphodiesterase amad1_07940 SM00267 diguanylate cyclase amad1_07970 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain amad1_07985 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) amad1_07985 SM00091 PAS domain amad1_07985 SM00267 diguanylate cyclase amad1_08015 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain amad1_08020 SM01092 CO dehydrogenase flavoprotein C-terminal domain amad1_08060 SM00448 cheY-homologous receiver domain amad1_08070 SM00267 diguanylate cyclase amad1_08075 SM00387 Histidine kinase-like ATPases amad1_08075 SM00388 His Kinase A (phosphoacceptor) domain amad1_08075 SM00448 cheY-homologous receiver domain amad1_08165 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain amad1_08235 SM00052 Putative diguanylate phosphodiesterase amad1_08235 SM00267 diguanylate cyclase amad1_08315 SM00873 B3/4 domain amad1_08315 SM00874 tRNA synthetase B5 domain amad1_08315 SM00896 Ferredoxin-fold anticodon binding domain amad1_08320 SM00411 bacterial (prokaryotic) histone like domain amad1_08355 SM00487 DEAD-like helicases superfamily amad1_08355 SM00490 helicase superfamily c-terminal domain amad1_08355 SM00982 amad1_08355 amad1_08355 SM01058 CarD-like/TRCF domain amad1_08375 SM00387 Histidine kinase-like ATPases amad1_08380 SM00897 FIST N domain amad1_08380 SM01204 amad1_08380 amad1_08465 SM00878 Biotin carboxylase C-terminal domain amad1_08485 SM00422 helix_turn_helix, mercury resistance amad1_08505 SM00062 Bacterial periplasmic substrate-binding proteins amad1_08505 SM00267 diguanylate cyclase amad1_08560 SM00843 amad1_08560 amad1_08605 SM00421 helix_turn_helix, Lux Regulon amad1_08620 SM01040 BRO family, N-terminal domain amad1_08880 SM00387 Histidine kinase-like ATPases amad1_08880 SM00388 His Kinase A (phosphoacceptor) domain amad1_08880 SM00448 cheY-homologous receiver domain amad1_08890 SM00116 Domain in cystathionine beta-synthase and other proteins. amad1_08915 SM00267 diguanylate cyclase amad1_08920 SM00342 helix_turn_helix, arabinose operon control protein amad1_08930 SM00382 ATPases associated with a variety of cellular activities amad1_08930 SM00487 DEAD-like helicases superfamily amad1_08930 SM00490 helicase superfamily c-terminal domain amad1_08930 SM00847 Helicase associated domain (HA2) Add an annotation amad1_08945 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase amad1_08950 SM00829 Enoylreductase amad1_08960 SM00479 amad1_08960 amad1_08970 SM00052 Putative diguanylate phosphodiesterase amad1_08975 SM00382 ATPases associated with a variety of cellular activities amad1_08990 SM00634 Bacterial Ig-like domain (group 1) amad1_09050 SM00587 ZnF_C4 abd HLH domain containing kinases domain amad1_09055 SM00316 Ribosomal protein S1-like RNA-binding domain amad1_09060 SM00363 S4 RNA-binding domain amad1_09095 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. amad1_09100 SM00822 amad1_09100 amad1_09110 SM00825 Beta-ketoacyl synthase amad1_09150 SM00267 diguanylate cyclase amad1_09260 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) amad1_09260 SM00091 PAS domain amad1_09260 SM00387 Histidine kinase-like ATPases amad1_09260 SM00388 His Kinase A (phosphoacceptor) domain amad1_09260 SM00448 cheY-homologous receiver domain amad1_09265 SM00448 cheY-homologous receiver domain amad1_09265 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. amad1_09275 SM00316 Ribosomal protein S1-like RNA-binding domain amad1_09300 SM01387 amad1_09300 amad1_09305 SM00363 S4 RNA-binding domain amad1_09330 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. amad1_09340 SM00448 cheY-homologous receiver domain amad1_09405 SM00729 Elongator protein 3, MiaB family, Radical SAM amad1_09445 SM00382 ATPases associated with a variety of cellular activities amad1_09475 SM00267 diguanylate cyclase amad1_09495 SM00857 Resolvase, N terminal domain amad1_09540 SM00347 helix_turn_helix multiple antibiotic resistance protein amad1_09560 SM00028 Tetratricopeptide repeats amad1_09585 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain amad1_09615 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. amad1_09620 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain amad1_09650 SM00357 Cold shock protein domain amad1_09660 SM00382 ATPases associated with a variety of cellular activities amad1_09660 SM01086 C-terminal, D2-small domain, of ClpB protein amad1_09665 SM00316 Ribosomal protein S1-like RNA-binding domain amad1_09690 SM00731 SprT homologues. amad1_09720 SM00870 amad1_09720 amad1_09725 SM00729 Elongator protein 3, MiaB family, Radical SAM amad1_09740 SM00936 Penicillin-binding protein 5, C-terminal domain amad1_09810 SM00267 diguanylate cyclase amad1_09820 SM01103 amad1_09820 amad1_09830 SM00382 ATPases associated with a variety of cellular activities amad1_09855 SM00052 Putative diguanylate phosphodiesterase amad1_09855 SM00267 diguanylate cyclase amad1_09855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain amad1_09870 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase amad1_09875 SM00046 Diacylglycerol kinase catalytic domain (presumed) amad1_09875 SM00195 Dual specificity phosphatase, catalytic domain amad1_09875 SM00404 Protein tyrosine phosphatase, catalytic domain motif amad1_09935 SM00507 HNH nucleases amad1_09940 SM00316 Ribosomal protein S1-like RNA-binding domain amad1_09940 SM00322 K homology RNA-binding domain amad1_10015 SM01321 amad1_10015 amad1_10030 SM00382 ATPases associated with a variety of cellular activities amad1_10165 SM00028 Tetratricopeptide repeats amad1_10185 SM00771 ZipA, C-terminal domain (FtsZ-binding) amad1_10190 SM00278 Helix-hairpin-helix DNA-binding motif class 1 amad1_10190 SM00292 breast cancer carboxy-terminal domain amad1_10190 SM00532 Ligase N family amad1_10205 SM00849 Metallo-beta-lactamase superfamily amad1_10210 SM00382 ATPases associated with a variety of cellular activities amad1_10235 SM00729 Elongator protein 3, MiaB family, Radical SAM amad1_10300 SM00861 Transketolase, pyrimidine binding domain amad1_10315 SM00881 CoA binding domain amad1_10355 SM00642 Alpha-amylase domain amad1_10360 SM00642 Alpha-amylase domain amad1_10370 SM00642 Alpha-amylase domain amad1_10375 SM00354 helix_turn _helix lactose operon repressor amad1_10495 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. amad1_10510 SM00387 Histidine kinase-like ATPases amad1_10515 SM00448 cheY-homologous receiver domain amad1_10515 SM00850 LytTr DNA-binding domain amad1_10535 SM00450 Rhodanese Homology Domain amad1_10535 SM00849 Metallo-beta-lactamase superfamily amad1_10550 SM00028 Tetratricopeptide repeats amad1_10550 SM00448 cheY-homologous receiver domain amad1_10560 SM00450 Rhodanese Homology Domain amad1_10565 SM00054 EF-hand, calcium binding motif amad1_10570 SM00487 DEAD-like helicases superfamily amad1_10570 SM00490 helicase superfamily c-terminal domain amad1_10575 SM00882 Coenzyme A transferase amad1_10580 SM00882 Coenzyme A transferase amad1_10595 SM00387 Histidine kinase-like ATPases amad1_10645 SM00861 Transketolase, pyrimidine binding domain amad1_10660 SM00220 Serine/Threonine protein kinases, catalytic domain amad1_10695 SM00945 ProQ/FINO family amad1_10700 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. amad1_10700 SM00245 tail specific protease amad1_10755 SM00981 amad1_10755 amad1_10765 SM00382 ATPases associated with a variety of cellular activities amad1_10910 SM00100 Cyclic nucleotide-monophosphate binding domain amad1_10910 SM00419 helix_turn_helix, cAMP Regulatory protein amad1_10935 SM00047 Lysozyme subfamily 2 amad1_10955 SM00450 Rhodanese Homology Domain amad1_10965 SM01144 amad1_10965 amad1_10975 SM00278 Helix-hairpin-helix DNA-binding motif class 1 amad1_10975 SM00465 GIY-YIG type nucleases (URI domain) amad1_10980 SM00421 helix_turn_helix, Lux Regulon amad1_10980 SM00448 cheY-homologous receiver domain amad1_11070 SM00382 ATPases associated with a variety of cellular activities amad1_11080 SM00843 amad1_11080 amad1_11085 SM00344 helix_turn_helix ASNC type amad1_11090 SM01002 Alanine dehydrogenase/PNT, C-terminal domain amad1_11090 SM01003 Alanine dehydrogenase/PNT, N-terminal domain amad1_11095 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family amad1_11115 SM00411 bacterial (prokaryotic) histone like domain amad1_11120 SM00316 Ribosomal protein S1-like RNA-binding domain amad1_11145 SM00434 DNA Topoisomerase IV amad1_11180 SM00052 Putative diguanylate phosphodiesterase amad1_11180 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. amad1_11180 SM00267 diguanylate cyclase amad1_11200 SM01130 amad1_11200 amad1_11280 SM00421 helix_turn_helix, Lux Regulon amad1_11280 SM00448 cheY-homologous receiver domain amad1_11310 SM00642 Alpha-amylase domain amad1_11320 SM00852 Probable molybdopterin binding domain amad1_11340 SM00382 ATPases associated with a variety of cellular activities amad1_11380 SM00530 Helix-turn-helix XRE-family like proteins amad1_11450 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. amad1_11460 SM00563 Phosphate acyltransferases amad1_11500 SM00342 helix_turn_helix, arabinose operon control protein amad1_11545 SM00893 Electron transfer flavoprotein domain amad1_11550 SM00893 Electron transfer flavoprotein domain amad1_11560 SM00528 Domain in histone-like proteins of HNS family amad1_11580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). amad1_11580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain amad1_11595 SM00797 Allophanate hydrolase subunit 2 amad1_11600 SM00796 Allophanate hydrolase subunit 1 amad1_11655 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. amad1_11700 SM00342 helix_turn_helix, arabinose operon control protein amad1_11715 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. amad1_11750 SM00829 Enoylreductase amad1_11765 SM00855 Phosphoglycerate mutase family amad1_11790 SM00729 Elongator protein 3, MiaB family, Radical SAM amad1_11795 SM00382 ATPases associated with a variety of cellular activities amad1_11825 SM00852 Probable molybdopterin binding domain amad1_11950 SM00052 Putative diguanylate phosphodiesterase amad1_11950 SM00267 diguanylate cyclase amad1_11955 SM00849 Metallo-beta-lactamase superfamily amad1_11990 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor amad1_11995 SM00450 Rhodanese Homology Domain amad1_12010 SM00382 ATPases associated with a variety of cellular activities amad1_12010 SM00448 cheY-homologous receiver domain amad1_12020 SM00387 Histidine kinase-like ATPases amad1_12020 SM00388 His Kinase A (phosphoacceptor) domain amad1_12025 SM00448 cheY-homologous receiver domain amad1_12030 SM00387 Histidine kinase-like ATPases amad1_12030 SM00388 His Kinase A (phosphoacceptor) domain amad1_12030 SM00448 cheY-homologous receiver domain amad1_12100 SM00631 amad1_12100 amad1_12105 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain amad1_12120 SM01350 amad1_12120 amad1_12125 SM00642 Alpha-amylase domain amad1_12130 SM00642 Alpha-amylase domain amad1_12140 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain amad1_12190 SM00342 helix_turn_helix, arabinose operon control protein amad1_12200 SM00893 Electron transfer flavoprotein domain amad1_12205 SM00893 Electron transfer flavoprotein domain amad1_12280 SM00749 bacterial OsmY and nodulation domain amad1_12355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). amad1_12355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain amad1_12380 SM00052 Putative diguanylate phosphodiesterase amad1_12380 SM00267 diguanylate cyclase amad1_12390 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. amad1_12395 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. amad1_12395 SM00387 Histidine kinase-like ATPases amad1_12515 SM00849 Metallo-beta-lactamase superfamily amad1_12520 SM00257 Lysin motif amad1_12545 SM00840 amad1_12545 amad1_12565 SM00244 prohibitin homologues amad1_12575 SM00642 Alpha-amylase domain amad1_12585 SM00829 Enoylreductase amad1_12590 SM01060 amad1_12590 amad1_12595 SM00829 Enoylreductase amad1_12610 SM00539 Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins. amad1_12670 SM00859 Semialdehyde dehydrogenase, NAD binding domain amad1_12680 SM01007 Class II Aldolase and Adducin N-terminal domain amad1_12685 SM00100 Cyclic nucleotide-monophosphate binding domain amad1_12685 SM00419 helix_turn_helix, cAMP Regulatory protein amad1_12705 SM00825 Beta-ketoacyl synthase amad1_12755 SM00422 helix_turn_helix, mercury resistance amad1_12760 SM00829 Enoylreductase amad1_12790 SM00382 ATPases associated with a variety of cellular activities amad1_12800 SM00387 Histidine kinase-like ATPases amad1_12800 SM00388 His Kinase A (phosphoacceptor) domain amad1_12800 SM00448 cheY-homologous receiver domain amad1_12920 SM00345 helix_turn_helix gluconate operon transcriptional repressor amad1_12965 SM00341 Helicase and RNase D C-terminal amad1_12995 SM00487 DEAD-like helicases superfamily amad1_12995 SM00488 amad1_12995 amad1_12995 SM00491 amad1_12995 amad1_13005 SM00014 Acid phosphatase homologues amad1_13020 SM00642 Alpha-amylase domain amad1_13145 SM00387 Histidine kinase-like ATPases amad1_13150 SM00493 amad1_13150 amad1_13160 SM00448 cheY-homologous receiver domain amad1_13200 SM00862 Transcriptional regulatory protein, C terminal amad1_13210 SM00091 PAS domain amad1_13210 SM00267 diguanylate cyclase amad1_13230 SM00028 Tetratricopeptide repeats amad1_13240 SM00382 ATPases associated with a variety of cellular activities amad1_13240 SM01086 C-terminal, D2-small domain, of ClpB protein amad1_13250 SM00363 S4 RNA-binding domain amad1_13320 SM00861 Transketolase, pyrimidine binding domain amad1_13375 SM00382 ATPases associated with a variety of cellular activities amad1_13385 SM00382 ATPases associated with a variety of cellular activities amad1_13420 SM00358 Double-stranded RNA binding motif amad1_13420 SM00535 Ribonuclease III family amad1_13430 SM00838 Elongation factor G C-terminus amad1_13485 SM00938 Nitrogen regulatory protein P-II amad1_13570 SM00904 Riboflavin kinase amad1_13615 SM00563 Phosphate acyltransferases amad1_13635 SM00411 bacterial (prokaryotic) histone like domain amad1_13645 SM00382 ATPases associated with a variety of cellular activities amad1_13645 SM00464 Found in ATP-dependent protease La (LON) amad1_13650 SM00382 ATPases associated with a variety of cellular activities amad1_13650 SM00994 ClpX C4-type zinc finger amad1_13650 SM01086 C-terminal, D2-small domain, of ClpB protein amad1_13700 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). amad1_13710 SM00116 Domain in cystathionine beta-synthase and other proteins. amad1_13710 SM01240 amad1_13710 amad1_13730 SM00382 ATPases associated with a variety of cellular activities amad1_13735 SM00564 beta-propeller repeat amad1_13740 SM00028 Tetratricopeptide repeats amad1_13760 SM00028 Tetratricopeptide repeats amad1_13760 SM00257 Lysin motif amad1_13770 SM00562 amad1_13770 amad1_13800 SM00382 ATPases associated with a variety of cellular activities amad1_13845 SM00850 LytTr DNA-binding domain amad1_13860 SM01323 amad1_13860 amad1_13925 SM00382 ATPases associated with a variety of cellular activities amad1_13945 SM00098 Alkaline phosphatase homologues amad1_13950 SM00260 Two component signalling adaptor domain amad1_13950 SM00448 cheY-homologous receiver domain amad1_14015 SM00028 Tetratricopeptide repeats amad1_14040 SM00984 UDP binding domain amad1_14170 SM00382 ATPases associated with a variety of cellular activities amad1_14260 SM00052 Putative diguanylate phosphodiesterase amad1_14260 SM00267 diguanylate cyclase amad1_14275 SM00354 helix_turn _helix lactose operon repressor amad1_14315 SM00967 RNA 2'-O ribose methyltransferase substrate binding amad1_14390 SM00953 amad1_14390 amad1_14410 SM00448 cheY-homologous receiver domain amad1_14410 SM00862 Transcriptional regulatory protein, C terminal amad1_14415 SM00387 Histidine kinase-like ATPases amad1_14415 SM00388 His Kinase A (phosphoacceptor) domain amad1_14460 SM01092 CO dehydrogenase flavoprotein C-terminal domain amad1_14465 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain amad1_14510 SM01322 amad1_14510 amad1_14555 SM00487 DEAD-like helicases superfamily amad1_14555 SM00490 helicase superfamily c-terminal domain amad1_14575 SM00028 Tetratricopeptide repeats amad1_14575 SM00387 Histidine kinase-like ATPases amad1_14575 SM00388 His Kinase A (phosphoacceptor) domain amad1_14575 SM00448 cheY-homologous receiver domain amad1_14585 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. amad1_14585 SM00387 Histidine kinase-like ATPases amad1_14585 SM00388 His Kinase A (phosphoacceptor) domain amad1_14585 SM00448 cheY-homologous receiver domain amad1_14605 SM00448 cheY-homologous receiver domain amad1_14605 SM00862 Transcriptional regulatory protein, C terminal amad1_14610 SM00388 His Kinase A (phosphoacceptor) domain amad1_14620 SM00530 Helix-turn-helix XRE-family like proteins amad1_14630 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase amad1_14640 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins amad1_14650 SM00244 prohibitin homologues amad1_14670 SM00382 ATPases associated with a variety of cellular activities amad1_14680 SM00696 Repeats found in Drosophila proteins. amad1_14710 SM00422 helix_turn_helix, mercury resistance amad1_14720 SM00342 helix_turn_helix, arabinose operon control protein amad1_14785 SM00926 Molybdopterin oxidoreductase Fe4S4 domain amad1_14810 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. amad1_14810 SM00382 ATPases associated with a variety of cellular activities amad1_14890 SM01011 Aminopeptidase P, N-terminal domain amad1_14910 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. amad1_14910 SM00387 Histidine kinase-like ATPases amad1_14910 SM00388 His Kinase A (phosphoacceptor) domain amad1_14910 SM00448 cheY-homologous receiver domain amad1_14995 SM00345 helix_turn_helix gluconate operon transcriptional repressor amad1_14995 SM00895 amad1_14995 amad1_15005 SM00644 amad1_15005 amad1_15060 SM00957 SecA DEAD-like domain amad1_15060 SM00958 SecA preprotein cross-linking domain amad1_15075 SM00864 Tubulin/FtsZ family, GTPase domain amad1_15075 SM00865 Tubulin/FtsZ family, C-terminal domain amad1_15080 SM00842 Cell division protein FtsA amad1_15210 SM00028 Tetratricopeptide repeats amad1_15210 SM00267 diguanylate cyclase amad1_15220 SM00382 ATPases associated with a variety of cellular activities amad1_15220 SM00448 cheY-homologous receiver domain amad1_15225 SM00387 Histidine kinase-like ATPases amad1_15275 SM00732 Likely ribonuclease with RNase H fold. amad1_15285 SM00382 ATPases associated with a variety of cellular activities amad1_15365 SM00530 Helix-turn-helix XRE-family like proteins amad1_15375 SM00360 RNA recognition motif amad1_15405 SM00986 Uracil DNA glycosylase superfamily amad1_15405 SM00987 UreE urease accessory protein, C-terminal domain amad1_15425 SM00382 ATPases associated with a variety of cellular activities amad1_15435 SM00829 Enoylreductase amad1_15445 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor amad1_15450 SM00226 Low molecular weight phosphatase family amad1_15465 SM00448 cheY-homologous receiver domain amad1_15475 SM00448 cheY-homologous receiver domain amad1_15475 SM00862 Transcriptional regulatory protein, C terminal amad1_15480 SM00387 Histidine kinase-like ATPases amad1_15480 SM00388 His Kinase A (phosphoacceptor) domain amad1_15580 SM00749 bacterial OsmY and nodulation domain amad1_15605 SM00421 helix_turn_helix, Lux Regulon amad1_15605 SM00448 cheY-homologous receiver domain amad1_15625 SM00345 helix_turn_helix gluconate operon transcriptional repressor amad1_15625 SM00895 amad1_15625 amad1_15650 SM00267 diguanylate cyclase amad1_15650 SM00448 cheY-homologous receiver domain amad1_15705 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) amad1_15705 SM00091 PAS domain amad1_15705 SM00387 Histidine kinase-like ATPases amad1_15705 SM00388 His Kinase A (phosphoacceptor) domain amad1_15705 SM00448 cheY-homologous receiver domain amad1_15710 SM00287 Bacterial SH3 domain homologues amad1_15710 SM00644 amad1_15710 amad1_15750 SM00450 Rhodanese Homology Domain amad1_15900 SM00448 cheY-homologous receiver domain amad1_15915 SM01230 amad1_15915 amad1_15925 SM00091 PAS domain amad1_15925 SM00387 Histidine kinase-like ATPases amad1_15925 SM00388 His Kinase A (phosphoacceptor) domain amad1_15930 SM00382 ATPases associated with a variety of cellular activities amad1_15930 SM00448 cheY-homologous receiver domain amad1_15935 SM00073 Histidine Phosphotransfer domain amad1_15940 SM00563 Phosphate acyltransferases amad1_15975 SM00244 prohibitin homologues amad1_15985 SM00387 Histidine kinase-like ATPases amad1_15985 SM00388 His Kinase A (phosphoacceptor) domain amad1_15985 SM00448 cheY-homologous receiver domain amad1_15985 SM01358 amad1_15985 amad1_16090 SM00382 ATPases associated with a variety of cellular activities amad1_16110 SM00530 Helix-turn-helix XRE-family like proteins amad1_16200 SM00028 Tetratricopeptide repeats amad1_16215 SM00345 helix_turn_helix gluconate operon transcriptional repressor amad1_16215 SM00895 amad1_16215 amad1_16235 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain amad1_16255 SM00267 diguanylate cyclase amad1_16285 SM00387 Histidine kinase-like ATPases amad1_16285 SM00448 cheY-homologous receiver domain amad1_16295 SM00886 Stress responsive A/B Barrel Domain amad1_16305 SM00382 ATPases associated with a variety of cellular activities amad1_16375 SM00849 Metallo-beta-lactamase superfamily amad1_16375 SM01027 Beta-Casp domain amad1_16390 SM00996 S-adenosyl-L-homocysteine hydrolase amad1_16390 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain amad1_16415 SM00564 beta-propeller repeat amad1_16420 SM00062 Bacterial periplasmic substrate-binding proteins amad1_16435 SM00382 ATPases associated with a variety of cellular activities amad1_16465 SM00729 Elongator protein 3, MiaB family, Radical SAM amad1_16490 SM00421 helix_turn_helix, Lux Regulon amad1_16490 SM00448 cheY-homologous receiver domain amad1_16495 SM00091 PAS domain amad1_16495 SM00387 Histidine kinase-like ATPases amad1_16495 SM00388 His Kinase A (phosphoacceptor) domain amad1_16495 SM00448 cheY-homologous receiver domain amad1_16500 SM00897 FIST N domain amad1_16500 SM01204 amad1_16500 amad1_16505 SM00900 amad1_16505 amad1_16515 SM00421 helix_turn_helix, Lux Regulon amad1_16515 SM00448 cheY-homologous receiver domain amad1_16555 SM00965 Secretin and TonB N terminus short domain amad1_16580 SM00421 helix_turn_helix, Lux Regulon amad1_16610 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins amad1_16615 SM00421 helix_turn_helix, Lux Regulon amad1_16615 SM00448 cheY-homologous receiver domain amad1_16630 SM00487 DEAD-like helicases superfamily amad1_16630 SM00490 helicase superfamily c-terminal domain amad1_16690 SM00267 diguanylate cyclase amad1_16745 SM00966 SpoVT / AbrB like domain amad1_16830 SM00345 helix_turn_helix gluconate operon transcriptional repressor amad1_16830 SM00895 amad1_16830 amad1_16860 SM00155 Phospholipase D. Active site motifs. amad1_16890 SM00448 cheY-homologous receiver domain amad1_16900 SM00387 Histidine kinase-like ATPases amad1_16905 SM00849 Metallo-beta-lactamase superfamily amad1_16910 SM00486 DNA polymerase type-B family amad1_16925 SM00360 RNA recognition motif amad1_16960 SM00986 Uracil DNA glycosylase superfamily amad1_16960 SM00987 UreE urease accessory protein, C-terminal domain amad1_16965 SM00052 Putative diguanylate phosphodiesterase amad1_16965 SM00267 diguanylate cyclase amad1_16965 SM00448 cheY-homologous receiver domain amad1_17045 SM00173 Ras subfamily of RAS small GTPases amad1_17045 SM00175 Rab subfamily of small GTPases amad1_17050 SM00052 Putative diguanylate phosphodiesterase amad1_17050 SM00267 diguanylate cyclase amad1_17060 SM00563 Phosphate acyltransferases amad1_17065 SM00563 Phosphate acyltransferases amad1_17195 SM00052 Putative diguanylate phosphodiesterase amad1_17220 SM00849 Metallo-beta-lactamase superfamily amad1_17255 SM00530 Helix-turn-helix XRE-family like proteins amad1_17275 SM00903 Flavin reductase like domain amad1_17310 SM00100 Cyclic nucleotide-monophosphate binding domain amad1_17325 SM00849 Metallo-beta-lactamase superfamily amad1_17365 SM00900 amad1_17365 amad1_17455 SM00028 Tetratricopeptide repeats amad1_17465 SM00267 diguanylate cyclase amad1_17465 SM00448 cheY-homologous receiver domain amad1_17470 SM00479 amad1_17470 amad1_17475 SM00116 Domain in cystathionine beta-synthase and other proteins. amad1_17490 SM00387 Histidine kinase-like ATPases amad1_17490 SM00388 His Kinase A (phosphoacceptor) domain amad1_17490 SM00448 cheY-homologous receiver domain amad1_17520 SM00421 helix_turn_helix, Lux Regulon amad1_17520 SM00448 cheY-homologous receiver domain amad1_17545 SM01358 amad1_17545 amad1_17555 SM00052 Putative diguanylate phosphodiesterase amad1_17555 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) amad1_17555 SM00091 PAS domain amad1_17555 SM00267 diguanylate cyclase amad1_17585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). amad1_17635 SM00984 UDP binding domain amad1_17775 SM00710 Parallel beta-helix repeats amad1_17885 SM00662 RNA polymerases D amad1_17890 SM00363 S4 RNA-binding domain amad1_17890 SM01390 amad1_17890 amad1_17955 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. amad1_17960 SM01374 amad1_17960 amad1_17965 SM00387 Histidine kinase-like ATPases amad1_17965 SM00388 His Kinase A (phosphoacceptor) domain amad1_17965 SM00448 cheY-homologous receiver domain amad1_17985 SM00967 RNA 2'-O ribose methyltransferase substrate binding amad1_17990 SM00316 Ribosomal protein S1-like RNA-binding domain amad1_17990 SM00357 Cold shock protein domain amad1_17990 SM00955 amad1_17990 amad1_18035 SM00671 Sel1-like repeats. amad1_18075 SM00387 Histidine kinase-like ATPases amad1_18075 SM00388 His Kinase A (phosphoacceptor) domain amad1_18075 SM00448 cheY-homologous receiver domain amad1_18100 SM00344 helix_turn_helix ASNC type amad1_18110 SM00357 Cold shock protein domain amad1_18140 SM00448 cheY-homologous receiver domain amad1_18150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain amad1_18150 SM00387 Histidine kinase-like ATPases amad1_18150 SM00388 His Kinase A (phosphoacceptor) domain amad1_18155 SM00448 cheY-homologous receiver domain amad1_18165 SM00926 Molybdopterin oxidoreductase Fe4S4 domain amad1_18225 SM00382 ATPases associated with a variety of cellular activities amad1_18230 SM00421 helix_turn_helix, Lux Regulon amad1_18255 SM00382 ATPases associated with a variety of cellular activities amad1_18255 SM01086 C-terminal, D2-small domain, of ClpB protein amad1_18270 SM00487 DEAD-like helicases superfamily amad1_18270 SM00490 helicase superfamily c-terminal domain amad1_18285 SM00919 Malic enzyme, NAD binding domain amad1_18285 SM01274 amad1_18285 amad1_18335 SM00052 Putative diguanylate phosphodiesterase amad1_18350 SM00382 ATPases associated with a variety of cellular activities amad1_18355 SM00382 ATPases associated with a variety of cellular activities amad1_18355 SM00962 SRP54-type protein, GTPase domain amad1_18355 SM00963 SRP54-type protein, helical bundle domain amad1_18445 SM00382 ATPases associated with a variety of cellular activities amad1_18450 SM00448 cheY-homologous receiver domain amad1_18450 SM00862 Transcriptional regulatory protein, C terminal amad1_18455 SM00387 Histidine kinase-like ATPases amad1_18455 SM00388 His Kinase A (phosphoacceptor) domain amad1_18465 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. amad1_18480 SM00116 Domain in cystathionine beta-synthase and other proteins. amad1_18515 SM00838 Elongation factor G C-terminus amad1_18515 SM00889 Elongation factor G, domain IV amad1_18530 SM00663 RNA polymerase I subunit A N-terminus amad1_18555 SM00649 Ribosomal protein L11/L12 amad1_18575 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. amad1_18575 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. amad1_18585 SM00382 ATPases associated with a variety of cellular activities amad1_18605 SM00487 DEAD-like helicases superfamily amad1_18605 SM00490 helicase superfamily c-terminal domain amad1_18640 SM00642 Alpha-amylase domain amad1_18680 SM00487 DEAD-like helicases superfamily amad1_18680 SM00490 helicase superfamily c-terminal domain amad1_18685 SM00849 Metallo-beta-lactamase superfamily amad1_18695 SM00841 Elongation factor P, C-terminal amad1_18695 SM01185 amad1_18695 amad1_18770 SM00244 prohibitin homologues amad1_18775 SM00244 prohibitin homologues amad1_18795 SM01340 amad1_18795 amad1_18800 SM00257 Lysin motif amad1_18800 SM00646 amad1_18800 amad1_18860 SM00382 ATPases associated with a variety of cellular activities amad1_18895 SM00849 Metallo-beta-lactamase superfamily amad1_18915 SM00387 Histidine kinase-like ATPases amad1_18915 SM00388 His Kinase A (phosphoacceptor) domain amad1_18925 SM00382 ATPases associated with a variety of cellular activities amad1_18935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). amad1_18940 SM00387 Histidine kinase-like ATPases amad1_18945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). amad1_18995 SM00354 helix_turn _helix lactose operon repressor amad1_19015 SM00267 diguanylate cyclase amad1_19070 SM00116 Domain in cystathionine beta-synthase and other proteins. amad1_19085 SM00867 YceI-like domain amad1_19115 SM00829 Enoylreductase amad1_19120 SM00267 diguanylate cyclase amad1_19125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain amad1_19125 SM00387 Histidine kinase-like ATPases amad1_19125 SM00388 His Kinase A (phosphoacceptor) domain amad1_19125 SM00448 cheY-homologous receiver domain amad1_19145 SM00420 helix_turn_helix, Deoxyribose operon repressor amad1_19145 SM01134 amad1_19145 amad1_19160 SM00267 diguanylate cyclase amad1_19175 SM00342 helix_turn_helix, arabinose operon control protein amad1_19175 SM01009 AlkA N-terminal domain amad1_19205 SM01002 Alanine dehydrogenase/PNT, C-terminal domain amad1_19205 SM01003 Alanine dehydrogenase/PNT, N-terminal domain amad1_19255 SM00965 Secretin and TonB N terminus short domain amad1_19315 SM00670 Large family of predicted nucleotide-binding domains amad1_19340 SM00883 Chaperonin 10 Kd subunit amad1_19375 SM00878 Biotin carboxylase C-terminal domain amad1_19400 SM00479 amad1_19400 amad1_19400 SM00990 amad1_19400 amad1_19430 SM00062 Bacterial periplasmic substrate-binding proteins amad1_19450 SM00798 AICARFT/IMPCHase bienzyme amad1_19450 SM00851 MGS-like domain amad1_19460 SM01209 amad1_19460 amad1_19460 SM01210 amad1_19460 amad1_19465 SM00047 Lysozyme subfamily 2 amad1_19490 SM00448 cheY-homologous receiver domain amad1_19490 SM00862 Transcriptional regulatory protein, C terminal amad1_19500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain amad1_19500 SM00387 Histidine kinase-like ATPases amad1_19500 SM00388 His Kinase A (phosphoacceptor) domain amad1_19530 SM00363 S4 RNA-binding domain amad1_19545 SM00382 ATPases associated with a variety of cellular activities amad1_19625 SM00867 YceI-like domain amad1_19660 SM00382 ATPases associated with a variety of cellular activities amad1_19685 SM00320 WD40 repeats amad1_19705 SM00316 Ribosomal protein S1-like RNA-binding domain amad1_19705 SM00732 Likely ribonuclease with RNase H fold. amad1_19715 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. amad1_19735 SM00342 helix_turn_helix, arabinose operon control protein amad1_19755 SM00633 Glycosyl hydrolase family 10 amad1_19765 SM00861 Transketolase, pyrimidine binding domain amad1_19805 SM00710 Parallel beta-helix repeats amad1_19815 SM00813 Alpha-L-arabinofuranosidase C-terminus amad1_19850 SM00631 amad1_19850 amad1_19950 SM00563 Phosphate acyltransferases amad1_19970 SM00382 ATPases associated with a variety of cellular activities amad1_20035 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase amad1_20140 SM00530 Helix-turn-helix XRE-family like proteins amad1_20150 SM00530 Helix-turn-helix XRE-family like proteins amad1_20155 SM00487 DEAD-like helicases superfamily amad1_20165 SM00487 DEAD-like helicases superfamily amad1_20165 SM00490 helicase superfamily c-terminal domain amad1_20180 SM00487 DEAD-like helicases superfamily amad1_20205 SM00422 helix_turn_helix, mercury resistance amad1_20235 SM00327 von Willebrand factor (vWF) type A domain amad1_20240 SM00327 von Willebrand factor (vWF) type A domain amad1_20295 SM00342 helix_turn_helix, arabinose operon control protein amad1_20380 SM00354 helix_turn _helix lactose operon repressor amad1_20395 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. amad1_20405 SM01144 amad1_20405 amad1_20425 SM00382 ATPases associated with a variety of cellular activities amad1_20465 SM00470 ParB-like nuclease domain amad1_20480 SM01228 amad1_20480 amad1_20515 SM01234 amad1_20515 amad1_20753 SM00530 Helix-turn-helix XRE-family like proteins amad1_20778 SM00470 ParB-like nuclease domain amad1_21018 SM00974 amad1_21018 amad1_21203 SM00465 GIY-YIG type nucleases (URI domain) amad1_21238 SM00382 ATPases associated with a variety of cellular activities amad1_21363 SM00857 Resolvase, N terminal domain amad1_21383 SM00530 Helix-turn-helix XRE-family like proteins amad1_21393 SM00487 DEAD-like helicases superfamily amad1_21558 SM00382 ATPases associated with a variety of cellular activities amad1_21578 SM00923 MbtH-like protein amad1_21583 SM00823 Phosphopantetheine attachment site amad1_21613 SM00822 amad1_21613 amad1_21613 SM00825 Beta-ketoacyl synthase amad1_21618 SM00823 Phosphopantetheine attachment site amad1_21643 SM00823 Phosphopantetheine attachment site amad1_21958 SM00382 ATPases associated with a variety of cellular activities amad1_21973 SM00052 Putative diguanylate phosphodiesterase amad1_21988 SM00267 diguanylate cyclase amad1_22008 SM01126 amad1_22008 amad1_22078 SM00470 ParB-like nuclease domain amad1_22093 SM00530 Helix-turn-helix XRE-family like proteins