locus_tag old_locus_tag gene Name start end strand product note type ID NCBI amad1_00005 amad1_00005 amad1_00005 552 689 - hypothetical protein gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00005 amad1_00010 amad1_00010 amad1_00010 759 2360 + chromosomal replication initiator protein dnaA COG0593 ATPase involved in DNA replication initiation gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00010 amad1_00015 amad1_00015 amad1_00015 2393 3493 + DNA polymerase III subunit beta COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00015 amad1_00020 amad1_00020 amad1_00020 3569 4693 + recombinational DNA repair ATPase COG1195 Recombinational DNA repair ATPase (RecF pathway) gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00020 amad1_00025 amad1_00025 amad1_00025 4702 7122 + DNA gyrase subunit B COG0187 Type IIA topoisomerase (DNA gyrase/topo II%2C topoisomerase IV)%2C B subunit gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00025 amad1_00030 amad1_00030 amad1_00030 7333 7776 - hypothetical protein COG0430 RNA 3'-terminal phosphate cyclase gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00030 amad1_00035 amad1_00035 glyS glyS 7861 9939 - glycyl-tRNA ligase subunit beta COG0751 Glycyl-tRNA synthetase%2C beta subunit gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00035 amad1_00040 amad1_00040 glyQ glyQ 9942 10847 - glycyl-tRNA ligase subunit alpha COG0752 Glycyl-tRNA synthetase%2C alpha subunit gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00040 amad1_00045 amad1_00045 amad1_00045 10993 11601 + 3-methyl-adenine DNA glycosylase I COG2818 3-methyladenine DNA glycosylase gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00045 amad1_00050 amad1_00050 amad1_00050 11688 12155 - hypothetical protein gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00050 amad1_00055 amad1_00055 amad1_00055 12174 12677 - GTPase activator COG3078 Uncharacterized protein conserved in bacteria gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00055 amad1_00060 amad1_00060 amad1_00060 12805 13353 - methyltransferase-like protein COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1%2C4-benzoquinol methylase gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00060 amad1_00065 amad1_00065 amad1_00065 13802 14425 - cytochrome c4 cytochrome C%2C class I in atlantica COG2863 Cytochrome c553 gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00065 amad1_00070 amad1_00070 amad1_00070 14600 15238 + ribosome biogenesis GTP-binding protein YsxC COG0218 Predicted GTPase gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00070 amad1_00075 amad1_00075 amad1_00075 15622 18414 - DNA polymerase I COG0258 5'-3' exonuclease (including N-terminal domain of PolI) gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00075 amad1_00080 amad1_00080 amad1_00080 18836 19489 + isoprenoid biosynthesis protein COG3155 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00080 amad1_00085 amad1_00085 amad1_00085 19678 21129 + Trk system potassium uptake protein TrkH COG0168 Trk-type K+ transport systems%2C membrane components gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00085 amad1_00090 amad1_00090 trkA trkA 21275 22654 - potassium transporter peripheral membrane component COG0569 K+ transport systems%2C NAD-binding component gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00090 amad1_00095 amad1_00095 amad1_00095 22720 24039 - 16S rRNA methyltransferase B COG0144 tRNA and rRNA cytosine-C5-methylases gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00095 amad1_00100 amad1_00100 fmt fmt 24042 24992 - methionyl-tRNA formyltransferase COG0223 Methionyl-tRNA formyltransferase gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00100 amad1_00105 amad1_00105 amad1_00105 25001 25510 - peptide deformylase COG0242 N-formylmethionyl-tRNA deformylase gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00105 amad1_00110 amad1_00110 amad1_00110 25727 26800 + Peptidoglycan-binding LysM COG1652 Uncharacterized protein containing LysM domain gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00110 amad1_00115 amad1_00115 amad1_00115 26840 27949 + DNA protecting protein DprA COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00115 amad1_00120 amad1_00120 amad1_00120 27951 28427 + smg protein COG2922 Uncharacterized protein conserved in bacteria gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00120 amad1_00125 amad1_00125 amad1_00125 28522 29064 + putative DNA topoisomerase COG0551 Zn-finger domain associated with topoisomerase type I gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00125 amad1_00130 amad1_00130 amad1_00130 29087 29692 + putative double-stranded RNA-binding protein COG0009 Putative translation factor (SUA5) gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00130 amad1_00135 amad1_00135 amad1_00135 29689 30621 + coproporphyrinogen III oxidase COG0408 Coproporphyrinogen III oxidase gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00135 amad1_00140 amad1_00140 amad1_00140 30857 31531 + outer membrane protein OmpW COG3047 Outer membrane protein W gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00140 amad1_00145 amad1_00145 amad1_00145 31647 32078 - putative hemoglobin-like oxygen-binding protein COG2346 Truncated hemoglobins gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00145 amad1_00150 amad1_00150 aroE aroE 32077 32916 + shikimate 5-dehydrogenase COG0169 Shikimate 5-dehydrogenase gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00150 amad1_00155 amad1_00155 amad1_00155 32913 33455 - putative carbonic anhydrase/acetyltransferase COG0663 Carbonic anhydrases/acetyltransferases%2C isoleucine patch superfamily gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00155 amad1_00160 amad1_00160 amad1_00160 33601 34644 + CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00160 amad1_00165 amad1_00165 amad1_00165 40650 41180 - hypothetical protein gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00165 amad1_00170 amad1_00170 amad1_00170 41316 42125 - hypothetical protein COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00170 amad1_00175 amad1_00175 amad1_00175 42127 42918 - hypothetical protein COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00175 amad1_00180 amad1_00180 amad1_00180 42917 43039 + hypothetical protein gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00180 amad1_00185 amad1_00185 amad1_00185 43059 46148 - DNA polymerase III subunit alpha COG0587 DNA polymerase III%2C alpha subunit gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00185 amad1_00190 amad1_00190 amad1_00190 46177 47631 - DNA repair nucleotidyltransferase/DNA polymerase COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00190 amad1_00195 amad1_00195 amad1_00195 47634 48338 - RecA/RadA recombinase COG1066 Predicted ATP-dependent serine protease gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00195 amad1_00200 amad1_00200 amad1_00200 48588 49100 - hypothetical protein gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00200 amad1_00205 amad1_00205 amad1_00205 49103 50854 - hypothetical protein COG4805 Uncharacterized protein conserved in bacteria gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00205 amad1_00210 amad1_00210 amad1_00210 50894 51229 - hypothetical protein COG4517 Uncharacterized protein conserved in bacteria gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00210 amad1_00215 amad1_00215 amad1_00215 51418 53055 + aminopeptidase COG2234 Predicted aminopeptidases gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00215 amad1_00220 amad1_00220 amad1_00220 53345 54112 + putative lipopolysaccharide biosynthesis glycosyltransferase COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00220 amad1_00225 amad1_00225 slmA slmA 54224 54811 - division inhibitor protein COG1309 Transcriptional regulator gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00225 amad1_00230 amad1_00230 amad1_00230 54933 56156 - DNA/pantothenate metabolism flavoprotein COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00230 amad1_00235 amad1_00235 amad1_00235 56362 57039 + DNA repair protein RadC COG2003 DNA repair proteins gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00235 amad1_00240 amad1_00240 amad1_00240 57132 57491 + hypothetical protein gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00240 amad1_00245 amad1_00245 amad1_00245 57585 58274 + putative lipoprotein gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00245 amad1_00250 amad1_00250 amad1_00250 58274 59023 + hypothetical protein gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00250 amad1_00255 amad1_00255 amad1_00255 59020 61122 + hypothetical protein gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00255 amad1_00260 amad1_00260 rpmB rpmB 61450 61686 + 50S ribosomal protein L28 COG0227 Ribosomal protein L28 gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00260 amad1_00265 amad1_00265 amad1_00265 61698 61853 + 50S ribosomal protein L33 COG0267 Ribosomal protein L33 gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00265 amad1_00270 amad1_00270 amad1_00270 62119 62583 + hypothetical protein gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00270 amad1_00275 amad1_00275 amad1_00275 62584 63393 + formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase COG0266 Formamidopyrimidine-DNA glycosylase gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00275 amad1_00280 amad1_00280 coaD coaD 63420 63908 - phosphopantetheine adenylyltransferase COG0669 Phosphopantetheine adenylyltransferase gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00280 amad1_00285 amad1_00285 amad1_00285 64014 64739 - 3-deoxy-D-manno-octulosonic-acid kinase COG0515 Serine/threonine protein kinase gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00285 amad1_00290 amad1_00290 amad1_00290 64833 65837 + putative ADP-heptose:LPS heptosyltransferase COG0859 ADP-heptose:LPS heptosyltransferase gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00290 amad1_00295 amad1_00295 amad1_00295 65927 66400 + hypothetical protein COG0226 ABC-type phosphate transport system%2C periplasmic component gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00295 amad1_00300 amad1_00300 amad1_00300 66397 67572 + hypothetical protein COG0362 6-phosphogluconate dehydrogenase gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00300 amad1_00305 amad1_00305 amad1_00305 67582 70026 + GGDEF/EAL domain-containing protein COG2199 FOG: GGDEF domain gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00305 amad1_00310 amad1_00310 amad1_00310 70185 71381 + 2-amino-3-ketobutyrate coenzyme A ligase COG0156 7-keto-8-aminopelargonate synthetase and related enzymes gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00310 amad1_00315 amad1_00315 tdh tdh 71378 72403 + L-threonine 3-dehydrogenase COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00315 amad1_00320 amad1_00320 amad1_00320 72403 72714 + glpE protein COG0607 Rhodanese-related sulfurtransferase gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00320 amad1_00325 amad1_00325 amad1_00325 72887 73750 + putative glpG protein COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00325 amad1_00330 amad1_00330 amad1_00330 73871 74284 - flagellar basal body-associated protein FliL-like protein COG1580 Flagellar basal body-associated protein gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00330 amad1_00335 amad1_00335 amad1_00335 74433 75002 + chorismate pyruvate lyase COG3161 4-hydroxybenzoate synthetase (chorismate lyase) gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00335 amad1_00340 amad1_00340 amad1_00340 74999 75859 + 4-hydroxybenzoate octaprenyltransferase COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00340 amad1_00345 amad1_00345 amad1_00345 76054 76428 + hypothetical protein COG4737 Uncharacterized protein conserved in bacteria gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00345 amad1_00350 amad1_00350 amad1_00350 76430 76735 + DNA-binding protein COG2944 Predicted transcriptional regulator gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00350 amad1_00355 amad1_00355 amad1_00355 76846 77097 - hypothetical protein COG2960 Uncharacterized protein conserved in bacteria gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00355 amad1_00360 amad1_00360 amad1_00360 77209 79224 + ATP-dependent DNA helicase Rep COG0210 Superfamily I DNA and RNA helicases gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00360 amad1_00365 amad1_00365 amad1_00365 79268 81868 - Intracellular signaling protein COG2199 FOG: GGDEF domain gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00365 amad1_00370 amad1_00370 amad1_00370 81972 82379 - cytochrome c5 COG3245 Cytochrome c5 gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00370 amad1_00375 amad1_00375 amad1_00375 82754 83947 - amidophosphoribosyl transferase COG3550 Uncharacterized protein related to capsule biosynthesis enzymes gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00375 amad1_00380 amad1_00380 amad1_00380 83937 84227 - hypothetical protein COG1396 Predicted transcriptional regulators gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00380 amad1_00385 amad1_00385 amad1_00385 84439 84531 - hypothetical protein gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00385 amad1_00390 amad1_00390 amad1_00390 84530 85927 + Na+/H+ antiporter NhaC COG1757 Na+/H+ antiporter gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00390 amad1_00395 amad1_00395 amad1_00395 86033 86452 - hypothetical protein COG2391 Predicted transporter component gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00395 amad1_00400 amad1_00400 amad1_00400 86473 86901 - hypothetical protein COG2391 Predicted transporter component gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00400 amad1_00405 amad1_00405 amad1_00405 86991 87443 - YhdE protein COG1959 Predicted transcriptional regulator gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00405 amad1_00410 amad1_00410 amad1_00410 87573 88373 + hypothetical protein COG0730 Predicted permeases gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00410 amad1_00415 amad1_00415 amad1_00415 88384 89238 + metallo-beta-lactamase family protein COG0491 Zn-dependent hydrolases%2C including glyoxylases gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00415 amad1_00420 amad1_00420 amad1_00420 89250 90923 + NAD(FAD)-dependent dehydrogenase COG3453 Uncharacterized protein conserved in bacteria gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00420 amad1_00425 amad1_00425 amad1_00425 91292 91555 + putative outer membrane receptor protein COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00425 amad1_00430 amad1_00430 amad1_00430 91562 92098 + membrane protein gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00430 amad1_00435 amad1_00435 amad1_00435 92174 92659 + hypothetical protein gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00435 amad1_00440 amad1_00440 amad1_00440 92756 94420 - cysteine transport (export) protein COG4987 ABC-type transport system involved in cytochrome bd biosynthesis%2C fused ATPase and permease components gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00440 amad1_00445 amad1_00445 amad1_00445 94428 96119 - MdlB protein COG4988 ABC-type transport system involved in cytochrome bd biosynthesis%2C ATPase and permease components gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00445 amad1_00450 amad1_00450 amad1_00450 96122 97123 - cytochrome d ubiquinol oxidase%2C subunit II COG1294 Cytochrome bd-type quinol oxidase%2C subunit 2 gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00450 amad1_00455 amad1_00455 amad1_00455 97126 98523 - putative transmembrane cytochrome bd-ii oxidase (subunit i) oxidoreductase protein COG1271 Cytochrome bd-type quinol oxidase%2C subunit 1 gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00455 amad1_00460 amad1_00460 amad1_00460 98678 99943 - hypothetical protein gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00460 amad1_00465 amad1_00465 amad1_00465 99992 100387 - Rhodanese-related sulfurtransferase COG0607 Rhodanese-related sulfurtransferase gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00465 amad1_00470 amad1_00470 amad1_00470 100396 101259 - Zn-dependent hydrolase COG0491 Zn-dependent hydrolases%2C including glyoxylases gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00470 amad1_00475 amad1_00475 amad1_00475 101322 101972 - peroxiredoxin COG0450 Peroxiredoxin gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00475 amad1_00480 amad1_00480 amad1_00480 102109 102552 + hypothetical protein gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00480 amad1_00485 amad1_00485 amad1_00485 102597 103430 - putative thiol:disulfide interchange protein COG0682 Prolipoprotein diacylglyceryltransferase gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00485 amad1_00490 amad1_00490 amad1_00490 103617 104126 - LuxR family transcriptional regulator COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00490 amad1_00495 amad1_00495 amad1_00495 104232 105422 + Outer membrane protein gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00495 amad1_00500 amad1_00500 amad1_00500 105419 106438 + hypothetical protein COG0845 Membrane-fusion protein gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00500 amad1_00505 amad1_00505 amad1_00505 106435 109503 + cation efflux system protein CzcA COG3696 Putative silver efflux pump gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00505 amad1_00510 amad1_00510 amad1_00510 109496 109813 + hypothetical protein gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00510 amad1_00515 amad1_00515 amad1_00515 110017 111777 + putative choline-glycine betaine transporter COG1292 Choline-glycine betaine transporter gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00515 amad1_00520 amad1_00520 amad1_00520 111922 112563 + hypothetical protein gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00520 amad1_00525 amad1_00525 amad1_00525 112613 112861 - hypothetical protein gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00525 amad1_00530 amad1_00530 amad1_00530 113153 114148 + hypothetical protein gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00530 amad1_00535 amad1_00535 amad1_00535 114491 115357 + hypothetical protein gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00535 amad1_00540 amad1_00540 amad1_00540 115354 116703 + hypothetical protein gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00540 amad1_00545 amad1_00545 amad1_00545 116706 118442 + NERD and DEXDc domain protein COG0003 Oxyanion-translocating ATPase gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00545 amad1_00550 amad1_00550 amad1_00550 118435 122091 + helicase domain-containing protein gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00550 amad1_00555 amad1_00555 amad1_00555 122084 123931 + hypothetical protein gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00555 amad1_00560 amad1_00560 amad1_00560 124110 125678 - C-5 cytosine-specific DNA methylase COG0270 Site-specific DNA methylase gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00560 amad1_00565 amad1_00565 amad1_00565 125783 128368 - type III restriction protein res subunit COG1061 DNA or RNA helicases of superfamily II gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00565 amad1_00570 amad1_00570 amad1_00570 128406 129008 - type 11 methyltransferase COG0500 SAM-dependent methyltransferases gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00570 amad1_00575 amad1_00575 amad1_00575 129196 130248 + hypothetical protein COG0845 Membrane-fusion protein gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00575 amad1_00580 amad1_00580 amad1_00580 130248 132980 + ABC transporter COG1131 ABC-type multidrug transport system%2C ATPase component gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00580 amad1_00585 amad1_00585 amad1_00585 132984 134105 + putative ABC transport protein COG0842 ABC-type multidrug transport system%2C permease component gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00585 amad1_00590 amad1_00590 amad1_00590 134234 136327 + FhuE receptor COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00590 amad1_00595 amad1_00595 amad1_00595 136758 137273 + hypothetical protein gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00595 amad1_00600 amad1_00600 amad1_00600 137342 138562 - Acyl-CoA dehydrogenase COG1960 Acyl-CoA dehydrogenases gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00600 amad1_00605 amad1_00605 amad1_00605 138658 139593 + LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00605 amad1_00610 amad1_00610 amad1_00610 139681 140442 + metallo-beta-lactamase family protein COG0491 Zn-dependent hydrolases%2C including glyoxylases gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00610 amad1_00615 amad1_00615 amad1_00615 140584 142023 + hypothetical protein COG3106 Predicted ATPase gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00615 amad1_00620 amad1_00620 amad1_00620 142020 143168 + hypothetical protein COG3768 Predicted membrane protein gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00620 amad1_00625 amad1_00625 amad1_00625 143178 144404 - hypothetical protein COG2966 Uncharacterized conserved protein gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00625 amad1_00630 amad1_00630 amad1_00630 144656 144814 + hypothetical protein gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00630 amad1_00635 amad1_00635 amad1_00635 144804 145400 + cell filamentation protein Fic COG2184 Protein involved in cell division gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00635 amad1_00640 amad1_00640 thiH thiH 145381 146517 - thiamine biosynthesis protein ThiH COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00640 amad1_00645 amad1_00645 thiG thiG 146514 147284 - thiazole synthase COG2022 Uncharacterized enzyme of thiazole biosynthesis gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00645 amad1_00650 amad1_00650 amad1_00650 147286 147495 - sulfur carrier protein ThiS COG2104 Sulfur transfer protein involved in thiamine biosynthesis gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00650 amad1_00655 amad1_00655 amad1_00655 147482 148261 - Thiamine biosynthesis protein ThiF COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00655 amad1_00660 amad1_00660 amad1_00660 148254 149834 - Thiamine monophosphate synthase COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00660 amad1_00665 amad1_00665 amad1_00665 149831 151759 - phosphomethylpyrimidine synthase ThiC COG0422 Thiamine biosynthesis protein ThiC gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00665 amad1_00670 amad1_00670 amad1_00670 152251 153426 - heme biosynthesis protein COG3071 Uncharacterized enzyme of heme biosynthesis gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00670 amad1_00675 amad1_00675 amad1_00675 153423 154595 - putative uroporphyrin-III C-methyltransferase COG2959 Uncharacterized enzyme of heme biosynthesis gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00675 amad1_00680 amad1_00680 amad1_00680 154596 155327 - uroporphyrinogen-III synthetase COG1587 Uroporphyrinogen-III synthase gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00680 amad1_00685 amad1_00685 hemC hemC 155425 156363 - porphobilinogen deaminase COG0181 Porphobilinogen deaminase gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00685 amad1_00690 amad1_00690 amad1_00690 156559 157620 + response regulator containing a CheY-like receiver domain and a GGDEF domain COG2199 FOG: GGDEF domain gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00690 amad1_00695 amad1_00695 amad1_00695 157617 157721 + hypothetical protein gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00695 amad1_00700 amad1_00700 amad1_00700 157734 158405 - putative phospholipase/carboxylesterase family protein COG0400 Predicted esterase gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00700 amad1_00705 amad1_00705 amad1_00705 158683 159324 + guanylate kinase COG0194 Guanylate kinase gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00705 amad1_00710 amad1_00710 rpoZ rpoZ 159494 159766 + DNA-directed RNA polymerase subunit omega COG1758 DNA-directed RNA polymerase%2C subunit K/omega gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00710 amad1_00715 amad1_00715 amad1_00715 159909 162020 + bifunctional (p)ppGpp synthetase II/guanosine-3%2C5-bis pyrophosphate 3-pyrophosphohydrolase COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00715 amad1_00720 amad1_00720 amad1_00720 162045 162431 + endoribonuclease L-PSP family protein COG0251 Putative translation initiation inhibitor%2C yjgF family gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00720 amad1_00725 amad1_00725 amad1_00725 162435 163142 + tRNA guanosine-2'-O-methyltransferase COG0566 rRNA methylases gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00725 amad1_00730 amad1_00730 amad1_00730 163317 165389 + ATP-dependent DNA helicase RecG COG1200 RecG-like helicase gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00730 amad1_00735 amad1_00735 amad1_00735 165382 166158 + hypothetical protein COG0500 SAM-dependent methyltransferases gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00735 amad1_00740 amad1_00740 amad1_00740 166168 166641 + AhpC/Tsa family antioxidant COG0678 Peroxiredoxin gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00740 amad1_00745 amad1_00745 amad1_00745 166998 167204 + hypothetical protein gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00745 amad1_00750 amad1_00750 amad1_00750 168106 168915 + hypothetical protein COG0672 High-affinity Fe2+/Pb2+ permease gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00750 amad1_00755 amad1_00755 amad1_00755 168925 169959 + ABC transporter periplasmic protein COG1840 ABC-type Fe3+ transport system%2C periplasmic component gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00755 amad1_00760 amad1_00760 amad1_00760 169956 171479 + putative ABC transporter permease COG1178 ABC-type Fe3+ transport system%2C permease component gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00760 amad1_00765 amad1_00765 amad1_00765 171479 172513 + ABC transporter ATPase COG3842 ABC-type spermidine/putrescine transport systems%2C ATPase components gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00765 amad1_00770 amad1_00770 amad1_00770 172628 173458 - mechanosensitive ion channel family protein COG0668 Small-conductance mechanosensitive channel gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00770 amad1_00775 amad1_00775 amad1_00775 173739 174920 + flavoprotein COG2081 Predicted flavoproteins gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00775 amad1_00780 amad1_00780 amad1_00780 174942 176576 - transposase%2C IS4 family protein COG5421 Transposase gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00780 amad1_00785 amad1_00785 amad1_00785 176952 177425 - transposase COG2801 Transposase and inactivated derivatives gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00785 amad1_00790 amad1_00790 amad1_00790 177420 177746 + hypothetical protein gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00790 amad1_00795 amad1_00795 amad1_00795 177791 178060 - transposase ORF-A%2C IS-type COG2801 Transposase and inactivated derivatives gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00795 amad1_00800 amad1_00800 amad1_00800 178109 178417 - hypothetical protein gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00800 amad1_00805 amad1_00805 amad1_00805 178546 181653 - putative RND efflux system protein COG3696 Putative silver efflux pump gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00805 amad1_00810 amad1_00810 amad1_00810 181714 182649 - putative RND efflux system protein MFP subunit COG0845 Membrane-fusion protein gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00810 amad1_00815 amad1_00815 amad1_00815 182649 183983 - putative RND efflux system protein COG1538 Outer membrane protein gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00815 amad1_00820 amad1_00820 amad1_00820 184056 184472 - hypothetical protein gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00820 amad1_00825 amad1_00825 amad1_00825 184438 185055 - Cation efflux protein COG1230 Co/Zn/Cd efflux system component gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00825 amad1_00830 amad1_00830 amad1_00830 185135 185524 + MerR family transcriptional regulator COG0789 Predicted transcriptional regulators gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00830 amad1_00835 amad1_00835 amad1_00835 185717 186007 + ISSwp1%2C transposase OrfA COG2963 Transposase and inactivated derivatives gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00835 amad1_00840 amad1_00840 amad1_00840 186040 186666 + IS3 family transposase COG2801 Transposase and inactivated derivatives gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00840 amad1_00845 amad1_00845 amad1_00845 187101 188129 + Abi family protein COG4823 Abortive infection bacteriophage resistance protein gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00845 amad1_00850 amad1_00850 amad1_00850 188255 188722 - hypothetical protein gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00850 amad1_00855 amad1_00855 amad1_00855 189195 190367 + hypothetical protein COG2200 FOG: EAL domain gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00855 amad1_00860 amad1_00860 amad1_00860 190416 191300 - chromosome replication initiation inhibitor protein COG0583 Transcriptional regulator gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00860 amad1_00865 amad1_00865 amad1_00865 191493 192095 + arginine exporter protein COG1279 Lysine efflux permease gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00865 amad1_00870 amad1_00870 amad1_00870 192203 192520 + putative exporter protein (SMR family) COG2076 Membrane transporters of cations and cationic drugs gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00870 amad1_00875 amad1_00875 amad1_00875 192635 193351 - hypothetical protein COG4446 Uncharacterized protein conserved in bacteria gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00875 amad1_00880 amad1_00880 amad1_00880 193516 194199 + DnaJ-like protein COG2214 DnaJ-class molecular chaperone gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00880 amad1_00885 amad1_00885 amad1_00885 194511 195656 + acriflavine resistance protein a COG0845 Membrane-fusion protein gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00885 amad1_00890 amad1_00890 amad1_00890 195678 198779 + acriflavine resistance protein B COG0841 Cation/multidrug efflux pump gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00890 amad1_00895 amad1_00895 amad1_00895 198837 199334 + hypothetical protein COG3150 Predicted esterase gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00895 amad1_00900 amad1_00900 amad1_00900 199547 201388 + bifunctional 4-hydroxybutyrate CoA-transferase/acetyltransferase COG0427 Acetyl-CoA hydrolase gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00900 amad1_00905 amad1_00905 amad1_00905 201385 202365 + Histone deacetylase/AcuC/AphA family protein COG0123 Deacetylases%2C including yeast histone deacetylase and acetoin utilization protein gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00905 amad1_00910 amad1_00910 amad1_00910 202408 203151 - glutaredoxin COG0695 Glutaredoxin and related proteins gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00910 amad1_00915 amad1_00915 amad1_00915 203273 203791 - Secreted protein%2C containing thioredoxin-like domain gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00915 amad1_00920 amad1_00920 amad1_00920 203824 205305 - putative methyl-accepting chemotaxis protein COG0840 Methyl-accepting chemotaxis protein gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00920 amad1_00925 amad1_00925 amad1_00925 205471 206343 + hypothetical protein COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00925 amad1_00930 amad1_00930 amad1_00930 206485 207807 - hypothetical protein gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00930 amad1_00935 amad1_00935 amad1_00935 207976 208590 - GTP cyclohydrolase II COG0807 GTP cyclohydrolase II gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00935 amad1_00940 amad1_00940 amad1_00940 208723 211560 - signal transduction protein COG5001 Predicted signal transduction protein containing a membrane domain%2C an EAL and a GGDEF domain gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00940 amad1_00945 amad1_00945 amad1_00945 211714 212031 - hypothetical protein gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00945 amad1_00950 amad1_00950 amad1_00950 212136 212804 + Glutathione S-transferase-like protein COG0625 Glutathione S-transferase gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00950 amad1_00955 amad1_00955 amad1_00955 212819 214660 - ATP-dependent DNA helicase COG0514 Superfamily II DNA helicase gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00955 amad1_00960 amad1_00960 amad1_00960 215006 216343 + putative Magnesium transporter COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00960 amad1_00965 amad1_00965 amad1_00965 216531 217445 + hypothetical protein COG2962 Predicted permeases gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00965 amad1_00970 amad1_00970 amad1_00970 217471 218751 - response regulator/GGDEF domain-containing protein COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00970 amad1_00975 amad1_00975 amad1_00975 218794 220965 - DNA helicase II COG0210 Superfamily I DNA and RNA helicases gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00975 amad1_00980 amad1_00980 amad1_00980 221394 222200 + serine acetyltransferase COG1045 Serine acetyltransferase gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00980 amad1_00985 amad1_00985 amad1_00985 222292 223032 - HAD-superfamily hydrolase COG1011 Predicted hydrolase (HAD superfamily) gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00985 amad1_00990 amad1_00990 amad1_00990 223054 223974 - tyrosine recombinase COG4973 Site-specific recombinase XerC gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00990 amad1_00995 amad1_00995 amad1_00995 223980 224675 - hypothetical protein COG3159 Uncharacterized protein conserved in bacteria gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_00995 amad1_01000 amad1_01000 dapF dapF 224672 225502 - diaminopimelate epimerase COG0253 Diaminopimelate epimerase gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01000 amad1_01005 amad1_01005 amad1_01005 225538 226788 - putative diaminopimelate decarboxylase COG0019 Diaminopimelate decarboxylase gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01005 amad1_01010 amad1_01010 amad1_01010 226788 227024 - hypothetical protein gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01010 amad1_01015 amad1_01015 amad1_01015 227037 228104 - glycosyl transferase family protein COG1819 Glycosyl transferases%2C related to UDP-glucuronosyltransferase gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01015 amad1_01020 amad1_01020 amad1_01020 228106 228618 - phosphoesterase%2C PA-phosphatase-like protein COG0671 Membrane-associated phospholipid phosphatase gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01020 amad1_01025 amad1_01025 amad1_01025 228970 229455 + ribonuclease activity regulator protein RraA COG0684 Demethylmenaquinone methyltransferase gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01025 amad1_01030 amad1_01030 amad1_01030 229588 230394 - putative S1/P1 Nuclease COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01030 amad1_01035 amad1_01035 amad1_01035 230397 231029 - aromatic acid decarboxylase COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01035 amad1_01040 amad1_01040 amad1_01040 231103 232461 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase COG0773 UDP-N-acetylmuramate-alanine ligase gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01040 amad1_01045 amad1_01045 amad1_01045 232776 233753 + fructose-1%2C6-bisphosphatase COG0158 Fructose-1%2C6-bisphosphatase gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01045 amad1_01050 amad1_01050 amad1_01050 233917 234447 + inorganic pyrophosphatase COG0221 Inorganic pyrophosphatase gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01050 amad1_01055 amad1_01055 amad1_01055 234581 235066 + lipoprotein COG3495 Uncharacterized protein conserved in bacteria gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01055 amad1_01060 amad1_01060 amad1_01060 235085 235783 - 2OG-Fe(II) oxygenase gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01060 amad1_01065 amad1_01065 amad1_01065 235806 236225 - thioesterase family protein COG0824 Predicted thioesterase gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01065 amad1_01070 amad1_01070 amad1_01070 236410 237912 + putative heat shock protein 70 family protein COG0443 Molecular chaperone gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01070 amad1_01075 amad1_01075 amad1_01075 237977 238144 - excinuclease ABC subunit A gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01075 amad1_01080 amad1_01080 amad1_01080 238348 241179 - excinuclease ABC subunit A COG0178 Excinuclease ATPase subunit gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01080 amad1_01085 amad1_01085 amad1_01085 241676 243013 + transporter COG0477 Permeases of the major facilitator superfamily gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01085 amad1_01090 amad1_01090 amad1_01090 243082 243666 + phosphatase/phosphohexomutase COG0637 Predicted phosphatase/phosphohexomutase gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01090 amad1_01095 amad1_01095 amad1_01095 243741 244334 - hypothetical protein gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01095 amad1_01100 amad1_01100 amad1_01100 244567 245430 + hypothetical protein COG1073 Hydrolases of the alpha/beta superfamily gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01100 amad1_01105 amad1_01105 amad1_01105 245578 245700 + hypothetical protein gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01105 amad1_01110 amad1_01110 amad1_01110 245862 246863 - putative repressor GalR COG1609 Transcriptional regulators gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01110 amad1_01115 amad1_01115 amad1_01115 247190 248212 + aldose 1-epimerase COG2017 Galactose mutarotase and related enzymes gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01115 amad1_01120 amad1_01120 amad1_01120 248382 249437 + galactose-1-phosphate uridylyltransferase COG1085 Galactose-1-phosphate uridylyltransferase gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01120 amad1_01125 amad1_01125 amad1_01125 249430 250578 + galactokinase COG0153 Galactokinase gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01125 amad1_01130 amad1_01130 amad1_01130 250919 252481 + putative sodium/hexose cotransport protein COG4146 Predicted symporter gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01130 amad1_01135 amad1_01135 amad1_01135 252746 253336 + single-strand binding protein COG0629 Single-stranded DNA-binding protein gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01135 amad1_01140 amad1_01140 amad1_01140 253605 254504 + hypothetical protein gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01140 amad1_01145 amad1_01145 amad1_01145 254721 257297 - hypothetical protein COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01145 amad1_01150 amad1_01150 amad1_01150 257315 258331 - UDP-glucose 4-epimerase COG1087 UDP-glucose 4-epimerase gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01150 amad1_01155 amad1_01155 amad1_01155 258342 260633 - beta-galactosidase COG3250 Beta-galactosidase/beta-glucuronidase gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01155 amad1_01160 amad1_01160 amad1_01160 260802 263459 - TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01160 amad1_01165 amad1_01165 amad1_01165 263456 263554 - hypothetical protein gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01165 amad1_01170 amad1_01170 amad1_01170 263905 265389 - carbohydrate kinase COG0554 Glycerol kinase gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01170 amad1_01175 amad1_01175 amad1_01175 265551 266309 + Glycerol-3-phosphate regulon repressor COG1349 Transcriptional regulators of sugar metabolism gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01175 amad1_01180 amad1_01180 glpD glpD 266573 268111 + glycerol-3-phosphate dehydrogenase COG0578 Glycerol-3-phosphate dehydrogenase gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01180 amad1_01185 amad1_01185 amad1_01185 268256 268840 + hypothetical protein gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01185 amad1_01190 amad1_01190 amad1_01190 268963 269466 + hypothetical protein gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01190 amad1_01195 amad1_01195 amad1_01195 269633 270547 + putative mannose-sensitive agglutinin biogenesis protein MshI gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01195 amad1_01200 amad1_01200 amad1_01200 270544 271170 + putative mannose-sensitive agglutinin biogenesis protein MshI gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01200 amad1_01205 amad1_01205 amad1_01205 271145 271792 + putative mannose-sensitive agglutinin biogenesis protein MshJ gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01205 amad1_01210 amad1_01210 amad1_01210 271799 272128 + putative mannose-sensitive agglutinin biogenesis protein MshK gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01210 amad1_01225 amad1_01225 amad1_01225 273865 274767 + putative mannose-sensitive agglutinin biogenesis protein MshM COG3267 Type II secretory pathway%2C component ExeA (predicted ATPase) gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01225 amad1_01230 amad1_01230 amad1_01230 274764 276020 + putative mannose-sensitive agglutinin biogenesis protein MshN COG0457 FOG: TPR repeat gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01230 amad1_01235 amad1_01235 amad1_01235 276020 277732 + putative mannose-sensitive agglutinin biogenesis protein MshE COG2804 Type II secretory pathway%2C ATPase PulE/Tfp pilus assembly pathway%2C ATPase PilB gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01235 amad1_01240 amad1_01240 amad1_01240 277732 278967 + putative mannose-sensitive agglutinin biogenesis protein MshG COG1459 Type II secretory pathway%2C component PulF gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01240 amad1_01245 amad1_01245 amad1_01245 278996 279490 + hypothetical protein gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01245 amad1_01250 amad1_01250 amad1_01250 279536 280123 + Pilin protein gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01250 amad1_01255 amad1_01255 amad1_01255 280146 280658 + MSHA pilin protein MshA gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01255 amad1_01260 amad1_01260 amad1_01260 280660 281121 + putative mannose-sensitive agglutinin biogenesis protein MshC gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01260 amad1_01265 amad1_01265 amad1_01265 281111 281632 + putative mannose-sensitive agglutinin biogenesis protein MshD COG2165 Type II secretory pathway%2C pseudopilin PulG gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01265 amad1_01270 amad1_01270 amad1_01270 281632 282375 + Tfp pilus assembly protein PilW gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01270 amad1_01275 amad1_01275 amad1_01275 282365 282853 + putative mannose-sensitive agglutinin biogenesis protein MshP gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01275 amad1_01280 amad1_01280 amad1_01280 282853 286578 + putative mannose-sensitive agglutinin biogenesis protein MshQ gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01280 amad1_01285 amad1_01285 amad1_01285 286863 287906 + rod shape-determining protein MreB COG1077 Actin-like ATPase involved in cell morphogenesis gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01285 amad1_01290 amad1_01290 amad1_01290 287944 288834 + rod shape-determining protein MreC COG1792 Cell shape-determining protein gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01290 amad1_01295 amad1_01295 amad1_01295 288827 289303 + rod shape-determining protein MreD COG2891 Cell shape-determining protein gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01295 amad1_01300 amad1_01300 amad1_01300 289340 289930 + septum formation protein Maf COG0424 Nucleotide-binding protein implicated in inhibition of septum formation gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01300 amad1_01305 amad1_01305 amad1_01305 289927 291393 + ribonuclease G COG1530 Ribonucleases G and E gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01305 amad1_01310 amad1_01310 amad1_01310 291420 295415 + putative protease COG3164 Predicted membrane protein gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01310 amad1_01315 amad1_01315 amad1_01315 295408 296226 + amidohydrolase COG0388 Predicted amidohydrolase gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01315 amad1_01320 amad1_01320 amad1_01320 296219 297661 + putative peptidase COG0312 Predicted Zn-dependent proteases and their inactivated homologs gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01320 amad1_01325 amad1_01325 amad1_01325 297761 298318 - hypothetical protein COG3028 Uncharacterized protein conserved in bacteria gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01325 amad1_01330 amad1_01330 amad1_01330 298391 299722 + pmbA protein COG0312 Predicted Zn-dependent proteases and their inactivated homologs gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01330 amad1_01335 amad1_01335 lacZ lacZ 299955 302888 + beta-D-galactosidase COG3250 Beta-galactosidase/beta-glucuronidase gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01335 amad1_01340 amad1_01340 amad1_01340 303070 303777 - two-component response regulator COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01340 amad1_01345 amad1_01345 amad1_01345 303932 305578 - Signal transduction histidine kinase COG0642 Signal transduction histidine kinase gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01345 amad1_01350 amad1_01350 glgA glgA 305687 307111 - glycogen synthase COG0297 Glycogen synthase gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01350 amad1_01355 amad1_01355 amad1_01355 307282 308364 - ribosomal RNA small subunit methyltransferase C COG2813 16S RNA G1207 methylase RsmC gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01355 amad1_01360 amad1_01360 trmB trmB 308364 309083 - tRNA (guanine-N(7)-)-methyltransferase COG0220 Predicted S-adenosylmethionine-dependent methyltransferase gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01360 amad1_01365 amad1_01365 amad1_01365 309175 309879 - putative hydrolase COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01365 amad1_01370 amad1_01370 amad1_01370 310014 311081 + A/G-specific adenine glycosylase COG1194 A/G-specific DNA glycosylase gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01370 amad1_01375 amad1_01375 amad1_01375 311135 311407 + oxidative damage protection protein COG2924 Fe-S cluster protector protein gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01375 amad1_01380 amad1_01380 amad1_01380 312986 313477 + putative metal-binding protein COG3019 Predicted metal-binding protein gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01380 amad1_01385 amad1_01385 amad1_01385 313655 314491 + formyl transferase domain-containing protein COG0223 Methionyl-tRNA formyltransferase gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01385 amad1_01390 amad1_01390 amad1_01390 315434 316840 - sensory histidine kinase in two-component region COG0642 Signal transduction histidine kinase gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01390 amad1_01395 amad1_01395 amad1_01395 316824 317507 - two component response regulator transcriptional regulator COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01395 amad1_01400 amad1_01400 amad1_01400 318255 318764 + MerR family transcriptional regulator COG3019 Predicted metal-binding protein gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01400 amad1_01405 amad1_01405 amad1_01405 318764 320128 + putative cation efflux protein COG1538 Outer membrane protein gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01405 amad1_01410 amad1_01410 amad1_01410 320125 322143 + putative cation efflux system protein COG0845 Membrane-fusion protein gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01410 amad1_01415 amad1_01415 amad1_01415 322140 325277 + cation efflux system protein CusA COG3696 Putative silver efflux pump gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01415 amad1_01420 amad1_01420 amad1_01420 325277 325468 + hypothetical protein gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01420 amad1_01425 amad1_01425 amad1_01425 325395 325523 + hypothetical protein gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01425 amad1_01430 amad1_01430 amad1_01430 325535 325927 + putative copper resistance (CopC-like) protein COG2372 Uncharacterized protein%2C homolog of Cu resistance protein CopC gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01430 amad1_01435 amad1_01435 amad1_01435 325936 326850 + putative copper export protein COG1276 Putative copper export protein gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01435 amad1_01440 amad1_01440 amad1_01440 326847 327341 + hypothetical protein gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01440 amad1_01445 amad1_01445 amad1_01445 327376 327858 + L-asparaginase COG4319 Ketosteroid isomerase homolog gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01445 amad1_01450 amad1_01450 amad1_01450 327927 328571 + hypothetical protein COG3503 Predicted membrane protein gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01450 amad1_01455 amad1_01455 amad1_01455 328849 329832 - hypothetical protein gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01455 amad1_01460 amad1_01460 amad1_01460 330143 331987 - FAD linked oxidase%2C N-terminal protein COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01460 amad1_01465 amad1_01465 amad1_01465 332691 332864 + hypothetical protein gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01465 amad1_01470 amad1_01470 amad1_01470 332873 333088 + hypothetical protein COG3005 Nitrate/TMAO reductases%2C membrane-bound tetraheme cytochrome c subunit gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01470 amad1_01475 amad1_01475 amad1_01475 333215 333397 + nitric oxide reductase%2C cytochrome c-containing subunit COG2857 Cytochrome c1 gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01475 amad1_01480 amad1_01480 amad1_01480 333494 333925 + hypothetical protein gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01480 amad1_01485 amad1_01485 amad1_01485 333998 334354 + hypothetical protein gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01485 amad1_01490 amad1_01490 amad1_01490 334532 334693 - hypothetical protein gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01490 amad1_01495 amad1_01495 amad1_01495 335225 337159 + putative NADH oxidoreductase COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01495 amad1_01500 amad1_01500 amad1_01500 337159 337917 + hypothetical protein gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01500 amad1_01505 amad1_01505 amad1_01505 337914 338708 + hypothetical protein gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01505 amad1_01510 amad1_01510 amad1_01510 338853 339944 + hypothetical protein gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01510 amad1_01515 amad1_01515 amad1_01515 339959 340513 + hydrogenase 2 maturation protease COG0680 Ni%2CFe-hydrogenase maturation factor gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01515 amad1_01520 amad1_01520 amad1_01520 340510 340944 + HupH hydrogenase expression protein gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01520 amad1_01525 amad1_01525 amad1_01525 340946 341944 + Ni-Fe hydrogenase%2C small subunit COG1740 Ni%2CFe-hydrogenase I small subunit gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01525 amad1_01530 amad1_01530 amad1_01530 341962 343839 + Ni-Fe hydrogenase large chain COG0374 Ni%2CFe-hydrogenase I large subunit gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01530 amad1_01535 amad1_01535 amad1_01535 343858 344073 + hypothetical protein gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01535 amad1_01540 amad1_01540 amad1_01540 344073 344300 + hydrogenase assembly chaperone HypC/HupF COG0298 Hydrogenase maturation factor gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01540 amad1_01545 amad1_01545 amad1_01545 344293 344679 + hydrogenase expression/formation protein HypA COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01545 amad1_01550 amad1_01550 amad1_01550 344669 345415 + hydrogenase nickel incorporation protein HypB COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01550 amad1_01555 amad1_01555 amad1_01555 345422 346555 + hydrogenase isoenzymes formation protein HypD COG0409 Hydrogenase maturation factor gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01555 amad1_01560 amad1_01560 amad1_01560 346555 348861 + (NiFe) hydrogenase maturation protein HypF COG0068 Hydrogenase maturation factor gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01560 amad1_01565 amad1_01565 amad1_01565 348861 349913 + hydrogenase expression/formation protein HypE COG0309 Hydrogenase maturation factor gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01565 amad1_01570 amad1_01570 amad1_01570 350032 350442 + putative Zn(II)-responsive transcriptional regulator COG0789 Predicted transcriptional regulators gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01570 amad1_01575 amad1_01575 amad1_01575 350467 352815 + cation transport ATPase COG2217 Cation transport ATPase gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01575 amad1_01580 amad1_01580 amad1_01580 352825 353181 + putative secreted protein containing plastocyanin domain COG4633 Uncharacterized protein conserved in bacteria gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01580 amad1_01585 amad1_01585 amad1_01585 353228 353551 + hypothetical protein gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01585 amad1_01590 amad1_01590 amad1_01590 353541 354194 + protein-S-isoprenylcysteine methyltransferase COG2020 Putative protein-S-isoprenylcysteine methyltransferase gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01590 amad1_01595 amad1_01595 amad1_01595 354205 354657 + hypothetical protein gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01595 amad1_01600 amad1_01600 amad1_01600 354707 355075 + hypothetical protein gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01600 amad1_01605 amad1_01605 amad1_01605 355151 355333 + hypothetical protein gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01605 amad1_01610 amad1_01610 amad1_01610 355735 356136 - transposase COG2801 Transposase and inactivated derivatives gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01610 amad1_01615 amad1_01615 amad1_01615 356610 357344 - hypothetical protein gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01615 amad1_01620 amad1_01620 amad1_01620 357429 358244 - hypothetical protein gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01620 amad1_01625 amad1_01625 amad1_01625 358306 358695 - hypothetical protein gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01625 amad1_01630 amad1_01630 amad1_01630 359518 359628 + hypothetical protein gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01630 amad1_01635 amad1_01635 amad1_01635 359879 360232 + hypothetical protein gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01635 amad1_01640 amad1_01640 amad1_01640 360277 361557 + putative RND efflux system protein COG1538 Outer membrane protein gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01640 amad1_01645 amad1_01645 amad1_01645 361560 362741 + HelB protein COG0845 Membrane-fusion protein gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01645 amad1_01650 amad1_01650 amad1_01650 362757 365864 + putative RND efflux system protein COG3696 Putative silver efflux pump gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01650 amad1_01655 amad1_01655 amad1_01655 365908 366786 + cation diffusion facilitator family transporter COG1230 Co/Zn/Cd efflux system component gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01655 amad1_01660 amad1_01660 amad1_01660 367070 367312 + hypothetical protein gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01660 amad1_01665 amad1_01665 amad1_01665 367529 367936 - putative diacylglycerol kinase COG0818 Diacylglycerol kinase gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01665 amad1_01670 amad1_01670 amad1_01670 367924 369531 - sulfatase COG2194 Predicted membrane-associated%2C metal-dependent hydrolase gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01670 amad1_01675 amad1_01675 amad1_01675 369652 371394 - glycosyl transferase family protein COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01675 amad1_01680 amad1_01680 amad1_01680 371369 372085 - hypothetical protein COG0398 Uncharacterized conserved protein gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01680 amad1_01685 amad1_01685 amad1_01685 372086 372820 - glycosyl transferase family protein COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01685 amad1_01690 amad1_01690 amad1_01690 373598 374404 + transcriptional regulator COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01690 amad1_01695 amad1_01695 amad1_01695 374388 375827 + putative sensor transduction kinase COG0642 Signal transduction histidine kinase gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01695 amad1_01700 amad1_01700 amad1_01700 377444 377935 + putative metal-binding protein COG3019 Predicted metal-binding protein gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01700 amad1_01705 amad1_01705 amad1_01705 378027 378380 + putative copper resistance (CopC-like) protein COG2372 Uncharacterized protein%2C homolog of Cu resistance protein CopC gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01705 amad1_01710 amad1_01710 amad1_01710 378396 379289 + putative copper export protein COG1276 Putative copper export protein gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01710 amad1_01715 amad1_01715 amad1_01715 379310 379780 + hypothetical protein gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01715 amad1_01720 amad1_01720 amad1_01720 379808 380278 + hypothetical protein gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01720 amad1_01725 amad1_01725 amad1_01725 380537 381373 + formyl transferase domain-containing protein COG0223 Methionyl-tRNA formyltransferase gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01725 amad1_01730 amad1_01730 amad1_01730 381492 381902 + hypothetical protein gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01730 amad1_01735 amad1_01735 amad1_01735 382168 382602 + putative Zn(II)-responsive transcriptional regulator COG0789 Predicted transcriptional regulators gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01735 amad1_01740 amad1_01740 amad1_01740 382678 384921 + cation transport ATPase COG2217 Cation transport ATPase gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01740 amad1_01745 amad1_01745 amad1_01745 384933 385286 + putative secreted protein containing plastocyanin domain COG4633 Uncharacterized protein conserved in bacteria gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01745 amad1_01750 amad1_01750 amad1_01750 385295 385633 + hypothetical protein gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01750 amad1_01755 amad1_01755 amad1_01755 385652 386284 + protein-S-isoprenylcysteine methyltransferase COG2020 Putative protein-S-isoprenylcysteine methyltransferase gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01755 amad1_01760 amad1_01760 amad1_01760 386268 386678 + hypothetical protein gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01760 amad1_01765 amad1_01765 amad1_01765 386696 387067 + hypothetical protein COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01765 amad1_01770 amad1_01770 amad1_01770 387167 387412 + hypothetical protein gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01770 amad1_01775 amad1_01775 amad1_01775 387514 387669 + hypothetical protein gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01775 amad1_01780 amad1_01780 amad1_01780 387825 389150 - Amino acid permease-associated region COG0531 Amino acid transporters gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01780 amad1_01785 amad1_01785 amad1_01785 389308 390054 - copper resistance protein B COG3667 Uncharacterized protein involved in copper resistance gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01785 amad1_01790 amad1_01790 amad1_01790 390064 391878 - Multicopper oxidase COG2132 Putative multicopper oxidases gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01790 amad1_01795 amad1_01795 amad1_01795 392544 393275 - hypothetical protein COG0695 Glutaredoxin and related proteins gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01795 amad1_01800 amad1_01800 amad1_01800 393268 393798 - hypothetical protein COG3544 Uncharacterized protein conserved in bacteria gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01800 amad1_01805 amad1_01805 amad1_01805 393920 394315 + hypothetical protein gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01805 amad1_01810 amad1_01810 amad1_01810 394939 396228 - phage integrase family protein site-specific recombinase COG4974 Site-specific recombinase XerD gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01810 amad1_01815 amad1_01815 amad1_01815 396280 397353 - integrase family protein COG0582 Integrase gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01815 amad1_01820 amad1_01820 amad1_01820 397491 398498 + transposase COG3547 Transposase and inactivated derivatives gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01820 amad1_01825 amad1_01825 amad1_01825 398583 399224 + Integrase COG2801 Transposase and inactivated derivatives gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01825 amad1_01830 amad1_01830 amad1_01830 399253 399648 - hypothetical protein gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01830 amad1_01835 amad1_01835 amad1_01835 399620 401185 - transposase COG3436 Transposase and inactivated derivatives gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01835 amad1_01840 amad1_01840 amad1_01840 401209 401544 - transposase-like protein COG3436 Transposase and inactivated derivatives gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01840 amad1_01845 amad1_01845 amad1_01845 401544 401828 - hypothetical protein COG2801 Transposase and inactivated derivatives gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01845 amad1_01850 amad1_01850 amad1_01850 401885 402112 + Integrase COG2801 Transposase and inactivated derivatives gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01850 amad1_01855 amad1_01855 amad1_01855 402222 403529 - patatin COG1752 Predicted esterase of the alpha-beta hydrolase superfamily gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01855 amad1_01860 amad1_01860 amad1_01860 403694 404614 - transposase gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01860 amad1_01865 amad1_01865 amad1_01865 405125 405385 + hypothetical protein gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01865 amad1_01870 amad1_01870 amad1_01870 405510 406181 - cryptic haloacid dehalogenase 1 COG1011 Predicted hydrolase (HAD superfamily) gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01870 amad1_01875 amad1_01875 amad1_01875 406414 408672 - TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01875 amad1_01880 amad1_01880 amad1_01880 408989 410014 + transcriptional regulator%2C LacI family protein COG1609 Transcriptional regulators gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01880 amad1_01885 amad1_01885 amad1_01885 410191 411429 + major facilitator transporter COG0738 Fucose permease gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01885 amad1_01890 amad1_01890 amad1_01890 411432 412988 + trehalase COG1626 Neutral trehalase gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01890 amad1_01895 amad1_01895 amad1_01895 413054 414850 - GGDEF family protein COG2199 FOG: GGDEF domain gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01895 amad1_01900 amad1_01900 amad1_01900 414994 415878 - DMT superfamily permease COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01900 amad1_01905 amad1_01905 amad1_01905 416148 416666 + putative hydrolase/phosphatase protein COG0546 Predicted phosphatases gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01905 amad1_01910 amad1_01910 amad1_01910 416670 416825 - hypothetical protein gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01910 amad1_01915 amad1_01915 amad1_01915 416904 420746 + putative two-component system sensor kinase/response regulator fusion protein COG0642 Signal transduction histidine kinase gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01915 amad1_01920 amad1_01920 amad1_01920 420765 421088 - hypothetical protein gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01920 amad1_01925 amad1_01925 amad1_01925 421154 422107 - Twin-arginine translocation pathway signal COG1082 Sugar phosphate isomerases/epimerases gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01925 amad1_01930 amad1_01930 amad1_01930 422162 423166 - LacI family transcriptional repressor COG1609 Transcriptional regulators gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01930 amad1_01935 amad1_01935 amad1_01935 423543 424697 + oxidoreductase%2C Gfo/Idh/MocA family protein COG0673 Predicted dehydrogenases and related proteins gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01935 amad1_01940 amad1_01940 amad1_01940 424734 425801 + xylose isomerase-like protein COG1082 Sugar phosphate isomerases/epimerases gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01940 amad1_01945 amad1_01945 amad1_01945 425828 427045 + putative nucleoside permease COG0477 Permeases of the major facilitator superfamily gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01945 amad1_01950 amad1_01950 amad1_01950 427038 427967 + Twin-arginine translocation pathway signal COG3622 Hydroxypyruvate isomerase gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01950 amad1_01955 amad1_01955 amad1_01955 428012 429697 + oxidoreductase COG2303 Choline dehydrogenase and related flavoproteins gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01955 amad1_01960 amad1_01960 amad1_01960 429697 430314 + Twin-arginine translocation pathway signal COG1012 NAD-dependent aldehyde dehydrogenases gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01960 amad1_01965 amad1_01965 amad1_01965 430380 431147 + putative multi-domain-containing protein gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01965 amad1_01970 amad1_01970 amad1_01970 431144 432292 - Iron-containing alcohol dehydrogenase COG1454 Alcohol dehydrogenase%2C class IV gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01970 amad1_01975 amad1_01975 amad1_01975 438859 439860 + branched-chain amino acid aminotransferase COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01975 amad1_01980 amad1_01980 amad1_01980 439932 440678 - phosphoglyceromutase COG0588 Phosphoglycerate mutase 1 gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01980 amad1_01985 amad1_01985 amad1_01985 440855 441211 - hypothetical protein COG3542 Uncharacterized conserved protein gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01985 amad1_01990 amad1_01990 amad1_01990 441783 444500 + aconitate hydratase 1 COG1048 Aconitase A gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01990 amad1_01995 amad1_01995 amad1_01995 444565 445059 - hypothetical protein COG0790 FOG: TPR repeat%2C SEL1 subfamily gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_01995 amad1_02000 amad1_02000 amad1_02000 445199 447415 - type II secretion system protein E COG2804 Type II secretory pathway%2C ATPase PulE/Tfp pilus assembly pathway%2C ATPase PilB gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02000 amad1_02005 amad1_02005 amad1_02005 447833 448144 + 30S ribosomal protein S10 COG0051 Ribosomal protein S10 gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02005 amad1_02010 amad1_02010 amad1_02010 448163 448801 + 50S ribosomal protein L3 COG0087 Ribosomal protein L3 gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02010 amad1_02015 amad1_02015 rplD rplD 448820 449425 + 50S ribosomal protein L4 COG0088 Ribosomal protein L4 gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02015 amad1_02020 amad1_02020 rplW rplW 449422 449721 + 50S ribosomal protein L23 COG0089 Ribosomal protein L23 gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02020 amad1_02025 amad1_02025 rplB rplB 449736 450560 + 50S ribosomal protein L2 COG0090 Ribosomal protein L2 gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02025 amad1_02030 amad1_02030 amad1_02030 450576 450851 + 30S ribosomal protein S19 COG0185 Ribosomal protein S19 gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02030 amad1_02035 amad1_02035 rplV rplV 450863 451195 + 50S ribosomal protein L22 COG0091 Ribosomal protein L22 gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02035 amad1_02040 amad1_02040 amad1_02040 451205 451909 + 30S ribosomal protein S3 COG0092 Ribosomal protein S3 gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02040 amad1_02045 amad1_02045 rplP rplP 451912 452322 + 50S ribosomal protein L16 COG0197 Ribosomal protein L16/L10E gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02045 amad1_02050 amad1_02050 amad1_02050 452322 452513 + 50S ribosomal protein L29 COG0255 Ribosomal protein L29 gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02050 amad1_02055 amad1_02055 amad1_02055 452513 452770 + 30S ribosomal protein S17 COG0186 Ribosomal protein S17 gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02055 amad1_02060 amad1_02060 amad1_02060 452880 453971 - glycoside hydrolase family protein COG0438 Glycosyltransferase gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02060 amad1_02065 amad1_02065 amad1_02065 454000 455079 - lipopolysaccharide heptosyltransferase-1 COG0859 ADP-heptose:LPS heptosyltransferase gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02065 amad1_02070 amad1_02070 amad1_02070 455209 456519 + 3-deoxy-D-manno-octulosonic-acid transferase COG1519 3-deoxy-D-manno-octulosonic-acid transferase gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02070 amad1_02075 amad1_02075 amad1_02075 456799 458613 - Na+/H+ antiporter COG0025 NhaP-type Na+/H+ and K+/H+ antiporters gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02075 amad1_02080 amad1_02080 amad1_02080 458905 459756 + hypothetical protein gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02080 amad1_02085 amad1_02085 amad1_02085 459948 460535 + hypothetical protein gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02085 amad1_02090 amad1_02090 amad1_02090 460634 462544 - methyl-accepting chemotaxis protein COG0840 Methyl-accepting chemotaxis protein gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02090 amad1_02095 amad1_02095 amad1_02095 462848 465037 - peptidyl-dipeptidase Dcp COG0339 Zn-dependent oligopeptidases gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02095 amad1_02100 amad1_02100 amad1_02100 465293 465811 + formyltetrahydrofolate deformylase gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02100 amad1_02105 amad1_02105 amad1_02105 465920 466774 - formyltetrahydrofolate deformylase COG0788 Formyltetrahydrofolate hydrolase gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02105 amad1_02110 amad1_02110 amad1_02110 466997 467650 - 2%2C5 RNA ligase COG1514 2'-5' RNA ligase gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02110 amad1_02115 amad1_02115 amad1_02115 467840 470578 + ATP-dependent helicase HrpB COG1643 HrpA-like helicases gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02115 amad1_02120 amad1_02120 amad1_02120 470686 471951 - membrane-bound lytic transglycosylase-like protein COG2951 Membrane-bound lytic murein transglycosylase B gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02120 amad1_02125 amad1_02125 amad1_02125 472218 474578 + penicillin-binding protein 1B COG0744 Membrane carboxypeptidase (penicillin-binding protein) gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02125 amad1_02130 amad1_02130 amad1_02130 474724 474834 - hypothetical protein gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02130 amad1_02135 amad1_02135 amad1_02135 474846 475130 - hypothetical protein COG0687 Spermidine/putrescine-binding periplasmic protein gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02135 amad1_02140 amad1_02140 amad1_02140 475553 476482 - hypothetical protein COG2354 Uncharacterized protein conserved in bacteria gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02140 amad1_02145 amad1_02145 amad1_02145 476857 477576 + AraC family transcriptional regulator COG2207 AraC-type DNA-binding domain-containing proteins gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02145 amad1_02150 amad1_02150 amad1_02150 477625 478440 - hypothetical protein gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02150 amad1_02155 amad1_02155 amad1_02155 478723 479061 + nitrogen regulatory protein P-II COG0347 Nitrogen regulatory protein PII gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02155 amad1_02160 amad1_02160 amad1_02160 479094 480341 + putative ammonium transporter COG0004 Ammonia permease gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02160 amad1_02165 amad1_02165 amad1_02165 480575 482266 + gamma-glutamyltransferase COG0405 Gamma-glutamyltransferase gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02165 amad1_02170 amad1_02170 amad1_02170 482428 483354 + putative melanin biosynthesis protein TyrA COG2837 Predicted iron-dependent peroxidase gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02170 amad1_02175 amad1_02175 amad1_02175 483424 484500 - adenylate cyclase COG2114 Adenylate cyclase%2C family 3 (some proteins contain HAMP domain) gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02175 amad1_02180 amad1_02180 amad1_02180 484677 485957 - glutamate-1-semialdehyde aminotransferase COG0001 Glutamate-1-semialdehyde aminotransferase gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02180 amad1_02185 amad1_02185 amad1_02185 485962 486975 - aspartate carbamoyltransferase COG0540 Aspartate carbamoyltransferase%2C catalytic chain gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02185 amad1_02190 amad1_02190 amad1_02190 487107 487718 - TetR family transcriptional regulator COG1309 Transcriptional regulator gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02190 amad1_02195 amad1_02195 amad1_02195 487898 489037 + RND family efflux transporter MFP subunit COG0845 Membrane-fusion protein gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02195 amad1_02200 amad1_02200 amad1_02200 489037 492183 + AcrB/AcrD/AcrF family protein COG0841 Cation/multidrug efflux pump gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02200 amad1_02205 amad1_02205 amad1_02205 492348 493064 + hypothetical protein gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02205 amad1_02210 amad1_02210 amad1_02210 493061 496189 - sensor protein BarA COG0642 Signal transduction histidine kinase gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02210 amad1_02215 amad1_02215 amad1_02215 496507 498792 + DNA topoisomerase IV subunit A COG0188 Type IIA topoisomerase (DNA gyrase/topo II%2C topoisomerase IV)%2C A subunit gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02215 amad1_02220 amad1_02220 amad1_02220 498856 499395 + 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02220 amad1_02225 amad1_02225 amad1_02225 499405 501567 + sensory box protein COG2199 FOG: GGDEF domain gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02225 amad1_02230 amad1_02230 amad1_02230 501688 502494 - hypothetical protein gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02230 amad1_02235 amad1_02235 amad1_02235 502610 504079 - succinylglutamic semialdehyde dehydrogenase COG1012 NAD-dependent aldehyde dehydrogenases gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02235 amad1_02240 amad1_02240 amad1_02240 504093 505130 - arginine N-succinyltransferase COG3138 Arginine/ornithine N-succinyltransferase beta subunit gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02240 amad1_02245 amad1_02245 argD argD 505151 506359 - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein COG4992 Ornithine/acetylornithine aminotransferase gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02245 amad1_02250 amad1_02250 amad1_02250 506826 508046 - putative signal transduction protein gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02250 amad1_02255 amad1_02255 amad1_02255 508287 508871 - P-aminobenzoate synthetase%2C component II COG0512 Anthranilate/para-aminobenzoate synthases component II gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02255 amad1_02260 amad1_02260 amad1_02260 508971 509978 - tryptophanyl-tRNA synthetase COG0180 Tryptophanyl-tRNA synthetase gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02260 amad1_02265 amad1_02265 amad1_02265 510044 510721 - ribulose-phosphate 3-epimerase COG0036 Pentose-5-phosphate-3-epimerase gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02265 amad1_02270 amad1_02270 amad1_02270 511028 511849 + hypothetical protein gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02270 amad1_02275 amad1_02275 amad1_02275 512020 512328 + hypothetical protein gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02275 amad1_02280 amad1_02280 amad1_02280 512337 512537 + hypothetical protein gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02280 amad1_02285 amad1_02285 amad1_02285 512629 513510 - DNA adenine methylase COG0338 Site-specific DNA methylase gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02285 amad1_02290 amad1_02290 amad1_02290 513737 515248 - DamX-like protein COG3266 Uncharacterized protein conserved in bacteria gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02290 amad1_02295 amad1_02295 aroB aroB 515420 516487 - 3-dehydroquinate synthase COG0337 3-dehydroquinate synthetase gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02295 amad1_02300 amad1_02300 aroK aroK 516519 517034 - shikimate kinase I COG0703 Shikimate kinase gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02300 amad1_02305 amad1_02305 amad1_02305 517305 518948 - putative type IV pilus biogenesis protein PilQ COG4796 Type II secretory pathway%2C component HofQ gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02305 amad1_02310 amad1_02310 amad1_02310 519080 519607 - putative type IV pilus biogenesis protein PilP COG3168 Tfp pilus assembly protein PilP gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02310 amad1_02315 amad1_02315 amad1_02315 519604 520215 - type IV pilus biogenesis protein PilO COG3167 Tfp pilus assembly protein PilO gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02315 amad1_02320 amad1_02320 amad1_02320 520215 520796 - type IV pilus biogenesis protein PilN COG3166 Tfp pilus assembly protein PilN gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02320 amad1_02325 amad1_02325 amad1_02325 520784 521851 - putative type IV pilus biogenesis protein PilM COG4972 Tfp pilus assembly protein%2C ATPase PilM gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02325 amad1_02330 amad1_02330 amad1_02330 521988 524651 + bifunctional murein transglycosylase/transpeptidase COG5009 Membrane carboxypeptidase/penicillin-binding protein gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02330 amad1_02335 amad1_02335 amad1_02335 524730 526421 + malate dehydrogenase COG0281 Malic enzyme gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02335 amad1_02340 amad1_02340 amad1_02340 526418 526603 - hypothetical protein gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02340 amad1_02345 amad1_02345 amad1_02345 526727 526996 + hypothetical protein gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02345 amad1_02350 amad1_02350 amad1_02350 527287 528144 + S-transferase COG0625 Glutathione S-transferase gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02350 amad1_02355 amad1_02355 amad1_02355 528193 528684 - hypothetical protein gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02355 amad1_02360 amad1_02360 amad1_02360 529096 530571 + catalase COG0753 Catalase gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02360 amad1_02365 amad1_02365 amad1_02365 530624 531226 - TetR family transcriptional regulator COG1309 Transcriptional regulator gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02365 amad1_02370 amad1_02370 amad1_02370 531506 532372 - alpha/beta hydrolase-like protein COG4757 Predicted alpha/beta hydrolase gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02370 amad1_02375 amad1_02375 amad1_02375 532506 534347 - sensory box/GGDEF family protein COG2202 FOG: PAS/PAC domain gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02375 amad1_02380 amad1_02380 amad1_02380 534495 534743 - sensory box/GGDEF family protein gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02380 amad1_02385 amad1_02385 amad1_02385 534933 536243 - N-acetylglutamate synthase COG0548 Acetylglutamate kinase gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02385 amad1_02390 amad1_02390 amad1_02390 536259 537641 - argininosuccinate lyase COG0165 Argininosuccinate lyase gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02390 amad1_02395 amad1_02395 amad1_02395 537706 538911 - argininosuccinate synthase COG0137 Argininosuccinate synthase gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02395 amad1_02400 amad1_02400 amad1_02400 538949 539860 - ornithine carbamoyltransferase COG0078 Ornithine carbamoyltransferase gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02400 amad1_02405 amad1_02405 amad1_02405 539860 540663 - acetylglutamate kinase COG0548 Acetylglutamate kinase gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02405 amad1_02410 amad1_02410 argC argC 540660 541673 - N-acetyl-gamma-glutamyl-phosphate reductase COG0002 Acetylglutamate semialdehyde dehydrogenase gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02410 amad1_02415 amad1_02415 mgsA mgsA 542252 542662 + methylglyoxal synthase COG1803 Methylglyoxal synthase gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02415 amad1_02420 amad1_02420 amad1_02420 542780 543607 - hypothetical protein COG3678 P pilus assembly/Cpx signaling pathway%2C periplasmic inhibitor/zinc-resistance associated protein gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02420 amad1_02425 amad1_02425 amad1_02425 543817 544560 + transcriptional regulatory protein CpxR COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02425 amad1_02430 amad1_02430 amad1_02430 544560 545921 + putative sensor histidine kinase protein COG0642 Signal transduction histidine kinase gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02430 amad1_02435 amad1_02435 amad1_02435 545984 546952 + lysophospholipase L2 COG2267 Lysophospholipase gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02435 amad1_02440 amad1_02440 amad1_02440 547083 547547 + putative tRNA/rRNA methyltransferase COG0219 Predicted rRNA methylase (SpoU class) gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02440 amad1_02445 amad1_02445 amad1_02445 547719 548120 + NAD(P)H-dependent glycerol-3-phosphate dehydrogenase gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02445 amad1_02450 amad1_02450 amad1_02450 548163 549179 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase COG0240 Glycerol-3-phosphate dehydrogenase gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02450 amad1_02455 amad1_02455 amad1_02455 549205 549714 - preprotein translocase subunit SecB COG1952 Preprotein translocase subunit SecB gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02455 amad1_02460 amad1_02460 amad1_02460 549777 550037 - glutaredoxin 3 GrxC COG0695 Glutaredoxin and related proteins gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02460 amad1_02465 amad1_02465 amad1_02465 550050 550475 - rhodanese domain protein COG0607 Rhodanese-related sulfurtransferase gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02465 amad1_02470 amad1_02470 amad1_02470 550726 551889 + peptidase%2C M23/M37 family protein COG4942 Membrane-bound metallopeptidase gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02470 amad1_02475 amad1_02475 amad1_02475 552065 553006 + hypothetical protein COG2861 Uncharacterized protein conserved in bacteria gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02475 amad1_02480 amad1_02480 amad1_02480 553163 553591 + MerC-like membrane protein gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02480 amad1_02485 amad1_02485 amad1_02485 553631 554320 - glycerophosphoryl diester phosphodiesterase family protein COG0584 Glycerophosphoryl diester phosphodiesterase gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02485 amad1_02490 amad1_02490 amad1_02490 554352 555227 - membrane protein COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02490 amad1_02495 amad1_02495 psd psd 555231 556208 - phosphatidylserine decarboxylase COG0688 Phosphatidylserine decarboxylase gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02495 amad1_02500 amad1_02500 amad1_02500 556375 557418 - GTPase RsgA COG1162 Predicted GTPases gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02500 amad1_02505 amad1_02505 amad1_02505 557505 558050 + oligoribonuclease COG1949 Oligoribonuclease (3'->5' exoribonuclease) gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02505 amad1_02510 amad1_02510 amad1_02510 558454 559248 + hypothetical protein gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02510 amad1_02515 amad1_02515 amad1_02515 559726 563094 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02515 amad1_02520 amad1_02520 amad1_02520 563315 563776 + Thioesterase (4HBT) superfamily enzyme gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02520 amad1_02525 amad1_02525 amad1_02525 564008 564385 + hypothetical protein COG3085 Uncharacterized protein conserved in bacteria gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02525 amad1_02530 amad1_02530 amad1_02530 564659 566377 + acetolactate synthase III large subunit COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase%2C pyruvate dehydrogenase (cytochrome)%2C glyoxylate carboligase%2C phosphonopyruvate decarboxylase] gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02530 amad1_02535 amad1_02535 amad1_02535 566377 566874 + acetolactate synthase III%2C small subunit COG0440 Acetolactate synthase%2C small (regulatory) subunit gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02535 amad1_02540 amad1_02540 amad1_02540 567026 568087 - hypothetical protein gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02540 amad1_02545 amad1_02545 amad1_02545 568271 568510 + twin arginine translocase protein A COG1826 Sec-independent protein secretion pathway components gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02545 amad1_02550 amad1_02550 amad1_02550 568510 568809 + sec-independent translocase COG1826 Sec-independent protein secretion pathway components gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02550 amad1_02555 amad1_02555 amad1_02555 568810 569565 + Sec-independent periplasmic protein translocation protein TatC COG0805 Sec-independent protein secretion pathway component TatC gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02555 amad1_02560 amad1_02560 amad1_02560 569591 570127 + hypothetical protein gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02560 amad1_02565 amad1_02565 amad1_02565 570128 570904 + Mg-dependent DNase COG0084 Mg-dependent DNase gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02565 amad1_02570 amad1_02570 amad1_02570 570916 572814 + Signaling protein with a acyltransferase and GGDEF domains COG2199 FOG: GGDEF domain gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02570 amad1_02575 amad1_02575 amad1_02575 572811 573821 + delta-aminolevulinic acid dehydratase COG0113 Delta-aminolevulinic acid dehydratase gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02575 amad1_02580 amad1_02580 amad1_02580 573910 575421 - guanosine pentaphosphatase COG0248 Exopolyphosphatase gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02580 amad1_02585 amad1_02585 amad1_02585 575458 576747 - ATP-dependent RNA helicase RhlB COG0513 Superfamily II DNA and RNA helicases gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02585 amad1_02590 amad1_02590 amad1_02590 576848 577174 + thioredoxin COG0526 Thiol-disulfide isomerase and thioredoxins gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02590 amad1_02595 amad1_02595 rho rho 577446 578711 + transcription termination factor Rho COG1158 Transcription termination factor gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02595 amad1_02600 amad1_02600 amad1_02600 578938 580236 + Peptidase M20D%2C amidohydrolase COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02600 amad1_02605 amad1_02605 amad1_02605 580259 583084 + putative signal transduction histidine kinase two-component system COG0642 Signal transduction histidine kinase gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02605 amad1_02610 amad1_02610 amad1_02610 583046 584320 - Na+/H+ antiporter NhaA COG3004 Na+/H+ antiporter gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02610 amad1_02615 amad1_02615 amad1_02615 584598 585092 + phosphoribosylaminoimidazole carboxylase catalytic subunit COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02615 amad1_02620 amad1_02620 amad1_02620 585089 586225 + phosphoribosylaminoimidazole carboxylase ATPase subunit COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02620 amad1_02625 amad1_02625 amad1_02625 586427 586969 + hypothetical protein COG2847 Uncharacterized protein conserved in bacteria gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02625 amad1_02630 amad1_02630 amad1_02630 587156 587629 + putative DNA-binding stress protein COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02630 amad1_02635 amad1_02635 amad1_02635 587811 588980 + Glucose dehydrogenase COG2133 Glucose/sorbosone dehydrogenases gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02635 amad1_02640 amad1_02640 amad1_02640 589035 591149 - putative peptidase COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02640 amad1_02645 amad1_02645 amad1_02645 591340 591672 - membrane protein COG4323 Predicted membrane protein gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02645 amad1_02650 amad1_02650 amad1_02650 591869 592738 + thioredoxin domain-containing protein COG3118 Thioredoxin domain-containing protein gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02650 amad1_02655 amad1_02655 amad1_02655 592794 593219 - hypothetical protein gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02655 amad1_02660 amad1_02660 amad1_02660 593495 594673 + hypothetical protein COG0520 Selenocysteine lyase gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02660 amad1_02665 amad1_02665 amad1_02665 594707 594889 + hypothetical protein COG3242 Uncharacterized protein conserved in bacteria gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02665 amad1_02670 amad1_02670 amad1_02670 595196 596494 + adenylosuccinate synthetase COG0104 Adenylosuccinate synthase gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02670 amad1_02675 amad1_02675 amad1_02675 596825 598231 + NAD-dependent aldehyde dehydrogenase COG1012 NAD-dependent aldehyde dehydrogenases gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02675 amad1_02680 amad1_02680 amad1_02680 598243 598671 + dioxygenase COG3565 Predicted dioxygenase of extradiol dioxygenase family gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02680 amad1_02685 amad1_02685 amad1_02685 598679 599149 + hypothetical protein COG1432 Uncharacterized conserved protein gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02685 amad1_02690 amad1_02690 amad1_02690 599263 600960 - gamma-glutamyltranspeptidase COG0405 Gamma-glutamyltransferase gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02690 amad1_02695 amad1_02695 amad1_02695 601012 602388 - Na+/H+ antiporter family protein COG1757 Na+/H+ antiporter gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02695 amad1_02700 amad1_02700 amad1_02700 602546 604609 + beta-hexosaminidase A COG1472 Beta-glucosidase-related glycosidases gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02700 amad1_02705 amad1_02705 amad1_02705 604680 605750 + mechanosensitive ion channel MscS COG0668 Small-conductance mechanosensitive channel gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02705 amad1_02710 amad1_02710 amad1_02710 605910 607439 - putative lipoprotein COG3876 Uncharacterized protein conserved in bacteria gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02710 amad1_02715 amad1_02715 amad1_02715 607458 608453 - glucokinase regulatory-like protein COG2103 Predicted sugar phosphate isomerase gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02715 amad1_02720 amad1_02720 amad1_02720 608644 609720 + alanine racemase COG0787 Alanine racemase gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02720 amad1_02725 amad1_02725 amad1_02725 610118 610822 - hypothetical protein COG1284 Uncharacterized conserved protein gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02725 amad1_02730 amad1_02730 amad1_02730 611045 611356 - hypothetical protein gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02730 amad1_02735 amad1_02735 amad1_02735 611472 611858 - glyoxalase/bleomycin resistance protein/dioxygenase COG0346 Lactoylglutathione lyase and related lyases gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02735 amad1_02740 amad1_02740 amad1_02740 612162 613280 + hypothetical protein gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02740 amad1_02745 amad1_02745 amad1_02745 613301 614098 + ABC transporter periplasmic substrate-binding protein COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02745 amad1_02750 amad1_02750 amad1_02750 614268 615536 + putative manganese transporter COG1914 Mn2+ and Fe2+ transporters of the NRAMP family gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02750 amad1_02755 amad1_02755 amad1_02755 615652 616128 + hypothetical protein gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02755 amad1_02760 amad1_02760 amad1_02760 616209 616538 - PhnA protein COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02760 amad1_02765 amad1_02765 amad1_02765 616563 617018 - GNAT family acetyltransferase COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02765 amad1_02770 amad1_02770 amad1_02770 617015 617437 - Histone acetyltransferase HPA2/related acetyltransferase COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02770 amad1_02775 amad1_02775 amad1_02775 617701 618123 + hypothetical protein COG1569 Predicted nucleic acid-binding protein%2C contains PIN domain gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02775 amad1_02780 amad1_02780 amad1_02780 618125 618346 + hypothetical protein gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02780 amad1_02785 amad1_02785 amad1_02785 618440 618685 - CopG family protein gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02785 amad1_02790 amad1_02790 amad1_02790 618675 618938 - hypothetical protein COG2929 Uncharacterized protein conserved in bacteria gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02790 amad1_02795 amad1_02795 amad1_02795 619100 619393 - XRE family transcriptional regulator COG3093 Plasmid maintenance system antidote protein gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02795 amad1_02800 amad1_02800 amad1_02800 619393 619671 - plasmid maintenance system killer protein COG3549 Plasmid maintenance system killer protein gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02800 amad1_02805 amad1_02805 amad1_02805 619820 620068 + hypothetical protein COG2161 Antitoxin of toxin-antitoxin stability system gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02805 amad1_02810 amad1_02810 amad1_02810 620058 620351 + putative relE protein COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02810 amad1_02815 amad1_02815 amad1_02815 620463 620759 - Plasmid stabilization system gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02815 amad1_02820 amad1_02820 amad1_02820 620763 620981 - hypothetical protein gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02820 amad1_02825 amad1_02825 amad1_02825 621157 621420 - plasmid stabilization system COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02825 amad1_02830 amad1_02830 amad1_02830 621407 621640 - glucose-6-phosphate isomerase gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02830 amad1_02835 amad1_02835 amad1_02835 621830 622819 + ISCps8%2C transposase COG3547 Transposase and inactivated derivatives gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02835 amad1_02840 amad1_02840 amad1_02840 623292 624338 + ISGsu4%2C transposase COG3547 Transposase and inactivated derivatives gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02840 amad1_02845 amad1_02845 amad1_02845 624800 625333 + hypothetical protein gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02845 amad1_02850 amad1_02850 amad1_02850 625430 625885 - hypothetical protein gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02850 amad1_02855 amad1_02855 amad1_02855 626001 626357 - hypothetical protein gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02855 amad1_02860 amad1_02860 amad1_02860 626498 626974 - hypothetical protein gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02860 amad1_02865 amad1_02865 amad1_02865 627107 627562 - hypothetical protein COG0178 Excinuclease ATPase subunit gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02865 amad1_02870 amad1_02870 amad1_02870 627694 628092 - hypothetical protein COG0557 Exoribonuclease R gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02870 amad1_02875 amad1_02875 amad1_02875 628156 628449 + transposase%2C IS911 COG2963 Transposase and inactivated derivatives gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02875 amad1_02880 amad1_02880 amad1_02880 628497 629324 + Integrase COG2801 Transposase and inactivated derivatives gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02880 amad1_02885 amad1_02885 amad1_02885 629753 629959 + hypothetical protein gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02885 amad1_02890 amad1_02890 amad1_02890 629956 631230 + glutamyl-tRNA reductase COG0373 Glutamyl-tRNA reductase gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02890 amad1_02895 amad1_02895 amad1_02895 631253 633040 - L-lactate permease COG1620 L-lactate permease gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02895 amad1_02900 amad1_02900 amad1_02900 633097 634653 - hypothetical protein gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02900 amad1_02905 amad1_02905 amad1_02905 634778 637327 - heme-binding protein COG2133 Glucose/sorbosone dehydrogenases gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02905 amad1_02910 amad1_02910 amad1_02910 637407 638246 - ATP-dependent DNA helicase RecQ COG0514 Superfamily II DNA helicase gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02910 amad1_02915 amad1_02915 amad1_02915 638368 639414 + ISGsu4%2C transposase COG3547 Transposase and inactivated derivatives gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02915 amad1_02920 amad1_02920 amad1_02920 639881 640255 - hypothetical protein gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02920 amad1_02935 amad1_02935 fadA fadA 642346 643509 - 3-ketoacyl-CoA thiolase COG0183 Acetyl-CoA acetyltransferase gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02935 amad1_02940 amad1_02940 fadB fadB 643528 645678 - multifunctional fatty acid oxidation complex subunit alpha COG1024 Enoyl-CoA hydratase/carnithine racemase gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02940 amad1_02945 amad1_02945 amad1_02945 646175 648229 + putative soluble lytic murein transglycosylase COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02945 amad1_02950 amad1_02950 amad1_02950 648361 649692 + proline dipeptidase COG0006 Xaa-Pro aminopeptidase gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02950 amad1_02955 amad1_02955 amad1_02955 649993 650709 + ZIP zinc transporter family protein COG0428 Predicted divalent heavy-metal cations transporter gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02955 amad1_02960 amad1_02960 amad1_02960 650914 651888 - geranylgeranyl pyrophosphate synthase COG0142 Geranylgeranyl pyrophosphate synthase gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02960 amad1_02965 amad1_02965 rplU rplU 652593 652904 + 50S ribosomal protein L21 COG0261 Ribosomal protein L21 gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02965 amad1_02970 amad1_02970 rpmA rpmA 652920 653177 + 50S ribosomal protein L27 COG0211 Ribosomal protein L27 gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02970 amad1_02975 amad1_02975 obgE obgE 653437 654615 + GTPase CgtA COG0536 Predicted GTPase gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02975 amad1_02980 amad1_02980 amad1_02980 654811 655314 + dihydrofolate reductase type I%2C trimethoprim resistance COG0262 Dihydrofolate reductase gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02980 amad1_02985 amad1_02985 amad1_02985 655493 656485 - sigma S (sigma 38) factor of RNA polymerase%2C major sigma factor during stationary phase COG0568 DNA-directed RNA polymerase%2C sigma subunit (sigma70/sigma32) gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02985 amad1_02990 amad1_02990 amad1_02990 656558 657427 - lipoprotein NlpD COG0739 Membrane proteins related to metalloendopeptidases gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02990 amad1_02995 amad1_02995 amad1_02995 657429 658007 - membrane protein%3B member of the DedA of proteins COG1238 Predicted membrane protein gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_02995 amad1_03000 amad1_03000 pcm pcm 658004 658639 - protein-L-isoaspartate O-methyltransferase COG2518 Protein-L-isoaspartate carboxylmethyltransferase gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03000 amad1_03005 amad1_03005 amad1_03005 658718 659803 - Pseudouridylate synthase COG0585 Uncharacterized conserved protein gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03005 amad1_03010 amad1_03010 ispF ispF 659800 660273 - 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase COG0245 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03010 amad1_03015 amad1_03015 amad1_03015 660288 661004 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03015 amad1_03020 amad1_03020 amad1_03020 661010 661300 - septum formation initiator family protein COG2919 Septum formation initiator gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03020 amad1_03025 amad1_03025 amad1_03025 661400 663115 - hypothetical protein gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03025 amad1_03030 amad1_03030 amad1_03030 663526 665148 - putative chemotaxis sensory protein COG0840 Methyl-accepting chemotaxis protein gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03030 amad1_03035 amad1_03035 amad1_03035 665339 665593 - hypothetical protein gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03035 amad1_03040 amad1_03040 amad1_03040 665639 669436 + bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase COG0506 Proline dehydrogenase gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03040 amad1_03045 amad1_03045 amad1_03045 669682 669849 + two-component sensor COG0642 Signal transduction histidine kinase gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03045 amad1_03050 amad1_03050 amad1_03050 669996 670730 - hypothetical protein COG3103 SH3 domain protein gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03050 amad1_03055 amad1_03055 amad1_03055 670711 672276 + hypothetical protein COG3025 Uncharacterized conserved protein gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03055 amad1_03060 amad1_03060 amad1_03060 672337 673419 + DNA mismatch repair protein COG2207 AraC-type DNA-binding domain-containing proteins gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03060 amad1_03065 amad1_03065 amad1_03065 673512 674189 - DNA mismatch repair protein COG3066 DNA mismatch repair protein gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03065 amad1_03070 amad1_03070 amad1_03070 674303 674845 + RNA pyrophosphohydrolase COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03070 amad1_03075 amad1_03075 amad1_03075 674991 677309 + phosphoenolpyruvate-protein phosphotransferase PtsP COG3605 Signal transduction protein containing GAF and PtsI domains gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03075 amad1_03080 amad1_03080 amad1_03080 677315 678121 + hypothetical protein COG0730 Predicted permeases gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03080 amad1_03085 amad1_03085 amad1_03085 678126 678929 + prolipoprotein diacylglyceryl transferase COG0682 Prolipoprotein diacylglyceryltransferase gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03085 amad1_03090 amad1_03090 amad1_03090 678948 679781 + thymidylate synthase COG0207 Thymidylate synthase gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03090 amad1_03095 amad1_03095 amad1_03095 679791 680861 + response regulator COG0784 FOG: CheY-like receiver gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03095 amad1_03100 amad1_03100 amad1_03100 680858 681835 + GGDEF domain protein COG2199 FOG: GGDEF domain gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03100 amad1_03105 amad1_03105 amad1_03105 681864 683210 - putative muropeptide transport protein COG0477 Permeases of the major facilitator superfamily gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03105 amad1_03110 amad1_03110 amad1_03110 683308 683631 - hypothetical protein gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03110 amad1_03115 amad1_03115 amad1_03115 683775 684659 - hypothetical protein gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03115 amad1_03120 amad1_03120 amad1_03120 684823 685539 - pseudouridylate synthase COG0564 Pseudouridylate synthases%2C 23S RNA-specific gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03120 amad1_03125 amad1_03125 amad1_03125 685579 688422 - ATP-dependent helicase HepA COG0553 Superfamily II DNA/RNA helicases%2C SNF2 family gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03125 amad1_03130 amad1_03130 amad1_03130 688582 688728 - hypothetical protein gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03130 amad1_03135 amad1_03135 amad1_03135 688868 690943 + sugar ABC transporter substrate-binding protein COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03135 amad1_03140 amad1_03140 amad1_03140 691247 692644 + PhoH family protein COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03140 amad1_03145 amad1_03145 amad1_03145 692774 693715 - hypothetical protein gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03145 amad1_03150 amad1_03150 amad1_03150 693867 695252 - uroporphyrin-III C-methyltransferase COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03150 amad1_03155 amad1_03155 amad1_03155 695382 697142 - ATP-dependent RNA helicase COG0513 Superfamily II DNA and RNA helicases gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03155 amad1_03160 amad1_03160 amad1_03160 697448 700222 + TPR domain-containing protein COG0457 FOG: TPR repeat gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03160 amad1_03165 amad1_03165 amad1_03165 700413 701267 - Kef-type K+ transport system NAD-binding protein COG1226 Kef-type K+ transport systems%2C predicted NAD-binding component gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03165 amad1_03170 amad1_03170 amad1_03170 701482 701634 + hypothetical protein gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03170 amad1_03175 amad1_03175 amad1_03175 701732 703120 - outer membrane channel protein COG1538 Outer membrane protein gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03175 amad1_03180 amad1_03180 amad1_03180 703417 704043 + ADP-ribose pyrophosphatase COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03180 amad1_03185 amad1_03185 amad1_03185 704040 704480 + putative cytoplasmic protein COG3151 Uncharacterized protein conserved in bacteria gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03185 amad1_03190 amad1_03190 amad1_03190 704477 705280 + 3%2C5-cyclic-nucleotide phosphodiesterase COG1409 Predicted phosphohydrolases gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03190 amad1_03195 amad1_03195 amad1_03195 705309 705890 + esterase COG3150 Predicted esterase gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03195 amad1_03200 amad1_03200 amad1_03200 706009 707904 + DNA topoisomerase IV subunit B COG0187 Type IIA topoisomerase (DNA gyrase/topo II%2C topoisomerase IV)%2C B subunit gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03200 amad1_03205 amad1_03205 amad1_03205 707936 708613 - hypothetical protein gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03205 amad1_03210 amad1_03210 amad1_03210 708850 709554 + putative enzymatic protein COG0637 Predicted phosphatase/phosphohexomutase gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03210 amad1_03215 amad1_03215 amad1_03215 709677 710972 + hypothetical protein COG5544 Predicted periplasmic lipoprotein gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03215 amad1_03220 amad1_03220 amad1_03220 711102 711434 - hypothetical protein gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03220 amad1_03225 amad1_03225 amad1_03225 711461 711652 - hypothetical protein gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03225 amad1_03230 amad1_03230 amad1_03230 711689 711880 + hypothetical protein gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03230 amad1_03235 amad1_03235 amad1_03235 711882 712907 - lysine 2%2C3-aminomutase YodO family protein COG1509 Lysine 2%2C3-aminomutase gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03235 amad1_03240 amad1_03240 amad1_03240 712944 713513 + elongation factor P COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03240 amad1_03245 amad1_03245 amad1_03245 713616 714584 + lysyl-tRNA synthetase COG2269 Truncated%2C possibly inactive%2C lysyl-tRNA synthetase (class II) gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03245 amad1_03250 amad1_03250 amad1_03250 714749 717208 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03250 amad1_03255 amad1_03255 amad1_03255 717315 717938 + hypothetical protein gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03255 amad1_03260 amad1_03260 amad1_03260 718010 718534 + acetyltransferase COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03260 amad1_03265 amad1_03265 amad1_03265 718957 721302 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03265 amad1_03270 amad1_03270 amad1_03270 721303 722532 + dipeptidase COG2355 Zn-dependent dipeptidase%2C microsomal dipeptidase homolog gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03270 amad1_03275 amad1_03275 amad1_03275 722631 723239 - peptidyl-prolyl cis-trans isomerase A COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03275 amad1_03280 amad1_03280 amad1_03280 723287 724519 - putative ribosomal RNA small subunit methyltransferase D COG2813 16S RNA G1207 methylase RsmC gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03280 amad1_03285 amad1_03285 amad1_03285 724854 725495 + alkylated DNA repair protein COG3145 Alkylated DNA repair protein gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03285 amad1_03290 amad1_03290 amad1_03290 725503 725823 + BolA protein COG0271 Stress-induced morphogen (activity unknown) gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03290 amad1_03295 amad1_03295 amad1_03295 725856 726548 + phosphoesterase PA-phosphatase-like protein COG0671 Membrane-associated phospholipid phosphatase gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03295 amad1_03310 amad1_03310 amad1_03310 727254 728594 - nitrate-and nitrite-responsive positive regulator COG3707 Response regulator with putative antiterminator output domain gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03310 amad1_03315 amad1_03315 amad1_03315 728920 729207 - hypothetical protein gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03315 amad1_03320 amad1_03320 amad1_03320 729613 731178 + Sulfate permease family protein COG0659 Sulfate permease and related transporters (MFS superfamily) gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03320 amad1_03325 amad1_03325 amad1_03325 731506 734055 + nitrite reductase COG1251 NAD(P)H-nitrite reductase gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03325 amad1_03330 amad1_03330 amad1_03330 734092 734463 + putative nitrate reductase electron transfer subunit/small subunit COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03330 amad1_03335 amad1_03335 amad1_03335 734522 737350 + nitrate reductase COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03335 amad1_03340 amad1_03340 amad1_03340 737387 738328 + multifunctional protein COG0007 Uroporphyrinogen-III methylase gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03340 amad1_03345 amad1_03345 amad1_03345 738312 739307 + hypothetical protein COG0547 Anthranilate phosphoribosyltransferase gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03345 amad1_03350 amad1_03350 amad1_03350 739492 740808 + putative chemotaxis transducer COG2202 FOG: PAS/PAC domain gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03350 amad1_03355 amad1_03355 amad1_03355 741366 742775 + nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems%2C periplasmic components gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03355 amad1_03360 amad1_03360 amad1_03360 742865 743860 + putative nitrate ABC transporter permease COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system%2C permease component gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03360 amad1_03365 amad1_03365 amad1_03365 743877 744764 + nitrate transport ATP-binding subunits C and D COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system%2C ATPase component gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03365 amad1_03370 amad1_03370 amad1_03370 744895 746115 + putative lipoprotein gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03370 amad1_03375 amad1_03375 amad1_03375 746205 746795 - hydrolase COG1896 Predicted hydrolases of HD superfamily gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03375 amad1_03380 amad1_03380 amad1_03380 746872 747504 - thiol:disulfide interchange protein DsbA COG0526 Thiol-disulfide isomerase and thioredoxins gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03380 amad1_03385 amad1_03385 amad1_03385 747939 749861 - TonB-dependent receptor COG4206 Outer membrane cobalamin receptor protein gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03385 amad1_03390 amad1_03390 amad1_03390 750318 751301 - serine/threonine protein kinase COG2334 Putative homoserine kinase type II (protein kinase fold) gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03390 amad1_03395 amad1_03395 amad1_03395 751298 752728 - 4Fe-4S ferredoxin iron-sulfur binding protein COG0348 Polyferredoxin gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03395 amad1_03400 amad1_03400 amad1_03400 753166 753537 + hypothetical protein gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03400 amad1_03405 amad1_03405 amad1_03405 753649 754194 + hypothetical protein COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03405 amad1_03410 amad1_03410 amad1_03410 754318 756078 - acyl-CoA dehydrogenase COG1960 Acyl-CoA dehydrogenases gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03410 amad1_03415 amad1_03415 amad1_03415 756330 757136 + oxidoreductase%2C short-chain dehydrogenase/reductase family protein COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03415 amad1_03420 amad1_03420 amad1_03420 757161 758036 + amidohydrolase 2 COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03420 amad1_03425 amad1_03425 amad1_03425 758053 759237 - mandelate racemase/muconate lactonizing enzyme family protein COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03425 amad1_03430 amad1_03430 amad1_03430 759316 760083 - class II aldolase/adducin-like protein COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03430 amad1_03435 amad1_03435 amad1_03435 760149 760694 - MutT/nudix family protein COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03435 amad1_03440 amad1_03440 amad1_03440 760946 761995 + HlyD family secretion protein COG0845 Membrane-fusion protein gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03440 amad1_03445 amad1_03445 amad1_03445 762007 765114 + RND family efflux transporter COG0841 Cation/multidrug efflux pump gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03445 amad1_03450 amad1_03450 amad1_03450 765613 766017 + phosphate ABC transporter substrate-binding protein gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03450 amad1_03455 amad1_03455 amad1_03455 766051 767232 + topoisomerase IV subunit B gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03455 amad1_03460 amad1_03460 amad1_03460 767375 768994 + methyl-accepting chemotaxis protein COG0840 Methyl-accepting chemotaxis protein gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03460 amad1_03465 amad1_03465 amad1_03465 769222 771057 - RNA polymerase sigma factor COG0568 DNA-directed RNA polymerase%2C sigma subunit (sigma70/sigma32) gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03465 amad1_03470 amad1_03470 amad1_03470 771525 773303 - DNA primase COG0358 DNA primase (bacterial type) gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03470 amad1_03475 amad1_03475 amad1_03475 773491 773937 - GatB/YqeY domain-containing protein COG1610 Uncharacterized conserved protein gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03475 amad1_03480 amad1_03480 amad1_03480 774223 774327 + hypothetical protein gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03480 amad1_03485 amad1_03485 rpsU rpsU 774392 774607 - 30S ribosomal protein S21 COG0828 Ribosomal protein S21 gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03485 amad1_03490 amad1_03490 amad1_03490 775108 776133 + UGMP family protein COG0533 Metal-dependent proteases with possible chaperone activity gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03490 amad1_03495 amad1_03495 amad1_03495 776195 777538 + putative type I phosphodiesterase/nucleotide pyrophosphatase protein COG1524 Uncharacterized proteins of the AP superfamily gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03495 amad1_03500 amad1_03500 amad1_03500 777528 778130 - membrane protein COG0344 Predicted membrane protein gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03500 amad1_03505 amad1_03505 amad1_03505 778415 778768 + dihydroneopterin aldolase FolB COG1539 Dihydroneopterin aldolase gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03505 amad1_03510 amad1_03510 amad1_03510 778768 779262 + 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase COG0801 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03510 amad1_03515 amad1_03515 amad1_03515 779271 780071 + undecaprenyl pyrophosphate phosphatase COG1968 Uncharacterized bacitracin resistance protein gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03515 amad1_03520 amad1_03520 amad1_03520 780228 780599 + Diadenosine tetraphosphate (Ap4A) hydrolase COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03520 amad1_03525 amad1_03525 amad1_03525 780674 782368 - hypothetical protein gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03525 amad1_03530 amad1_03530 amad1_03530 782782 783618 + putative signal transduction protein COG1639 Predicted signal transduction protein gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03530 amad1_03535 amad1_03535 amad1_03535 783739 784929 - benzoate transport protein COG3135 Uncharacterized protein involved in benzoate metabolism gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03535 amad1_03540 amad1_03540 amad1_03540 785116 785679 + transcriptional regulator COG1396 Predicted transcriptional regulators gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03540 amad1_03545 amad1_03545 rdgC rdgC 785869 786780 - recombination associated protein COG2974 DNA recombination-dependent growth factor C gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03545 amad1_03550 amad1_03550 amad1_03550 786928 788601 - Signal transduction histidine kinase COG0642 Signal transduction histidine kinase gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03550 amad1_03555 amad1_03555 amad1_03555 788909 789598 + putative DNA-binding response regulator PhoB COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03555 amad1_03560 amad1_03560 amad1_03560 789698 790999 + phosphate regulon sensor protein PhoR COG0642 Signal transduction histidine kinase gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03560 amad1_03565 amad1_03565 amad1_03565 790999 792069 + putative phosphate ABC transporter COG0226 ABC-type phosphate transport system%2C periplasmic component gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03565 amad1_03570 amad1_03570 amad1_03570 792439 795219 + putative lipoprotein gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03570 amad1_03575 amad1_03575 amad1_03575 795337 797985 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03575 amad1_03580 amad1_03580 amad1_03580 798162 798920 + TonB system biopolymer transport component gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03580 amad1_03585 amad1_03585 amad1_03585 798934 800298 + putative Tol protein COG4175 ABC-type proline/glycine betaine transport system%2C ATPase component gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03585 amad1_03590 amad1_03590 amad1_03590 800301 800819 + TonB system biopolymer transport component COG0811 Biopolymer transport proteins gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03590 amad1_03595 amad1_03595 amad1_03595 800852 801259 + biopolymer transport protein COG0848 Biopolymer transport protein gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03595 amad1_03600 amad1_03600 amad1_03600 801263 801871 + putative TonB2 protein COG0810 Periplasmic protein TonB%2C links inner and outer membranes gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03600 amad1_03605 amad1_03605 amad1_03605 801878 803203 + hypothetical protein COG0457 FOG: TPR repeat gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03605 amad1_03610 amad1_03610 amad1_03610 803331 804407 - two-component system response regulator (hybrid family) protein COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03610 amad1_03615 amad1_03615 amad1_03615 804391 807279 - PAS signal transduction protein COG0642 Signal transduction histidine kinase gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03615 amad1_03620 amad1_03620 amad1_03620 807518 809086 - long-chain-fatty-acid--CoA ligase COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03620 amad1_03625 amad1_03625 amad1_03625 809196 809672 - hypothetical protein COG0591 Na+/proline symporter gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03625 amad1_03630 amad1_03630 amad1_03630 809800 811014 + dehydrogenase COG2133 Glucose/sorbosone dehydrogenases gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03630 amad1_03635 amad1_03635 amad1_03635 811402 814212 + bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase COG1049 Aconitase B gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03635 amad1_03640 amad1_03640 amad1_03640 814289 815293 - phosphorylase family protein COG0775 Nucleoside phosphorylase gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03640 amad1_03645 amad1_03645 amad1_03645 815697 815981 + DNA ligase gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03645 amad1_03650 amad1_03650 amad1_03650 816127 817080 + DNA ligase COG1793 ATP-dependent DNA ligase gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03650 amad1_03655 amad1_03655 amad1_03655 817443 820055 + bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase COG1049 Aconitase B gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03655 amad1_03660 amad1_03660 amad1_03660 820128 820577 + Exported protein COG1430 Uncharacterized conserved protein gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03660 amad1_03665 amad1_03665 amad1_03665 820637 821986 + aspartate kinase III COG0527 Aspartokinases gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03665 amad1_03670 amad1_03670 amad1_03670 822054 824078 - methyl-accepting chemotaxis protein COG0840 Methyl-accepting chemotaxis protein gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03670 amad1_03675 amad1_03675 apaH apaH 824366 825193 - diadenosine tetraphosphatase COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03675 amad1_03680 amad1_03680 apaG apaG 825201 825575 - CO2+/MG2+ efflux protein ApaG COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03680 amad1_03685 amad1_03685 amad1_03685 825582 826409 - dimethyladenosine transferase COG0030 Dimethyladenosine transferase (rRNA methylation) gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03685 amad1_03690 amad1_03690 amad1_03690 826406 827392 - 4-hydroxythreonine-4-phosphate dehydrogenase COG1995 Pyridoxal phosphate biosynthesis protein gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03690 amad1_03695 amad1_03695 amad1_03695 827406 828689 - survival protein surA COG0760 Parvulin-like peptidyl-prolyl isomerase gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03695 amad1_03700 amad1_03700 amad1_03700 828749 830983 - organic solvent tolerance protein COG1452 Organic solvent tolerance protein OstA gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03700 amad1_03705 amad1_03705 amad1_03705 831473 832339 + Dna-J like membrane chaperone protein COG1076 DnaJ-domain-containing proteins 1 gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03705 amad1_03710 amad1_03710 amad1_03710 832340 833266 + tyrosine recombinase COG4974 Site-specific recombinase XerD gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03710 amad1_03715 amad1_03715 amad1_03715 833588 834310 + thiol:disulfide interchange protein DsbC COG1651 Protein-disulfide isomerase gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03715 amad1_03720 amad1_03720 amad1_03720 834529 836250 + single-stranded-DNA-specific exonuclease RecJ COG0608 Single-stranded DNA-specific exonuclease gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03720 amad1_03725 amad1_03725 amad1_03725 836375 836656 + hypothetical protein gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03725 amad1_03730 amad1_03730 amad1_03730 836780 837484 + DNA repair protein RecO COG1381 Recombinational DNA repair protein (RecF pathway) gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03730 amad1_03735 amad1_03735 amad1_03735 837669 838406 + pyridoxine 5'-phosphate synthase COG0854 Pyridoxal phosphate biosynthesis protein gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03735 amad1_03740 amad1_03740 acpS acpS 838424 838804 + 4'-phosphopantetheinyl transferase COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03740 amad1_03745 amad1_03745 rumA rumA 838955 840403 + 23S rRNA m(5)U1939 methyltransferase COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03745 amad1_03750 amad1_03750 relA relA 840416 842599 + (p)ppGpp synthetase I/GTP pyrophosphokinase COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03750 amad1_03755 amad1_03755 amad1_03755 842577 843542 + MazG protein COG1694 Predicted pyrophosphatase gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03755 amad1_03760 amad1_03760 amad1_03760 843854 844222 + hypothetical protein COG2832 Uncharacterized protein conserved in bacteria gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03760 amad1_03765 amad1_03765 amad1_03765 844308 845474 - Hydroxymethylglutaryl-coenzyme A reductase COG1257 Hydroxymethylglutaryl-CoA reductase gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03765 amad1_03770 amad1_03770 amad1_03770 845682 846329 - TPR repeats containing protein COG0457 FOG: TPR repeat gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03770 amad1_03775 amad1_03775 amad1_03775 846518 847219 - TPR repeats containing protein gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03775 amad1_03780 amad1_03780 amad1_03780 847235 848080 - short-chain alcohol dehydrogenase-like protein COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03780 amad1_03785 amad1_03785 amad1_03785 848146 848817 - putative TenA family transcriptional activator gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03785 amad1_03790 amad1_03790 amad1_03790 848821 850335 - putative long-chain-fatty-acid-CoA ligase COG1022 Long-chain acyl-CoA synthetases (AMP-forming) gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03790 amad1_03795 amad1_03795 amad1_03795 850325 851068 - hypothetical protein gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03795 amad1_03800 amad1_03800 amad1_03800 851184 852995 - glycosyl transferase family protein COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03800 amad1_03805 amad1_03805 amad1_03805 852992 853669 - hypothetical protein COG0398 Uncharacterized conserved protein gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03805 amad1_03810 amad1_03810 amad1_03810 853659 854396 - glycosyl transferase family protein COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03810 amad1_03815 amad1_03815 amad1_03815 854487 855188 - hypothetical protein gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03815 amad1_03820 amad1_03820 amad1_03820 855185 855949 - FTR1 family iron permease COG0672 High-affinity Fe2+/Pb2+ permease gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03820 amad1_03825 amad1_03825 amad1_03825 855939 856304 - hypothetical protein gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03825 amad1_03830 amad1_03830 amad1_03830 856288 857577 - sensor histidine kinase COG0642 Signal transduction histidine kinase gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03830 amad1_03835 amad1_03835 amad1_03835 857579 858244 - response regulator COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03835 amad1_03840 amad1_03840 amad1_03840 858319 859218 - hypothetical protein gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03840 amad1_03845 amad1_03845 rplM rplM 859490 859918 + 50S ribosomal protein L13 COG0102 Ribosomal protein L13 gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03845 amad1_03850 amad1_03850 amad1_03850 859931 860323 + 30S ribosomal protein S9 COG0103 Ribosomal protein S9 gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03850 amad1_03855 amad1_03855 amad1_03855 860761 861393 + Ubiquinol-cytochrome C reductase iron-sulfur subunit COG0723 Rieske Fe-S protein gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03855 amad1_03860 amad1_03860 amad1_03860 861395 862660 + ubiquinol-cytochrome c reductase%2C cytochrome B COG1290 Cytochrome b subunit of the bc complex gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03860 amad1_03865 amad1_03865 amad1_03865 862657 863391 + cytochrome c1 COG2857 Cytochrome c1 gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03865 amad1_03870 amad1_03870 sspA sspA 863559 864191 + stringent starvation protein A COG0625 Glutathione S-transferase gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03870 amad1_03875 amad1_03875 amad1_03875 864188 864661 + stringent starvation protein B COG2969 Stringent starvation protein B gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03875 amad1_03880 amad1_03880 amad1_03880 865000 866358 - magnesium transporter COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03880 amad1_03885 amad1_03885 amad1_03885 866530 866802 - phosphocarrier protein NPR COG1925 Phosphotransferase system%2C HPr-related proteins gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03885 amad1_03890 amad1_03890 amad1_03890 866802 867647 - glmZ(sRNA)-inactivating NTPase COG1660 Predicted P-loop-containing kinase gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03890 amad1_03895 amad1_03895 amad1_03895 867736 868179 - nitrogen regulatory IIA protein COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03895 amad1_03900 amad1_03900 amad1_03900 868193 868480 - ribosomal subunit interface protein COG1544 Ribosome-associated protein Y (PSrp-1) gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03900 amad1_03905 amad1_03905 amad1_03905 868511 869992 - RNA polymerase sigma-54 factor COG1508 DNA-directed RNA polymerase specialized sigma subunit%2C sigma54 homolog gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03905 amad1_03910 amad1_03910 amad1_03910 870066 870791 - ABC transporter ATPase COG1137 ABC-type (unclassified) transport system%2C ATPase component gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03910 amad1_03915 amad1_03915 amad1_03915 870794 871348 - OstA-like protein COG1934 Uncharacterized protein conserved in bacteria gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03915 amad1_03920 amad1_03920 amad1_03920 871317 871895 - hypothetical protein COG3117 Uncharacterized protein conserved in bacteria gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03920 amad1_03925 amad1_03925 amad1_03925 871892 872440 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase COG1778 Low specificity phosphatase (HAD superfamily) gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03925 amad1_03930 amad1_03930 amad1_03930 872441 873421 - arabinose 5-phosphate isomerase COG0794 Predicted sugar phosphate isomerase involved in capsule formation gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03930 amad1_03935 amad1_03935 amad1_03935 873424 874380 - sodium-calcium exchanger COG0530 Ca2+/Na+ antiporter gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03935 amad1_03940 amad1_03940 amad1_03940 874964 875764 + putative ABC transporter ATP-binding protein COG1127 ABC-type transport system involved in resistance to organic solvents%2C ATPase component gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03940 amad1_03945 amad1_03945 amad1_03945 875761 876537 + putative ABC transporter membrane protein COG0767 ABC-type transport system involved in resistance to organic solvents%2C permease component gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03945 amad1_03950 amad1_03950 amad1_03950 876547 877020 + mce family protein COG1463 ABC-type transport system involved in resistance to organic solvents%2C periplasmic component gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03950 amad1_03955 amad1_03955 amad1_03955 877139 877804 + toluene tolerance family protein COG2854 ABC-type transport system involved in resistance to organic solvents%2C auxiliary component gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03955 amad1_03960 amad1_03960 amad1_03960 877801 878109 + STAS domain-containing protein COG3113 Predicted NTP binding protein (contains STAS domain) gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03960 amad1_03965 amad1_03965 amad1_03965 878139 878396 + BolA-like protein COG5007 Predicted transcriptional regulator%2C BolA superfamily gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03965 amad1_03970 amad1_03970 amad1_03970 878409 879671 + UDP-N-acetylglucosamine 1-carboxyvinyltransferase COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03970 amad1_03975 amad1_03975 amad1_03975 879742 880812 - serine protease DegS COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C contain C-terminal PDZ domain gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03975 amad1_03980 amad1_03980 amad1_03980 881111 882472 - protease DO COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C contain C-terminal PDZ domain gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03980 amad1_03985 amad1_03985 amad1_03985 882561 882998 - hypothetical protein gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03985 amad1_03990 amad1_03990 amad1_03990 883254 884351 + ATPase COG1485 Predicted ATPase gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03990 amad1_03995 amad1_03995 amad1_03995 884579 885301 + hypothetical protein COG0217 Uncharacterized conserved protein gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_03995 amad1_04000 amad1_04000 amad1_04000 885433 885864 - globin family protein COG2346 Truncated hemoglobins gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04000 amad1_04005 amad1_04005 amad1_04005 885877 886824 - hypothetical protein gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04005 amad1_04010 amad1_04010 amad1_04010 887272 887649 + hypothetical protein gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04010 amad1_04015 amad1_04015 amad1_04015 887734 890310 + bifunctional preprotein translocase subunit SecD/SecF COG0342 Preprotein translocase subunit SecD gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04015 amad1_04020 amad1_04020 amad1_04020 890471 891934 + potassium/proton antiporter COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04020 amad1_04025 amad1_04025 amad1_04025 892425 894818 - TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04025 amad1_04030 amad1_04030 amad1_04030 895209 896153 + drug/metabolite transporter permease COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04030 amad1_04035 amad1_04035 amad1_04035 896130 896324 - hypothetical protein gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04035 amad1_04040 amad1_04040 amad1_04040 896421 899300 - multi-sensor hybrid histidine kinase COG2202 FOG: PAS/PAC domain gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04040 amad1_04045 amad1_04045 amad1_04045 899300 900478 - extracellular ligand-binding receptor COG0683 ABC-type branched-chain amino acid transport systems%2C periplasmic component gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04045 amad1_04050 amad1_04050 amad1_04050 900800 901303 + hypothetical protein gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04050 amad1_04055 amad1_04055 amad1_04055 901342 901812 - hypothetical protein gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04055 amad1_04060 amad1_04060 amad1_04060 902056 903201 - S-adenosylmethionine synthetase COG0192 S-adenosylmethionine synthetase gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04060 amad1_04065 amad1_04065 amad1_04065 903607 905598 + transketolase 1 COG0021 Transketolase gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04065 amad1_04070 amad1_04070 amad1_04070 905617 906627 + D-erythrose 4-phosphate dehydrogenase COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04070 amad1_04075 amad1_04075 pgk pgk 906738 907913 + phosphoglycerate kinase COG0126 3-phosphoglycerate kinase gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04075 amad1_04080 amad1_04080 amad1_04080 908215 909114 + fructose-1%2C6-bisphosphate aldolase COG3588 Fructose-1%2C6-bisphosphate aldolase gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04080 amad1_04085 amad1_04085 amad1_04085 909280 909594 + hypothetical protein gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04085 amad1_04090 amad1_04090 amad1_04090 909828 910916 + secretion protein HlyD COG0845 Membrane-fusion protein gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04090 amad1_04095 amad1_04095 amad1_04095 910927 914109 + hydrophobe/amphiphile efflux-1 (HAE1) family transporter COG0841 Cation/multidrug efflux pump gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04095 amad1_04100 amad1_04100 amad1_04100 914102 915607 + NodT family RND efflux system outer membrane lipoprotein COG1538 Outer membrane protein gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04100 amad1_04105 amad1_04105 amad1_04105 915793 917901 + acylaminoacyl-peptidase COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04105 amad1_04110 amad1_04110 amad1_04110 917987 919549 - putative exopolyphosphatase COG0248 Exopolyphosphatase gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04110 amad1_04115 amad1_04115 amad1_04115 919566 921638 - polyphosphate kinase COG0855 Polyphosphate kinase gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04115 amad1_04120 amad1_04120 amad1_04120 921781 922287 - ACT domain protein COG2716 Glycine cleavage system regulatory protein gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04120 amad1_04125 amad1_04125 amad1_04125 922497 924680 + putative phosphate ABC transporter permease COG4590 ABC-type uncharacterized transport system%2C permease component gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04125 amad1_04130 amad1_04130 amad1_04130 924673 926232 + phosphate ABC transporter permease COG0581 ABC-type phosphate transport system%2C permease component gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04130 amad1_04135 amad1_04135 amad1_04135 926250 927056 + phosphate transporter ATP-binding protein COG1117 ABC-type phosphate transport system%2C ATPase component gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04135 amad1_04140 amad1_04140 amad1_04140 927141 927857 + transcriptional regulator PhoU COG0704 Phosphate uptake regulator gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04140 amad1_04145 amad1_04145 amad1_04145 928198 929469 + Phosphate permease COG0306 Phosphate/sulphate permeases gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04145 amad1_04150 amad1_04150 amad1_04150 929571 930548 - universal stress protein UspA COG0589 Universal stress protein UspA and related nucleotide-binding proteins gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04150 amad1_04155 amad1_04155 amad1_04155 930879 931787 + LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04155 amad1_04160 amad1_04160 amad1_04160 931864 932379 - hypothetical protein gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04160 amad1_04165 amad1_04165 amad1_04165 932473 933129 - putative hemolysin III COG1272 Predicted membrane protein%2C hemolysin III homolog gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04165 amad1_04170 amad1_04170 amad1_04170 933318 933758 - putative transcriptional regulator OhrR COG1846 Transcriptional regulators gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04170 amad1_04175 amad1_04175 amad1_04175 933896 934324 + putative organic hydroperoxide resistance protein COG1764 Predicted redox protein%2C regulator of disulfide bond formation gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04175 amad1_04180 amad1_04180 amad1_04180 934578 936509 + putative cold-active aminopeptidase COG0308 Aminopeptidase N gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04180 amad1_04185 amad1_04185 amad1_04185 936779 937315 + thioredoxin peroxidase COG1225 Peroxiredoxin gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04185 amad1_04190 amad1_04190 amad1_04190 937438 938040 - hypothetical protein COG1739 Uncharacterized conserved protein gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04190 amad1_04195 amad1_04195 amad1_04195 938369 938692 + hypothetical protein gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04195 amad1_04200 amad1_04200 amad1_04200 938813 940111 - Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer COG2202 FOG: PAS/PAC domain gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04200 amad1_04205 amad1_04205 amad1_04205 940389 941579 + hypothetical protein gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04205 amad1_04210 amad1_04210 amad1_04210 941845 943323 + exonuclease subunit SbcD COG0420 DNA repair exonuclease gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04210 amad1_04215 amad1_04215 amad1_04215 943326 947051 + exonuclease SbcC COG0419 ATPase involved in DNA repair gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04215 amad1_04230 amad1_04230 amad1_04230 948712 949932 + serine/threonine transporter SstT COG3633 Na+/serine symporter gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04230 amad1_04235 amad1_04235 amad1_04235 950033 951037 - arginase family protein COG0010 Arginase/agmatinase/formimionoglutamate hydrolase%2C arginase family gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04235 amad1_04240 amad1_04240 amad1_04240 951030 952289 - imidazolonepropionase COG1228 Imidazolonepropionase and related amidohydrolases gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04240 amad1_04245 amad1_04245 amad1_04245 952450 953190 + histidine utilization repressor COG2188 Transcriptional regulators gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04245 amad1_04250 amad1_04250 amad1_04250 953255 954946 + urocanate hydratase COG2987 Urocanate hydratase gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04250 amad1_04255 amad1_04255 amad1_04255 954949 956565 + histidine ammonia-lyase COG2986 Histidine ammonia-lyase gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04255 amad1_04260 amad1_04260 amad1_04260 956648 957160 + creA protein COG3045 Uncharacterized protein conserved in bacteria gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04260 amad1_04265 amad1_04265 amad1_04265 957212 957361 + hypothetical protein gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04265 amad1_04270 amad1_04270 amad1_04270 957263 958030 - hypothetical protein COG3713 Outer membrane protein V gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04270 amad1_04275 amad1_04275 amad1_04275 958110 958610 - hypothetical protein gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04275 amad1_04280 amad1_04280 amad1_04280 959023 959811 + hypothetical protein gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04280 amad1_04285 amad1_04285 amad1_04285 959891 961483 - ABC transporter ATP-binding protein COG0488 ATPase components of ABC transporters with duplicated ATPase domains gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04285 amad1_04290 amad1_04290 amad1_04290 961857 961979 + hypothetical protein gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04290 amad1_04295 amad1_04295 amad1_04295 962049 962429 + hypothetical protein COG0145 N-methylhydantoinase A/acetone carboxylase%2C beta subunit gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04295 amad1_04300 amad1_04300 amad1_04300 962434 963360 + TPR repeat 2396 protein COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain an N-terminal double-glycine peptidase domain gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04300 amad1_04305 amad1_04305 amad1_04305 963440 963850 + hypothetical protein gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04305 amad1_04310 amad1_04310 amad1_04310 964464 965600 + mechanosensitive ion channel MscS COG0668 Small-conductance mechanosensitive channel gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04310 amad1_04315 amad1_04315 amad1_04315 965725 966303 - Outer membrane protein%2C porin family gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04315 amad1_04320 amad1_04320 amad1_04320 966480 967403 - transporter COG0477 Permeases of the major facilitator superfamily gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04320 amad1_04325 amad1_04325 amad1_04325 967495 967788 + transposase%2C IS911 COG2963 Transposase and inactivated derivatives gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04325 amad1_04330 amad1_04330 amad1_04330 967836 968663 + Integrase COG2801 Transposase and inactivated derivatives gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04330 amad1_04335 amad1_04335 amad1_04335 968692 968916 - transporter COG0477 Permeases of the major facilitator superfamily gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04335 amad1_04340 amad1_04340 amad1_04340 969391 969585 + hypothetical protein gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04340 amad1_04345 amad1_04345 amad1_04345 969960 970133 - hypothetical protein gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04345 amad1_04350 amad1_04350 amad1_04350 970160 970879 - Zeta toxin COG1222 ATP-dependent 26S proteasome regulatory subunit gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04350 amad1_04355 amad1_04355 amad1_04355 971494 972813 + phage integrase COG0582 Integrase gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04355 amad1_04360 amad1_04360 amad1_04360 972973 974382 - transposase-like protein COG3436 Transposase and inactivated derivatives gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04360 amad1_04365 amad1_04365 amad1_04365 974630 975328 + hypothetical protein gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04365 amad1_04370 amad1_04370 amad1_04370 975328 975801 + hypothetical protein gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04370 amad1_04375 amad1_04375 amad1_04375 976292 976780 + hypothetical protein gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04375 amad1_04380 amad1_04380 amad1_04380 976936 977157 + hypothetical protein gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04380 amad1_04385 amad1_04385 amad1_04385 977235 978233 + putative replication initiation factor COG2946 Putative phage replication protein RstA gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04385 amad1_04390 amad1_04390 amad1_04390 978230 979405 + phage integrase COG0582 Integrase gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04390 amad1_04395 amad1_04395 amad1_04395 979475 980212 - hypothetical protein gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04395 amad1_04400 amad1_04400 amad1_04400 980435 980791 + transposase IS3/IS911 family protein COG2963 Transposase and inactivated derivatives gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04400 amad1_04405 amad1_04405 amad1_04405 980778 982295 + transposase COG4584 Transposase and inactivated derivatives gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04405 amad1_04410 amad1_04410 amad1_04410 982304 983050 + putative transposase subunit COG1484 DNA replication protein gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04410 amad1_04415 amad1_04415 amad1_04415 983148 983639 + transposase IS3/IS911 family protein COG2963 Transposase and inactivated derivatives gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04415 amad1_04420 amad1_04420 amad1_04420 983852 984679 + putative transposase COG2801 Transposase and inactivated derivatives gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04420 amad1_04425 amad1_04425 amad1_04425 984695 985294 - hypothetical protein gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04425 amad1_04430 amad1_04430 amad1_04430 986395 987894 + N-6 DNA methylase COG0286 Type I restriction-modification system methyltransferase subunit gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04430 amad1_04435 amad1_04435 amad1_04435 987891 989387 + N-6 DNA methylase COG0286 Type I restriction-modification system methyltransferase subunit gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04435 amad1_04440 amad1_04440 amad1_04440 989377 990528 + restriction modification system DNA specificity subunit COG0732 Restriction endonuclease S subunits gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04440 amad1_04445 amad1_04445 amad1_04445 990533 993583 + HsdR family type I site-specific deoxyribonuclease COG0610 Type I site-specific restriction-modification system%2C R (restriction) subunit and related helicases gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04445 amad1_04450 amad1_04450 amad1_04450 993583 994083 + hypothetical protein gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04450 amad1_04455 amad1_04455 amad1_04455 994076 994813 + hypothetical protein gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04455 amad1_04460 amad1_04460 amad1_04460 994971 995933 + RNA-dependent DNA polymerase COG3344 Retron-type reverse transcriptase gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04460 amad1_04465 amad1_04465 amad1_04465 996708 997517 + hypothetical protein gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04465 amad1_04470 amad1_04470 amad1_04470 997816 998145 + hypothetical protein COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04470 amad1_04475 amad1_04475 amad1_04475 998505 998831 + hypothetical protein gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04475 amad1_04480 amad1_04480 amad1_04480 998978 999739 + Response regulator of the LytR/AlgR family protein COG3279 Response regulator of the LytR/AlgR family gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04480 amad1_04485 amad1_04485 amad1_04485 999913 1000326 + LrgA protein gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04485 amad1_04490 amad1_04490 amad1_04490 1000319 1001029 + LrgB-like protein COG1346 Putative effector of murein hydrolase gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04490 amad1_04495 amad1_04495 amad1_04495 1001310 1002305 + response regulator COG0784 FOG: CheY-like receiver gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04495 amad1_04500 amad1_04500 amad1_04500 1002305 1002796 + sensory box/GGDEF protein COG2202 FOG: PAS/PAC domain gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04500 amad1_04505 amad1_04505 amad1_04505 1002887 1004656 + hypothetical protein gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04505 amad1_04510 amad1_04510 amad1_04510 1004659 1005222 + putative Fimh-like protein gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04510 amad1_04515 amad1_04515 amad1_04515 1005480 1006274 + hypothetical protein gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04515 amad1_04520 amad1_04520 amad1_04520 1006399 1007424 - putative oxygen-independent coproporphyrinogen III oxidase COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04520 amad1_04525 amad1_04525 amad1_04525 1007531 1008133 - dITP/XTP pyrophosphatase COG0127 Xanthosine triphosphate pyrophosphatase gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04525 amad1_04530 amad1_04530 amad1_04530 1008344 1009570 - ATP-dependent RNA helicase SrmB COG0513 Superfamily II DNA and RNA helicases gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04530 amad1_04535 amad1_04535 amad1_04535 1009721 1010914 - tRNA nucleotidyltransferase COG0617 tRNA nucleotidyltransferase/poly(A) polymerase gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04535 amad1_04540 amad1_04540 amad1_04540 1011134 1012045 + putative ATPase and membrane protein COG3267 Type II secretory pathway%2C component ExeA (predicted ATPase) gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04540 amad1_04545 amad1_04545 amad1_04545 1012038 1013285 + General secretion pathway protein B gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04545 amad1_04550 amad1_04550 amad1_04550 1013448 1014635 - metal-dependent phosphohydrolase domain-containing protein COG2206 HD-GYP domain gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04550 amad1_04555 amad1_04555 leuD leuD 1014913 1015518 - isopropylmalate isomerase small subunit COG0066 3-isopropylmalate dehydratase small subunit gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04555 amad1_04560 amad1_04560 amad1_04560 1015522 1016922 - isopropylmalate isomerase large subunit COG0065 3-isopropylmalate dehydratase large subunit gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04560 amad1_04565 amad1_04565 amad1_04565 1016932 1018029 - 3-isopropylmalate dehydrogenase COG0473 Isocitrate/isopropylmalate dehydrogenase gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04565 amad1_04570 amad1_04570 amad1_04570 1018030 1019589 - 2-isopropylmalate synthase COG0119 Isopropylmalate/homocitrate/citramalate synthases gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04570 amad1_04575 amad1_04575 amad1_04575 1020019 1020759 - hypothetical protein gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04575 amad1_04580 amad1_04580 amad1_04580 1020904 1022196 - enolase COG0148 Enolase gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04580 amad1_04585 amad1_04585 pyrG pyrG 1022256 1023887 - CTP synthetase COG0504 CTP synthase (UTP-ammonia lyase) gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04585 amad1_04590 amad1_04590 amad1_04590 1024024 1026615 - DNA mismatch repair protein MutS COG0249 Mismatch repair ATPase (MutS family) gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04590 amad1_04595 amad1_04595 amad1_04595 1026776 1027315 + CinA-like protein COG1546 Uncharacterized protein (competence- and mitomycin-induced) gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04595 amad1_04600 amad1_04600 amad1_04600 1027436 1028482 + recombinase A COG0468 RecA/RadA recombinase gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04600 amad1_04605 amad1_04605 amad1_04605 1028787 1029608 + sodium ABC exporter ATP-binding protein COG4555 ABC-type Na+ transport system%2C ATPase component gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04605 amad1_04610 amad1_04610 amad1_04610 1029592 1030788 + Na+ efflux pump ABC transporter permease COG1668 ABC-type Na+ efflux pump%2C permease component gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04610 amad1_04615 amad1_04615 amad1_04615 1030943 1031260 - hypothetical protein COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04615 amad1_04620 amad1_04620 amad1_04620 1031272 1033857 - hypothetical protein gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04620 amad1_04625 amad1_04625 amad1_04625 1034079 1034789 + ATP binding protein of heme exporter A COG4133 ABC-type transport system involved in cytochrome c biogenesis%2C ATPase component gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04625 amad1_04630 amad1_04630 amad1_04630 1034789 1035454 + heme ABC transporter permease subunit CcmB COG2386 ABC-type transport system involved in cytochrome c biogenesis%2C permease component gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04630 amad1_04635 amad1_04635 amad1_04635 1035454 1036236 + heme exporter protein C COG0755 ABC-type transport system involved in cytochrome c biogenesis%2C permease component gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04635 amad1_04640 amad1_04640 amad1_04640 1036238 1036453 + heme exporter protein CcmD COG3114 Heme exporter protein D gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04640 amad1_04645 amad1_04645 amad1_04645 1036500 1036994 + cytochrome c-type biogenesis protein CcmE COG2332 Cytochrome c-type biogenesis protein CcmE gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04645 amad1_04650 amad1_04650 amad1_04650 1036998 1039055 + Cytochrome c biogenesis factor COG1138 Cytochrome c biogenesis factor gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04650 amad1_04655 amad1_04655 amad1_04655 1039055 1039714 + thiol:disulfide interchange protein DsbE COG0526 Thiol-disulfide isomerase and thioredoxins gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04655 amad1_04660 amad1_04660 amad1_04660 1039711 1040241 + Cytochrome c-type biogenesis protein CcmH COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04660 amad1_04665 amad1_04665 amad1_04665 1040238 1041524 + putative cytochrome c-type biogenesis protein COG4235 Cytochrome c biogenesis factor gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04665 amad1_04670 amad1_04670 amad1_04670 1041527 1042450 + surface lipoprotein COG2853 Surface lipoprotein gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04670 amad1_04675 amad1_04675 amad1_04675 1042603 1043625 - UDP-glucose 4-epimerase COG1087 UDP-glucose 4-epimerase gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04675 amad1_04680 amad1_04680 amad1_04680 1043622 1043924 - hypothetical protein gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04680 amad1_04685 amad1_04685 amad1_04685 1044024 1045544 - putative proton-dependent peptide transporter COG3104 Dipeptide/tripeptide permease gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04685 amad1_04690 amad1_04690 amad1_04690 1045765 1046883 - putative capsule polysaccharide export system inner membrane protein COG3524 Capsule polysaccharide export protein gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04690 amad1_04695 amad1_04695 amad1_04695 1046895 1047569 - KpsT protein COG1134 ABC-type polysaccharide/polyol phosphate transport system%2C ATPase component gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04695 amad1_04700 amad1_04700 amad1_04700 1047566 1048345 - KpsM protein COG1682 ABC-type polysaccharide/polyol phosphate export systems%2C permease component gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04700 amad1_04705 amad1_04705 amad1_04705 1048348 1050177 - capsular polysaccharide transport protein COG1596 Periplasmic protein involved in polysaccharide export gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04705 amad1_04710 amad1_04710 amad1_04710 1050182 1050580 - hypothetical protein gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04710 amad1_04715 amad1_04715 amad1_04715 1051074 1052135 + UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04715 amad1_04720 amad1_04720 amad1_04720 1052248 1053135 + glycosyltransferase COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04720 amad1_04725 amad1_04725 amad1_04725 1053132 1054010 + rhamnosyltransferase COG1216 Predicted glycosyltransferases gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04725 amad1_04730 amad1_04730 amad1_04730 1054301 1055191 + putative glucose-1-phosphate uridylyltransferase COG1210 UDP-glucose pyrophosphorylase gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04730 amad1_04735 amad1_04735 amad1_04735 1055271 1055585 - late competence protein COG1555 DNA uptake protein and related DNA-binding proteins gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04735 amad1_04740 amad1_04740 amad1_04740 1055959 1056966 - isocitrate dehydrogenase COG0473 Isocitrate/isopropylmalate dehydrogenase gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04740 amad1_04745 amad1_04745 amad1_04745 1057215 1058825 - putative signal transduction protein gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04745 amad1_04750 amad1_04750 amad1_04750 1058837 1059211 - SmpA/OmlA family lipoprotein COG2913 Small protein A (tmRNA-binding) gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04750 amad1_04755 amad1_04755 amad1_04755 1059387 1060718 - hypothetical protein COG1611 Predicted Rossmann fold nucleotide-binding protein gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04755 amad1_04760 amad1_04760 amad1_04760 1060763 1062319 - GGDEF domain protein COG2199 FOG: GGDEF domain gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04760 amad1_04765 amad1_04765 queF queF 1062396 1063256 - 7-cyano-7-deazaguanine reductase COG2904 Uncharacterized protein conserved in bacteria gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04765 amad1_04770 amad1_04770 amad1_04770 1063404 1063949 + SecY interacting protein Syd gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04770 amad1_04775 amad1_04775 amad1_04775 1063972 1064274 - hypothetical protein gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04775 amad1_04780 amad1_04780 amad1_04780 1064643 1065008 + putative lipoprotein gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04780 amad1_04785 amad1_04785 amad1_04785 1065226 1065873 + acetyltransferase COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04785 amad1_04790 amad1_04790 amad1_04790 1066847 1067149 - hypothetical protein gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04790 amad1_04795 amad1_04795 amad1_04795 1067151 1068200 - hypothetical protein gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04795 amad1_04800 amad1_04800 amad1_04800 1068452 1068820 + hypothetical protein COG3098 Uncharacterized protein conserved in bacteria gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04800 amad1_04805 amad1_04805 amad1_04805 1068817 1069614 + pseudouridylate synthase%2C 23S RNA-specific COG0564 Pseudouridylate synthases%2C 23S RNA-specific gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04805 amad1_04810 amad1_04810 amad1_04810 1069693 1070142 + flavodoxin COG0716 Flavodoxins gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04810 amad1_04815 amad1_04815 dapD dapD 1070369 1071193 - 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-carboxylate N-succinyltransferase COG2171 Tetrahydrodipicolinate N-succinyltransferase gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04815 amad1_04820 amad1_04820 amad1_04820 1071190 1073841 - UTP-GlnB uridylyltransferase%2C GlnD COG2844 UTP:GlnB (protein PII) uridylyltransferase gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04820 amad1_04825 amad1_04825 amad1_04825 1074111 1074905 - methionine aminopeptidase COG0024 Methionine aminopeptidase gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04825 amad1_04830 amad1_04830 amad1_04830 1075292 1076023 + 30S ribosomal protein S2 COG0052 Ribosomal protein S2 gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04830 amad1_04835 amad1_04835 tsf tsf 1076146 1077018 + elongation factor Ts COG0264 Translation elongation factor Ts gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04835 amad1_04840 amad1_04840 pyrH pyrH 1077254 1077991 + uridylate kinase COG0528 Uridylate kinase gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04840 amad1_04845 amad1_04845 frr frr 1078015 1078572 + ribosome recycling factor COG0233 Ribosome recycling factor gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04845 amad1_04850 amad1_04850 amad1_04850 1078582 1079367 + UDP diphosphate synthase COG0020 Undecaprenyl pyrophosphate synthase gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04850 amad1_04855 amad1_04855 amad1_04855 1079422 1080285 + phosphatidate cytidylyltransferase COG0575 CDP-diglyceride synthetase gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04855 amad1_04860 amad1_04860 amad1_04860 1080285 1081472 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04860 amad1_04865 amad1_04865 amad1_04865 1081466 1082818 + membrane-associated zinc metalloprotease COG0750 Predicted membrane-associated Zn-dependent proteases 1 gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04865 amad1_04870 amad1_04870 amad1_04870 1082877 1085354 + outer membrane protein%2C OMP85 family COG4775 Outer membrane protein/protective antigen OMA87 gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04870 amad1_04875 amad1_04875 amad1_04875 1085417 1085932 + outer membrane protein%2C OmpH family COG2825 Outer membrane protein gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04875 amad1_04880 amad1_04880 fabZ fabZ 1086126 1086575 + (3R)-hydroxymyristoyl-ACP dehydratase COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04880 amad1_04885 amad1_04885 amad1_04885 1086577 1087347 + UDP-N-acetylglucosamine acyltransferase COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04885 amad1_04890 amad1_04890 amad1_04890 1087350 1088498 + tetraacyldisaccharide 4'-kinase COG0763 Lipid A disaccharide synthetase gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04890 amad1_04895 amad1_04895 amad1_04895 1088491 1089063 + ribonuclease HII COG0164 Ribonuclease HII gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04895 amad1_04900 amad1_04900 amad1_04900 1089068 1092532 + DNA polymerase III subunit alpha COG0587 DNA polymerase III%2C alpha subunit gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04900 amad1_04905 amad1_04905 amad1_04905 1092601 1093557 + acetyl-CoA carboxylase carboxyltransferase subunit alpha COG0825 Acetyl-CoA carboxylase alpha subunit gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04905 amad1_04910 amad1_04910 amad1_04910 1093694 1095019 + cell cycle protein MesJ COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04910 amad1_04915 amad1_04915 amad1_04915 1095087 1095986 - diguanylate cyclase COG2199 FOG: GGDEF domain gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04915 amad1_04920 amad1_04920 amad1_04920 1096016 1098178 + Kef-type K+ transport system membrane protein COG0475 Kef-type K+ transport systems%2C membrane components gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04920 amad1_04925 amad1_04925 amad1_04925 1098226 1098453 - hypothetical protein gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04925 amad1_04930 amad1_04930 amad1_04930 1098863 1099534 + cytidine/deoxycytidylate deaminase family protein COG0590 Cytosine/adenosine deaminases gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04930 amad1_04935 amad1_04935 amad1_04935 1099605 1099760 - hypothetical protein gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04935 amad1_04940 amad1_04940 amad1_04940 1099920 1101311 - transglycosylase%2C SLT family protein COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04940 amad1_04945 amad1_04945 amad1_04945 1101488 1105375 + phosphoribosylformylglycinamidine synthase COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase%2C synthetase domain gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04945 amad1_04950 amad1_04950 amad1_04950 1105634 1105774 + hypothetical protein gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04950 amad1_04955 amad1_04955 amad1_04955 1105932 1106519 - Smr domain-containing protein COG2840 Uncharacterized protein conserved in bacteria gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04955 amad1_04960 amad1_04960 amad1_04960 1107317 1107679 - hypothetical protein gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04960 amad1_04965 amad1_04965 amad1_04965 1107645 1109465 - RTX toxin gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04965 amad1_04990 amad1_04990 amad1_04990 1113833 1115200 + HlyD family secretion protein COG0845 Membrane-fusion protein gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04990 amad1_04995 amad1_04995 amad1_04995 1115201 1115797 + putative LuxR-family transcriptional regulator COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_04995 amad1_05000 amad1_05000 amad1_05000 1115772 1116056 - GGDEF:EAL:histidine kinase COG2200 FOG: EAL domain gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05000 amad1_05005 amad1_05005 amad1_05005 1116071 1116277 - hypothetical protein gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05005 amad1_05010 amad1_05010 amad1_05010 1116428 1117612 - putative lipoprotein gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05010 amad1_05015 amad1_05015 amad1_05015 1117942 1118397 + hypothetical protein COG3018 Uncharacterized protein conserved in bacteria gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05015 amad1_05020 amad1_05020 amad1_05020 1118444 1118875 - putative flagellar protein FlgN gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05020 amad1_05025 amad1_05025 amad1_05025 1118906 1119235 - negative regulator of flagellin synthesis FlgM COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor) gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05025 amad1_05030 amad1_05030 amad1_05030 1119338 1120054 - flagellar basal body P-ring biosynthesis protein FlgA COG1261 Flagellar basal body P-ring biosynthesis protein gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05030 amad1_05035 amad1_05035 amad1_05035 1120326 1121255 + chemotaxis protein COG0835 Chemotaxis signal transduction protein gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05035 amad1_05040 amad1_05040 amad1_05040 1121271 1122101 + chemotaxis protein methyltransferase CheR COG1352 Methylase of chemotaxis methyl-accepting proteins gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05040 amad1_05045 amad1_05045 amad1_05045 1122298 1122732 + flagellar basal-body rod protein FlgB COG1815 Flagellar basal body protein gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05045 amad1_05050 amad1_05050 amad1_05050 1122735 1123157 + flagellar basal-body rod protein FlgC COG1558 Flagellar basal body rod protein gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05050 amad1_05055 amad1_05055 amad1_05055 1123189 1123875 + flagellar basal body rod modification protein COG1843 Flagellar hook capping protein gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05055 amad1_05060 amad1_05060 flgE flgE 1123890 1125275 + flagellar hook protein FlgE COG1749 Flagellar hook protein FlgE gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05060 amad1_05065 amad1_05065 amad1_05065 1125502 1126245 + flagellar basal-body rod protein FlgF COG4787 Flagellar basal body rod protein gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05065 amad1_05070 amad1_05070 flgG flgG 1126292 1127080 + flagellar basal body rod protein FlgG COG4786 Flagellar basal body rod protein gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05070 amad1_05075 amad1_05075 flgH flgH 1127080 1127772 + flagellar basal body L-ring protein COG2063 Flagellar basal body L-ring protein gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05075 amad1_05080 amad1_05080 flgI flgI 1127793 1128905 + flagellar basal body P-ring protein COG1706 Flagellar basal-body P-ring protein gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05080 amad1_05085 amad1_05085 amad1_05085 1128939 1129889 + putative flagellar biosynthesis COG3951 Rod binding protein gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05085 amad1_05090 amad1_05090 amad1_05090 1129904 1131946 + flagellar hook-associated protein FlgK COG1256 Flagellar hook-associated protein gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05090 amad1_05095 amad1_05095 amad1_05095 1131954 1133177 + flagellar hook-associated protein FlgL COG1344 Flagellin and related hook-associated proteins gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05095 amad1_05100 amad1_05100 amad1_05100 1133174 1134160 - signal peptide prediction gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05100 amad1_05105 amad1_05105 amad1_05105 1134397 1135221 + flagellin-like protein COG1344 Flagellin and related hook-associated proteins gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05105 amad1_05110 amad1_05110 amad1_05110 1135673 1136497 + flagellin-like protein COG1344 Flagellin and related hook-associated proteins gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05110 amad1_05115 amad1_05115 amad1_05115 1136938 1137762 + flagellin-like protein COG1344 Flagellin and related hook-associated proteins gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05115 amad1_05120 amad1_05120 amad1_05120 1139002 1139826 + flagellin-like protein COG1344 Flagellin and related hook-associated proteins gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05120 amad1_05125 amad1_05125 amad1_05125 1139951 1140385 + flagellar protein FlaG protein COG1334 Uncharacterized flagellar protein FlaG gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05125 amad1_05130 amad1_05130 amad1_05130 1140397 1141827 + flagellar hook-associated 2-like protein COG1345 Flagellar capping protein gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05130 amad1_05135 amad1_05135 amad1_05135 1141850 1142278 + flagellar protein FliS COG1516 Flagellin-specific chaperone FliS gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05135 amad1_05140 amad1_05140 amad1_05140 1142279 1142590 + hypothetical protein gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05140 amad1_05145 amad1_05145 amad1_05145 1142593 1145925 + hypothetical protein COG2604 Uncharacterized protein conserved in bacteria gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05145 amad1_05150 amad1_05150 amad1_05150 1146044 1147042 + polysaccharide biosynthesis protein COG1086 Predicted nucleoside-diphosphate sugar epimerases gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05150 amad1_05155 amad1_05155 amad1_05155 1147043 1148212 + putative DegT/DnrJ/EryC1/StrS aminotransferase COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05155 amad1_05160 amad1_05160 amad1_05160 1148255 1149319 - FlaR protein (FlaR) COG3980 Spore coat polysaccharide biosynthesis protein%2C predicted glycosyltransferase gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05160 amad1_05165 amad1_05165 amad1_05165 1149703 1150752 + N-acylneuraminate-9-phosphate synthase COG2089 Sialic acid synthase gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05165 amad1_05170 amad1_05170 amad1_05170 1150752 1151324 + hypothetical protein COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05170 amad1_05175 amad1_05175 amad1_05175 1151326 1151580 + acyl carrier protein COG0236 Acyl carrier protein gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05175 amad1_05180 amad1_05180 amad1_05180 1151577 1152323 + 3-oxoacyl-ACP reductase COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05180 amad1_05185 amad1_05185 amad1_05185 1152320 1153729 + AMP-dependent synthetase and ligase COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05185 amad1_05190 amad1_05190 amad1_05190 1153723 1154799 + acyl-protein synthetase%2C LuxE gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05190 amad1_05195 amad1_05195 amad1_05195 1154802 1155992 + putative acyl-CoA reductase LuxC gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05195 amad1_05200 amad1_05200 amad1_05200 1156389 1157180 - putative sulfotransferase protein gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05200 amad1_05205 amad1_05205 amad1_05205 1157180 1158142 - radical SAM domain-containing protein COG0535 Predicted Fe-S oxidoreductases gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05205 amad1_05210 amad1_05210 amad1_05210 1158118 1159056 - hypothetical protein gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05210 amad1_05215 amad1_05215 amad1_05215 1159056 1160156 - hypothetical protein gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05215 amad1_05220 amad1_05220 amad1_05220 1160153 1161418 - family 2 glycosyl transferase COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05220 amad1_05225 amad1_05225 amad1_05225 1161418 1162212 - hypothetical protein COG1216 Predicted glycosyltransferases gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05225 amad1_05230 amad1_05230 amad1_05230 1162209 1162583 - ATP-binding protein COG1660 Predicted P-loop-containing kinase gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05230 amad1_05235 amad1_05235 amad1_05235 1162597 1163472 - glycosly transferase COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05235 amad1_05240 amad1_05240 amad1_05240 1163474 1164637 - UDP-galactopyranose mutase COG0562 UDP-galactopyranose mutase gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05240 amad1_05245 amad1_05245 amad1_05245 1164656 1165597 - glycosyl transferase family protein COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05245 amad1_05250 amad1_05250 amad1_05250 1165741 1166364 - putative acylneuraminate cytidylyltransferase COG1083 CMP-N-acetylneuraminic acid synthetase gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05250 amad1_05255 amad1_05255 amad1_05255 1166771 1167568 + flagellin-like protein COG1344 Flagellin and related hook-associated proteins gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05255 amad1_05260 amad1_05260 amad1_05260 1167733 1169193 + polar flagellar protein FlaK COG2204 Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05260 amad1_05265 amad1_05265 amad1_05265 1169329 1170471 + putative sensory box sensor histidine kinase in two-component regulatory system COG0642 Signal transduction histidine kinase gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05265 amad1_05270 amad1_05270 amad1_05270 1170488 1171825 + flagellar regulatory protein C COG2204 Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05270 amad1_05275 amad1_05275 amad1_05275 1172071 1172406 + Flagellar hook-basal body protein COG1677 Flagellar hook-basal body protein gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05275 amad1_05280 amad1_05280 fliF fliF 1172419 1174113 + flagellar MS-ring protein COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05280 amad1_05285 amad1_05285 fliG fliG 1174126 1175166 + flagellar motor switch protein G COG1536 Flagellar motor switch protein gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05285 amad1_05290 amad1_05290 fliH fliH 1175221 1176003 + flagellar assembly protein H COG1317 Flagellar biosynthesis/type III secretory pathway protein gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05290 amad1_05295 amad1_05295 fliI fliI 1175996 1177330 + flagellum-specific ATP synthase COG1157 Flagellar biosynthesis/type III secretory pathway ATPase gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05295 amad1_05300 amad1_05300 amad1_05300 1177403 1177849 + flagellar biosynthesis chaperone COG2882 Flagellar biosynthesis chaperone gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05300 amad1_05305 amad1_05305 amad1_05305 1178197 1180503 + polar flagellar hook-length control protein FliK COG3144 Flagellar hook-length control protein gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05305 amad1_05310 amad1_05310 fliL fliL 1180725 1181264 + flagellar basal body-associated protein FliL COG1580 Flagellar basal body-associated protein gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05310 amad1_05315 amad1_05315 fliM fliM 1181292 1182350 + flagellar motor switch protein FliM COG1868 Flagellar motor switch protein gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05315 amad1_05320 amad1_05320 fliN fliN 1182368 1182775 + flagellar motor switch protein COG1886 Flagellar motor switch/type III secretory pathway protein gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05320 amad1_05325 amad1_05325 amad1_05325 1182804 1183256 + polar flagellar assembly protein FliO COG3190 Flagellar biogenesis protein gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05325 amad1_05330 amad1_05330 fliP fliP 1183249 1184004 + flagellar biosynthesis protein FliP COG1338 Flagellar biosynthesis pathway%2C component FliP gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05330 amad1_05335 amad1_05335 amad1_05335 1184013 1184282 + flagellar biosynthesis COG1987 Flagellar biosynthesis pathway%2C component FliQ gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05335 amad1_05340 amad1_05340 fliR fliR 1184295 1185074 + flagellar biosynthesis protein FliR COG1684 Flagellar biosynthesis pathway%2C component FliR gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05340 amad1_05345 amad1_05345 amad1_05345 1185163 1186287 + flagellar biosynthesis protein COG1377 Flagellar biosynthesis pathway%2C component FlhB gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05345 amad1_05350 amad1_05350 flhA flhA 1186477 1188576 + flagellar biosynthesis protein FlhA COG1298 Flagellar biosynthesis pathway%2C component FlhA gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05350 amad1_05355 amad1_05355 amad1_05355 1188606 1190039 + flagellar biosynthesis protein COG1419 Flagellar GTP-binding protein gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05355 amad1_05360 amad1_05360 amad1_05360 1190045 1190911 + flagellar biosynthetic protein FlhG COG0455 ATPases involved in chromosome partitioning gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05360 amad1_05365 amad1_05365 fliA fliA 1190908 1191639 + flagellar biosynthesis sigma factor COG1191 DNA-directed RNA polymerase specialized sigma subunit gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05365 amad1_05370 amad1_05370 amad1_05370 1191676 1192059 + chemotaxis protein CheY COG0784 FOG: CheY-like receiver gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05370 amad1_05375 amad1_05375 amad1_05375 1192094 1192849 + chemotaxis protein cheZ COG3143 Chemotaxis protein gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05375 amad1_05380 amad1_05380 amad1_05380 1192862 1195117 + chemotaxis protein cheA COG0643 Chemotaxis protein histidine kinase and related kinases gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05380 amad1_05385 amad1_05385 amad1_05385 1195146 1196276 + chemotaxis-specific protein-glutamate methyltransferase COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05385 amad1_05390 amad1_05390 amad1_05390 1196305 1197069 + putative ParA family protein COG1192 ATPases involved in chromosome partitioning gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05390 amad1_05395 amad1_05395 amad1_05395 1197077 1197892 + CheW protein COG0835 Chemotaxis signal transduction protein gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05395 amad1_05400 amad1_05400 amad1_05400 1197910 1198401 + chemotaxis protein CheW COG0835 Chemotaxis signal transduction protein gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05400 amad1_05405 amad1_05405 amad1_05405 1198461 1198895 + DNA repair ATPase gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05405 amad1_05410 amad1_05410 amad1_05410 1199063 1200001 + homoserine O-succinyltransferase COG1897 Homoserine trans-succinylase gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05410 amad1_05415 amad1_05415 amad1_05415 1200005 1201072 + B12-dependent methionine synthase COG0646 Methionine synthase I (cobalamin-dependent)%2C methyltransferase domain gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05415 amad1_05420 amad1_05420 amad1_05420 1201082 1203706 + B12-dependent methionine synthase COG1410 Methionine synthase I%2C cobalamin-binding domain gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05420 amad1_05425 amad1_05425 amad1_05425 1203745 1204335 + hypothetical protein gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05425 amad1_05430 amad1_05430 amad1_05430 1204360 1204644 + hypothetical protein COG3123 Uncharacterized protein conserved in bacteria gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05430 amad1_05435 amad1_05435 amad1_05435 1204706 1205539 - transcriptional regulator COG0583 Transcriptional regulator gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05435 amad1_05440 amad1_05440 amad1_05440 1205611 1206579 - LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05440 amad1_05445 amad1_05445 amad1_05445 1206738 1207391 + carbonic anhydrase COG0288 Carbonic anhydrase gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05445 amad1_05450 amad1_05450 amad1_05450 1207403 1209040 + low affinity sulfate transporter COG0659 Sulfate permease and related transporters (MFS superfamily) gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05450 amad1_05455 amad1_05455 amad1_05455 1209259 1211685 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05455 amad1_05460 amad1_05460 amad1_05460 1211759 1212334 + transcriptional regulator BetI COG1309 Transcriptional regulator gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05460 amad1_05465 amad1_05465 amad1_05465 1212498 1214585 - putative peptidase M13 family protein COG3590 Predicted metalloendopeptidase gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05465 amad1_05470 amad1_05470 amad1_05470 1214575 1215912 - hypothetical protein COG3146 Uncharacterized protein conserved in bacteria gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05470 amad1_05475 amad1_05475 amad1_05475 1216032 1216493 + Regulatory protein RecX COG2137 Uncharacterized protein conserved in bacteria gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05475 amad1_05480 amad1_05480 amad1_05480 1216789 1219386 + alanyl-tRNA synthetase COG0013 Alanyl-tRNA synthetase gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05480 amad1_05485 amad1_05485 amad1_05485 1219521 1219712 + carbon storage regulator COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing) gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05485 amad1_05490 amad1_05490 amad1_05490 1220889 1221155 + oxaloacetate decarboxylase subunit gamma COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C gamma subunit gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05490 amad1_05495 amad1_05495 amad1_05495 1221174 1222988 + oxaloacetate decarboxylase COG5016 Pyruvate/oxaloacetate carboxyltransferase gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05495 amad1_05500 amad1_05500 amad1_05500 1222992 1224122 + oxaloacetate decarboxylase subunit beta COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C beta subunit gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05500 amad1_05505 amad1_05505 amad1_05505 1224240 1225043 - peptide ABC transporter ATP-binding protein COG4167 ABC-type antimicrobial peptide transport system%2C ATPase component gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05505 amad1_05510 amad1_05510 amad1_05510 1225043 1226038 - putative peptide ABC transporter ATP-binding protein COG4170 ABC-type antimicrobial peptide transport system%2C ATPase component gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05510 amad1_05515 amad1_05515 amad1_05515 1226040 1226933 - peptide ABC transporter membrane protein COG4171 ABC-type antimicrobial peptide transport system%2C permease component gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05515 amad1_05520 amad1_05520 amad1_05520 1226920 1227951 - peptide ABC transporter membrane protein COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05520 amad1_05525 amad1_05525 amad1_05525 1227948 1229684 - putative ABC transporter periplasmic peptide-binding protein COG0747 ABC-type dipeptide transport system%2C periplasmic component gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05525 amad1_05530 amad1_05530 amad1_05530 1229688 1230809 - sigma-54 depedent transcriptional activator PspF COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05530 amad1_05535 amad1_05535 amad1_05535 1231031 1231714 + phage shock protein A COG1842 Phage shock protein A (IM30)%2C suppresses sigma54-dependent transcription gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05535 amad1_05540 amad1_05540 pspB pspB 1231789 1232028 + phage shock protein B gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05540 amad1_05545 amad1_05545 amad1_05545 1232025 1232471 + phage shock protein C COG1983 Putative stress-responsive transcriptional regulator gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05545 amad1_05550 amad1_05550 phhA phhA 1232675 1233475 + phenylalanine 4-monooxygenase COG3186 Phenylalanine-4-hydroxylase gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05550 amad1_05555 amad1_05555 amad1_05555 1233678 1235234 + transcriptional regulatory protein tyrR COG3283 Transcriptional regulator of aromatic amino acids metabolism gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05555 amad1_05560 amad1_05560 amad1_05560 1235707 1236717 + 2-keto-4-pentenoate hydratase COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1%2C7-dioic acid hydratase (catechol pathway) gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05560 amad1_05565 amad1_05565 amad1_05565 1236851 1237504 + maleylacetoacetate isomerase COG0625 Glutathione S-transferase gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05565 amad1_05570 amad1_05570 amad1_05570 1237546 1238013 - AsnC family transcriptional regulator COG1522 Transcriptional regulators gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05570 amad1_05575 amad1_05575 amad1_05575 1238322 1239380 + leucine dehydrogenase COG0334 Glutamate dehydrogenase/leucine dehydrogenase gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05575 amad1_05580 amad1_05580 amad1_05580 1239446 1239589 + hypothetical protein gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05580 amad1_05585 amad1_05585 amad1_05585 1239579 1239860 - hypothetical protein gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05585 amad1_05590 amad1_05590 amad1_05590 1240183 1241271 + tryptophan 2%2C3-dioxygenase COG3483 Tryptophan 2%2C3-dioxygenase (vermilion) gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05590 amad1_05605 amad1_05605 amad1_05605 1242618 1245425 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05605 amad1_05610 amad1_05610 amad1_05610 1245491 1246621 + Prolyl 4-hydroxylase alpha subunit gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05610 amad1_05615 amad1_05615 amad1_05615 1246627 1246899 + hypothetical protein gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05615 amad1_05620 amad1_05620 amad1_05620 1246951 1247943 + Aspartyl/Asparaginyl beta-hydroxylase COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05620 amad1_05625 amad1_05625 amad1_05625 1247943 1249757 + TPR domain-containing protein COG0457 FOG: TPR repeat gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05625 amad1_05630 amad1_05630 amad1_05630 1249754 1250308 - Prolyl 4-hydroxylase subunit alpha COG3751 Predicted proline hydroxylase gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05630 amad1_05635 amad1_05635 amad1_05635 1250859 1251620 + hypothetical protein gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05635 amad1_05640 amad1_05640 amad1_05640 1251627 1252985 + MotA/TolQ/ExbB proton channel COG0811 Biopolymer transport proteins gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05640 amad1_05645 amad1_05645 amad1_05645 1252987 1253511 + TonB system biopolymer transport component COG0811 Biopolymer transport proteins gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05645 amad1_05650 amad1_05650 amad1_05650 1253523 1253921 + biopolymer transport protein COG0848 Biopolymer transport protein gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05650 amad1_05655 amad1_05655 amad1_05655 1253923 1254534 + TonB family protein COG0810 Periplasmic protein TonB%2C links inner and outer membranes gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05655 amad1_05660 amad1_05660 amad1_05660 1254537 1255802 + TPR domain-containing protein COG0457 FOG: TPR repeat gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05660 amad1_05665 amad1_05665 amad1_05665 1256000 1258303 - hypothetical protein COG1444 Predicted P-loop ATPase fused to an acetyltransferase gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05665 amad1_05670 amad1_05670 amad1_05670 1258363 1258788 + thioesterase family protein COG1607 Acyl-CoA hydrolase gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05670 amad1_05675 amad1_05675 amad1_05675 1259077 1261167 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05675 amad1_05680 amad1_05680 amad1_05680 1261185 1261448 + hypothetical protein gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05680 amad1_05685 amad1_05685 amad1_05685 1261448 1262092 + transporter COG3201 Nicotinamide mononucleotide transporter gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05685 amad1_05690 amad1_05690 amad1_05690 1262058 1262972 + choline kinase involved in LPS biosynthesis COG0510 Predicted choline kinase involved in LPS biosynthesis gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05690 amad1_05695 amad1_05695 amad1_05695 1263489 1264109 + ribosomal-protein-alanine N-acetyltransferase gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05695 amad1_05700 amad1_05700 amad1_05700 1264109 1264597 + ribosomal-protein-alanine N-acetyltransferase COG0456 Acetyltransferases gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05700 amad1_05705 amad1_05705 amad1_05705 1264860 1265156 + hypothetical protein COG0744 Membrane carboxypeptidase (penicillin-binding protein) gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05705 amad1_05710 amad1_05710 amad1_05710 1265499 1266428 + hypothetical protein COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05710 amad1_05715 amad1_05715 amad1_05715 1266436 1267332 - LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05715 amad1_05720 amad1_05720 amad1_05720 1267527 1268726 + Major facilitator superfamily MFS_1 COG2814 Arabinose efflux permease gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05720 amad1_05725 amad1_05725 amad1_05725 1268737 1269645 + monooxygenase COG2141 Coenzyme F420-dependent N5%2CN10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05725 amad1_05730 amad1_05730 amad1_05730 1269667 1270503 + oxidoreductase COG0656 Aldo/keto reductases%2C related to diketogulonate reductase gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05730 amad1_05735 amad1_05735 amad1_05735 1270534 1271469 + zinc-containing alcohol dehydrogenase COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05735 amad1_05740 amad1_05740 amad1_05740 1271598 1272629 - hypothetical protein gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05740 amad1_05745 amad1_05745 amad1_05745 1272638 1273672 - putative efflux pump protein COG1566 Multidrug resistance efflux pump gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05745 amad1_05750 amad1_05750 amad1_05750 1273673 1274002 - putative transcriptional regulator COG1846 Transcriptional regulators gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05750 amad1_05755 amad1_05755 amad1_05755 1274827 1275015 - hypothetical protein gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05755 amad1_05760 amad1_05760 amad1_05760 1275366 1275686 + XRE family transcriptional regulator COG1396 Predicted transcriptional regulators gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05760 amad1_05765 amad1_05765 amad1_05765 1275679 1276908 + HipA-like protein COG3550 Uncharacterized protein related to capsule biosynthesis enzymes gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05765 amad1_05770 amad1_05770 amad1_05770 1277125 1277319 + DNA-binding protein COG3311 Predicted transcriptional regulator gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05770 amad1_05775 amad1_05775 amad1_05775 1277331 1278572 - integrase-like protein COG0582 Integrase gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05775 amad1_05780 amad1_05780 amad1_05780 1278574 1278843 - hypothetical protein gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05780 amad1_05785 amad1_05785 amad1_05785 1278846 1279820 - rod shape determination protein gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05785 amad1_05790 amad1_05790 amad1_05790 1281096 1282064 + calcium:sodium antiporter COG0530 Ca2+/Na+ antiporter gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05790 amad1_05795 amad1_05795 amad1_05795 1282133 1282966 + mechanosensitive ion channel protein MscS COG0668 Small-conductance mechanosensitive channel gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05795 amad1_05800 amad1_05800 amad1_05800 1282975 1284237 - DNA repair protein COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05800 amad1_05805 amad1_05805 amad1_05805 1284251 1284700 - putative prophage repressor COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05805 amad1_05810 amad1_05810 amad1_05810 1285340 1286245 + DNA polymerase III%2C epsilon subunit-like protein COG0847 DNA polymerase III%2C epsilon subunit and related 3'-5' exonucleases gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05810 amad1_05815 amad1_05815 amad1_05815 1286459 1286758 + plasmid-related protein gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05815 amad1_05820 amad1_05820 amad1_05820 1287076 1288044 + hypothetical protein COG2378 Predicted transcriptional regulator gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05820 amad1_05825 amad1_05825 amad1_05825 1288158 1290587 + N-6 DNA methylase COG0286 Type I restriction-modification system methyltransferase subunit gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05825 amad1_05830 amad1_05830 amad1_05830 1290587 1291855 + type I DNA specificity S subunit COG0732 Restriction endonuclease S subunits gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05830 amad1_05835 amad1_05835 amad1_05835 1291865 1293028 + hypothetical protein COG1637 Predicted nuclease of the RecB family gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05835 amad1_05840 amad1_05840 amad1_05840 1293043 1295943 + type III restriction enzyme%2C res subunit COG0610 Type I site-specific restriction-modification system%2C R (restriction) subunit and related helicases gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05840 amad1_05845 amad1_05845 amad1_05845 1295966 1297051 + ATP-binding region%2C ATPase-like protein gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05845 amad1_05850 amad1_05850 amad1_05850 1297074 1297625 + hypothetical protein COG0469 Pyruvate kinase gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05850 amad1_05855 amad1_05855 amad1_05855 1297755 1297928 + hypothetical protein gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05855 amad1_05860 amad1_05860 amad1_05860 1297930 1298298 + membrane-bound metal-dependent hydrolase COG1988 Predicted membrane-bound metal-dependent hydrolases gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05860 amad1_05865 amad1_05865 amad1_05865 1298308 1299462 + hypothetical protein gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05865 amad1_05870 amad1_05870 amad1_05870 1299455 1300645 + hypothetical protein gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05870 amad1_05875 amad1_05875 amad1_05875 1300646 1301359 + hypothetical protein gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05875 amad1_05880 amad1_05880 amad1_05880 1301476 1303626 + metal dependent phosphohydrolase gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05880 amad1_05885 amad1_05885 amad1_05885 1303675 1305498 + hypothetical protein COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05885 amad1_05890 amad1_05890 amad1_05890 1305508 1306068 + hypothetical protein gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05890 amad1_05895 amad1_05895 amad1_05895 1306055 1306690 + hypothetical protein gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05895 amad1_05900 amad1_05900 amad1_05900 1306717 1307304 - hypothetical protein gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05900 amad1_05905 amad1_05905 amad1_05905 1307318 1307557 - hypothetical protein gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05905 amad1_05910 amad1_05910 amad1_05910 1307593 1307874 + hypothetical protein gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05910 amad1_05915 amad1_05915 amad1_05915 1307965 1308498 + IncF plasmid conjugative transfer pilus assembly protein TraE gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05915 amad1_05920 amad1_05920 amad1_05920 1308482 1309378 + IncF plasmid conjugative transfer pilus assembly protein TraK gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05920 amad1_05925 amad1_05925 amad1_05925 1309381 1310670 + TraB pilus assembly family protein gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05925 amad1_05930 amad1_05930 amad1_05930 1310745 1311317 + hypothetical protein gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05930 amad1_05935 amad1_05935 amad1_05935 1311314 1311703 + hypothetical protein gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05935 amad1_05940 amad1_05940 amad1_05940 1312112 1314607 + heavy metal translocating P-type ATPase COG2217 Cation transport ATPase gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05940 amad1_05945 amad1_05945 amad1_05945 1314633 1315097 + MerR family transcriptional regulator COG0789 Predicted transcriptional regulators gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05945 amad1_05950 amad1_05950 amad1_05950 1315184 1315459 - MerR family transcriptional regulator COG0789 Predicted transcriptional regulators gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05950 amad1_05955 amad1_05955 amad1_05955 1315883 1316074 + hypothetical protein gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05955 amad1_05960 amad1_05960 amad1_05960 1316085 1316255 + hypothetical protein COG2217 Cation transport ATPase gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05960 amad1_05965 amad1_05965 amad1_05965 1316682 1317107 + MerR family transcriptional regulator COG0789 Predicted transcriptional regulators gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05965 amad1_05970 amad1_05970 amad1_05970 1317870 1318223 + regulatory protein ArsR COG0640 Predicted transcriptional regulators gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05970 amad1_05975 amad1_05975 amad1_05975 1318264 1318527 - dihydrolipoamide dehydrogenase COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05975 amad1_05980 amad1_05980 amad1_05980 1318544 1319242 - dihydrolipoamide dehydrogenase COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05980 amad1_05985 amad1_05985 amad1_05985 1319588 1320616 + cation diffusion facilitator family transporter COG1230 Co/Zn/Cd efflux system component gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05985 amad1_05990 amad1_05990 amad1_05990 1320661 1320939 + regulatory protein ArsR COG0640 Predicted transcriptional regulators gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05990 amad1_05995 amad1_05995 amad1_05995 1321650 1324190 + heavy metal translocating P-type ATPase COG2217 Cation transport ATPase gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_05995 amad1_06015 amad1_06015 amad1_06015 1325860 1329051 + hydrophobe/amphiphile efflux-1 (HAE1) family protein COG0841 Cation/multidrug efflux pump gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06015 amad1_06020 amad1_06020 amad1_06020 1329053 1330546 + RND efflux system outer membrane lipoprotein COG1538 Outer membrane protein gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06020 amad1_06035 amad1_06035 amad1_06035 1331522 1331743 + hydrophobe/amphiphile efflux protein COG0841 Cation/multidrug efflux pump gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06035 amad1_06040 amad1_06040 amad1_06040 1331841 1332032 + putative copper chaperone COG2608 Copper chaperone gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06040 amad1_06045 amad1_06045 amad1_06045 1332111 1332473 - IS element transposase gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06045 amad1_06050 amad1_06050 amad1_06050 1333002 1333256 + hypothetical protein COG3436 Transposase and inactivated derivatives gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06050 amad1_06055 amad1_06055 amad1_06055 1333467 1334159 + thiol:disulfide interchange protein DsbC COG1651 Protein-disulfide isomerase gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06055 amad1_06060 amad1_06060 amad1_06060 1334159 1336558 + IncF plasmid conjugative transfer pilus assembly protein TraC COG3451 Type IV secretory pathway%2C VirB4 components gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06060 amad1_06065 amad1_06065 amad1_06065 1336551 1336898 + hypothetical protein gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06065 amad1_06070 amad1_06070 amad1_06070 1336882 1337394 + plasmid conjugation signal peptidase COG0681 Signal peptidase I gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06070 amad1_06075 amad1_06075 amad1_06075 1337405 1338529 + plasmid pilus assembly protein gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06075 amad1_06080 amad1_06080 amad1_06080 1338513 1339541 + TraU family protein gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06080 amad1_06085 amad1_06085 amad1_06085 1339544 1343236 + mating pair stabilization TraN gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06085 amad1_06090 amad1_06090 amad1_06090 1343378 1345054 - UvrD/REP helicase COG0210 Superfamily I DNA and RNA helicases gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06090 amad1_06095 amad1_06095 amad1_06095 1345051 1346976 - SMC domain-containing protein COG3593 Predicted ATP-dependent endonuclease of the OLD family gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06095 amad1_06100 amad1_06100 amad1_06100 1347054 1349432 - peptidase%2C S8/S53 family protein COG1404 Subtilisin-like serine proteases gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06100 amad1_06105 amad1_06105 amad1_06105 1349447 1350418 - ATPase AAA COG0464 ATPases of the AAA+ class gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06105 amad1_06110 amad1_06110 amad1_06110 1350529 1350708 - hypothetical protein gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06110 amad1_06115 amad1_06115 amad1_06115 1350850 1351452 - plasmid-related protein COG0366 Glycosidases gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06115 amad1_06120 amad1_06120 amad1_06120 1351820 1352146 + hypothetical protein gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06120 amad1_06125 amad1_06125 amad1_06125 1352162 1352581 + single-stranded DNA-binding protein COG0629 Single-stranded DNA-binding protein gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06125 amad1_06130 amad1_06130 amad1_06130 1352661 1353479 + phage recombination protein gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06130 amad1_06135 amad1_06135 amad1_06135 1353561 1353704 + hypothetical protein gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06135 amad1_06140 amad1_06140 amad1_06140 1353766 1354782 + DNA recombination protein COG5377 Phage-related protein%2C predicted endonuclease gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06140 amad1_06145 amad1_06145 amad1_06145 1354992 1355951 + ATPase associated with various cellular activities AAA_5 COG0714 MoxR-like ATPases gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06145 amad1_06150 amad1_06150 amad1_06150 1355951 1356718 + hypothetical protein gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06150 amad1_06155 amad1_06155 amad1_06155 1356817 1357770 + cobalamine biosynthesis protein gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06155 amad1_06160 amad1_06160 amad1_06160 1357832 1358272 + hypothetical protein gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06160 amad1_06165 amad1_06165 amad1_06165 1358342 1359997 + plasmid-like protein COG4548 Nitric oxide reductase activation protein gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06165 amad1_06170 amad1_06170 amad1_06170 1360083 1360580 + DNA repair protein RadC COG2003 DNA repair proteins gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06170 amad1_06175 amad1_06175 amad1_06175 1360580 1360921 + hypothetical protein gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06175 amad1_06180 amad1_06180 amad1_06180 1361013 1362080 + Phage P4 alpha%2C zinc-binding domain protein COG0593 ATPase involved in DNA replication initiation gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06180 amad1_06185 amad1_06185 amad1_06185 1362170 1362877 + hypothetical protein gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06185 amad1_06190 amad1_06190 amad1_06190 1363120 1364037 - LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06190 amad1_06195 amad1_06195 amad1_06195 1364150 1365289 + chromate resistance protein-like protein COG2059 Chromate transport protein ChrA gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06195 amad1_06200 amad1_06200 amad1_06200 1365661 1366605 + IncF plasmid conjugative transfer pilus assembly protein TraF COG0526 Thiol-disulfide isomerase and thioredoxins gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06200 amad1_06205 amad1_06205 amad1_06205 1366608 1367996 + TraH family protein gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06205 amad1_06210 amad1_06210 amad1_06210 1368000 1371569 + pilus assembly protein gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06210 amad1_06215 amad1_06215 amad1_06215 1371602 1372033 - hypothetical protein COG1982 Arginine/lysine/ornithine decarboxylases gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06215 amad1_06220 amad1_06220 amad1_06220 1372091 1372624 - Transcriptional activator gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06220 amad1_06225 amad1_06225 amad1_06225 1372621 1372920 - Transcriptional activator gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06225 amad1_06230 amad1_06230 amad1_06230 1372917 1373465 - lytic transglycosylase%2C catalytic COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06230 amad1_06235 amad1_06235 amad1_06235 1373452 1374114 - hypothetical protein gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06235 amad1_06240 amad1_06240 amad1_06240 1374101 1374970 - hypothetical protein gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06240 amad1_06245 amad1_06245 amad1_06245 1375026 1375277 - hypothetical protein COG4197 Uncharacterized protein conserved in bacteria%2C prophage-related gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06245 amad1_06250 amad1_06250 amad1_06250 1375395 1376042 + HTH-type transcriptional regulator for conjugative element SXT COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06250 amad1_06255 amad1_06255 prfC prfC 1376320 1377909 + peptide chain release factor 3 COG4108 Peptide chain release factor RF-3 gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06255 amad1_06260 amad1_06260 argS argS 1377923 1379653 + arginyl-tRNA ligase COG0018 Arginyl-tRNA synthetase gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06260 amad1_06265 amad1_06265 amad1_06265 1379846 1380412 + flavoprotein COG0431 Predicted flavoprotein gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06265 amad1_06270 amad1_06270 amad1_06270 1380625 1380828 + hypothetical protein gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06270 amad1_06275 amad1_06275 amad1_06275 1380936 1382108 - hypothetical protein gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06275 amad1_06280 amad1_06280 amad1_06280 1382252 1383295 - putative Pyridoxal-phosphate dependent protein COG0031 Cysteine synthase gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06280 amad1_06285 amad1_06285 amad1_06285 1383714 1384928 + hypothetical protein COG0464 ATPases of the AAA+ class gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06285 amad1_06290 amad1_06290 amad1_06290 1385031 1387889 + GGDEF family protein COG3292 Predicted periplasmic ligand-binding sensor domain gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06290 amad1_06295 amad1_06295 amad1_06295 1387951 1388829 - hypothetical protein COG3059 Predicted membrane protein gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06295 amad1_06300 amad1_06300 amad1_06300 1389093 1389551 + putative secreted protein gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06300 amad1_06305 amad1_06305 amad1_06305 1389666 1390103 + hypothetical protein COG4852 Predicted membrane protein gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06305 amad1_06310 amad1_06310 amad1_06310 1390081 1391244 - putative fatty acid desaturase COG3239 Fatty acid desaturase gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06310 amad1_06315 amad1_06315 amad1_06315 1391241 1392224 - putative Oxidoreductase COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06315 amad1_06320 amad1_06320 amad1_06320 1392619 1392837 - hypothetical protein gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06320 amad1_06325 amad1_06325 amad1_06325 1393525 1394271 + Protein chain release factor B%2C RF-2 COG1186 Protein chain release factor B gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06325 amad1_06330 amad1_06330 lysS lysS 1394295 1395863 + lysyl-tRNA ligase COG1190 Lysyl-tRNA synthetase (class II) gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06330 amad1_06335 amad1_06335 amad1_06335 1395964 1396905 - 2-dehydropantoate 2-reductase COG1893 Ketopantoate reductase gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06335 amad1_06340 amad1_06340 amad1_06340 1396908 1397747 - pseudouridine synthase Rlu family protein COG0564 Pseudouridylate synthases%2C 23S RNA-specific gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06340 amad1_06345 amad1_06345 amad1_06345 1397747 1398307 - histidine kinase COG0643 Chemotaxis protein histidine kinase and related kinases gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06345 amad1_06350 amad1_06350 amad1_06350 1398610 1401480 + putative metallopeptidase COG0612 Predicted Zn-dependent peptidases gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06350 amad1_06355 amad1_06355 amad1_06355 1401555 1403153 + glutamate cysteine ligase COG2918 Gamma-glutamylcysteine synthetase gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06355 amad1_06360 amad1_06360 amad1_06360 1403221 1403859 + putative lipoprotein COG4764 Uncharacterized protein conserved in bacteria gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06360 amad1_06365 amad1_06365 amad1_06365 1404262 1404720 + hypothetical protein gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06365 amad1_06370 amad1_06370 amad1_06370 1404816 1405235 + hypothetical protein COG0753 Catalase gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06370 amad1_06375 amad1_06375 amad1_06375 1405418 1405543 + hypothetical protein gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06375 amad1_06380 amad1_06380 amad1_06380 1405574 1406224 - hypothetical protein COG2840 Uncharacterized protein conserved in bacteria gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06380 amad1_06385 amad1_06385 amad1_06385 1406338 1407312 + N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase COG2890 Methylase of polypeptide chain release factors gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06385 amad1_06390 amad1_06390 amad1_06390 1407322 1408419 + chorismate synthase COG0082 Chorismate synthase gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06390 amad1_06395 amad1_06395 amad1_06395 1408567 1409784 + major facilitator superfamily protein COG0477 Permeases of the major facilitator superfamily gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06395 amad1_06400 amad1_06400 amad1_06400 1409814 1411361 - SpoVR family protein COG2719 Uncharacterized conserved protein gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06400 amad1_06405 amad1_06405 amad1_06405 1411363 1412649 - hypothetical protein COG2718 Uncharacterized conserved protein gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06405 amad1_06410 amad1_06410 amad1_06410 1412734 1414656 - PrkA family serine protein kinase COG2766 Putative Ser protein kinase gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06410 amad1_06415 amad1_06415 amad1_06415 1414897 1415478 - iron superoxide dismutase COG0605 Superoxide dismutase gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06415 amad1_06420 amad1_06420 amad1_06420 1415827 1416177 + putative glutaredoxin like protein COG0278 Glutaredoxin-related protein gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06420 amad1_06425 amad1_06425 amad1_06425 1416536 1419106 + putative TonB-dependent outer membrane receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06425 amad1_06430 amad1_06430 amad1_06430 1419201 1419833 + putative RNA polymerase sigma-70 factor FecI COG1595 DNA-directed RNA polymerase specialized sigma subunit%2C sigma24 homolog gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06430 amad1_06435 amad1_06435 amad1_06435 1419835 1420890 + putative regulatory protein COG3712 Fe2+-dicitrate sensor%2C membrane component gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06435 amad1_06440 amad1_06440 amad1_06440 1420990 1424037 + putative TonB-dependent outer membrane receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06440 amad1_06445 amad1_06445 amad1_06445 1424155 1424349 - bacterioferritin-associated ferredoxin COG2906 Bacterioferritin-associated ferredoxin gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06445 amad1_06450 amad1_06450 amad1_06450 1424625 1425230 + AhpC/Tsa family antioxidant COG0450 Peroxiredoxin gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06450 amad1_06455 amad1_06455 amad1_06455 1425352 1425984 - ribonuclease T COG0847 DNA polymerase III%2C epsilon subunit and related 3'-5' exonucleases gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06455 amad1_06460 amad1_06460 amad1_06460 1426374 1427246 + sodium-type flagellar protein MotY COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06460 amad1_06465 amad1_06465 amad1_06465 1427340 1428500 - putative glycerophosphoryl diester phosphodiesterase COG0584 Glycerophosphoryl diester phosphodiesterase gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06465 amad1_06470 amad1_06470 amad1_06470 1428629 1429036 - lactoylglutathione lyase COG0346 Lactoylglutathione lyase and related lyases gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06470 amad1_06475 amad1_06475 amad1_06475 1429509 1429721 + hypothetical protein COG1278 Cold shock proteins gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06475 amad1_06480 amad1_06480 amad1_06480 1429770 1430039 + hypothetical protein gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06480 amad1_06485 amad1_06485 amad1_06485 1430323 1431738 - aminopeptidase COG2234 Predicted aminopeptidases gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06485 amad1_06490 amad1_06490 amad1_06490 1431772 1432485 - Endonuclease III/Nth COG0177 Predicted EndoIII-related endonuclease gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06490 amad1_06495 amad1_06495 amad1_06495 1432531 1433223 - electron transport complex RsxE subunit COG4660 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfE gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06495 amad1_06500 amad1_06500 amad1_06500 1433226 1433999 - electron transport complex protein RnfG COG4659 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfG gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06500 amad1_06505 amad1_06505 amad1_06505 1433996 1435084 - electron transport complex protein RnfD COG4658 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfD gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06505 amad1_06520 amad1_06520 amad1_06520 1437539 1438120 - electron transport complex protein RnfB COG2878 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfB gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06520 amad1_06525 amad1_06525 amad1_06525 1438120 1438701 - Na(+)-translocating NADH-quinone reductase subunit E COG4657 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfA gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06525 amad1_06530 amad1_06530 amad1_06530 1440110 1441492 + MATE efflux family protein COG0534 Na+-driven multidrug efflux pump gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06530 amad1_06535 amad1_06535 amad1_06535 1441600 1443615 + excinuclease ABC subunit B COG0556 Helicase subunit of the DNA excision repair complex gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06535 amad1_06540 amad1_06540 amad1_06540 1443881 1444807 + LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06540 amad1_06545 amad1_06545 amad1_06545 1444928 1445584 - putative regulator protein COG0603 Predicted PP-loop superfamily ATPase gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06545 amad1_06550 amad1_06550 amad1_06550 1445679 1446353 + radical activating enzyme COG0602 Organic radical activating enzymes gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06550 amad1_06555 amad1_06555 amad1_06555 1446354 1447274 + amino acid ABC transporter/signal transduction system periplasmic protein gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06555 amad1_06560 amad1_06560 asnB asnB 1447332 1449002 - asparagine synthetase B COG0367 Asparagine synthase (glutamine-hydrolyzing) gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06560 amad1_06565 amad1_06565 amad1_06565 1449352 1450134 + hypothetical protein COG1723 Uncharacterized conserved protein gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06565 amad1_06570 amad1_06570 amad1_06570 1450235 1451902 - putative Glutamate carboxypeptidase II COG2234 Predicted aminopeptidases gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06570 amad1_06575 amad1_06575 amad1_06575 1451973 1452866 + putative transmembrane protein gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06575 amad1_06580 amad1_06580 amad1_06580 1453000 1453704 - hypothetical protein gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06580 amad1_06585 amad1_06585 amad1_06585 1453959 1455683 - putative transporter COG0471 Di- and tricarboxylate transporters gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06585 amad1_06590 amad1_06590 amad1_06590 1455700 1457115 - sulfate adenylyltransferase subunit 1 COG2895 GTPases - Sulfate adenylate transferase subunit 1 gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06590 amad1_06595 amad1_06595 amad1_06595 1457117 1457908 - putative PAP (3%2C5 adenosine diphosphate) 3 phosphatase COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06595 amad1_06600 amad1_06600 amad1_06600 1457908 1458504 - adenylylsulfate kinase COG0529 Adenylylsulfate kinase and related kinases gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06600 amad1_06605 amad1_06605 amad1_06605 1458504 1459418 - sulfate adenylyltransferase subunit 2 COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06605 amad1_06610 amad1_06610 amad1_06610 1459673 1461178 - proline/sodium symporter COG0591 Na+/proline symporter gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06610 amad1_06615 amad1_06615 amad1_06615 1461294 1463255 - response regulator receiver modulated diguanylate cyclase COG2199 FOG: GGDEF domain gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06615 amad1_06620 amad1_06620 amad1_06620 1463459 1464163 - hypothetical protein gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06620 amad1_06625 amad1_06625 amad1_06625 1464156 1464713 - RNA polymerase sigma factor COG1595 DNA-directed RNA polymerase specialized sigma subunit%2C sigma24 homolog gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06625 amad1_06630 amad1_06630 amad1_06630 1464822 1466675 - hypothetical protein COG4805 Uncharacterized protein conserved in bacteria gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06630 amad1_06635 amad1_06635 amad1_06635 1466889 1468697 - batD protein gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06635 amad1_06640 amad1_06640 amad1_06640 1468698 1470701 - TPR domain-containing protein COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06640 amad1_06645 amad1_06645 amad1_06645 1470701 1471750 - von Willebrand factor type A domain-containing protein COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06645 amad1_06650 amad1_06650 amad1_06650 1471743 1472411 - hypothetical protein gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06650 amad1_06655 amad1_06655 amad1_06655 1472411 1473385 - hypothetical protein COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06655 amad1_06660 amad1_06660 amad1_06660 1473389 1474345 - putative ATPase family protein COG0714 MoxR-like ATPases gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06660 amad1_06665 amad1_06665 fadI fadI 1474756 1476066 + 3-ketoacyl-CoA thiolase COG0183 Acetyl-CoA acetyltransferase gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06665 amad1_06670 amad1_06670 fadJ fadJ 1476068 1478227 + multifunctional fatty acid oxidation complex subunit alpha COG1024 Enoyl-CoA hydratase/carnithine racemase gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06670 amad1_06675 amad1_06675 amad1_06675 1478437 1478634 + hypothetical protein gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06675 amad1_06680 amad1_06680 amad1_06680 1478736 1478903 - hypothetical protein gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06680 amad1_06685 amad1_06685 amad1_06685 1479201 1483733 - sensory box protein COG2202 FOG: PAS/PAC domain gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06685 amad1_06690 amad1_06690 amad1_06690 1483976 1486660 - peptidase%2C M16 family protein COG1025 Secreted/periplasmic Zn-dependent peptidases%2C insulinase-like gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06690 amad1_06695 amad1_06695 amad1_06695 1486883 1487410 + phosphohistidine phosphatase SixA COG2062 Phosphohistidine phosphatase SixA gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06695 amad1_06700 amad1_06700 amad1_06700 1487532 1487732 + hypothetical protein gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06700 amad1_06705 amad1_06705 amad1_06705 1487743 1489038 - hypothetical protein COG4536 Putative Mg2+ and Co2+ transporter CorB gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06705 amad1_06710 amad1_06710 amad1_06710 1489216 1490013 - cytochrome c assembly protein COG4137 ABC-type uncharacterized transport system%2C permease component gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06710 amad1_06715 amad1_06715 amad1_06715 1490255 1491691 + signal recognition particle protein COG0541 Signal recognition particle GTPase gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06715 amad1_06720 amad1_06720 amad1_06720 1491874 1493940 + NHL repeat containing protein gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06720 amad1_06725 amad1_06725 amad1_06725 1494094 1494510 - hypothetical protein gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06725 amad1_06730 amad1_06730 amad1_06730 1494920 1498630 + hypothetical protein COG1196 Chromosome segregation ATPases gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06730 amad1_06735 amad1_06735 amad1_06735 1498627 1499262 + hypothetical protein gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06735 amad1_06740 amad1_06740 amad1_06740 1499259 1500476 + hypothetical protein COG0515 Serine/threonine protein kinase gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06740 amad1_06745 amad1_06745 amad1_06745 1500817 1501209 + hypothetical protein gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06745 amad1_06750 amad1_06750 amad1_06750 1501243 1502478 + lipoprotein COG2267 Lysophospholipase gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06750 amad1_06755 amad1_06755 amad1_06755 1502586 1505702 - RND family efflux transporter COG0841 Cation/multidrug efflux pump gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06755 amad1_06760 amad1_06760 amad1_06760 1505695 1506663 - RND family efflux system membrane fusion protein COG0845 Membrane-fusion protein gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06760 amad1_06765 amad1_06765 amad1_06765 1506896 1508773 - ABC transporter ATP-binding protein/permease COG1132 ABC-type multidrug transport system%2C ATPase and permease components gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06765 amad1_06770 amad1_06770 amad1_06770 1508899 1509111 + hypothetical protein gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06770 amad1_06775 amad1_06775 amad1_06775 1509137 1509631 - hypothetical protein gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06775 amad1_06780 amad1_06780 rpsP rpsP 1510020 1510271 + 30S ribosomal protein S16 COG0228 Ribosomal protein S16 gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06780 amad1_06785 amad1_06785 rimM rimM 1510295 1510816 + 16S rRNA-processing protein RimM COG0806 RimM protein%2C required for 16S rRNA processing gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06785 amad1_06790 amad1_06790 trmD trmD 1510817 1511578 + tRNA (guanine-N(1)-)-methyltransferase COG0336 tRNA-(guanine-N1)-methyltransferase gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06790 amad1_06795 amad1_06795 rplS rplS 1511594 1511956 + 50S ribosomal protein L19 COG0335 Ribosomal protein L19 gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06795 amad1_06800 amad1_06800 amad1_06800 1512085 1512735 + hypothetical protein COG2860 Predicted membrane protein gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06800 amad1_06805 amad1_06805 amad1_06805 1512839 1513585 - enoyl-CoA hydratase/isomerase COG1024 Enoyl-CoA hydratase/carnithine racemase gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06805 amad1_06810 amad1_06810 amad1_06810 1513927 1515015 + phospho-2-dehydro-3-deoxyheptonate aldolase COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06810 amad1_06815 amad1_06815 tyrA tyrA 1515058 1516212 + bifunctional chorismate mutase/prephenate dehydrogenase COG1605 Chorismate mutase gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06815 amad1_06820 amad1_06820 amad1_06820 1516273 1517526 - chorismate mutase/prephenate dehydratase COG1605 Chorismate mutase gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06820 amad1_06825 amad1_06825 amad1_06825 1517766 1518566 - chemotaxis protein CheY/response regulator receiver domain-containing protein COG0784 FOG: CheY-like receiver gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06825 amad1_06830 amad1_06830 amad1_06830 1518626 1518958 - translation initiation factor Sui1 COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06830 amad1_06835 amad1_06835 amad1_06835 1519130 1519435 + putative anti-sigma factor antagonist COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06835 amad1_06840 amad1_06840 amad1_06840 1519443 1521128 + putative response regulator COG0784 FOG: CheY-like receiver gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06840 amad1_06845 amad1_06845 amad1_06845 1521287 1521730 + hypothetical protein COG4103 Uncharacterized protein conserved in bacteria gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06845 amad1_06850 amad1_06850 amad1_06850 1521905 1523974 + diguanylate cyclase/phosphodiesterase COG2199 FOG: GGDEF domain gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06850 amad1_06855 amad1_06855 amad1_06855 1524280 1524558 + calcium-binding EF-hand protein gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06855 amad1_06860 amad1_06860 amad1_06860 1524609 1526018 + two-component system sensor kinase COG0642 Signal transduction histidine kinase gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06860 amad1_06865 amad1_06865 amad1_06865 1526021 1526605 + hypothetical protein COG1197 Transcription-repair coupling factor (superfamily II helicase) gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06865 amad1_06870 amad1_06870 amad1_06870 1526602 1527942 + two-component system response regulator COG2204 Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06870 amad1_06875 amad1_06875 amad1_06875 1528104 1528286 + flagellin domain-containing protein COG1344 Flagellin and related hook-associated proteins gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06875 amad1_06880 amad1_06880 amad1_06880 1528471 1528614 - putative GAF sensor protein gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06880 amad1_06885 amad1_06885 amad1_06885 1528646 1528954 - putative GAF sensor protein COG2203 FOG: GAF domain gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06885 amad1_06890 amad1_06890 amad1_06890 1529033 1529866 - hypothetical protein COG1801 Uncharacterized conserved protein gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06890 amad1_06895 amad1_06895 aspS aspS 1530115 1531875 + aspartyl-tRNA ligase COG0173 Aspartyl-tRNA synthetase gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06895 amad1_06900 amad1_06900 amad1_06900 1531879 1532319 + dATP pyrophosphohydrolase COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06900 amad1_06905 amad1_06905 amad1_06905 1532319 1532837 + Holliday junction resolvase COG0817 Holliday junction resolvasome%2C endonuclease subunit gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06905 amad1_06910 amad1_06910 amad1_06910 1532874 1533494 + Holliday junction DNA helicase motor protein COG0632 Holliday junction resolvasome%2C DNA-binding subunit gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06910 amad1_06915 amad1_06915 ruvB ruvB 1533563 1534567 + Holliday junction DNA helicase RuvB COG2255 Holliday junction resolvasome%2C helicase subunit gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06915 amad1_06920 amad1_06920 amad1_06920 1535088 1535486 + 4-hydroxybenzoyl-CoA thioesterase COG0824 Predicted thioesterase gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06920 amad1_06925 amad1_06925 amad1_06925 1535476 1536165 + tolQ protein COG0811 Biopolymer transport proteins gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06925 amad1_06930 amad1_06930 amad1_06930 1536195 1536614 + Biopolymer transport protein COG0848 Biopolymer transport protein gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06930 amad1_06935 amad1_06935 amad1_06935 1536622 1537503 + TolA-like protein COG3064 Membrane protein involved in colicin uptake gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06935 amad1_06940 amad1_06940 tolB tolB 1537508 1538863 + translocation protein TolB COG0823 Periplasmic component of the Tol biopolymer transport system gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06940 amad1_06945 amad1_06945 amad1_06945 1538904 1539470 + peptidoglycan-associated lipoprotein COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06945 amad1_06950 amad1_06950 amad1_06950 1539470 1540264 + hypothetical protein COG1729 Uncharacterized protein conserved in bacteria gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06950 amad1_06955 amad1_06955 amad1_06955 1540657 1540752 + hypothetical protein gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06955 amad1_06960 amad1_06960 amad1_06960 1541044 1542315 + maturase COG3344 Retron-type reverse transcriptase gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06960 amad1_06965 amad1_06965 amad1_06965 1543191 1544246 + quinolinate synthetase COG0379 Quinolinate synthase gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06965 amad1_06970 amad1_06970 amad1_06970 1544553 1546310 + integrase COG0582 Integrase gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06970 amad1_06975 amad1_06975 amad1_06975 1546655 1547428 - hypothetical protein gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06975 amad1_06980 amad1_06980 amad1_06980 1547421 1548002 - resolvase domain-containing protein COG1961 Site-specific recombinases%2C DNA invertase Pin homologs gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06980 amad1_06985 amad1_06985 amad1_06985 1548237 1548890 + hypothetical protein gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06985 amad1_06990 amad1_06990 amad1_06990 1549130 1549564 - hypothetical protein gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06990 amad1_06995 amad1_06995 amad1_06995 1549756 1550898 - patatin COG4667 Predicted esterase of the alpha-beta hydrolase superfamily gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_06995 amad1_07000 amad1_07000 amad1_07000 1551261 1552280 + 2-dehydropantoate 2-reductase COG1893 Ketopantoate reductase gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07000 amad1_07005 amad1_07005 amad1_07005 1552484 1553614 + phosphate-selective porin gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07005 amad1_07010 amad1_07010 amad1_07010 1553624 1556026 - multi-sensor hybrid histidine kinase COG0642 Signal transduction histidine kinase gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07010 amad1_07015 amad1_07015 amad1_07015 1556270 1556629 + glyoxalase family protein COG3324 Predicted enzyme related to lactoylglutathione lyase gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07015 amad1_07020 amad1_07020 amad1_07020 1556765 1557889 - aspartate-semialdehyde dehydrogenase COG0136 Aspartate-semialdehyde dehydrogenase gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07020 amad1_07025 amad1_07025 amad1_07025 1558330 1558521 + short-chain dehydrogenase/reductase SDR COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07025 amad1_07030 amad1_07030 amad1_07030 1558873 1559439 + cytochrome b561 COG3038 Cytochrome B561 gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07030 amad1_07035 amad1_07035 amad1_07035 1559591 1561186 - putative signal transduction protein COG2199 FOG: GGDEF domain gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07035 amad1_07040 amad1_07040 amad1_07040 1561179 1561622 - hypothetical protein gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07040 amad1_07045 amad1_07045 amad1_07045 1561632 1562975 - hypothetical protein gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07045 amad1_07050 amad1_07050 amad1_07050 1563050 1563964 - LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07050 amad1_07055 amad1_07055 amad1_07055 1564109 1564606 + hypothetical protein COG1451 Predicted metal-dependent hydrolase gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07055 amad1_07060 amad1_07060 amad1_07060 1564737 1565156 + CBS domain-containing membrane protein COG0517 FOG: CBS domain gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07060 amad1_07065 amad1_07065 amad1_07065 1565260 1568301 - transporter COG0841 Cation/multidrug efflux pump gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07065 amad1_07070 amad1_07070 amad1_07070 1568305 1569444 - putative multidrug resistance protein COG0845 Membrane-fusion protein gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07070 amad1_07075 amad1_07075 amad1_07075 1569583 1570197 + transcriptional regulator COG1309 Transcriptional regulator gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07075 amad1_07080 amad1_07080 amad1_07080 1570697 1572778 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07080 amad1_07085 amad1_07085 amad1_07085 1572998 1573486 - histone acetyltransferase HPA2-like acetyltransferase COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07085 amad1_07090 amad1_07090 amad1_07090 1573610 1576789 - putative multidrug resistance protein COG0841 Cation/multidrug efflux pump gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07090 amad1_07095 amad1_07095 amad1_07095 1576799 1577947 - putative multidrug resistance protein COG0845 Membrane-fusion protein gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07095 amad1_07100 amad1_07100 amad1_07100 1578101 1579201 - GGDEF domain-containing protein COG2199 FOG: GGDEF domain gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07100 amad1_07105 amad1_07105 amad1_07105 1579204 1579815 - hypothetical protein COG3009 Uncharacterized protein conserved in bacteria gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07105 amad1_07110 amad1_07110 amad1_07110 1579992 1581644 - paraquat-inducible protein B COG3008 Paraquat-inducible protein B gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07110 amad1_07115 amad1_07115 amad1_07115 1581641 1582783 - PqiA family integral membrane protein COG2995 Uncharacterized paraquat-inducible protein A gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07115 amad1_07120 amad1_07120 amad1_07120 1582938 1583981 + hypothetical protein gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07120 amad1_07125 amad1_07125 amad1_07125 1584032 1584403 - short-chain dehydrogenase/reductase SDR COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07125 amad1_07130 amad1_07130 asnC asnC 1584533 1585930 - asparaginyl-tRNA ligase COG0017 Aspartyl/asparaginyl-tRNA synthetases gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07130 amad1_07135 amad1_07135 amad1_07135 1586264 1586752 + hypothetical protein gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07135 amad1_07140 amad1_07140 amad1_07140 1586878 1587846 - CACA family Na+/Ca+ antiporter COG0530 Ca2+/Na+ antiporter gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07140 amad1_07145 amad1_07145 amad1_07145 1588098 1589585 + glutathione synthase COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07145 amad1_07150 amad1_07150 amad1_07150 1589582 1590871 + CN5-related N-acetyltransferase COG0456 Acetyltransferases gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07150 amad1_07155 amad1_07155 amad1_07155 1590915 1591196 - hypothetical protein gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07155 amad1_07160 amad1_07160 amad1_07160 1591566 1592087 - hypothetical protein gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07160 amad1_07165 amad1_07165 amad1_07165 1592206 1593531 - adenosylmethionine--8-amino-7-oxononanoate aminotransferase COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07165 amad1_07170 amad1_07170 amad1_07170 1593570 1594694 + biotin synthase COG0502 Biotin synthase and related enzymes gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07170 amad1_07175 amad1_07175 amad1_07175 1594694 1596094 + 8-amino-7-oxononanoate synthase COG0156 7-keto-8-aminopelargonate synthetase and related enzymes gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07175 amad1_07180 amad1_07180 amad1_07180 1596094 1597071 + Biotin biosynthesis protein BioC COG0500 SAM-dependent methyltransferases gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07180 amad1_07185 amad1_07185 amad1_07185 1597068 1597769 + cobyrinic acid a%2Cc-diamide synthase:dethiobiotin synthase COG0132 Dethiobiotin synthetase gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07185 amad1_07190 amad1_07190 amad1_07190 1597740 1598462 - (alpha)-aspartyl dipeptidase COG3340 Peptidase E gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07190 amad1_07195 amad1_07195 amad1_07195 1598556 1599029 + phosphotyrosine protein phosphatase COG0394 Protein-tyrosine-phosphatase gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07195 amad1_07200 amad1_07200 amad1_07200 1599045 1600016 + putative hemin transport system permease transmembrane protein COG0609 ABC-type Fe3+-siderophore transport system%2C permease component gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07200 amad1_07205 amad1_07205 amad1_07205 1600021 1600971 + vitamin B12-transporter ATPase COG4138 ABC-type cobalamin transport system%2C ATPase component gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07205 amad1_07210 amad1_07210 amad1_07210 1601143 1602486 + phospho-2-dehydro-3-deoxyheptonate aldolase COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07210 amad1_07215 amad1_07215 amad1_07215 1602611 1602934 - hypothetical protein gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07215 amad1_07220 amad1_07220 amad1_07220 1603003 1603218 - hypothetical protein COG3530 Uncharacterized protein conserved in bacteria gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07220 amad1_07225 amad1_07225 amad1_07225 1603235 1605043 - ABC transporter ATP-binding protein COG5265 ABC-type transport system involved in Fe-S cluster assembly%2C permease and ATPase components gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07225 amad1_07230 amad1_07230 moaA moaA 1605425 1606393 + molybdenum cofactor biosynthesis protein A COG2896 Molybdenum cofactor biosynthesis enzyme gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07230 amad1_07235 amad1_07235 amad1_07235 1606533 1607051 + GCN5-related N-acetyltransferase COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07235 amad1_07240 amad1_07240 amad1_07240 1607097 1608719 - response regulator receiver protein COG0784 FOG: CheY-like receiver gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07240 amad1_07245 amad1_07245 amad1_07245 1609833 1611242 + glutamyl-tRNA synthetase COG0008 Glutamyl- and glutaminyl-tRNA synthetases gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07245 amad1_07250 amad1_07250 amad1_07250 1612491 1613399 + Zn-dependent enzyme from deacylase/carboxypeptidase superfamily protein COG3608 Predicted deacylase gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07250 amad1_07255 amad1_07255 amad1_07255 1613459 1613680 + hypothetical protein gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07255 amad1_07260 amad1_07260 amad1_07260 1613677 1613865 + hypothetical protein COG3313 Predicted Fe-S protein gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07260 amad1_07265 amad1_07265 amad1_07265 1614141 1615079 + NifR3/Smm1 family protein COG0042 tRNA-dihydrouridine synthase gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07265 amad1_07270 amad1_07270 amad1_07270 1615097 1615810 - hypothetical protein COG1943 Transposase and inactivated derivatives gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07270 amad1_07275 amad1_07275 amad1_07275 1616347 1616529 - hypothetical protein gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07275 amad1_07280 amad1_07280 amad1_07280 1616576 1617232 - lipase/acylhydrolase%2C GDSL family protein COG2755 Lysophospholipase L1 and related esterases gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07280 amad1_07285 amad1_07285 amad1_07285 1617249 1617947 + putative lipoprotein releasing system ABC transporter ATP-binding protein COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis%2C ATPase component gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07285 amad1_07290 amad1_07290 amad1_07290 1617948 1620470 + ABC transporter permease COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis%2C permease component gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07290 amad1_07295 amad1_07295 amad1_07295 1620801 1621685 - putative sugar nucleotide epimerase COG1090 Predicted nucleoside-diphosphate sugar epimerase gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07295 amad1_07300 amad1_07300 folX folX 1621721 1622089 - D-erythro-7%2C8-dihydroneopterin triphosphate 2'-epimerase COG1539 Dihydroneopterin aldolase gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07300 amad1_07305 amad1_07305 amad1_07305 1622169 1623206 + hypothetical protein COG0628 Predicted permease gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07305 amad1_07310 amad1_07310 amad1_07310 1623535 1624866 - sensor histidine kinase COG0642 Signal transduction histidine kinase gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07310 amad1_07315 amad1_07315 amad1_07315 1624863 1625537 - response regulator in two-component regulatory system with PhoQ COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07315 amad1_07320 amad1_07320 amad1_07320 1625539 1625808 - propeptide%2C pepSY amd peptidase M4 COG3212 Predicted membrane protein gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07320 amad1_07325 amad1_07325 amad1_07325 1626599 1627063 + general stress protein COG3871 Uncharacterized stress protein (general stress protein 26) gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07325 amad1_07330 amad1_07330 amad1_07330 1627340 1627639 - hypothetical protein COG2350 Uncharacterized protein conserved in bacteria gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07330 amad1_07335 amad1_07335 amad1_07335 1627645 1628454 - tryptophan synthase subunit alpha COG0159 Tryptophan synthase alpha chain gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07335 amad1_07340 amad1_07340 amad1_07340 1628454 1629635 - tryptophan synthase subunit beta COG0133 Tryptophan synthase beta chain gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07340 amad1_07345 amad1_07345 amad1_07345 1629657 1631066 - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase COG0134 Indole-3-glycerol phosphate synthase gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07345 amad1_07350 amad1_07350 amad1_07350 1631059 1632090 - anthranilate phosphoribosyltransferase COG0547 Anthranilate phosphoribosyltransferase gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07350 amad1_07355 amad1_07355 amad1_07355 1632083 1632715 - glutamine amido-transferase COG0512 Anthranilate/para-aminobenzoate synthases component II gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07355 amad1_07360 amad1_07360 amad1_07360 1632712 1634409 - anthranilate synthase component I COG0147 Anthranilate/para-aminobenzoate synthases component I gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07360 amad1_07365 amad1_07365 amad1_07365 1634771 1635583 + PHP domain-containing protein COG0613 Predicted metal-dependent phosphoesterases (PHP family) gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07365 amad1_07370 amad1_07370 amad1_07370 1635735 1636355 + Sua5/YciO/YrdC/YwlC family protein COG0009 Putative translation factor (SUA5) gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07370 amad1_07375 amad1_07375 amad1_07375 1636465 1637328 + chromosome segregation and condensation protein ScpA COG1354 Uncharacterized conserved protein gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07375 amad1_07380 amad1_07380 amad1_07380 1637315 1637908 + hypothetical protein COG1386 Predicted transcriptional regulator containing the HTH domain gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07380 amad1_07385 amad1_07385 amad1_07385 1637949 1638845 + pseudouridine synthase COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07385 amad1_07390 amad1_07390 amad1_07390 1639077 1639880 + 2%2C5-diketo-D-gluconate reductase B COG0656 Aldo/keto reductases%2C related to diketogulonate reductase gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07390 amad1_07395 amad1_07395 amad1_07395 1640067 1640639 - Acetyltransferase (isoleucine patch superfamily) protein COG0110 Acetyltransferase (isoleucine patch superfamily) gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07395 amad1_07400 amad1_07400 amad1_07400 1640676 1641347 - hypothetical protein COG3595 Uncharacterized conserved protein gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07400 amad1_07405 amad1_07405 amad1_07405 1642196 1643482 + hypothetical protein COG2733 Predicted membrane protein gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07405 amad1_07410 amad1_07410 amad1_07410 1643983 1663701 + vcbs repeat-containing protein COG3291 FOG: PKD repeat gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07410 amad1_07415 amad1_07415 amad1_07415 1663917 1664618 + hypothetical protein gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07415 amad1_07420 amad1_07420 amad1_07420 1664683 1666344 + Type I secretion system ATPase%2C PrtD COG4618 ABC-type protease/lipase transport system%2C ATPase and permease components gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07420 amad1_07425 amad1_07425 amad1_07425 1666347 1667657 + HlyD family secretion protein COG0845 Membrane-fusion protein gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07425 amad1_07430 amad1_07430 amad1_07430 1667823 1668476 - thiopurine S-methyltransferase family protein COG0500 SAM-dependent methyltransferases gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07430 amad1_07435 amad1_07435 amad1_07435 1668586 1668942 - SmpA/OmlA protein COG2913 Small protein A (tmRNA-binding) gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07435 amad1_07440 amad1_07440 amad1_07440 1669067 1670752 - DNA repair ATPase RecN COG0497 ATPase involved in DNA repair gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07440 amad1_07445 amad1_07445 amad1_07445 1671061 1671570 - stress response DNA-binding protein Dps COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07445 amad1_07450 amad1_07450 amad1_07450 1671826 1672701 - NAD kinase COG0061 Predicted sugar kinase gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07450 amad1_07455 amad1_07455 amad1_07455 1673038 1674198 + iron-containing alcohol dehydrogenase COG1454 Alcohol dehydrogenase%2C class IV gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07455 amad1_07460 amad1_07460 amad1_07460 1674319 1675086 - putative 3-hydroxybutyrate dehydrogenase COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07460 amad1_07465 amad1_07465 amad1_07465 1675079 1676140 - poly (3-hydroxybutyrate) depolymerase COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07465 amad1_07470 amad1_07470 amad1_07470 1676137 1677570 - homoserine O-acetyltransferase COG2021 Homoserine acetyltransferase gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07470 amad1_07475 amad1_07475 amad1_07475 1677635 1678930 - GntP family permease COG2610 H+/gluconate symporter and related permeases gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07475 amad1_07480 amad1_07480 amad1_07480 1679245 1681623 + putative TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07480 amad1_07485 amad1_07485 amad1_07485 1681824 1682492 + LuxR family response regulator COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07485 amad1_07490 amad1_07490 amad1_07490 1682533 1685898 - Na+/proline symporter PutP-like domain/sensory histidine kinase and receiver domain-containing protein COG0591 Na+/proline symporter gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07490 amad1_07495 amad1_07495 amad1_07495 1686159 1686782 + heat shock protein GrpE COG0576 Molecular chaperone GrpE (heat shock protein) gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07495 amad1_07500 amad1_07500 dnaK dnaK 1686900 1688828 + molecular chaperone DnaK COG0443 Molecular chaperone gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07500 amad1_07505 amad1_07505 amad1_07505 1689073 1690206 + chaperone protein DnaJ COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07505 amad1_07510 amad1_07510 amad1_07510 1690835 1691317 + cytochrome c COG3909 Cytochrome c556 gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07510 amad1_07515 amad1_07515 amad1_07515 1691765 1694341 + sensory box/GGDEF/EAL domain-containing protein COG2202 FOG: PAS/PAC domain gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07515 amad1_07520 amad1_07520 amad1_07520 1694489 1696393 + Propionyl CoA synthase COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07520 amad1_07525 amad1_07525 amad1_07525 1696613 1697296 - cytochrome b561 family protein COG3658 Cytochrome b gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07525 amad1_07530 amad1_07530 amad1_07530 1697718 1698521 + dihydrodipicolinate reductase COG0289 Dihydrodipicolinate reductase gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07530 amad1_07535 amad1_07535 amad1_07535 1698873 1700003 + carbamoyl-phosphate synthase small subunit COG0505 Carbamoylphosphate synthase small subunit gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07535 amad1_07540 amad1_07540 carB carB 1700017 1703238 + carbamoyl phosphate synthase large subunit COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07540 amad1_07545 amad1_07545 amad1_07545 1703356 1703832 + transcription elongation factor GreA COG0782 Transcription elongation factor gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07545 amad1_07550 amad1_07550 amad1_07550 1704094 1704633 + hypothetical protein COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07550 amad1_07555 amad1_07555 amad1_07555 1704719 1705111 + hypothetical protein gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07555 amad1_07560 amad1_07560 amad1_07560 1705221 1705670 - small heat shock protein COG0071 Molecular chaperone (small heat shock protein) gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07560 amad1_07565 amad1_07565 amad1_07565 1706085 1707266 + acetate/propionate kinase COG0282 Acetate kinase gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07565 amad1_07570 amad1_07570 amad1_07570 1707311 1709449 + phosphate acetyltransferase COG0857 BioD-like N-terminal domain of phosphotransacetylase gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07570 amad1_07575 amad1_07575 amad1_07575 1709641 1709889 + Antitoxin of toxin-antitoxin system Phd COG2161 Antitoxin of toxin-antitoxin stability system gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07575 amad1_07580 amad1_07580 amad1_07580 1709889 1710203 + plasmid stabilization system COG3668 Plasmid stabilization system protein gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07580 amad1_07585 amad1_07585 amad1_07585 1710353 1711789 - apolipoprotein N-acyltransferase COG0815 Apolipoprotein N-acyltransferase gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07585 amad1_07590 amad1_07590 amad1_07590 1711974 1712831 - Mg/Co transporter COG4535 Putative Mg2+ and Co2+ transporter CorC gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07590 amad1_07595 amad1_07595 amad1_07595 1712947 1713423 - hypothetical protein COG0319 Predicted metal-dependent hydrolase gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07595 amad1_07600 amad1_07600 amad1_07600 1713420 1714541 - putative ATP-binding protein COG1702 Phosphate starvation-inducible protein PhoH%2C predicted ATPase gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07600 amad1_07605 amad1_07605 amad1_07605 1714570 1716003 - (dimethylallyl)adenosine tRNA methylthiotransferase COG0621 2-methylthioadenine synthetase gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07605 amad1_07610 amad1_07610 amad1_07610 1716322 1717521 + 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07610 amad1_07615 amad1_07615 amad1_07615 1717521 1717697 + hypothetical protein gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07615 amad1_07620 amad1_07620 amad1_07620 1717783 1718265 + hypothetical protein gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07620 amad1_07625 amad1_07625 amad1_07625 1718344 1718934 - TetR family transcriptional regulator COG1309 Transcriptional regulator gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07625 amad1_07630 amad1_07630 amad1_07630 1719087 1719638 + putative alkylhydroperoxidase COG2128 Uncharacterized conserved protein gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07630 amad1_07635 amad1_07635 amad1_07635 1719710 1719892 - hypothetical protein gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07635 amad1_07640 amad1_07640 amad1_07640 1720082 1720252 + hypothetical protein gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07640 amad1_07645 amad1_07645 amad1_07645 1720311 1720418 + hypothetical protein gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07645 amad1_07650 amad1_07650 amad1_07650 1720837 1723398 + putative TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07650 amad1_07655 amad1_07655 amad1_07655 1723566 1724123 - Thioesterase superfamily protein COG1607 Acyl-CoA hydrolase gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07655 amad1_07660 amad1_07660 amad1_07660 1724211 1724831 + hypothetical protein COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases%2C DIM6/NTAB family gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07660 amad1_07665 amad1_07665 amad1_07665 1724882 1725538 + transcription negative regulator COG3806 Anti-sigma factor gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07665 amad1_07670 amad1_07670 amad1_07670 1725665 1727071 - putative amino acid permease COG1115 Na+/alanine symporter gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07670 amad1_07675 amad1_07675 amad1_07675 1728365 1729402 - cyclophilin type peptidyl-prolyl cis-trans isomerase COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07675 amad1_07680 amad1_07680 amad1_07680 1729528 1730619 - GTP-binding protein YchF COG0012 Predicted GTPase%2C probable translation factor gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07680 amad1_07685 amad1_07685 amad1_07685 1730662 1731243 - peptidyl-tRNA hydrolase COG0193 Peptidyl-tRNA hydrolase gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07685 amad1_07690 amad1_07690 amad1_07690 1731178 1731336 + hypothetical protein gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07690 amad1_07695 amad1_07695 amad1_07695 1731249 1731881 - 50S ribosomal protein L25/general stress protein Ctc COG1825 Ribosomal protein L25 (general stress protein Ctc) gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07695 amad1_07700 amad1_07700 amad1_07700 1732194 1733195 - zinc-containing alcohol dehydrogenase family protein COG1064 Zn-dependent alcohol dehydrogenases gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07700 amad1_07705 amad1_07705 amad1_07705 1733310 1733765 - ribose-phosphate pyrophosphokinase gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07705 amad1_07710 amad1_07710 amad1_07710 1734434 1734739 + hypothetical protein gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07710 amad1_07715 amad1_07715 amad1_07715 1734856 1735803 - ribose-phosphate pyrophosphokinase COG0462 Phosphoribosylpyrophosphate synthetase gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07715 amad1_07720 amad1_07720 ipk ipk 1735946 1736851 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07720 amad1_07725 amad1_07725 amad1_07725 1736851 1737477 - outer membrane lipoprotein LolB COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07725 amad1_07730 amad1_07730 amad1_07730 1737609 1738883 + shikimate/quinate 5-dehydrogenase COG0373 Glutamyl-tRNA reductase gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07730 amad1_07735 amad1_07735 prfA prfA 1738899 1739984 + peptide chain release factor 1 COG0216 Protein chain release factor A gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07735 amad1_07740 amad1_07740 amad1_07740 1739986 1740843 + N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase COG2890 Methylase of polypeptide chain release factors gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07740 amad1_07745 amad1_07745 amad1_07745 1740994 1742559 + response regulator COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07745 amad1_07750 amad1_07750 amad1_07750 1742780 1743151 + Invasion gene expression up-regulator SirB COG3094 Uncharacterized protein conserved in bacteria gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07750 amad1_07755 amad1_07755 amad1_07755 1743172 1744026 + 2-dehydro-3-deoxyphosphooctonate aldolase COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07755 amad1_07760 amad1_07760 amad1_07760 1744088 1744375 - hypothetical protein gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07760 amad1_07765 amad1_07765 amad1_07765 1744592 1745494 + DNA-binding transcriptional activator GcvA COG0583 Transcriptional regulator gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07765 amad1_07770 amad1_07770 amad1_07770 1745497 1746177 + alpha/beta-hydrolase fold hydrolase COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07770 amad1_07775 amad1_07775 amad1_07775 1746182 1746634 + hypothetical protein COG2363 Uncharacterized small membrane protein gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07775 amad1_07780 amad1_07780 amad1_07780 1746627 1747724 + 23S rRNA C2498 ribose 2'-O-ribose methyltransferase COG2933 Predicted SAM-dependent methyltransferase gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07780 amad1_07785 amad1_07785 amad1_07785 1747908 1749995 + elongation factor G COG0480 Translation elongation factors (GTPases) gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07785 amad1_07790 amad1_07790 amad1_07790 1750099 1750302 - cyanate hydratase COG1513 Cyanate lyase gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07790 amad1_07795 amad1_07795 amad1_07795 1750538 1750813 - cyanate hydratase COG1513 Cyanate lyase gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07795 amad1_07800 amad1_07800 amad1_07800 1750844 1752661 - Serine/threonine protein kinase COG0631 Serine/threonine protein phosphatase gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07800 amad1_07805 amad1_07805 amad1_07805 1752797 1753645 - Formate/nitrite transporter COG2116 Formate/nitrite family of transporters gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07805 amad1_07810 amad1_07810 amad1_07810 1754222 1756288 - transglutaminase family protein COG1305 Transglutaminase-like enzymes%2C putative cysteine proteases gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07810 amad1_07815 amad1_07815 amad1_07815 1756285 1757409 - hypothetical protein COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07815 amad1_07820 amad1_07820 amad1_07820 1757482 1758429 - MoxR protein COG0714 MoxR-like ATPases gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07820 amad1_07825 amad1_07825 amad1_07825 1758736 1759527 + replication initiation regulator SeqA COG3057 Negative regulator of replication initiationR gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07825 amad1_07830 amad1_07830 amad1_07830 1759573 1761225 + phosphoglucomutase COG0033 Phosphoglucomutase gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07830 amad1_07835 amad1_07835 amad1_07835 1761443 1763920 + glycogen/starch/alpha-glucan phosphorylase COG0058 Glucan phosphorylase gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07835 amad1_07840 amad1_07840 amad1_07840 1764192 1765496 + sensory box/GGDEF domain/EAL domain-containing protein COG5001 Predicted signal transduction protein containing a membrane domain%2C an EAL and a GGDEF domain gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07840 amad1_07845 amad1_07845 amad1_07845 1765723 1766754 + succinylglutamate desuccinylase COG2988 Succinylglutamate desuccinylase gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07845 amad1_07850 amad1_07850 amad1_07850 1766747 1767157 + putative HIT family hydrolase COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07850 amad1_07855 amad1_07855 amad1_07855 1767216 1767542 + hypothetical protein COG0393 Uncharacterized conserved protein gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07855 amad1_07860 amad1_07860 amad1_07860 1767671 1768924 - proton/glutamate symporter COG1301 Na+/H+-dicarboxylate symporters gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07860 amad1_07865 amad1_07865 amad1_07865 1769075 1769374 - hypothetical protein gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07865 amad1_07870 amad1_07870 amad1_07870 1769371 1770069 - D-alanyl-D-alanine carboxypeptidase COG1876 D-alanyl-D-alanine carboxypeptidase gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07870 amad1_07875 amad1_07875 amad1_07875 1770085 1771221 - succinyl-diaminopimelate desuccinylase COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07875 amad1_07880 amad1_07880 amad1_07880 1771215 1771562 - arsenate reductase COG1393 Arsenate reductase and related proteins%2C glutaredoxin family gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07880 amad1_07885 amad1_07885 amad1_07885 1771747 1772265 - hypothetical protein COG2190 Phosphotransferase system IIA components gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07885 amad1_07890 amad1_07890 amad1_07890 1772252 1772641 - amino acid-binding ACT domain-containing protein COG3603 Uncharacterized conserved protein gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07890 amad1_07895 amad1_07895 amad1_07895 1773140 1773505 + glyoxalase family protein COG3324 Predicted enzyme related to lactoylglutathione lyase gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07895 amad1_07900 amad1_07900 amad1_07900 1773723 1774796 - 4-hydroxyphenylpyruvate dioxygenase COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07900 amad1_07905 amad1_07905 amad1_07905 1775054 1776349 - homogentisate 1%2C2-dioxygenase COG3508 Homogentisate 1%2C2-dioxygenase gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07905 amad1_07910 amad1_07910 amad1_07910 1776514 1776681 + hypothetical protein gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07910 amad1_07915 amad1_07915 amad1_07915 1776668 1777096 + putative regulatory protein MarR COG1846 Transcriptional regulators gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07915 amad1_07920 amad1_07920 amad1_07920 1777256 1778332 + hypothetical protein gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07920 amad1_07925 amad1_07925 amad1_07925 1778892 1779977 + putative cell division protein FtsZ COG0206 Cell division GTPase gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07925 amad1_07930 amad1_07930 amad1_07930 1779974 1781014 - transcriptional factor gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07930 amad1_07935 amad1_07935 amad1_07935 1781373 1783094 + putative diguanylate cyclase/phosphodiesterase COG5001 Predicted signal transduction protein containing a membrane domain%2C an EAL and a GGDEF domain gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07935 amad1_07940 amad1_07940 amad1_07940 1783226 1785160 - diguanylate cyclase/phosphodiesterase COG2199 FOG: GGDEF domain gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07940 amad1_07945 amad1_07945 amad1_07945 1785492 1788539 - acriflavin resistance protein ei VT8 COG0841 Cation/multidrug efflux pump gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07945 amad1_07950 amad1_07950 amad1_07950 1788543 1789676 - putative multidrug resistance protein COG0845 Membrane-fusion protein gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07950 amad1_07955 amad1_07955 amad1_07955 1789923 1791857 - glutathione-regulated potassium-efflux system protein KefC COG0475 Kef-type K+ transport systems%2C membrane components gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07955 amad1_07960 amad1_07960 amad1_07960 1791859 1792497 - putative NADPH-quinone reductase COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07960 amad1_07965 amad1_07965 amad1_07965 1792758 1793252 + hypothetical protein gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07965 amad1_07970 amad1_07970 amad1_07970 1793427 1795724 - membrane-bound aldehyde dehydrogenase%2C large subunit COG1529 Aerobic-type carbon monoxide dehydrogenase%2C large subunit CoxL/CutL homologs gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07970 amad1_07975 amad1_07975 amad1_07975 1795721 1796212 - putative aldehyde dehydrogenase subunit III COG2080 Aerobic-type carbon monoxide dehydrogenase%2C small subunit CoxS/CutS homologs gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07975 amad1_07980 amad1_07980 amad1_07980 1796412 1796771 + transcriptional regulator COG1733 Predicted transcriptional regulators gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07980 amad1_07985 amad1_07985 amad1_07985 1797001 1798278 + putative diguanylate cyclase/phosphodiesterase/response regulator COG2202 FOG: PAS/PAC domain gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07985 amad1_07990 amad1_07990 amad1_07990 1798305 1799585 - membrane protein COG3748 Predicted membrane protein gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07990 amad1_07995 amad1_07995 amad1_07995 1799617 1800924 - guanine deaminase COG0402 Cytosine deaminase and related metal-dependent hydrolases gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_07995 amad1_08000 amad1_08000 amad1_08000 1800930 1801262 - transthyretin COG2351 Transthyretin-like protein gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08000 amad1_08005 amad1_08005 amad1_08005 1801309 1801812 - OHCU decarboxylase COG3195 Uncharacterized protein conserved in bacteria gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08005 amad1_08010 amad1_08010 amad1_08010 1801799 1802740 - Xanthine and CO dehydrogenase maturation factor%2C XdhC/CoxF family protein COG1975 Xanthine and CO dehydrogenases maturation factor%2C XdhC/CoxF family gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08010 amad1_08015 amad1_08015 amad1_08015 1802737 1805103 - xanthine dehydrogenase%2C molybdopterin binding subunit COG4631 Xanthine dehydrogenase%2C molybdopterin-binding subunit B gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08015 amad1_08020 amad1_08020 amad1_08020 1805096 1806538 - putative xanthine dehydrogenase subunit XdhA COG4630 Xanthine dehydrogenase%2C iron-sulfur cluster and FAD-binding subunit A gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08020 amad1_08025 amad1_08025 amad1_08025 1806575 1806829 - hypothetical protein gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08025 amad1_08030 amad1_08030 amad1_08030 1806919 1807563 + TetR family transcriptional regulator COG1309 Transcriptional regulator gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08030 amad1_08035 amad1_08035 amad1_08035 1807565 1808494 + hypothetical protein COG0726 Predicted xylanase/chitin deacetylase gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08035 amad1_08040 amad1_08040 amad1_08040 1808584 1808841 + hypothetical protein gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08040 amad1_08045 amad1_08045 amad1_08045 1808978 1810309 - xanthine/uracil/vitamin C permease COG2252 Permeases gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08045 amad1_08050 amad1_08050 amad1_08050 1810631 1811641 + adenosine deaminase COG1816 Adenosine deaminase gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08050 amad1_08055 amad1_08055 amad1_08055 1811742 1812104 - sensor/response hybrid COG0784 FOG: CheY-like receiver gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08055 amad1_08060 amad1_08060 amad1_08060 1812293 1812589 + response regulator COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08060 amad1_08065 amad1_08065 amad1_08065 1812640 1812879 + response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) COG2200 FOG: EAL domain gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08065 amad1_08070 amad1_08070 amad1_08070 1813237 1813998 + putative response regulator COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08070 amad1_08075 amad1_08075 amad1_08075 1814161 1816164 + Signal transduction histidine kinase COG0642 Signal transduction histidine kinase gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08075 amad1_08080 amad1_08080 amad1_08080 1816199 1816447 - hypothetical protein gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08080 amad1_08085 amad1_08085 amad1_08085 1816594 1819023 - TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08085 amad1_08090 amad1_08090 amad1_08090 1819267 1820820 - xanthine/uracil permease family protein COG2233 Xanthine/uracil permeases gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08090 amad1_08095 amad1_08095 amad1_08095 1821329 1821694 - hypothetical protein COG1917 Uncharacterized conserved protein%2C contains double-stranded beta-helix domain gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08095 amad1_08100 amad1_08100 amad1_08100 1821813 1823048 - allantoate amidohydrolase COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08100 amad1_08105 amad1_08105 amad1_08105 1823041 1824321 - class V aminotransferase COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08105 amad1_08110 amad1_08110 amad1_08110 1824332 1825150 - hypothetical protein COG0730 Predicted permeases gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08110 amad1_08115 amad1_08115 amad1_08115 1825222 1826799 - gamma-glutamyltransferase COG0405 Gamma-glutamyltransferase gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08115 amad1_08120 amad1_08120 amad1_08120 1826919 1828190 - amidase COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08120 amad1_08125 amad1_08125 amad1_08125 1828233 1828406 - hypothetical protein gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08125 amad1_08130 amad1_08130 amad1_08130 1828438 1829001 - hypothetical protein COG3803 Uncharacterized protein conserved in bacteria gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08130 amad1_08135 amad1_08135 amad1_08135 1829156 1829989 - putative rpiR-family transcriptional regulatory protein COG1737 Transcriptional regulators gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08135 amad1_08140 amad1_08140 amad1_08140 1830404 1831030 + Abortive infection protein COG1266 Predicted metal-dependent membrane protease gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08140 amad1_08145 amad1_08145 amad1_08145 1831085 1832239 + putative mechanosensitive channel protein COG0668 Small-conductance mechanosensitive channel gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08145 amad1_08150 amad1_08150 amad1_08150 1832246 1833319 - hypothetical protein gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08150 amad1_08155 amad1_08155 amad1_08155 1833316 1834065 - pteridine reductase COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08155 amad1_08160 amad1_08160 amad1_08160 1834117 1835001 - hypothetical protein COG3001 Fructosamine-3-kinase gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08160 amad1_08165 amad1_08165 thrS thrS 1835459 1837375 + threonyl-tRNA ligase COG0441 Threonyl-tRNA synthetase gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08165 amad1_08170 amad1_08170 amad1_08170 1837596 1838030 + translation initiation factor 3 COG0290 Translation initiation factor 3 (IF-3) gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08170 amad1_08175 amad1_08175 rpmI rpmI 1838149 1838346 + 50S ribosomal protein L35 COG0291 Ribosomal protein L35 gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08175 amad1_08180 amad1_08180 amad1_08180 1838365 1838721 + 50S ribosomal protein L20 COG0292 Ribosomal protein L20 gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08180 amad1_08185 amad1_08185 amad1_08185 1838795 1839067 - mannose-1-phosphate guanylyltransferase COG0662 Mannose-6-phosphate isomerase gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08185 amad1_08190 amad1_08190 amad1_08190 1839162 1840616 - lipopolysaccharide synthesis sugar transferase COG2148 Sugar transferases involved in lipopolysaccharide synthesis gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08190 amad1_08195 amad1_08195 amad1_08195 1841159 1842364 + hypothetical protein gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08195 amad1_08200 amad1_08200 amad1_08200 1842361 1842909 + polysaccharide export periplasmic protein COG1596 Periplasmic protein involved in polysaccharide export gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08200 amad1_08205 amad1_08205 amad1_08205 1842938 1845130 + putative Exopolysaccharide biosynthesis protein COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08205 amad1_08210 amad1_08210 amad1_08210 1845140 1845871 + capsular polysaccharide biosynthesis protein COG4464 Capsular polysaccharide biosynthesis protein gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08210 amad1_08215 amad1_08215 amad1_08215 1845861 1846616 + hypothetical protein COG0457 FOG: TPR repeat gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08215 amad1_08220 amad1_08220 amad1_08220 1846629 1847039 - hypothetical protein gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08220 amad1_08225 amad1_08225 amad1_08225 1847073 1848485 - O-antigen polymerase COG3307 Lipid A core - O-antigen ligase and related enzymes gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08225 amad1_08230 amad1_08230 amad1_08230 1848527 1849096 - hypothetical protein gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08230 amad1_08235 amad1_08235 amad1_08235 1849213 1851153 - diguanylate cyclase/phosphodiesterase COG2199 FOG: GGDEF domain gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08235 amad1_08240 amad1_08240 amad1_08240 1851153 1851779 - hypothetical protein COG3672 Predicted periplasmic protein gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08240 amad1_08245 amad1_08245 amad1_08245 1852132 1853364 + O-antigen polymerase COG3307 Lipid A core - O-antigen ligase and related enzymes gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08245 amad1_08250 amad1_08250 amad1_08250 1853452 1854399 + hypothetical protein gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08250 amad1_08255 amad1_08255 amad1_08255 1854558 1855589 + hypothetical protein gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08255 amad1_08260 amad1_08260 amad1_08260 1855766 1857229 + polysaccharide biosynthesis protein gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08260 amad1_08265 amad1_08265 amad1_08265 1857303 1858271 + family 2 glycosyl transferase COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08265 amad1_08270 amad1_08270 amad1_08270 1858384 1859388 + hypothetical protein COG2327 Uncharacterized conserved protein gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08270 amad1_08275 amad1_08275 amad1_08275 1859531 1860142 + hypothetical protein gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08275 amad1_08280 amad1_08280 amad1_08280 1860476 1861309 + glycosyl transferase family protein COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08280 amad1_08285 amad1_08285 amad1_08285 1861306 1862517 + glycosyl transferase family protein COG0438 Glycosyltransferase gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08285 amad1_08290 amad1_08290 amad1_08290 1862518 1863693 + family 2 glycosyl transferase COG1215 Glycosyltransferases%2C probably involved in cell wall biogenesis gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08290 amad1_08295 amad1_08295 amad1_08295 1863705 1864424 - WecB/TagA/CpsF family glycosyl transferase COG1922 Teichoic acid biosynthesis proteins gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08295 amad1_08300 amad1_08300 amad1_08300 1864629 1865423 - hypothetical protein gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08300 amad1_08305 amad1_08305 amad1_08305 1865549 1867984 - hypothetical protein gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08305 amad1_08310 amad1_08310 amad1_08310 1868317 1869297 + phenylalanyl-tRNA synthetase subunit alpha COG0016 Phenylalanyl-tRNA synthetase alpha subunit gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08310 amad1_08315 amad1_08315 pheT pheT 1869312 1871699 + phenylalanyl-tRNA ligase subunit beta COG0073 EMAP domain gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08315 amad1_08320 amad1_08320 ihfA ihfA 1871703 1872002 + integration host factor subunit alpha COG0776 Bacterial nucleoid DNA-binding protein gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08320 amad1_08325 amad1_08325 amad1_08325 1872118 1872663 + hypothetical protein gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08325 amad1_08330 amad1_08330 amad1_08330 1872817 1873287 - ybaK/ebsC protein COG2606 Uncharacterized conserved protein gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08330 amad1_08335 amad1_08335 amad1_08335 1873284 1875635 - putative hydrolase COG2366 Protein related to penicillin acylase gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08335 amad1_08340 amad1_08340 amad1_08340 1875734 1876744 + beta-hexosaminidase COG1472 Beta-glucosidase-related glycosidases gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08340 amad1_08345 amad1_08345 amad1_08345 1876751 1877266 - putative vitamin B12 related Cobalamin adenosyltransferase COG2096 Uncharacterized conserved protein gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08345 amad1_08350 amad1_08350 amad1_08350 1877414 1878961 - hypothetical protein gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08350 amad1_08355 amad1_08355 amad1_08355 1878963 1882460 - transcription-repair coupling factor COG1197 Transcription-repair coupling factor (superfamily II helicase) gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08355 amad1_08360 amad1_08360 amad1_08360 1882523 1883122 - hypothetical protein gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08360 amad1_08365 amad1_08365 amad1_08365 1883297 1884712 + lipoprotein releasing system transmembrane protein LolE COG4591 ABC-type transport system%2C involved in lipoprotein release%2C permease component gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08365 amad1_08370 amad1_08370 amad1_08370 1884790 1885353 + putative hypoxanthine phosphoribosyltransferase COG2236 Predicted phosphoribosyltransferases gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08370 amad1_08375 amad1_08375 amad1_08375 1885365 1886813 - sensor histidine kinase COG0642 Signal transduction histidine kinase gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08375 amad1_08380 amad1_08380 amad1_08380 1886810 1887985 - hypothetical protein COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08380 amad1_08385 amad1_08385 amad1_08385 1888075 1888716 - hypothetical protein COG3235 Predicted membrane protein gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08385 amad1_08390 amad1_08390 amad1_08390 1888754 1889563 - exodeoxyribonuclease III COG0708 Exonuclease III gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08390 amad1_08395 amad1_08395 amad1_08395 1889725 1890510 - hypothetical protein gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08395 amad1_08400 amad1_08400 amad1_08400 1890681 1891076 + hypothetical protein gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08400 amad1_08405 amad1_08405 amad1_08405 1891091 1891483 + putative selenocysteine lyase COG2166 SufE protein probably involved in Fe-S center assembly gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08405 amad1_08410 amad1_08410 amad1_08410 1891520 1892791 - putative glycosyltransferase COG0438 Glycosyltransferase gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08410 amad1_08415 amad1_08415 amad1_08415 1893290 1894135 + putative signal transduction protein COG1639 Predicted signal transduction protein gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08415 amad1_08420 amad1_08420 amad1_08420 1894172 1894987 - putative acyl-CoA thioesterase%2C TesB family protein COG1946 Acyl-CoA thioesterase gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08420 amad1_08425 amad1_08425 amad1_08425 1895158 1896480 + major facilitator family transporter COG0477 Permeases of the major facilitator superfamily gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08425 amad1_08430 amad1_08430 amad1_08430 1896553 1897356 + acyltransferase 3 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08430 amad1_08435 amad1_08435 glgC glgC 1897401 1898687 - glucose-1-phosphate adenylyltransferase COG0448 ADP-glucose pyrophosphorylase gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08435 amad1_08440 amad1_08440 amad1_08440 1899270 1899803 + hypothetical protein gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08440 amad1_08445 amad1_08445 amad1_08445 1899894 1900019 - hypothetical protein gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08445 amad1_08450 amad1_08450 amad1_08450 1900093 1901034 + permease of the major facilitator superfamily protein gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08450 amad1_08455 amad1_08455 amad1_08455 1901042 1902028 - hypothetical protein COG1943 Transposase and inactivated derivatives gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08455 amad1_08460 amad1_08460 amad1_08460 1902423 1903319 - hydroxymethylglutaryl-CoA lyase COG0119 Isopropylmalate/homocitrate/citramalate synthases gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08460 amad1_08465 amad1_08465 amad1_08465 1903324 1905324 - methylcrotonyl-CoA carboxylase subunit alpha COG4770 Acetyl/propionyl-CoA carboxylase%2C alpha subunit gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08465 amad1_08470 amad1_08470 amad1_08470 1905314 1906114 - Enoyl-CoA hydratase/isomerase COG1024 Enoyl-CoA hydratase/carnithine racemase gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08470 amad1_08475 amad1_08475 amad1_08475 1906126 1907733 - methylcrotonyl CoA carboxylase subunit beta COG4799 Acetyl-CoA carboxylase%2C carboxyltransferase component (subunits alpha and beta) gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08475 amad1_08480 amad1_08480 amad1_08480 1907948 1909117 - isovaleryl-CoA dehydrogenase COG1960 Acyl-CoA dehydrogenases gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08480 amad1_08485 amad1_08485 amad1_08485 1909114 1909521 - transcriptional regulator%2C MerR family protein COG0789 Predicted transcriptional regulators gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08485 amad1_08490 amad1_08490 amad1_08490 1909867 1911042 + acetyl-CoA acetyltransferase with thiolase domain COG0183 Acetyl-CoA acetyltransferase gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08490 amad1_08495 amad1_08495 amad1_08495 1911136 1912275 + putative lipase/esterase COG0657 Esterase/lipase gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08495 amad1_08500 amad1_08500 amad1_08500 1912268 1913503 + Kynureninase COG3844 Kynureninase gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08500 amad1_08505 amad1_08505 amad1_08505 1913528 1915039 + GGDEF domain protein COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08505 amad1_08510 amad1_08510 amad1_08510 1915238 1916893 - hypothetical protein COG1315 Predicted polymerase%2C most proteins contain PALM domain%2C HD hydrolase domain and Zn-ribbon domain gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08510 amad1_08515 amad1_08515 amad1_08515 1917020 1918507 - exodeoxyribonuclease I COG2925 Exonuclease I gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08515 amad1_08520 amad1_08520 amad1_08520 1918623 1919828 + phage integrase family site specific recombinase COG0582 Integrase gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08520 amad1_08525 amad1_08525 amad1_08525 1919811 1920080 - hypothetical protein gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08525 amad1_08530 amad1_08530 amad1_08530 1920080 1920343 - hypothetical protein gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08530 amad1_08535 amad1_08535 amad1_08535 1920336 1920923 - hypothetical protein gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08535 amad1_08540 amad1_08540 amad1_08540 1920920 1921420 - hypothetical protein gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08540 amad1_08545 amad1_08545 amad1_08545 1921420 1921653 - hypothetical protein gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08545 amad1_08550 amad1_08550 amad1_08550 1921650 1922426 - hypothetical protein gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08550 amad1_08555 amad1_08555 amad1_08555 1922423 1922611 - hypothetical protein gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08555 amad1_08560 amad1_08560 amad1_08560 1922650 1923828 - cell division protein FtsK COG2974 DNA recombination-dependent growth factor C gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08560 amad1_08565 amad1_08565 amad1_08565 1923870 1924259 - hypothetical protein gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08565 amad1_08570 amad1_08570 amad1_08570 1924259 1926004 - hypothetical protein gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08570 amad1_08575 amad1_08575 amad1_08575 1926007 1926921 - RecT protein COG3723 Recombinational DNA repair protein (RecE pathway) gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08575 amad1_08580 amad1_08580 amad1_08580 1927072 1927374 - hypothetical protein gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08580 amad1_08585 amad1_08585 amad1_08585 1927456 1928079 - hypothetical protein COG4886 Leucine-rich repeat (LRR) protein gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08585 amad1_08590 amad1_08590 amad1_08590 1928036 1928263 - hypothetical protein gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08590 amad1_08595 amad1_08595 amad1_08595 1928170 1928469 - hypothetical protein gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08595 amad1_08600 amad1_08600 amad1_08600 1928690 1928893 - hypothetical protein gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08600 amad1_08605 amad1_08605 amad1_08605 1928890 1929318 - LuxR family transcriptional regulator COG2771 DNA-binding HTH domain-containing proteins gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08605 amad1_08610 amad1_08610 amad1_08610 1929318 1929650 - hypothetical protein gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08610 amad1_08615 amad1_08615 amad1_08615 1929647 1930030 - hypothetical protein gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08615 amad1_08620 amad1_08620 amad1_08620 1930042 1930803 - hypothetical protein COG3617 Prophage antirepressor gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08620 amad1_08625 amad1_08625 amad1_08625 1930959 1931186 - hypothetical protein gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08625 amad1_08630 amad1_08630 amad1_08630 1931202 1932065 - hypothetical protein gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08630 amad1_08635 amad1_08635 amad1_08635 1932058 1932804 - hypothetical protein COG0173 Aspartyl-tRNA synthetase gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08635 amad1_08640 amad1_08640 amad1_08640 1932813 1933199 - e14 prophage%3B repressor protein phage e14 COG1190 Lysyl-tRNA synthetase (class II) gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08640 amad1_08645 amad1_08645 amad1_08645 1933288 1933500 + DNA-binding transcriptional regulator gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08645 amad1_08650 amad1_08650 amad1_08650 1933517 1933705 + hypothetical protein gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08650 amad1_08655 amad1_08655 amad1_08655 1933762 1933959 + hypothetical protein gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08655 amad1_08660 amad1_08660 amad1_08660 1933987 1934343 - hypothetical protein gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08660 amad1_08665 amad1_08665 amad1_08665 1934814 1935032 + hypothetical protein gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08665 amad1_08670 amad1_08670 amad1_08670 1935022 1935336 + hypothetical protein gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08670 amad1_08675 amad1_08675 amad1_08675 1935598 1935927 + hypothetical protein gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08675 amad1_08680 amad1_08680 amad1_08680 1936396 1936578 + hypothetical protein gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08680 amad1_08685 amad1_08685 amad1_08685 1936571 1937431 + replication protein O gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08685 amad1_08690 amad1_08690 amad1_08690 1937418 1938803 + replicative DNA helicase COG0305 Replicative DNA helicase gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08690 amad1_08695 amad1_08695 amad1_08695 1938800 1939051 + SOS-response transcriptional repressor%2C LexA COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08695 amad1_08700 amad1_08700 amad1_08700 1939051 1939335 + hypothetical protein gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08700 amad1_08705 amad1_08705 amad1_08705 1939332 1939868 + phage DNA methyltransferase gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08705 amad1_08710 amad1_08710 amad1_08710 1939865 1940596 + hypothetical protein COG0338 Site-specific DNA methylase gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08710 amad1_08715 amad1_08715 amad1_08715 1940766 1941350 + putative phage-like protein COG0144 tRNA and rRNA cytosine-C5-methylases gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08715 amad1_08720 amad1_08720 amad1_08720 1941350 1941781 + hypothetical protein gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08720 amad1_08725 amad1_08725 amad1_08725 1941778 1941963 + hypothetical protein gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08725 amad1_08730 amad1_08730 amad1_08730 1942007 1942285 + hypothetical protein gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08730 amad1_08735 amad1_08735 amad1_08735 1942293 1942862 + recombination Protein ninG gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08735 amad1_08740 amad1_08740 amad1_08740 1942884 1943402 + hypothetical protein gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08740 amad1_08745 amad1_08745 amad1_08745 1943532 1943750 + hypothetical protein gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08745 amad1_08750 amad1_08750 amad1_08750 1943896 1944195 + hypothetical protein COG0466 ATP-dependent Lon protease%2C bacterial type gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08750 amad1_08755 amad1_08755 amad1_08755 1944382 1944810 + L-alanyl-D-glutamate peptidase gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08755 amad1_08760 amad1_08760 amad1_08760 1944819 1945052 + hypothetical protein gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08760 amad1_08765 amad1_08765 amad1_08765 1945049 1945564 + hypothetical protein gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08765 amad1_08770 amad1_08770 amad1_08770 1945636 1945908 + hypothetical protein gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08770 amad1_08775 amad1_08775 amad1_08775 1945911 1946207 + hypothetical protein gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08775 amad1_08780 amad1_08780 amad1_08780 1946219 1946773 + phage terminase small subunit COG3728 Phage terminase%2C small subunit gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08780 amad1_08785 amad1_08785 amad1_08785 1946843 1948357 + putative phage terminase large subunit gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08785 amad1_08790 amad1_08790 amad1_08790 1948357 1950336 + hypothetical protein gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08790 amad1_08795 amad1_08795 amad1_08795 1950333 1950575 + hypothetical protein gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08795 amad1_08800 amad1_08800 amad1_08800 1950712 1951689 + hypothetical protein gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08800 amad1_08805 amad1_08805 amad1_08805 1951713 1952645 + hypothetical protein gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08805 amad1_08810 amad1_08810 amad1_08810 1952713 1952934 + hypothetical protein gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08810 amad1_08815 amad1_08815 amad1_08815 1952950 1953621 + hypothetical protein gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08815 amad1_08820 amad1_08820 amad1_08820 1953605 1954216 + hypothetical protein gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08820 amad1_08825 amad1_08825 amad1_08825 1954327 1958544 + hypothetical protein gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08825 amad1_08830 amad1_08830 amad1_08830 1958541 1958996 + hypothetical protein gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08830 amad1_08835 amad1_08835 amad1_08835 1958993 1960651 + hypothetical protein gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08835 amad1_08840 amad1_08840 amad1_08840 1960644 1962500 + hypothetical protein COG4733 Phage-related protein%2C tail component gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08840 amad1_08845 amad1_08845 amad1_08845 1962487 1962870 + hypothetical protein gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08845 amad1_08850 amad1_08850 amad1_08850 1963116 1963496 + hypothetical protein gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08850 amad1_08855 amad1_08855 amad1_08855 1963498 1964079 + hypothetical protein gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08855 amad1_08860 amad1_08860 amad1_08860 1964079 1964546 + hypothetical protein gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08860 amad1_08865 amad1_08865 amad1_08865 1964560 1965006 + hypothetical protein gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08865 amad1_08870 amad1_08870 amad1_08870 1965006 1966283 + hypothetical protein gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08870 amad1_08875 amad1_08875 amad1_08875 1966291 1974171 + hypothetical protein gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08875 amad1_08880 amad1_08880 amad1_08880 1974736 1978446 + putative sensor protein COG0642 Signal transduction histidine kinase gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08880 amad1_08885 amad1_08885 amad1_08885 1978566 1979609 + asparaginase family protein COG1446 Asparaginase gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08885 amad1_08890 amad1_08890 amad1_08890 1979774 1980193 + CBS domain-containing protein COG0517 FOG: CBS domain gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08890 amad1_08895 amad1_08895 amad1_08895 1980271 1982595 - putative phytase domain-containing protein COG4247 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08895 amad1_08900 amad1_08900 amad1_08900 1982610 1983656 - acid phosphatase COG1409 Predicted phosphohydrolases gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08900 amad1_08905 amad1_08905 amad1_08905 1983655 1983774 + hypothetical protein gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08905 amad1_08910 amad1_08910 amad1_08910 1983798 1986503 - putative tonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08910 amad1_08915 amad1_08915 amad1_08915 1986945 1987856 + GGDEF domain protein COG2199 FOG: GGDEF domain gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08915 amad1_08920 amad1_08920 amad1_08920 1987905 1989179 + AraC family transcriptional regulator COG2207 AraC-type DNA-binding domain-containing proteins gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08920 amad1_08925 amad1_08925 amad1_08925 1989454 1990800 + NA+/H+ antiporter NHAC COG1757 Na+/H+ antiporter gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08925 amad1_08930 amad1_08930 amad1_08930 1990901 1994929 + helicase%2C ATP-dependent COG1643 HrpA-like helicases gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08930 amad1_08935 amad1_08935 amad1_08935 1995151 1995453 + type IV pilus assembly PilZ gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08935 amad1_08940 amad1_08940 amad1_08940 1995724 1995975 + hypothetical protein COG3205 Predicted membrane protein gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08940 amad1_08945 amad1_08945 amad1_08945 1996075 1997268 - putative methyltransferase COG1092 Predicted SAM-dependent methyltransferases gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08945 amad1_08950 amad1_08950 amad1_08950 1997420 1998397 + oxidoreductase%2C zinc-binding dehydrogenase family protein COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08950 amad1_08955 amad1_08955 rnhA rnhA 1998473 1998943 - ribonuclease H COG0328 Ribonuclease HI gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08955 amad1_08960 amad1_08960 amad1_08960 1999041 1999760 + DNA polymerase III subunit epsilon COG0847 DNA polymerase III%2C epsilon subunit and related 3'-5' exonucleases gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08960 amad1_08965 amad1_08965 amad1_08965 1999829 2001331 + hypothetical protein gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08965 amad1_08970 amad1_08970 amad1_08970 2002230 2003780 + hypothetical protein COG4943 Predicted signal transduction protein containing sensor and EAL domains gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08970 amad1_08975 amad1_08975 lolD lolD 2003871 2004581 + lipoprotein transporter ATP-binding subunit COG1136 ABC-type antimicrobial peptide transport system%2C ATPase component gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08975 amad1_08980 amad1_08980 amad1_08980 2004568 2005794 + ABC transporter permease COG4591 ABC-type transport system%2C involved in lipoprotein release%2C permease component gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08980 amad1_08985 amad1_08985 amad1_08985 2005972 2007318 - putative proton/glutamate symporter COG1301 Na+/H+-dicarboxylate symporters gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08985 amad1_08990 amad1_08990 amad1_08990 2007433 2009970 + invasin domain-containing protein gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08990 amad1_08995 amad1_08995 amad1_08995 2010026 2011366 - succinylarginine dihydrolase COG3724 Succinylarginine dihydrolase gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_08995 amad1_09000 amad1_09000 amad1_09000 2011438 2011620 + hypothetical protein gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09000 amad1_09015 amad1_09015 amad1_09015 2014560 2015111 + nucleoprotein/polynucleotide-associated enzyme COG3122 Uncharacterized protein conserved in bacteria gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09015 amad1_09020 amad1_09020 amad1_09020 2015477 2016286 + putative zinc metalloendopeptidase gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09020 amad1_09025 amad1_09025 amad1_09025 2016378 2017013 + molybdopterin guanine dinucleotide synthase COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09025 amad1_09030 amad1_09030 amad1_09030 2017003 2017809 + formate dehydrogenase chain D COG1526 Uncharacterized protein required for formate dehydrogenase activity gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09030 amad1_09035 amad1_09035 amad1_09035 2017742 2020081 - putative formate dehydrogenase oxidoreductase protein COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09035 amad1_09040 amad1_09040 amad1_09040 2020466 2020921 + elaA protein COG2153 Predicted acyltransferase gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09040 amad1_09045 amad1_09045 amad1_09045 2020973 2021344 - cryptic haloacid dehalogenase 1 COG1011 Predicted hydrolase (HAD superfamily) gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09045 amad1_09050 amad1_09050 amad1_09050 2021544 2022638 - hypothetical protein gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09050 amad1_09055 amad1_09055 amad1_09055 2022771 2026175 - RNase E COG1530 Ribonucleases G and E gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09055 amad1_09060 amad1_09060 amad1_09060 2026969 2027910 + ribosomal large subunit pseudouridine synthase C COG0564 Pseudouridylate synthases%2C 23S RNA-specific gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09060 amad1_09065 amad1_09065 amad1_09065 2027918 2028622 + putative phosphoglycolate phosphatase COG0546 Predicted phosphatases gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09065 amad1_09070 amad1_09070 amad1_09070 2028641 2029261 - maf protein COG0424 Nucleotide-binding protein implicated in inhibition of septum formation gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09070 amad1_09075 amad1_09075 amad1_09075 2029353 2029949 + hypothetical protein COG1399 Predicted metal-binding%2C possibly nucleic acid-binding protein gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09075 amad1_09080 amad1_09080 rpmF rpmF 2029953 2030123 + 50S ribosomal protein L32 COG0333 Ribosomal protein L32 gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09080 amad1_09085 amad1_09085 amad1_09085 2030139 2031164 + fatty acid/phospholipid synthesis protein COG0416 Fatty acid/phospholipid biosynthesis enzyme gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09085 amad1_09090 amad1_09090 amad1_09090 2031161 2032126 + 3-oxoacyl-ACP synthase III COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09090 amad1_09095 amad1_09095 amad1_09095 2032198 2033127 + malonyl CoA-acyl carrier protein transacylase COG0331 (acyl-carrier-protein) S-malonyltransferase gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09095 amad1_09100 amad1_09100 amad1_09100 2033137 2033877 + 3-oxoacyl-ACP reductase COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09100 amad1_09105 amad1_09105 acpP acpP 2034077 2034316 + acyl carrier protein COG0236 Acyl carrier protein gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09105 amad1_09110 amad1_09110 amad1_09110 2034397 2035635 + 3-oxoacyl-ACP synthase II COG0304 3-oxoacyl-(acyl-carrier-protein) synthase gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09110 amad1_09115 amad1_09115 amad1_09115 2035791 2036639 + 4-amino-4-deoxychorismate lyase COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09115 amad1_09120 amad1_09120 amad1_09120 2036732 2037751 + hypothetical protein COG1559 Predicted periplasmic solute-binding protein gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09120 amad1_09125 amad1_09125 tmk tmk 2037818 2038486 + thymidylate kinase COG0125 Thymidylate kinase gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09125 amad1_09130 amad1_09130 amad1_09130 2038486 2039373 + DNA polymerase III subunit delta COG0470 ATPase involved in DNA replication gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09130 amad1_09135 amad1_09135 amad1_09135 2039434 2040225 + putative metallo-dependent hydrolase COG0084 Mg-dependent DNase gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09135 amad1_09140 amad1_09140 amad1_09140 2040246 2040803 + pyridoxamine 5'-phosphate oxidase-like FMN-binding protein COG5135 Uncharacterized conserved protein gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09140 amad1_09145 amad1_09145 amad1_09145 2041003 2041635 - hypothetical protein COG0702 Predicted nucleoside-diphosphate-sugar epimerases gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09145 amad1_09150 amad1_09150 amad1_09150 2041853 2044843 - GGDEF domain protein COG3292 Predicted periplasmic ligand-binding sensor domain gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09150 amad1_09155 amad1_09155 amad1_09155 2044967 2046787 - zinc-dependent metallopeptidase gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09155 amad1_09160 amad1_09160 amad1_09160 2046921 2047286 + hypothetical protein COG3296 Uncharacterized protein conserved in bacteria gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09160 amad1_09165 amad1_09165 amad1_09165 2047381 2047656 - hypothetical protein gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09165 amad1_09170 amad1_09170 amad1_09170 2047834 2048598 - Short-chain dehydrogenase/reductase SDR COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09170 amad1_09175 amad1_09175 amad1_09175 2048611 2049531 - haloalkane dehalogenase COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09175 amad1_09180 amad1_09180 amad1_09180 2049777 2051903 + 3-hydroxyacyl-CoA dehydrogenase COG1024 Enoyl-CoA hydratase/carnithine racemase gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09180 amad1_09185 amad1_09185 amad1_09185 2052035 2053216 + acetyl-CoA acetyltransferase COG0183 Acetyl-CoA acetyltransferase gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09185 amad1_09190 amad1_09190 amad1_09190 2053226 2055025 + Acyl-CoA dehydrogenase COG1960 Acyl-CoA dehydrogenases gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09190 amad1_09195 amad1_09195 amad1_09195 2055393 2055791 - hypothetical protein gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09195 amad1_09200 amad1_09200 amad1_09200 2056035 2056433 - hypothetical protein gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09200 amad1_09205 amad1_09205 amad1_09205 2056748 2057704 - putative transcriptional regulator COG2390 Transcriptional regulator%2C contains sigma factor-related N-terminal domain gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09205 amad1_09210 amad1_09210 amad1_09210 2057697 2058371 - hypothetical protein COG0637 Predicted phosphatase/phosphohexomutase gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09210 amad1_09215 amad1_09215 amad1_09215 2058847 2060562 + transmembrane prediction COG1457 Purine-cytosine permease and related proteins gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09215 amad1_09220 amad1_09220 amad1_09220 2060573 2062090 + D-mannonate oxidoreductase COG0246 Mannitol-1-phosphate/altronate dehydrogenases gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09220 amad1_09225 amad1_09225 amad1_09225 2062246 2062638 - hypothetical protein gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09225 amad1_09230 amad1_09230 amad1_09230 2062843 2063745 - LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09230 amad1_09235 amad1_09235 amad1_09235 2063966 2064427 + Acyl dehydratase COG2030 Acyl dehydratase gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09235 amad1_09240 amad1_09240 amad1_09240 2064586 2064750 - hypothetical protein gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09240 amad1_09245 amad1_09245 amad1_09245 2064769 2065755 - small-conductance mechanosensitive channel COG0668 Small-conductance mechanosensitive channel gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09245 amad1_09250 amad1_09250 amad1_09250 2066175 2068880 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09250 amad1_09255 amad1_09255 amad1_09255 2069071 2069373 + putative pterin-4-alpha-carbinolamine dehydratase protein COG2154 Pterin-4a-carbinolamine dehydratase gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09255 amad1_09260 amad1_09260 amad1_09260 2069951 2073286 + putative two-component member protein COG3300 MHYT domain (predicted integral membrane sensor domain) gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09260 amad1_09265 amad1_09265 amad1_09265 2073301 2074302 + response regulator CheB (receptor modification enzyme%2C protein-glutamate methylesterase) COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09265 amad1_09270 amad1_09270 amad1_09270 2074611 2075069 + hypothetical protein COG0779 Uncharacterized protein conserved in bacteria gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09270 amad1_09275 amad1_09275 amad1_09275 2075115 2076611 + transcription elongation factor NusA COG0195 Transcription elongation factor gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09275 amad1_09280 amad1_09280 infB infB 2076636 2079242 + translation initiation factor IF-2 COG0532 Translation initiation factor 2 (IF-2%3B GTPase) gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09280 amad1_09285 amad1_09285 amad1_09285 2079360 2079761 + ribosome-binding factor A COG0858 Ribosome-binding factor A gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09285 amad1_09290 amad1_09290 amad1_09290 2079762 2080733 + tRNA pseudouridine synthase B COG0130 Pseudouridine synthase gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09290 amad1_09295 amad1_09295 amad1_09295 2080928 2082214 + hypothetical protein gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09295 amad1_09300 amad1_09300 rpsO rpsO 2082326 2082595 + 30S ribosomal protein S15 COG0184 Ribosomal protein S15P/S13E gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09300 amad1_09305 amad1_09305 amad1_09305 2082784 2083530 - RNA pseudouridine synthase family protein COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09305 amad1_09320 amad1_09320 amad1_09320 2084711 2086267 - amidohydrolase COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09320 amad1_09325 amad1_09325 amad1_09325 2086401 2086508 - hypothetical protein gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09325 amad1_09330 amad1_09330 amad1_09330 2086550 2087221 + oxidoreductase%2C 2OG-Fe(II) oxygenase family protein COG3751 Predicted proline hydroxylase gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09330 amad1_09335 amad1_09335 amad1_09335 2087318 2087452 - hypothetical protein gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09335 amad1_09340 amad1_09340 amad1_09340 2087507 2089192 + response regulator receiver protein COG0784 FOG: CheY-like receiver gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09340 amad1_09345 amad1_09345 amad1_09345 2089321 2091912 - extracellular nuclease COG2374 Predicted extracellular nuclease gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09345 amad1_09350 amad1_09350 amad1_09350 2092233 2093561 - hypothetical protein COG4320 Uncharacterized protein conserved in bacteria gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09350 amad1_09355 amad1_09355 amad1_09355 2093578 2093769 - hypothetical protein gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09355 amad1_09360 amad1_09360 amad1_09360 2093867 2094430 + peroxiredoxin COG0450 Peroxiredoxin gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09360 amad1_09365 amad1_09365 amad1_09365 2094607 2096196 + alkyl hydroperoxide reductase subunit F COG3634 Alkyl hydroperoxide reductase%2C large subunit gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09365 amad1_09370 amad1_09370 amad1_09370 2096525 2097061 + hypothetical protein gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09370 amad1_09375 amad1_09375 amad1_09375 2097071 2098564 + Aspartate kinase COG3182 Uncharacterized iron-regulated membrane protein gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09375 amad1_09380 amad1_09380 amad1_09380 2098619 2098810 - hypothetical protein gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09380 amad1_09385 amad1_09385 amad1_09385 2098888 2099466 - Coq7 family protein COG2941 Ubiquinone biosynthesis protein COQ7 gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09385 amad1_09390 amad1_09390 amad1_09390 2099699 2100772 + hypothetical protein COG3386 Gluconolactonase gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09390 amad1_09395 amad1_09395 amad1_09395 2101078 2102745 + peptidase S41 COG0793 Periplasmic protease gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09395 amad1_09400 amad1_09400 amad1_09400 2102745 2103149 + putative signal peptide protein COG0312 Predicted Zn-dependent proteases and their inactivated homologs gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09400 amad1_09405 amad1_09405 amad1_09405 2103223 2105598 - hypothetical protein COG1032 Fe-S oxidoreductase gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09405 amad1_09410 amad1_09410 amad1_09410 2105916 2106380 + hypothetical protein COG2947 Uncharacterized conserved protein gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09410 amad1_09415 amad1_09415 amad1_09415 2106466 2106876 - hypothetical protein gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09415 amad1_09420 amad1_09420 amad1_09420 2107043 2109382 + putative TonB dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09420 amad1_09425 amad1_09425 amad1_09425 2109491 2111551 + mercuric reductase (Hg(II) reductase) COG0398 Uncharacterized conserved protein gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09425 amad1_09430 amad1_09430 amad1_09430 2111581 2112462 + hypothetical protein gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09430 amad1_09435 amad1_09435 amad1_09435 2112578 2113771 + hypothetical protein COG4134 ABC-type uncharacterized transport system%2C periplasmic component gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09435 amad1_09440 amad1_09440 amad1_09440 2113771 2115516 + putative ABC transporter permease COG4135 ABC-type uncharacterized transport system%2C permease component gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09440 amad1_09445 amad1_09445 amad1_09445 2115506 2116144 + putative ABC transporter ATP-binding protein COG4136 ABC-type uncharacterized transport system%2C ATPase component gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09445 amad1_09450 amad1_09450 amad1_09450 2116138 2116794 + putative CDP-alcohol phosphatidyltransferase COG0558 Phosphatidylglycerophosphate synthase gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09450 amad1_09455 amad1_09455 amad1_09455 2116934 2117785 + putative C-5 sterol desaturase COG3000 Sterol desaturase gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09455 amad1_09460 amad1_09460 amad1_09460 2117853 2118020 - endonuclease gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09460 amad1_09465 amad1_09465 amad1_09465 2118147 2118722 - exopolysaccharide synthesis%2C exoD COG3932 Uncharacterized ABC-type transport system%2C permease components gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09465 amad1_09470 amad1_09470 amad1_09470 2118877 2119191 + hypothetical protein gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09470 amad1_09475 amad1_09475 amad1_09475 2119208 2119579 + response regulator COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09475 amad1_09480 amad1_09480 amad1_09480 2119820 2120578 + hypothetical protein gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09480 amad1_09485 amad1_09485 amad1_09485 2120643 2121485 + hypothetical protein gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09485 amad1_09490 amad1_09490 amad1_09490 2121565 2121921 - hypothetical protein gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09490 amad1_09495 amad1_09495 amad1_09495 2122137 2122703 + resolvase domain-containing protein COG1961 Site-specific recombinases%2C DNA invertase Pin homologs gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09495 amad1_09500 amad1_09500 amad1_09500 2122902 2123627 + Pathogenesis-related transcriptional factor and ERF protein gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09500 amad1_09505 amad1_09505 amad1_09505 2123632 2124189 - putative transposase COG2801 Transposase and inactivated derivatives gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09505 amad1_09510 amad1_09510 amad1_09510 2124314 2125723 + transposase-like protein COG3436 Transposase and inactivated derivatives gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09510 amad1_09515 amad1_09515 amad1_09515 2125704 2126048 - putative transposase COG2801 Transposase and inactivated derivatives gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09515 amad1_09520 amad1_09520 amad1_09520 2127571 2128794 + oxidoreductase%2C FMN-binding protein COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme family gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09520 amad1_09525 amad1_09525 smpB smpB 2128897 2129376 - SsrA-binding protein COG0691 tmRNA-binding protein gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09525 amad1_09530 amad1_09530 amad1_09530 2129522 2129953 + cyclase/dehydrase COG2867 Oligoketide cyclase/lipid transport protein gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09530 amad1_09535 amad1_09535 amad1_09535 2129950 2130297 + hypothetical protein COG2914 Uncharacterized protein conserved in bacteria gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09535 amad1_09540 amad1_09540 amad1_09540 2130370 2130846 - MarR family transcriptional regulator COG1846 Transcriptional regulators gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09540 amad1_09545 amad1_09545 amad1_09545 2130879 2132849 - choline-glycine betaine transporter COG1292 Choline-glycine betaine transporter gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09545 amad1_09550 amad1_09550 amad1_09550 2133173 2135884 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09550 amad1_09555 amad1_09555 amad1_09555 2135967 2136074 + hypothetical protein gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09555 amad1_09560 amad1_09560 amad1_09560 2136049 2138028 + TPR domain-containing protein COG0457 FOG: TPR repeat gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09560 amad1_09565 amad1_09565 amad1_09565 2138330 2139043 + hypothetical protein gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09565 amad1_09570 amad1_09570 amad1_09570 2139219 2140031 - PEP synthetase regulatory protein COG1806 Uncharacterized protein conserved in bacteria gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09570 amad1_09575 amad1_09575 amad1_09575 2140304 2142676 + phosphoenolpyruvate synthase COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09575 amad1_09580 amad1_09580 amad1_09580 2143367 2143588 + hypothetical protein gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09580 amad1_09585 amad1_09585 amad1_09585 2143760 2146021 - twin-arginine translocation pathway signal protein COG1529 Aerobic-type carbon monoxide dehydrogenase%2C large subunit CoxL/CutL homologs gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09585 amad1_09590 amad1_09590 amad1_09590 2146018 2146524 - Ferredoxin/oxidoreductase COG2080 Aerobic-type carbon monoxide dehydrogenase%2C small subunit CoxS/CutS homologs gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09590 amad1_09595 amad1_09595 amad1_09595 2146521 2146772 - hypothetical protein gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09595 amad1_09600 amad1_09600 amad1_09600 2146889 2147104 - integral membrane protein TerC gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09600 amad1_09605 amad1_09605 amad1_09605 2147423 2147839 + hypothetical protein gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09605 amad1_09610 amad1_09610 amad1_09610 2147856 2148314 - hypothetical protein COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09610 amad1_09615 amad1_09615 amad1_09615 2148324 2149490 - hypothetical protein COG2850 Uncharacterized conserved protein gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09615 amad1_09620 amad1_09620 amad1_09620 2149663 2150358 - adenylate/guanylate cyclase COG2114 Adenylate cyclase%2C family 3 (some proteins contain HAMP domain) gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09620 amad1_09625 amad1_09625 amad1_09625 2150458 2151825 - adenylosuccinate lyase COG0015 Adenylosuccinate lyase gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09625 amad1_09630 amad1_09630 amad1_09630 2151839 2152465 - lysogenization regulator COG2915 Uncharacterized protein involved in purine metabolism gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09630 amad1_09635 amad1_09635 mnmA mnmA 2152465 2153592 - tRNA-specific 2-thiouridylase MnmA COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase%2C contains the PP-loop ATPase domain gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09635 amad1_09640 amad1_09640 amad1_09640 2153927 2154469 - ribosomal large subunit pseudouridine synthase E COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09640 amad1_09645 amad1_09645 amad1_09645 2154968 2157187 + isocitrate dehydrogenase COG2838 Monomeric isocitrate dehydrogenase gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09645 amad1_09650 amad1_09650 amad1_09650 2157724 2157942 - stress response protein CspD COG1278 Cold shock proteins gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09650 amad1_09655 amad1_09655 amad1_09655 2158184 2158504 + ATP-dependent Clp protease adaptor protein ClpS COG2127 Uncharacterized conserved protein gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09655 amad1_09660 amad1_09660 amad1_09660 2158529 2160805 + ATP-dependent Clp protease ATP-binding protein ClpA COG0542 ATPases with chaperone activity%2C ATP-binding subunit gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09660 amad1_09665 amad1_09665 infA infA 2160986 2161204 - translation initiation factor IF-1 COG0361 Translation initiation factor 1 (IF-1) gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09665 amad1_09670 amad1_09670 amad1_09670 2161280 2162002 - arginyl-tRNA-protein transferase COG2935 Putative arginyl-tRNA:protein arginylyltransferase gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09670 amad1_09675 amad1_09675 aat aat 2161999 2162745 - leucyl/phenylalanyl-tRNA--protein transferase COG2360 Leu/Phe-tRNA-protein transferase gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09675 amad1_09680 amad1_09680 amad1_09680 2162791 2163756 - thioredoxin reductase protein COG0492 Thioredoxin reductase gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09680 amad1_09685 amad1_09685 amad1_09685 2164335 2164784 + hypothetical protein COG3092 Uncharacterized protein conserved in bacteria gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09685 amad1_09690 amad1_09690 amad1_09690 2164844 2165299 - hypothetical protein COG3091 Uncharacterized protein conserved in bacteria gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09690 amad1_09695 amad1_09695 amad1_09695 2165376 2167241 - signal peptide peptidase SppA%2C 67K type COG0616 Periplasmic serine proteases (ClpP class) gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09695 amad1_09700 amad1_09700 amad1_09700 2167444 2167629 - hypothetical protein gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09700 amad1_09705 amad1_09705 amad1_09705 2167672 2168286 + DoxX protein COG2259 Predicted membrane protein gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09705 amad1_09710 amad1_09710 amad1_09710 2168466 2169017 + putative nitroreductase COG0778 Nitroreductase gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09710 amad1_09715 amad1_09715 amad1_09715 2169109 2169948 - hypothetical protein gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09715 amad1_09720 amad1_09720 ansA ansA 2170019 2171026 - cytoplasmic asparaginase I COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09720 amad1_09725 amad1_09725 amad1_09725 2171324 2172286 - lipoyl synthase COG0320 Lipoate synthase gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09725 amad1_09730 amad1_09730 amad1_09730 2172279 2172950 - Lipoate-protein ligase B COG0321 Lipoate-protein ligase B gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09730 amad1_09735 amad1_09735 amad1_09735 2172951 2173214 - hypothetical protein COG2921 Uncharacterized conserved protein gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09735 amad1_09740 amad1_09740 amad1_09740 2173334 2174518 - D-alanyl-D-alanine carboxypeptidase COG1686 D-alanyl-D-alanine carboxypeptidase gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09740 amad1_09745 amad1_09745 amad1_09745 2174979 2175947 - rare lipoprotein A COG0797 Lipoproteins gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09745 amad1_09750 amad1_09750 amad1_09750 2175953 2177068 - rod shape-determining protein RodA COG0772 Bacterial cell division membrane protein gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09750 amad1_09755 amad1_09755 amad1_09755 2177068 2178981 - cell elongation-specific transpeptidase COG0768 Cell division protein FtsI/penicillin-binding protein 2 gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09755 amad1_09760 amad1_09760 amad1_09760 2179012 2179482 - rRNA large subunit methyltransferase COG1576 Uncharacterized conserved protein gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09760 amad1_09765 amad1_09765 amad1_09765 2179598 2179915 - iojap domain-containing protein COG0799 Uncharacterized homolog of plant Iojap protein gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09765 amad1_09770 amad1_09770 amad1_09770 2179933 2180625 - Nicotinic acid mononucleotide adenylyltransferase COG1057 Nicotinic acid mononucleotide adenylyltransferase gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09770 amad1_09775 amad1_09775 amad1_09775 2180639 2181664 - putative DNA polymerase III subunit delta COG1466 DNA polymerase III%2C delta subunit gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09775 amad1_09780 amad1_09780 amad1_09780 2181675 2182190 - rare lipoprotein B COG2980 Rare lipoprotein B gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09780 amad1_09785 amad1_09785 leuS leuS 2182204 2184807 - leucyl-tRNA ligase COG0495 Leucyl-tRNA synthetase gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09785 amad1_09790 amad1_09790 amad1_09790 2185087 2185668 - hypothetical protein gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09790 amad1_09795 amad1_09795 amad1_09795 2185714 2185935 - hypothetical protein gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09795 amad1_09800 amad1_09800 amad1_09800 2185934 2188330 + putative ATP-dependent protease COG1067 Predicted ATP-dependent protease gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09800 amad1_09805 amad1_09805 amad1_09805 2188558 2189295 + alpha/beta hydrolase fold protein COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09805 amad1_09810 amad1_09810 amad1_09810 2189292 2190206 + diguanylate cyclase COG2199 FOG: GGDEF domain gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09810 amad1_09815 amad1_09815 amad1_09815 2190317 2191093 - NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09815 amad1_09820 amad1_09820 amad1_09820 2191195 2191488 - RNA binding protein COG1534 Predicted RNA-binding protein containing KH domain%2C possibly ribosomal protein gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09820 amad1_09825 amad1_09825 rrmJ rrmJ 2191584 2192213 + 23S rRNA methyltransferase J COG0293 23S rRNA methylase gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09825 amad1_09830 amad1_09830 amad1_09830 2192315 2194261 + ATP-dependent metalloprotease FtsH COG0465 ATP-dependent Zn proteases gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09830 amad1_09835 amad1_09835 amad1_09835 2194446 2195270 + dihydropteroate synthase COG0294 Dihydropteroate synthase and related enzymes gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09835 amad1_09840 amad1_09840 glmM glmM 2195280 2196623 + phosphoglucosamine mutase COG1109 Phosphomannomutase gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09840 amad1_09845 amad1_09845 amad1_09845 2196720 2197463 + triosephosphate isomerase COG0149 Triosephosphate isomerase gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09845 amad1_09850 amad1_09850 amad1_09850 2197474 2197920 + protein-export membrane protein secG COG1314 Preprotein translocase subunit SecG gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09850 amad1_09855 amad1_09855 amad1_09855 2198281 2200575 + putative signal transduction protein COG2199 FOG: GGDEF domain gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09855 amad1_09860 amad1_09860 amad1_09860 2200770 2200928 + hypothetical protein COG0401 Uncharacterized homolog of Blt101 gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09860 amad1_09865 amad1_09865 amad1_09865 2201084 2201539 - hypothetical protein gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09865 amad1_09870 amad1_09870 amad1_09870 2201750 2203093 - glutamate dehydrogenase COG0334 Glutamate dehydrogenase/leucine dehydrogenase gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09870 amad1_09875 amad1_09875 amad1_09875 2203101 2204729 - hypothetical protein COG0671 Membrane-associated phospholipid phosphatase gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09875 amad1_09880 amad1_09880 amad1_09880 2204881 2205411 + hypothetical protein gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09880 amad1_09885 amad1_09885 amad1_09885 2205432 2206136 + 3-oxoacyl-(acyl-carrier-protein) reductase COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09885 amad1_09890 amad1_09890 amad1_09890 2206249 2207079 - haloacid dehalogenase-like hydrolase COG0561 Predicted hydrolases of the HAD superfamily gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09890 amad1_09895 amad1_09895 amad1_09895 2207303 2207770 - hypothetical protein gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09895 amad1_09900 amad1_09900 amad1_09900 2207819 2208112 + transposase%2C IS911 COG2963 Transposase and inactivated derivatives gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09900 amad1_09905 amad1_09905 amad1_09905 2208160 2208987 + Integrase COG2801 Transposase and inactivated derivatives gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09905 amad1_09910 amad1_09910 amad1_09910 2209685 2210707 + DNA topoisomerase COG3569 Topoisomerase IB gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09910 amad1_09915 amad1_09915 amad1_09915 2211155 2212663 + proline/sodium symporter COG0591 Na+/proline symporter gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09915 amad1_09920 amad1_09920 amad1_09920 2212680 2213789 + gamma-glutamyl kinase COG0263 Glutamate 5-kinase gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09920 amad1_09925 amad1_09925 amad1_09925 2213786 2215033 + gamma-glutamyl phosphate reductase COG0014 Gamma-glutamyl phosphate reductase gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09925 amad1_09930 amad1_09930 amad1_09930 2215164 2216114 + mechanosensitive ion channel MscS COG0668 Small-conductance mechanosensitive channel gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09930 amad1_09935 amad1_09935 amad1_09935 2216161 2216715 - restriction endonuclease COG1403 Restriction endonuclease gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09935 amad1_09940 amad1_09940 amad1_09940 2217110 2219221 + polynucleotide phosphorylase/polyadenylase COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09940 amad1_09945 amad1_09945 amad1_09945 2219397 2219690 + Deoxycytidine triphosphate deaminase COG3492 Uncharacterized protein conserved in bacteria gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09945 amad1_09950 amad1_09950 amad1_09950 2219707 2219856 + hypothetical protein gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09950 amad1_09955 amad1_09955 amad1_09955 2220375 2220587 + hypothetical protein gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09955 amad1_09960 amad1_09960 amad1_09960 2220701 2221465 + hypothetical protein COG1403 Restriction endonuclease gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09960 amad1_09965 amad1_09965 amad1_09965 2221577 2222272 + hypothetical protein gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09965 amad1_09970 amad1_09970 amad1_09970 2222766 2224019 + sterol 3-beta-glucosyltransferase COG1819 Glycosyl transferases%2C related to UDP-glucuronosyltransferase gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09970 amad1_09975 amad1_09975 amad1_09975 2224048 2224443 - hypothetical protein gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09975 amad1_09980 amad1_09980 amad1_09980 2224415 2225980 - transposase COG3436 Transposase and inactivated derivatives gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09980 amad1_09985 amad1_09985 amad1_09985 2226004 2226339 - transposase-like protein COG3436 Transposase and inactivated derivatives gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09985 amad1_09990 amad1_09990 amad1_09990 2226339 2226623 - hypothetical protein COG2801 Transposase and inactivated derivatives gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09990 amad1_09995 amad1_09995 amad1_09995 2226809 2227480 + hypothetical protein gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_09995 amad1_10000 amad1_10000 amad1_10000 2227588 2227818 + hypothetical protein gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10000 amad1_10005 amad1_10005 amad1_10005 2228069 2228443 - ISGsu4%2C transposase COG3547 Transposase and inactivated derivatives gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10005 amad1_10010 amad1_10010 amad1_10010 2228916 2230070 - ISCps8%2C transposase COG3547 Transposase and inactivated derivatives gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10010 amad1_10015 amad1_10015 amad1_10015 2230640 2231617 - hypothetical protein COG1943 Transposase and inactivated derivatives gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10015 amad1_10020 amad1_10020 amad1_10020 2231826 2232023 + Deoxycytidine triphosphate deaminase COG3492 Uncharacterized protein conserved in bacteria gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10020 amad1_10025 amad1_10025 amad1_10025 2232561 2232743 - hypothetical protein gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10025 amad1_10030 amad1_10030 amad1_10030 2232825 2234333 + hypothetical protein COG4938 Uncharacterized conserved protein gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10030 amad1_10035 amad1_10035 amad1_10035 2234762 2235460 + hypothetical protein gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10035 amad1_10040 amad1_10040 amad1_10040 2235480 2236238 + hypothetical protein gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10040 amad1_10045 amad1_10045 amad1_10045 2236669 2237298 + hypothetical protein gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10045 amad1_10050 amad1_10050 amad1_10050 2237430 2238218 + PhzF family phenazine biosynthesis protein COG0384 Predicted epimerase%2C PhzC/PhzF homolog gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10050 amad1_10055 amad1_10055 amad1_10055 2238765 2239058 + transposase%2C IS911 COG2963 Transposase and inactivated derivatives gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10055 amad1_10060 amad1_10060 amad1_10060 2239106 2239933 + Integrase COG2801 Transposase and inactivated derivatives gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10060 amad1_10065 amad1_10065 amad1_10065 2240110 2240646 + hypothetical protein COG3809 Uncharacterized protein conserved in bacteria gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10065 amad1_10070 amad1_10070 amad1_10070 2240710 2241159 + acyltransferase domain-containing protein COG5056 Acyl-CoA cholesterol acyltransferase gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10070 amad1_10075 amad1_10075 amad1_10075 2241192 2241782 + hypothetical protein COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10075 amad1_10080 amad1_10080 amad1_10080 2241890 2242360 + hypothetical protein gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10080 amad1_10085 amad1_10085 amad1_10085 2242482 2242886 + hypothetical protein gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10085 amad1_10090 amad1_10090 amad1_10090 2242944 2243135 + hypothetical protein gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10090 amad1_10095 amad1_10095 amad1_10095 2243192 2243686 + hypothetical protein COG0563 Adenylate kinase and related kinases gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10095 amad1_10100 amad1_10100 amad1_10100 2243917 2244234 + hypothetical protein gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10100 amad1_10105 amad1_10105 amad1_10105 2244268 2244666 + hypothetical protein COG5331 Uncharacterized protein conserved in bacteria gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10105 amad1_10110 amad1_10110 amad1_10110 2244687 2244911 + hypothetical protein gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10110 amad1_10115 amad1_10115 amad1_10115 2244932 2245189 + hypothetical protein gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10115 amad1_10120 amad1_10120 amad1_10120 2245267 2246316 + hypothetical protein gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10120 amad1_10125 amad1_10125 amad1_10125 2246463 2247176 + hypothetical protein gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10125 amad1_10130 amad1_10130 amad1_10130 2247376 2247492 + hypothetical protein gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10130 amad1_10135 amad1_10135 amad1_10135 2247603 2248235 + TonB family protein COG0810 Periplasmic protein TonB%2C links inner and outer membranes gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10135 amad1_10140 amad1_10140 amad1_10140 2248216 2249625 - transposase-like protein COG3436 Transposase and inactivated derivatives gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10140 amad1_10145 amad1_10145 amad1_10145 2249714 2249833 + TonB family protein COG0810 Periplasmic protein TonB%2C links inner and outer membranes gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10145 amad1_10150 amad1_10150 amad1_10150 2249843 2250445 + ECF subfamily RNA polymerase sigma-24 factor COG1595 DNA-directed RNA polymerase specialized sigma subunit%2C sigma24 homolog gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10150 amad1_10155 amad1_10155 amad1_10155 2250448 2251116 + hypothetical protein gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10155 amad1_10160 amad1_10160 amad1_10160 2251217 2251624 - Cytidine deaminase COG0295 Cytidine deaminase gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10160 amad1_10165 amad1_10165 amad1_10165 2251760 2252662 + lipoprotein NlpI COG4785 Lipoprotein NlpI%2C contains TPR repeats gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10165 amad1_10170 amad1_10170 amad1_10170 2252675 2254264 + hypothetical protein COG0790 FOG: TPR repeat%2C SEL1 subfamily gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10170 amad1_10175 amad1_10175 amad1_10175 2254351 2255088 - putative sulfate transport protein CysZ COG2981 Uncharacterized protein involved in cysteine biosynthesis gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10175 amad1_10180 amad1_10180 amad1_10180 2255319 2258906 + chromosome segregation ATPase COG1196 Chromosome segregation ATPases gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10180 amad1_10185 amad1_10185 amad1_10185 2258927 2260525 + putative cell division protein ZipA COG3115 Cell division protein gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10185 amad1_10190 amad1_10190 amad1_10190 2260770 2262806 + NAD-dependent DNA ligase COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10190 amad1_10195 amad1_10195 amad1_10195 2262959 2263483 - flagellar biosynthesis protein FlhF COG3216 Uncharacterized protein conserved in bacteria gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10195 amad1_10200 amad1_10200 amad1_10200 2263574 2263723 - hypothetical protein gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10200 amad1_10205 amad1_10205 amad1_10205 2263728 2266295 + DNA internalization-related competence protein ComEC/Rec2 COG0658 Predicted membrane metal-binding protein gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10205 amad1_10210 amad1_10210 amad1_10210 2266548 2268296 + lipid A ABC exporter%2C fused ATPase and inner membrane subunits MsbA COG1132 ABC-type multidrug transport system%2C ATPase and permease components gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10210 amad1_10215 amad1_10215 amad1_10215 2268293 2269342 + tetraacyldisaccharide 4'-kinase COG1663 Tetraacyldisaccharide-1-P 4'-kinase gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10215 amad1_10220 amad1_10220 amad1_10220 2269332 2269526 + hypothetical protein COG2835 Uncharacterized conserved protein gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10220 amad1_10225 amad1_10225 amad1_10225 2269581 2270327 + 3-deoxy-manno-octulosonate cytidylyltransferase COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10225 amad1_10230 amad1_10230 amad1_10230 2270474 2271133 + Short chain dehydrogenase family protein COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10230 amad1_10235 amad1_10235 amad1_10235 2271281 2272738 - MiaB-like tRNA modifying enzyme YliG COG0621 2-methylthioadenine synthetase gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10235 amad1_10240 amad1_10240 amad1_10240 2273129 2273599 + hypothetical protein gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10240 amad1_10245 amad1_10245 amad1_10245 2273637 2274050 - hypothetical protein gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10245 amad1_10250 amad1_10250 amad1_10250 2274268 2275044 - HesA/MoeB/ThiF family protein COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10250 amad1_10255 amad1_10255 amad1_10255 2275263 2276225 + glutathione S-transferase COG0435 Predicted glutathione S-transferase gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10255 amad1_10260 amad1_10260 amad1_10260 2276262 2277125 + Pirin-like protein COG1741 Pirin-related protein gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10260 amad1_10265 amad1_10265 amad1_10265 2277455 2278915 + phosphomannomutase COG1109 Phosphomannomutase gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10265 amad1_10270 amad1_10270 amad1_10270 2279118 2279540 - hypothetical protein gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10270 amad1_10275 amad1_10275 amad1_10275 2279628 2280905 - citrate synthase COG0372 Citrate synthase gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10275 amad1_10280 amad1_10280 amad1_10280 2281610 2281984 + succinate dehydrogenase%2C cytochrome b subunit COG2009 Succinate dehydrogenase/fumarate reductase%2C cytochrome b subunit gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10280 amad1_10285 amad1_10285 amad1_10285 2281978 2282325 + putative succinate dehydrogenase%2C hydrophobic subunit%2C cytochrome b556 with sdhC COG2142 Succinate dehydrogenase%2C hydrophobic anchor subunit gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10285 amad1_10290 amad1_10290 sdhA sdhA 2282327 2284099 + succinate dehydrogenase flavoprotein subunit COG1053 Succinate dehydrogenase/fumarate reductase%2C flavoprotein subunit gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10290 amad1_10295 amad1_10295 amad1_10295 2284114 2284824 + succinate dehydrogenase catalytic subunit COG0479 Succinate dehydrogenase/fumarate reductase%2C Fe-S protein subunit gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10295 amad1_10300 amad1_10300 sucA sucA 2285001 2287820 + 2-oxoglutarate dehydrogenase E1 component COG0567 2-oxoglutarate dehydrogenase complex%2C dehydrogenase (E1) component%2C and related enzymes gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10300 amad1_10305 amad1_10305 amad1_10305 2287830 2289341 + dihydrolipoyltranssuccinate transferase%2C component of the 2-oxoglutarate dehydrogenase complex COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide acyltransferase (E2) component%2C and related enzymes gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10305 amad1_10310 amad1_10310 amad1_10310 2289494 2290660 + succinyl-CoA synthetase subunit beta COG0045 Succinyl-CoA synthetase%2C beta subunit gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10310 amad1_10315 amad1_10315 amad1_10315 2290660 2291532 + Succinyl-CoA synthetase%2C alpha subunit COG0074 Succinyl-CoA synthetase%2C alpha subunit gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10315 amad1_10320 amad1_10320 amad1_10320 2291861 2294728 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10320 amad1_10325 amad1_10325 amad1_10325 2294896 2296389 + tryptophan halogenase COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10325 amad1_10330 amad1_10330 amad1_10330 2296767 2299826 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10330 amad1_10335 amad1_10335 amad1_10335 2299823 2304241 + putative pullulanase COG1523 Type II secretory pathway%2C pullulanase PulA and related glycosidases gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10335 amad1_10340 amad1_10340 amad1_10340 2304417 2305280 + hypothetical protein COG4667 Predicted esterase of the alpha-beta hydrolase superfamily gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10340 amad1_10345 amad1_10345 amad1_10345 2305922 2306470 + putative cold-shock RNA methyltransferase COG0219 Predicted rRNA methylase (SpoU class) gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10345 amad1_10350 amad1_10350 amad1_10350 2306573 2307460 + hypothetical protein COG3176 Putative hemolysin gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10350 amad1_10355 amad1_10355 amad1_10355 2307583 2309535 + putative glycosidase COG0366 Glycosidases gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10355 amad1_10360 amad1_10360 amad1_10360 2309731 2311665 + putative alpha-amylase COG0366 Glycosidases gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10360 amad1_10365 amad1_10365 amad1_10365 2311704 2313185 + sugar transporter COG0477 Permeases of the major facilitator superfamily gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10365 amad1_10370 amad1_10370 amad1_10370 2313187 2314881 + cyclomaltodextrin glucanotransferase COG0366 Glycosidases gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10370 amad1_10375 amad1_10375 amad1_10375 2315059 2316081 - putative sugar-binding protein COG1609 Transcriptional regulators gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10375 amad1_10380 amad1_10380 amad1_10380 2316379 2318046 + glutaminyl-tRNA ligase COG0008 Glutamyl- and glutaminyl-tRNA synthetases gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10380 amad1_10385 amad1_10385 amad1_10385 2318172 2318918 - short chain dehydrogenase COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10385 amad1_10390 amad1_10390 amad1_10390 2319269 2321866 + hypothetical protein COG1073 Hydrolases of the alpha/beta superfamily gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10390 amad1_10395 amad1_10395 amad1_10395 2322119 2324644 + penicillin acylase-like protein COG2366 Protein related to penicillin acylase gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10395 amad1_10400 amad1_10400 amad1_10400 2324763 2325785 + inner membrane peptidase COG0616 Periplasmic serine proteases (ClpP class) gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10400 amad1_10405 amad1_10405 amad1_10405 2325897 2326520 + TetR family transcriptional regulator COG1309 Transcriptional regulator gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10405 amad1_10410 amad1_10410 amad1_10410 2326620 2326934 - hypothetical protein gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10410 amad1_10415 amad1_10415 amad1_10415 2327181 2327942 + NIF3 protein COG0327 Uncharacterized conserved protein gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10415 amad1_10420 amad1_10420 amad1_10420 2327958 2328701 + SAM-dependent methyltransferase COG0500 SAM-dependent methyltransferases gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10420 amad1_10425 amad1_10425 amad1_10425 2328698 2329723 - D-lactate dehydrogenase COG1052 Lactate dehydrogenase and related dehydrogenases gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10425 amad1_10430 amad1_10430 amad1_10430 2329779 2330270 - glutathione peroxidase COG0386 Glutathione peroxidase gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10430 amad1_10435 amad1_10435 amad1_10435 2330358 2331233 + putative oxidoreductase COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10435 amad1_10440 amad1_10440 amad1_10440 2331329 2332864 - CheY-like receiver protein COG0784 FOG: CheY-like receiver gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10440 amad1_10445 amad1_10445 amad1_10445 2333169 2334323 + Acyl-CoA dehydrogenase family protein COG1960 Acyl-CoA dehydrogenases gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10445 amad1_10450 amad1_10450 amad1_10450 2334408 2335538 + Enoyl-CoA hydratase/isomerase family protein COG1024 Enoyl-CoA hydratase/carnithine racemase gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10450 amad1_10455 amad1_10455 amad1_10455 2335639 2335734 - hypothetical protein gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10455 amad1_10460 amad1_10460 amad1_10460 2335733 2336605 + rRNA (guanine-N1-)-methyltransferase COG0500 SAM-dependent methyltransferases gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10460 amad1_10465 amad1_10465 amad1_10465 2336968 2337183 + Histidinol-phosphate phosphatase COG0241 Histidinol phosphatase and related phosphatases gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10465 amad1_10470 amad1_10470 amad1_10470 2337298 2338824 - Membrane-associated hydrolase of alkaline phosphatase superfamily protein COG3083 Predicted hydrolase of alkaline phosphatase superfamily gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10470 amad1_10475 amad1_10475 amad1_10475 2338833 2339051 - hypothetical protein COG3082 Uncharacterized protein conserved in bacteria gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10475 amad1_10480 amad1_10480 amad1_10480 2339211 2340317 + nucleoid-associated protein NdpA COG3081 Nucleoid-associated protein gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10480 amad1_10485 amad1_10485 amad1_10485 2340433 2341308 + hypothetical protein COG0720 6-pyruvoyl-tetrahydropterin synthase gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10485 amad1_10490 amad1_10490 amad1_10490 2341350 2342267 + metalloendopeptidase-like membrane protein COG0739 Membrane proteins related to metalloendopeptidases gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10490 amad1_10495 amad1_10495 amad1_10495 2342348 2344150 - protease COG3975 Predicted protease with the C-terminal PDZ domain gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10495 amad1_10500 amad1_10500 amad1_10500 2344342 2345025 + hypothetical protein gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10500 amad1_10505 amad1_10505 amad1_10505 2345098 2345559 + putative PRS2 protein COG4539 Predicted membrane protein gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10505 amad1_10510 amad1_10510 amad1_10510 2345709 2346782 + sensor histidine kinase COG2972 Predicted signal transduction protein with a C-terminal ATPase domain gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10510 amad1_10515 amad1_10515 amad1_10515 2346784 2347611 + putative response regulator in two-component regulatory system COG3279 Response regulator of the LytR/AlgR family gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10515 amad1_10520 amad1_10520 amad1_10520 2347686 2348780 - 6-phosphofructokinase COG0205 6-phosphofructokinase gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10520 amad1_10525 amad1_10525 amad1_10525 2348898 2349740 + hypothetical protein gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10525 amad1_10530 amad1_10530 amad1_10530 2350019 2350867 + ISCR1 transposase COG2051 Ribosomal protein S27E gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10530 amad1_10535 amad1_10535 amad1_10535 2351819 2353195 - hydrolase COG0491 Zn-dependent hydrolases%2C including glyoxylases gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10535 amad1_10540 amad1_10540 amad1_10540 2353718 2354515 - putative DNA polymerase-like protein gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10540 amad1_10545 amad1_10545 amad1_10545 2354532 2355773 - Radical SAM COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10545 amad1_10550 amad1_10550 amad1_10550 2356094 2357734 - response regulator with TPR repeat COG0784 FOG: CheY-like receiver gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10550 amad1_10555 amad1_10555 amad1_10555 2357856 2358410 + putative fumarate reductase flavoprotein subunit gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10555 amad1_10560 amad1_10560 amad1_10560 2358577 2359572 + rhodanese-related sulfurtransferase COG1054 Predicted sulfurtransferase gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10560 amad1_10565 amad1_10565 amad1_10565 2359631 2359873 + putative signal transduction protein with EFhand domain COG5126 Ca2+-binding protein (EF-Hand superfamily) gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10565 amad1_10570 amad1_10570 amad1_10570 2360115 2361440 - ATP-dependent RNA helicase COG0513 Superfamily II DNA and RNA helicases gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10570 amad1_10575 amad1_10575 amad1_10575 2361650 2362303 - 3-oxoacid CoA-transferase subunit B family enzyme COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase%2C beta subunit gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10575 amad1_10580 amad1_10580 amad1_10580 2362303 2363010 - putative succinyl-CoA transferase subunit alpha COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase%2C alpha subunit gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10580 amad1_10585 amad1_10585 amad1_10585 2363133 2364017 + transcriptional regulator COG0583 Transcriptional regulator gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10585 amad1_10590 amad1_10590 amad1_10590 2364088 2364846 - hypothetical protein gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10590 amad1_10595 amad1_10595 amad1_10595 2364942 2365646 - Signal transduction histidine kinase COG0642 Signal transduction histidine kinase gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10595 amad1_10600 amad1_10600 cysB cysB 2365856 2366830 + transcriptional regulator CysB COG0583 Transcriptional regulator gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10600 amad1_10605 amad1_10605 amad1_10605 2366915 2368288 - L-serine dehydratase 1 COG1760 L-serine deaminase gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10605 amad1_10610 amad1_10610 amad1_10610 2368521 2369093 - NTP pyrophosphohydrolase%2C NUDIX family protein COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10610 amad1_10615 amad1_10615 amad1_10615 2369142 2370602 - P-aminobenzoate synthetase%2C component I COG0147 Anthranilate/para-aminobenzoate synthases component I gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10615 amad1_10620 amad1_10620 amad1_10620 2370890 2372419 + fumarate hydratase COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I%2C N-terminal domain gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10620 amad1_10625 amad1_10625 amad1_10625 2372412 2372642 - hypothetical protein gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10625 amad1_10630 amad1_10630 amad1_10630 2372644 2373933 + RmuC COG1322 Uncharacterized protein conserved in bacteria gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10630 amad1_10635 amad1_10635 amad1_10635 2373978 2377943 - subtilase family serine protease COG1404 Subtilisin-like serine proteases gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10635 amad1_10640 amad1_10640 amad1_10640 2378491 2379678 + alpha keto acid dehydrogenase complex%2C E1 component subunit alpha COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dehydrogenase (E1) component%2C eukaryotic type%2C alpha subunit gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10640 amad1_10645 amad1_10645 amad1_10645 2379678 2380655 + 2-oxoglutarate dehydrogenase complex%2C dehydrogenase (E1) component%2C eukaryotic type subunit beta COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dehydrogenase (E1) component%2C eukaryotic type%2C beta subunit gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10645 amad1_10650 amad1_10650 amad1_10650 2380673 2382334 + dihydrolipoamide acetyltransferase COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide acyltransferase (E2) component%2C and related enzymes gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10650 amad1_10655 amad1_10655 amad1_10655 2382503 2383381 + hypothetical protein COG2961 Protein involved in catabolism of external DNA gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10655 amad1_10660 amad1_10660 amad1_10660 2383475 2385349 + serine/threonine protein kinase COG0515 Serine/threonine protein kinase gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10660 amad1_10665 amad1_10665 amad1_10665 2385342 2386202 + Acyl-CoA thioesterase II COG1946 Acyl-CoA thioesterase gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10665 amad1_10670 amad1_10670 amad1_10670 2386213 2386737 + Carbonic anhydrases/acetyltransferase%2C isoleucine patch superfamily protein COG0663 Carbonic anhydrases/acetyltransferases%2C isoleucine patch superfamily gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10670 amad1_10675 amad1_10675 amad1_10675 2387239 2388360 + putative serine-pyruvate aminotransferase COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10675 amad1_10680 amad1_10680 amad1_10680 2388680 2389396 + putative periplasmic immunogenic protein COG2968 Uncharacterized conserved protein gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10680 amad1_10685 amad1_10685 amad1_10685 2389409 2389864 + GAF domain-containing protein COG1956 GAF domain-containing protein gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10685 amad1_10690 amad1_10690 amad1_10690 2389867 2390157 + hypothetical protein gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10690 amad1_10695 amad1_10695 amad1_10695 2390174 2390842 + ProP expression regulator COG3109 Activator of osmoprotectant transporter ProP gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10695 amad1_10700 amad1_10700 amad1_10700 2390845 2392887 + carboxy-terminal protease COG0793 Periplasmic protease gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10700 amad1_10705 amad1_10705 amad1_10705 2392970 2394304 + sodium-dependent symporter family protein COG0733 Na+-dependent transporters of the SNF family gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10705 amad1_10710 amad1_10710 amad1_10710 2394376 2395851 + Na+/H+ antiporter NhaC COG1757 Na+/H+ antiporter gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10710 amad1_10715 amad1_10715 pepN pepN 2395898 2398507 + aminopeptidase N COG0308 Aminopeptidase N gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10715 amad1_10720 amad1_10720 amad1_10720 2398494 2398736 + hypothetical protein gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10720 amad1_10725 amad1_10725 amad1_10725 2399073 2401133 + hypothetical protein gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10725 amad1_10730 amad1_10730 amad1_10730 2401146 2402513 + hypothetical protein gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10730 amad1_10735 amad1_10735 amad1_10735 2402593 2403639 + BNR repeat-containing protein COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10735 amad1_10740 amad1_10740 amad1_10740 2403655 2405973 + hypothetical protein COG1033 Predicted exporters of the RND superfamily gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10740 amad1_10745 amad1_10745 amad1_10745 2406170 2411008 + NAD-specific glutamate dehydrogenase COG2902 NAD-specific glutamate dehydrogenase gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10745 amad1_10750 amad1_10750 amad1_10750 2411078 2412085 + dihydroorotate dehydrogenase 2 COG0167 Dihydroorotate dehydrogenase gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10750 amad1_10755 amad1_10755 amad1_10755 2412157 2414256 + 23S rRNA m(2)G2445 methyltransferase COG0116 Predicted N6-adenine-specific DNA methylase gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10755 amad1_10760 amad1_10760 amad1_10760 2414253 2414486 + thiol-disulfide isomerase and thioredoxin i COG0526 Thiol-disulfide isomerase and thioredoxins gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10760 amad1_10765 amad1_10765 amad1_10765 2414483 2416423 + ABC transporter ATP-binding protein COG0488 ATPase components of ABC transporters with duplicated ATPase domains gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10765 amad1_10770 amad1_10770 amad1_10770 2416436 2418193 + hypothetical protein gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10770 amad1_10775 amad1_10775 amad1_10775 2418495 2418671 + ribosome modulation factor COG3130 Ribosome modulation factor gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10775 amad1_10780 amad1_10780 amad1_10780 2418766 2419284 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10780 amad1_10785 amad1_10785 amad1_10785 2419482 2419778 + hypothetical protein gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10785 amad1_10790 amad1_10790 amad1_10790 2419775 2421406 - deoxyribodipyrimidine photolyase COG0415 Deoxyribodipyrimidine photolyase gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10790 amad1_10795 amad1_10795 amad1_10795 2421418 2422725 - deoxyribodipyrimidine photolyase COG0415 Deoxyribodipyrimidine photolyase gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10795 amad1_10800 amad1_10800 amad1_10800 2422837 2424261 + deoxyribodipyrimidine photo-lyase COG0415 Deoxyribodipyrimidine photolyase gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10800 amad1_10805 amad1_10805 amad1_10805 2424265 2425803 + deoxyribodipyrimidine photolyase-like protein COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10805 amad1_10810 amad1_10810 amad1_10810 2425790 2425927 + zinc finger protein COG4338 Uncharacterized protein conserved in bacteria gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10810 amad1_10815 amad1_10815 amad1_10815 2425982 2427289 + membrane protein COG4325 Predicted membrane protein gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10815 amad1_10820 amad1_10820 amad1_10820 2429161 2430351 + Site-specific recombinase XerD-like protein COG4974 Site-specific recombinase XerD gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10820 amad1_10825 amad1_10825 amad1_10825 2430571 2430921 + hypothetical protein gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10825 amad1_10830 amad1_10830 amad1_10830 2430945 2431298 - Diacylglycerol kinase COG0818 Diacylglycerol kinase gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10830 amad1_10835 amad1_10835 amad1_10835 2431367 2431789 - hypothetical protein COG0589 Universal stress protein UspA and related nucleotide-binding proteins gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10835 amad1_10840 amad1_10840 amad1_10840 2431991 2432464 + cytochrome c family protein gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10840 amad1_10845 amad1_10845 amad1_10845 2432557 2434188 - glutamate synthase COG0069 Glutamate synthase domain 2 gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10845 amad1_10850 amad1_10850 amad1_10850 2434588 2436159 + putative glutathione-regulated potassium-efflux system protein COG4651 Kef-type K+ transport system%2C predicted NAD-binding component gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10850 amad1_10855 amad1_10855 amad1_10855 2436293 2436769 + putative glutathione-regulated potassium-efflux system protein COG2193 Bacterioferritin (cytochrome b1) gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10855 amad1_10860 amad1_10860 amad1_10860 2436769 2437236 + bacterioferritin COG2193 Bacterioferritin (cytochrome b1) gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10860 amad1_10865 amad1_10865 amad1_10865 2437306 2437785 - hypothetical protein gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10865 amad1_10870 amad1_10870 amad1_10870 2438015 2439448 + cbb3-type cytochrome c oxidase subunit I COG3278 Cbb3-type cytochrome oxidase%2C subunit 1 gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10870 amad1_10875 amad1_10875 amad1_10875 2439464 2440069 + cbb3-type cytochrome c oxidase subunit II COG2993 Cbb3-type cytochrome oxidase%2C cytochrome c subunit gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10875 amad1_10880 amad1_10880 amad1_10880 2440071 2440232 + cytochrome c oxidase subunit CcoQ COG4736 Cbb3-type cytochrome oxidase%2C subunit 3 gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10880 amad1_10885 amad1_10885 amad1_10885 2440249 2441202 + cytochrome c oxidase%2C cbb3-type subunit III COG2010 Cytochrome c%2C mono- and diheme variants gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10885 amad1_10890 amad1_10890 amad1_10890 2441471 2441950 + hypothetical protein COG3198 Uncharacterized protein conserved in bacteria gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10890 amad1_10895 amad1_10895 amad1_10895 2441950 2444340 + copper-translocating P-type ATPase COG2217 Cation transport ATPase gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10895 amad1_10900 amad1_10900 amad1_10900 2444342 2444572 + cbb3-type cytochrome oxidase maturation protein COG3197 Uncharacterized protein%2C possibly involved in nitrogen fixation gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10900 amad1_10905 amad1_10905 amad1_10905 2444559 2445218 + integral membrane protein COG2836 Uncharacterized conserved protein gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10905 amad1_10910 amad1_10910 amad1_10910 2445264 2446004 + fumarate/nitrate reduction transcriptional regulator COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10910 amad1_10915 amad1_10915 amad1_10915 2446255 2447178 + universal stress protein UspE COG0589 Universal stress protein UspA and related nucleotide-binding proteins gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10915 amad1_10920 amad1_10920 amad1_10920 2447293 2448246 + tRNA 2-thiocytidine biosynthesis protein TtcA COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10920 amad1_10925 amad1_10925 amad1_10925 2448247 2449272 + Alpha-beta superfamily hydrolase COG1752 Predicted esterase of the alpha-beta hydrolase superfamily gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10925 amad1_10930 amad1_10930 amad1_10930 2449276 2449923 - hypothetical protein gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10930 amad1_10935 amad1_10935 amad1_10935 2449920 2450711 - mannosyl-glycoprotein endo-beta-N-acetylglucosamidase COG2992 Uncharacterized FlgJ-related protein gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10935 amad1_10940 amad1_10940 amad1_10940 2450704 2451483 - stress-induced protein UspE gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10940 amad1_10945 amad1_10945 amad1_10945 2451518 2452144 - lysine exporter protein LysE/YggA COG1280 Putative threonine efflux protein gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10945 amad1_10950 amad1_10950 amad1_10950 2452157 2452888 - NAD-dependent deacetylase COG0846 NAD-dependent protein deacetylases%2C SIR2 family gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10950 amad1_10955 amad1_10955 amad1_10955 2452985 2453815 - rhodanese-related sulfurtransferase COG2897 Rhodanese-related sulfurtransferase gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10955 amad1_10960 amad1_10960 amad1_10960 2453888 2454388 - peroxiredoxin COG2077 Peroxiredoxin gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10960 amad1_10965 amad1_10965 amad1_10965 2454463 2455155 - hypothetical protein COG3148 Uncharacterized conserved protein gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10965 amad1_10970 amad1_10970 amad1_10970 2455769 2456341 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase COG0558 Phosphatidylglycerophosphate synthase gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10970 amad1_10975 amad1_10975 amad1_10975 2456464 2458218 - excinuclease ABC subunit C COG0322 Nuclease subunit of the excinuclease complex gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10975 amad1_10980 amad1_10980 amad1_10980 2458313 2458957 - two component LuxR family transcriptional regulator COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10980 amad1_10985 amad1_10985 amad1_10985 2459376 2460713 - aminotransferase COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10985 amad1_10990 amad1_10990 amad1_10990 2461046 2463157 - hypothetical protein COG1262 Uncharacterized conserved protein gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10990 amad1_10995 amad1_10995 amad1_10995 2463934 2464794 - LigB family enzyme COG3384 Uncharacterized conserved protein gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_10995 amad1_11000 amad1_11000 amad1_11000 2464806 2465261 - putative membrane DoxD-like family protein COG2259 Predicted membrane protein gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11000 amad1_11005 amad1_11005 amad1_11005 2465454 2466359 + LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11005 amad1_11010 amad1_11010 amad1_11010 2466408 2467874 - xanthine/uracil/vitamin C permease gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11010 amad1_11015 amad1_11015 amad1_11015 2468125 2468250 - hypothetical protein gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11015 amad1_11020 amad1_11020 amad1_11020 2468348 2469013 + hypothetical protein COG0670 Integral membrane protein%2C interacts with FtsH gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11020 amad1_11025 amad1_11025 amad1_11025 2469069 2469458 + sulfur transfer complex subunit TusD COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11025 amad1_11030 amad1_11030 amad1_11030 2469458 2469826 + DsrE family protein COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11030 amad1_11035 amad1_11035 amad1_11035 2469826 2470170 + hypothetical protein gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11035 amad1_11040 amad1_11040 amad1_11040 2470167 2470514 + sulfite reductase%2C gamma subunit-like protein COG2920 Dissimilatory sulfite reductase (desulfoviridin)%2C gamma subunit gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11040 amad1_11045 amad1_11045 amad1_11045 2470878 2471315 + hypothetical protein gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11045 amad1_11050 amad1_11050 amad1_11050 2471392 2472138 - hypothetical protein gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11050 amad1_11055 amad1_11055 amad1_11055 2472249 2475155 - TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11055 amad1_11060 amad1_11060 amad1_11060 2475655 2476947 - seryl-tRNA ligase COG0172 Seryl-tRNA synthetase gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11060 amad1_11065 amad1_11065 amad1_11065 2476958 2477341 - camphor resistance protein CrcB COG0239 Integral membrane protein possibly involved in chromosome condensation gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11065 amad1_11070 amad1_11070 amad1_11070 2477445 2478752 - recombination factor protein RarA COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11070 amad1_11075 amad1_11075 amad1_11075 2478739 2479497 - outer membrane lipoprotein carrier protein LolA COG2834 Outer membrane lipoprotein-sorting protein gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11075 amad1_11080 amad1_11080 amad1_11080 2479514 2482276 - cell division protein FtsK COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11080 amad1_11085 amad1_11085 amad1_11085 2482538 2483023 - leucine-responsive transcriptional regulator COG1522 Transcriptional regulators gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11085 amad1_11090 amad1_11090 amad1_11090 2483210 2484343 + alanine dehydrogenase COG0686 Alanine dehydrogenase gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11090 amad1_11095 amad1_11095 amad1_11095 2484518 2485216 - orotidine 5-phosphate decarboxylase COG0284 Orotidine-5'-phosphate decarboxylase gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11095 amad1_11100 amad1_11100 amad1_11100 2485223 2486392 - tetratricopeptide repeat protein COG2956 Predicted N-acetylglucosaminyl transferase gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11100 amad1_11105 amad1_11105 amad1_11105 2486392 2486649 - inner membrane protein COG3771 Predicted membrane protein gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11105 amad1_11110 amad1_11110 amad1_11110 2486733 2489075 - hypothetical protein COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11110 amad1_11115 amad1_11115 amad1_11115 2489283 2489570 - integration host factor subunit beta COG0776 Bacterial nucleoid DNA-binding protein gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11115 amad1_11120 amad1_11120 rpsA rpsA 2489647 2491317 - 30S ribosomal protein S1 COG0539 Ribosomal protein S1 gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11120 amad1_11125 amad1_11125 amad1_11125 2491437 2492108 - cytidylate kinase COG0283 Cytidylate kinase gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11125 amad1_11140 amad1_11140 amad1_11140 2493567 2494652 - 3-phosphoserine/phosphohydroxythreonine aminotransferase COG1932 Phosphoserine aminotransferase gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11140 amad1_11145 amad1_11145 amad1_11145 2494797 2497511 - DNA gyrase subunit A COG0188 Type IIA topoisomerase (DNA gyrase/topo II%2C topoisomerase IV)%2C A subunit gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11145 amad1_11150 amad1_11150 amad1_11150 2497814 2498518 + 3-demethylubiquinone-9 3-methyltransferase COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1%2C4-benzoquinol methylase gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11150 amad1_11155 amad1_11155 amad1_11155 2499067 2501388 + ribonucleotide-diphosphate reductase subunit alpha COG0209 Ribonucleotide reductase%2C alpha subunit gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11155 amad1_11160 amad1_11160 nrdB nrdB 2501511 2502641 + ribonucleotide-diphosphate reductase subunit beta COG0208 Ribonucleotide reductase%2C beta subunit gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11160 amad1_11165 amad1_11165 amad1_11165 2502654 2502926 + iron-sulfur cluster-binding protein COG0633 Ferredoxin gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11165 amad1_11170 amad1_11170 amad1_11170 2502957 2503199 - hypothetical protein COG5460 Uncharacterized conserved protein gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11170 amad1_11175 amad1_11175 amad1_11175 2503636 2504733 + NADH-dependent flavin oxidoreductase%2C Oye family protein COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme family gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11175 amad1_11180 amad1_11180 amad1_11180 2504779 2507163 - GGDEF domain-containing PAS signal transduction protein COG2203 FOG: GAF domain gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11180 amad1_11185 amad1_11185 amad1_11185 2507358 2508233 - permease of the drug/metabolite transporter superfamily protein COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11185 amad1_11190 amad1_11190 amad1_11190 2508423 2509136 - phosphoribosylaminoimidazole-succinocarboxamide synthase COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11190 amad1_11195 amad1_11195 amad1_11195 2509149 2510252 - lipoprotein-34 NlpB COG3317 Uncharacterized lipoprotein gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11195 amad1_11200 amad1_11200 amad1_11200 2510265 2511149 - dihydrodipicolinate synthase COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11200 amad1_11205 amad1_11205 amad1_11205 2511328 2511891 + glycine cleavage system transcriptional repressor COG2716 Glycine cleavage system regulatory protein gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11205 amad1_11210 amad1_11210 bcp bcp 2511869 2512333 + thioredoxin-dependent thiol peroxidase COG1225 Peroxiredoxin gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11210 amad1_11215 amad1_11215 amad1_11215 2512488 2513561 - putative permease COG0628 Predicted permease gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11215 amad1_11220 amad1_11220 amad1_11220 2513891 2515354 + peptidase M48%2C Ste24p COG4783 Putative Zn-dependent protease%2C contains TPR repeats gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11220 amad1_11225 amad1_11225 amad1_11225 2515370 2515876 - Thioredoxin-like protein COG0526 Thiol-disulfide isomerase and thioredoxins gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11225 amad1_11230 amad1_11230 amad1_11230 2516135 2516488 + putative arsenate reductase ArsC COG1393 Arsenate reductase and related proteins%2C glutaredoxin family gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11230 amad1_11235 amad1_11235 amad1_11235 2516488 2517090 + Flavodoxin/nitric oxide synthase COG0655 Multimeric flavodoxin WrbA gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11235 amad1_11240 amad1_11240 amad1_11240 2517183 2517605 + hypothetical protein COG3308 Predicted membrane protein gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11240 amad1_11245 amad1_11245 amad1_11245 2517761 2518498 - chromosomal replication initiator COG0593 ATPase involved in DNA replication initiation gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11245 amad1_11250 amad1_11250 amad1_11250 2518505 2519962 - hypothetical protein COG3249 Uncharacterized protein conserved in bacteria gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11250 amad1_11255 amad1_11255 amad1_11255 2520267 2521307 + phosphoribosylaminoimidazole synthetase COG0150 Phosphoribosylaminoimidazole (AIR) synthetase gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11255 amad1_11260 amad1_11260 amad1_11260 2521304 2521954 + phosphoribosylglycinamide formyltransferase COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11260 amad1_11265 amad1_11265 amad1_11265 2521914 2522657 + hypothetical protein gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11265 amad1_11270 amad1_11270 fadE fadE 2523031 2525493 + acyl-CoA dehydrogenase COG1960 Acyl-CoA dehydrogenases gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11270 amad1_11275 amad1_11275 amad1_11275 2525477 2526178 + hypothetical protein COG2340 Uncharacterized protein with SCP/PR1 domains gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11275 amad1_11280 amad1_11280 amad1_11280 2526205 2526840 - putative regulator in two-component regulatory system COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11280 amad1_11285 amad1_11285 amad1_11285 2527014 2527745 + putative methyltransferase COG0500 SAM-dependent methyltransferases gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11285 amad1_11290 amad1_11290 amad1_11290 2527805 2528803 + tRNA mo(5)U34 methyltransferase COG0500 SAM-dependent methyltransferases gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11290 amad1_11295 amad1_11295 amad1_11295 2528898 2529770 + kinase-like protein COG4240 Predicted kinase gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11295 amad1_11300 amad1_11300 amad1_11300 2529767 2530576 + mannosyl-3-phosphoglycerate phosphatase COG3769 Predicted hydrolase (HAD superfamily) gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11300 amad1_11305 amad1_11305 amad1_11305 2530589 2531812 + cell wall biosynthesis glycosyltransferase COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11305 amad1_11310 amad1_11310 amad1_11310 2531818 2533572 + putative sucrose phosphorylase COG0366 Glycosidases gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11310 amad1_11315 amad1_11315 amad1_11315 2533647 2534324 + phosphoglycolate phosphatase COG0546 Predicted phosphatases gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11315 amad1_11320 amad1_11320 amad1_11320 2534462 2535676 + putative molybdopterin biosynthesis protein MoeA COG0303 Molybdopterin biosynthesis enzyme gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11320 amad1_11325 amad1_11325 amad1_11325 2535808 2537181 + multidrug efflux protein NorA COG0534 Na+-driven multidrug efflux pump gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11325 amad1_11330 amad1_11330 amad1_11330 2537199 2538068 - isoquinoline 1-oxidoreductase maturation factor COG2068 Uncharacterized MobA-related protein gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11330 amad1_11335 amad1_11335 amad1_11335 2538088 2539269 - VWA containing CoxE family protein COG3825 Uncharacterized protein conserved in bacteria gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11335 amad1_11340 amad1_11340 amad1_11340 2539269 2540105 - ATPase COG0714 MoxR-like ATPases gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11340 amad1_11345 amad1_11345 amad1_11345 2540376 2541341 + cysteine synthase A COG0031 Cysteine synthase gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11345 amad1_11350 amad1_11350 amad1_11350 2541586 2542044 + putative lipoprotein gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11350 amad1_11355 amad1_11355 amad1_11355 2542246 2542824 + hypothetical protein gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11355 amad1_11360 amad1_11360 amad1_11360 2542976 2543317 + hypothetical protein gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11360 amad1_11365 amad1_11365 amad1_11365 2543446 2543727 - plasmid stabilization system protein COG3668 Plasmid stabilization system protein gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11365 amad1_11370 amad1_11370 amad1_11370 2543724 2544008 - RelB protein gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11370 amad1_11375 amad1_11375 amad1_11375 2544233 2544580 + RelE-like Cytotoxic translational repressor of toxin-antitoxin stability system COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11375 amad1_11380 amad1_11380 amad1_11380 2544573 2544857 + helix-turn-helix domain-containing protein COG2944 Predicted transcriptional regulator gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11380 amad1_11385 amad1_11385 amad1_11385 2544968 2545258 - RelE/StbE family addiction module toxin gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11385 amad1_11390 amad1_11390 amad1_11390 2545251 2545472 - hypothetical protein gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11390 amad1_11395 amad1_11395 amad1_11395 2545824 2546477 - ISCps8%2C transposase COG3547 Transposase and inactivated derivatives gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11395 amad1_11400 amad1_11400 amad1_11400 2546669 2546926 + antitoxin of toxin-antitoxin stability system COG2161 Antitoxin of toxin-antitoxin stability system gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11400 amad1_11405 amad1_11405 amad1_11405 2546914 2547216 + plasmid stabilization system protein COG3668 Plasmid stabilization system protein gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11405 amad1_11410 amad1_11410 amad1_11410 2547313 2547750 + hypothetical protein gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11410 amad1_11415 amad1_11415 amad1_11415 2548493 2549284 + phenazine biosynthesis protein%2C PhzF family COG0384 Predicted epimerase%2C PhzC/PhzF homolog gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11415 amad1_11420 amad1_11420 amad1_11420 2549406 2551163 - gamma-glutamyltranspeptidase COG0405 Gamma-glutamyltransferase gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11420 amad1_11425 amad1_11425 amad1_11425 2551178 2551942 - enoyl-CoA hydratase COG1024 Enoyl-CoA hydratase/carnithine racemase gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11425 amad1_11430 amad1_11430 amad1_11430 2552056 2552640 + membrane protein%2C Rhomboid family COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11430 amad1_11435 amad1_11435 amad1_11435 2552827 2555322 - dipeptidyl peptidase IV COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11435 amad1_11440 amad1_11440 amad1_11440 2555494 2556048 + Glutathione peroxidase COG0386 Glutathione peroxidase gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11440 amad1_11445 amad1_11445 amad1_11445 2556220 2556822 - (acyl-carrier-protein) phosphodiesterase COG1182 Acyl carrier protein phosphodiesterase gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11445 amad1_11450 amad1_11450 amad1_11450 2557049 2559508 + hypothetical protein COG2319 FOG: WD40 repeat gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11450 amad1_11455 amad1_11455 amad1_11455 2559618 2560814 - hypothetical protein COG2873 O-acetylhomoserine sulfhydrylase gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11455 amad1_11460 amad1_11460 amad1_11460 2560956 2561591 - Acyltransferase family protein COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11460 amad1_11465 amad1_11465 amad1_11465 2561905 2562687 + hypothetical protein COG3332 Uncharacterized conserved protein gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11465 amad1_11470 amad1_11470 amad1_11470 2562835 2564025 + aromatic amino acid aminotransferase COG1448 Aspartate/tyrosine/aromatic aminotransferase gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11470 amad1_11475 amad1_11475 amad1_11475 2564306 2566471 + hypothetical protein gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11475 amad1_11480 amad1_11480 amad1_11480 2566567 2567025 - hypothetical protein COG1671 Uncharacterized protein conserved in bacteria gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11480 amad1_11485 amad1_11485 amad1_11485 2567051 2567812 - short chain dehydrogenase COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11485 amad1_11490 amad1_11490 amad1_11490 2567968 2568735 - short-chain alcohol dehydrogenase-like protein COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11490 amad1_11495 amad1_11495 amad1_11495 2568848 2570650 - acyl-CoA dehydrogenase-like protein COG1960 Acyl-CoA dehydrogenases gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11495 amad1_11500 amad1_11500 amad1_11500 2570649 2571782 + AraC family transcriptional regulator COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11500 amad1_11505 amad1_11505 amad1_11505 2572047 2574323 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11505 amad1_11510 amad1_11510 amad1_11510 2574422 2574778 - hypothetical protein gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11510 amad1_11515 amad1_11515 amad1_11515 2574963 2576234 - maturase COG3344 Retron-type reverse transcriptase gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11515 amad1_11520 amad1_11520 amad1_11520 2576474 2576671 - hypothetical protein gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11520 amad1_11525 amad1_11525 amad1_11525 2577025 2579184 - prolyl endopeptidase COG1505 Serine proteases of the peptidase family S9A gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11525 amad1_11530 amad1_11530 amad1_11530 2579232 2582366 - RND family efflux transporter COG0841 Cation/multidrug efflux pump gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11530 amad1_11535 amad1_11535 amad1_11535 2582366 2583610 - Membrane-fusion protein COG0845 Membrane-fusion protein gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11535 amad1_11540 amad1_11540 amad1_11540 2583997 2584305 + isoamylase protein-like protein gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11540 amad1_11545 amad1_11545 amad1_11545 2584381 2585307 - electron transfer flavoprotein subunit alpha COG2025 Electron transfer flavoprotein%2C alpha subunit gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11545 amad1_11550 amad1_11550 amad1_11550 2585304 2586056 - electron transfer flavoprotein subunit beta COG2086 Electron transfer flavoprotein%2C beta subunit gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11550 amad1_11555 amad1_11555 amad1_11555 2586428 2588077 + electron transfer flavoprotein-ubiquinone oxidoreductase COG0644 Dehydrogenases (flavoproteins) gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11555 amad1_11560 amad1_11560 amad1_11560 2588200 2588598 + DNA-binding protein%2C H-NS family COG2916 DNA-binding protein H-NS gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11560 amad1_11565 amad1_11565 amad1_11565 2588687 2589481 + hypothetical protein COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11565 amad1_11570 amad1_11570 amad1_11570 2589606 2589824 + hypothetical protein gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11570 amad1_11575 amad1_11575 amad1_11575 2589851 2590375 + flavodoxin FldA COG0716 Flavodoxins gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11575 amad1_11580 amad1_11580 amad1_11580 2590511 2592517 - methyl-accepting chemotaxis protein COG0840 Methyl-accepting chemotaxis protein gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11580 amad1_11585 amad1_11585 fur fur 2592833 2593261 + ferric uptake regulator COG0735 Fe2+/Zn2+ uptake regulation proteins gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11585 amad1_11590 amad1_11590 amad1_11590 2593317 2594183 - D-alanine transaminase COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11590 amad1_11595 amad1_11595 amad1_11595 2594180 2595127 - putative carboxylase COG1984 Allophanate hydrolase subunit 2 gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11595 amad1_11600 amad1_11600 amad1_11600 2595117 2595851 - allophanate hydrolase subunit 1 COG2049 Allophanate hydrolase subunit 1 gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11600 amad1_11605 amad1_11605 amad1_11605 2595908 2596645 - LamB/YcsF family protein COG1540 Uncharacterized proteins%2C homologs of lactam utilization protein B gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11605 amad1_11610 amad1_11610 amad1_11610 2596711 2597595 + hypothetical protein COG2996 Uncharacterized protein conserved in bacteria gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11610 amad1_11615 amad1_11615 amad1_11615 2597669 2598061 + putative inner membrane protein COG1765 Predicted redox protein%2C regulator of disulfide bond formation gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11615 amad1_11620 amad1_11620 amad1_11620 2598275 2599405 + HlyD family secretion protein COG0845 Membrane-fusion protein gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11620 amad1_11625 amad1_11625 amad1_11625 2599430 2602798 + AcrB/AcrD/AcrF family protein COG0841 Cation/multidrug efflux pump gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11625 amad1_11630 amad1_11630 amad1_11630 2602795 2605875 + acriflavin resistance protein COG0841 Cation/multidrug efflux pump gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11630 amad1_11635 amad1_11635 amad1_11635 2605980 2606309 - hypothetical protein gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11635 amad1_11640 amad1_11640 amad1_11640 2606709 2607503 - putative cytochrome c oxidase subunit I gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11640 amad1_11645 amad1_11645 amad1_11645 2607776 2608996 + aminotransferase AlaT COG0436 Aspartate/tyrosine/aromatic aminotransferase gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11645 amad1_11650 amad1_11650 amad1_11650 2608998 2609234 + metal dependent phosphohydrolase COG1896 Predicted hydrolases of HD superfamily gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11650 amad1_11655 amad1_11655 amad1_11655 2609319 2609921 + 5'-nucleotidase COG1896 Predicted hydrolases of HD superfamily gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11655 amad1_11660 amad1_11660 amad1_11660 2610270 2610665 - hypothetical protein gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11660 amad1_11665 amad1_11665 amad1_11665 2610960 2613323 - twin-arginine translocation pathway signal protein COG1529 Aerobic-type carbon monoxide dehydrogenase%2C large subunit CoxL/CutL homologs gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11665 amad1_11670 amad1_11670 amad1_11670 2613327 2613869 - (2Fe-2S)-binding protein COG2080 Aerobic-type carbon monoxide dehydrogenase%2C small subunit CoxS/CutS homologs gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11670 amad1_11675 amad1_11675 amad1_11675 2614039 2614554 - hypothetical protein gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11675 amad1_11680 amad1_11680 amad1_11680 2614580 2615707 - aldo/keto reductase precursor COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11680 amad1_11685 amad1_11685 amad1_11685 2615740 2616888 - cupin COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11685 amad1_11690 amad1_11690 amad1_11690 2616923 2618014 - hypothetical protein COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11690 amad1_11695 amad1_11695 amad1_11695 2618027 2619082 - hypothetical protein COG1073 Hydrolases of the alpha/beta superfamily gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11695 amad1_11700 amad1_11700 amad1_11700 2619294 2620214 + AraC-type regulatory protein COG2207 AraC-type DNA-binding domain-containing proteins gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11700 amad1_11705 amad1_11705 amad1_11705 2620979 2621899 + hypothetical protein gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11705 amad1_11710 amad1_11710 amad1_11710 2622103 2622486 + metal dependent phosphohydrolase COG1896 Predicted hydrolases of HD superfamily gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11710 amad1_11715 amad1_11715 amad1_11715 2622566 2623909 + deoxyguanosinetriphosphate triphosphohydrolase-like protein COG0232 dGTP triphosphohydrolase gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11715 amad1_11720 amad1_11720 amad1_11720 2624110 2625117 + TMAO/DMSO reductase COG2041 Sulfite oxidase and related enzymes gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11720 amad1_11725 amad1_11725 amad1_11725 2625226 2625903 + Ferric reductase-like transmembrane protein COG2717 Predicted membrane protein gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11725 amad1_11730 amad1_11730 amad1_11730 2625928 2626326 - hypothetical protein COG1238 Predicted membrane protein gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11730 amad1_11735 amad1_11735 amad1_11735 2626631 2627041 + deoxyguanosinetriphosphate triphosphohydrolase-like protein gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11735 amad1_11740 amad1_11740 amad1_11740 2627199 2627702 + SEC-C motif domain protein COG3012 Uncharacterized protein conserved in bacteria gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11740 amad1_11745 amad1_11745 amad1_11745 2627590 2627733 + hypothetical protein gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11745 amad1_11750 amad1_11750 amad1_11750 2628306 2629280 - Zinc-containing alcohol dehydrogenase superfamily protein COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11750 amad1_11755 amad1_11755 amad1_11755 2629355 2630413 - aminoglycoside phosphotransferase COG3173 Predicted aminoglycoside phosphotransferase gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11755 amad1_11760 amad1_11760 amad1_11760 2630423 2631652 - acyl-CoA dehydrogenase COG1960 Acyl-CoA dehydrogenases gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11760 amad1_11765 amad1_11765 amad1_11765 2631664 2632350 - Phosphoglycerate/bisphosphoglycerate mutase COG0406 Fructose-2%2C6-bisphosphatase gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11765 amad1_11770 amad1_11770 amad1_11770 2632685 2635267 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11770 amad1_11775 amad1_11775 amad1_11775 2635264 2636256 - putative xanthine dehydrogenase accessory factor COG1975 Xanthine and CO dehydrogenases maturation factor%2C XdhC/CoxF family gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11775 amad1_11780 amad1_11780 amad1_11780 2636287 2636922 - DSBA oxidoreductase COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11780 amad1_11785 amad1_11785 amad1_11785 2637059 2637808 - hypothetical protein COG2755 Lysophospholipase L1 and related esterases gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11785 amad1_11790 amad1_11790 amad1_11790 2637892 2639268 + coproporphyrinogen III oxidase COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11790 amad1_11795 amad1_11795 amad1_11795 2639255 2640400 - molybdenum ABC transporter ATP-binding protein COG4148 ABC-type molybdate transport system%2C ATPase component gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11795 amad1_11800 amad1_11800 amad1_11800 2640402 2641142 - molybdenum ABC transporter permease COG4149 ABC-type molybdate transport system%2C permease component gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11800 amad1_11805 amad1_11805 amad1_11805 2641139 2642515 - molybdate-binding periplasmic protein COG0725 ABC-type molybdate transport system%2C periplasmic component gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11805 amad1_11810 amad1_11810 amad1_11810 2642515 2642988 - putative molybdenum cofactor biosynthesisprotein E COG0314 Molybdopterin converting factor%2C large subunit gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11810 amad1_11815 amad1_11815 amad1_11815 2642991 2643239 - molybdopterin converting factor subunit 1 COG1977 Molybdopterin converting factor%2C small subunit gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11815 amad1_11820 amad1_11820 amad1_11820 2643326 2643814 - molybdenum cofactor biosynthesis protein C COG0315 Molybdenum cofactor biosynthesis enzyme gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11820 amad1_11825 amad1_11825 amad1_11825 2643811 2644317 - molybdenum cofactor biosynthesis protein B COG0521 Molybdopterin biosynthesis enzymes gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11825 amad1_11830 amad1_11830 amad1_11830 2644442 2645212 + molybdopterin biosynthesis protein MoeB COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11830 amad1_11835 amad1_11835 amad1_11835 2645304 2646422 + succinylglutamate desuccinylase/aspartoacylase COG3608 Predicted deacylase gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11835 amad1_11840 amad1_11840 amad1_11840 2646775 2647029 + prevent-host-death family protein COG2161 Antitoxin of toxin-antitoxin stability system gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11840 amad1_11845 amad1_11845 amad1_11845 2647022 2647285 + addiction module antitoxin COG4115 Uncharacterized protein conserved in bacteria gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11845 amad1_11850 amad1_11850 amad1_11850 2647425 2648081 - hypothetical protein gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11850 amad1_11855 amad1_11855 amad1_11855 2648097 2650544 - extracellular metal-dependent peptidase gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11855 amad1_11860 amad1_11860 amad1_11860 2650718 2651950 + aspartate aminotransferase COG0436 Aspartate/tyrosine/aromatic aminotransferase gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11860 amad1_11865 amad1_11865 amad1_11865 2652086 2653261 + saccharopine dehydrogenase COG3268 Uncharacterized conserved protein gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11865 amad1_11870 amad1_11870 amad1_11870 2653486 2654667 - histidinol-phosphate aminotransferase COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11870 amad1_11875 amad1_11875 amad1_11875 2655039 2655302 + hypothetical protein gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11875 amad1_11880 amad1_11880 amad1_11880 2655587 2656564 + hypothetical protein gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11880 amad1_11885 amad1_11885 amad1_11885 2656704 2657744 + 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase COG0620 Methionine synthase II (cobalamin-independent) gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11885 amad1_11890 amad1_11890 amad1_11890 2658455 2661295 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11890 amad1_11895 amad1_11895 amad1_11895 2661391 2661693 - hypothetical protein COG2030 Acyl dehydratase gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11895 amad1_11900 amad1_11900 amad1_11900 2662283 2663155 + transporter involved in threonine and homoserine efflux COG5006 Predicted permease%2C DMT superfamily gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11900 amad1_11905 amad1_11905 amad1_11905 2663315 2663632 - hypothetical protein gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11905 amad1_11910 amad1_11910 amad1_11910 2663794 2664201 + hypothetical protein gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11910 amad1_11915 amad1_11915 amad1_11915 2664242 2666437 - exodeoxyribonuclease V subunit alpha COG0507 ATP-dependent exoDNAse (exonuclease V)%2C alpha subunit - helicase superfamily I member gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11915 amad1_11920 amad1_11920 amad1_11920 2666446 2670456 - exodeoxyribonuclease V subunit beta COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11920 amad1_11925 amad1_11925 amad1_11925 2670453 2674073 - exodeoxyribonuclease V subunit gamma COG1330 Exonuclease V gamma subunit gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11925 amad1_11930 amad1_11930 amad1_11930 2674210 2674479 + hypothetical protein gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11930 amad1_11935 amad1_11935 amad1_11935 2674579 2674737 + hypothetical protein gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11935 amad1_11940 amad1_11940 amad1_11940 2674737 2675390 + leucyl/phenylalanyl-tRNA--protein transferase gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11940 amad1_11945 amad1_11945 amad1_11945 2675582 2677261 - AMP-binding protein COG1022 Long-chain acyl-CoA synthetases (AMP-forming) gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11945 amad1_11950 amad1_11950 amad1_11950 2677481 2681659 - sensory box/GGDEF/EAL domain-containing protein COG5001 Predicted signal transduction protein containing a membrane domain%2C an EAL and a GGDEF domain gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11950 amad1_11955 amad1_11955 amad1_11955 2681872 2683257 - metallo-beta-lactamase family protein COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11955 amad1_11960 amad1_11960 amad1_11960 2683326 2683559 - hypothetical protein gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11960 amad1_11965 amad1_11965 amad1_11965 2683703 2684053 - hypothetical protein gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11965 amad1_11970 amad1_11970 amad1_11970 2684127 2684957 - LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11970 amad1_11975 amad1_11975 amad1_11975 2685084 2685251 - hypothetical protein gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11975 amad1_11980 amad1_11980 amad1_11980 2685653 2686009 + transposase COG3085 Uncharacterized protein conserved in bacteria gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11980 amad1_11985 amad1_11985 amad1_11985 2686205 2686954 + hypothetical protein COG3861 Uncharacterized protein conserved in bacteria gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11985 amad1_11990 amad1_11990 amad1_11990 2687048 2687359 - ArsR family transcriptional regulator COG0640 Predicted transcriptional regulators gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11990 amad1_11995 amad1_11995 amad1_11995 2687557 2687910 + hypothetical protein COG0607 Rhodanese-related sulfurtransferase gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_11995 amad1_12000 amad1_12000 amad1_12000 2687962 2688885 + LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12000 amad1_12005 amad1_12005 amad1_12005 2688908 2689513 - exopolysaccharide synthesis protein COG3932 Uncharacterized ABC-type transport system%2C permease components gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12005 amad1_12010 amad1_12010 amad1_12010 2690001 2691332 + putative sigma-54 interacting response regulator protein COG2204 Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12010 amad1_12015 amad1_12015 amad1_12015 2691352 2691576 + hypothetical protein COG0642 Signal transduction histidine kinase gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12015 amad1_12020 amad1_12020 amad1_12020 2691581 2693083 + putative two-component sensor histidine kinase COG0642 Signal transduction histidine kinase gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12020 amad1_12025 amad1_12025 amad1_12025 2693080 2693532 + putative two-component response regulator COG0784 FOG: CheY-like receiver gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12025 amad1_12030 amad1_12030 amad1_12030 2693545 2695653 + putative two-component sensor histidine kinase and response regulator hybrid COG0642 Signal transduction histidine kinase gene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12030 amad1_12035 amad1_12035 amad1_12035 2695842 2696171 + hypothetical protein gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12035 amad1_12040 amad1_12040 amad1_12040 2696175 2696687 + hypothetical protein gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12040 amad1_12045 amad1_12045 amad1_12045 2696747 2697004 + hypothetical protein gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12045 amad1_12050 amad1_12050 amad1_12050 2697031 2697606 + hypothetical protein gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12050 amad1_12055 amad1_12055 amad1_12055 2697642 2698295 - 5'-nucleotidase COG1896 Predicted hydrolases of HD superfamily gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12055 amad1_12060 amad1_12060 amad1_12060 2698552 2698728 + hypothetical protein gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12060 amad1_12065 amad1_12065 amad1_12065 2698767 2698961 + hypothetical protein gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12065 amad1_12070 amad1_12070 amad1_12070 2699028 2699246 - hypothetical protein gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12070 amad1_12075 amad1_12075 amad1_12075 2699247 2702153 - hypothetical protein gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12075 amad1_12080 amad1_12080 amad1_12080 2702143 2702436 - hypothetical protein COG3139 Uncharacterized protein conserved in bacteria gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12080 amad1_12085 amad1_12085 amad1_12085 2702437 2702763 - hypothetical protein gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12085 amad1_12090 amad1_12090 amad1_12090 2702764 2702964 + hypothetical protein gene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12090 amad1_12095 amad1_12095 amad1_12095 2703024 2704682 - Na(+)-linked D-alanine glycine permease COG1115 Na+/alanine symporter gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12095 amad1_12100 amad1_12100 amad1_12100 2704795 2705934 - peptidase M14%2C carboxypeptidase A COG2866 Predicted carboxypeptidase gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12100 amad1_12105 amad1_12105 amad1_12105 2706140 2707585 - glyceraldehyde-3-phosphate dehydrogenase COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12105 amad1_12110 amad1_12110 amad1_12110 2707779 2708663 + hypothetical protein gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12110 amad1_12115 amad1_12115 amad1_12115 2708826 2709254 - methionine sulfoxide reductase B COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12115 amad1_12120 amad1_12120 amad1_12120 2709371 2710924 - 6-phosphogluconate dehydrogenase COG0362 6-phosphogluconate dehydrogenase gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12120 amad1_12125 amad1_12125 amad1_12125 2711244 2713331 - glycogen debranching protein GlgX COG1523 Type II secretory pathway%2C pullulanase PulA and related glycosidases gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12125 amad1_12130 amad1_12130 amad1_12130 2713361 2715553 - glycogen branching enzyme COG0296 1%2C4-alpha-glucan branching enzyme gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12130 amad1_12135 amad1_12135 malQ malQ 2715716 2717914 - 4-alpha-glucanotransferase COG1640 4-alpha-glucanotransferase gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12135 amad1_12140 amad1_12140 amad1_12140 2718151 2719146 + glyceraldehyde-3-phosphate dehydrogenase COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12140 amad1_12145 amad1_12145 amad1_12145 2719370 2720221 + aldose 1-epimerase COG0676 Uncharacterized enzymes related to aldose 1-epimerase gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12145 amad1_12150 amad1_12150 amad1_12150 2720366 2721010 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12150 amad1_12155 amad1_12155 amad1_12155 2721014 2721967 - glucokinase COG0837 Glucokinase gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12155 amad1_12160 amad1_12160 amad1_12160 2721967 2723793 - phosphogluconate dehydratase COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12160 amad1_12165 amad1_12165 amad1_12165 2723803 2724495 - 6-phosphogluconolactonase COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12165 amad1_12170 amad1_12170 amad1_12170 2724497 2725990 - glucose-6-phosphate 1-dehydrogenase COG0364 Glucose-6-phosphate 1-dehydrogenase gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12170 amad1_12175 amad1_12175 amad1_12175 2726274 2727125 + DNA-binding transcriptional regulator HexR COG1737 Transcriptional regulators gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12175 amad1_12180 amad1_12180 amad1_12180 2727579 2729015 + pyruvate kinase II COG0469 Pyruvate kinase gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12180 amad1_12185 amad1_12185 amad1_12185 2728947 2730494 - putative metal-dependent amidohydrolase COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12185 amad1_12190 amad1_12190 amad1_12190 2730700 2731713 + AraC family transcriptional regulator COG2207 AraC-type DNA-binding domain-containing proteins gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12190 amad1_12195 amad1_12195 amad1_12195 2731902 2733683 + acyl-CoA dehydrogenase domain-containing protein COG1960 Acyl-CoA dehydrogenases gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12195 amad1_12200 amad1_12200 amad1_12200 2733704 2734453 + electron transfer flavoprotein subunit alpha/beta COG2086 Electron transfer flavoprotein%2C beta subunit gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12200 amad1_12205 amad1_12205 amad1_12205 2734453 2735394 + electron transfer flavoprotein alpha/beta-subunit COG2025 Electron transfer flavoprotein%2C alpha subunit gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12205 amad1_12210 amad1_12210 amad1_12210 2735420 2737075 + electron-transferring-flavoprotein dehydrogenase COG0644 Dehydrogenases (flavoproteins) gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12210 amad1_12215 amad1_12215 amad1_12215 2737253 2737864 + citrate transporter COG0471 Di- and tricarboxylate transporters gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12215 amad1_12220 amad1_12220 amad1_12220 2738073 2739572 - Putative transposase gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12220 amad1_12225 amad1_12225 amad1_12225 2739896 2740540 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12225 amad1_12230 amad1_12230 amad1_12230 2740544 2741497 - glucokinase COG0837 Glucokinase gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12230 amad1_12235 amad1_12235 amad1_12235 2741497 2743323 - phosphogluconate dehydratase COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12235 amad1_12240 amad1_12240 amad1_12240 2743333 2744025 - 6-phosphogluconolactonase COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12240 amad1_12245 amad1_12245 amad1_12245 2744027 2745520 - glucose-6-phosphate 1-dehydrogenase COG0364 Glucose-6-phosphate 1-dehydrogenase gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12245 amad1_12250 amad1_12250 amad1_12250 2745805 2746656 + DNA-binding transcriptional regulator HexR COG1737 Transcriptional regulators gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12250 amad1_12255 amad1_12255 amad1_12255 2746895 2748331 + pyruvate kinase II COG0469 Pyruvate kinase gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12255 amad1_12260 amad1_12260 amad1_12260 2748514 2749419 + putative MTA/SAH nucleosidase COG0775 Nucleoside phosphorylase gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12260 amad1_12265 amad1_12265 amad1_12265 2749475 2749852 - hypothetical protein gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12265 amad1_12280 amad1_12280 amad1_12280 2751065 2751664 - hypothetical protein COG2823 Predicted periplasmic or secreted lipoprotein gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12280 amad1_12285 amad1_12285 amad1_12285 2752121 2753098 + endonuclease/exonuclease/phosphatase COG3021 Uncharacterized protein conserved in bacteria gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12285 amad1_12290 amad1_12290 amad1_12290 2753132 2753680 - hypothetical protein gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12290 amad1_12295 amad1_12295 amad1_12295 2753898 2754086 - hypothetical protein gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12295 amad1_12300 amad1_12300 amad1_12300 2754114 2755097 + family 2 glycosyl transferase COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12300 amad1_12305 amad1_12305 amad1_12305 2755121 2755795 + hypothetical protein COG3403 Uncharacterized conserved protein gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12305 amad1_12310 amad1_12310 amad1_12310 2755813 2756406 + hypothetical protein COG3665 Uncharacterized conserved protein gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12310 amad1_12315 amad1_12315 amad1_12315 2756447 2758189 - hypothetical protein gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12315 amad1_12320 amad1_12320 amad1_12320 2758255 2760120 - putative cell surface protein COG3211 Predicted phosphatase gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12320 amad1_12340 amad1_12340 amad1_12340 2762673 2763560 - hypothetical protein COG2378 Predicted transcriptional regulator gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12340 amad1_12345 amad1_12345 amad1_12345 2763676 2764287 - hypothetical protein gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12345 amad1_12350 amad1_12350 amad1_12350 2764299 2768348 - extracellular ribonuclease/nuclease fusion protein COG2356 Endonuclease I gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12350 amad1_12355 amad1_12355 amad1_12355 2768765 2770684 - methyl-accepting chemotaxis protein COG0840 Methyl-accepting chemotaxis protein gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12355 amad1_12360 amad1_12360 amad1_12360 2770883 2771134 - hypothetical protein gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12360 amad1_12365 amad1_12365 amad1_12365 2771291 2771695 + phosphate ABC transporter periplasmic protein COG0226 ABC-type phosphate transport system%2C periplasmic component gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12365 amad1_12370 amad1_12370 amad1_12370 2771762 2772670 - LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12370 amad1_12375 amad1_12375 amad1_12375 2772803 2773957 + Iron-containing alcohol dehydrogenase COG1979 Uncharacterized oxidoreductases%2C Fe-dependent alcohol dehydrogenase family gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12375 amad1_12380 amad1_12380 amad1_12380 2774155 2776047 + putative diguanylate cyclase/phosphodiesterase COG5001 Predicted signal transduction protein containing a membrane domain%2C an EAL and a GGDEF domain gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12380 amad1_12385 amad1_12385 amad1_12385 2776103 2776774 - putative oxidoreductase COG0778 Nitroreductase gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12385 amad1_12390 amad1_12390 amad1_12390 2777098 2778627 + Response regulator COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12390 amad1_12395 amad1_12395 amad1_12395 2778624 2779976 + sensor histidine kinase COG2203 FOG: GAF domain gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12395 amad1_12400 amad1_12400 amad1_12400 2780099 2780335 + epoxide hydrolase COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12400 amad1_12405 amad1_12405 amad1_12405 2780632 2781900 - integrase COG0582 Integrase gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12405 amad1_12410 amad1_12410 amad1_12410 2781900 2782112 - hypothetical protein gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12410 amad1_12415 amad1_12415 amad1_12415 2783188 2784708 + DNA-cytosine methyltransferase COG0270 Site-specific DNA methylase gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12415 amad1_12420 amad1_12420 amad1_12420 2784879 2786393 - transposase IS66 COG3436 Transposase and inactivated derivatives gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12420 amad1_12425 amad1_12425 amad1_12425 2786476 2786823 - IS66 Orf2 family protein COG3436 Transposase and inactivated derivatives gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12425 amad1_12430 amad1_12430 amad1_12430 2786820 2787125 - hypothetical protein COG2801 Transposase and inactivated derivatives gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12430 amad1_12435 amad1_12435 amad1_12435 2787172 2788041 - ATP-binding region%2C ATPase-like protein COG3850 Signal transduction histidine kinase%2C nitrate/nitrite-specific gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12435 amad1_12440 amad1_12440 amad1_12440 2788041 2789894 - hypothetical protein gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12440 amad1_12445 amad1_12445 amad1_12445 2789905 2793609 - helicase domain-containing protein COG0513 Superfamily II DNA and RNA helicases gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12445 amad1_12450 amad1_12450 amad1_12450 2793611 2795323 - NERD and DEXDc domain protein COG1066 Predicted ATP-dependent serine protease gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12450 amad1_12455 amad1_12455 amad1_12455 2795330 2796685 - hypothetical protein gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12455 amad1_12460 amad1_12460 amad1_12460 2796682 2797482 - hypothetical protein gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12460 amad1_12465 amad1_12465 amad1_12465 2798469 2799587 + hypothetical protein COG1846 Transcriptional regulators gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12465 amad1_12470 amad1_12470 amad1_12470 2800171 2800437 + hypothetical protein gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12470 amad1_12475 amad1_12475 amad1_12475 2800615 2801370 - hypothetical protein gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12475 amad1_12480 amad1_12480 amad1_12480 2802580 2802981 - hypothetical protein gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12480 amad1_12485 amad1_12485 amad1_12485 2803427 2804863 - Na+/dicarboxylate symporter COG0471 Di- and tricarboxylate transporters gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12485 amad1_12490 amad1_12490 dcd dcd 2805033 2805626 - deoxycytidine triphosphate deaminase COG0717 Deoxycytidine deaminase gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12490 amad1_12495 amad1_12495 amad1_12495 2805783 2806889 - ATP-binding protein%2C Mrp/Nbp35 family COG0489 ATPases involved in chromosome partitioning gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12495 amad1_12500 amad1_12500 metG metG 2806998 2809025 + methionyl-tRNA ligase COG0143 Methionyl-tRNA synthetase gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12500 amad1_12505 amad1_12505 amad1_12505 2809371 2810210 + small-conductance mechanosensitive channel COG0668 Small-conductance mechanosensitive channel gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12505 amad1_12510 amad1_12510 amad1_12510 2810390 2811247 - SAM-dependent methyltransferase COG0500 SAM-dependent methyltransferases gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12510 amad1_12515 amad1_12515 amad1_12515 2811332 2812123 + hydroxyacylglutathione hydrolase COG0491 Zn-dependent hydrolases%2C including glyoxylases gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12515 amad1_12520 amad1_12520 amad1_12520 2812188 2813852 + putative membrane-bound lytic murein transglycosylase COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12520 amad1_12525 amad1_12525 amad1_12525 2813887 2814918 + hypothetical protein gene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12525 amad1_12530 amad1_12530 amad1_12530 2814915 2815130 - hypothetical protein gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12530 amad1_12535 amad1_12535 amad1_12535 2815129 2815464 + halomucin gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12535 amad1_12540 amad1_12540 amad1_12540 2815548 2815655 + hypothetical protein gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12540 amad1_12545 amad1_12545 cysS cysS 2815778 2817160 - cysteinyl-tRNA ligase COG0215 Cysteinyl-tRNA synthetase gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12545 amad1_12550 amad1_12550 amad1_12550 2817324 2817815 + peptidyl-prolyl cis-trans isomerase B COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12550 amad1_12555 amad1_12555 amad1_12555 2817944 2818669 + UDP-2%2C3-diacylglucosamine hydrolase COG2908 Uncharacterized protein conserved in bacteria gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12555 amad1_12560 amad1_12560 amad1_12560 2818902 2819516 + hypothetical protein gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12560 amad1_12565 amad1_12565 amad1_12565 2819536 2821305 + hypothetical protein COG2268 Uncharacterized protein conserved in bacteria gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12565 amad1_12570 amad1_12570 amad1_12570 2821414 2821599 + hypothetical protein gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12570 amad1_12575 amad1_12575 amad1_12575 2821909 2823405 + sucrose phosphorylase COG0366 Glycosidases gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12575 amad1_12580 amad1_12580 amad1_12580 2823508 2823930 - transcriptional regulator COG1733 Predicted transcriptional regulators gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12580 amad1_12585 amad1_12585 amad1_12585 2824104 2825093 + zinc-containing alcohol dehydrogenase COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12585 amad1_12590 amad1_12590 amad1_12590 2825174 2827243 - catalase COG0753 Catalase gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12590 amad1_12595 amad1_12595 amad1_12595 2827523 2828536 - oxidoreductase zinc-binding protein COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12595 amad1_12600 amad1_12600 amad1_12600 2828637 2829554 + LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12600 amad1_12605 amad1_12605 amad1_12605 2829583 2830062 - invasion associated locus B gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12605 amad1_12610 amad1_12610 amad1_12610 2830119 2831372 - Nidogen%2C extracellular region gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12610 amad1_12615 amad1_12615 amad1_12615 2831547 2833142 - serine carboxypeptidase COG2939 Carboxypeptidase C (cathepsin A) gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12615 amad1_12620 amad1_12620 amad1_12620 2833319 2833924 - hypothetical protein COG3124 Uncharacterized protein conserved in bacteria gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12620 amad1_12625 amad1_12625 amad1_12625 2834091 2834873 + tRNA-(MS 2)O6-A-hydroxylase COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12625 amad1_12630 amad1_12630 amad1_12630 2835080 2835679 + hypothetical protein gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12630 amad1_12635 amad1_12635 amad1_12635 2835739 2837262 - amidophosphoribosyltransferase COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12635 amad1_12640 amad1_12640 amad1_12640 2837277 2837765 - colicin V production protein COG1286 Uncharacterized membrane protein%2C required for colicin V production gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12640 amad1_12645 amad1_12645 amad1_12645 2837896 2838507 - dedD protein COG3147 Uncharacterized protein conserved in bacteria gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12645 amad1_12650 amad1_12650 amad1_12650 2838556 2839887 - bifunctional folylpolyglutamate synthase/dihydrofolate synthase COG0285 Folylpolyglutamate synthase gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12650 amad1_12655 amad1_12655 amad1_12655 2839887 2840732 - acetyl-CoA carboxylase%2C carboxyl transferase subunit beta COG0777 Acetyl-CoA carboxylase beta subunit gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12655 amad1_12660 amad1_12660 truA truA 2841029 2841820 - tRNA pseudouridine synthase A COG0101 Pseudouridylate synthase gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12660 amad1_12665 amad1_12665 amad1_12665 2841976 2846124 - AAA ATPase containing von Willebrand factor type A (vWA) COG3170 Tfp pilus assembly protein FimV gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12665 amad1_12670 amad1_12670 amad1_12670 2846568 2847584 - aspartate-semialdehyde dehydrogenase COG0136 Aspartate-semialdehyde dehydrogenase gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12670 amad1_12675 amad1_12675 amad1_12675 2847614 2848822 - erythronate-4-phosphate dehydrogenase COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12675 amad1_12680 amad1_12680 amad1_12680 2849063 2849818 - class II aldolase/adducin-like protein COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12680 amad1_12685 amad1_12685 amad1_12685 2849995 2850684 + cyclic nucleotide-binding protein COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12685 amad1_12690 amad1_12690 amad1_12690 2850820 2851116 - hypothetical protein COG3668 Plasmid stabilization system protein gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12690 amad1_12695 amad1_12695 amad1_12695 2851113 2851343 - helix-turn-helix protein%2C CopG COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12695 amad1_12700 amad1_12700 amad1_12700 2851820 2853535 + penicillin-binding protein COG1680 Beta-lactamase class C and other penicillin binding proteins gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12700 amad1_12705 amad1_12705 amad1_12705 2853652 2854866 - 3-oxoacyl-ACP synthase COG0304 3-oxoacyl-(acyl-carrier-protein) synthase gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12705 amad1_12710 amad1_12710 amad1_12710 2855160 2856725 - acyl-CoA synthase COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12710 amad1_12715 amad1_12715 amad1_12715 2856949 2858223 + kelch motif domain-containing protein COG3055 Uncharacterized protein conserved in bacteria gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12715 amad1_12720 amad1_12720 amad1_12720 2858227 2860452 + fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification COG4121 Uncharacterized conserved protein gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12720 amad1_12725 amad1_12725 amad1_12725 2860561 2861301 - hypothetical protein COG0459 Chaperonin GroEL (HSP60 family) gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12725 amad1_12730 amad1_12730 amad1_12730 2861312 2862076 - lipoprotein gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12730 amad1_12735 amad1_12735 amad1_12735 2862081 2862746 - hypothetical protein gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12735 amad1_12740 amad1_12740 amad1_12740 2863081 2863425 - Lactoylglutathione lyase 2396 COG0346 Lactoylglutathione lyase and related lyases gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12740 amad1_12745 amad1_12745 amad1_12745 2863473 2863910 - CN5-related N-acetyltransferase COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12745 amad1_12750 amad1_12750 amad1_12750 2863997 2864482 - hypothetical protein gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12750 amad1_12755 amad1_12755 amad1_12755 2864574 2864987 + transcriptional regulator%2C MerR family protein COG0789 Predicted transcriptional regulators gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12755 amad1_12760 amad1_12760 amad1_12760 2865055 2866233 - alcohol dehydrogenase zinc-binding domain-containing protein COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12760 amad1_12765 amad1_12765 amad1_12765 2866364 2867428 - hypothetical protein gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12765 amad1_12770 amad1_12770 amad1_12770 2867446 2868834 - hypothetical protein COG2989 Uncharacterized protein conserved in bacteria gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12770 amad1_12775 amad1_12775 amad1_12775 2869115 2869504 - hypothetical protein gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12775 amad1_12780 amad1_12780 amad1_12780 2869524 2870012 - acetyltransferase COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12780 amad1_12785 amad1_12785 amad1_12785 2870018 2870749 - Oxidoreductase%2C short-chain dehydrogenase/reductase family protein COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12785 amad1_12790 amad1_12790 amad1_12790 2870903 2872381 + putative anion ABC transporter ATP-binding protein COG1119 ABC-type molybdenum transport system%2C ATPase component/photorepair protein PhrA gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12790 amad1_12795 amad1_12795 amad1_12795 2872491 2873798 - Short chain fatty acid transporter COG2031 Short chain fatty acids transporter gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12795 amad1_12800 amad1_12800 amad1_12800 2873874 2877929 - GGDEF domain protein COG3292 Predicted periplasmic ligand-binding sensor domain gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12800 amad1_12805 amad1_12805 amad1_12805 2878256 2878603 + Alkylhydroperoxidase COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12805 amad1_12810 amad1_12810 amad1_12810 2878657 2881410 - Peptidase%2C M16 family protein COG0612 Predicted Zn-dependent peptidases gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12810 amad1_12815 amad1_12815 amad1_12815 2881596 2881889 - hypothetical protein gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12815 amad1_12820 amad1_12820 amad1_12820 2881978 2883126 - ATP-NAD/AcoX kinase COG3199 Uncharacterized conserved protein gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12820 amad1_12825 amad1_12825 amad1_12825 2883123 2883746 - hypothetical protein COG3101 Uncharacterized protein conserved in bacteria gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12825 amad1_12830 amad1_12830 amad1_12830 2883735 2883869 + hypothetical protein gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12830 amad1_12835 amad1_12835 amad1_12835 2883901 2884611 + hypothetical protein gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12835 amad1_12840 amad1_12840 amad1_12840 2884678 2885124 + thioesterase superfamily protein COG0824 Predicted thioesterase gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12840 amad1_12845 amad1_12845 amad1_12845 2885124 2886341 + peptidase A2A%2C retrovirus%2C catalytic COG3577 Predicted aspartyl protease gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12845 amad1_12850 amad1_12850 amad1_12850 2886403 2886762 - hypothetical protein gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12850 amad1_12855 amad1_12855 amad1_12855 2886923 2888965 - 2%2C4-dienoyl-CoA reductase COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme family gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12855 amad1_12860 amad1_12860 amad1_12860 2889190 2890029 - enoyl-CoA hydratase/isomerase COG1024 Enoyl-CoA hydratase/carnithine racemase gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12860 amad1_12865 amad1_12865 amad1_12865 2890167 2890772 + TetR family transcriptional regulator COG1309 Transcriptional regulator gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12865 amad1_12870 amad1_12870 amad1_12870 2890775 2892427 - alcohol dehydrogenase COG2303 Choline dehydrogenase and related flavoproteins gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12870 amad1_12875 amad1_12875 amad1_12875 2892642 2893367 + hypothetical protein gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12875 amad1_12880 amad1_12880 amad1_12880 2893386 2894825 - hypothetical protein gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12880 amad1_12885 amad1_12885 amad1_12885 2894836 2895501 - transcriptional regulator PhaD COG1309 Transcriptional regulator gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12885 amad1_12890 amad1_12890 amad1_12890 2895532 2896740 - hypothetical protein COG4399 Uncharacterized protein conserved in bacteria gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12890 amad1_12895 amad1_12895 amad1_12895 2897146 2898606 + esterase COG1752 Predicted esterase of the alpha-beta hydrolase superfamily gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12895 amad1_12900 amad1_12900 amad1_12900 2898685 2900118 + hypothetical protein gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12900 amad1_12905 amad1_12905 amad1_12905 2900181 2900975 - hypothetical protein gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12905 amad1_12910 amad1_12910 amad1_12910 2901140 2901499 - hypothetical protein gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12910 amad1_12915 amad1_12915 amad1_12915 2901671 2903848 - Protease II COG1770 Protease II gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12915 amad1_12920 amad1_12920 amad1_12920 2904256 2904966 - fatty acid metabolism regulator COG2186 Transcriptional regulators gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12920 amad1_12925 amad1_12925 nhaB nhaB 2905398 2906972 + sodium/proton antiporter COG3067 Na+/H+ antiporter gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12925 amad1_12930 amad1_12930 amad1_12930 2906976 2907503 + disulfide bond formation protein B COG1495 Disulfide bond formation protein DsbB gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12930 amad1_12935 amad1_12935 amad1_12935 2907500 2908054 + ribosomal-protein-serine acetyltransferase COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12935 amad1_12940 amad1_12940 amad1_12940 2908086 2909372 - hypothetical protein gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12940 amad1_12945 amad1_12945 amad1_12945 2909514 2910008 - hypothetical protein COG2983 Uncharacterized conserved protein gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12945 amad1_12950 amad1_12950 amad1_12950 2910005 2910673 - hypothetical protein COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1%2C7-dioic acid hydratase (catechol pathway) gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12950 amad1_12955 amad1_12955 amad1_12955 2910673 2911737 - putative transglycosylase COG2951 Membrane-bound lytic murein transglycosylase B gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12955 amad1_12960 amad1_12960 amad1_12960 2911746 2912042 - hypothetical protein COG3100 Uncharacterized protein conserved in bacteria gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12960 amad1_12965 amad1_12965 amad1_12965 2912101 2913072 - ribonuclease D COG0349 Ribonuclease D gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12965 amad1_12970 amad1_12970 amad1_12970 2913324 2914976 - acyl-CoA synthetase COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12970 amad1_12975 amad1_12975 amad1_12975 2915098 2915937 - alpha/beta fold superfamily hydrolase COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12975 amad1_12980 amad1_12980 amad1_12980 2916034 2916690 - Starvation-inducible outer membrane lipoprotein COG3065 Starvation-inducible outer membrane lipoprotein gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12980 amad1_12985 amad1_12985 amad1_12985 2917076 2917369 - hypothetical protein gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12985 amad1_12990 amad1_12990 amad1_12990 2917480 2918190 - peptidase M22%2C glycoprotease COG1214 Inactive homolog of metal-dependent proteases%2C putative molecular chaperone gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12990 amad1_12995 amad1_12995 amad1_12995 2918269 2920188 - ATP-dependent helicase COG1199 Rad3-related DNA helicases gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_12995 amad1_13000 amad1_13000 amad1_13000 2920599 2921264 + putative calcium binding protein gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13000 amad1_13005 amad1_13005 amad1_13005 2921409 2922011 + hypothetical protein COG0671 Membrane-associated phospholipid phosphatase gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13005 amad1_13010 amad1_13010 amad1_13010 2922133 2922459 - hypothetical protein gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13010 amad1_13015 amad1_13015 amad1_13015 2922660 2922878 - hypothetical protein gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13015 amad1_13020 amad1_13020 amad1_13020 2922997 2924301 - alpha-amylase COG0366 Glycosidases gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13020 amad1_13025 amad1_13025 amad1_13025 2924386 2925294 - hypothetical protein gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13025 amad1_13030 amad1_13030 amad1_13030 2925446 2925928 + hypothetical protein gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13030 amad1_13035 amad1_13035 amad1_13035 2926077 2926322 + Na(+)-translocating NADH-quinone reductase subunit B gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13035 amad1_13040 amad1_13040 amad1_13040 2926487 2927059 + putative lipoprotein COG2930 Uncharacterized conserved protein gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13040 amad1_13045 amad1_13045 amad1_13045 2927056 2928780 - enterobactin receptor protein COG4771 Outer membrane receptor for ferrienterochelin and colicins gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13045 amad1_13050 amad1_13050 amad1_13050 2928972 2929217 - hypothetical protein gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13050 amad1_13055 amad1_13055 hisG hisG 2929619 2930521 + ATP phosphoribosyltransferase COG0040 ATP phosphoribosyltransferase gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13055 amad1_13060 amad1_13060 amad1_13060 2930535 2931839 + histidinol dehydrogenase COG0141 Histidinol dehydrogenase gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13060 amad1_13065 amad1_13065 amad1_13065 2931839 2932918 + histidinol-phosphate aminotransferase COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13065 amad1_13070 amad1_13070 amad1_13070 2932915 2933985 + imidazole glycerol-phosphate dehydratase/histidinol phosphatase COG0241 Histidinol phosphatase and related phosphatases gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13070 amad1_13075 amad1_13075 amad1_13075 2933985 2934614 + imidazole glycerol phosphate synthase subunit HisH COG0118 Glutamine amidotransferase gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13075 amad1_13080 amad1_13080 amad1_13080 2934614 2935351 + 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13080 amad1_13085 amad1_13085 amad1_13085 2935333 2936145 + imidazole glycerol phosphate synthase subunit HisF COG0107 Imidazoleglycerol-phosphate synthase gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13085 amad1_13090 amad1_13090 amad1_13090 2936142 2936759 + phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase COG0139 Phosphoribosyl-AMP cyclohydrolase gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13090 amad1_13095 amad1_13095 amad1_13095 2937021 2937848 + hypothetical protein gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13095 amad1_13100 amad1_13100 amad1_13100 2938067 2938927 - putative esterase COG2819 Predicted hydrolase of the alpha/beta superfamily gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13100 amad1_13105 amad1_13105 amad1_13105 2939019 2939864 - putative transporter (formate/nitrite transporter family) protein COG2116 Formate/nitrite family of transporters gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13105 amad1_13110 amad1_13110 amad1_13110 2940123 2943038 - peptidase%2C M16 family protein COG1025 Secreted/periplasmic Zn-dependent peptidases%2C insulinase-like gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13110 amad1_13115 amad1_13115 amad1_13115 2943369 2944022 + signal peptidase I COG0681 Signal peptidase I gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13115 amad1_13120 amad1_13120 amad1_13120 2944471 2945013 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13120 amad1_13125 amad1_13125 amad1_13125 2945164 2947065 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13125 amad1_13130 amad1_13130 amad1_13130 2947143 2947337 - hypothetical protein gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13130 amad1_13135 amad1_13135 amad1_13135 2947626 2948021 - glutathione S-transferase COG3788 Uncharacterized relative of glutathione S-transferase%2C MAPEG superfamily gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13135 amad1_13140 amad1_13140 amad1_13140 2948171 2948815 - adenylate kinase COG0563 Adenylate kinase and related kinases gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13140 amad1_13145 amad1_13145 amad1_13145 2949164 2951086 - heat shock protein 90 COG0326 Molecular chaperone%2C HSP90 family gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13145 amad1_13150 amad1_13150 amad1_13150 2951299 2951898 - recombination protein RecR COG0353 Recombinational DNA repair protein (RecF pathway) gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13150 amad1_13155 amad1_13155 amad1_13155 2951904 2952851 - hypothetical protein gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13155 amad1_13160 amad1_13160 amad1_13160 2953140 2954021 - bacteriophytochrome protein COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13160 amad1_13165 amad1_13165 amad1_13165 2954461 2954787 - hypothetical protein COG0718 Uncharacterized protein conserved in bacteria gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13165 amad1_13180 amad1_13180 amad1_13180 2957646 2958182 - adenine phosphoribosyltransferase COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13180 amad1_13185 amad1_13185 amad1_13185 2958482 2959246 - ClpB protein COG3219 Uncharacterized protein conserved in bacteria gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13185 amad1_13190 amad1_13190 amad1_13190 2959243 2960094 - hypothetical protein COG3220 Uncharacterized protein conserved in bacteria gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13190 amad1_13195 amad1_13195 amad1_13195 2960246 2960662 - hypothetical protein gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13195 amad1_13200 amad1_13200 amad1_13200 2960894 2964172 + transcriptional regulator COG3710 DNA-binding winged-HTH domains gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13200 amad1_13205 amad1_13205 amad1_13205 2964175 2964540 + hypothetical protein gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13205 amad1_13210 amad1_13210 amad1_13210 2964587 2965555 - sensory box/GGDEF family protein COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13210 amad1_13215 amad1_13215 amad1_13215 2972494 2973291 - CDP-diacylglycerol--serine O-phosphatidyltransferase COG1183 Phosphatidylserine synthase gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13215 amad1_13220 amad1_13220 amad1_13220 2973679 2974617 + hypothetical protein gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13220 amad1_13225 amad1_13225 amad1_13225 2974734 2975744 + hypothetical protein gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13225 amad1_13230 amad1_13230 amad1_13230 2975850 2978663 + hypothetical protein COG0457 FOG: TPR repeat gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13230 amad1_13235 amad1_13235 amad1_13235 2978682 2980385 - D-lactate dehydrogenase COG0277 FAD/FMN-containing dehydrogenases gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13235 amad1_13240 amad1_13240 amad1_13240 2980508 2983084 - ClpB protein COG0542 ATPases with chaperone activity%2C ATP-binding subunit gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13240 amad1_13245 amad1_13245 amad1_13245 2983268 2984023 - hypothetical protein COG1496 Uncharacterized conserved protein gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13245 amad1_13250 amad1_13250 amad1_13250 2984039 2985022 - ribosomal large subunit pseudouridine synthase D COG0564 Pseudouridylate synthases%2C 23S RNA-specific gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13250 amad1_13255 amad1_13255 amad1_13255 2985209 2985973 + Competence lipoprotein ComL COG4105 DNA uptake lipoprotein gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13255 amad1_13260 amad1_13260 amad1_13260 2986110 2986850 - transcription negative regulator ChrR COG3806 Anti-sigma factor gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13260 amad1_13265 amad1_13265 amad1_13265 2986843 2987454 - RNA polymerase sigma factor COG1595 DNA-directed RNA polymerase specialized sigma subunit%2C sigma24 homolog gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13265 amad1_13270 amad1_13270 amad1_13270 2987575 2988090 - hypothetical protein COG2802 Uncharacterized protein%2C similar to the N-terminal domain of Lon protease gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13270 amad1_13275 amad1_13275 amad1_13275 2988409 2988849 + hypothetical protein gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13275 amad1_13280 amad1_13280 amad1_13280 2988846 2989565 + Short chain dehydrogenase family protein COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13280 amad1_13285 amad1_13285 amad1_13285 2989577 2990842 + putative dehydrogenase COG2907 Predicted NAD/FAD-binding protein gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13285 amad1_13290 amad1_13290 amad1_13290 2990839 2991582 + hypothetical protein COG3496 Uncharacterized conserved protein gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13290 amad1_13295 amad1_13295 amad1_13295 2991585 2992841 + cyclopropane-fatty-acyl-phospholipid synthase COG2230 Cyclopropane fatty acid synthase and related methyltransferases gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13295 amad1_13300 amad1_13300 motB motB 2992953 2993882 - flagellar motor protein MotB COG1360 Flagellar motor protein gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13300 amad1_13305 amad1_13305 amad1_13305 2993882 2994643 - flagellar motor protein PomA COG1291 Flagellar motor component gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13305 amad1_13310 amad1_13310 amad1_13310 2994907 2995296 + exodeoxyribonuclease VII small subunit COG1722 Exonuclease VII small subunit gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13310 amad1_13315 amad1_13315 amad1_13315 2995326 2996216 + geranyltranstransferase COG0142 Geranylgeranyl pyrophosphate synthase gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13315 amad1_13320 amad1_13320 amad1_13320 2996249 2998126 + 1-deoxy-D-xylulose-5-phosphate synthase COG1154 Deoxyxylulose-5-phosphate synthase gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13320 amad1_13325 amad1_13325 amad1_13325 2998260 2998760 - phosphatidylglycerophosphatase A COG1267 Phosphatidylglycerophosphatase A and related proteins gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13325 amad1_13330 amad1_13330 amad1_13330 2998800 2999765 - thiamine monophosphate kinase COG0611 Thiamine monophosphate kinase gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13330 amad1_13335 amad1_13335 nusB nusB 2999814 3000236 - transcription antitermination protein NusB COG0781 Transcription termination factor gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13335 amad1_13340 amad1_13340 ribH ribH 3000249 3000722 - 6%2C7-dimethyl-8-ribityllumazine synthase COG0054 Riboflavin synthase beta-chain gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13340 amad1_13345 amad1_13345 amad1_13345 3000967 3002067 - 3%2C4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II COG0108 3%2C4-dihydroxy-2-butanone 4-phosphate synthase gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13345 amad1_13350 amad1_13350 amad1_13350 3002088 3002750 - riboflavin synthase subunit alpha COG0307 Riboflavin synthase alpha chain gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13350 amad1_13355 amad1_13355 amad1_13355 3002771 3003910 - Riboflavin biosynthesis protein RibD COG0117 Pyrimidine deaminase gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13355 amad1_13360 amad1_13360 nrdR nrdR 3003954 3004403 - transcriptional regulator NrdR COG1327 Predicted transcriptional regulator%2C consists of a Zn-ribbon and ATP-cone domains gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13360 amad1_13365 amad1_13365 glyA glyA 3004507 3005763 - serine hydroxymethyltransferase COG0112 Glycine/serine hydroxymethyltransferase gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13365 amad1_13370 amad1_13370 amad1_13370 3005918 3006946 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13370 amad1_13375 amad1_13375 amad1_13375 3007250 3008917 + ABC transporter ATP-binding protein COG0488 ATPase components of ABC transporters with duplicated ATPase domains gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13375 amad1_13380 amad1_13380 amad1_13380 3009081 3009422 + hypothetical protein gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13380 amad1_13385 amad1_13385 amad1_13385 3009553 3010920 - DNA repair protein RadA COG1066 Predicted ATP-dependent serine protease gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13385 amad1_13390 amad1_13390 amad1_13390 3011111 3013636 + type IV pilus assembly PilZ gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13390 amad1_13395 amad1_13395 amad1_13395 3013733 3014716 - SerB protein COG0560 Phosphoserine phosphatase gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13395 amad1_13400 amad1_13400 amad1_13400 3014855 3015550 + hypothetical protein gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13400 amad1_13405 amad1_13405 amad1_13405 3015568 3016410 - putative deoxyribonuclease COG0084 Mg-dependent DNase gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13405 amad1_13410 amad1_13410 amad1_13410 3016482 3017120 - pyridoxine 5-phosphate oxidase COG0259 Pyridoxamine-phosphate oxidase gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13410 amad1_13415 amad1_13415 amad1_13415 3017222 3018133 - GTP-binding protein Era COG1159 GTPase gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13415 amad1_13420 amad1_13420 rnc rnc 3018153 3018839 - ribonuclease III COG0571 dsRNA-specific ribonuclease gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13420 amad1_13425 amad1_13425 amad1_13425 3018839 3019741 - signal peptidase I COG0681 Signal peptidase I gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13425 amad1_13430 amad1_13430 amad1_13430 3019741 3021537 - GTP-binding protein LepA COG0481 Membrane GTPase LepA gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13430 amad1_13435 amad1_13435 amad1_13435 3021736 3022182 - sigma-E factor regulatory protein RseC COG3086 Positive regulator of sigma E activity gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13435 amad1_13440 amad1_13440 amad1_13440 3022194 3023300 - putative anti sigma E (sigma 24) factor COG3026 Negative regulator of sigma E activity gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13440 amad1_13445 amad1_13445 amad1_13445 3023496 3024077 - sigma E factor negative regulatory protein COG3073 Negative regulator of sigma E activity gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13445 amad1_13450 amad1_13450 amad1_13450 3024177 3024755 - RNA polymerase sigma factor RpoE COG1595 DNA-directed RNA polymerase specialized sigma subunit%2C sigma24 homolog gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13450 amad1_13455 amad1_13455 amad1_13455 3024953 3026638 + L-aspartate oxidase COG0029 Aspartate oxidase gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13455 amad1_13460 amad1_13460 amad1_13460 3026712 3027587 - MaoC domain-containing protein dehydratase COG2030 Acyl dehydratase gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13460 amad1_13465 amad1_13465 amad1_13465 3027592 3028077 - hypothetical protein gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13465 amad1_13470 amad1_13470 amad1_13470 3028133 3028384 - TPR repeat protein COG2938 Uncharacterized conserved protein gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13470 amad1_13475 amad1_13475 amad1_13475 3028573 3029616 + glycine cleavage T protein (aminomethyl transferase) COG0354 Predicted aminomethyltransferase related to GcvT gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13475 amad1_13480 amad1_13480 amad1_13480 3029694 3030179 + FKBP-type peptidyl prolyl cis-trans isomerase COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13480 amad1_13485 amad1_13485 amad1_13485 3030279 3030617 - GlnB protein COG0347 Nitrogen regulatory protein PII gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13485 amad1_13490 amad1_13490 nadE nadE 3030620 3031456 - NAD synthetase COG0171 NAD synthase gene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13490 amad1_13495 amad1_13495 amad1_13495 3031899 3032501 + putative type IV pilus biogenesis protein COG4970 Tfp pilus assembly protein FimT gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13495 amad1_13500 amad1_13500 amad1_13500 3032609 3033001 - hypothetical protein COG4968 Tfp pilus assembly protein PilE gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13500 amad1_13505 amad1_13505 amad1_13505 3033080 3033634 + hypothetical protein gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13505 amad1_13510 amad1_13510 amad1_13510 3033628 3034257 + putative prepilin peptidase dependent protein COG4795 Type II secretory pathway%2C component PulJ gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13510 amad1_13515 amad1_13515 amad1_13515 3034247 3035149 + hypothetical protein gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13515 amad1_13520 amad1_13520 amad1_13520 3035136 3035474 + hypothetical protein COG2165 Type II secretory pathway%2C pseudopilin PulG gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13520 amad1_13525 amad1_13525 amad1_13525 3035512 3035976 - general secretion pathway protein H COG4968 Tfp pilus assembly protein PilE gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13525 amad1_13530 amad1_13530 amad1_13530 3035979 3040046 - Tfp pilus assembly protein tip-associated adhesin PilY1-like protein COG3419 Tfp pilus assembly protein%2C tip-associated adhesin PilY1 gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13530 amad1_13535 amad1_13535 amad1_13535 3040055 3040618 - hypothetical protein COG4726 Tfp pilus assembly protein PilX gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13535 amad1_13540 amad1_13540 amad1_13540 3040615 3041475 - pilin like competence factor COG4966 Tfp pilus assembly protein PilW gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13540 amad1_13545 amad1_13545 amad1_13545 3041472 3042122 - hypothetical protein gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13545 amad1_13550 amad1_13550 amad1_13550 3042538 3043482 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase COG0761 Penicillin tolerance protein gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13550 amad1_13555 amad1_13555 amad1_13555 3043485 3043952 - FKBP-type peptidyl-prolyl cis-trans isomerase COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13555 amad1_13560 amad1_13560 amad1_13560 3043967 3044515 - lipoprotein signal peptidase COG0597 Lipoprotein signal peptidase gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13560 amad1_13565 amad1_13565 ileS ileS 3044508 3047327 - isoleucyl-tRNA ligase COG0060 Isoleucyl-tRNA synthetase gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13565 amad1_13570 amad1_13570 amad1_13570 3047564 3048484 - riboflavin biosynthesis protein RibF COG0196 FAD synthase gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13570 amad1_13575 amad1_13575 amad1_13575 3048594 3050153 - MviN protein COG0728 Uncharacterized membrane protein%2C putative virulence factor gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13575 amad1_13580 amad1_13580 amad1_13580 3050627 3050890 + 30S ribosomal subunit protein S20 COG0268 Ribosomal protein S20 gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13580 amad1_13585 amad1_13585 amad1_13585 3051074 3051826 - short chain dehydrogenase COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13585 amad1_13590 amad1_13590 amad1_13590 3051826 3052968 - aminoglycoside phosphotransferase COG3173 Predicted aminoglycoside phosphotransferase gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13590 amad1_13595 amad1_13595 amad1_13595 3053150 3053980 - short chain dehydrogenase COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13595 amad1_13600 amad1_13600 amad1_13600 3054080 3054979 - P3 protein COG0385 Predicted Na+-dependent transporter gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13600 amad1_13605 amad1_13605 amad1_13605 3055089 3055322 + LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13605 amad1_13610 amad1_13610 amad1_13610 3055418 3056215 + metallophosphoesterase COG2908 Uncharacterized protein conserved in bacteria gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13610 amad1_13615 amad1_13615 amad1_13615 3056346 3058103 + acyltransferase family protein COG3176 Putative hemolysin gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13615 amad1_13620 amad1_13620 amad1_13620 3058233 3059405 - succinyl-diaminopimelate desuccinylase COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13620 amad1_13625 amad1_13625 amad1_13625 3059651 3059821 + succinyl-diaminopimelate desuccinylase gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13625 amad1_13630 amad1_13630 amad1_13630 3060011 3061903 - Periplasmic parvulin-like peptidyl-prolyl isomerase COG0760 Parvulin-like peptidyl-prolyl isomerase gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13630 amad1_13635 amad1_13635 amad1_13635 3062214 3062486 - histone-like DNA-binding protein COG0776 Bacterial nucleoid DNA-binding protein gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13635 amad1_13640 amad1_13640 amad1_13640 3062669 3062803 + hypothetical protein gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13640 amad1_13645 amad1_13645 amad1_13645 3062808 3065159 - ATP-dependent protease La COG0466 ATP-dependent Lon protease%2C bacterial type gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13645 amad1_13650 amad1_13650 amad1_13650 3065555 3066829 - ATP-dependent protease ATP-binding subunit ClpX COG1219 ATP-dependent protease Clp%2C ATPase subunit gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13650 amad1_13655 amad1_13655 amad1_13655 3066903 3067532 - ATP-dependent Clp protease proteolytic subunit COG0740 Protease subunit of ATP-dependent Clp proteases gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13655 amad1_13660 amad1_13660 tig tig 3067631 3068935 - trigger factor COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13660 amad1_13665 amad1_13665 amad1_13665 3070693 3071547 + bifunctional 5%2C10-methylene-tetrahydrofolate dehydrogenase/ 5%2C10-methylene-tetrahydrofolate cyclohydrolase COG0190 5%2C10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13665 amad1_13670 amad1_13670 amad1_13670 3071612 3072256 + hypothetical protein COG3310 Uncharacterized protein conserved in bacteria gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13670 amad1_13675 amad1_13675 amad1_13675 3072512 3073231 + hypothetical protein COG1720 Uncharacterized conserved protein gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13675 amad1_13680 amad1_13680 amad1_13680 3073403 3075121 + prolyl-tRNA ligase COG0442 Prolyl-tRNA synthetase gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13680 amad1_13685 amad1_13685 amad1_13685 3075161 3076003 + beta-lactamase-like protein COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13685 amad1_13690 amad1_13690 amad1_13690 3076039 3077058 + Outer membrane phospholipase A COG2829 Outer membrane phospholipase A gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13690 amad1_13695 amad1_13695 amad1_13695 3077150 3078124 - histone deacetylase family protein COG0123 Deacetylases%2C including yeast histone deacetylase and acetoin utilization protein gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13695 amad1_13700 amad1_13700 amad1_13700 3078172 3079794 - Methyl-accepting chemotaxis protein COG0840 Methyl-accepting chemotaxis protein gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13700 amad1_13705 amad1_13705 guaA guaA 3079981 3081558 - GMP synthase COG0518 GMP synthase - Glutamine amidotransferase domain gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13705 amad1_13710 amad1_13710 amad1_13710 3081629 3083098 - inosine 5'-monophosphate dehydrogenase COG0516 IMP dehydrogenase/GMP reductase gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13710 amad1_13715 amad1_13715 amad1_13715 3083187 3084551 + exonuclease VII%2C large subunit COG1570 Exonuclease VII%2C large subunit gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13715 amad1_13720 amad1_13720 amad1_13720 3084567 3085817 + hypothetical protein gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13720 amad1_13725 amad1_13725 amad1_13725 3085872 3086045 - exodeoxyribonuclease VII large subunit gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13725 amad1_13730 amad1_13730 amad1_13730 3086525 3087970 - GTP-binding protein Der COG1160 Predicted GTPases gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13730 amad1_13735 amad1_13735 amad1_13735 3088280 3089539 - outer membrane biogenesis protein BamB COG1520 FOG: WD40-like repeat gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13735 amad1_13740 amad1_13740 amad1_13740 3089584 3090204 - putative membrane-associated protein COG2976 Uncharacterized protein conserved in bacteria gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13740 amad1_13745 amad1_13745 hisS hisS 3090217 3091500 - histidyl-tRNA ligase COG0124 Histidyl-tRNA synthetase gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13745 amad1_13750 amad1_13750 amad1_13750 3091584 3092702 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13750 amad1_13755 amad1_13755 amad1_13755 3092711 3093763 - hypothetical protein COG1426 Uncharacterized protein conserved in bacteria gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13755 amad1_13760 amad1_13760 amad1_13760 3093770 3094963 - ATP-dependent protease La COG3063 Tfp pilus assembly protein PilF gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13760 amad1_13765 amad1_13765 amad1_13765 3094988 3096106 - ribosomal RNA large subunit methyltransferase N COG0820 Predicted Fe-S-cluster redox enzyme gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13765 amad1_13770 amad1_13770 amad1_13770 3096519 3096950 - mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase COG0105 Nucleoside diphosphate kinase gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13770 amad1_13775 amad1_13775 amad1_13775 3097230 3097640 - cysteine desulfurase SufE subunit COG2166 SufE protein probably involved in Fe-S center assembly gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13775 amad1_13780 amad1_13780 amad1_13780 3097708 3098241 - metal-sulfur cluster protein COG2151 Predicted metal-sulfur cluster biosynthetic enzyme gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13780 amad1_13785 amad1_13785 amad1_13785 3098293 3098649 - Fe-S cluster assembly scaffold protein COG0316 Uncharacterized conserved protein gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13785 amad1_13790 amad1_13790 amad1_13790 3098659 3099876 - Selenocysteine lyase/Cysteine desulfurase COG0520 Selenocysteine lyase gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13790 amad1_13795 amad1_13795 amad1_13795 3099873 3101129 - cysteine desulfurase activator SufB COG0719 ABC-type transport system involved in Fe-S cluster assembly%2C permease component gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13795 amad1_13800 amad1_13800 amad1_13800 3101126 3101887 - cysteine desulfurase activator ATPase COG0396 ABC-type transport system involved in Fe-S cluster assembly%2C ATPase component gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13800 amad1_13805 amad1_13805 amad1_13805 3101891 3103327 - cysteine desulfurase activator complex subunit SufB COG0719 ABC-type transport system involved in Fe-S cluster assembly%2C permease component gene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13805 amad1_13810 amad1_13810 amad1_13810 3103672 3104838 - cysteine desulfurase COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13810 amad1_13815 amad1_13815 amad1_13815 3104857 3105342 - BadM/Rrf2 family transcriptional regulator COG1959 Predicted transcriptional regulator gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13815 amad1_13820 amad1_13820 amad1_13820 3105488 3106963 - putative aromatic-ring hydroxylase COG2072 Predicted flavoprotein involved in K+ transport gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13820 amad1_13825 amad1_13825 amad1_13825 3107085 3107909 - serine O-acetyltransferase COG1045 Serine acetyltransferase gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13825 amad1_13830 amad1_13830 amad1_13830 3107915 3108700 - putative tRNA/rRNA methyltransferase COG0565 rRNA methylase gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13830 amad1_13835 amad1_13835 amad1_13835 3109092 3109868 + inositol-1-monophosphatase COG0483 Archaeal fructose-1%2C6-bisphosphatase and related enzymes of inositol monophosphatase family gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13835 amad1_13840 amad1_13840 amad1_13840 3110060 3111277 - hypothetical protein gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13840 amad1_13845 amad1_13845 amad1_13845 3111413 3112297 + regulatory protein COG3279 Response regulator of the LytR/AlgR family gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13845 amad1_13850 amad1_13850 amad1_13850 3112409 3113350 - protein-export membrane protein SecF COG0341 Preprotein translocase subunit SecF gene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13850 amad1_13855 amad1_13855 secD secD 3113361 3115205 - preprotein translocase subunit SecD COG0342 Preprotein translocase subunit SecD gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13855 amad1_13860 amad1_13860 yajC yajC 3115261 3115599 - preprotein translocase subunit YajC COG1862 Preprotein translocase subunit YajC gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13860 amad1_13865 amad1_13865 amad1_13865 3115624 3116736 - queuine tRNA-ribosyltransferase COG0343 Queuine/archaeosine tRNA-ribosyltransferase gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13865 amad1_13870 amad1_13870 amad1_13870 3117036 3118082 - S-adenosylmethionine--tRNA ribosyltransferase-isomerase COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) gene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13870 amad1_13875 amad1_13875 amad1_13875 3118494 3118928 - GMP synthase%2C PP-ATPase domain/subunit i gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13875 amad1_13880 amad1_13880 amad1_13880 3119032 3119421 + hypothetical protein COG3789 Uncharacterized protein conserved in bacteria gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13880 amad1_13885 amad1_13885 amad1_13885 3119445 3120125 + phage shock protein A (IM30)%2C suppresses sigma54-dependent transcription COG1842 Phage shock protein A (IM30)%2C suppresses sigma54-dependent transcription gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13885 amad1_13890 amad1_13890 amad1_13890 3120303 3121328 + Kef-type K+ transport system NAD-binding subunit COG1226 Kef-type K+ transport systems%2C predicted NAD-binding component gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13890 amad1_13895 amad1_13895 amad1_13895 3121341 3121985 + hypothetical protein gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13895 amad1_13900 amad1_13900 amad1_13900 3122002 3122418 + hypothetical protein COG3766 Predicted membrane protein gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13900 amad1_13905 amad1_13905 amad1_13905 3122429 3123097 + hypothetical protein COG5463 Predicted integral membrane protein gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13905 amad1_13910 amad1_13910 amad1_13910 3123100 3124266 + putative glutathionylspermidine synthase COG0754 Glutathionylspermidine synthase gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13910 amad1_13915 amad1_13915 amad1_13915 3124287 3124826 + Rhomboid-like protein COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13915 amad1_13920 amad1_13920 amad1_13920 3124873 3125574 + Dihydroorotate dehydrogenase 2 gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13920 amad1_13925 amad1_13925 amad1_13925 3125751 3126443 + ABC transporter nucleotide binding/ATPase protein COG1136 ABC-type antimicrobial peptide transport system%2C ATPase component gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13925 amad1_13930 amad1_13930 amad1_13930 3126499 3129288 + hypothetical protein COG0577 ABC-type antimicrobial peptide transport system%2C permease component gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13930 amad1_13935 amad1_13935 amad1_13935 3129285 3130637 + secreted hydrolase COG5621 Predicted secreted hydrolase gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13935 amad1_13940 amad1_13940 amad1_13940 3130686 3131594 - glutaminase COG2066 Glutaminase gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13940 amad1_13945 amad1_13945 amad1_13945 3131755 3133221 - alkaline phosphatase COG1785 Alkaline phosphatase gene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13945 amad1_13950 amad1_13950 amad1_13950 3133446 3134405 - chemotaxis protein CheV COG0835 Chemotaxis signal transduction protein gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13950 amad1_13955 amad1_13955 amad1_13955 3134765 3136360 + isocitrate lyase COG2224 Isocitrate lyase gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13955 amad1_13960 amad1_13960 amad1_13960 3136643 3137587 + LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13960 amad1_13965 amad1_13965 amad1_13965 3137686 3139881 + malate synthase G COG2225 Malate synthase gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13965 amad1_13970 amad1_13970 amad1_13970 3140193 3141086 + patatin COG1752 Predicted esterase of the alpha-beta hydrolase superfamily gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13970 amad1_13975 amad1_13975 amad1_13975 3141109 3142125 - capsular polysaccharide biosynthesis protein I COG0451 Nucleoside-diphosphate-sugar epimerases gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13975 amad1_13980 amad1_13980 amad1_13980 3142143 3143240 - hypothetical protein gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13980 amad1_13985 amad1_13985 amad1_13985 3143230 3144009 - HPr kinase gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13985 amad1_13990 amad1_13990 amad1_13990 3144307 3144927 - hypothetical protein gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13990 amad1_13995 amad1_13995 amad1_13995 3145173 3146825 + FAD-binding protein COG0277 FAD/FMN-containing dehydrogenases gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_13995 amad1_14000 amad1_14000 amad1_14000 3146822 3147607 - serine protease COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C contain C-terminal PDZ domain gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14000 amad1_14005 amad1_14005 amad1_14005 3147790 3148620 + hypothetical protein COG3176 Putative hemolysin gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14005 amad1_14010 amad1_14010 amad1_14010 3148945 3149967 - hypothetical protein gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14010 amad1_14015 amad1_14015 amad1_14015 3150109 3152808 - hypothetical protein COG0457 FOG: TPR repeat gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14015 amad1_14020 amad1_14020 amad1_14020 3152840 3153913 - group 1 glycosyl transferase COG0438 Glycosyltransferase gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14020 amad1_14025 amad1_14025 amad1_14025 3153998 3155110 + protein involved in cellulose biosynthesis (CelD)-like protein gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14025 amad1_14030 amad1_14030 amad1_14030 3155100 3156158 - hypothetical protein COG3146 Uncharacterized protein conserved in bacteria gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14030 amad1_14035 amad1_14035 amad1_14035 3156151 3157179 - hypothetical protein gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14035 amad1_14040 amad1_14040 amad1_14040 3157207 3158457 - UDP-N-acetyl-D-mannosamine 6-dehydrogenase COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14040 amad1_14045 amad1_14045 amad1_14045 3158463 3159584 - UDP-N-acetylglucosamine 2-epimerase COG0381 UDP-N-acetylglucosamine 2-epimerase gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14045 amad1_14050 amad1_14050 amad1_14050 3159801 3160757 + polysaccharide deacetylase COG0726 Predicted xylanase/chitin deacetylase gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14050 amad1_14055 amad1_14055 amad1_14055 3160750 3161973 + hypothetical protein COG0438 Glycosyltransferase gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14055 amad1_14060 amad1_14060 amad1_14060 3162095 3164710 + hypothetical protein gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14060 amad1_14065 amad1_14065 amad1_14065 3165100 3165639 - hypothetical protein gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14065 amad1_14070 amad1_14070 amad1_14070 3165933 3167114 - group 1 glycosyl transferase COG0438 Glycosyltransferase gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14070 amad1_14075 amad1_14075 amad1_14075 3167427 3169154 - acyltransferase 3 COG1835 Predicted acyltransferases gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14075 amad1_14080 amad1_14080 amad1_14080 3169160 3171040 - asparagine synthase COG0367 Asparagine synthase (glutamine-hydrolyzing) gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14080 amad1_14085 amad1_14085 amad1_14085 3171043 3172182 - group 1 glycosyl transferase COG0438 Glycosyltransferase gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14085 amad1_14090 amad1_14090 amad1_14090 3172172 3173056 - ExoV-like protein gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14090 amad1_14095 amad1_14095 amad1_14095 3173080 3174555 - polysaccharide biosynthesis protein COG2244 Membrane protein involved in the export of O-antigen and teichoic acid gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14095 amad1_14100 amad1_14100 amad1_14100 3174652 3174981 - hypothetical protein gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14100 amad1_14105 amad1_14105 amad1_14105 3174971 3176563 - choline dehydrogenase-like flavoprotein COG2303 Choline dehydrogenase and related flavoproteins gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14105 amad1_14110 amad1_14110 amad1_14110 3176553 3177848 - O-antigen polymerase COG3307 Lipid A core - O-antigen ligase and related enzymes gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14110 amad1_14115 amad1_14115 amad1_14115 3177865 3178260 - hypothetical protein gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14115 amad1_14120 amad1_14120 amad1_14120 3178244 3179389 - group 1 glycosyl transferase COG0438 Glycosyltransferase gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14120 amad1_14125 amad1_14125 amad1_14125 3179367 3181292 - asparagine synthase COG0367 Asparagine synthase (glutamine-hydrolyzing) gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14125 amad1_14130 amad1_14130 amad1_14130 3181298 3182107 - family 2 glycosyl transferase COG1216 Predicted glycosyltransferases gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14130 amad1_14135 amad1_14135 amad1_14135 3182112 3183602 - exosortase gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14135 amad1_14140 amad1_14140 amad1_14140 3183583 3184419 - polysaccharide deacetylase COG0726 Predicted xylanase/chitin deacetylase gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14140 amad1_14145 amad1_14145 amad1_14145 3184422 3185834 - sugar transferase domain-containing protein COG2148 Sugar transferases involved in lipopolysaccharide synthesis gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14145 amad1_14150 amad1_14150 amad1_14150 3185984 3186616 + polysaccharide biosynthesis/export protein COG1596 Periplasmic protein involved in polysaccharide export gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14150 amad1_14155 amad1_14155 amad1_14155 3186648 3188216 + lipopolysaccharide biosynthesis protein COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14155 amad1_14160 amad1_14160 amad1_14160 3188216 3189166 + putative exopolysaccharide biosynthesis protein COG0489 ATPases involved in chromosome partitioning gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14160 amad1_14165 amad1_14165 amad1_14165 3189135 3190808 + hypothetical protein gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14165 amad1_14170 amad1_14170 amad1_14170 3190962 3192026 - putative general secretion pathway protein A COG3267 Type II secretory pathway%2C component ExeA (predicted ATPase) gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14170 amad1_14185 amad1_14185 amad1_14185 3193638 3193985 + URI domain endonuclease COG2827 Predicted endonuclease containing a URI domain gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14185 amad1_14190 amad1_14190 amad1_14190 3193990 3194895 - putative ATP synthase F0 subunit A gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14190 amad1_14195 amad1_14195 amad1_14195 3194928 3195101 + hypothetical protein gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14195 amad1_14200 amad1_14200 amad1_14200 3195188 3198148 + bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase COG1391 Glutamine synthetase adenylyltransferase gene gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14200 amad1_14205 amad1_14205 amad1_14205 3198268 3198552 + hypothetical protein COG2801 Transposase and inactivated derivatives gene gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14205 amad1_14210 amad1_14210 amad1_14210 3198552 3198887 + transposase-like protein COG3436 Transposase and inactivated derivatives gene gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14210 amad1_14215 amad1_14215 amad1_14215 3198911 3200476 + transposase COG3436 Transposase and inactivated derivatives gene gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14215 amad1_14220 amad1_14220 amad1_14220 3200448 3200843 + hypothetical protein gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14220 amad1_14225 amad1_14225 amad1_14225 3201006 3201623 - hypothetical protein gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14225 amad1_14230 amad1_14230 amad1_14230 3201802 3202737 - lipid A biosynthesis lauroyl acyltransferase COG1560 Lauroyl/myristoyl acyltransferase gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14230 amad1_14235 amad1_14235 amad1_14235 3202920 3203177 - hypothetical protein gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14235 amad1_14240 amad1_14240 amad1_14240 3203395 3203955 - hypothetical protein COG1854 LuxS protein involved in autoinducer AI2 synthesis gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14240 amad1_14245 amad1_14245 amad1_14245 3204271 3206520 + acyl-CoA dehydrogenase COG1960 Acyl-CoA dehydrogenases gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14245 amad1_14250 amad1_14250 amad1_14250 3206671 3207402 + hypothetical protein gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14250 amad1_14255 amad1_14255 amad1_14255 3207491 3210001 - TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14255 amad1_14260 amad1_14260 amad1_14260 3210425 3212476 + GGDEF/EAL domain-containing protein COG5001 Predicted signal transduction protein containing a membrane domain%2C an EAL and a GGDEF domain gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14260 amad1_14265 amad1_14265 amad1_14265 3212482 3213063 + thymidine kinase COG1435 Thymidine kinase gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14265 amad1_14270 amad1_14270 amad1_14270 3213366 3216269 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14270 amad1_14275 amad1_14275 amad1_14275 3216503 3217528 - transcriptional regulator COG1609 Transcriptional regulators gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14275 amad1_14280 amad1_14280 amad1_14280 3217709 3218338 - uracil phosphoribosyltransferase COG0035 Uracil phosphoribosyltransferase gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14280 amad1_14285 amad1_14285 amad1_14285 3218450 3218671 - helix-turn-helix domain-containing protein COG1396 Predicted transcriptional regulators gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14285 amad1_14290 amad1_14290 amad1_14290 3219063 3219605 - hypothetical protein gene gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14290 amad1_14295 amad1_14295 amad1_14295 3219715 3220620 - hypothetical protein gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14295 amad1_14300 amad1_14300 amad1_14300 3220632 3221981 - kelch domain protein gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14300 amad1_14305 amad1_14305 amad1_14305 3222014 3222904 - kelch domain protein gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14305 amad1_14310 amad1_14310 amad1_14310 3223038 3224036 - ribosomal biogenesis GTPase COG1161 Predicted GTPases gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14310 amad1_14315 amad1_14315 amad1_14315 3224075 3224971 - rRNA methylase COG0566 rRNA methylases gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14315 amad1_14320 amad1_14320 amad1_14320 3225152 3225808 + enoyl-CoA hydratase/carnithine racemase COG1024 Enoyl-CoA hydratase/carnithine racemase gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14320 amad1_14325 amad1_14325 amad1_14325 3225933 3226448 - hypothetical protein COG4539 Predicted membrane protein gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14325 amad1_14330 amad1_14330 amad1_14330 3226600 3227424 + hypothetical protein COG3187 Heat shock protein gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14330 amad1_14335 amad1_14335 amad1_14335 3228087 3229553 + betaine aldehyde dehydrogenase COG1012 NAD-dependent aldehyde dehydrogenases gene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14335 amad1_14340 amad1_14340 amad1_14340 3229575 3231227 + choline dehydrogenase COG2303 Choline dehydrogenase and related flavoproteins gene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14340 amad1_14345 amad1_14345 amad1_14345 3231393 3232610 + quaternary ammonium permease COG1292 Choline-glycine betaine transporter gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14345 amad1_14350 amad1_14350 amad1_14350 3232753 3233475 + periplasmic or outer membrane protein gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14350 amad1_14355 amad1_14355 amad1_14355 3233607 3234581 - 23S rRNA mA1618 methyltransferase COG3129 Predicted SAM-dependent methyltransferase gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14355 amad1_14360 amad1_14360 amad1_14360 3234880 3236235 + Xaa-Pro aminopeptidase family protein COG0006 Xaa-Pro aminopeptidase gene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14360 amad1_14365 amad1_14365 amad1_14365 3236416 3236883 - hypothetical protein gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14365 amad1_14370 amad1_14370 amad1_14370 3237240 3238379 - hypothetical protein gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14370 amad1_14375 amad1_14375 amad1_14375 3238402 3239202 - PaaX-like protein gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14375 amad1_14380 amad1_14380 amad1_14380 3239365 3241047 + acyl-CoA dehydrogenase COG1960 Acyl-CoA dehydrogenases gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14380 amad1_14385 amad1_14385 amad1_14385 3241279 3241671 + hypothetical protein COG0737 5'-nucleotidase/2'%2C3'-cyclic phosphodiesterase and related esterases gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14385 amad1_14390 amad1_14390 amad1_14390 3241671 3242354 + hypothetical protein gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14390 amad1_14395 amad1_14395 amad1_14395 3242500 3242847 - hypothetical protein gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14395 amad1_14400 amad1_14400 amad1_14400 3243005 3243607 + hypothetical protein gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14400 amad1_14405 amad1_14405 amad1_14405 3243765 3244100 - hypothetical protein gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14405 amad1_14410 amad1_14410 amad1_14410 3244382 3245092 + transcriptional regulatory protein CpxR COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14410 amad1_14415 amad1_14415 amad1_14415 3245106 3246473 + sensor histidine kinase COG0642 Signal transduction histidine kinase gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14415 amad1_14420 amad1_14420 amad1_14420 3246569 3248554 + adenylate cyclase COG3072 Adenylate cyclase gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14420 amad1_14425 amad1_14425 amad1_14425 3248677 3249069 + BlaI family transcriptional regulator COG3682 Predicted transcriptional regulator gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14425 amad1_14430 amad1_14430 amad1_14430 3249062 3250219 + TonB-like protein COG4219 Antirepressor regulating drug resistance%2C predicted signal transduction N-terminal membrane component gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14430 amad1_14435 amad1_14435 amad1_14435 3250560 3251153 + hypothetical protein gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14435 amad1_14440 amad1_14440 amad1_14440 3251248 3254736 + hypothetical protein COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14440 amad1_14445 amad1_14445 amad1_14445 3254908 3255456 - lactoylglutathione lyase COG0346 Lactoylglutathione lyase and related lyases gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14445 amad1_14450 amad1_14450 amad1_14450 3255612 3256292 - hypothetical protein COG4807 Uncharacterized protein conserved in bacteria gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14450 amad1_14455 amad1_14455 amad1_14455 3256526 3257023 + putative oxidoreductase COG2080 Aerobic-type carbon monoxide dehydrogenase%2C small subunit CoxS/CutS homologs gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14455 amad1_14460 amad1_14460 amad1_14460 3257023 3258048 + putative oxidoreductase subunit COG1319 Aerobic-type carbon monoxide dehydrogenase%2C middle subunit CoxM/CutM homologs gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14460 amad1_14465 amad1_14465 amad1_14465 3258035 3260260 + xanthine dehydrogenase COG1529 Aerobic-type carbon monoxide dehydrogenase%2C large subunit CoxL/CutL homologs gene gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14465 amad1_14470 amad1_14470 amad1_14470 3260415 3260954 + hypothetical protein COG3182 Uncharacterized iron-regulated membrane protein gene gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14470 amad1_14475 amad1_14475 amad1_14475 3260958 3262997 - heme transport protein HutA COG4771 Outer membrane receptor for ferrienterochelin and colicins gene gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14475 amad1_14480 amad1_14480 amad1_14480 3263150 3266404 - BNR/Asp-box repeat-containing protein gene gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14480 amad1_14485 amad1_14485 amad1_14485 3266666 3267553 - short-chain dehydrogenase/oxidoreductase COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14485 amad1_14490 amad1_14490 amad1_14490 3267872 3268564 - short-chain alcohol dehydrogenase COG4221 Short-chain alcohol dehydrogenase of unknown specificity gene gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14490 amad1_14495 amad1_14495 amad1_14495 3268719 3269270 - protease COG0693 Putative intracellular protease/amidase gene gene2932 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14495 amad1_14500 amad1_14500 amad1_14500 3269641 3270594 + putative ribonuclease protein COG1295 Predicted membrane protein gene gene2933 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14500 amad1_14505 amad1_14505 amad1_14505 3270745 3270948 + hypothetical protein gene gene2934 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14505 amad1_14510 amad1_14510 amad1_14510 3271243 3271791 + YaeQ protein COG4681 Uncharacterized protein conserved in bacteria gene gene2935 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14510 amad1_14515 amad1_14515 amad1_14515 3271791 3272099 + hypothetical protein gene gene2936 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14515 amad1_14520 amad1_14520 amad1_14520 3272298 3272675 + Late embryogenesis abundant protein gene gene2937 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14520 amad1_14525 amad1_14525 amad1_14525 3272758 3273228 - hypothetical protein gene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14525 amad1_14530 amad1_14530 amad1_14530 3273548 3273916 + hypothetical protein gene gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14530 amad1_14535 amad1_14535 amad1_14535 3274088 3274762 + nitroreductase family protein COG0778 Nitroreductase gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14535 amad1_14540 amad1_14540 amad1_14540 3274940 3276109 + major facilitator family protein COG0477 Permeases of the major facilitator superfamily gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14540 amad1_14545 amad1_14545 amad1_14545 3276298 3277422 - NADH oxidoreductase COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14545 amad1_14550 amad1_14550 amad1_14550 3277647 3278192 + putative secreted protein gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14550 amad1_14555 amad1_14555 amad1_14555 3278339 3280378 + RecQ domain-containing protein COG0514 Superfamily II DNA helicase gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14555 amad1_14560 amad1_14560 amad1_14560 3280549 3280989 - hypothetical protein gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14560 amad1_14565 amad1_14565 amad1_14565 3281166 3281993 + putative methylase COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14565 amad1_14570 amad1_14570 amad1_14570 3282010 3282213 + hypothetical protein gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14570 amad1_14575 amad1_14575 amad1_14575 3282231 3285443 + sensory box histidine kinase/response regulator COG0642 Signal transduction histidine kinase gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14575 amad1_14580 amad1_14580 amad1_14580 3285506 3285958 - hypothetical protein gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14580 amad1_14585 amad1_14585 amad1_14585 3286079 3288733 - histidine kinase A COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14585 amad1_14590 amad1_14590 amad1_14590 3288824 3290008 - dehydrogenase COG2133 Glucose/sorbosone dehydrogenases gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14590 amad1_14595 amad1_14595 amad1_14595 3290473 3290625 - helix-turn-helix protein%2C CopG gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14595 amad1_14600 amad1_14600 amad1_14600 3290917 3293301 + TonB-dependent receptor plug COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14600 amad1_14605 amad1_14605 amad1_14605 3293316 3294017 + Two-component system regulatory protein COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14605 amad1_14610 amad1_14610 amad1_14610 3294017 3295252 + periplasmic sensor signal transduction histidine kinase COG0642 Signal transduction histidine kinase gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14610 amad1_14615 amad1_14615 amad1_14615 3295362 3295586 - HipA protein gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14615 amad1_14620 amad1_14620 amad1_14620 3295580 3295903 - transcriptional regulator COG1396 Predicted transcriptional regulators gene gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14620 amad1_14625 amad1_14625 amad1_14625 3296497 3296634 + quinol oxidase subunit II COG1294 Cytochrome bd-type quinol oxidase%2C subunit 2 gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14625 amad1_14630 amad1_14630 amad1_14630 3296838 3298190 - glutamate dehydrogenase COG0334 Glutamate dehydrogenase/leucine dehydrogenase gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14630 amad1_14635 amad1_14635 amad1_14635 3298216 3298557 - GreA/GreB family elongation factor COG0782 Transcription elongation factor gene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14635 amad1_14640 amad1_14640 amad1_14640 3298523 3300565 - PKD domain-containing protein COG3979 Uncharacterized protein contain chitin-binding domain type 3 gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14640 amad1_14645 amad1_14645 amad1_14645 3300825 3301001 + carbon storage regulator CsrA COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing) gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14645 amad1_14650 amad1_14650 amad1_14650 3301193 3302134 + hypothetical protein COG0330 Membrane protease subunits%2C stomatin/prohibitin homologs gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14650 amad1_14655 amad1_14655 amad1_14655 3302139 3302579 + hypothetical protein gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14655 amad1_14660 amad1_14660 amad1_14660 3302676 3303122 - hypothetical protein gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14660 amad1_14665 amad1_14665 amad1_14665 3303325 3305166 + plasmid-like protein gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14665 amad1_14670 amad1_14670 amad1_14670 3305176 3306213 + ATPase COG0714 MoxR-like ATPases gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14670 amad1_14675 amad1_14675 amad1_14675 3306240 3306677 + hypothetical protein gene gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14675 amad1_14680 amad1_14680 amad1_14680 3306856 3307695 + hypothetical protein gene gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14680 amad1_14685 amad1_14685 amad1_14685 3307994 3309271 + hypothetical protein gene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14685 amad1_14690 amad1_14690 amad1_14690 3309268 3309780 + hypothetical protein gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14690 amad1_14695 amad1_14695 amad1_14695 3309866 3311305 - mercuric reductase COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14695 amad1_14700 amad1_14700 amad1_14700 3311309 3311587 - Mercury scavenger protein:Heavy-metal-associated domain-containing protein COG2608 Copper chaperone gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14700 amad1_14705 amad1_14705 amad1_14705 3311638 3311985 - mercuric transporter MerT gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14705 amad1_14710 amad1_14710 amad1_14710 3312109 3312498 - Hg(II)-responsive transcriptional regulator COG0789 Predicted transcriptional regulators gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14710 amad1_14715 amad1_14715 amad1_14715 3312591 3313829 - phage integrase family protein site-specific recombinase COG0582 Integrase gene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14715 amad1_14720 amad1_14720 amad1_14720 3313986 3314690 + putative DNA-binding protein COG2207 AraC-type DNA-binding domain-containing proteins gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14720 amad1_14725 amad1_14725 amad1_14725 3314784 3316148 + beta-lactamase domain-containing protein COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14725 amad1_14730 amad1_14730 amad1_14730 3316148 3316861 + hypothetical protein COG1305 Transglutaminase-like enzymes%2C putative cysteine proteases gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14730 amad1_14735 amad1_14735 amad1_14735 3316871 3317095 + hypothetical protein gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14735 amad1_14740 amad1_14740 amad1_14740 3317260 3317382 - putative RND efflux system protein COG3696 Putative silver efflux pump gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14740 amad1_14745 amad1_14745 amad1_14745 3317718 3319787 - outer membrane iron(III) dicitrate receptor COG4772 Outer membrane receptor for Fe3+-dicitrate gene gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14745 amad1_14750 amad1_14750 amad1_14750 3320353 3323562 - Heavy metal efflux pump CzcA COG3696 Putative silver efflux pump gene gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14750 amad1_14755 amad1_14755 amad1_14755 3323578 3324885 - Secretion protein HlyD COG0845 Membrane-fusion protein gene gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14755 amad1_14760 amad1_14760 amad1_14760 3324890 3326254 - outer membrane protein%2C probably efflux family COG1538 Outer membrane protein gene gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14760 amad1_14765 amad1_14765 amad1_14765 3326324 3326701 - hypothetical protein gene gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14765 amad1_14770 amad1_14770 amad1_14770 3326724 3327539 - Co/Zn/Cd efflux system protein COG1230 Co/Zn/Cd efflux system component gene gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14770 amad1_14775 amad1_14775 amad1_14775 3327619 3327990 - hypothetical protein gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14775 amad1_14780 amad1_14780 amad1_14780 3327993 3328340 - cation efflux protein COG1230 Co/Zn/Cd efflux system component gene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14780 amad1_14785 amad1_14785 amad1_14785 3328895 3331036 + molybdopterin oxidoreductase COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing gene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14785 amad1_14790 amad1_14790 amad1_14790 3331410 3332912 - putative transposase COG3436 Transposase and inactivated derivatives gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14790 amad1_14795 amad1_14795 amad1_14795 3332999 3333349 - hypothetical protein COG3436 Transposase and inactivated derivatives gene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14795 amad1_14800 amad1_14800 amad1_14800 3333346 3333666 - hypothetical protein gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14800 amad1_14805 amad1_14805 amad1_14805 3334341 3335531 - bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 COG1017 Hemoglobin-like flavoprotein gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14805 amad1_14810 amad1_14810 amad1_14810 3335729 3337309 + anaerobic nitric oxide reductase transcription regulator COG3604 Transcriptional regulator containing GAF%2C AAA-type ATPase%2C and DNA binding domains gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14810 amad1_14815 amad1_14815 amad1_14815 3337377 3338282 + hypothetical protein COG3448 CBS-domain-containing membrane protein gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14815 amad1_14820 amad1_14820 amad1_14820 3338324 3338530 - integrase catalytic subunit COG2801 Transposase and inactivated derivatives gene gene2997 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14820 amad1_14825 amad1_14825 amad1_14825 3338906 3341815 - glycine dehydrogenase COG0403 Glycine cleavage system protein P (pyridoxal-binding)%2C N-terminal domain gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14825 amad1_14830 amad1_14830 amad1_14830 3341937 3342326 - glycine cleavage system protein H COG0509 Glycine cleavage system H protein (lipoate-binding) gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14830 amad1_14835 amad1_14835 gcvT gcvT 3342366 3343445 - glycine cleavage system aminomethyltransferase T COG0404 Glycine cleavage system T protein (aminomethyltransferase) gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14835 amad1_14840 amad1_14840 amad1_14840 3343811 3344950 - N-acetylglucosamine-6-phosphate deacetylase COG1820 N-acetylglucosamine-6-phosphate deacetylase gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14840 amad1_14845 amad1_14845 amad1_14845 3345066 3345986 - BadF/BadG/BcrA/BcrD type ATPase COG2971 Predicted N-acetylglucosamine kinase gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14845 amad1_14850 amad1_14850 amad1_14850 3346185 3347033 + LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14850 amad1_14855 amad1_14855 amad1_14855 3347368 3349002 + putative L-lactate permease%2C LctP COG1620 L-lactate permease gene gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14855 amad1_14860 amad1_14860 amad1_14860 3349079 3350011 - exopolyphosphatase-like protein COG0618 Exopolyphosphatase-related proteins gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14860 amad1_14865 amad1_14865 amad1_14865 3350241 3351548 - putative metal-dependent dipeptidase COG0006 Xaa-Pro aminopeptidase gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14865 amad1_14870 amad1_14870 amad1_14870 3351648 3352523 - hypothetical protein COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14870 amad1_14875 amad1_14875 amad1_14875 3352576 3352686 - hypothetical protein gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14875 amad1_14880 amad1_14880 amad1_14880 3352740 3353912 - 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14880 amad1_14885 amad1_14885 amad1_14885 3353899 3355242 - 2-octaprenyl-6-methoxyphenyl hydroxylase COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14885 amad1_14890 amad1_14890 amad1_14890 3355418 3356731 - proline aminopeptidase P II COG0006 Xaa-Pro aminopeptidase gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14890 amad1_14895 amad1_14895 amad1_14895 3356786 3357352 - yecA family protein COG3079 Uncharacterized protein conserved in bacteria gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14895 amad1_14900 amad1_14900 amad1_14900 3358068 3358964 + Sugar kinase%2C ribokinase family protein COG0524 Sugar kinases%2C ribokinase family gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14900 amad1_14905 amad1_14905 amad1_14905 3358988 3359929 + Inosine-uridine nucleoside N-ribohydrolase COG1957 Inosine-uridine nucleoside N-ribohydrolase gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14905 amad1_14910 amad1_14910 amad1_14910 3359991 3361619 + histidine kinase response regulator hybrid protein COG2203 FOG: GAF domain gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14910 amad1_14915 amad1_14915 amad1_14915 3361653 3362342 + 5-formyltetrahydrofolate cyclo-ligase COG0212 5-formyltetrahydrofolate cyclo-ligase gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14915 amad1_14920 amad1_14920 amad1_14920 3362429 3363085 + ribose-5-phosphate isomerase A COG0120 Ribose 5-phosphate isomerase gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14920 amad1_14925 amad1_14925 amad1_14925 3363331 3364560 + D-3-phosphoglycerate dehydrogenase COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14925 amad1_14930 amad1_14930 amad1_14930 3364707 3365453 - hypothetical protein COG3137 Putative salt-induced outer membrane protein gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14930 amad1_14935 amad1_14935 amad1_14935 3365668 3366471 - putative salt-induced outer membrane protein COG3137 Putative salt-induced outer membrane protein gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14935 amad1_14940 amad1_14940 amad1_14940 3366607 3367431 - hypothetical protein COG1639 Predicted signal transduction protein gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14940 amad1_14945 amad1_14945 amad1_14945 3367452 3367748 - Fe-S protein-like protein EB3 COG3313 Predicted Fe-S protein gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14945 amad1_14950 amad1_14950 amad1_14950 3367952 3368662 - hypothetical protein COG2859 Uncharacterized protein conserved in bacteria gene gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14950 amad1_14955 amad1_14955 amad1_14955 3368840 3371962 - RND multidrug efflux transporter MexF COG0841 Cation/multidrug efflux pump gene gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14955 amad1_14960 amad1_14960 amad1_14960 3371962 3373248 - Membrane-fusion protein COG0845 Membrane-fusion protein gene gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14960 amad1_14965 amad1_14965 amad1_14965 3373685 3374755 + transcriptional regulator COG0583 Transcriptional regulator gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14965 amad1_14970 amad1_14970 amad1_14970 3374752 3374919 - dihydrolipoamide dehydrogenase gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14970 amad1_14975 amad1_14975 amad1_14975 3374993 3375190 - hypothetical protein gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14975 amad1_14980 amad1_14980 amad1_14980 3375316 3376737 - dihydrolipoamide dehydrogenase COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14980 amad1_14985 amad1_14985 amad1_14985 3376870 3378924 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide acyltransferase (E2) component%2C and related enzymes gene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14985 amad1_14990 amad1_14990 aceE aceE 3378946 3381621 - pyruvate dehydrogenase subunit E1 COG2609 Pyruvate dehydrogenase complex%2C dehydrogenase (E1) component gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14990 amad1_14995 amad1_14995 amad1_14995 3381832 3382578 - pyruvate dehydrogenase complex transcriptional regulator COG2186 Transcriptional regulators gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_14995 amad1_15000 amad1_15000 amad1_15000 3382918 3383787 - regulatory protein AmpE COG1270 Cobalamin biosynthesis protein CobD/CbiB gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15000 amad1_15005 amad1_15005 amad1_15005 3383818 3384354 - N-acetyl-anhydromuranmyl-L-alanine amidase COG3023 Negative regulator of beta-lactamase expression gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15005 amad1_15010 amad1_15010 amad1_15010 3384530 3385048 + aspartyl protease COG3577 Predicted aspartyl protease gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15010 amad1_15015 amad1_15015 amad1_15015 3385068 3385922 + nicotinate-nucleotide pyrophosphorylase COG0157 Nicotinate-nucleotide pyrophosphorylase gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15015 amad1_15020 amad1_15020 amad1_15020 3386458 3386886 + Pilus biogenesis protein tapA COG4969 Tfp pilus assembly protein%2C major pilin PilA gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15020 amad1_15025 amad1_15025 amad1_15025 3386961 3388169 + type IV pilus biogenesis protein PilC COG1459 Type II secretory pathway%2C component PulF gene gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15025 amad1_15030 amad1_15030 amad1_15030 3388299 3389192 + type 4 prepilin-like proteins leader peptide processing enzyme COG1989 Type II secretory pathway%2C prepilin signal peptidase PulO and related peptidases gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15030 amad1_15035 amad1_15035 coaE coaE 3389214 3389828 + dephospho-CoA kinase COG0237 Dephospho-CoA kinase gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15035 amad1_15040 amad1_15040 amad1_15040 3390041 3390793 + hypothetical protein COG4582 Uncharacterized protein conserved in bacteria gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15040 amad1_15045 amad1_15045 amad1_15045 3390884 3391111 + zinc-binding protein COG3024 Uncharacterized protein conserved in bacteria gene gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15045 amad1_15050 amad1_15050 amad1_15050 3391304 3392176 + aspartoacylase COG2988 Succinylglutamate desuccinylase gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15050 amad1_15055 amad1_15055 amad1_15055 3392268 3392651 - mutator mutT protein COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15055 amad1_15060 amad1_15060 amad1_15060 3392651 3395359 - preprotein translocase subunit SecA COG0653 Preprotein translocase subunit SecA (ATPase%2C RNA helicase) gene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15060 amad1_15065 amad1_15065 amad1_15065 3395541 3396419 - peptidase%2C M23/M37 family protein COG0739 Membrane proteins related to metalloendopeptidases gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15065 amad1_15070 amad1_15070 lpxC lpxC 3396598 3397509 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15070 amad1_15075 amad1_15075 amad1_15075 3397722 3398888 - cell division protein FtsZ COG0206 Cell division GTPase gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15075 amad1_15080 amad1_15080 amad1_15080 3398997 3400226 - cell division protein FtsA COG0849 Actin-like ATPase involved in cell division gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15080 amad1_15085 amad1_15085 amad1_15085 3400234 3401004 - cell division protein FtsQ COG1589 Cell division septal protein gene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15085 amad1_15090 amad1_15090 amad1_15090 3401007 3401975 - D-alanine--D-alanine ligase COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15090 amad1_15095 amad1_15095 murC murC 3401977 3403422 - UDP-N-acetylmuramate--L-alanine ligase COG0773 UDP-N-acetylmuramate-alanine ligase gene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15095 amad1_15100 amad1_15100 murG murG 3403422 3404516 - undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase gene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15100 amad1_15105 amad1_15105 amad1_15105 3404509 3405921 - cell division protein FtsW COG0772 Bacterial cell division membrane protein gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15105 amad1_15110 amad1_15110 amad1_15110 3405918 3407357 - UDP-N-acetylmuramoylalanine--D-glutamate ligase COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase gene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15110 amad1_15115 amad1_15115 amad1_15115 3407379 3408461 - phospho-N-acetylmuramoyl-pentapeptide-transferase COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase gene gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15115 amad1_15120 amad1_15120 amad1_15120 3408455 3409864 - D-alanine:D-alanine-adding enzyme COG0770 UDP-N-acetylmuramyl pentapeptide synthase gene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15120 amad1_15125 amad1_15125 amad1_15125 3409861 3411411 - UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelate ligase COG0769 UDP-N-acetylmuramyl tripeptide synthase gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15125 amad1_15130 amad1_15130 amad1_15130 3411401 3413173 - peptidoglycan synthetase FtsI COG0768 Cell division protein FtsI/penicillin-binding protein 2 gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15130 amad1_15135 amad1_15135 amad1_15135 3413170 3413505 - cell division protein FtsL COG3116 Cell division protein gene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15135 amad1_15140 amad1_15140 amad1_15140 3413502 3414443 - 16S rRNA m(4)C1402 methyltransferase COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis gene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15140 amad1_15145 amad1_15145 amad1_15145 3414440 3414898 - cell division protein MraZ COG2001 Uncharacterized protein conserved in bacteria gene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15145 amad1_15150 amad1_15150 amad1_15150 3415390 3416214 - hypothetical protein gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15150 amad1_15155 amad1_15155 amad1_15155 3416388 3417158 - SapC protein gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15155 amad1_15160 amad1_15160 amad1_15160 3417541 3418755 + membrane dipeptidase COG2355 Zn-dependent dipeptidase%2C microsomal dipeptidase homolog gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15160 amad1_15175 amad1_15175 amad1_15175 3422078 3422221 - hypothetical protein gene gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15175 amad1_15180 amad1_15180 amad1_15180 3422211 3422654 - putative cation efflux protein gene gene3067 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15180 amad1_15185 amad1_15185 amad1_15185 3422846 3423304 - hypothetical protein gene gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15185 amad1_15190 amad1_15190 amad1_15190 3423487 3424527 - phospholipase/Carboxylesterase COG2267 Lysophospholipase gene gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15190 amad1_15195 amad1_15195 amad1_15195 3424611 3425351 - putative peroxiredoxin/glutaredoxin family protein COG0678 Peroxiredoxin gene gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15195 amad1_15200 amad1_15200 amad1_15200 3425588 3426283 + parA family protein COG1192 ATPases involved in chromosome partitioning gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15200 amad1_15205 amad1_15205 amad1_15205 3426243 3426572 + RepA domain-containing protein COG0136 Aspartate-semialdehyde dehydrogenase gene gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15205 amad1_15210 amad1_15210 amad1_15210 3426696 3428834 + hypothetical protein COG2199 FOG: GGDEF domain gene gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15210 amad1_15215 amad1_15215 amad1_15215 3428847 3429164 + ADP-ribosylglycohydrolase family protein COG3791 Uncharacterized conserved protein gene gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15215 amad1_15220 amad1_15220 amad1_15220 3429232 3430593 - sigma-54 dependent DNA-binding response regulator%2C Fis family protein COG2204 Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains gene gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15220 amad1_15225 amad1_15225 amad1_15225 3430676 3432703 - sensor histidine kinase COG0642 Signal transduction histidine kinase gene gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15225 amad1_15230 amad1_15230 amad1_15230 3432818 3433942 - 3-oxoacyl-(acyl carrier protein) synthase III COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III gene gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15230 amad1_15235 amad1_15235 amad1_15235 3434555 3434647 + hypothetical protein gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15235 amad1_15240 amad1_15240 amad1_15240 3434808 3434969 + putative TonB-dependent receptor gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15240 amad1_15245 amad1_15245 amad1_15245 3435073 3436875 - putative alkaline phosphatase COG3391 Uncharacterized conserved protein gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15245 amad1_15250 amad1_15250 amad1_15250 3437327 3438124 + Zn-dependent protease with chaperone function COG0501 Zn-dependent protease with chaperone function gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15250 amad1_15255 amad1_15255 amad1_15255 3438225 3439067 - mechanosensitive ion channel MscS COG0668 Small-conductance mechanosensitive channel gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15255 amad1_15260 amad1_15260 amad1_15260 3439851 3440579 + hypothetical protein COG1385 Uncharacterized protein conserved in bacteria gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15260 amad1_15265 amad1_15265 amad1_15265 3440799 3441749 + glutathione synthetase COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) gene gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15265 amad1_15270 amad1_15270 amad1_15270 3441801 3442427 + transcription regulator COG1678 Putative transcriptional regulator gene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15270 amad1_15275 amad1_15275 amad1_15275 3442420 3442851 + Holliday junction resolvase-like protein COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) gene gene3086 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15275 amad1_15280 amad1_15280 amad1_15280 3442941 3443267 - hypothetical protein gene gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15280 amad1_15285 amad1_15285 amad1_15285 3443293 3444405 - twitching motility protein PilU (type IV pili) COG5008 Tfp pilus assembly protein%2C ATPase PilU gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15285 amad1_15290 amad1_15290 amad1_15290 3444414 3445457 - twitching motility protein PilT COG2805 Tfp pilus assembly protein%2C pilus retraction ATPase PilT gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15290 amad1_15295 amad1_15295 amad1_15295 3445485 3446183 + alanine racemase domain-containing protein COG0325 Predicted enzyme with a TIM-barrel fold gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15295 amad1_15300 amad1_15300 amad1_15300 3446235 3447056 + pyrroline-5-carboxylate reductase COG0345 Pyrroline-5-carboxylate reductase gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15300 amad1_15305 amad1_15305 amad1_15305 3447077 3447613 + hypothetical protein COG0762 Predicted integral membrane protein gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15305 amad1_15310 amad1_15310 amad1_15310 3447697 3448137 + hypothetical protein gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15310 amad1_15315 amad1_15315 amad1_15315 3448424 3450466 + 2%2C4-dienoyl-CoA reductase COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme family gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15315 amad1_15320 amad1_15320 amad1_15320 3450463 3450798 - glyoxalase/bleomycin resistance protein/dioxygenase COG0346 Lactoylglutathione lyase and related lyases gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15320 amad1_15325 amad1_15325 amad1_15325 3450957 3452792 - hypothetical protein COG4805 Uncharacterized protein conserved in bacteria gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15325 amad1_15330 amad1_15330 amad1_15330 3452870 3453502 - glutathione S-transferase domain-containing protein COG0625 Glutathione S-transferase gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15330 amad1_15335 amad1_15335 amad1_15335 3453858 3454403 + superoxide dismutase%2C Cu-Zn COG2032 Cu/Zn superoxide dismutase gene gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15335 amad1_15340 amad1_15340 amad1_15340 3454622 3455056 - osmotically inducible protein COG1764 Predicted redox protein%2C regulator of disulfide bond formation gene gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15340 amad1_15345 amad1_15345 amad1_15345 3455489 3455752 + peptide methionine sulfoxide reductase msrA 2 COG0225 Peptide methionine sulfoxide reductase gene gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15345 amad1_15350 amad1_15350 amad1_15350 3455935 3456456 + hypothetical protein COG2323 Predicted membrane protein gene gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15350 amad1_15355 amad1_15355 amad1_15355 3456488 3456835 - hypothetical protein gene gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15355 amad1_15360 amad1_15360 amad1_15360 3456825 3457547 - putative amino acid transporter COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) gene gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15360 amad1_15365 amad1_15365 amad1_15365 3457544 3458086 - Cro/CI family transcriptional regulator COG1396 Predicted transcriptional regulators gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15365 amad1_15370 amad1_15370 amad1_15370 3458614 3459873 + MFS permease COG2814 Arabinose efflux permease gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15370 amad1_15375 amad1_15375 amad1_15375 3459935 3460288 - hypothetical protein COG0724 RNA-binding proteins (RRM domain) gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15375 amad1_15380 amad1_15380 amad1_15380 3460572 3461351 - hypothetical protein COG3022 Uncharacterized protein conserved in bacteria gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15380 amad1_15385 amad1_15385 amad1_15385 3461742 3462005 + hypothetical protein gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15385 amad1_15390 amad1_15390 amad1_15390 3462002 3462961 + transaldolase B COG0176 Transaldolase gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15390 amad1_15395 amad1_15395 pgi pgi 3462976 3464625 + glucose-6-phosphate isomerase COG0166 Glucose-6-phosphate isomerase gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15395 amad1_15400 amad1_15400 amad1_15400 3464990 3465166 + hypothetical protein gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15400 amad1_15405 amad1_15405 amad1_15405 3465421 3466086 - uracil-DNA glycosylase COG0692 Uracil DNA glycosylase gene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15405 amad1_15410 amad1_15410 amad1_15410 3466086 3467369 - threonine synthase COG0498 Threonine synthase gene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15410 amad1_15415 amad1_15415 amad1_15415 3467531 3468478 - homoserine kinase COG0083 Homoserine kinase gene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15415 amad1_15420 amad1_15420 thrA thrA 3468604 3471069 - bifunctional aspartokinase I/homoserine dehydrogenase I COG0527 Aspartokinases gene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15420 amad1_15425 amad1_15425 amad1_15425 3471482 3473986 - putative excinuclease ABC subunit A COG0178 Excinuclease ATPase subunit gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15425 amad1_15430 amad1_15430 amad1_15430 3474108 3474986 - putative transcriptional regulator COG0583 Transcriptional regulator gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15430 amad1_15435 amad1_15435 amad1_15435 3475178 3476335 + S-(hydroxymethyl)glutathione dehydrogenase COG1062 Zn-dependent alcohol dehydrogenases%2C class III gene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15435 amad1_15440 amad1_15440 amad1_15440 3476559 3477245 + hypothetical protein gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15440 amad1_15445 amad1_15445 amad1_15445 3477384 3477716 + transcriptional regulator COG0640 Predicted transcriptional regulators gene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15445 amad1_15450 amad1_15450 amad1_15450 3477832 3478299 + arsenate reductase COG0394 Protein-tyrosine-phosphatase gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15450 amad1_15455 amad1_15455 amad1_15455 3478299 3479045 + NADPH-dependent FMN reductase COG0431 Predicted flavoprotein gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15455 amad1_15460 amad1_15460 amad1_15460 3479058 3480113 + arsenical pump membrane protein COG0798 Arsenite efflux pump ACR3 and related permeases gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15460 amad1_15465 amad1_15465 amad1_15465 3480259 3480657 - putative response regulator with Chemotaxis-specific methylesterase domain COG0784 FOG: CheY-like receiver gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15465 amad1_15470 amad1_15470 aceK aceK 3480836 3482569 + bifunctional isocitrate dehydrogenase kinase/phosphatase protein COG4579 Isocitrate dehydrogenase kinase/phosphatase gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15470 amad1_15475 amad1_15475 amad1_15475 3482790 3483470 + response regulator consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15475 amad1_15480 amad1_15480 amad1_15480 3483467 3484873 + Signal transduction histidine kinase COG0642 Signal transduction histidine kinase gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15480 amad1_15485 amad1_15485 amad1_15485 3484887 3485444 - lipoprotein gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15485 amad1_15490 amad1_15490 amad1_15490 3485502 3486005 - hypothetical protein gene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15490 amad1_15495 amad1_15495 amad1_15495 3486004 3486108 + hypothetical protein gene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15495 amad1_15500 amad1_15500 amad1_15500 3486170 3487093 + putative D-cysteine desulfhydrase COG2515 1-aminocyclopropane-1-carboxylate deaminase gene gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15500 amad1_15505 amad1_15505 amad1_15505 3487267 3487512 + hypothetical protein gene gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15505 amad1_15510 amad1_15510 amad1_15510 3487582 3488595 - adenosine deaminase COG1816 Adenosine deaminase gene gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15510 amad1_15515 amad1_15515 amad1_15515 3488883 3489695 - sterol desaturase protein COG3000 Sterol desaturase gene gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15515 amad1_15520 amad1_15520 amad1_15520 3489682 3490158 - hypothetical protein gene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15520 amad1_15535 amad1_15535 amad1_15535 3491488 3491898 + hypothetical protein gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15535 amad1_15540 amad1_15540 amad1_15540 3492039 3493241 + saccharopine dehydrogenase COG1748 Saccharopine dehydrogenase and related proteins gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15540 amad1_15545 amad1_15545 amad1_15545 3493394 3494524 + carboxynorspermidine decarboxylase COG0019 Diaminopimelate decarboxylase gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15545 amad1_15550 amad1_15550 amad1_15550 3494583 3494846 - hypothetical protein gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15550 amad1_15555 amad1_15555 amad1_15555 3494953 3495831 - putative methyltransferase COG0313 Predicted methyltransferases gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15555 amad1_15560 amad1_15560 amad1_15560 3495931 3497931 + putative lipoprotein COG3107 Putative lipoprotein gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15560 amad1_15565 amad1_15565 amad1_15565 3497936 3498277 + Sigma-54 factor COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase gene gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15565 amad1_15570 amad1_15570 amad1_15570 3498459 3499547 + putative lipopolysaccharide core biosynthesis mannosyltransferase COG0438 Glycosyltransferase gene gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15570 amad1_15575 amad1_15575 amad1_15575 3499726 3500322 + phosphoheptose isomerase COG0279 Phosphoheptose isomerase gene gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15575 amad1_15580 amad1_15580 amad1_15580 3500346 3500921 + transport-associated protein COG2823 Predicted periplasmic or secreted lipoprotein gene gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15580 amad1_15585 amad1_15585 amad1_15585 3500962 3502326 + MFS permease COG0477 Permeases of the major facilitator superfamily gene gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15585 amad1_15590 amad1_15590 amad1_15590 3502516 3503139 + hypothetical protein gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15590 amad1_15595 amad1_15595 amad1_15595 3503197 3503526 + emrE protein COG2076 Membrane transporters of cations and cationic drugs gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15595 amad1_15600 amad1_15600 amad1_15600 3503543 3504781 + sensor histidine kinase COG4585 Signal transduction histidine kinase gene gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15600 amad1_15605 amad1_15605 amad1_15605 3504778 3505395 + DNA-binding response regulator%2C LuxR family protein COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15605 amad1_15610 amad1_15610 amad1_15610 3505417 3505749 - hypothetical protein gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15610 amad1_15615 amad1_15615 amad1_15615 3505795 3506070 - hypothetical protein gene gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15615 amad1_15620 amad1_15620 amad1_15620 3506197 3508461 - putative TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15620 amad1_15625 amad1_15625 amad1_15625 3509258 3509920 + GntR family transcriptional regulator COG1802 Transcriptional regulators gene gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15625 amad1_15630 amad1_15630 prpB prpB 3509986 3510861 + 2-methylisocitrate lyase COG2513 PEP phosphonomutase and related enzymes gene gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15630 amad1_15635 amad1_15635 amad1_15635 3511099 3512220 + methylcitrate synthase COG0372 Citrate synthase gene gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15635 amad1_15640 amad1_15640 amad1_15640 3512236 3514827 + aconitate hydratase COG1048 Aconitase A gene gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15640 amad1_15645 amad1_15645 amad1_15645 3515105 3516286 + putative AcnD-accessory protein PrpF COG2828 Uncharacterized protein conserved in bacteria gene gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15645 amad1_15650 amad1_15650 amad1_15650 3516408 3517667 + response regulator containing a CheY-like receiver domain and a GGDEF domain COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain gene gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15650 amad1_15655 amad1_15655 amad1_15655 3517673 3518818 - transcriptional regulator COG1940 Transcriptional regulator/sugar kinase gene gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15655 amad1_15660 amad1_15660 amad1_15660 3518899 3520128 - hydroxypyruvate reductase COG2379 Putative glycerate kinase gene gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15660 amad1_15665 amad1_15665 amad1_15665 3520164 3521735 - SSS sodium solute transporter superfamily protein COG0591 Na+/proline symporter gene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15665 amad1_15690 amad1_15690 amad1_15690 3525779 3526984 + N-acylglucosamine 2-epimerase COG2942 N-acyl-D-glucosamine 2-epimerase gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15690 amad1_15695 amad1_15695 amad1_15695 3527049 3528677 - hypothetical protein COG3428 Predicted membrane protein gene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15695 amad1_15700 amad1_15700 amad1_15700 3528677 3529240 - hypothetical protein COG3402 Uncharacterized conserved protein gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15700 amad1_15705 amad1_15705 amad1_15705 3529364 3531718 - aerobic respiration control sensor protein ArcB COG0642 Signal transduction histidine kinase gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15705 amad1_15710 amad1_15710 amad1_15710 3531816 3532763 - N-acetylmuramoyl-L-alanine amidase COG3023 Negative regulator of beta-lactamase expression gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15710 amad1_15715 amad1_15715 gltB gltB 3533438 3537904 + glutamate synthase subunit alpha COG0067 Glutamate synthase domain 1 gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15715 amad1_15720 amad1_15720 gltD gltD 3537918 3539333 + glutamate synthase subunit beta COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15720 amad1_15725 amad1_15725 amad1_15725 3539528 3539968 + hypothetical protein gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15725 amad1_15730 amad1_15730 amad1_15730 3540180 3540767 + hypothetical protein gene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15730 amad1_15735 amad1_15735 amad1_15735 3540932 3541633 + 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase COG0775 Nucleoside phosphorylase gene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15735 amad1_15740 amad1_15740 amad1_15740 3541635 3542579 + adenosylcobinamide-phosphate synthase COG1270 Cobalamin biosynthesis protein CobD/CbiB gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15740 amad1_15745 amad1_15745 amad1_15745 3542655 3543581 + ABC transporter substrate-binding protein COG0614 ABC-type Fe3+-hydroxamate transport system%2C periplasmic component gene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15745 amad1_15750 amad1_15750 amad1_15750 3543745 3544155 + putative phage shock protein E COG0607 Rhodanese-related sulfurtransferase gene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15750 amad1_15755 amad1_15755 amad1_15755 3544313 3544714 + hypothetical protein gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15755 amad1_15760 amad1_15760 amad1_15760 3544722 3545321 + GNAT family acetyltransferase COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15760 amad1_15765 amad1_15765 amad1_15765 3545348 3546706 + putative oxidoreductase COG0665 Glycine/D-amino acid oxidases (deaminating) gene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15765 amad1_15770 amad1_15770 amad1_15770 3546885 3548084 - tyrosyl-tRNA synthetase COG0162 Tyrosyl-tRNA synthetase gene gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15770 amad1_15775 amad1_15775 amad1_15775 3548154 3548294 - hypothetical protein gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15775 amad1_15780 amad1_15780 amad1_15780 3548511 3549836 + Peptidase%2C M23/M37 family protein COG0739 Membrane proteins related to metalloendopeptidases gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15780 amad1_15785 amad1_15785 anmK anmK 3549844 3551046 + anhydro-N-acetylmuramic acid kinase COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15785 amad1_15790 amad1_15790 amad1_15790 3551097 3552434 - putative fucose permease COG0738 Fucose permease gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15790 amad1_15795 amad1_15795 amad1_15795 3552936 3554255 + regulator of pathogenicity factors COG3659 Carbohydrate-selective porin gene gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15795 amad1_15800 amad1_15800 amad1_15800 3554526 3555647 + xenobiotic reductase B COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme family gene gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15800 amad1_15805 amad1_15805 amad1_15805 3555751 3556197 - hypothetical protein COG3832 Uncharacterized conserved protein gene gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15805 amad1_15810 amad1_15810 amad1_15810 3556398 3558215 - homocysteine synthase COG2873 O-acetylhomoserine sulfhydrylase gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15810 amad1_15815 amad1_15815 amad1_15815 3558393 3559364 + D-isomer specific 2-hydroxyacid dehydrogenase family protein COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15815 amad1_15820 amad1_15820 amad1_15820 3559373 3559945 - glutathione S-transferase COG0625 Glutathione S-transferase gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15820 amad1_15825 amad1_15825 amad1_15825 3560094 3560438 - HesB protein family COG0316 Uncharacterized conserved protein gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15825 amad1_15830 amad1_15830 amad1_15830 3560596 3561375 - hypothetical protein gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15830 amad1_15835 amad1_15835 amad1_15835 3561506 3562345 + UDP-galactose-lipid carrier transferase MED92 COG2326 Uncharacterized conserved protein gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15835 amad1_15840 amad1_15840 minE minE 3562407 3562667 - cell division topological specificity factor MinE COG0851 Septum formation topological specificity factor gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15840 amad1_15845 amad1_15845 amad1_15845 3562667 3563476 - septum site-determining protein MinD COG2894 Septum formation inhibitor-activating ATPase gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15845 amad1_15850 amad1_15850 amad1_15850 3563507 3564301 - septum site-determining protein MinC COG0850 Septum formation inhibitor gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15850 amad1_15855 amad1_15855 amad1_15855 3564632 3566005 - fumarase COG0114 Fumarase gene gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15855 amad1_15860 amad1_15860 amad1_15860 3566419 3566868 + azurin COG3241 Azurin gene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15860 amad1_15865 amad1_15865 amad1_15865 3566982 3567689 - hypothetical protein gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15865 amad1_15870 amad1_15870 amad1_15870 3567796 3569472 + putative Voltage-gated ClC-type chloride channel clcA COG0038 Chloride channel protein EriC gene gene3199 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15870 amad1_15875 amad1_15875 amad1_15875 3569474 3569902 + hypothetical protein COG1981 Predicted membrane protein gene gene3200 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15875 amad1_15880 amad1_15880 amad1_15880 3570085 3570273 + hypothetical protein gene gene3201 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15880 amad1_15885 amad1_15885 amad1_15885 3570310 3571014 - yecA family protein gene gene3202 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15885 amad1_15890 amad1_15890 amad1_15890 3571255 3572451 + putative manganese/divalent cation transport protein COG1914 Mn2+ and Fe2+ transporters of the NRAMP family gene gene3203 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15890 amad1_15895 amad1_15895 amad1_15895 3572635 3573810 - Aminotransferase%2C class I and II COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities gene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15895 amad1_15900 amad1_15900 amad1_15900 3573952 3574329 - rteB%2C two-component system response regulator COG0784 FOG: CheY-like receiver gene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15900 amad1_15905 amad1_15905 amad1_15905 3574567 3576399 - BipA protein COG1217 Predicted membrane GTPase involved in stress response gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15905 amad1_15910 amad1_15910 amad1_15910 3576737 3576844 + hypothetical protein gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15910 amad1_15915 amad1_15915 amad1_15915 3576859 3578268 + glutamine synthetase COG0174 Glutamine synthetase gene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15915 amad1_15920 amad1_15920 amad1_15920 3578553 3579179 + hypothetical protein gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15920 amad1_15925 amad1_15925 amad1_15925 3579311 3580396 + nitrogen regulation protein NR(II) COG3852 Signal transduction histidine kinase%2C nitrogen specific gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15925 amad1_15930 amad1_15930 amad1_15930 3580386 3581795 + two-component system response regulator COG2204 Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15930 amad1_15935 amad1_15935 amad1_15935 3581886 3583025 - HD-GYP domain-containing protein COG0643 Chemotaxis protein histidine kinase and related kinases gene gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15935 amad1_15940 amad1_15940 amad1_15940 3583231 3583956 + 1-acyl-sn-glycerol-3-phosphate acyltransferase COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15940 amad1_15945 amad1_15945 amad1_15945 3583989 3584387 + RNase E inhibitor protein COG3076 Uncharacterized protein conserved in bacteria gene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15945 amad1_15950 amad1_15950 amad1_15950 3584501 3585313 + hypothetical protein gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15950 amad1_15970 amad1_15970 amad1_15970 3586415 3586636 - hypothetical protein COG4877 Uncharacterized protein conserved in bacteria gene gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15970 amad1_15975 amad1_15975 amad1_15975 3586704 3587552 - hypothetical protein COG0330 Membrane protease subunits%2C stomatin/prohibitin homologs gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15975 amad1_15980 amad1_15980 amad1_15980 3587739 3589022 + signal peptide prediction COG0687 Spermidine/putrescine-binding periplasmic protein gene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15980 amad1_15985 amad1_15985 amad1_15985 3589073 3591748 + response regulator receiver ATP-binding protein COG0642 Signal transduction histidine kinase gene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15985 amad1_15990 amad1_15990 valS valS 3591894 3594668 - valyl-tRNA ligase COG0525 Valyl-tRNA synthetase gene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15990 amad1_15995 amad1_15995 amad1_15995 3594704 3595126 - DNA polymerase III subunit chi COG2927 DNA polymerase III%2C chi subunit gene gene3221 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_15995 amad1_16000 amad1_16000 amad1_16000 3595133 3596638 - multifunctional aminopeptidase A COG0260 Leucyl aminopeptidase gene gene3222 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16000 amad1_16005 amad1_16005 amad1_16005 3596902 3598002 + permease YjgP/YjgQ COG0795 Predicted permeases gene gene3223 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16005 amad1_16010 amad1_16010 amad1_16010 3598003 3599064 + lipopolysaccharide ABC transporter permease COG0795 Predicted permeases gene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16010 amad1_16015 amad1_16015 amad1_16015 3599175 3599759 - RDD domain-containing protein COG1714 Predicted membrane protein/domain gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16015 amad1_16020 amad1_16020 amad1_16020 3599961 3602021 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16020 amad1_16025 amad1_16025 amad1_16025 3602191 3602724 + putative RNA polymerase sigma factor (ECF family) protein COG1595 DNA-directed RNA polymerase specialized sigma subunit%2C sigma24 homolog gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16025 amad1_16030 amad1_16030 amad1_16030 3602721 3603455 + hypothetical protein COG5343 Uncharacterized protein conserved in bacteria gene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16030 amad1_16035 amad1_16035 amad1_16035 3603618 3605210 + hypothetical protein gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16035 amad1_16040 amad1_16040 amad1_16040 3605222 3605788 + hypothetical protein COG2931 RTX toxins and related Ca2+-binding proteins gene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16040 amad1_16045 amad1_16045 amad1_16045 3605886 3606950 + putative signal peptide protein gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16045 amad1_16050 amad1_16050 amad1_16050 3606943 3608076 + hypothetical protein gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16050 amad1_16055 amad1_16055 amad1_16055 3608507 3610045 + hypothetical protein gene gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16055 amad1_16060 amad1_16060 amad1_16060 3610045 3610932 + D12 class N6 adenine-specific DNA methyltransferase COG0338 Site-specific DNA methylase gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16060 amad1_16065 amad1_16065 amad1_16065 3611245 3612003 + putative transmembrane protein COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes gene gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16065 amad1_16070 amad1_16070 amad1_16070 3612016 3612765 + hypothetical protein COG1432 Uncharacterized conserved protein gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16070 amad1_16075 amad1_16075 amad1_16075 3612771 3613079 - ribonuclease H-like protein COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16075 amad1_16080 amad1_16080 amad1_16080 3613145 3613735 - hypothetical protein gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16080 amad1_16085 amad1_16085 amad1_16085 3613758 3614201 - hypothetical protein gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16085 amad1_16090 amad1_16090 amad1_16090 3614220 3616253 - AAA family ATPase COG0464 ATPases of the AAA+ class gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16090 amad1_16095 amad1_16095 amad1_16095 3616261 3617157 - phage integrase family protein site-specific recombinase COG0582 Integrase gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16095 amad1_16100 amad1_16100 amad1_16100 3617318 3618334 - hypothetical protein gene gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16100 amad1_16105 amad1_16105 amad1_16105 3618336 3618920 - hypothetical protein gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16105 amad1_16110 amad1_16110 amad1_16110 3619619 3620689 + helix-turn-helix domain-containing protein COG1396 Predicted transcriptional regulators gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16110 amad1_16115 amad1_16115 amad1_16115 3620673 3621188 + hypothetical protein COG2405 Predicted nucleic acid-binding protein%2C contains PIN domain gene gene3246 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16115 amad1_16120 amad1_16120 amad1_16120 3621212 3622498 - integrase family protein COG0582 Integrase gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16120 amad1_16125 amad1_16125 amad1_16125 3622632 3623177 - cation diffusion facilitator family transporter COG1230 Co/Zn/Cd efflux system component gene gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16125 amad1_16130 amad1_16130 amad1_16130 3623511 3624143 - integral membrane protein COG0053 Predicted Co/Zn/Cd cation transporters gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16130 amad1_16135 amad1_16135 amad1_16135 3624398 3624541 - hypothetical protein gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16135 amad1_16140 amad1_16140 amad1_16140 3625506 3626435 - hypothetical protein gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16140 amad1_16145 amad1_16145 amad1_16145 3626809 3627717 + hypothetical protein gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16145 amad1_16150 amad1_16150 amad1_16150 3628103 3628696 + hypothetical protein gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16150 amad1_16155 amad1_16155 amad1_16155 3628725 3629120 - hypothetical protein gene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16155 amad1_16160 amad1_16160 amad1_16160 3629092 3630657 - transposase COG3436 Transposase and inactivated derivatives gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16160 amad1_16165 amad1_16165 amad1_16165 3630681 3631016 - transposase-like protein COG3436 Transposase and inactivated derivatives gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16165 amad1_16170 amad1_16170 amad1_16170 3631016 3631300 - hypothetical protein COG2801 Transposase and inactivated derivatives gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16170 amad1_16175 amad1_16175 amad1_16175 3631357 3632010 + hypothetical protein gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16175 amad1_16180 amad1_16180 amad1_16180 3632472 3632765 - Plasmid stabilization system A COG3668 Plasmid stabilization system protein gene gene3259 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16180 amad1_16185 amad1_16185 amad1_16185 3632752 3633012 - transcriptional regulator COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain gene gene3260 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16185 amad1_16190 amad1_16190 amad1_16190 3633472 3633819 - hypothetical protein gene gene3261 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16190 amad1_16195 amad1_16195 amad1_16195 3633806 3634033 - prevent-host-death protein COG2161 Antitoxin of toxin-antitoxin stability system gene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16195 amad1_16200 amad1_16200 amad1_16200 3634228 3635895 + hypothetical protein COG0457 FOG: TPR repeat gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16200 amad1_16205 amad1_16205 amad1_16205 3636468 3636875 - hypothetical protein gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16205 amad1_16210 amad1_16210 amad1_16210 3636965 3637219 - hypothetical protein gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16210 amad1_16215 amad1_16215 amad1_16215 3637478 3638194 - GntR family transcriptional regulator COG1802 Transcriptional regulators gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16215 amad1_16220 amad1_16220 amad1_16220 3638366 3640975 - hypothetical protein gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16220 amad1_16225 amad1_16225 amad1_16225 3641231 3643948 + glycoside hydrolase family protein COG3250 Beta-galactosidase/beta-glucuronidase gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16225 amad1_16230 amad1_16230 amad1_16230 3644017 3645924 + hypothetical protein gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16230 amad1_16235 amad1_16235 amad1_16235 3646024 3647232 - bifunctional D-altronate/D-mannonate dehydratase COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16235 amad1_16240 amad1_16240 amad1_16240 3647294 3649369 - alpha-glucuronidase COG3661 Alpha-glucuronidase gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16240 amad1_16245 amad1_16245 amad1_16245 3649549 3651240 - glycoside hydrolase family 43 domain-containing protein COG3507 Beta-xylosidase gene gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16245 amad1_16250 amad1_16250 amad1_16250 3651346 3651693 - periplasmic protein gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16250 amad1_16255 amad1_16255 amad1_16255 3652209 3653060 + diguanylate cyclase COG2199 FOG: GGDEF domain gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16255 amad1_16260 amad1_16260 amad1_16260 3653451 3654002 + hypothetical protein gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16260 amad1_16265 amad1_16265 amad1_16265 3654139 3654495 + translation initiation inhibitor COG0251 Putative translation initiation inhibitor%2C yjgF family gene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16265 amad1_16270 amad1_16270 amad1_16270 3654692 3655480 + lipase-like protein COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16270 amad1_16275 amad1_16275 amad1_16275 3655571 3656644 + hypothetical protein COG1397 ADP-ribosylglycohydrolase gene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16275 amad1_16280 amad1_16280 amad1_16280 3656758 3657846 - glucose-fructose oxidoreductase COG0673 Predicted dehydrogenases and related proteins gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16280 amad1_16285 amad1_16285 amad1_16285 3657981 3658880 - PAS sensor signal transduction histidine kinase COG0642 Signal transduction histidine kinase gene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16285 amad1_16290 amad1_16290 amad1_16290 3659344 3660507 + transport protein COG0628 Predicted permease gene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16290 amad1_16295 amad1_16295 amad1_16295 3660710 3661156 - Stress responsive alpha-beta barrel gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16295 amad1_16300 amad1_16300 amad1_16300 3661348 3662079 - metal-binding protein COG0748 Putative heme iron utilization protein gene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16300 amad1_16305 amad1_16305 amad1_16305 3662117 3662947 - hemin ABC transporter ATPase COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems%2C ATPase components gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16305 amad1_16310 amad1_16310 amad1_16310 3662953 3664113 - hemin ABC transporter pemease component COG0609 ABC-type Fe3+-siderophore transport system%2C permease component gene gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16310 amad1_16315 amad1_16315 amad1_16315 3664113 3665072 - hemin ABC transporter periplasmic protein COG4558 ABC-type hemin transport system%2C periplasmic component gene gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16315 amad1_16320 amad1_16320 amad1_16320 3665073 3666215 - hypothetical protein gene gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16320 amad1_16325 amad1_16325 amad1_16325 3666443 3668386 - ferrienterochelin/colicin outer membrane receptor COG4771 Outer membrane receptor for ferrienterochelin and colicins gene gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16325 amad1_16330 amad1_16330 amad1_16330 3668621 3668812 + hypothetical protein gene gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16330 amad1_16335 amad1_16335 amad1_16335 3669112 3669981 + glycerol uptake facilitator protein GlpF COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) gene gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16335 amad1_16340 amad1_16340 amad1_16340 3670053 3670916 + putative MadN protein COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16340 amad1_16345 amad1_16345 amad1_16345 3670935 3671417 - hypothetical protein gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16345 amad1_16350 amad1_16350 amad1_16350 3671491 3673365 - hypothetical protein COG4796 Type II secretory pathway%2C component HofQ gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16350 amad1_16355 amad1_16355 amad1_16355 3673652 3675802 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16355 amad1_16360 amad1_16360 amad1_16360 3675954 3679109 - glycosyl hydrolase family protein gene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16360 amad1_16365 amad1_16365 amad1_16365 3679325 3679882 - hypothetical protein COG1971 Predicted membrane protein gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16365 amad1_16370 amad1_16370 amad1_16370 3680403 3680960 + lipoprotein gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16370 amad1_16375 amad1_16375 amad1_16375 3680989 3682404 - Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16375 amad1_16380 amad1_16380 amad1_16380 3682672 3684375 + hypothetical protein COG0397 Uncharacterized conserved protein gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16380 amad1_16385 amad1_16385 amad1_16385 3684402 3685607 - putative metal-dependent dipeptidase COG0006 Xaa-Pro aminopeptidase gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16385 amad1_16390 amad1_16390 amad1_16390 3685748 3686866 - adenosylhomocysteinase COG0499 S-adenosylhomocysteine hydrolase gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16390 amad1_16405 amad1_16405 amad1_16405 3688950 3689882 + putative malonate transporter COG0679 Predicted permeases gene gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16405 amad1_16410 amad1_16410 amad1_16410 3690023 3690520 - cytochrome c-550 COG2010 Cytochrome c%2C mono- and diheme variants gene gene3303 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16410 amad1_16415 amad1_16415 amad1_16415 3690817 3692604 - methanol/ethanol family PQQ-dependent dehydrogenase COG4993 Glucose dehydrogenase gene gene3304 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16415 amad1_16420 amad1_16420 amad1_16420 3692978 3693886 - hypothetical protein COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene3305 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16420 amad1_16425 amad1_16425 amad1_16425 3693987 3695420 + hypothetical protein gene gene3306 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16425 amad1_16430 amad1_16430 amad1_16430 3695417 3696394 + hypothetical protein COG3391 Uncharacterized conserved protein gene gene3307 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16430 amad1_16435 amad1_16435 amad1_16435 3696385 3697107 + ABC transporter ATP-binding protein COG1131 ABC-type multidrug transport system%2C ATPase component gene gene3308 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16435 amad1_16440 amad1_16440 amad1_16440 3697107 3697889 + putative daunorubicin resistance ABC transporter permease COG0842 ABC-type multidrug transport system%2C permease component gene gene3309 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16440 amad1_16445 amad1_16445 amad1_16445 3697886 3699754 + multifunctional aminopeptidase A COG0260 Leucyl aminopeptidase gene gene3310 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16445 amad1_16450 amad1_16450 amad1_16450 3700003 3700923 + pyrroloquinoline quinone biosynthesis protein PqqB COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I gene gene3311 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16450 amad1_16455 amad1_16455 amad1_16455 3700926 3701681 + pyrroloquinoline quinone biosynthesis protein PqqC COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C gene gene3312 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16455 amad1_16460 amad1_16460 amad1_16460 3701681 3702085 + pyrroloquinoline quinone biosynthesis protein PqqD gene gene3313 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16460 amad1_16465 amad1_16465 amad1_16465 3702075 3703235 + pyrroloquinoline quinone biosynthesis protein PqqE COG0535 Predicted Fe-S oxidoreductases gene gene3314 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16465 amad1_16470 amad1_16470 amad1_16470 3703338 3705209 + peptidase M16 domain-containing protein COG1026 Predicted Zn-dependent peptidases%2C insulinase-like gene gene3315 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16470 amad1_16475 amad1_16475 amad1_16475 3705330 3707816 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3316 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16475 amad1_16480 amad1_16480 amad1_16480 3708097 3709326 + hypothetical protein gene gene3317 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16480 amad1_16485 amad1_16485 amad1_16485 3709526 3710386 + hypothetical protein gene gene3318 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16485 amad1_16490 amad1_16490 amad1_16490 3710659 3711318 + two component LuxR family transcriptional regulator COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene3319 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16490 amad1_16495 amad1_16495 amad1_16495 3711375 3713888 - PAS/PAC sensor-containing hybrid histidine kinase COG0642 Signal transduction histidine kinase gene gene3320 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16495 amad1_16500 amad1_16500 amad1_16500 3713875 3715065 - hypothetical protein COG3287 Uncharacterized conserved protein gene gene3321 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16500 amad1_16505 amad1_16505 amad1_16505 3715034 3717076 - FMN-binding domain-containing protein COG3901 Regulator of nitric oxide reductase transcription gene gene3322 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16505 amad1_16510 amad1_16510 amad1_16510 3717171 3718688 - aldehyde dehydrogenase family protein COG1012 NAD-dependent aldehyde dehydrogenases gene gene3323 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16510 amad1_16515 amad1_16515 amad1_16515 3718831 3719508 - two component LuxR family transcriptional regulator COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene3324 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16515 amad1_16520 amad1_16520 amad1_16520 3719505 3720764 - sensor histidine kinase COG4585 Signal transduction histidine kinase gene gene3325 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16520 amad1_16525 amad1_16525 amad1_16525 3720909 3721793 - transcriptional regulatory protein COG0583 Transcriptional regulator gene gene3326 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16525 amad1_16530 amad1_16530 amad1_16530 3721892 3723391 + methylmalonate-semialdehyde dehydrogenase COG1012 NAD-dependent aldehyde dehydrogenases gene gene3327 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16530 amad1_16535 amad1_16535 amad1_16535 3723406 3724281 + 3-hydroxyisobutyrate dehydrogenase COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases gene gene3328 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16535 amad1_16540 amad1_16540 amad1_16540 3724430 3726574 - putative high-affinity choline transport protein COG1292 Choline-glycine betaine transporter gene gene3329 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16540 amad1_16545 amad1_16545 amad1_16545 3726802 3727410 + ECF subfamily RNA polymerase sigma-24 subunit COG1595 DNA-directed RNA polymerase specialized sigma subunit%2C sigma24 homolog gene gene3330 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16545 amad1_16550 amad1_16550 amad1_16550 3727447 3728475 + FecR/PupR family sigma factor regulatory protein COG3712 Fe2+-dicitrate sensor%2C membrane component gene gene3331 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16550 amad1_16555 amad1_16555 amad1_16555 3728668 3731178 + TonB-dependent receptor%2C plug COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3332 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16555 amad1_16560 amad1_16560 amad1_16560 3731231 3732691 + metallophosphoesterase COG1409 Predicted phosphohydrolases gene gene3333 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16560 amad1_16565 amad1_16565 amad1_16565 3732753 3733652 - LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene3334 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16565 amad1_16570 amad1_16570 lldD lldD 3733756 3734889 + L-lactate dehydrogenase COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases gene gene3335 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16570 amad1_16575 amad1_16575 amad1_16575 3735012 3736745 - D-lactate dehydrogenase COG0277 FAD/FMN-containing dehydrogenases gene gene3336 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16575 amad1_16580 amad1_16580 amad1_16580 3737020 3737697 + putative transcriptional regulator COG2771 DNA-binding HTH domain-containing proteins gene gene3337 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16580 amad1_16585 amad1_16585 amad1_16585 3737733 3738494 - curli production assembly/transport component CsgG COG1462 Uncharacterized protein involved in formation of curli polymers gene gene3338 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16585 amad1_16590 amad1_16590 amad1_16590 3738503 3738958 - putative curli production assembly/transport protein gene gene3339 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16590 amad1_16595 amad1_16595 amad1_16595 3738952 3739344 - curli production assembly/transport component COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) gene gene3340 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16595 amad1_16600 amad1_16600 amad1_16600 3739386 3740837 - putative secreted major subunit of curlin gene gene3341 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16600 amad1_16605 amad1_16605 amad1_16605 3740862 3741374 - minor curlin subunit CsgB gene gene3342 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16605 amad1_16610 amad1_16610 amad1_16610 3741852 3744374 + putative secreted serine protease COG1404 Subtilisin-like serine proteases gene gene3343 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16610 amad1_16615 amad1_16615 amad1_16615 3744584 3745240 + response regulator (activator) in two-component regulatory system wtih UhpB COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene3344 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16615 amad1_16620 amad1_16620 amad1_16620 3745288 3746727 + 2-keto-4-pentenoate hydratase COG3971 2-keto-4-pentenoate hydratase gene gene3345 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16620 amad1_16625 amad1_16625 amad1_16625 3746827 3747663 + thiol-disulfide isomerase COG1331 Highly conserved protein containing a thioredoxin domain gene gene3346 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16625 amad1_16630 amad1_16630 amad1_16630 3747738 3749180 - ATP-dependent RNA helicase RhlE COG0513 Superfamily II DNA and RNA helicases gene gene3347 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16630 amad1_16635 amad1_16635 amad1_16635 3749919 3750440 - ISSod6%2C transposase COG3293 Transposase and inactivated derivatives gene gene3348 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16635 amad1_16640 amad1_16640 amad1_16640 3750547 3751557 - quinol oxidase subunit II COG1294 Cytochrome bd-type quinol oxidase%2C subunit 2 gene gene3349 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16640 amad1_16645 amad1_16645 amad1_16645 3751567 3752931 - quinol oxidase subunit I COG1271 Cytochrome bd-type quinol oxidase%2C subunit 1 gene gene3350 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16645 amad1_16650 amad1_16650 amad1_16650 3753314 3754264 + transposase ISSba17 protein COG2826 Transposase and inactivated derivatives%2C IS30 family gene gene3351 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16650 amad1_16655 amad1_16655 amad1_16655 3755059 3755904 + family 2 glycosyl transferase gene gene3352 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16655 amad1_16660 amad1_16660 amad1_16660 3756203 3757312 + acetate kinase COG0282 Acetate kinase gene gene3353 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16660 amad1_16665 amad1_16665 amad1_16665 3757312 3759639 + D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase COG3957 Phosphoketolase gene gene3354 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16665 amad1_16670 amad1_16670 amad1_16670 3759807 3761000 + cytochrome P450 COG2124 Cytochrome P450 gene gene3355 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16670 amad1_16675 amad1_16675 amad1_16675 3761614 3762144 + hypothetical protein COG3544 Uncharacterized protein conserved in bacteria gene gene3356 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16675 amad1_16680 amad1_16680 amad1_16680 3762137 3762868 + hypothetical protein COG0695 Glutaredoxin and related proteins gene gene3357 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16680 amad1_16685 amad1_16685 amad1_16685 3763273 3763635 - hypothetical protein gene gene3358 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16685 amad1_16690 amad1_16690 amad1_16690 3764195 3764617 - diguanylate cyclase COG2199 FOG: GGDEF domain gene gene3359 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16690 amad1_16695 amad1_16695 amad1_16695 3764852 3765382 - hypothetical protein gene gene3360 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16695 amad1_16700 amad1_16700 amad1_16700 3765768 3766214 + membrane protein gene gene3361 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16700 amad1_16705 amad1_16705 amad1_16705 3766223 3766693 - hypothetical protein COG4244 Predicted membrane protein gene gene3362 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16705 amad1_16710 amad1_16710 amad1_16710 3766958 3767314 - hypothetical protein gene gene3363 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16710 amad1_16715 amad1_16715 amad1_16715 3767739 3768800 + hypothetical protein COG4469 Competence protein gene gene3364 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16715 amad1_16720 amad1_16720 amad1_16720 3768856 3769236 - hypothetical protein gene gene3365 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16720 amad1_16725 amad1_16725 amad1_16725 3769534 3769770 - hypothetical protein gene gene3366 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16725 amad1_16730 amad1_16730 amad1_16730 3769795 3769947 - hypothetical protein gene gene3367 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16730 amad1_16735 amad1_16735 amad1_16735 3769971 3770267 - hypothetical protein gene gene3368 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16735 amad1_16740 amad1_16740 amad1_16740 3770281 3770619 - transcriptional modulator of MazE/toxin MazF COG2337 Growth inhibitor gene gene3369 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16740 amad1_16745 amad1_16745 amad1_16745 3770619 3770876 - suppressor of inhibitory function of ChpB COG2336 Growth regulator gene gene3370 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16745 amad1_16750 amad1_16750 amad1_16750 3771300 3773774 - DNA polymerase III subunit epsilon COG0451 Nucleoside-diphosphate-sugar epimerases gene gene3371 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16750 amad1_16755 amad1_16755 amad1_16755 3774222 3775787 + dioxygenase%2C ferredoxin reductase component COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases gene gene3372 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16755 amad1_16760 amad1_16760 amad1_16760 3775897 3776700 - hypothetical protein COG3336 Predicted membrane protein gene gene3373 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16760 amad1_16765 amad1_16765 amad1_16765 3776691 3777032 - hypothetical protein gene gene3374 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16765 amad1_16770 amad1_16770 amad1_16770 3777029 3779536 - putative cytochrome c oxidase subunit I COG0843 Heme/copper-type cytochrome/quinol oxidases%2C subunit 1 gene gene3375 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16770 amad1_16775 amad1_16775 amad1_16775 3779533 3780231 - putative cytochrome c oxidase chain II protein COG1622 Heme/copper-type cytochrome/quinol oxidases%2C subunit 2 gene gene3376 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16775 amad1_16780 amad1_16780 amad1_16780 3781728 3783005 - acetate kinase COG0282 Acetate kinase gene gene3377 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16780 amad1_16785 amad1_16785 amad1_16785 3783304 3784149 - family 2 glycosyl transferase gene gene3378 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16785 amad1_16790 amad1_16790 amad1_16790 3784944 3785894 - transposase ISSba17 protein COG2826 Transposase and inactivated derivatives%2C IS30 family gene gene3379 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16790 amad1_16795 amad1_16795 amad1_16795 3786277 3787641 + quinol oxidase subunit I COG1271 Cytochrome bd-type quinol oxidase%2C subunit 1 gene gene3380 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16795 amad1_16800 amad1_16800 amad1_16800 3787651 3788661 + quinol oxidase subunit II COG1294 Cytochrome bd-type quinol oxidase%2C subunit 2 gene gene3381 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16800 amad1_16805 amad1_16805 amad1_16805 3788756 3789514 + transposase%2C IS4 family protein COG3293 Transposase and inactivated derivatives gene gene3382 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16805 amad1_16830 amad1_16830 amad1_16830 3792638 3793369 + GntR family transcriptional regulator COG2186 Transcriptional regulators gene gene3383 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16830 amad1_16835 amad1_16835 amad1_16835 3794016 3795341 + mechanosensitive ion channel family protein COG3264 Small-conductance mechanosensitive channel gene gene3384 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16835 amad1_16840 amad1_16840 amad1_16840 3795369 3795854 - hypothetical protein gene gene3385 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16840 amad1_16845 amad1_16845 amad1_16845 3795972 3796094 - hypothetical protein gene gene3386 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16845 amad1_16850 amad1_16850 amad1_16850 3796166 3798466 - catalase/hydroperoxidase HPI(I) COG0376 Catalase (peroxidase I) gene gene3387 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16850 amad1_16855 amad1_16855 amad1_16855 3798978 3799574 + putative outer membrane protein A gene gene3388 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16855 amad1_16860 amad1_16860 amad1_16860 3800026 3802242 + Phospholipase D/Transphosphatidylase COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes gene gene3389 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16860 amad1_16865 amad1_16865 amad1_16865 3802230 3802943 + endonuclease/exonuclease/phosphatase COG3568 Metal-dependent hydrolase gene gene3390 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16865 amad1_16870 amad1_16870 amad1_16870 3802991 3803971 - LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene3391 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16870 amad1_16875 amad1_16875 amad1_16875 3804401 3806995 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3392 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16875 amad1_16880 amad1_16880 amad1_16880 3807110 3807931 + membrane protein COG0730 Predicted permeases gene gene3393 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16880 amad1_16885 amad1_16885 amad1_16885 3807955 3809130 + putative aminotransferase COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase gene gene3394 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16885 amad1_16890 amad1_16890 amad1_16890 3809377 3809742 + response regulator COG0784 FOG: CheY-like receiver gene gene3395 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16890 amad1_16895 amad1_16895 amad1_16895 3809739 3810323 + chemotaxis protein CheC COG1776 Chemotaxis protein CheC%2C inhibitor of MCP methylation gene gene3396 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16895 amad1_16900 amad1_16900 amad1_16900 3810323 3811633 + sensor histidine kinase COG0642 Signal transduction histidine kinase gene gene3397 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16900 amad1_16905 amad1_16905 amad1_16905 3811702 3812733 - metallo-beta-lactamase family protein COG0491 Zn-dependent hydrolases%2C including glyoxylases gene gene3398 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16905 amad1_16910 amad1_16910 amad1_16910 3812979 3815351 + DNA polymerase II COG0417 DNA polymerase elongation subunit (family B) gene gene3399 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16910 amad1_16915 amad1_16915 amad1_16915 3815606 3816184 + hypothetical protein gene gene3400 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16915 amad1_16920 amad1_16920 amad1_16920 3816538 3818277 + AMP-binding domain protein COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II gene gene3401 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16920 amad1_16925 amad1_16925 amad1_16925 3824383 3824847 + RNA-binding protein COG0724 RNA-binding proteins (RRM domain) gene gene3407 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16925 amad1_16930 amad1_16930 amad1_16930 3824919 3826244 - hypothetical protein gene gene3408 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16930 amad1_16935 amad1_16935 amad1_16935 3826408 3827505 + tRNA (uracil-5-)-methyltransferase COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase gene gene3409 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16935 amad1_16940 amad1_16940 amad1_16940 3827555 3828148 - DNA-binding transcriptional repressor FabR COG1309 Transcriptional regulator gene gene3410 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16940 amad1_16945 amad1_16945 amad1_16945 3828490 3829617 + putative delta-9 fatty acid desaturase COG1398 Fatty-acid desaturase gene gene3411 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16945 amad1_16950 amad1_16950 amad1_16950 3829909 3831243 + soluble pyridine nucleotide transhydrogenase COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes gene gene3412 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16950 amad1_16955 amad1_16955 amad1_16955 3831298 3831603 - soluble pyridine nucleotide transhydrogenase gene gene3413 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16955 amad1_16960 amad1_16960 amad1_16960 3831718 3832305 + uracil-DNA glycosylase COG1573 Uracil-DNA glycosylase gene gene3414 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16960 amad1_16965 amad1_16965 amad1_16965 3832302 3834527 - response regulator/GGDEF/EAL domain-containing protein COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain gene gene3415 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16965 amad1_16970 amad1_16970 amad1_16970 3834669 3835574 + hypothetical protein gene gene3416 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16970 amad1_16975 amad1_16975 amad1_16975 3835571 3836317 - phosphoadenosine phosphosulfate reductase COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes gene gene3417 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16975 amad1_16980 amad1_16980 amad1_16980 3836307 3838028 - sulfite reductase subunit beta COG0155 Sulfite reductase%2C beta subunit (hemoprotein) gene gene3418 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16980 amad1_16985 amad1_16985 amad1_16985 3838028 3839854 - sulfite reductase subunit alpha (flavoprotein) COG0369 Sulfite reductase%2C alpha subunit (flavoprotein) gene gene3419 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16985 amad1_16990 amad1_16990 amad1_16990 3840053 3840808 - hypothetical protein gene gene3420 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16990 amad1_16995 amad1_16995 amad1_16995 3840812 3841804 - hypothetical protein COG5345 Uncharacterized protein conserved in bacteria gene gene3421 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_16995 amad1_17000 amad1_17000 amad1_17000 3841961 3842323 - hypothetical protein gene gene3422 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17000 amad1_17005 amad1_17005 amad1_17005 3842323 3842523 - phage shock protein C COG1983 Putative stress-responsive transcriptional regulator gene gene3423 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17005 amad1_17010 amad1_17010 amad1_17010 3842587 3843255 - phage shock protein A COG1842 Phage shock protein A (IM30)%2C suppresses sigma54-dependent transcription gene gene3424 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17010 amad1_17015 amad1_17015 amad1_17015 3843587 3843874 - major facilitator superfamily protein gene gene3425 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17015 amad1_17020 amad1_17020 amad1_17020 3844064 3845080 - tRNA-dihydrouridine synthase A COG0042 tRNA-dihydrouridine synthase gene gene3426 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17020 amad1_17025 amad1_17025 amad1_17025 3845783 3846031 - hypothetical protein gene gene3427 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17025 amad1_17030 amad1_17030 amad1_17030 3846217 3846858 - hypothetical protein gene gene3428 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17030 amad1_17035 amad1_17035 amad1_17035 3847225 3847776 + hypothetical protein COG1196 Chromosome segregation ATPases gene gene3429 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17035 amad1_17040 amad1_17040 amad1_17040 3847780 3849543 + OmpA/MotB protein COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins gene gene3430 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17040 amad1_17045 amad1_17045 amad1_17045 3849559 3850044 + small GTP-binding protein COG1100 GTPase SAR1 and related small G proteins gene gene3431 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17045 amad1_17050 amad1_17050 amad1_17050 3850054 3852174 + sensory box-containing diguanylate cyclase COG5001 Predicted signal transduction protein containing a membrane domain%2C an EAL and a GGDEF domain gene gene3432 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17050 amad1_17055 amad1_17055 amad1_17055 3852277 3853119 - Carboxylesterase COG0627 Predicted esterase gene gene3433 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17055 amad1_17060 amad1_17060 amad1_17060 3853233 3854147 + acyltransferase COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase gene gene3434 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17060 amad1_17065 amad1_17065 amad1_17065 3854144 3855037 + acyltransferase COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase gene gene3435 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17065 amad1_17070 amad1_17070 amad1_17070 3855041 3856471 + mechanosensitive ion channel COG0668 Small-conductance mechanosensitive channel gene gene3436 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17070 amad1_17075 amad1_17075 amad1_17075 3856541 3856732 - hypothetical protein gene gene3437 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17075 amad1_17080 amad1_17080 amad1_17080 3857068 3857880 + putative secreted protein gene gene3438 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17080 amad1_17085 amad1_17085 amad1_17085 3858099 3858911 + hypothetical protein COG0451 Nucleoside-diphosphate-sugar epimerases gene gene3439 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17085 amad1_17090 amad1_17090 amad1_17090 3858980 3860401 - putative sodium-dependent transporter COG0733 Na+-dependent transporters of the SNF family gene gene3440 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17090 amad1_17095 amad1_17095 amad1_17095 3860670 3861395 - oxidoreductase%2C short-chain dehydrogenase/reductase family protein COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene3441 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17095 amad1_17100 amad1_17100 amad1_17100 3861385 3861780 - hypothetical protein COG3011 Uncharacterized protein conserved in bacteria gene gene3442 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17100 amad1_17105 amad1_17105 amad1_17105 3862042 3862587 + peptide methionine sulfoxide reductase MsrA COG0225 Peptide methionine sulfoxide reductase gene gene3443 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17105 amad1_17110 amad1_17110 amad1_17110 3862683 3863804 - hypothetical protein gene gene3444 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17110 amad1_17115 amad1_17115 amad1_17115 3864059 3865924 + peptide methionine sulfoxide reductase gene gene3445 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17115 amad1_17120 amad1_17120 amad1_17120 3865942 3866478 + flavodoxin FldB COG0716 Flavodoxins gene gene3446 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17120 amad1_17125 amad1_17125 amad1_17125 3866504 3867292 + hypothetical protein gene gene3447 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17125 amad1_17130 amad1_17130 amad1_17130 3867435 3867845 + biopolymer transport protein ExbD/TolR COG0848 Biopolymer transport protein gene gene3448 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17130 amad1_17135 amad1_17135 amad1_17135 3867842 3868027 - hypothetical protein COG0587 DNA polymerase III%2C alpha subunit gene gene3449 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17135 amad1_17140 amad1_17140 amad1_17140 3868029 3869444 + Rhs family protein gene gene3450 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17140 amad1_17145 amad1_17145 amad1_17145 3869496 3871943 - cellulose synthase operon protein C COG0457 FOG: TPR repeat gene gene3451 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17145 amad1_17150 amad1_17150 amad1_17150 3871940 3873040 - endoglucanase Y COG3405 Endoglucanase Y gene gene3452 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17150 amad1_17155 amad1_17155 amad1_17155 3873034 3875310 - celB protein gene gene3453 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17155 amad1_17160 amad1_17160 amad1_17160 3875310 3877433 - cellulose synthase catalytic subunit COG1215 Glycosyltransferases%2C probably involved in cell wall biogenesis gene gene3454 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17160 amad1_17165 amad1_17165 amad1_17165 3877510 3878082 - hypothetical protein gene gene3455 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17165 amad1_17170 amad1_17170 amad1_17170 3878362 3878856 - hypothetical protein gene gene3456 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17170 amad1_17175 amad1_17175 amad1_17175 3878870 3879631 - putative RNA methyltransferase COG4123 Predicted O-methyltransferase gene gene3457 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17175 amad1_17180 amad1_17180 amad1_17180 3879718 3880338 - nucleoside-diphosphate-sugar epimerase COG0702 Predicted nucleoside-diphosphate-sugar epimerases gene gene3458 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17180 amad1_17185 amad1_17185 amad1_17185 3880409 3882622 + dipeptidyl peptidase IV COG0823 Periplasmic component of the Tol biopolymer transport system gene gene3459 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17185 amad1_17190 amad1_17190 amad1_17190 3882753 3883127 - hypothetical protein gene gene3460 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17190 amad1_17195 amad1_17195 amad1_17195 3883140 3884147 - PAS sensor diguanylate cyclase and phosphodiesterase COG5001 Predicted signal transduction protein containing a membrane domain%2C an EAL and a GGDEF domain gene gene3461 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17195 amad1_17200 amad1_17200 amad1_17200 3884243 3884659 - PAS sensor diguanylate cyclase and phosphodiesterase gene gene3462 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17200 amad1_17205 amad1_17205 amad1_17205 3884831 3885847 + threonine dehydratase COG1171 Threonine dehydratase gene gene3463 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17205 amad1_17210 amad1_17210 amad1_17210 3885919 3887559 + putative metal-dependent amidohydrolase COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold gene gene3464 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17210 amad1_17215 amad1_17215 amad1_17215 3887579 3888886 + amino acid permease-associated protein COG0531 Amino acid transporters gene gene3465 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17215 amad1_17220 amad1_17220 amad1_17220 3888890 3889531 + putative metallo-beta-lactamase COG0491 Zn-dependent hydrolases%2C including glyoxylases gene gene3466 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17220 amad1_17225 amad1_17225 amad1_17225 3889684 3890199 - glyoxalase family protein COG0346 Lactoylglutathione lyase and related lyases gene gene3467 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17225 amad1_17230 amad1_17230 amad1_17230 3890373 3891365 + LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene3468 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17230 amad1_17235 amad1_17235 amad1_17235 3891362 3892195 - glutamine amidotransferase class-II domain-containing protein COG0121 Predicted glutamine amidotransferase gene gene3469 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17235 amad1_17240 amad1_17240 amad1_17240 3892381 3892851 - hypothetical protein COG4682 Predicted membrane protein gene gene3470 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17240 amad1_17245 amad1_17245 amad1_17245 3892862 3893671 - hypothetical protein COG4727 Uncharacterized protein conserved in bacteria gene gene3471 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17245 amad1_17250 amad1_17250 amad1_17250 3893679 3894083 - hypothetical protein gene gene3472 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17250 amad1_17255 amad1_17255 amad1_17255 3894215 3894949 + helix-turn-helix domain-containing protein gene gene3473 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17255 amad1_17260 amad1_17260 amad1_17260 3895042 3896541 - cytosine/purines uracil thiamine allantoin permease COG1953 Cytosine/uracil/thiamine/allantoin permeases gene gene3474 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17260 amad1_17265 amad1_17265 amad1_17265 3896832 3899150 - TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3475 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17265 amad1_17270 amad1_17270 amad1_17270 3899442 3900932 - methylmalonate-semialdehyde dehydrogenase COG1012 NAD-dependent aldehyde dehydrogenases gene gene3476 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17270 amad1_17275 amad1_17275 amad1_17275 3900952 3901482 - flavin reductase COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases%2C DIM6/NTAB family gene gene3477 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17275 amad1_17280 amad1_17280 amad1_17280 3901506 3902126 - malonic semialdehyde reductase COG0778 Nitroreductase gene gene3478 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17280 amad1_17285 amad1_17285 amad1_17285 3902213 3903049 - pyrimidine utilization protein D COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene3479 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17285 amad1_17290 amad1_17290 amad1_17290 3903108 3903491 - pyrimidine utilization protein C COG0251 Putative translation initiation inhibitor%2C yjgF family gene gene3480 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17290 amad1_17295 amad1_17295 amad1_17295 3903629 3904363 - pyrimidine utilization protein B COG1335 Amidases related to nicotinamidase gene gene3481 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17295 amad1_17300 amad1_17300 amad1_17300 3904363 3905451 - pyrimidine utilization protein A COG2141 Coenzyme F420-dependent N5%2CN10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases gene gene3482 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17300 amad1_17305 amad1_17305 amad1_17305 3905756 3906427 + TetR family transcriptional regulator COG1309 Transcriptional regulator gene gene3483 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17305 amad1_17310 amad1_17310 amad1_17310 3906431 3907102 - cAMP-binding protein - catabolite protein activator and regulatory subunit of cAMP-dependent protein kinase COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases gene gene3484 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17310 amad1_17315 amad1_17315 amad1_17315 3907191 3908084 + sterol desaturase COG3000 Sterol desaturase gene gene3485 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17315 amad1_17320 amad1_17320 amad1_17320 3908190 3908411 + hypothetical protein COG4628 Uncharacterized conserved protein gene gene3486 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17320 amad1_17325 amad1_17325 amad1_17325 3908461 3909351 - Zn-dependent hydrolase COG0491 Zn-dependent hydrolases%2C including glyoxylases gene gene3487 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17325 amad1_17330 amad1_17330 amad1_17330 3909415 3909663 - hypothetical protein COG4728 Uncharacterized protein conserved in bacteria gene gene3488 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17330 amad1_17335 amad1_17335 amad1_17335 3909746 3910819 - DNA polymerase IV COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair gene gene3489 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17335 amad1_17340 amad1_17340 amad1_17340 3911031 3911264 - hypothetical protein COG2991 Uncharacterized protein conserved in bacteria gene gene3490 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17340 amad1_17345 amad1_17345 amad1_17345 3911274 3912299 - thiamin biosynthesis lipoprotein ApbE COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis gene gene3491 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17345 amad1_17350 amad1_17350 amad1_17350 3912417 3913649 - Na(+)-translocating NADH-quinone reductase subunit F COG2871 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrF gene gene3492 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17350 amad1_17355 amad1_17355 amad1_17355 3913670 3914278 - Na(+)-translocating NADH-quinone reductase subunit E COG2209 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrE gene gene3493 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17355 amad1_17360 amad1_17360 amad1_17360 3914282 3914914 - Na(+)-translocating NADH-quinone reductase subunit D COG1347 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrD gene gene3494 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17360 amad1_17365 amad1_17365 amad1_17365 3914925 3915689 - Na(+)-translocating NADH-quinone reductase subunit C COG2869 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrC gene gene3495 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17365 amad1_17370 amad1_17370 amad1_17370 3915679 3916881 - Na(+)-translocating NADH-quinone reductase subunit B COG1805 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrB gene gene3496 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17370 amad1_17375 amad1_17375 amad1_17375 3916885 3918225 - Na(+)-translocating NADH-quinone reductase subunit A COG1726 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrA gene gene3497 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17375 amad1_17380 amad1_17380 amad1_17380 3918733 3919911 - trans-2-enoyl-CoA reductase COG3007 Uncharacterized paraquat-inducible protein B gene gene3498 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17380 amad1_17385 amad1_17385 amad1_17385 3920243 3920863 - FKBP-type 22KD peptidyl-prolyl cis-trans isomerase COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 gene gene3499 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17385 amad1_17390 amad1_17390 amad1_17390 3921096 3923717 + phosphoenolpyruvate carboxylase COG2352 Phosphoenolpyruvate carboxylase gene gene3500 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17390 amad1_17395 amad1_17395 amad1_17395 3923871 3924362 - catalase COG0376 Catalase (peroxidase I) gene gene3501 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17395 amad1_17400 amad1_17400 amad1_17400 3924359 3924760 - catalase/hydroperoxidase HPI(I) COG0376 Catalase (peroxidase I) gene gene3502 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17400 amad1_17405 amad1_17405 amad1_17405 3924984 3925793 + methionine sulfoxide reductase A gene gene3503 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17405 amad1_17410 amad1_17410 amad1_17410 3925984 3926922 - malate dehydrogenase COG0039 Malate/lactate dehydrogenases gene gene3504 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17410 amad1_17415 amad1_17415 amad1_17415 3927162 3927626 + arginine repressor COG1438 Arginine repressor gene gene3505 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17415 amad1_17420 amad1_17420 amad1_17420 3927711 3928394 - DJ-1/PfpI family protein COG0693 Putative intracellular protease/amidase gene gene3506 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17420 amad1_17425 amad1_17425 amad1_17425 3928587 3931760 - Outer membrane protein with a TonB box COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3507 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17425 amad1_17430 amad1_17430 amad1_17430 3932233 3933039 + hypothetical protein COG3221 ABC-type phosphate/phosphonate transport system%2C periplasmic component gene gene3508 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17430 amad1_17435 amad1_17435 amad1_17435 3933039 3933992 + hypothetical protein gene gene3509 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17435 amad1_17440 amad1_17440 amad1_17440 3934151 3934804 + uridine kinase COG0572 Uridine kinase gene gene3510 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17440 amad1_17445 amad1_17445 amad1_17445 3934817 3936028 + putative Na+ dependent nucleoside transporter COG1972 Nucleoside permease gene gene3511 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17445 amad1_17450 amad1_17450 amad1_17450 3936198 3937037 + 2OG-Fe(II) oxygenase COG3491 Isopenicillin N synthase and related dioxygenases gene gene3512 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17450 amad1_17455 amad1_17455 amad1_17455 3937103 3938260 - hypothetical protein COG0457 FOG: TPR repeat gene gene3513 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17455 amad1_17460 amad1_17460 amad1_17460 3938543 3938962 + hypothetical protein gene gene3514 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17460 amad1_17465 amad1_17465 amad1_17465 3939089 3940078 + putative response regulator COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain gene gene3515 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17465 amad1_17470 amad1_17470 amad1_17470 3940080 3940760 - putative DNA polymerase COG0847 DNA polymerase III%2C epsilon subunit and related 3'-5' exonucleases gene gene3516 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17470 amad1_17475 amad1_17475 amad1_17475 3940766 3942607 - Signaling protein COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains gene gene3517 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17475 amad1_17480 amad1_17480 amad1_17480 3942711 3944417 - Na+/solute symporter COG4147 Predicted symporter gene gene3518 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17480 amad1_17485 amad1_17485 amad1_17485 3944421 3944687 - hypothetical protein COG4327 Predicted membrane protein gene gene3519 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17485 amad1_17490 amad1_17490 amad1_17490 3944945 3948388 + hypothetical protein COG0591 Na+/proline symporter gene gene3520 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17490 amad1_17495 amad1_17495 amad1_17495 3948418 3949041 - hypothetical protein COG0668 Small-conductance mechanosensitive channel gene gene3521 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17495 amad1_17500 amad1_17500 amad1_17500 3949417 3950259 + ribosomal protein S6 modification protein COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) gene gene3522 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17500 amad1_17505 amad1_17505 amad1_17505 3950370 3951401 + succinylglutamate desuccinylase/aspartoacylase COG3608 Predicted deacylase gene gene3523 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17505 amad1_17510 amad1_17510 amad1_17510 3951419 3951853 + aspartyl protease COG4067 Uncharacterized protein conserved in archaea gene gene3524 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17510 amad1_17515 amad1_17515 amad1_17515 3951922 3952893 + amino acid ABC transporter substrate-binding protein gene gene3525 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17515 amad1_17520 amad1_17520 amad1_17520 3952853 3953497 - putative regulator in two-component regulatory system COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene3526 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17520 amad1_17525 amad1_17525 amad1_17525 3953515 3955461 - acetyl-coenzyme A synthetase COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases gene gene3527 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17525 amad1_17530 amad1_17530 amad1_17530 3955720 3956883 + hypothetical protein COG2238 Ribosomal protein S19E (S16A) gene gene3528 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17530 amad1_17535 amad1_17535 amad1_17535 3956948 3958111 - nptA protein COG1283 Na+/phosphate symporter gene gene3529 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17535 amad1_17540 amad1_17540 amad1_17540 3958210 3959262 - putative NADPH-dependent aldose reductase COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) gene gene3530 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17540 amad1_17545 amad1_17545 amad1_17545 3959321 3960385 - methyl-accepting chemotaxis sensory transducer gene gene3531 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17545 amad1_17550 amad1_17550 amad1_17550 3961155 3962507 - hypothetical protein COG3211 Predicted phosphatase gene gene3532 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17550 amad1_17555 amad1_17555 amad1_17555 3962681 3965239 - sensory box/GGDEF/EAL domain protein COG2202 FOG: PAS/PAC domain gene gene3533 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17555 amad1_17560 amad1_17560 amad1_17560 3965620 3965802 + hypothetical protein gene gene3534 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17560 amad1_17565 amad1_17565 amad1_17565 3965794 3966978 - elongation factor Tu COG0050 GTPases - translation elongation factors gene gene3535 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17565 amad1_17570 amad1_17570 amad1_17570 3967514 3968272 - putative Baf family transcriptional acitvator COG1521 Putative transcriptional regulator%2C homolog of Bvg accessory factor gene gene3540 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17570 amad1_17575 amad1_17575 amad1_17575 3968410 3969396 - putative BirA bifunctional protein COG1654 Biotin operon repressor gene gene3541 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17575 amad1_17580 amad1_17580 amad1_17580 3969393 3970475 - UDP-N-acetylenolpyruvoylglucosamine reductase COG0812 UDP-N-acetylmuramate dehydrogenase gene gene3542 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17580 amad1_17585 amad1_17585 amad1_17585 3970568 3972145 - methyl-accepting chemotaxis protein COG0840 Methyl-accepting chemotaxis protein gene gene3543 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17585 amad1_17590 amad1_17590 amad1_17590 3972863 3972979 - hypothetical protein gene gene3544 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17590 amad1_17595 amad1_17595 amad1_17595 3979209 3980021 - hypothetical protein gene gene3548 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17595 amad1_17600 amad1_17600 amad1_17600 3980210 3981640 - outer membrane component of multidrug efflux pump COG1538 Outer membrane protein gene gene3549 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17600 amad1_17605 amad1_17605 amad1_17605 3981634 3982686 - membrane fusion protein COG0845 Membrane-fusion protein gene gene3550 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17605 amad1_17610 amad1_17610 amad1_17610 3982687 3984405 - toxin secretion ABC transporter ATP-binding protein COG1132 ABC-type multidrug transport system%2C ATPase and permease components gene gene3551 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17610 amad1_17615 amad1_17615 amad1_17615 3984609 3985499 + LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene3552 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17615 amad1_17620 amad1_17620 amad1_17620 3985879 3986109 + prevent-host-death family protein COG4118 Antitoxin of toxin-antitoxin stability system gene gene3553 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17620 amad1_17625 amad1_17625 amad1_17625 3986152 3986496 + PilT domain-containing protein COG3744 Uncharacterized protein conserved in bacteria gene gene3554 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17625 amad1_17630 amad1_17630 amad1_17630 3986588 3987994 + mannose-1-phosphate guanylyltransferase COG0836 Mannose-1-phosphate guanylyltransferase gene gene3555 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17630 amad1_17635 amad1_17635 amad1_17635 3988100 3989275 - nucleotide sugar dehydrogenase COG1004 Predicted UDP-glucose 6-dehydrogenase gene gene3556 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17635 amad1_17640 amad1_17640 amad1_17640 3989332 3991050 - glycosyl transferase family protein COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene3557 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17640 amad1_17645 amad1_17645 amad1_17645 3991148 3992230 - dTDP-glucose 4%2C6 dehydratase COG1088 dTDP-D-glucose 4%2C6-dehydratase gene gene3558 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17645 amad1_17650 amad1_17650 amad1_17650 3992268 3993137 - dTDP-4-dehydrorhamnose reductase COG1091 dTDP-4-dehydrorhamnose reductase gene gene3559 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17650 amad1_17655 amad1_17655 amad1_17655 3993159 3993704 - dTDP-4-keto-6-deoxy-D-glucose-3%2C6-epimerase COG1898 dTDP-4-dehydrorhamnose 3%2C5-epimerase and related enzymes gene gene3560 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17655 amad1_17660 amad1_17660 amad1_17660 3993732 3994610 - glucose-1-phosphate thymidylyltransferase COG1209 dTDP-glucose pyrophosphorylase gene gene3561 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17660 amad1_17665 amad1_17665 amad1_17665 3994771 3995808 + hypothetical protein gene gene3562 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17665 amad1_17670 amad1_17670 amad1_17670 3996290 4002124 - hypothetical protein gene gene3563 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17670 amad1_17675 amad1_17675 amad1_17675 4002462 4004369 + hypothetical protein gene gene3564 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17675 amad1_17680 amad1_17680 amad1_17680 4004363 4005466 - hypothetical protein gene gene3565 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17680 amad1_17685 amad1_17685 amad1_17685 4005471 4006706 - group 1 glycosyl transferase COG0438 Glycosyltransferase gene gene3566 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17685 amad1_17690 amad1_17690 amad1_17690 4006699 4008432 - glycosyl transferase family protein COG1216 Predicted glycosyltransferases gene gene3567 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17690 amad1_17695 amad1_17695 amad1_17695 4008461 4009834 - methyltransferase type 11 COG0500 SAM-dependent methyltransferases gene gene3568 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17695 amad1_17700 amad1_17700 amad1_17700 4009851 4010024 - hypothetical protein gene gene3569 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17700 amad1_17705 amad1_17705 amad1_17705 4010044 4010976 - hypothetical protein gene gene3570 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17705 amad1_17710 amad1_17710 amad1_17710 4010979 4011629 - hypothetical protein COG0110 Acetyltransferase (isoleucine patch superfamily) gene gene3571 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17710 amad1_17715 amad1_17715 amad1_17715 4011632 4012687 - bifunctional methyltransferase/glycosyl transferase COG0438 Glycosyltransferase gene gene3572 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17715 amad1_17720 amad1_17720 amad1_17720 4012704 4015217 - bifunctional methyltransferase/glycosyl transferase COG1216 Predicted glycosyltransferases gene gene3573 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17720 amad1_17725 amad1_17725 amad1_17725 4015695 4015889 + hypothetical protein gene gene3574 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17725 amad1_17730 amad1_17730 amad1_17730 4015925 4016758 + hypothetical protein gene gene3575 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17730 amad1_17735 amad1_17735 amad1_17735 4016755 4018533 + peptidase S8/S53 subtilisin kexin sedolisin COG1572 Uncharacterized conserved protein gene gene3576 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17735 amad1_17740 amad1_17740 amad1_17740 4018499 4019362 + hypothetical protein COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases gene gene3577 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17740 amad1_17745 amad1_17745 amad1_17745 4019347 4020153 + hypothetical protein gene gene3578 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17745 amad1_17750 amad1_17750 amad1_17750 4020223 4023585 - hypothetical protein gene gene3579 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17750 amad1_17755 amad1_17755 amad1_17755 4024249 4025865 - hypothetical protein gene gene3580 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17755 amad1_17760 amad1_17760 amad1_17760 4025879 4027405 - hypothetical protein gene gene3581 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17760 amad1_17765 amad1_17765 amad1_17765 4028168 4030333 + hypothetical protein gene gene3582 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17765 amad1_17770 amad1_17770 amad1_17770 4030916 4031884 + hypothetical protein gene gene3583 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17770 amad1_17775 amad1_17775 amad1_17775 4031950 4035615 - hypothetical protein gene gene3584 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17775 amad1_17780 amad1_17780 amad1_17780 4035628 4036266 - hypothetical protein gene gene3585 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17780 amad1_17785 amad1_17785 amad1_17785 4036479 4039388 - hypothetical protein gene gene3586 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17785 amad1_17790 amad1_17790 amad1_17790 4039480 4044168 - hypothetical protein COG4886 Leucine-rich repeat (LRR) protein gene gene3587 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17790 amad1_17795 amad1_17795 amad1_17795 4044193 4044570 - hypothetical protein gene gene3588 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17795 amad1_17800 amad1_17800 amad1_17800 4044689 4044943 - transposase%2C IS4 family protein gene gene3589 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17800 amad1_17805 amad1_17805 amad1_17805 4045044 4046453 + transposase-like protein COG3436 Transposase and inactivated derivatives gene gene3590 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17805 amad1_17810 amad1_17810 amad1_17810 4046434 4047696 - transposase%2C IS4 family protein COG5421 Transposase gene gene3591 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17810 amad1_17815 amad1_17815 amad1_17815 4047845 4048159 + hypothetical protein gene gene3592 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17815 amad1_17820 amad1_17820 amad1_17820 4048156 4048524 + IS66 Orf2 family protein COG3436 Transposase and inactivated derivatives gene gene3593 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17820 amad1_17825 amad1_17825 amad1_17825 4048559 4050223 + IS66 family element%2C transposase COG3436 Transposase and inactivated derivatives gene gene3594 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17825 amad1_17830 amad1_17830 amad1_17830 4050735 4051412 - hypothetical protein gene gene3595 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17830 amad1_17835 amad1_17835 amad1_17835 4051416 4052636 - hypothetical protein COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene3596 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17835 amad1_17840 amad1_17840 amad1_17840 4052645 4053706 - hypothetical protein COG4421 Capsular polysaccharide biosynthesis protein gene gene3597 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17840 amad1_17845 amad1_17845 amad1_17845 4053716 4054897 - hypothetical protein COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene3598 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17845 amad1_17850 amad1_17850 amad1_17850 4054897 4055946 - hypothetical protein gene gene3599 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17850 amad1_17855 amad1_17855 amad1_17855 4055954 4057870 - hypothetical protein COG3754 Lipopolysaccharide biosynthesis protein gene gene3600 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17855 amad1_17860 amad1_17860 amad1_17860 4057872 4058921 - HAD superfamily hydrolase-like protein COG5610 Predicted hydrolase (HAD superfamily) gene gene3601 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17860 amad1_17865 amad1_17865 amad1_17865 4059431 4060780 - putative flagellin COG1344 Flagellin and related hook-associated proteins gene gene3602 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17865 amad1_17870 amad1_17870 amad1_17870 4061074 4061337 - Txe/YoeB family addiction module toxin COG4115 Uncharacterized protein conserved in bacteria gene gene3603 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17870 amad1_17875 amad1_17875 amad1_17875 4061334 4061576 - Prevent-host-death family protein COG2161 Antitoxin of toxin-antitoxin stability system gene gene3604 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17875 amad1_17880 amad1_17880 rplQ rplQ 4061745 4062146 - 50S ribosomal protein L17 COG0203 Ribosomal protein L17 gene gene3605 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17880 amad1_17885 amad1_17885 amad1_17885 4062188 4063174 - DNA-directed RNA polymerase subunit alpha COG0202 DNA-directed RNA polymerase%2C alpha subunit/40 kD subunit gene gene3606 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17885 amad1_17890 amad1_17890 rpsD rpsD 4063197 4063817 - 30S ribosomal protein S4 COG0522 Ribosomal protein S4 and related proteins gene gene3607 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17890 amad1_17895 amad1_17895 amad1_17895 4063842 4064234 - 30S ribosomal protein S11 COG0100 Ribosomal protein S11 gene gene3608 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17895 amad1_17900 amad1_17900 rpsM rpsM 4064249 4064605 - 30S ribosomal protein S13 COG0099 Ribosomal protein S13 gene gene3609 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17900 amad1_17905 amad1_17905 rpmJ rpmJ 4064781 4064897 - 50S ribosomal protein L36 COG0257 Ribosomal protein L36 gene gene3610 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17905 amad1_17910 amad1_17910 secY secY 4064936 4066255 - preprotein translocase subunit SecY COG0201 Preprotein translocase subunit SecY gene gene3611 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17910 amad1_17915 amad1_17915 amad1_17915 4066261 4066695 - 50S ribosomal protein L15 COG0200 Ribosomal protein L15 gene gene3612 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17915 amad1_17920 amad1_17920 amad1_17920 4066699 4066878 - 50S ribosomal protein L30 COG1841 Ribosomal protein L30/L7E gene gene3613 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17920 amad1_17925 amad1_17925 rpsE rpsE 4066885 4067385 - 30S ribosomal protein S5 COG0098 Ribosomal protein S5 gene gene3614 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17925 amad1_17930 amad1_17930 rplR rplR 4067395 4067748 - 50S ribosomal protein L18 COG0256 Ribosomal protein L18 gene gene3615 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17930 amad1_17935 amad1_17935 rplF rplF 4067761 4068294 - 50S ribosomal protein L6 COG0097 Ribosomal protein L6P/L9E gene gene3616 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17935 amad1_17940 amad1_17940 rpsH rpsH 4068308 4068700 - 30S ribosomal protein S8 COG0096 Ribosomal protein S8 gene gene3617 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17940 amad1_17945 amad1_17945 rpsN rpsN 4068714 4069019 - 30S ribosomal protein S14 COG0199 Ribosomal protein S14 gene gene3618 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17945 amad1_17950 amad1_17950 rplE rplE 4069032 4069571 - 50S ribosomal protein L5 COG0094 Ribosomal protein L5 gene gene3619 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17950 amad1_17955 amad1_17955 rplX rplX 4069589 4069903 - 50S ribosomal protein L24 COG0198 Ribosomal protein L24 gene gene3620 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17955 amad1_17960 amad1_17960 amad1_17960 4069916 4070284 - 50S ribosomal protein L14 COG0093 Ribosomal protein L14 gene gene3621 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17960 amad1_17965 amad1_17965 amad1_17965 4070505 4072613 - GAF sensor hybrid histidine kinase COG0642 Signal transduction histidine kinase gene gene3622 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17965 amad1_17970 amad1_17970 amad1_17970 4072745 4074139 - hypothetical protein gene gene3623 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17970 amad1_17975 amad1_17975 amad1_17975 4074421 4076088 - cold-active serine alkaline protease COG1404 Subtilisin-like serine proteases gene gene3624 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17975 amad1_17980 amad1_17980 amad1_17980 4076893 4077537 + hypothetical protein COG0457 FOG: TPR repeat gene gene3625 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17980 amad1_17985 amad1_17985 amad1_17985 4077760 4078500 - 23S rRNA (guanosine-2'-O-)-methyltransferase COG0566 rRNA methylases gene gene3626 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17985 amad1_17990 amad1_17990 amad1_17990 4078501 4080918 - ribonuclease R COG0557 Exoribonuclease R gene gene3627 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17990 amad1_17995 amad1_17995 amad1_17995 4081359 4081718 - XRE family transcriptional regulator COG3093 Plasmid maintenance system antidote protein gene gene3628 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_17995 amad1_18000 amad1_18000 amad1_18000 4081715 4082002 - hypothetical protein gene gene3629 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18000 amad1_18005 amad1_18005 amad1_18005 4082240 4083934 + Phosphodiesterase/alkaline phosphatase D COG3540 Phosphodiesterase/alkaline phosphatase D gene gene3630 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18005 amad1_18010 amad1_18010 amad1_18010 4084060 4084356 - RelE/StbE family addiction module toxin COG3668 Plasmid stabilization system protein gene gene3631 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18010 amad1_18015 amad1_18015 amad1_18015 4084337 4084585 - CopG family transcriptional regulator COG3905 Predicted transcriptional regulator gene gene3632 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18015 amad1_18020 amad1_18020 amad1_18020 4084818 4087181 - Outer membrane protein COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3633 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18020 amad1_18025 amad1_18025 amad1_18025 4087543 4087824 + hypothetical protein COG5591 Uncharacterized conserved protein gene gene3634 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18025 amad1_18030 amad1_18030 amad1_18030 4087923 4088492 + Cytochrome b561 family protein COG3658 Cytochrome b gene gene3635 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18030 amad1_18035 amad1_18035 amad1_18035 4088606 4089250 - sodium-type flagellar motor component COG0790 FOG: TPR repeat%2C SEL1 subfamily gene gene3636 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18035 amad1_18040 amad1_18040 amad1_18040 4089427 4089678 - hypothetical protein gene gene3637 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18040 amad1_18045 amad1_18045 amad1_18045 4089869 4091335 + 3-octaprenyl-4-hydroxybenzoate carboxylyase COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases gene gene3638 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18045 amad1_18050 amad1_18050 fre fre 4091435 4092130 + FMN reductase COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases gene gene3639 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18050 amad1_18055 amad1_18055 amad1_18055 4092193 4092633 - PilT-like protein COG5611 Predicted nucleic-acid-binding protein%2C contains PIN domain gene gene3640 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18055 amad1_18060 amad1_18060 amad1_18060 4092630 4092851 - hypothetical protein COG2002 Regulators of stationary/sporulation gene expression gene gene3641 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18060 amad1_18065 amad1_18065 amad1_18065 4093034 4094440 + aminopeptidase COG2234 Predicted aminopeptidases gene gene3642 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18065 amad1_18070 amad1_18070 amad1_18070 4094600 4095625 + hypothetical protein COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene3643 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18070 amad1_18075 amad1_18075 amad1_18075 4095650 4098376 - Multi-sensor Signal Transduction Histidine Kinase COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) gene gene3644 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18075 amad1_18080 amad1_18080 amad1_18080 4098603 4099160 + Helix-turn-helix%2C type 11 COG1510 Predicted transcriptional regulators gene gene3645 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18080 amad1_18085 amad1_18085 amad1_18085 4099172 4100545 + quinol oxidase subunit I COG1271 Cytochrome bd-type quinol oxidase%2C subunit 1 gene gene3646 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18085 amad1_18090 amad1_18090 amad1_18090 4100557 4101564 + quinol oxidase subunit II COG1294 Cytochrome bd-type quinol oxidase%2C subunit 2 gene gene3647 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18090 amad1_18095 amad1_18095 amad1_18095 4101987 4102151 + hypothetical protein COG0364 Glucose-6-phosphate 1-dehydrogenase gene gene3648 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18095 amad1_18100 amad1_18100 amad1_18100 4102210 4102692 - regulatory protein%2C AsnC/Lrp COG1522 Transcriptional regulators gene gene3649 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18100 amad1_18105 amad1_18105 amad1_18105 4102810 4103454 - hypothetical protein gene gene3650 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18105 amad1_18110 amad1_18110 amad1_18110 4103718 4103927 - putative cold shock-like protein cspG COG1278 Cold shock proteins gene gene3651 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18110 amad1_18115 amad1_18115 amad1_18115 4104222 4105850 - protein kinase COG0661 Predicted unusual protein kinase gene gene3652 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18115 amad1_18120 amad1_18120 amad1_18120 4105874 4106509 - hypothetical protein COG3165 Uncharacterized protein conserved in bacteria gene gene3653 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18120 amad1_18125 amad1_18125 amad1_18125 4106509 4107294 - ubiquinone/menaquinone biosynthesis methyltransferase COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis gene gene3654 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18125 amad1_18130 amad1_18130 amad1_18130 4107409 4108110 - 3-methyl-adenine DNA glycosylase COG2818 3-methyladenine DNA glycosylase gene gene3655 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18130 amad1_18135 amad1_18135 amad1_18135 4108117 4110153 - oligopeptidase A COG0339 Zn-dependent oligopeptidases gene gene3656 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18135 amad1_18140 amad1_18140 amad1_18140 4110457 4111017 + response regulator COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene3657 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18140 amad1_18145 amad1_18145 amad1_18145 4111039 4111863 + phosphate/phosphonate ABC transporter periplasmic protein COG3221 ABC-type phosphate/phosphonate transport system%2C periplasmic component gene gene3658 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18145 amad1_18150 amad1_18150 amad1_18150 4111875 4113548 + Signal transduction histidine kinase COG0642 Signal transduction histidine kinase gene gene3659 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18150 amad1_18155 amad1_18155 amad1_18155 4113622 4114926 + response regulator COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain gene gene3660 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18155 amad1_18160 amad1_18160 amad1_18160 4115178 4116527 + glutathione reductase COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes gene gene3661 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18160 amad1_18165 amad1_18165 amad1_18165 4116662 4118851 - anaerobic dehydrogenase COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing gene gene3662 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18165 amad1_18170 amad1_18170 amad1_18170 4119111 4122446 + amidohydrolase COG0823 Periplasmic component of the Tol biopolymer transport system gene gene3663 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18170 amad1_18175 amad1_18175 amad1_18175 4122670 4123221 + hypothetical protein gene gene3664 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18175 amad1_18180 amad1_18180 amad1_18180 4123243 4124499 + lipoprotein gene gene3665 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18180 amad1_18185 amad1_18185 amad1_18185 4124563 4126023 + hypothetical protein COG0457 FOG: TPR repeat gene gene3666 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18185 amad1_18190 amad1_18190 amad1_18190 4126035 4128017 + hypothetical protein COG1262 Uncharacterized conserved protein gene gene3667 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18190 amad1_18195 amad1_18195 amad1_18195 4128019 4128126 + hypothetical protein gene gene3668 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18195 amad1_18200 amad1_18200 amad1_18200 4128143 4128913 + biopolymer transport protein%2C ExbB family gene gene3669 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18200 amad1_18205 amad1_18205 amad1_18205 4128929 4129987 + Secreted protein%2C containing von Willebrand factor (vWF) type A domain gene gene3670 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18205 amad1_18210 amad1_18210 amad1_18210 4130001 4130951 + Secreted protein%2C containing von Willebrand factor (vWF) type A domain gene gene3671 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18210 amad1_18215 amad1_18215 amad1_18215 4131029 4132573 - Hydroxymethylglutaryl-coenzyme A reductase COG1257 Hydroxymethylglutaryl-CoA reductase gene gene3672 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18215 amad1_18220 amad1_18220 amad1_18220 4133028 4134281 + membrane-fusion protein COG0845 Membrane-fusion protein gene gene3673 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18220 amad1_18225 amad1_18225 amad1_18225 4134281 4136455 + toxin secretion ABC transporter ATP-binding subunit/permease COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain an N-terminal double-glycine peptidase domain gene gene3674 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18225 amad1_18230 amad1_18230 amad1_18230 4136452 4136763 + putative transcriptional regulator COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene3675 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18230 amad1_18235 amad1_18235 amad1_18235 4136811 4137041 + hypothetical protein gene gene3676 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18235 amad1_18240 amad1_18240 amad1_18240 4137160 4138161 + hypothetical protein COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) gene gene3677 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18240 amad1_18245 amad1_18245 amad1_18245 4138370 4138699 + regulator PrlF COG2002 Regulators of stationary/sporulation gene expression gene gene3678 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18245 amad1_18250 amad1_18250 amad1_18250 4138702 4139175 + hypothetical protein gene gene3679 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18250 amad1_18255 amad1_18255 hslU hslU 4139368 4140696 - ATP-dependent protease ATP-binding subunit HslU COG1220 ATP-dependent protease HslVU (ClpYQ)%2C ATPase subunit gene gene3680 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18255 amad1_18260 amad1_18260 amad1_18260 4140779 4141303 - ATP-dependent protease subunit HslV COG5405 ATP-dependent protease HslVU (ClpYQ)%2C peptidase subunit gene gene3681 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18260 amad1_18265 amad1_18265 amad1_18265 4141631 4142209 - Sporulation related protein COG3087 Cell division protein gene gene3682 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18265 amad1_18270 amad1_18270 amad1_18270 4142342 4144531 - primosome assembly protein PriA COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase gene gene3683 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18270 amad1_18275 amad1_18275 amad1_18275 4144886 4145098 + 50S ribosomal subunit protein L31 COG0254 Ribosomal protein L31 gene gene3684 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18275 amad1_18280 amad1_18280 amad1_18280 4145266 4145583 - hypothetical protein gene gene3685 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18280 amad1_18285 amad1_18285 amad1_18285 4146134 4147369 + NADP-dependent malic enzyme COG0281 Malic enzyme gene gene3686 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18285 amad1_18290 amad1_18290 amad1_18290 4147543 4147875 - transcriptional repressor protein MetJ COG3060 Transcriptional regulator of met regulon gene gene3687 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18290 amad1_18295 amad1_18295 amad1_18295 4148037 4148924 + 5%2C10-methylenetetrahydrofolate reductase COG0685 5%2C10-methylenetetrahydrofolate reductase gene gene3688 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18295 amad1_18300 amad1_18300 amad1_18300 4149163 4150047 + hypothetical protein COG1295 Predicted membrane protein gene gene3689 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18300 amad1_18305 amad1_18305 amad1_18305 4150258 4150896 - glutamine synthetase gene gene3690 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18305 amad1_18310 amad1_18310 amad1_18310 4150893 4151135 - hypothetical protein gene gene3691 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18310 amad1_18315 amad1_18315 amad1_18315 4151317 4152294 + proline iminopeptidase COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene3692 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18315 amad1_18320 amad1_18320 amad1_18320 4152291 4152728 + D-tyrosyl-tRNA(Tyr) deacylase COG1490 D-Tyr-tRNAtyr deacylase gene gene3693 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18320 amad1_18325 amad1_18325 amad1_18325 4152934 4153848 + GNAT family acetyltransferase COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene3694 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18325 amad1_18330 amad1_18330 amad1_18330 4153947 4154801 - RNA polymerase sigma factor COG0568 DNA-directed RNA polymerase%2C sigma subunit (sigma70/sigma32) gene gene3695 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18330 amad1_18335 amad1_18335 amad1_18335 4155418 4156644 + EAL domain-containing protein COG3434 Predicted signal transduction protein containing EAL and modified HD-GYP domains gene gene3696 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18335 amad1_18340 amad1_18340 amad1_18340 4156799 4158034 + diguanylate phosphodiesterase COG3434 Predicted signal transduction protein containing EAL and modified HD-GYP domains gene gene3697 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18340 amad1_18345 amad1_18345 amad1_18345 4158048 4159028 - cell division protein COG2177 Cell division protein gene gene3698 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18345 amad1_18350 amad1_18350 amad1_18350 4159025 4159729 - protein FtsE COG2884 Predicted ATPase involved in cell division gene gene3699 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18350 amad1_18355 amad1_18355 amad1_18355 4159756 4161399 - signal recognition particle GTPase COG0552 Signal recognition particle GTPase gene gene3700 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18355 amad1_18360 amad1_18360 amad1_18360 4161487 4162137 + putative methyltransferase COG0742 N6-adenine-specific methylase gene gene3701 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18360 amad1_18365 amad1_18365 amad1_18365 4162226 4162804 - hypothetical protein COG3068 Uncharacterized protein conserved in bacteria gene gene3702 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18365 amad1_18370 amad1_18370 amad1_18370 4162805 4163407 - multiple antibiotic resistance (MarC)-like protein COG2095 Multiple antibiotic transporter gene gene3703 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18370 amad1_18375 amad1_18375 amad1_18375 4163864 4164046 + hypothetical protein gene gene3704 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18375 amad1_18380 amad1_18380 amad1_18380 4164176 4165456 - aminopeptidase B COG0260 Leucyl aminopeptidase gene gene3705 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18380 amad1_18385 amad1_18385 amad1_18385 4165690 4166406 + sugar fermentation stimulation protein COG1489 DNA-binding protein%2C stimulates sugar fermentation gene gene3706 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18385 amad1_18390 amad1_18390 amad1_18390 4166627 4167076 + putative DnaK suppressor protein COG1734 DnaK suppressor protein gene gene3707 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18390 amad1_18395 amad1_18395 amad1_18395 4167152 4168135 + putative glutamyl-tRNA synthetase-relatedprotein COG0008 Glutamyl- and glutaminyl-tRNA synthetases gene gene3708 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18395 amad1_18400 amad1_18400 amad1_18400 4168234 4169553 + poly(A) polymerase I COG0617 tRNA nucleotidyltransferase/poly(A) polymerase gene gene3709 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18400 amad1_18405 amad1_18405 amad1_18405 4169546 4170043 + 7%2C8-dihydro-6-hydroxymethylpterin- pyrophosphokinase COG0801 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase gene gene3710 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18405 amad1_18410 amad1_18410 panB panB 4170102 4170896 + 3-methyl-2-oxobutanoate hydroxymethyltransferase COG0413 Ketopantoate hydroxymethyltransferase gene gene3711 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18410 amad1_18415 amad1_18415 amad1_18415 4170908 4171756 + pantothenate synthetase COG0414 Panthothenate synthetase gene gene3712 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18415 amad1_18420 amad1_18420 amad1_18420 4171965 4173599 - Glutamate decarboxylase putative COG0076 Glutamate decarboxylase and related PLP-dependent proteins gene gene3713 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18420 amad1_18435 amad1_18435 amad1_18435 4174973 4175641 - putative methyltransferase SAM dependent COG0220 Predicted S-adenosylmethionine-dependent methyltransferase gene gene3714 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18435 amad1_18440 amad1_18440 amad1_18440 4175641 4176456 - inner membrane transport permease COG0842 ABC-type multidrug transport system%2C permease component gene gene3715 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18440 amad1_18445 amad1_18445 amad1_18445 4176483 4177415 - ABC transporter ATP-binding protein COG1131 ABC-type multidrug transport system%2C ATPase component gene gene3716 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18445 amad1_18450 amad1_18450 amad1_18450 4178076 4178765 + two component transcriptional regulator%2C winged helix family protein COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene3717 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18450 amad1_18455 amad1_18455 amad1_18455 4178878 4181046 + putative sensor histidine kinase COG0642 Signal transduction histidine kinase gene gene3718 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18455 amad1_18460 amad1_18460 amad1_18460 4181308 4183614 + putative outer membrane receptor for iron transport COG4774 Outer membrane receptor for monomeric catechols gene gene3719 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18460 amad1_18465 amad1_18465 amad1_18465 4183687 4184367 + putative hydroxylase COG3128 Uncharacterized iron-regulated protein gene gene3720 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18465 amad1_18470 amad1_18470 amad1_18470 4184821 4185477 + putative secreted protein COG3794 Plastocyanin gene gene3721 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18470 amad1_18475 amad1_18475 amad1_18475 4185531 4186709 - TonB domain-containing protein COG0810 Periplasmic protein TonB%2C links inner and outer membranes gene gene3722 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18475 amad1_18480 amad1_18480 amad1_18480 4186762 4187844 - hypothetical protein COG1253 Hemolysins and related proteins containing CBS domains gene gene3723 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18480 amad1_18485 amad1_18485 amad1_18485 4187994 4189169 - permease COG0701 Predicted permeases gene gene3724 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18485 amad1_18490 amad1_18490 amad1_18490 4189424 4191109 - carbon starvation protein CstA COG1966 Carbon starvation protein%2C predicted membrane protein gene gene3725 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18490 amad1_18495 amad1_18495 amad1_18495 4191387 4191905 + membrane protein COG3182 Uncharacterized iron-regulated membrane protein gene gene3726 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18495 amad1_18500 amad1_18500 amad1_18500 4191956 4192996 - esterase COG0657 Esterase/lipase gene gene3727 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18500 amad1_18505 amad1_18505 amad1_18505 4193313 4194200 + GumN protein COG3735 Uncharacterized protein conserved in bacteria gene gene3728 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18505 amad1_18510 amad1_18510 amad1_18510 4194815 4195999 - elongation factor Tu COG0050 GTPases - translation elongation factors gene gene3729 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18510 amad1_18515 amad1_18515 amad1_18515 4196063 4198165 - translation elongation factor G COG0480 Translation elongation factors (GTPases) gene gene3730 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18515 amad1_18520 amad1_18520 amad1_18520 4198193 4198663 - 30S ribosomal protein S7 COG0049 Ribosomal protein S7 gene gene3731 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18520 amad1_18525 amad1_18525 amad1_18525 4198739 4199113 - 30S ribosomal protein S12 COG0048 Ribosomal protein S12 gene gene3732 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18525 amad1_18530 amad1_18530 amad1_18530 4199423 4203595 - DNA-directed RNA polymerase subunit beta' COG0086 DNA-directed RNA polymerase%2C beta' subunit/160 kD subunit gene gene3733 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18530 amad1_18535 amad1_18535 rpoB rpoB 4203677 4207705 - DNA-directed RNA polymerase subunit beta COG0085 DNA-directed RNA polymerase%2C beta subunit/140 kD subunit gene gene3734 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18535 amad1_18540 amad1_18540 amad1_18540 4208031 4208408 - 50S ribosomal protein L7/L12 COG0222 Ribosomal protein L7/L12 gene gene3735 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18540 amad1_18545 amad1_18545 amad1_18545 4208466 4208984 - 50S ribosomal protein L10 COG0244 Ribosomal protein L10 gene gene3736 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18545 amad1_18550 amad1_18550 rplA rplA 4209291 4209986 - 50S ribosomal protein L1 COG0081 Ribosomal protein L1 gene gene3737 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18550 amad1_18555 amad1_18555 amad1_18555 4209991 4210419 - 50S ribosomal protein L11 COG0080 Ribosomal protein L11 gene gene3738 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18555 amad1_18560 amad1_18560 amad1_18560 4210660 4210875 + hypothetical protein gene gene3739 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18560 amad1_18565 amad1_18565 amad1_18565 4210865 4211110 + hypothetical protein gene gene3740 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18565 amad1_18570 amad1_18570 amad1_18570 4211111 4211455 + hypothetical protein gene gene3741 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18570 amad1_18575 amad1_18575 amad1_18575 4211740 4212291 - transcription termination/antitermination factor NusG COG0250 Transcription antiterminator gene gene3742 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18575 amad1_18580 amad1_18580 amad1_18580 4212296 4212673 - Preprotein translocase subunit SecE COG0690 Preprotein translocase subunit SecE gene gene3743 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18580 amad1_18585 amad1_18585 amad1_18585 4212998 4214839 - multidrug resistance ABC transporter ATP-binding protein/permease COG1132 ABC-type multidrug transport system%2C ATPase and permease components gene gene3745 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18585 amad1_18590 amad1_18590 amad1_18590 4215097 4215720 - dimethylmenaquinone methyltransferase COG0684 Demethylmenaquinone methyltransferase gene gene3746 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18590 amad1_18595 amad1_18595 amad1_18595 4215984 4218050 + metalloendopeptidase PepO COG3590 Predicted metalloendopeptidase gene gene3747 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18595 amad1_18600 amad1_18600 amad1_18600 4218231 4218629 - hypothetical protein COG3602 Uncharacterized protein conserved in bacteria gene gene3748 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18600 amad1_18605 amad1_18605 amad1_18605 4218665 4220044 - ATP-dependent RNA helicase DbpA COG0513 Superfamily II DNA and RNA helicases gene gene3749 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18605 amad1_18610 amad1_18610 amad1_18610 4220165 4221211 - dihydroorotase COG0418 Dihydroorotase gene gene3750 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18610 amad1_18615 amad1_18615 amad1_18615 4221308 4221850 - lipoprotein Blc COG3040 Bacterial lipocalin gene gene3751 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18615 amad1_18620 amad1_18620 amad1_18620 4222104 4223054 + aldo/keto reductase family oxidoreductase COG4989 Predicted oxidoreductase gene gene3752 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18620 amad1_18625 amad1_18625 amad1_18625 4223085 4223468 + glyoxylase I family protein COG0346 Lactoylglutathione lyase and related lyases gene gene3753 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18625 amad1_18630 amad1_18630 amad1_18630 4223568 4224383 - mechanosensitive ion channel family protein COG0668 Small-conductance mechanosensitive channel gene gene3754 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18630 amad1_18635 amad1_18635 amad1_18635 4224525 4225742 - major facilitator transporter COG0738 Fucose permease gene gene3755 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18635 amad1_18640 amad1_18640 amad1_18640 4226042 4227991 + alpha amylase COG0366 Glycosidases gene gene3756 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18640 amad1_18645 amad1_18645 amad1_18645 4228353 4228595 + hypothetical protein gene gene3757 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18645 amad1_18650 amad1_18650 folE folE 4228674 4229357 - GTP cyclohydrolase I COG0302 GTP cyclohydrolase I gene gene3758 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18650 amad1_18655 amad1_18655 amad1_18655 4229521 4230228 + alternative dihydrofolate reductase COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene3759 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18655 amad1_18660 amad1_18660 amad1_18660 4230367 4231431 + peptidyl-arginine deiminase COG2957 Peptidylarginine deiminase and related enzymes gene gene3760 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18660 amad1_18665 amad1_18665 amad1_18665 4231418 4232311 + glycoside hydrolase family protein COG0388 Predicted amidohydrolase gene gene3761 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18665 amad1_18670 amad1_18670 amad1_18670 4232478 4233674 - transposase%2C IS4 family protein gene gene3762 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18670 amad1_18675 amad1_18675 amad1_18675 4233815 4234519 - metallophosphoesterase COG1407 Predicted ICC-like phosphoesterases gene gene3763 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18675 amad1_18680 amad1_18680 amad1_18680 4234707 4237313 - ATP-dependent RNA helicase COG1201 Lhr-like helicases gene gene3764 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18680 amad1_18685 amad1_18685 amad1_18685 4237474 4238490 + RNA procession exonuclease-like protein COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing gene gene3765 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18685 amad1_18690 amad1_18690 amad1_18690 4238490 4240178 + DNA ligase COG1793 ATP-dependent DNA ligase gene gene3766 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18690 amad1_18695 amad1_18695 amad1_18695 4240277 4240852 + elongation factor P COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) gene gene3767 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18695 amad1_18700 amad1_18700 amad1_18700 4241041 4242009 - Sugar kinase%2C ribokinase family protein COG0524 Sugar kinases%2C ribokinase family gene gene3768 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18700 amad1_18705 amad1_18705 amad1_18705 4242295 4243467 + ROK family transcriptional regulator COG1940 Transcriptional regulator/sugar kinase gene gene3769 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18705 amad1_18710 amad1_18710 amad1_18710 4243503 4244420 + homocysteine S-methyltransferase family protein COG2040 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) gene gene3770 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18710 amad1_18715 amad1_18715 amad1_18715 4244473 4245132 - glutathione S-transferase COG0625 Glutathione S-transferase gene gene3771 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18715 amad1_18720 amad1_18720 amad1_18720 4245132 4245740 - glutathione S-transferase COG0625 Glutathione S-transferase gene gene3772 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18720 amad1_18725 amad1_18725 amad1_18725 4245871 4246860 - lipase chaperone gene gene3773 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18725 amad1_18730 amad1_18730 amad1_18730 4246860 4247834 - putative lactonizing lipase COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold gene gene3774 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18730 amad1_18735 amad1_18735 amad1_18735 4248083 4248835 - 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1%2C4- benzoquinol methylase COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1%2C4-benzoquinol methylase gene gene3775 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18735 amad1_18740 amad1_18740 amad1_18740 4248980 4249339 + hypothetical protein COG3651 Uncharacterized protein conserved in bacteria gene gene3776 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18740 amad1_18745 amad1_18745 amad1_18745 4249442 4250869 - aldehyde dehydrogenase COG1012 NAD-dependent aldehyde dehydrogenases gene gene3777 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18745 amad1_18750 amad1_18750 amad1_18750 4250902 4252542 - acetolactate synthase COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase%2C pyruvate dehydrogenase (cytochrome)%2C glyoxylate carboligase%2C phosphonopyruvate decarboxylase] gene gene3778 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18750 amad1_18755 amad1_18755 amad1_18755 4252777 4253184 - hypothetical protein gene gene3779 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18755 amad1_18760 amad1_18760 amad1_18760 4253278 4254357 - ferrochelatase COG0276 Protoheme ferro-lyase (ferrochelatase) gene gene3780 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18760 amad1_18765 amad1_18765 amad1_18765 4254591 4256192 - putative p-aminobenzoyl-glutamate transport protein COG2978 Putative p-aminobenzoyl-glutamate transporter gene gene3781 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18765 amad1_18770 amad1_18770 amad1_18770 4256488 4257369 - membrane protein COG0330 Membrane protease subunits%2C stomatin/prohibitin homologs gene gene3782 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18770 amad1_18775 amad1_18775 amad1_18775 4257375 4258526 - HflK complex with HflC COG0330 Membrane protease subunits%2C stomatin/prohibitin homologs gene gene3783 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18775 amad1_18780 amad1_18780 amad1_18780 4258594 4259883 - GTP-binding protein HflX COG2262 GTPases gene gene3784 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18780 amad1_18785 amad1_18785 amad1_18785 4259901 4260149 - RNA-binding protein Hfq COG1923 Uncharacterized host factor I protein gene gene3785 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18785 amad1_18790 amad1_18790 amad1_18790 4260228 4261163 - tRNA delta(2)-isopentenylpyrophosphate transferase COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase gene gene3786 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18790 amad1_18795 amad1_18795 mutL mutL 4261165 4262991 - DNA mismatch repair protein COG0323 DNA mismatch repair enzyme (predicted ATPase) gene gene3787 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18795 amad1_18800 amad1_18800 amad1_18800 4263092 4264525 - N-acetylmuramoyl-L-alanine amidase COG0860 N-acetylmuramoyl-L-alanine amidase gene gene3788 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18800 amad1_18805 amad1_18805 amad1_18805 4264510 4264992 - ATP/GTP hydrolase COG0802 Predicted ATPase or kinase gene gene3789 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18805 amad1_18810 amad1_18810 amad1_18810 4265067 4266572 - carbohydrate kinase COG0062 Uncharacterized conserved protein gene gene3790 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18810 amad1_18815 amad1_18815 amad1_18815 4266573 4267715 + putative 4Fe-4S binding protein COG1600 Uncharacterized Fe-S protein gene gene3791 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18815 amad1_18820 amad1_18820 amad1_18820 4267759 4268403 - hypothetical protein gene gene3792 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18820 amad1_18825 amad1_18825 hemE hemE 4268428 4269519 - uroporphyrinogen decarboxylase COG0407 Uroporphyrinogen-III decarboxylase gene gene3793 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18825 amad1_18830 amad1_18830 amad1_18830 4269799 4270632 - NUDIX family pyrophosphohydrolase COG2816 NTP pyrophosphohydrolases containing a Zn-finger%2C probably nucleic-acid-binding gene gene3794 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18830 amad1_18835 amad1_18835 amad1_18835 4270796 4271260 + anti-RNA polymerase sigma 70 factor COG3160 Regulator of sigma D gene gene3795 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18835 amad1_18840 amad1_18840 amad1_18840 4271296 4271769 + ferric uptake regulator family protein COG0735 Fe2+/Zn2+ uptake regulation proteins gene gene3796 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18840 amad1_18845 amad1_18845 amad1_18845 4271759 4272223 + CheC-like protein COG1406 Predicted inhibitor of MCP methylation%2C homolog of CheC gene gene3797 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18845 amad1_18850 amad1_18850 amad1_18850 4272213 4272650 + hypothetical protein COG0432 Uncharacterized conserved protein gene gene3798 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18850 amad1_18855 amad1_18855 amad1_18855 4272752 4273948 + OmpA/MotB protein COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins gene gene3799 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18855 amad1_18860 amad1_18860 amad1_18860 4274100 4275485 - replicative DNA helicase COG0305 Replicative DNA helicase gene gene3800 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18860 amad1_18865 amad1_18865 amad1_18865 4275601 4276071 - hypothetical protein gene gene3801 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18865 amad1_18870 amad1_18870 amad1_18870 4276338 4277351 - hypothetical protein COG3595 Uncharacterized conserved protein gene gene3802 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18870 amad1_18875 amad1_18875 amad1_18875 4277365 4277877 - hypothetical protein gene gene3803 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18875 amad1_18880 amad1_18880 amad1_18880 4277870 4278445 - putative RNA polymerase sigma factor COG1595 DNA-directed RNA polymerase specialized sigma subunit%2C sigma24 homolog gene gene3804 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18880 amad1_18885 amad1_18885 amad1_18885 4278742 4279386 + MOSC domain-containing protein COG2258 Uncharacterized protein conserved in bacteria gene gene3805 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18885 amad1_18890 amad1_18890 amad1_18890 4279373 4279819 - hypothetical protein gene gene3806 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18890 amad1_18895 amad1_18895 amad1_18895 4279900 4280991 - putative hydrolase COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold gene gene3807 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18895 amad1_18900 amad1_18900 rplI rplI 4281305 4281757 - 50S ribosomal protein L9 COG0359 Ribosomal protein L9 gene gene3808 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18900 amad1_18905 amad1_18905 amad1_18905 4281784 4282011 - 30S ribosomal protein S18 COG0238 Ribosomal protein S18 gene gene3809 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18905 amad1_18910 amad1_18910 rpsF rpsF 4282023 4282424 - 30S ribosomal protein S6 COG0360 Ribosomal protein S6 gene gene3810 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18910 amad1_18915 amad1_18915 amad1_18915 4282566 4283792 - histidine kinase A COG0642 Signal transduction histidine kinase gene gene3811 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18915 amad1_18920 amad1_18920 amad1_18920 4284048 4284335 + hypothetical protein COG3141 Uncharacterized protein conserved in bacteria gene gene3812 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18920 amad1_18925 amad1_18925 amad1_18925 4284532 4285296 + ABC transporter ATP-binding protein COG1136 ABC-type antimicrobial peptide transport system%2C ATPase component gene gene3813 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18925 amad1_18930 amad1_18930 amad1_18930 4285296 4286618 + putative permease COG0577 ABC-type antimicrobial peptide transport system%2C permease component gene gene3814 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18930 amad1_18935 amad1_18935 amad1_18935 4286642 4288225 - methyl-accepting chemotaxis protein COG2202 FOG: PAS/PAC domain gene gene3815 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18935 amad1_18940 amad1_18940 amad1_18940 4288381 4289886 - sensor histidine kinase COG0642 Signal transduction histidine kinase gene gene3816 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18940 amad1_18945 amad1_18945 amad1_18945 4289966 4291048 - methyl-accepting chemotaxis protein COG0840 Methyl-accepting chemotaxis protein gene gene3817 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18945 amad1_18950 amad1_18950 amad1_18950 4291344 4292096 + putative integral membrane protein gene gene3818 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18950 amad1_18955 amad1_18955 amad1_18955 4292143 4293105 - Co/Zn/Cd efflux system protein COG1230 Co/Zn/Cd efflux system component gene gene3819 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18955 amad1_18970 amad1_18970 amad1_18970 4295677 4298625 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3820 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18970 amad1_18975 amad1_18975 amad1_18975 4298801 4300288 - Na+/H+ antiporter NhaC COG1757 Na+/H+ antiporter gene gene3821 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18975 amad1_18980 amad1_18980 amad1_18980 4300534 4303086 - glucan 1%2C4-beta-glucosidase COG1472 Beta-glucosidase-related glycosidases gene gene3822 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18980 amad1_18985 amad1_18985 amad1_18985 4303099 4304361 - glucose/galactose transporter family protein COG0738 Fucose permease gene gene3823 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18985 amad1_18990 amad1_18990 amad1_18990 4304567 4305925 + beta-glucosidase COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase gene gene3824 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18990 amad1_18995 amad1_18995 amad1_18995 4305946 4306947 + galactose operon repressor COG1609 Transcriptional regulators gene gene3825 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_18995 amad1_19000 amad1_19000 amad1_19000 4306949 4308523 + MFS transporter COG0477 Permeases of the major facilitator superfamily gene gene3826 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19000 amad1_19005 amad1_19005 amad1_19005 4308838 4309260 + ketosteroid isomerase like protein COG4319 Ketosteroid isomerase homolog gene gene3827 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19005 amad1_19010 amad1_19010 amad1_19010 4309474 4310271 + acid phosphatase COG2503 Predicted secreted acid phosphatase gene gene3828 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19010 amad1_19015 amad1_19015 amad1_19015 4310519 4312402 + diguanylate cyclase COG2199 FOG: GGDEF domain gene gene3829 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19015 amad1_19020 amad1_19020 amad1_19020 4313128 4314348 + putative mfs transporter COG0477 Permeases of the major facilitator superfamily gene gene3830 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19020 amad1_19025 amad1_19025 amad1_19025 4314719 4315489 + putative siderophore utilization protein COG2375 Siderophore-interacting protein gene gene3831 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19025 amad1_19030 amad1_19030 amad1_19030 4315684 4315875 + protein YjbJ COG3237 Uncharacterized protein conserved in bacteria gene gene3832 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19030 amad1_19035 amad1_19035 amad1_19035 4316076 4316597 - hypothetical protein gene gene3833 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19035 amad1_19040 amad1_19040 amad1_19040 4316587 4317588 - hypothetical protein gene gene3834 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19040 amad1_19045 amad1_19045 amad1_19045 4317822 4318754 - hypothetical protein gene gene3835 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19045 amad1_19050 amad1_19050 amad1_19050 4318879 4319556 - hypothetical protein gene gene3836 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19050 amad1_19055 amad1_19055 amad1_19055 4319683 4320099 - hypothetical protein COG1186 Protein chain release factor B gene gene3837 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19055 amad1_19060 amad1_19060 amad1_19060 4320244 4321176 + Alpha/beta hydrolase fold protein COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene3838 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19060 amad1_19065 amad1_19065 amad1_19065 4321194 4321628 - hypothetical protein gene gene3839 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19065 amad1_19070 amad1_19070 amad1_19070 4321870 4322433 - CBS domain-containing protein COG0517 FOG: CBS domain gene gene3840 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19070 amad1_19075 amad1_19075 amad1_19075 4322478 4322801 - hypothetical protein gene gene3841 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19075 amad1_19080 amad1_19080 amad1_19080 4323033 4323602 + putative cytochrome b561 COG3038 Cytochrome B561 gene gene3842 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19080 amad1_19085 amad1_19085 amad1_19085 4323626 4324192 + hypothetical protein COG2353 Uncharacterized conserved protein gene gene3843 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19085 amad1_19090 amad1_19090 amad1_19090 4324259 4325551 - respiratory NADH dehydrogenase II COG1252 NADH dehydrogenase%2C FAD-containing subunit gene gene3844 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19090 amad1_19095 amad1_19095 amad1_19095 4325732 4327801 - putative TonB-dependent receptor protein COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3845 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19095 amad1_19100 amad1_19100 amad1_19100 4328081 4328524 + hypothetical protein gene gene3846 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19100 amad1_19105 amad1_19105 amad1_19105 4328733 4329617 + LysR family transcriptional regulator COG0583 Transcriptional regulator gene gene3847 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19105 amad1_19110 amad1_19110 amad1_19110 4329744 4331099 - Long-chain fatty acid transport protein COG2067 Long-chain fatty acid transport protein gene gene3848 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19110 amad1_19115 amad1_19115 amad1_19115 4331488 4332486 + NADP-dependent oxidoreductase COG2130 Putative NADP-dependent oxidoreductases gene gene3849 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19115 amad1_19120 amad1_19120 amad1_19120 4332565 4333629 - diguanylate cyclase COG2199 FOG: GGDEF domain gene gene3850 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19120 amad1_19125 amad1_19125 amad1_19125 4333702 4335627 - Signal transduction histidine kinase COG0642 Signal transduction histidine kinase gene gene3851 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19125 amad1_19130 amad1_19130 amad1_19130 4335647 4336669 - ABC transporter substrate-binding protein COG2984 ABC-type uncharacterized transport system%2C periplasmic component gene gene3852 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19130 amad1_19135 amad1_19135 amad1_19135 4336793 4337779 - flavin dependent oxidoreductase COG2141 Coenzyme F420-dependent N5%2CN10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases gene gene3853 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19135 amad1_19140 amad1_19140 amad1_19140 4338033 4339865 - glucosamine-fructose-6-phosphate aminotransferase COG0449 Glucosamine 6-phosphate synthetase%2C contains amidotransferase and phosphosugar isomerase domains gene gene3854 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19140 amad1_19145 amad1_19145 amad1_19145 4339868 4340677 - DeoR family transcriptional regulator COG1349 Transcriptional regulators of sugar metabolism gene gene3855 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19145 amad1_19150 amad1_19150 amad1_19150 4340843 4341883 - YvaA protein COG0673 Predicted dehydrogenases and related proteins gene gene3856 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19150 amad1_19155 amad1_19155 amad1_19155 4342110 4343468 - bifunctional N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) gene gene3857 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19155 amad1_19160 amad1_19160 amad1_19160 4343736 4345121 + diguanylate cyclase COG2199 FOG: GGDEF domain gene gene3858 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19160 amad1_19165 amad1_19165 amad1_19165 4345125 4346009 - transmembrane protein COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene3859 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19165 amad1_19170 amad1_19170 amad1_19170 4346017 4346511 - Methylated DNA-protein cysteine methyltransferase COG0350 Methylated DNA-protein cysteine methyltransferase gene gene3860 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19170 amad1_19175 amad1_19175 amad1_19175 4346513 4347940 - ada regulatory protein COG2169 Adenosine deaminase gene gene3861 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19175 amad1_19180 amad1_19180 amad1_19180 4348162 4349310 + beta-lactamase COG1680 Beta-lactamase class C and other penicillin binding proteins gene gene3862 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19180 amad1_19185 amad1_19185 amad1_19185 4349351 4351261 - arginine decarboxylase COG1166 Arginine decarboxylase (spermidine biosynthesis) gene gene3863 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19185 amad1_19190 amad1_19190 amad1_19190 4351420 4351848 - arginine decarboxylase gene gene3864 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19190 amad1_19195 amad1_19195 amad1_19195 4352048 4353436 - NAD(P) transhydrogenase subunit beta COG1282 NAD/NADP transhydrogenase beta subunit gene gene3865 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19195 amad1_19200 amad1_19200 amad1_19200 4353448 4353729 - NAD(P) transhydrogenase subunit alpha COG3288 NAD/NADP transhydrogenase alpha subunit gene gene3866 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19200 amad1_19205 amad1_19205 amad1_19205 4353732 4354889 - NAD(P) transhydrogenase subunit alpha COG3288 NAD/NADP transhydrogenase alpha subunit gene gene3867 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19205 amad1_19210 amad1_19210 amad1_19210 4355430 4358336 + TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3868 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19210 amad1_19215 amad1_19215 amad1_19215 4358421 4359989 + putative tryptophan halogenase gene gene3869 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19215 amad1_19220 amad1_19220 amad1_19220 4360016 4360759 + SapC-like protein gene gene3870 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19220 amad1_19225 amad1_19225 amad1_19225 4360738 4361445 + hypothetical protein gene gene3871 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19225 amad1_19230 amad1_19230 amad1_19230 4361550 4363001 - ApbE family lipoprotein COG3656 Predicted periplasmic protein gene gene3872 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19230 amad1_19235 amad1_19235 amad1_19235 4363001 4363900 - EF hand domain-containing protein gene gene3873 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19235 amad1_19240 amad1_19240 amad1_19240 4363926 4364720 - hypothetical protein gene gene3874 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19240 amad1_19245 amad1_19245 amad1_19245 4364947 4367274 + hypothetical protein COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3875 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19245 amad1_19250 amad1_19250 amad1_19250 4367346 4367621 + hypothetical protein gene gene3876 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19250 amad1_19255 amad1_19255 amad1_19255 4367656 4370820 - TonB-dependent receptor COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3877 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19255 amad1_19260 amad1_19260 amad1_19260 4371029 4371619 + putative RNA polymerase sigma-70 factor FecI COG1595 DNA-directed RNA polymerase specialized sigma subunit%2C sigma24 homolog gene gene3878 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19260 amad1_19265 amad1_19265 amad1_19265 4371612 4372718 + putative regulatory protein COG3712 Fe2+-dicitrate sensor%2C membrane component gene gene3879 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19265 amad1_19270 amad1_19270 amad1_19270 4372895 4373641 + hypothetical protein gene gene3880 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19270 amad1_19275 amad1_19275 amad1_19275 4373750 4374031 - peptidyl-prolyl cis-trans isomerase C COG0760 Parvulin-like peptidyl-prolyl isomerase gene gene3881 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19275 amad1_19280 amad1_19280 amad1_19280 4374115 4375011 - protoheme IX farnesyltransferase COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) gene gene3882 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19280 amad1_19285 amad1_19285 amad1_19285 4375209 4375580 - cytochrome o ubiquinol oxidase protein (Ubiquinol oxidase chain D) COG3125 Heme/copper-type cytochrome/quinol oxidase%2C subunit 4 gene gene3883 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19285 amad1_19290 amad1_19290 amad1_19290 4375580 4376197 - cytochrome o ubiquinol oxidase subunit III COG1845 Heme/copper-type cytochrome/quinol oxidase%2C subunit 3 gene gene3884 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19290 amad1_19295 amad1_19295 amad1_19295 4376197 4378182 - cytochrome-c oxidase COG0843 Heme/copper-type cytochrome/quinol oxidases%2C subunit 1 gene gene3885 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19295 amad1_19300 amad1_19300 amad1_19300 4378185 4379126 - Ubiquinol oxidase polypeptide II COG1622 Heme/copper-type cytochrome/quinol oxidases%2C subunit 2 gene gene3886 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19300 amad1_19305 amad1_19305 amad1_19305 4379276 4379683 - hypothetical protein gene gene3887 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19305 amad1_19310 amad1_19310 amad1_19310 4380179 4380418 + SpoVT/AbrB-like protein COG4456 Virulence-associated protein and related proteins gene gene3888 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19310 amad1_19315 amad1_19315 amad1_19315 4380411 4380812 + nucleic acid-binding protein COG1487 Predicted nucleic acid-binding protein%2C contains PIN domain gene gene3889 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19315 amad1_19320 amad1_19320 amad1_19320 4380814 4381182 + putative integrase COG0582 Integrase gene gene3890 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19320 amad1_19325 amad1_19325 amad1_19325 4381432 4382241 - hypothetical protein gene gene3891 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19325 amad1_19330 amad1_19330 amad1_19330 4382644 4383372 + hypothetical protein gene gene3892 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19330 amad1_19335 amad1_19335 amad1_19335 4383753 4385393 - chaperonin GroEL COG0459 Chaperonin GroEL (HSP60 family) gene gene3893 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19335 amad1_19340 amad1_19340 amad1_19340 4385434 4385724 - co-chaperonin GroES COG0234 Co-chaperonin GroES (HSP10) gene gene3894 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19340 amad1_19345 amad1_19345 amad1_19345 4386014 4386550 - fxsA protein COG3030 Protein affecting phage T7 exclusion by the F plasmid gene gene3895 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19345 amad1_19350 amad1_19350 amad1_19350 4386764 4387078 + divalent cation tolerance protein COG1324 Uncharacterized protein involved in tolerance to divalent cations gene gene3896 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19350 amad1_19355 amad1_19355 dipZ dipZ 4387117 4388997 + thiol:disulfide interchange protein precursor COG4232 Thiol:disulfide interchange protein gene gene3897 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19355 amad1_19360 amad1_19360 amad1_19360 4388981 4389880 + peptidase M23B COG0739 Membrane proteins related to metalloendopeptidases gene gene3898 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19360 amad1_19365 amad1_19365 amad1_19365 4390099 4390539 + 3-dehydroquinate dehydratase COG0757 3-dehydroquinate dehydratase II gene gene3899 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19365 amad1_19370 amad1_19370 amad1_19370 4390554 4391021 + acetyl-CoA carboxylase COG0511 Biotin carboxyl carrier protein gene gene3900 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19370 amad1_19375 amad1_19375 amad1_19375 4391036 4392379 + acetyl-CoA carboxylase COG0439 Biotin carboxylase gene gene3901 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19375 amad1_19380 amad1_19380 amad1_19380 4392408 4392683 + hypothetical protein gene gene3902 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19380 amad1_19385 amad1_19385 amad1_19385 4392893 4393831 + hypothetical protein gene gene3903 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19385 amad1_19390 amad1_19390 amad1_19390 4394070 4394510 + hypothetical protein gene gene3904 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19390 amad1_19395 amad1_19395 amad1_19395 4394581 4394865 - hypothetical protein gene gene3905 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19395 amad1_19400 amad1_19400 amad1_19400 4394941 4397088 - DNA polymerase III subunit epsilon COG0847 DNA polymerase III%2C epsilon subunit and related 3'-5' exonucleases gene gene3906 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19400 amad1_19405 amad1_19405 amad1_19405 4397104 4397358 + hypothetical protein gene gene3907 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19405 amad1_19410 amad1_19410 amad1_19410 4397637 4397828 + hypothetical protein gene gene3908 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19410 amad1_19415 amad1_19415 amad1_19415 4397821 4398450 + hypothetical protein COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases%2C DIM6/NTAB family gene gene3909 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19415 amad1_19420 amad1_19420 amad1_19420 4398686 4398979 + high-potential iron sulfur protein isozyme-2%2C HiPIP-2 gene gene3910 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19420 amad1_19425 amad1_19425 amad1_19425 4399076 4400710 - amidase COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases gene gene3911 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19425 amad1_19430 amad1_19430 amad1_19430 4400851 4401606 - amino acid ABC transporter/signal transduction system protein COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene3912 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19430 amad1_19435 amad1_19435 amad1_19435 4401826 4402704 + 50S ribosomal protein L11 methyltransferase COG2264 Ribosomal protein L11 methylase gene gene3913 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19435 amad1_19440 amad1_19440 amad1_19440 4403053 4404051 + tRNA-dihydrouridine synthase B COG0042 tRNA-dihydrouridine synthase gene gene3914 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19440 amad1_19445 amad1_19445 amad1_19445 4404082 4404375 + transcriptional activator Fis COG2901 Factor for inversion stimulation Fis%2C transcriptional activator gene gene3915 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19445 amad1_19450 amad1_19450 amad1_19450 4404458 4406056 + bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) gene gene3916 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19450 amad1_19455 amad1_19455 amad1_19455 4406342 4407157 + O-methyltransferase COG4798 Predicted methyltransferase gene gene3917 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19455 amad1_19460 amad1_19460 amad1_19460 4407185 4408477 + Phosphoribosylamine-glycine ligase COG0151 Phosphoribosylamine-glycine ligase gene gene3918 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19460 amad1_19465 amad1_19465 amad1_19465 4408935 4409687 + FlgJ-like protein COG2992 Uncharacterized FlgJ-related protein gene gene3919 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19465 amad1_19470 amad1_19470 amad1_19470 4409857 4410618 - hypothetical protein gene gene3920 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19470 amad1_19475 amad1_19475 amad1_19475 4410776 4411711 + putative potassium channel protein COG1226 Kef-type K+ transport systems%2C predicted NAD-binding component gene gene3921 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19475 amad1_19480 amad1_19480 amad1_19480 4411822 4412727 + phosphoribulokinase COG3954 Phosphoribulokinase gene gene3922 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19480 amad1_19485 amad1_19485 amad1_19485 4412866 4413984 + hypothetical protein gene gene3923 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19485 amad1_19490 amad1_19490 ompR ompR 4414198 4414920 + osmolarity response regulator COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene3924 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19490 amad1_19495 amad1_19495 amad1_19495 4414927 4415028 + hypothetical protein gene gene3925 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19495 amad1_19500 amad1_19500 envZ envZ 4415019 4416353 + osmolarity sensor protein COG0642 Signal transduction histidine kinase gene gene3926 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19500 amad1_19505 amad1_19505 amad1_19505 4416388 4417566 - osmolarity sensor protein COG0477 Permeases of the major facilitator superfamily gene gene3927 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19505 amad1_19510 amad1_19510 amad1_19510 4417665 4420130 - glycosyl hydrolase family protein COG1501 Alpha-glucosidases%2C family 31 of glycosyl hydrolases gene gene3928 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19510 amad1_19515 amad1_19515 amad1_19515 4420643 4420849 - hypothetical protein gene gene3929 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19515 amad1_19520 amad1_19520 amad1_19520 4421225 4422787 - phosphoenolpyruvate carboxykinase COG1866 Phosphoenolpyruvate carboxykinase (ATP) gene gene3930 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19520 amad1_19525 amad1_19525 hslO hslO 4423277 4424176 - Hsp33-like chaperonin COG1281 Disulfide bond chaperones of the HSP33 family gene gene3931 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19525 amad1_19530 amad1_19530 amad1_19530 4424200 4424604 - heat shock protein 15 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) gene gene3932 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19530 amad1_19535 amad1_19535 amad1_19535 4424734 4425657 + general secretion pathway protein C COG3031 Type II secretory pathway%2C component PulC gene gene3933 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19535 amad1_19540 amad1_19540 amad1_19540 4425757 4427802 + general secretion pathway protein D COG1450 Type II secretory pathway%2C component PulD gene gene3934 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19540 amad1_19545 amad1_19545 amad1_19545 4427804 4429363 + type II secretory pathway%2C ATPase PulE-like protein COG2804 Type II secretory pathway%2C ATPase PulE/Tfp pilus assembly pathway%2C ATPase PilB gene gene3935 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19545 amad1_19550 amad1_19550 amad1_19550 4429364 4430590 + general secretion pathway protein F COG1459 Type II secretory pathway%2C component PulF gene gene3936 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19550 amad1_19555 amad1_19555 amad1_19555 4430590 4431027 + general secretion pathway protein G COG2165 Type II secretory pathway%2C pseudopilin PulG gene gene3937 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19555 amad1_19560 amad1_19560 amad1_19560 4431033 4431659 + putative general secretion pathway protein H COG2165 Type II secretory pathway%2C pseudopilin PulG gene gene3938 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19560 amad1_19565 amad1_19565 amad1_19565 4431656 4432135 + general secretion pathway protein I COG2165 Type II secretory pathway%2C pseudopilin PulG gene gene3939 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19565 amad1_19570 amad1_19570 amad1_19570 4432137 4432763 + general secretion pathway protein J COG4795 Type II secretory pathway%2C component PulJ gene gene3940 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19570 amad1_19575 amad1_19575 amad1_19575 4432760 4433833 + putative general secretion pathway protein COG3156 Type II secretory pathway%2C component PulK gene gene3941 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19575 amad1_19580 amad1_19580 amad1_19580 4433833 4435032 + general secretion pathway protein L COG3297 Type II secretory pathway%2C component PulL gene gene3942 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19580 amad1_19585 amad1_19585 amad1_19585 4435029 4435508 + general secretion pathway protein M COG3149 Type II secretory pathway%2C component PulM gene gene3943 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19585 amad1_19590 amad1_19590 amad1_19590 4435505 4436260 + putative general secretion pathway protein N gene gene3944 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19590 amad1_19595 amad1_19595 amad1_19595 4436353 4437786 + hypothetical protein COG5339 Uncharacterized protein conserved in bacteria gene gene3945 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19595 amad1_19600 amad1_19600 amad1_19600 4437929 4439317 - succinate-semialdehyde dehydrogenase COG1012 NAD-dependent aldehyde dehydrogenases gene gene3946 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19600 amad1_19605 amad1_19605 amad1_19605 4439648 4440193 - inosine/xanthosine triphosphatase COG1986 Uncharacterized conserved protein gene gene3947 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19605 amad1_19610 amad1_19610 amad1_19610 4440207 4440920 - HAD-superfamily hydrolase COG1011 Predicted hydrolase (HAD superfamily) gene gene3948 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19610 amad1_19615 amad1_19615 nudE nudE 4440992 4441555 + adenosine nucleotide hydrolase NudE COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene3949 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19615 amad1_19620 amad1_19620 amad1_19620 4441558 4442403 + 3-Phosphoadenosine 5-phosphosulfate (PAPS) 3-phosphatase COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase gene gene3950 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19620 amad1_19625 amad1_19625 amad1_19625 4442531 4443115 + hypothetical protein COG2353 Uncharacterized conserved protein gene gene3951 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19625 amad1_19630 amad1_19630 amad1_19630 4443262 4445256 - glucosyltransferase MdoH COG2943 Membrane glycosyltransferase gene gene3952 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19630 amad1_19635 amad1_19635 amad1_19635 4445237 4446868 - glucan biosynthesis protein G COG3131 Periplasmic glucans biosynthesis protein gene gene3953 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19635 amad1_19640 amad1_19640 amad1_19640 4447620 4448174 + outer membrane protein%2C porin family gene gene3954 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19640 amad1_19645 amad1_19645 amad1_19645 4448229 4448462 - hypothetical protein COG3089 Uncharacterized protein conserved in bacteria gene gene3955 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19645 amad1_19650 amad1_19650 amad1_19650 4448513 4449547 - alpha/beta hydrolase fold protein COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold gene gene3956 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19650 amad1_19655 amad1_19655 amad1_19655 4449567 4450070 - hypothetical protein COG5589 Uncharacterized conserved protein gene gene3957 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19655 amad1_19660 amad1_19660 amad1_19660 4450057 4452009 - ABC transporter ATP-binding protein COG0488 ATPase components of ABC transporters with duplicated ATPase domains gene gene3958 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19660 amad1_19665 amad1_19665 amad1_19665 4452128 4452334 + nucleic acid-binding protein COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain gene gene3959 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19665 amad1_19670 amad1_19670 amad1_19670 4452515 4453624 + hypothetical protein gene gene3960 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19670 amad1_19675 amad1_19675 amad1_19675 4453687 4453845 - hypothetical protein gene gene3961 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19675 amad1_19680 amad1_19680 amad1_19680 4453862 4454110 - SlyX family protein COG2900 Uncharacterized protein conserved in bacteria gene gene3962 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19680 amad1_19685 amad1_19685 amad1_19685 4454120 4455052 - WD-40 repeat-containing protein COG2319 FOG: WD40 repeat gene gene3963 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19685 amad1_19690 amad1_19690 amad1_19690 4455250 4456035 + peptidylprolyl isomerase%2C FKBP-type COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 gene gene3964 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19690 amad1_19695 amad1_19695 amad1_19695 4456300 4456569 - hypothetical protein gene gene3965 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19695 amad1_19700 amad1_19700 greB greB 4456744 4457229 + transcription elongation factor GreB COG0782 Transcription elongation factor gene gene3966 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19700 amad1_19705 amad1_19705 amad1_19705 4457407 4459773 + transcriptional accessory protein COG2183 Transcriptional accessory protein gene gene3967 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19705 amad1_19710 amad1_19710 amad1_19710 4459889 4461370 - tryptophan halogenase gene gene3968 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19710 amad1_19715 amad1_19715 amad1_19715 4461387 4462421 - hypothetical protein gene gene3969 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19715 amad1_19720 amad1_19720 amad1_19720 4462433 4463164 - hypothetical protein gene gene3970 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19720 amad1_19735 amad1_19735 amad1_19735 4466698 4467894 - AraC family transcriptional regulator COG1609 Transcriptional regulators gene gene3971 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19735 amad1_19740 amad1_19740 amad1_19740 4468123 4469604 + sugar (glycoside-Pentoside-Hexuronide) transporter COG2211 Na+/melibiose symporter and related transporters gene gene3972 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19740 amad1_19745 amad1_19745 amad1_19745 4469615 4470643 + glycoside hydrolase family 43 domain-containing protein COG3507 Beta-xylosidase gene gene3973 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19745 amad1_19750 amad1_19750 amad1_19750 4470979 4471686 + hypothetical protein gene gene3974 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19750 amad1_19755 amad1_19755 amad1_19755 4471691 4474858 + endo-1%2C4-beta-xylanase COG3693 Beta-1%2C4-xylanase gene gene3975 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19755 amad1_19760 amad1_19760 amad1_19760 4474956 4475936 - aldo/keto reductase COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) gene gene3976 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19760 amad1_19765 amad1_19765 amad1_19765 4476008 4478023 - transketolase COG0021 Transketolase gene gene3977 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19765 amad1_19770 amad1_19770 amad1_19770 4478130 4479449 - xylose isomerase COG2115 Xylose isomerase gene gene3978 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19770 amad1_19775 amad1_19775 amad1_19775 4479453 4480937 - xylulokinase COG1070 Sugar (pentulose and hexulose) kinases gene gene3979 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19775 amad1_19780 amad1_19780 amad1_19780 4481223 4482176 + transaldolase B COG0176 Transaldolase gene gene3980 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19780 amad1_19785 amad1_19785 amad1_19785 4482274 4483212 - aldose 1-epimerase COG2017 Galactose mutarotase and related enzymes gene gene3981 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19785 amad1_19790 amad1_19790 amad1_19790 4483682 4486207 + glucan 1%2C4-beta-glucosidase COG1472 Beta-glucosidase-related glycosidases gene gene3982 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19790 amad1_19795 amad1_19795 amad1_19795 4486240 4487646 + sugar transporter COG0477 Permeases of the major facilitator superfamily gene gene3983 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19795 amad1_19800 amad1_19800 amad1_19800 4487676 4490156 - glycoside hydrolase family 9 domain-containing protein gene gene3984 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19800 amad1_19805 amad1_19805 amad1_19805 4490346 4492169 + hypothetical protein gene gene3985 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19805 amad1_19810 amad1_19810 amad1_19810 4492209 4493042 - hypothetical protein gene gene3986 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19810 amad1_19815 amad1_19815 amad1_19815 4493091 4494656 - glycoside hydrolase family 51 domain-containing protein COG3534 Alpha-L-arabinofuranosidase gene gene3987 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19815 amad1_19820 amad1_19820 amad1_19820 4494797 4495072 + hypothetical protein gene gene3988 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19820 amad1_19825 amad1_19825 amad1_19825 4495226 4497004 + peptidase C1A%2C papain COG4870 Cysteine protease gene gene3989 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19825 amad1_19830 amad1_19830 amad1_19830 4497071 4498054 - hypothetical protein gene gene3990 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19830 amad1_19835 amad1_19835 amad1_19835 4498069 4498383 - hypothetical protein gene gene3991 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19835 amad1_19840 amad1_19840 amad1_19840 4498566 4499375 - putative bioH protein COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene3992 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19840 amad1_19845 amad1_19845 amad1_19845 4499475 4500188 + ComF protein COG1040 Predicted amidophosphoribosyltransferases gene gene3993 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19845 amad1_19850 amad1_19850 amad1_19850 4500259 4502916 - Peptidase M14%2C carboxypeptidase A gene gene3994 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19850 amad1_19855 amad1_19855 amad1_19855 4503078 4503656 + Fe/S biogenesis protein NfuA COG0316 Uncharacterized conserved protein gene gene3995 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19855 amad1_19860 amad1_19860 amad1_19860 4503691 4503921 + hypothetical protein gene gene3996 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19860 amad1_19865 amad1_19865 amad1_19865 4504133 4504828 + aspartate racemase COG1794 Aspartate racemase gene gene3997 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19865 amad1_19870 amad1_19870 amad1_19870 4504890 4505273 + glyoxalase/bleomycin resistance protein/dioxygenase COG0346 Lactoylglutathione lyase and related lyases gene gene3998 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19870 amad1_19875 amad1_19875 amad1_19875 4505337 4506683 - Na(+) driven multidrug efflux pump COG0534 Na+-driven multidrug efflux pump gene gene3999 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19875 amad1_19880 amad1_19880 amad1_19880 4506834 4508009 + Polysaccharide deacetylase family protein COG0726 Predicted xylanase/chitin deacetylase gene gene4000 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19880 amad1_19885 amad1_19885 amad1_19885 4508086 4508673 - GCN5-related N-acetyltransferase COG0456 Acetyltransferases gene gene4001 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19885 amad1_19890 amad1_19890 amad1_19890 4508675 4509319 - hypothetical protein COG1999 Uncharacterized protein SCO1/SenC/PrrC%2C involved in biogenesis of respiratory and photosynthetic systems gene gene4002 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19890 amad1_19895 amad1_19895 amad1_19895 4509316 4510233 - protoheme IX farnesyltransferase COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) gene gene4003 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19895 amad1_19900 amad1_19900 amad1_19900 4510226 4511437 - cytochrome oxidase assembly COG1612 Uncharacterized protein required for cytochrome oxidase assembly gene gene4004 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19900 amad1_19905 amad1_19905 amad1_19905 4511443 4511982 - hypothetical protein gene gene4005 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19905 amad1_19910 amad1_19910 amad1_19910 4511975 4512679 - transmembrane cytochrome oxidase complex biogenesis factor COG3346 Uncharacterized conserved protein gene gene4006 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19910 amad1_19915 amad1_19915 amad1_19915 4512725 4512934 + hypothetical protein gene gene4007 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19915 amad1_19920 amad1_19920 amad1_19920 4512952 4513845 - Cytochrome c oxidase subunit III COG1845 Heme/copper-type cytochrome/quinol oxidase%2C subunit 3 gene gene4008 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19920 amad1_19925 amad1_19925 amad1_19925 4513869 4514456 - cytochrome C oxidase assembly protein COG3175 Cytochrome oxidase assembly factor gene gene4009 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19925 amad1_19930 amad1_19930 amad1_19930 4514597 4516210 - cytochrome c oxidase subunit I COG0843 Heme/copper-type cytochrome/quinol oxidases%2C subunit 1 gene gene4010 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19930 amad1_19935 amad1_19935 amad1_19935 4516220 4517383 - Cytochrome c oxidase%2C subunit II COG1622 Heme/copper-type cytochrome/quinol oxidases%2C subunit 2 gene gene4011 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19935 amad1_19940 amad1_19940 amad1_19940 4517292 4517390 - hypothetical protein gene gene4012 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19940 amad1_19945 amad1_19945 amad1_19945 4517967 4518593 - LexA repressor COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) gene gene4013 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19945 amad1_19950 amad1_19950 amad1_19950 4518902 4521358 + glycerol-3-phosphate acyltransferase COG2937 Glycerol-3-phosphate O-acyltransferase gene gene4014 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19950 amad1_19955 amad1_19955 amad1_19955 4521594 4523141 - threonine dehydratase COG1171 Threonine dehydratase gene gene4015 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19955 amad1_19960 amad1_19960 amad1_19960 4523141 4524991 - dihydroxy-acid dehydratase COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase gene gene4016 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19960 amad1_19965 amad1_19965 amad1_19965 4525420 4526037 + hypothetical protein COG2860 Predicted membrane protein gene gene4017 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19965 amad1_19970 amad1_19970 amad1_19970 4526298 4527806 + Mg chelatase subunit ChlI COG0606 Predicted ATPase with chaperone activity gene gene4018 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19970 amad1_19975 amad1_19975 amad1_19975 4527844 4528716 - DNA-binding transcriptional regulator IlvY COG0583 Transcriptional regulator gene gene4019 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19975 amad1_19980 amad1_19980 amad1_19980 4528874 4530352 + ketol-acid reductoisomerase COG0059 Ketol-acid reductoisomerase gene gene4020 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19980 amad1_19985 amad1_19985 amad1_19985 4530501 4531751 - bicyclomycin resistance protein COG0477 Permeases of the major facilitator superfamily gene gene4021 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19985 amad1_19990 amad1_19990 amad1_19990 4531892 4532077 - peptidase S9%2C prolyl oligopeptidase active site region gene gene4022 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19990 amad1_19995 amad1_19995 amad1_19995 4532328 4534166 + surface antigen D15 COG0729 Outer membrane protein gene gene4023 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_19995 amad1_20000 amad1_20000 amad1_20000 4534163 4538062 + hypothetical protein COG2911 Uncharacterized protein conserved in bacteria gene gene4024 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20000 amad1_20005 amad1_20005 amad1_20005 4538089 4538709 - hypothetical protein gene gene4025 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20005 amad1_20010 amad1_20010 amad1_20010 4538702 4539208 - igma-70 family RNA polymerase sigma factor COG1595 DNA-directed RNA polymerase specialized sigma subunit%2C sigma24 homolog gene gene4026 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20010 amad1_20015 amad1_20015 amad1_20015 4539475 4539750 + hypothetical protein gene gene4027 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20015 amad1_20020 amad1_20020 amad1_20020 4539797 4540699 - membrane protein COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene4028 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20020 amad1_20025 amad1_20025 amad1_20025 4540707 4541639 - 2-hydroxyacid dehydrogenase COG1052 Lactate dehydrogenase and related dehydrogenases gene gene4029 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20025 amad1_20030 amad1_20030 amad1_20030 4541748 4542185 - thioesterase family protein domain-containing protein COG0824 Predicted thioesterase gene gene4030 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20030 amad1_20035 amad1_20035 amad1_20035 4542319 4543416 - gamma-glutamyl kinase COG0263 Glutamate 5-kinase gene gene4031 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20035 amad1_20040 amad1_20040 amad1_20040 4543611 4546076 + aminopeptidase COG0308 Aminopeptidase N gene gene4032 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20040 amad1_20045 amad1_20045 amad1_20045 4546066 4546650 + hypothetical protein gene gene4033 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20045 amad1_20050 amad1_20050 amad1_20050 4546840 4547247 + hypothetical protein gene gene4034 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20050 amad1_20055 amad1_20055 amad1_20055 4547506 4548873 + ABC transporter COG0661 Predicted unusual protein kinase gene gene4035 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20055 amad1_20060 amad1_20060 amad1_20060 4548888 4549196 - Na(+)-translocating NADH-quinone reductase subunit B gene gene4036 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20060 amad1_20065 amad1_20065 amad1_20065 4549319 4549651 - hypothetical protein gene gene4037 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20065 amad1_20070 amad1_20070 amad1_20070 4550093 4550953 + hypothetical protein COG0468 RecA/RadA recombinase gene gene4038 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20070 amad1_20075 amad1_20075 amad1_20075 4550940 4551524 + hypothetical protein COG3816 Uncharacterized protein conserved in bacteria gene gene4039 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20075 amad1_20080 amad1_20080 amad1_20080 4551678 4552970 + Xaa-Pro dipeptidase family protein COG1228 Imidazolonepropionase and related amidohydrolases gene gene4040 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20080 amad1_20085 amad1_20085 amad1_20085 4552997 4553584 + DedA family protein COG1238 Predicted membrane protein gene gene4041 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20085 amad1_20090 amad1_20090 amad1_20090 4553740 4554201 + hypothetical protein gene gene4042 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20090 amad1_20095 amad1_20095 amad1_20095 4554226 4554411 + hypothetical protein gene gene4043 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20095 amad1_20100 amad1_20100 amad1_20100 4554523 4555326 + hypothetical protein gene gene4044 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20100 amad1_20105 amad1_20105 amad1_20105 4555348 4555608 - sulfur transfer protein SirA COG0425 Predicted redox protein%2C regulator of disulfide bond formation gene gene4045 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20105 amad1_20110 amad1_20110 pyrE pyrE 4555598 4556239 - orotate phosphoribosyltransferase COG0461 Orotate phosphoribosyltransferase gene gene4046 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20110 amad1_20115 amad1_20115 amad1_20115 4556261 4556974 - ribonuclease PH COG0689 RNase PH gene gene4047 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20115 amad1_20120 amad1_20120 amad1_20120 4556994 4557158 + hypothetical protein gene gene4048 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20120 amad1_20125 amad1_20125 amad1_20125 4557275 4558138 + hypothetical protein COG1561 Uncharacterized stress-induced protein gene gene4049 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20125 amad1_20130 amad1_20130 amad1_20130 4558384 4559631 + phage integrase family protein site-specific recombinase COG0582 Integrase gene gene4050 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20130 amad1_20135 amad1_20135 amad1_20135 4559763 4560992 - HipA-like protein COG3550 Uncharacterized protein related to capsule biosynthesis enzymes gene gene4051 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20135 amad1_20140 amad1_20140 amad1_20140 4560985 4561305 - XRE family transcriptional regulator COG1396 Predicted transcriptional regulators gene gene4052 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20140 amad1_20145 amad1_20145 amad1_20145 4561630 4561932 + hypothetical protein COG4680 Uncharacterized protein conserved in bacteria gene gene4053 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20145 amad1_20150 amad1_20150 amad1_20150 4561962 4562333 + Helix-turn-helix motif protein COG5499 Predicted transcription regulator containing HTH domain gene gene4054 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20150 amad1_20155 amad1_20155 amad1_20155 4562359 4564749 + DNA helicase COG4951 Uncharacterized protein conserved in bacteria gene gene4055 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20155 amad1_20160 amad1_20160 amad1_20160 4565228 4565917 + hypothetical protein gene gene4056 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20160 amad1_20165 amad1_20165 amad1_20165 4566315 4569572 - DEAD/DEAH box helicase domain protein COG1204 Superfamily II helicase gene gene4057 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20165 amad1_20170 amad1_20170 amad1_20170 4569569 4570360 - hypothetical protein gene gene4058 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20170 amad1_20175 amad1_20175 amad1_20175 4570385 4572496 - type I restriction-modification system methyltransferase subunit COG0286 Type I restriction-modification system methyltransferase subunit gene gene4059 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20175 amad1_20180 amad1_20180 amad1_20180 4572547 4574937 - type I site-specific restriction-modification system%2C R (restriction) subunit COG4096 Type I site-specific restriction-modification system%2C R (restriction) subunit and related helicases gene gene4060 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20180 amad1_20185 amad1_20185 amad1_20185 4574939 4575136 - VrlI like protein COG1910 Periplasmic molybdate-binding protein/domain gene gene4061 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20185 amad1_20190 amad1_20190 amad1_20190 4575386 4577128 - inner membrane protein COG5519 Superfamily II helicase and inactivated derivatives gene gene4062 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20190 amad1_20195 amad1_20195 amad1_20195 4577115 4577357 - hypothetical protein COG3311 Predicted transcriptional regulator gene gene4063 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20195 amad1_20200 amad1_20200 amad1_20200 4577896 4578150 + transcriptional regulator COG1396 Predicted transcriptional regulators gene gene4064 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20200 amad1_20205 amad1_20205 amad1_20205 4578591 4579796 + SAM-dependent methyltransferase COG0789 Predicted transcriptional regulators gene gene4065 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20205 amad1_20210 amad1_20210 amad1_20210 4579836 4580939 + transposase COG5433 Transposase gene gene4066 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20210 amad1_20215 amad1_20215 amad1_20215 4580985 4582571 + sulfatase COG3119 Arylsulfatase A and related enzymes gene gene4067 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20215 amad1_20220 amad1_20220 amad1_20220 4582730 4583701 + hypothetical protein COG0714 MoxR-like ATPases gene gene4068 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20220 amad1_20225 amad1_20225 amad1_20225 4583711 4584643 + hypothetical protein COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) gene gene4069 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20225 amad1_20230 amad1_20230 amad1_20230 4584854 4585210 + hypothetical protein gene gene4070 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20230 amad1_20235 amad1_20235 amad1_20235 4585215 4586201 + von Willebrand factor type A COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain gene gene4071 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20235 amad1_20240 amad1_20240 amad1_20240 4586191 4587822 + hypothetical protein COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain gene gene4072 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20240 amad1_20245 amad1_20245 amad1_20245 4587815 4589107 + hypothetical protein gene gene4073 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20245 amad1_20250 amad1_20250 amad1_20250 4589133 4589909 + alpha/beta hydrolase fold protein COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene4074 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20250 amad1_20255 amad1_20255 amad1_20255 4590016 4591620 - oxidoreductase%2C GMC family protein COG2303 Choline dehydrogenase and related flavoproteins gene gene4075 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20255 amad1_20260 amad1_20260 amad1_20260 4591652 4593088 - coniferyl aldehyde dehydrogenase COG1012 NAD-dependent aldehyde dehydrogenases gene gene4076 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20260 amad1_20265 amad1_20265 amad1_20265 4593108 4594691 - acyl-CoA synthetase COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II gene gene4077 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20265 amad1_20270 amad1_20270 amad1_20270 4594952 4596058 - alpha-methylacyl-CoA racemase COG1804 Predicted acyl-CoA transferases/carnitine dehydratase gene gene4078 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20270 amad1_20275 amad1_20275 amad1_20275 4596383 4597159 - 3-hydroxyacyl-CoA dehydrogenase COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene4079 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20275 amad1_20280 amad1_20280 amad1_20280 4597219 4598364 - acyl-CoA dehydrogenase%2C short-chain specific COG1960 Acyl-CoA dehydrogenases gene gene4080 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20280 amad1_20285 amad1_20285 amad1_20285 4598422 4599660 - thiolase COG0183 Acetyl-CoA acetyltransferase gene gene4081 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20285 amad1_20290 amad1_20290 amad1_20290 4599701 4600489 - putative enoyl-CoA hydratase/isomerase COG1024 Enoyl-CoA hydratase/carnithine racemase gene gene4082 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20290 amad1_20295 amad1_20295 amad1_20295 4600751 4601773 - AraC family transcriptional regulator COG2207 AraC-type DNA-binding domain-containing proteins gene gene4083 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20295 amad1_20300 amad1_20300 amad1_20300 4602172 4602975 - transposase IS3/IS911 family protein COG2801 Transposase and inactivated derivatives gene gene4084 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20300 amad1_20305 amad1_20305 amad1_20305 4603035 4603322 - transposase COG2963 Transposase and inactivated derivatives gene gene4085 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20305 amad1_20310 amad1_20310 amad1_20310 4603471 4604115 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase gene gene4086 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20310 amad1_20315 amad1_20315 amad1_20315 4604119 4605072 - glucokinase COG0837 Glucokinase gene gene4087 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20315 amad1_20320 amad1_20320 amad1_20320 4605072 4606898 - phosphogluconate dehydratase COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase gene gene4088 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20320 amad1_20325 amad1_20325 amad1_20325 4606908 4607600 - 6-phosphogluconolactonase COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase gene gene4089 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20325 amad1_20330 amad1_20330 amad1_20330 4607602 4609095 - glucose-6-phosphate 1-dehydrogenase COG0364 Glucose-6-phosphate 1-dehydrogenase gene gene4090 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20330 amad1_20335 amad1_20335 amad1_20335 4609380 4610231 + DNA-binding transcriptional regulator HexR COG1737 Transcriptional regulators gene gene4091 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20335 amad1_20340 amad1_20340 amad1_20340 4610470 4611906 + pyruvate kinase II COG0469 Pyruvate kinase gene gene4092 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20340 amad1_20345 amad1_20345 amad1_20345 4612089 4612592 + putative MTA/SAH nucleosidase COG0775 Nucleoside phosphorylase gene gene4093 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20345 amad1_20350 amad1_20350 amad1_20350 4612641 4613762 - hypothetical protein gene gene4094 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20350 amad1_20355 amad1_20355 amad1_20355 4613817 4615166 - HipA domain-containing protein COG3550 Uncharacterized protein related to capsule biosynthesis enzymes gene gene4095 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20355 amad1_20360 amad1_20360 amad1_20360 4615156 4615446 - transcriptional regulator COG1396 Predicted transcriptional regulators gene gene4096 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20360 amad1_20365 amad1_20365 amad1_20365 4616159 4616380 + hypothetical protein COG4680 Uncharacterized protein conserved in bacteria gene gene4097 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20365 amad1_20370 amad1_20370 amad1_20370 4616621 4617712 + filamentation induced by cAMP protein fic COG3177 Uncharacterized conserved protein gene gene4098 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20370 amad1_20375 amad1_20375 amad1_20375 4617738 4617884 - tryptophan halogenase gene gene4099 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20375 amad1_20380 amad1_20380 amad1_20380 4618018 4619019 + galactose operon repressor COG1609 Transcriptional regulators gene gene4100 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20380 amad1_20385 amad1_20385 amad1_20385 4619411 4619878 + hypothetical protein gene gene4101 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20385 amad1_20390 amad1_20390 amad1_20390 4619935 4620576 - Outer membrane protein and related peptidoglycan-associated (lipo)protein COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins gene gene4102 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20390 amad1_20395 amad1_20395 amad1_20395 4620942 4622138 - metal dependent phosphohydrolase COG2206 HD-GYP domain gene gene4103 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20395 amad1_20400 amad1_20400 amad1_20400 4622191 4622529 - methylated-DNA-[protein]-cysteineS-methyltransferase COG3695 Predicted methylated DNA-protein cysteine methyltransferase gene gene4104 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20400 amad1_20405 amad1_20405 amad1_20405 4622608 4623192 + DTW domain containing protein COG3148 Uncharacterized conserved protein gene gene4105 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20405 amad1_20410 amad1_20410 amad1_20410 4623211 4623810 - glutathione S-transferase COG0625 Glutathione S-transferase gene gene4106 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20410 amad1_20415 amad1_20415 amad1_20415 4623903 4624889 - hypothetical protein gene gene4107 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20415 amad1_20420 amad1_20420 amad1_20420 4625090 4625503 - F0F1 ATP synthase subunit epsilon COG0355 F0F1-type ATP synthase%2C epsilon subunit (mitochondrial delta subunit) gene gene4108 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20420 amad1_20425 amad1_20425 amad1_20425 4625564 4626949 - F0F1 ATP synthase subunit beta COG0055 F0F1-type ATP synthase%2C beta subunit gene gene4109 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20425 amad1_20430 amad1_20430 amad1_20430 4626983 4627843 - F0F1 ATP synthase subunit gamma COG0224 F0F1-type ATP synthase%2C gamma subunit gene gene4110 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20430 amad1_20435 amad1_20435 amad1_20435 4627902 4629443 - F0F1 ATP synthase subunit alpha COG0056 F0F1-type ATP synthase%2C alpha subunit gene gene4111 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20435 amad1_20440 amad1_20440 amad1_20440 4629457 4629990 - ATP synthase F1 subunit delta COG0712 F0F1-type ATP synthase%2C delta subunit (mitochondrial oligomycin sensitivity protein) gene gene4112 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20440 amad1_20445 amad1_20445 amad1_20445 4630006 4630476 - F0F1 ATP synthase subunit B COG0711 F0F1-type ATP synthase%2C subunit b gene gene4113 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20445 amad1_20450 amad1_20450 amad1_20450 4630522 4630743 - F0F1 ATP synthase subunit C COG0636 F0F1-type ATP synthase%2C subunit c/Archaeal/vacuolar-type H+-ATPase%2C subunit K gene gene4114 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20450 amad1_20455 amad1_20455 amad1_20455 4630844 4631677 - F0F1 ATP synthase subunit A COG0356 F0F1-type ATP synthase%2C subunit a gene gene4115 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20455 amad1_20460 amad1_20460 amad1_20460 4631779 4632165 - F1-F0-type proton-ATPase COG3312 F0F1-type ATP synthase%2C subunit I gene gene4116 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20460 amad1_20465 amad1_20465 amad1_20465 4632372 4633250 - ParB family protein COG1475 Predicted transcriptional regulators gene gene4117 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20465 amad1_20470 amad1_20470 amad1_20470 4633296 4634090 - chromosome partitioning transcriptional regulator COG1192 ATPases involved in chromosome partitioning gene gene4118 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20470 amad1_20475 amad1_20475 gidB gidB 4634124 4634759 - 16S rRNA methyltransferase GidB COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division gene gene4119 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20475 amad1_20480 amad1_20480 amad1_20480 4634936 4636837 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division gene gene4120 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20480 amad1_20485 amad1_20485 amad1_20485 4637557 4638384 - flavodoxin COG1484 DNA replication protein gene gene4121 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20485 amad1_20490 amad1_20490 amad1_20490 4638391 4639059 - flavodoxin COG1291 Flagellar motor component gene gene4122 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20490 amad1_20495 amad1_20495 amad1_20495 4639087 4639524 - flavodoxin/nitric oxide synthase COG0716 Flavodoxins gene gene4123 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20495 amad1_20500 amad1_20500 trmE trmE 4639579 4640967 - tRNA modification GTPase TrmE COG0486 Predicted GTPase gene gene4124 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20500 amad1_20505 amad1_20505 amad1_20505 4640970 4641452 - nucleotide-binding protein COG1666 Uncharacterized protein conserved in bacteria gene gene4125 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20505 amad1_20510 amad1_20510 amad1_20510 4641516 4643171 - inner membrane protein%2C 60 kDa COG0706 Preprotein translocase subunit YidC gene gene4126 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20510 amad1_20515 amad1_20515 amad1_20515 4643182 4643430 - hypothetical protein COG0759 Uncharacterized conserved protein gene gene4127 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20515 amad1_20520 amad1_20520 amad1_20520 4643415 4643774 - ribonuclease P protein component COG0594 RNase P protein component gene gene4128 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20520 amad1_20693 amad1_20693 amad1_20693 26 592 + hypothetical protein COG3091 Uncharacterized protein conserved in bacteria gene gene4129 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20693 amad1_20698 amad1_20698 amad1_20698 767 1825 + hypothetical protein COG0827 Adenine-specific DNA methylase gene gene4130 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20698 amad1_20703 amad1_20703 amad1_20703 1895 2332 + hypothetical protein gene gene4131 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20703 amad1_20708 amad1_20708 amad1_20708 2329 2553 + hypothetical protein gene gene4132 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20708 amad1_20713 amad1_20713 amad1_20713 2586 2951 + hypothetical protein gene gene4133 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20713 amad1_20718 amad1_20718 amad1_20718 2953 3168 + hypothetical protein gene gene4134 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20718 amad1_20723 amad1_20723 amad1_20723 3304 4038 + hypothetical protein gene gene4135 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20723 amad1_20728 amad1_20728 amad1_20728 4096 4314 + hypothetical protein gene gene4136 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20728 amad1_20733 amad1_20733 amad1_20733 4318 4830 + hypothetical protein gene gene4137 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20733 amad1_20738 amad1_20738 amad1_20738 4930 5169 - hypothetical protein gene gene4138 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20738 amad1_20743 amad1_20743 amad1_20743 5156 5458 - hypothetical protein gene gene4139 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20743 amad1_20748 amad1_20748 amad1_20748 5588 5848 - hypothetical protein gene gene4140 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20748 amad1_20753 amad1_20753 amad1_20753 5990 6331 - transcription regulator protein COG1396 Predicted transcriptional regulators gene gene4141 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20753 amad1_20758 amad1_20758 amad1_20758 6479 7114 - hypothetical protein gene gene4142 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20758 amad1_20763 amad1_20763 amad1_20763 7144 7440 - hypothetical protein gene gene4143 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20763 amad1_20768 amad1_20768 amad1_20768 7736 7957 - hypothetical protein gene gene4144 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20768 amad1_20773 amad1_20773 amad1_20773 7961 8521 - hypothetical protein COG1408 Predicted phosphohydrolases gene gene4145 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20773 amad1_20778 amad1_20778 amad1_20778 8834 10552 + parB-like partition protein COG1475 Predicted transcriptional regulators gene gene4146 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20778 amad1_20783 amad1_20783 amad1_20783 10616 11020 + hypothetical protein gene gene4147 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20783 amad1_20788 amad1_20788 amad1_20788 11023 11250 + hypothetical protein gene gene4148 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20788 amad1_20793 amad1_20793 amad1_20793 11362 12675 + hypothetical protein gene gene4149 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20793 amad1_20798 amad1_20798 amad1_20798 12669 13418 + hypothetical protein gene gene4150 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20798 amad1_20803 amad1_20803 amad1_20803 13420 14199 + UBA/THIF-type NAD/FAD binding protein COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 gene gene4151 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20803 amad1_20808 amad1_20808 amad1_20808 14662 16443 + hypothetical protein COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes gene gene4152 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20808 amad1_20813 amad1_20813 amad1_20813 16496 16753 - hypothetical protein gene gene4153 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20813 amad1_20818 amad1_20818 amad1_20818 16999 17205 + hypothetical protein gene gene4154 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20818 amad1_20823 amad1_20823 amad1_20823 17470 17655 + hypothetical protein gene gene4155 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20823 amad1_20828 amad1_20828 amad1_20828 17658 18293 + hypothetical protein gene gene4156 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20828 amad1_20833 amad1_20833 amad1_20833 18356 18979 + hypothetical protein COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase gene gene4157 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20833 amad1_20838 amad1_20838 amad1_20838 19114 20127 + phosphoadenosine phosphosulfate reductase COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes gene gene4158 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20838 amad1_20843 amad1_20843 amad1_20843 20185 21204 - hypothetical protein gene gene4159 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20843 amad1_20848 amad1_20848 amad1_20848 21378 21629 + hypothetical protein gene gene4160 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20848 amad1_20853 amad1_20853 amad1_20853 21824 22438 + hypothetical protein gene gene4161 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20853 amad1_20858 amad1_20858 amad1_20858 22442 22951 + hypothetical protein gene gene4162 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20858 amad1_20863 amad1_20863 amad1_20863 23000 23542 + hypothetical protein gene gene4163 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20863 amad1_20868 amad1_20868 amad1_20868 23705 24073 + hypothetical protein COG0751 Glycyl-tRNA synthetase%2C beta subunit gene gene4164 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20868 amad1_20873 amad1_20873 amad1_20873 24149 24547 + hypothetical protein gene gene4165 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20873 amad1_20878 amad1_20878 amad1_20878 24651 25328 + hypothetical protein gene gene4166 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20878 amad1_20883 amad1_20883 amad1_20883 25465 25992 + hypothetical protein gene gene4167 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20883 amad1_20888 amad1_20888 amad1_20888 25979 26266 + hypothetical protein gene gene4168 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20888 amad1_20893 amad1_20893 amad1_20893 26346 26957 + hypothetical protein gene gene4169 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20893 amad1_20898 amad1_20898 amad1_20898 27144 27713 + hypothetical protein gene gene4170 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20898 amad1_20903 amad1_20903 amad1_20903 27715 28005 - hypothetical protein gene gene4171 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20903 amad1_20908 amad1_20908 amad1_20908 28121 28414 + hypothetical protein gene gene4172 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20908 amad1_20913 amad1_20913 amad1_20913 28478 28858 + hypothetical protein gene gene4173 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20913 amad1_20918 amad1_20918 amad1_20918 29059 29259 + hypothetical protein gene gene4174 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20918 amad1_20923 amad1_20923 amad1_20923 29281 30042 - ISSod6%2C transposase COG3293 Transposase and inactivated derivatives gene gene4175 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20923 amad1_20928 amad1_20928 amad1_20928 30254 30877 + hypothetical protein gene gene4176 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20928 amad1_20933 amad1_20933 amad1_20933 31117 31386 + hypothetical protein gene gene4177 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20933 amad1_20938 amad1_20938 amad1_20938 31442 31873 - hypothetical protein gene gene4178 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20938 amad1_20943 amad1_20943 amad1_20943 31911 32129 - hypothetical protein gene gene4179 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20943 amad1_20948 amad1_20948 amad1_20948 32317 32757 + hypothetical protein gene gene4180 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20948 amad1_20953 amad1_20953 amad1_20953 33015 33371 + hypothetical protein gene gene4181 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20953 amad1_20958 amad1_20958 amad1_20958 33392 34123 + cytoplasmic protein gene gene4182 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20958 amad1_20963 amad1_20963 amad1_20963 34190 34387 + hypothetical protein gene gene4183 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20963 amad1_20968 amad1_20968 amad1_20968 34447 34944 + hypothetical protein gene gene4184 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20968 amad1_20973 amad1_20973 amad1_20973 34991 35674 - hypothetical protein gene gene4185 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20973 amad1_20978 amad1_20978 amad1_20978 35851 36285 + hypothetical protein gene gene4186 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20978 amad1_20983 amad1_20983 amad1_20983 36503 36808 + hypothetical protein gene gene4187 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20983 amad1_20988 amad1_20988 amad1_20988 36912 37310 + hypothetical protein gene gene4188 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20988 amad1_20993 amad1_20993 amad1_20993 37387 37650 + hypothetical protein gene gene4189 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20993 amad1_20998 amad1_20998 amad1_20998 38510 38722 + hypothetical protein gene gene4190 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_20998 amad1_21013 amad1_21013 amad1_21013 39121 40269 + hypothetical protein gene gene4191 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21013 amad1_21018 amad1_21018 amad1_21018 40644 41060 - hypothetical protein gene gene4192 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21018 amad1_21023 amad1_21023 amad1_21023 41513 42508 - hypothetical protein COG0582 Integrase gene gene4193 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21023 amad1_21028 amad1_21028 amad1_21028 42772 43353 + hypothetical protein COG2115 Xylose isomerase gene gene4194 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21028 amad1_21033 amad1_21033 amad1_21033 43350 44201 + hypothetical protein gene gene4195 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21033 amad1_21038 amad1_21038 amad1_21038 44198 45400 + type II secretion system protein E COG2805 Tfp pilus assembly protein%2C pilus retraction ATPase PilT gene gene4196 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21038 amad1_21043 amad1_21043 amad1_21043 45400 45717 + hypothetical protein gene gene4197 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21043 amad1_21048 amad1_21048 amad1_21048 45707 46750 + StbA family protein COG0443 Molecular chaperone gene gene4198 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21048 amad1_21053 amad1_21053 amad1_21053 46766 47305 + hypothetical protein gene gene4199 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21053 amad1_21058 amad1_21058 amad1_21058 47302 47880 + hypothetical protein gene gene4200 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21058 amad1_21063 amad1_21063 amad1_21063 47896 50022 - hypothetical protein gene gene4201 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21063 amad1_21068 amad1_21068 amad1_21068 50221 50697 + hypothetical protein gene gene4202 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21068 amad1_21073 amad1_21073 amad1_21073 50694 51413 + hypothetical protein gene gene4203 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21073 amad1_21078 amad1_21078 amad1_21078 51397 52455 + hypothetical protein gene gene4204 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21078 amad1_21083 amad1_21083 amad1_21083 52457 53443 + hypothetical protein gene gene4205 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21083 amad1_21088 amad1_21088 amad1_21088 53440 54444 + hypothetical protein gene gene4206 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21088 amad1_21093 amad1_21093 amad1_21093 54541 55773 + hypothetical protein gene gene4207 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21093 amad1_21098 amad1_21098 amad1_21098 55823 56842 - hypothetical protein gene gene4208 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21098 amad1_21103 amad1_21103 amad1_21103 57099 59498 - hypothetical protein COG0433 Predicted ATPase gene gene4209 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21103 amad1_21108 amad1_21108 amad1_21108 59491 60789 - hypothetical protein gene gene4210 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21108 amad1_21113 amad1_21113 amad1_21113 60776 61417 - hypothetical protein gene gene4211 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21113 amad1_21118 amad1_21118 amad1_21118 61414 62214 - hypothetical protein gene gene4212 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21118 amad1_21123 amad1_21123 amad1_21123 62211 62858 - hypothetical protein gene gene4213 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21123 amad1_21128 amad1_21128 amad1_21128 62945 76630 - N-6 DNA methylase COG0827 Adenine-specific DNA methylase gene gene4214 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21128 amad1_21133 amad1_21133 amad1_21133 76632 78134 - hypothetical protein gene gene4215 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21133 amad1_21138 amad1_21138 amad1_21138 78179 78664 - hypothetical protein COG1651 Protein-disulfide isomerase gene gene4216 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21138 amad1_21143 amad1_21143 amad1_21143 78847 79197 - hypothetical protein gene gene4217 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21143 amad1_21148 amad1_21148 amad1_21148 79340 79735 + hypothetical protein gene gene4218 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21148 amad1_21153 amad1_21153 amad1_21153 79732 80388 + hypothetical protein gene gene4219 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21153 amad1_21158 amad1_21158 amad1_21158 80385 81095 + hypothetical protein gene gene4220 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21158 amad1_21163 amad1_21163 amad1_21163 81098 82030 + hypothetical protein gene gene4221 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21163 amad1_21168 amad1_21168 amad1_21168 82020 87863 + hypothetical protein COG4932 Predicted outer membrane protein gene gene4222 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21168 amad1_21173 amad1_21173 amad1_21173 87978 88982 + hypothetical protein gene gene4223 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21173 amad1_21178 amad1_21178 amad1_21178 88985 89524 + hypothetical protein gene gene4224 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21178 amad1_21183 amad1_21183 amad1_21183 89544 89930 + hypothetical protein gene gene4225 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21183 amad1_21188 amad1_21188 amad1_21188 89967 90545 + hypothetical protein gene gene4226 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21188 amad1_21193 amad1_21193 amad1_21193 90557 93607 + hypothetical protein COG0244 Ribosomal protein L10 gene gene4227 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21193 amad1_21198 amad1_21198 amad1_21198 93628 94521 - DNA replication terminus site-binding protein gene gene4228 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21198 amad1_21203 amad1_21203 amad1_21203 94666 95469 + hypothetical protein gene gene4229 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21203 amad1_21208 amad1_21208 amad1_21208 95549 96268 - hypothetical protein gene gene4230 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21208 amad1_21213 amad1_21213 amad1_21213 96261 96884 - hypothetical protein gene gene4231 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21213 amad1_21218 amad1_21218 amad1_21218 97046 98017 + integrase family protein COG0582 Integrase gene gene4232 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21218 amad1_21223 amad1_21223 amad1_21223 98108 98698 + hypothetical protein gene gene4233 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21223 amad1_21228 amad1_21228 amad1_21228 98978 99136 - excinuclease ABC subunit A gene gene4234 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21228 amad1_21233 amad1_21233 amad1_21233 99756 100118 - hypothetical protein gene gene4235 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21233 amad1_21238 amad1_21238 amad1_21238 100111 102177 - toxin secretion ABC transporter ATP-binding protein COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain an N-terminal double-glycine peptidase domain gene gene4236 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21238 amad1_21243 amad1_21243 amad1_21243 102164 103393 - hypothetical protein gene gene4237 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21243 amad1_21248 amad1_21248 amad1_21248 103383 103835 - hypothetical protein gene gene4238 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21248 amad1_21253 amad1_21253 amad1_21253 103922 104218 + transposase IS3/IS911 family protein COG2963 Transposase and inactivated derivatives gene gene4239 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21253 amad1_21258 amad1_21258 amad1_21258 104215 105096 + hypothetical protein COG2801 Transposase and inactivated derivatives gene gene4240 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21258 amad1_21263 amad1_21263 amad1_21263 105106 105618 - hypothetical protein gene gene4241 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21263 amad1_21268 amad1_21268 amad1_21268 106090 106797 - transposase Tra5-like protein COG2801 Transposase and inactivated derivatives gene gene4242 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21268 amad1_21273 amad1_21273 amad1_21273 106944 107120 - transposon related ORF%2C HTH transcriptional regulator COG2963 Transposase and inactivated derivatives gene gene4243 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21273 amad1_21278 amad1_21278 amad1_21278 107137 107463 + hypothetical protein gene gene4244 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21278 amad1_21283 amad1_21283 amad1_21283 107460 107753 - hypothetical protein gene gene4245 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21283 amad1_21288 amad1_21288 amad1_21288 107927 108664 - hypothetical protein gene gene4246 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21288 amad1_21293 amad1_21293 amad1_21293 108671 108877 - hypothetical protein gene gene4247 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21293 amad1_21298 amad1_21298 amad1_21298 109132 109539 + putative prophage repressor COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) gene gene4248 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21298 amad1_21303 amad1_21303 amad1_21303 109648 110793 + umuC protein COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair gene gene4249 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21303 amad1_21308 amad1_21308 amad1_21308 111159 111614 + hypothetical protein gene gene4250 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21308 amad1_21313 amad1_21313 amad1_21313 111642 113687 + hypothetical protein gene gene4251 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21313 amad1_21318 amad1_21318 amad1_21318 113691 114368 + hypothetical protein gene gene4252 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21318 amad1_21323 amad1_21323 amad1_21323 114962 115789 + hypothetical protein gene gene4253 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21323 amad1_21328 amad1_21328 amad1_21328 115835 116668 - hypothetical protein gene gene4254 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21328 amad1_21333 amad1_21333 amad1_21333 117452 117835 + hypothetical protein COG0531 Amino acid transporters gene gene4255 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21333 amad1_21338 amad1_21338 amad1_21338 117980 118249 + diguanylate cyclase COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain gene gene4256 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21338 amad1_21343 amad1_21343 amad1_21343 118510 118956 - MaoC domain-containing protein dehydratase COG2030 Acyl dehydratase gene gene4257 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21343 amad1_21348 amad1_21348 amad1_21348 118956 120089 - hypothetical protein COG0535 Predicted Fe-S oxidoreductases gene gene4258 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21348 amad1_21353 amad1_21353 amad1_21353 120113 120865 - phenylacetic acid degradation protein COG3396 Uncharacterized conserved protein gene gene4259 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21353 amad1_21358 amad1_21358 amad1_21358 121303 121506 - multi-sensor hybrid histidine kinase COG2202 FOG: PAS/PAC domain gene gene4260 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21358 amad1_21363 amad1_21363 amad1_21363 121783 122349 + putative transposase COG1961 Site-specific recombinases%2C DNA invertase Pin homologs gene gene4261 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21363 amad1_21368 amad1_21368 amad1_21368 122376 123005 - transposase Tn3 COG4644 Transposase and inactivated derivatives%2C TnpA family gene gene4262 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21368 amad1_21373 amad1_21373 amad1_21373 123208 126186 - transposase Tn3 family protein COG4644 Transposase and inactivated derivatives%2C TnpA family gene gene4263 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21373 amad1_21378 amad1_21378 amad1_21378 126922 130530 + hypothetical protein gene gene4264 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21378 amad1_21383 amad1_21383 amad1_21383 130576 130833 - helix-turn-helix domain-containing protein COG1396 Predicted transcriptional regulators gene gene4265 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21383 amad1_21388 amad1_21388 amad1_21388 130906 131430 + hypothetical protein COG1349 Transcriptional regulators of sugar metabolism gene gene4266 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21388 amad1_21393 amad1_21393 amad1_21393 131427 132794 + hypothetical protein COG1061 DNA or RNA helicases of superfamily II gene gene4267 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21393 amad1_21418 amad1_21418 amad1_21418 137611 138483 + YD repeat-containing protein COG3209 Rhs family protein gene gene4268 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21418 amad1_21423 amad1_21423 amad1_21423 138480 139103 + hypothetical protein gene gene4269 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21423 amad1_21428 amad1_21428 amad1_21428 139851 140531 + RHS repeat-associated core domain-containing protein COG3209 Rhs family protein gene gene4270 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21428 amad1_21433 amad1_21433 amad1_21433 140534 140821 + hypothetical protein gene gene4271 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21433 amad1_21438 amad1_21438 amad1_21438 141080 141892 + hypothetical protein gene gene4272 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21438 amad1_21443 amad1_21443 amad1_21443 141951 143465 + hypothetical protein COG0457 FOG: TPR repeat gene gene4273 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21443 amad1_21448 amad1_21448 amad1_21448 143565 143870 - hypothetical protein gene gene4274 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21448 amad1_21453 amad1_21453 amad1_21453 143869 144099 + hypothetical protein gene gene4275 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21453 amad1_21458 amad1_21458 amad1_21458 144277 144864 + hypothetical protein gene gene4276 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21458 amad1_21463 amad1_21463 amad1_21463 145315 146235 - hypothetical protein COG2378 Predicted transcriptional regulator gene gene4277 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21463 amad1_21468 amad1_21468 amad1_21468 146916 147338 + hypothetical protein gene gene4278 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21468 amad1_21473 amad1_21473 amad1_21473 147680 148099 - hypothetical protein COG1309 Transcriptional regulator gene gene4279 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21473 amad1_21478 amad1_21478 amad1_21478 148089 150170 - phage integrase gene gene4280 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21478 amad1_21483 amad1_21483 amad1_21483 150179 151882 - hypothetical protein COG4974 Site-specific recombinase XerD gene gene4281 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21483 amad1_21488 amad1_21488 amad1_21488 151869 152006 - phage integrase gene gene4282 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21488 amad1_21493 amad1_21493 amad1_21493 152135 153064 - transposase gene gene4283 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21493 amad1_21498 amad1_21498 amad1_21498 153181 153660 - hypothetical protein gene gene4284 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21498 amad1_21503 amad1_21503 amad1_21503 153704 154000 - hypothetical protein gene gene4285 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21503 amad1_21508 amad1_21508 amad1_21508 154012 154218 - hypothetical protein gene gene4286 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21508 amad1_21513 amad1_21513 amad1_21513 154245 154532 - hypothetical protein COG4519 Uncharacterized protein conserved in bacteria gene gene4287 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21513 amad1_21518 amad1_21518 amad1_21518 154529 155290 - integrase gene gene4288 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21518 amad1_21523 amad1_21523 amad1_21523 155820 157424 - hypothetical protein gene gene4289 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21523 amad1_21528 amad1_21528 amad1_21528 157467 158108 - hypothetical protein gene gene4290 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21528 amad1_21533 amad1_21533 amad1_21533 158506 159267 + thioesterase COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis gene gene4291 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21533 amad1_21538 amad1_21538 amad1_21538 159570 160352 - phytanoyl-CoA dioxygenase COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin gene gene4292 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21538 amad1_21543 amad1_21543 amad1_21543 160412 162154 - putative multi-domain non-ribosomal peptide synthetase COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene4293 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21543 amad1_21548 amad1_21548 amad1_21548 162160 170325 - peptide synthase COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene4294 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21548 amad1_21553 amad1_21553 amad1_21553 170432 171856 - homospermidine synthase COG5310 Homospermidine synthase gene gene4295 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21553 amad1_21558 amad1_21558 amad1_21558 171914 173602 - cyclic peptide transporter COG1132 ABC-type multidrug transport system%2C ATPase and permease components gene gene4296 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21558 amad1_21563 amad1_21563 amad1_21563 173599 175980 - Penicillin amidase COG2366 Protein related to penicillin acylase gene gene4297 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21563 amad1_21568 amad1_21568 amad1_21568 175988 177511 - Non-ribosomal peptide synthetase COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene4298 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21568 amad1_21573 amad1_21573 amad1_21573 177508 178350 - hypothetical protein COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis gene gene4299 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21573 amad1_21578 amad1_21578 amad1_21578 178393 178632 - hypothetical protein COG3251 Uncharacterized protein conserved in bacteria gene gene4300 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21578 amad1_21583 amad1_21583 amad1_21583 178663 187863 - peptide synthetase COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene4301 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21583 amad1_21588 amad1_21588 amad1_21588 187950 188897 - hypothetical protein gene gene4302 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21588 amad1_21593 amad1_21593 amad1_21593 188878 190413 - hydroxyacylglutathione hydrolase COG0013 Alanyl-tRNA synthetase gene gene4303 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21593 amad1_21598 amad1_21598 amad1_21598 190410 193490 - peptide synthetase COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene4304 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21598 amad1_21603 amad1_21603 amad1_21603 193487 194497 - taurine catabolism dioxygenase TauD/TfdA COG2175 Probable taurine catabolism dioxygenase gene gene4305 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21603 amad1_21608 amad1_21608 amad1_21608 194556 196169 - amino acid adenylation protein COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene4306 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21608 amad1_21613 amad1_21613 amad1_21613 196166 201751 - beta-ketoacyl synthase COG3321 Polyketide synthase modules and related proteins gene gene4307 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21613 amad1_21618 amad1_21618 amad1_21618 201744 205124 - tyrocidine synthase COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene4308 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21618 amad1_21623 amad1_21623 amad1_21623 205111 211401 - amino acid adenylation domain-containing protein COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene4309 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21623 amad1_21628 amad1_21628 amad1_21628 211436 212425 - taurine catabolism dioxygenase TauD/TfdA gene gene4310 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21628 amad1_21633 amad1_21633 amad1_21633 212504 213433 - peptide-aspartate beta-dioxygenase COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases gene gene4311 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21633 amad1_21638 amad1_21638 amad1_21638 214060 214437 + hypothetical protein gene gene4312 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21638 amad1_21643 amad1_21643 amad1_21643 214538 221140 - amino acid adenylation protein COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene4313 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21643 amad1_21648 amad1_21648 amad1_21648 221141 221731 - non-ribosomal peptide synthetase COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene4314 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21648 amad1_21653 amad1_21653 amad1_21653 221805 227687 - amino acid adenylation domain-containing protein COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene4315 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21653 amad1_21658 amad1_21658 amad1_21658 227738 228082 - Glyoxalase/bleomycin resistance protein/dioxygenase COG0346 Lactoylglutathione lyase and related lyases gene gene4316 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21658 amad1_21663 amad1_21663 amad1_21663 228438 229172 + phosphopantetheinyl transferase component of siderophore synthetase COG2977 Phosphopantetheinyl transferase component of siderophore synthetase gene gene4317 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21663 amad1_21668 amad1_21668 amad1_21668 229871 230863 - hypothetical protein gene gene4318 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21668 amad1_21673 amad1_21673 amad1_21673 230929 231648 - hypothetical protein gene gene4319 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21673 amad1_21678 amad1_21678 amad1_21678 232360 233805 - AAA ATPase COG1132 ABC-type multidrug transport system%2C ATPase and permease components gene gene4320 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21678 amad1_21683 amad1_21683 amad1_21683 233802 235952 - hypothetical protein COG2801 Transposase and inactivated derivatives gene gene4321 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21683 amad1_21688 amad1_21688 amad1_21688 235942 236766 - TnsA endonuclease gene gene4322 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21688 amad1_21693 amad1_21693 amad1_21693 237292 238134 + hypothetical protein COG1086 Predicted nucleoside-diphosphate sugar epimerases gene gene4323 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21693 amad1_21698 amad1_21698 amad1_21698 238362 238982 + hypothetical protein gene gene4324 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21698 amad1_21703 amad1_21703 amad1_21703 239115 239714 - hypothetical protein COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) gene gene4325 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21703 amad1_21708 amad1_21708 amad1_21708 239702 240958 - hypothetical protein gene gene4326 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21708 amad1_21713 amad1_21713 amad1_21713 240955 241257 - hypothetical protein gene gene4327 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21713 amad1_21718 amad1_21718 amad1_21718 241260 241784 - hypothetical protein gene gene4328 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21718 amad1_21723 amad1_21723 amad1_21723 241892 242341 + hypothetical protein gene gene4329 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21723 amad1_21728 amad1_21728 amad1_21728 242370 243014 - hypothetical protein gene gene4330 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21728 amad1_21733 amad1_21733 amad1_21733 243166 243459 - hypothetical protein gene gene4331 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21733 amad1_21738 amad1_21738 amad1_21738 243449 243928 - hypothetical protein gene gene4332 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21738 amad1_21743 amad1_21743 amad1_21743 244072 246156 + UvrD/REP helicase COG0210 Superfamily I DNA and RNA helicases gene gene4333 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21743 amad1_21748 amad1_21748 amad1_21748 246156 246485 + hypothetical protein gene gene4334 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21748 amad1_21753 amad1_21753 amad1_21753 246487 247278 + hypothetical protein gene gene4335 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21753 amad1_21758 amad1_21758 amad1_21758 247314 248564 - hypothetical protein gene gene4336 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21758 amad1_21763 amad1_21763 amad1_21763 248804 252895 - putative phage tail protein gene gene4337 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21763 amad1_21768 amad1_21768 amad1_21768 252931 253377 - hypothetical protein gene gene4338 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21768 amad1_21773 amad1_21773 amad1_21773 253421 253867 - hypothetical protein gene gene4339 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21773 amad1_21778 amad1_21778 amad1_21778 253885 255054 - hypothetical protein COG1459 Type II secretory pathway%2C component PulF gene gene4340 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21778 amad1_21783 amad1_21783 amad1_21783 255051 256634 - type II secretion system protein E COG2804 Type II secretory pathway%2C ATPase PulE/Tfp pilus assembly pathway%2C ATPase PilB gene gene4341 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21783 amad1_21788 amad1_21788 amad1_21788 256644 257366 - hypothetical protein gene gene4342 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21788 amad1_21793 amad1_21793 amad1_21793 257359 258627 - hypothetical protein gene gene4343 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21793 amad1_21798 amad1_21798 amad1_21798 258624 260231 - hypothetical protein COG1450 Type II secretory pathway%2C component PulD gene gene4344 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21798 amad1_21803 amad1_21803 amad1_21803 260231 260869 - hypothetical protein gene gene4345 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21803 amad1_21808 amad1_21808 amad1_21808 260988 261272 - hypothetical protein COG2974 DNA recombination-dependent growth factor C gene gene4346 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21808 amad1_21813 amad1_21813 amad1_21813 261293 261910 + putative transposase gene gene4347 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21813 amad1_21818 amad1_21818 amad1_21818 262073 262441 + hypothetical protein COG0751 Glycyl-tRNA synthetase%2C beta subunit gene gene4348 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21818 amad1_21823 amad1_21823 amad1_21823 262517 262915 + hypothetical protein gene gene4349 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21823 amad1_21828 amad1_21828 amad1_21828 263019 263696 + hypothetical protein gene gene4350 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21828 amad1_21833 amad1_21833 amad1_21833 263833 264360 + hypothetical protein gene gene4351 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21833 amad1_21838 amad1_21838 amad1_21838 264347 264634 + hypothetical protein gene gene4352 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21838 amad1_21843 amad1_21843 amad1_21843 264714 265325 + hypothetical protein gene gene4353 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21843 amad1_21848 amad1_21848 amad1_21848 265512 266081 + hypothetical protein gene gene4354 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21848 amad1_21853 amad1_21853 amad1_21853 266083 266373 - hypothetical protein gene gene4355 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21853 amad1_21858 amad1_21858 amad1_21858 266489 266782 + hypothetical protein gene gene4356 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21858 amad1_21863 amad1_21863 amad1_21863 266846 267226 + hypothetical protein gene gene4357 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21863 amad1_21868 amad1_21868 amad1_21868 267427 267627 + hypothetical protein gene gene4358 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21868 amad1_21873 amad1_21873 amad1_21873 267649 268410 - ISSod6%2C transposase COG3293 Transposase and inactivated derivatives gene gene4359 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21873 amad1_21878 amad1_21878 amad1_21878 268622 269245 + hypothetical protein gene gene4360 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21878 amad1_21883 amad1_21883 amad1_21883 269485 269754 + hypothetical protein gene gene4361 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21883 amad1_21888 amad1_21888 amad1_21888 269810 270241 - hypothetical protein gene gene4362 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21888 amad1_21893 amad1_21893 amad1_21893 270279 270497 - hypothetical protein gene gene4363 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21893 amad1_21898 amad1_21898 amad1_21898 270685 271125 + hypothetical protein gene gene4364 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21898 amad1_21903 amad1_21903 amad1_21903 271383 271739 + hypothetical protein gene gene4365 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21903 amad1_21908 amad1_21908 amad1_21908 271760 272491 + cytoplasmic protein gene gene4366 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21908 amad1_21913 amad1_21913 amad1_21913 272558 272755 + hypothetical protein gene gene4367 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21913 amad1_21918 amad1_21918 amad1_21918 272815 273312 + hypothetical protein gene gene4368 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21918 amad1_21923 amad1_21923 amad1_21923 273359 274042 - hypothetical protein gene gene4369 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21923 amad1_21928 amad1_21928 amad1_21928 274219 274653 + hypothetical protein gene gene4370 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21928 amad1_21933 amad1_21933 amad1_21933 274871 275176 + hypothetical protein gene gene4371 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21933 amad1_21938 amad1_21938 amad1_21938 275280 275678 + hypothetical protein gene gene4372 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21938 amad1_21943 amad1_21943 amad1_21943 275755 276018 + hypothetical protein gene gene4373 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21943 amad1_21948 amad1_21948 amad1_21948 276878 277084 + hypothetical protein gene gene4374 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21948 amad1_21953 amad1_21953 amad1_21953 277172 278665 + putative transposase COG4584 Transposase and inactivated derivatives gene gene4375 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21953 amad1_21958 amad1_21958 amad1_21958 278658 279407 + putative transposase COG1484 DNA replication protein gene gene4376 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21958 amad1_21963 amad1_21963 amad1_21963 279409 280191 - hypothetical protein COG2974 DNA recombination-dependent growth factor C gene gene4377 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21963 amad1_21968 amad1_21968 amad1_21968 280192 280674 - hypothetical protein gene gene4378 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21968 amad1_21973 amad1_21973 amad1_21973 280643 281380 - hypothetical protein COG2200 FOG: EAL domain gene gene4379 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21973 amad1_21978 amad1_21978 amad1_21978 281433 282161 - hypothetical protein gene gene4380 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21978 amad1_21983 amad1_21983 amad1_21983 282161 282622 - hypothetical protein gene gene4381 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21983 amad1_21988 amad1_21988 amad1_21988 282635 283507 - diguanylate cyclase COG2199 FOG: GGDEF domain gene gene4382 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21988 amad1_21993 amad1_21993 amad1_21993 283974 284576 + hypothetical protein gene gene4383 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21993 amad1_21998 amad1_21998 amad1_21998 284579 285001 + hypothetical protein COG4176 ABC-type proline/glycine betaine transport system%2C permease component gene gene4384 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_21998 amad1_22003 amad1_22003 amad1_22003 285012 286298 + hypothetical protein gene gene4385 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22003 amad1_22008 amad1_22008 amad1_22008 286624 287580 + transposase COG3677 Transposase and inactivated derivatives gene gene4386 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22008 amad1_22013 amad1_22013 amad1_22013 287629 289209 + hypothetical protein gene gene4387 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22013 amad1_22018 amad1_22018 amad1_22018 289288 290472 - acyltransferase 3 COG1835 Predicted acyltransferases gene gene4388 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22018 amad1_22023 amad1_22023 amad1_22023 290469 290897 - hypothetical protein gene gene4389 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22023 amad1_22028 amad1_22028 amad1_22028 291038 291490 - hypothetical protein gene gene4390 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22028 amad1_22033 amad1_22033 amad1_22033 291634 292158 - hypothetical protein gene gene4391 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22033 amad1_22038 amad1_22038 amad1_22038 292450 292656 + hypothetical protein gene gene4392 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22038 amad1_22043 amad1_22043 amad1_22043 292669 293220 + hypothetical protein gene gene4393 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22043 amad1_22048 amad1_22048 amad1_22048 293203 293529 - hypothetical protein gene gene4394 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22048 amad1_22053 amad1_22053 amad1_22053 293930 294259 - hypothetical protein gene gene4395 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22053 amad1_22058 amad1_22058 amad1_22058 294470 294679 + hypothetical protein gene gene4396 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22058 amad1_22063 amad1_22063 amad1_22063 294758 295633 + hypothetical protein gene gene4397 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22063 amad1_22068 amad1_22068 amad1_22068 296062 297174 - putative RepA replicase protein gene gene4398 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22068 amad1_22073 amad1_22073 amad1_22073 297302 298444 + replication protein A COG1192 ATPases involved in chromosome partitioning gene gene4399 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22073 amad1_22078 amad1_22078 amad1_22078 298437 299396 + hypothetical protein COG1475 Predicted transcriptional regulators gene gene4400 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22078 amad1_22083 amad1_22083 amad1_22083 300026 300427 + hypothetical protein gene gene4401 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22083 amad1_22088 amad1_22088 amad1_22088 300420 301712 - Initiator RepB protein gene gene4402 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22088 amad1_22093 amad1_22093 amad1_22093 302296 302544 - hypothetical protein COG1396 Predicted transcriptional regulators gene gene4403 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22093 amad1_22098 amad1_22098 amad1_22098 302638 303246 + hypothetical protein gene gene4404 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_22098 amad1_r20663 amad1_r20663 amad1_r20663 40185 40300 + 5S ribosomal RNA rRNA gene35 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20663 amad1_r20665 amad1_r20665 amad1_r20665 40442 40557 + 5S ribosomal RNA rRNA gene36 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20665 amad1_r20667 amad1_r20667 amad1_r20667 438354 438469 + 5S ribosomal RNA rRNA gene403 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20667 amad1_r20669 amad1_r20669 amad1_r20669 2966008 2966123 - 5S ribosomal RNA rRNA gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20669 amad1_r20671 amad1_r20671 amad1_r20671 3818473 3818588 - 5S ribosomal RNA rRNA gene3402 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20671 amad1_r20673 amad1_r20673 amad1_r20673 3973294 3973409 - 5S ribosomal RNA rRNA gene3545 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20673 amad1_r20675 amad1_r20675 amad1_r20675 35119 36645 + 16S ribosomal RNA rRNA gene32 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20675 amad1_r20677 amad1_r20677 amad1_r20677 432902 434435 + 16S ribosomal RNA rRNA gene399 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20677 amad1_r20679 amad1_r20679 amad1_r20679 2970388 2971921 - 16S ribosomal RNA rRNA gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20679 amad1_r20681 amad1_r20681 amad1_r20681 3822358 3823891 - 16S ribosomal RNA rRNA gene3406 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20681 amad1_r20683 amad1_r20683 amad1_r20683 3976952 3978484 - 16S ribosomal RNA rRNA gene3547 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20683 amad1_r20685 amad1_r20685 amad1_r20685 37084 39972 + 23S ribosomal RNA rRNA gene34 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20685 amad1_r20687 amad1_r20687 amad1_r20687 435173 438048 + 23S ribosomal RNA rRNA gene402 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20687 amad1_r20689 amad1_r20689 amad1_r20689 2966444 2969321 - 23S ribosomal RNA rRNA gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20689 amad1_r20691 amad1_r20691 amad1_r20691 3818813 3821690 - 23S ribosomal RNA rRNA gene3403 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20691 amad1_r20693 amad1_r20693 amad1_r20693 3973634 3976511 - 23S ribosomal RNA rRNA gene3546 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_r20693 amad1_t20527 amad1_t20527 amad1_t20527 36793 36862 + tRNA-OTHER tRNA gene33 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20527 amad1_t20529 amad1_t20529 amad1_t20529 82660 82736 + tRNA-Arg tRNA gene79 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20529 amad1_t20531 amad1_t20531 amad1_t20531 311559 311634 + tRNA-Phe tRNA gene279 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20531 amad1_t20533 amad1_t20533 amad1_t20533 434513 434588 + tRNA-Ala tRNA gene400 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20533 amad1_t20535 amad1_t20535 amad1_t20535 434706 434782 + tRNA-Ile tRNA gene401 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20535 amad1_t20537 amad1_t20537 amad1_t20537 558152 558227 + tRNA-Gly tRNA gene511 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20537 amad1_t20539 amad1_t20539 amad1_t20539 586286 586361 + tRNA-Thr tRNA gene535 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20539 amad1_t20541 amad1_t20541 amad1_t20541 996200 996276 - tRNA-Met tRNA gene898 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20541 amad1_t20543 amad1_t20543 amad1_t20543 1107030 1107104 - tRNA-Arg tRNA gene998 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20543 amad1_t20545 amad1_t20545 amad1_t20545 1220279 1220369 + tRNA-Ser tRNA gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20545 amad1_t20547 amad1_t20547 amad1_t20547 1220412 1220488 + tRNA-Arg tRNA gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20547 amad1_t20549 amad1_t20549 amad1_t20549 1220542 1220618 + tRNA-Arg tRNA gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20549 amad1_t20551 amad1_t20551 amad1_t20551 1263085 1263161 + tRNA-Trp tRNA gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20551 amad1_t20553 amad1_t20553 amad1_t20553 1438896 1438972 - tRNA-Asn tRNA gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20553 amad1_t20555 amad1_t20555 amad1_t20555 1439000 1439076 - tRNA-Asn tRNA gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20555 amad1_t20557 amad1_t20557 amad1_t20557 1542658 1542733 + tRNA-Lys tRNA gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20557 amad1_t20559 amad1_t20559 amad1_t20559 1542758 1542833 + tRNA-Lys tRNA gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20559 amad1_t20561 amad1_t20561 amad1_t20561 1542873 1542948 + tRNA-Lys tRNA gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20561 amad1_t20563 amad1_t20563 amad1_t20563 1544368 1544457 + tRNA-Ser tRNA gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20563 amad1_t20565 amad1_t20565 amad1_t20565 1608979 1609054 - tRNA-Val tRNA gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20565 amad1_t20567 amad1_t20567 amad1_t20567 1609091 1609166 - tRNA-Val tRNA gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20567 amad1_t20569 amad1_t20569 amad1_t20569 1609203 1609278 - tRNA-Val tRNA gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20569 amad1_t20571 amad1_t20571 amad1_t20571 1611328 1611403 + tRNA-Ala tRNA gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20571 amad1_t20573 amad1_t20573 amad1_t20573 1611550 1611625 + tRNA-Glu tRNA gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20573 amad1_t20575 amad1_t20575 amad1_t20575 1611767 1611842 + tRNA-Glu tRNA gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20575 amad1_t20577 amad1_t20577 amad1_t20577 1611983 1612058 + tRNA-Glu tRNA gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20577 amad1_t20579 amad1_t20579 amad1_t20579 1612205 1612280 + tRNA-Glu tRNA gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20579 amad1_t20581 amad1_t20581 amad1_t20581 1727391 1727466 - tRNA-Gln tRNA gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20581 amad1_t20583 amad1_t20583 amad1_t20583 1727470 1727554 - tRNA-Leu tRNA gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20583 amad1_t20585 amad1_t20585 amad1_t20585 1727589 1727665 - tRNA-Met tRNA gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20585 amad1_t20587 amad1_t20587 amad1_t20587 1727718 1727793 - tRNA-Gln tRNA gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20587 amad1_t20589 amad1_t20589 amad1_t20589 1727796 1727880 - tRNA-Leu tRNA gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20589 amad1_t20591 amad1_t20591 amad1_t20591 1727916 1727991 - tRNA-Gln tRNA gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20591 amad1_t20593 amad1_t20593 amad1_t20593 1727996 1728080 - tRNA-Leu tRNA gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20593 amad1_t20595 amad1_t20595 amad1_t20595 1728116 1728192 - tRNA-Met tRNA gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20595 amad1_t20597 amad1_t20597 amad1_t20597 1735837 1735912 - tRNA-Gln tRNA gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20597 amad1_t20599 amad1_t20599 amad1_t20599 1778492 1778568 + tRNA-Val tRNA gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20599 amad1_t20601 amad1_t20601 amad1_t20601 2001547 2001623 + tRNA-Asp tRNA gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20601 amad1_t20603 amad1_t20603 amad1_t20603 2001654 2001730 + tRNA-Asp tRNA gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20603 amad1_t20605 amad1_t20605 amad1_t20605 2001761 2001837 + tRNA-Asp tRNA gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20605 amad1_t20607 amad1_t20607 amad1_t20607 2001869 2001945 + tRNA-Asp tRNA gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20607 amad1_t20609 amad1_t20609 amad1_t20609 2069576 2069652 + tRNA-Met tRNA gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20609 amad1_t20611 amad1_t20611 amad1_t20611 2069706 2069782 + tRNA-Met tRNA gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20611 amad1_t20613 amad1_t20613 amad1_t20613 2197930 2198015 + tRNA-Leu tRNA gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20613 amad1_t20615 amad1_t20615 amad1_t20615 2455263 2455349 - tRNA-Leu tRNA gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20615 amad1_t20617 amad1_t20617 amad1_t20617 2455409 2455482 - tRNA-Cys tRNA gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20617 amad1_t20619 amad1_t20619 amad1_t20619 2455524 2455599 - tRNA-Gly tRNA gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20619 amad1_t20621 amad1_t20621 amad1_t20621 2463699 2463790 - tRNA-Ser tRNA gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20621 amad1_t20623 amad1_t20623 amad1_t20623 2468017 2468108 - tRNA-Ser tRNA gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20623 amad1_t20625 amad1_t20625 amad1_t20625 2803210 2803286 - tRNA-Pro tRNA gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20625 amad1_t20627 amad1_t20627 amad1_t20627 2969746 2969822 - tRNA-Ile tRNA gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20627 amad1_t20629 amad1_t20629 amad1_t20629 2969940 2970015 - tRNA-Ala tRNA gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20629 amad1_t20631 amad1_t20631 amad1_t20631 3069285 3069361 - tRNA-Pro tRNA gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20631 amad1_t20633 amad1_t20633 amad1_t20633 3069407 3069491 - tRNA-Leu tRNA gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20633 amad1_t20635 amad1_t20635 amad1_t20635 3069499 3069574 - tRNA-His tRNA gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20635 amad1_t20637 amad1_t20637 amad1_t20637 3069734 3069810 - tRNA-Pro tRNA gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20637 amad1_t20639 amad1_t20639 amad1_t20639 3069852 3069936 - tRNA-Leu tRNA gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20639 amad1_t20641 amad1_t20641 amad1_t20641 3069944 3070019 - tRNA-His tRNA gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20641 amad1_t20643 amad1_t20643 amad1_t20643 3070108 3070184 - tRNA-Arg tRNA gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20643 amad1_t20645 amad1_t20645 amad1_t20645 3070208 3070284 - tRNA-Pro tRNA gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20645 amad1_t20647 amad1_t20647 amad1_t20647 3608229 3608315 + tRNA-Leu tRNA gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20647 amad1_t20649 amad1_t20649 amad1_t20649 3822082 3822158 - tRNA-Ile tRNA gene3404 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20649 amad1_t20651 amad1_t20651 amad1_t20651 3822205 3822280 - tRNA-Ala tRNA gene3405 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20651 amad1_t20653 amad1_t20653 amad1_t20653 3967046 3967121 - tRNA-Thr tRNA gene3536 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20653 amad1_t20655 amad1_t20655 amad1_t20655 3967129 3967203 - tRNA-Gly tRNA gene3537 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20655 amad1_t20657 amad1_t20657 amad1_t20657 3967237 3967321 - tRNA-Tyr tRNA gene3538 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20657 amad1_t20659 amad1_t20659 amad1_t20659 3967329 3967404 - tRNA-Thr tRNA gene3539 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20659 amad1_t20661 amad1_t20661 amad1_t20661 4212754 4212830 - tRNA-Trp tRNA gene3744 http://www.ncbi.nlm.nih.gov/gene/?term=amad1_t20661