locus-tag class description AV941_00005 PF11638 DnaA N-terminal domain AV941_00005 PF08299 Bacterial dnaA protein helix-turn-helix AV941_00005 PF00308 Bacterial dnaA protein AV941_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AV941_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AV941_00010 PF02767 DNA polymerase III beta subunit, central domain AV941_00015 PF02463 RecF/RecN/SMC N terminal domain AV941_00020 PF00986 DNA gyrase B subunit, carboxyl terminus AV941_00020 PF18053 DNA gyrase B subunit insert domain AV941_00020 PF01751 Toprim domain AV941_00020 PF00204 DNA gyrase B AV941_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_00030 PF02092 Glycyl-tRNA synthetase beta subunit AV941_00030 PF05746 DALR anticodon binding domain AV941_00035 PF02091 Glycyl-tRNA synthetase alpha subunit AV941_00040 PF03352 Methyladenine glycosylase AV941_00050 PF04220 Der GTPase activator (YihI) AV941_00060 PF00034 Cytochrome c AV941_00065 PF01926 50S ribosome-binding GTPase AV941_00070 PF01612 3'-5' exonuclease AV941_00070 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AV941_00070 PF01367 5'-3' exonuclease, C-terminal SAM fold AV941_00070 PF00476 DNA polymerase family A AV941_00080 PF02386 Cation transport protein AV941_00085 PF02254 TrkA-N domain AV941_00085 PF02080 TrkA-C domain AV941_00090 PF01029 NusB family AV941_00090 PF01189 16S rRNA methyltransferase RsmB/F AV941_00095 PF00551 Formyl transferase AV941_00095 PF02911 Formyl transferase, C-terminal domain AV941_00100 PF01327 Polypeptide deformylase AV941_00110 PF02481 DNA recombination-mediator protein A AV941_00110 PF17782 DprA winged helix domain AV941_00115 PF04361 Protein of unknown function (DUF494) AV941_00125 PF01300 Telomere recombination AV941_00130 PF01218 Coproporphyrinogen III oxidase AV941_00135 PF03922 OmpW family AV941_00145 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AV941_00145 PF08501 Shikimate dehydrogenase substrate binding domain AV941_00145 PF01488 Shikimate / quinate 5-dehydrogenase AV941_00150 PF00132 Bacterial transferase hexapeptide (six repeats) AV941_00195 PF02811 PHP domain AV941_00195 PF14579 Helix-hairpin-helix motif AV941_00195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AV941_00195 PF07733 Bacterial DNA polymerase III alpha NTPase domain AV941_00195 PF01336 OB-fold nucleic acid binding domain AV941_00225 PF04389 Peptidase family M28 AV941_00225 PF02225 PA domain AV941_00230 PF00535 Glycosyl transferase family 2 AV941_00235 PF00440 Bacterial regulatory proteins, tetR family AV941_00240 PF04127 DNA / pantothenate metabolism flavoprotein AV941_00240 PF02441 Flavoprotein AV941_00245 PF04002 RadC-like JAB domain AV941_00265 PF06082 Exopolysaccharide biosynthesis protein YbjH AV941_00270 PF00830 Ribosomal L28 family AV941_00275 PF00471 Ribosomal protein L33 AV941_00285 PF06827 Zinc finger found in FPG and IleRS AV941_00285 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AV941_00285 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AV941_00290 PF01467 Cytidylyltransferase-like AV941_00300 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AV941_00315 PF03707 Bacterial signalling protein N terminal repeat AV941_00315 PF00563 EAL domain AV941_00315 PF00990 Diguanylate cyclase, GGDEF domain AV941_00320 PF00155 Aminotransferase class I and II AV941_00325 PF08240 Alcohol dehydrogenase GroES-like domain AV941_00325 PF00107 Zinc-binding dehydrogenase AV941_00330 PF00581 Rhodanese-like domain AV941_00335 PF01694 Rhomboid family AV941_00335 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AV941_00345 PF04345 Chorismate lyase AV941_00350 PF01040 UbiA prenyltransferase family AV941_00365 PF04380 Membrane fusogenic activity AV941_00370 PF00580 UvrD/REP helicase N-terminal domain AV941_00370 PF13361 UvrD-like helicase C-terminal domain AV941_00375 PF00990 Diguanylate cyclase, GGDEF domain AV941_00375 PF03707 Bacterial signalling protein N terminal repeat AV941_00375 PF00563 EAL domain AV941_00380 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AV941_00410 PF04143 Sulphur transport AV941_00415 PF02082 Transcriptional regulator AV941_00420 PF01925 Sulfite exporter TauE/SafE AV941_00425 PF00753 Metallo-beta-lactamase superfamily AV941_00435 PF07715 TonB-dependent Receptor Plug Domain AV941_00435 PF00593 TonB dependent receptor AV941_00450 PF00005 ABC transporter AV941_00450 PF00664 ABC transporter transmembrane region AV941_00455 PF00005 ABC transporter AV941_00455 PF00664 ABC transporter transmembrane region AV941_00465 PF01654 Cytochrome bd terminal oxidase subunit I AV941_00475 PF00581 Rhodanese-like domain AV941_00475 PF01206 Sulfurtransferase TusA AV941_00480 PF00753 Metallo-beta-lactamase superfamily AV941_00485 PF10417 C-terminal domain of 1-Cys peroxiredoxin AV941_00485 PF00578 AhpC/TSA family AV941_00495 PF00578 AhpC/TSA family AV941_00515 PF00873 AcrB/AcrD/AcrF family AV941_00525 PF02028 BCCT, betaine/carnitine/choline family transporter AV941_00570 PF00145 C-5 cytosine-specific DNA methylase AV941_00575 PF04851 Type III restriction enzyme, res subunit AV941_00575 PF12344 Ultra-violet resistance protein B AV941_00575 PF17757 UvrB interaction domain AV941_00575 PF02151 UvrB/uvrC motif AV941_00575 PF00271 Helicase conserved C-terminal domain AV941_00585 PF13533 Biotin-lipoyl like AV941_00590 PF00005 ABC transporter AV941_00600 PF07715 TonB-dependent Receptor Plug Domain AV941_00600 PF00593 TonB dependent receptor AV941_00610 PF02770 Acyl-CoA dehydrogenase, middle domain AV941_00610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV941_00610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV941_00615 PF03466 LysR substrate binding domain AV941_00615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_00620 PF00753 Metallo-beta-lactamase superfamily AV941_00625 PF04317 YcjX-like family, DUF463 AV941_00640 PF02661 Fic/DOC family AV941_00645 PF06968 Biotin and Thiamin Synthesis associated domain AV941_00645 PF04055 Radical SAM superfamily AV941_00650 PF05690 Thiazole biosynthesis protein ThiG AV941_00660 PF00899 ThiF family AV941_00665 PF02581 Thiamine monophosphate synthase AV941_00670 PF13667 ThiC-associated domain AV941_00670 PF01964 Radical SAM ThiC family AV941_00675 PF07219 HemY protein N-terminus AV941_00675 PF07719 Tetratricopeptide repeat AV941_00680 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AV941_00685 PF02602 Uroporphyrinogen-III synthase HemD AV941_00690 PF03900 Porphobilinogen deaminase, C-terminal domain AV941_00690 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AV941_00695 PF17151 Periplasmic sensor domain AV941_00695 PF00990 Diguanylate cyclase, GGDEF domain AV941_00705 PF00625 Guanylate kinase AV941_00710 PF01192 RNA polymerase Rpb6 AV941_00715 PF02824 TGS domain AV941_00715 PF04607 Region found in RelA / SpoT proteins AV941_00715 PF13291 ACT domain AV941_00720 PF01042 Endoribonuclease L-PSP AV941_00725 PF00588 SpoU rRNA Methylase family AV941_00725 PF12105 SpoU, rRNA methylase, C-terminal AV941_00730 PF17191 RecG wedge domain AV941_00730 PF00270 DEAD/DEAH box helicase AV941_00730 PF00271 Helicase conserved C-terminal domain AV941_00735 PF04445 Putative SAM-dependent methyltransferase AV941_00740 PF08534 Redoxin AV941_00755 PF00528 Binding-protein-dependent transport system inner membrane component AV941_00760 PF00005 ABC transporter AV941_00760 PF08402 TOBE domain AV941_00765 PF05552 Conserved TM helix AV941_00765 PF00924 Mechanosensitive ion channel AV941_00790 PF01527 Transposase AV941_00800 PF00873 AcrB/AcrD/AcrF family AV941_00805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV941_00805 PF00529 HlyD membrane-fusion protein of T1SS AV941_00825 PF13411 MerR HTH family regulatory protein AV941_00830 PF01527 Transposase AV941_00835 PF13276 HTH-like domain AV941_00835 PF13333 Integrase core domain AV941_00835 PF00665 Integrase core domain AV941_00850 PF00563 EAL domain AV941_00850 PF04940 Sensors of blue-light using FAD AV941_00855 PF03466 LysR substrate binding domain AV941_00855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_00860 PF01810 LysE type translocator AV941_00865 PF00893 Small Multidrug Resistance protein AV941_00880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV941_00880 PF00529 HlyD membrane-fusion protein of T1SS AV941_00885 PF00873 AcrB/AcrD/AcrF family AV941_00895 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AV941_00895 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AV941_00900 PF00850 Histone deacetylase domain AV941_00915 PF00672 HAMP domain AV941_00915 PF12729 Four helix bundle sensory module for signal transduction AV941_00915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV941_00925 PF11737 Protein of unknown function (DUF3300) AV941_00930 PF00925 GTP cyclohydrolase II AV941_00935 PF08448 PAS fold AV941_00935 PF00990 Diguanylate cyclase, GGDEF domain AV941_00935 PF00563 EAL domain AV941_00950 PF00570 HRDC domain AV941_00950 PF00270 DEAD/DEAH box helicase AV941_00950 PF09382 RQC domain AV941_00950 PF16124 RecQ zinc-binding AV941_00950 PF00271 Helicase conserved C-terminal domain AV941_00955 PF01769 Divalent cation transporter AV941_00955 PF03448 MgtE intracellular N domain AV941_00955 PF00571 CBS domain AV941_00960 PF00892 EamA-like transporter family AV941_00965 PF00072 Response regulator receiver domain AV941_00965 PF00990 Diguanylate cyclase, GGDEF domain AV941_00970 PF00580 UvrD/REP helicase N-terminal domain AV941_00970 PF13361 UvrD-like helicase C-terminal domain AV941_00975 PF00132 Bacterial transferase hexapeptide (six repeats) AV941_00975 PF06426 Serine acetyltransferase, N-terminal AV941_00980 PF13419 Haloacid dehalogenase-like hydrolase AV941_00995 PF01678 Diaminopimelate epimerase AV941_01000 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AV941_01000 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AV941_01015 PF01569 PAP2 superfamily AV941_01020 PF03737 Aldolase/RraA AV941_01030 PF02441 Flavoprotein AV941_01035 PF02875 Mur ligase family, glutamate ligase domain AV941_01035 PF01225 Mur ligase family, catalytic domain AV941_01035 PF08245 Mur ligase middle domain AV941_01040 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AV941_01045 PF00719 Inorganic pyrophosphatase AV941_01070 PF17755 UvrA DNA-binding domain AV941_01070 PF17760 UvrA interaction domain AV941_01070 PF00005 ABC transporter AV941_01075 PF07690 Major Facilitator Superfamily AV941_01080 PF13419 Haloacid dehalogenase-like hydrolase AV941_01095 PF00356 Bacterial regulatory proteins, lacI family AV941_01105 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AV941_01105 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AV941_01110 PF10509 Galactokinase galactose-binding signature AV941_01110 PF00288 GHMP kinases N terminal domain AV941_01110 PF08544 GHMP kinases C terminal AV941_01115 PF00474 Sodium:solute symporter family AV941_01120 PF00436 Single-strand binding protein family AV941_01135 PF16363 GDP-mannose 4,6 dehydratase AV941_01140 PF00703 Glycosyl hydrolases family 2 AV941_01140 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AV941_01140 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AV941_01140 PF02837 Glycosyl hydrolases family 2, sugar binding domain AV941_01140 PF16355 Domain of unknown function (DUF4982) AV941_01155 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AV941_01155 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AV941_01160 PF00455 DeoR C terminal sensor domain AV941_01160 PF08220 DeoR-like helix-turn-helix domain AV941_01165 PF01266 FAD dependent oxidoreductase AV941_01165 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AV941_01200 PF00263 Bacterial type II and III secretion system protein AV941_01200 PF03958 Bacterial type II/III secretion system short domain AV941_01205 PF13401 AAA domain AV941_01205 PF01471 Putative peptidoglycan binding domain AV941_01215 PF00437 Type II/IV secretion system protein AV941_01215 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AV941_01220 PF00482 Type II secretion system (T2SS), protein F AV941_01230 PF07963 Prokaryotic N-terminal methylation motif AV941_01230 PF00114 Pilin (bacterial filament) AV941_01235 PF07963 Prokaryotic N-terminal methylation motif AV941_01235 PF00114 Pilin (bacterial filament) AV941_01240 PF07963 Prokaryotic N-terminal methylation motif AV941_01240 PF00114 Pilin (bacterial filament) AV941_01270 PF04085 rod shape-determining protein MreC AV941_01275 PF04093 rod shape-determining protein MreD AV941_01280 PF02545 Maf-like protein AV941_01285 PF10150 Ribonuclease E/G family AV941_01285 PF00575 S1 RNA binding domain AV941_01295 PF00795 Carbon-nitrogen hydrolase AV941_01300 PF01523 Putative modulator of DNA gyrase AV941_01305 PF04751 Protein of unknown function (DUF615) AV941_01310 PF01523 Putative modulator of DNA gyrase AV941_01315 PF16353 Domain of unknown function(DUF4981) AV941_01315 PF02837 Glycosyl hydrolases family 2, sugar binding domain AV941_01315 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AV941_01315 PF00703 Glycosyl hydrolases family 2 AV941_01315 PF02929 Beta galactosidase small chain AV941_01320 PF00072 Response regulator receiver domain AV941_01320 PF00486 Transcriptional regulatory protein, C terminal AV941_01325 PF00497 Bacterial extracellular solute-binding proteins, family 3 AV941_01325 PF00512 His Kinase A (phospho-acceptor) domain AV941_01325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_01330 PF08323 Starch synthase catalytic domain AV941_01330 PF00534 Glycosyl transferases group 1 AV941_01335 PF08468 Methyltransferase small domain N-terminal AV941_01335 PF05175 Methyltransferase small domain AV941_01340 PF02390 Putative methyltransferase AV941_01345 PF00561 alpha/beta hydrolase fold AV941_01350 PF00633 Helix-hairpin-helix motif AV941_01350 PF00730 HhH-GPD superfamily base excision DNA repair protein AV941_01350 PF14815 NUDIX domain AV941_01355 PF04362 Bacterial Fe(2+) trafficking AV941_01370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_01370 PF00672 HAMP domain AV941_01370 PF00512 His Kinase A (phospho-acceptor) domain AV941_01375 PF00072 Response regulator receiver domain AV941_01375 PF00486 Transcriptional regulatory protein, C terminal AV941_01390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV941_01395 PF00873 AcrB/AcrD/AcrF family AV941_01440 PF08031 Berberine and berberine like AV941_01440 PF01565 FAD binding domain AV941_01465 PF00970 Oxidoreductase FAD-binding domain AV941_01465 PF00175 Oxidoreductase NAD-binding domain AV941_01465 PF00042 Globin AV941_01485 PF01750 Hydrogenase maturation protease AV941_01495 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AV941_01495 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AV941_01500 PF00374 Nickel-dependent hydrogenase AV941_01510 PF01455 HupF/HypC family AV941_01515 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AV941_01520 PF02492 CobW/HypB/UreG, nucleotide-binding domain AV941_01525 PF01924 Hydrogenase formation hypA family AV941_01530 PF17788 HypF Kae1-like domain AV941_01530 PF07503 HypF finger AV941_01530 PF00708 Acylphosphatase AV941_01530 PF01300 Telomere recombination AV941_01535 PF00586 AIR synthase related protein, N-terminal domain AV941_01535 PF02769 AIR synthase related protein, C-terminal domain AV941_01540 PF00376 MerR family regulatory protein AV941_01540 PF09278 MerR, DNA binding AV941_01545 PF00403 Heavy-metal-associated domain AV941_01610 PF00529 HlyD membrane-fusion protein of T1SS AV941_01610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV941_01615 PF00873 AcrB/AcrD/AcrF family AV941_01620 PF16916 Dimerisation domain of Zinc Transporter AV941_01620 PF01545 Cation efflux family AV941_01630 PF01219 Prokaryotic diacylglycerol kinase AV941_01635 PF08019 Phosphoethanolamine transferase EptA/EptB AV941_01635 PF00884 Sulfatase AV941_01640 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AV941_01650 PF00535 Glycosyl transferase family 2 AV941_01655 PF00486 Transcriptional regulatory protein, C terminal AV941_01655 PF00072 Response regulator receiver domain AV941_01660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_01660 PF00512 His Kinase A (phospho-acceptor) domain AV941_01660 PF00672 HAMP domain AV941_01675 PF00376 MerR family regulatory protein AV941_01675 PF09278 MerR, DNA binding AV941_01680 PF00403 Heavy-metal-associated domain AV941_01715 PF13520 Amino acid permease AV941_01725 PF07732 Multicopper oxidase AV941_01725 PF07731 Multicopper oxidase AV941_01725 PF00394 Multicopper oxidase AV941_01760 PF00665 Integrase core domain AV941_01760 PF13333 Integrase core domain AV941_01760 PF13276 HTH-like domain AV941_01765 PF00665 Integrase core domain AV941_01765 PF13333 Integrase core domain AV941_01765 PF13276 HTH-like domain AV941_01775 PF13737 Transposase DDE domain AV941_01795 PF00356 Bacterial regulatory proteins, lacI family AV941_01795 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AV941_01805 PF01204 Trehalase AV941_01820 PF13419 Haloacid dehalogenase-like hydrolase AV941_01825 PF00072 Response regulator receiver domain AV941_01825 PF00512 His Kinase A (phospho-acceptor) domain AV941_01825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_01825 PF08448 PAS fold AV941_01825 PF13426 PAS domain AV941_01840 PF00356 Bacterial regulatory proteins, lacI family AV941_01845 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AV941_01845 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AV941_01855 PF03825 Nucleoside H+ symporter AV941_01865 PF05199 GMC oxidoreductase AV941_01865 PF00732 GMC oxidoreductase AV941_01880 PF00465 Iron-containing alcohol dehydrogenase AV941_01905 PF01063 Amino-transferase class IV AV941_01910 PF00300 Histidine phosphatase superfamily (branch 1) AV941_01920 PF00330 Aconitase family (aconitate hydratase) AV941_01920 PF00694 Aconitase C-terminal domain AV941_01930 PF00437 Type II/IV secretion system protein AV941_01935 PF00338 Ribosomal protein S10p/S20e AV941_01940 PF00297 Ribosomal protein L3 AV941_01945 PF00573 Ribosomal protein L4/L1 family AV941_01950 PF00276 Ribosomal protein L23 AV941_01955 PF03947 Ribosomal Proteins L2, C-terminal domain AV941_01955 PF00181 Ribosomal Proteins L2, RNA binding domain AV941_01960 PF00203 Ribosomal protein S19 AV941_01965 PF00237 Ribosomal protein L22p/L17e AV941_01970 PF07650 KH domain AV941_01970 PF00189 Ribosomal protein S3, C-terminal domain AV941_01975 PF00252 Ribosomal protein L16p/L10e AV941_01980 PF00831 Ribosomal L29 protein AV941_01985 PF00366 Ribosomal protein S17 AV941_01990 PF13439 Glycosyltransferase Family 4 AV941_01990 PF00534 Glycosyl transferases group 1 AV941_02000 PF00534 Glycosyl transferases group 1 AV941_02000 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AV941_02020 PF02743 Cache domain AV941_02020 PF00672 HAMP domain AV941_02020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV941_02025 PF01432 Peptidase family M3 AV941_02035 PF00551 Formyl transferase AV941_02035 PF01842 ACT domain AV941_02045 PF00270 DEAD/DEAH box helicase AV941_02045 PF00271 Helicase conserved C-terminal domain AV941_02045 PF08482 ATP-dependent helicase C-terminal AV941_02045 PF04408 Helicase associated domain (HA2) AV941_02050 PF13406 Transglycosylase SLT domain AV941_02055 PF00905 Penicillin binding protein transpeptidase domain AV941_02055 PF00912 Transglycosylase AV941_02055 PF14814 Bifunctional transglycosylase second domain AV941_02065 PF05661 Protein of unknown function (DUF808) AV941_02070 PF12833 Helix-turn-helix domain AV941_02080 PF00543 Nitrogen regulatory protein P-II AV941_02085 PF00909 Ammonium Transporter Family AV941_02095 PF04261 Dyp-type peroxidase family AV941_02100 PF00672 HAMP domain AV941_02100 PF00211 Adenylate and Guanylate cyclase catalytic domain AV941_02105 PF00202 Aminotransferase class-III AV941_02110 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AV941_02110 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AV941_02125 PF00873 AcrB/AcrD/AcrF family AV941_02135 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AV941_02135 PF00672 HAMP domain AV941_02135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_02135 PF00512 His Kinase A (phospho-acceptor) domain AV941_02135 PF01627 Hpt domain AV941_02135 PF00072 Response regulator receiver domain AV941_02140 PF00521 DNA gyrase/topoisomerase IV, subunit A AV941_02140 PF03989 DNA gyrase C-terminal domain, beta-propeller AV941_02150 PF13188 PAS domain AV941_02150 PF03707 Bacterial signalling protein N terminal repeat AV941_02150 PF00990 Diguanylate cyclase, GGDEF domain AV941_02150 PF00563 EAL domain AV941_02160 PF00171 Aldehyde dehydrogenase family AV941_02165 PF04958 Arginine N-succinyltransferase beta subunit AV941_02170 PF00202 Aminotransferase class-III AV941_02180 PF00117 Glutamine amidotransferase class-I AV941_02185 PF00579 tRNA synthetases class I (W and Y) AV941_02190 PF00834 Ribulose-phosphate 3 epimerase family AV941_02210 PF02086 D12 class N6 adenine-specific DNA methyltransferase AV941_02220 PF01761 3-dehydroquinate synthase AV941_02225 PF01202 Shikimate kinase AV941_02230 PF07660 Secretin and TonB N terminus short domain AV941_02230 PF11741 AMIN domain AV941_02230 PF00263 Bacterial type II and III secretion system protein AV941_02230 PF03958 Bacterial type II/III secretion system short domain AV941_02255 PF00905 Penicillin binding protein transpeptidase domain AV941_02255 PF00912 Transglycosylase AV941_02255 PF17092 Penicillin-binding protein OB-like domain AV941_02260 PF03949 Malic enzyme, NAD binding domain AV941_02260 PF00390 Malic enzyme, N-terminal domain AV941_02270 PF02798 Glutathione S-transferase, N-terminal domain AV941_02280 PF06628 Catalase-related immune-responsive AV941_02280 PF00199 Catalase AV941_02295 PF03707 Bacterial signalling protein N terminal repeat AV941_02295 PF00563 EAL domain AV941_02295 PF00990 Diguanylate cyclase, GGDEF domain AV941_02300 PF00696 Amino acid kinase family AV941_02300 PF00583 Acetyltransferase (GNAT) family AV941_02305 PF14698 Argininosuccinate lyase C-terminal AV941_02305 PF00206 Lyase AV941_02310 PF00764 Arginosuccinate synthase AV941_02315 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AV941_02315 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AV941_02320 PF00696 Amino acid kinase family AV941_02325 PF01118 Semialdehyde dehydrogenase, NAD binding domain AV941_02325 PF02774 Semialdehyde dehydrogenase, dimerisation domain AV941_02330 PF02142 MGS-like domain AV941_02340 PF00486 Transcriptional regulatory protein, C terminal AV941_02340 PF00072 Response regulator receiver domain AV941_02345 PF16527 Two-component sensor protein CpxA, periplasmic domain AV941_02345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_02345 PF00672 HAMP domain AV941_02345 PF00512 His Kinase A (phospho-acceptor) domain AV941_02350 PF12146 Serine aminopeptidase, S33 AV941_02355 PF00588 SpoU rRNA Methylase family AV941_02365 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AV941_02365 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AV941_02370 PF02556 Preprotein translocase subunit SecB AV941_02375 PF00462 Glutaredoxin AV941_02380 PF00581 Rhodanese-like domain AV941_02385 PF01551 Peptidase family M23 AV941_02390 PF04748 Divergent polysaccharide deacetylase AV941_02410 PF02666 Phosphatidylserine decarboxylase AV941_02415 PF03193 RsgA GTPase AV941_02420 PF00929 Exonuclease AV941_02440 PF07715 TonB-dependent Receptor Plug Domain AV941_02440 PF00593 TonB dependent receptor AV941_02455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AV941_02455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AV941_02455 PF00205 Thiamine pyrophosphate enzyme, central domain AV941_02460 PF10369 Small subunit of acetolactate synthase AV941_02470 PF02416 mttA/Hcf106 family AV941_02475 PF02416 mttA/Hcf106 family AV941_02480 PF00902 Sec-independent protein translocase protein (TatC) AV941_02490 PF01026 TatD related DNase AV941_02495 PF00563 EAL domain AV941_02495 PF01590 GAF domain AV941_02495 PF00990 Diguanylate cyclase, GGDEF domain AV941_02495 PF00360 Phytochrome region AV941_02500 PF00490 Delta-aminolevulinic acid dehydratase AV941_02505 PF02541 Ppx/GppA phosphatase family AV941_02510 PF00271 Helicase conserved C-terminal domain AV941_02510 PF00270 DEAD/DEAH box helicase AV941_02515 PF00085 Thioredoxin AV941_02520 PF07497 Rho termination factor, RNA-binding domain AV941_02520 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AV941_02520 PF07498 Rho termination factor, N-terminal domain AV941_02530 PF00072 Response regulator receiver domain AV941_02530 PF00512 His Kinase A (phospho-acceptor) domain AV941_02530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_02530 PF09308 LuxQ, periplasmic AV941_02535 PF06965 Na+/H+ antiporter 1 AV941_02540 PF00731 AIR carboxylase AV941_02545 PF02222 ATP-grasp domain AV941_02545 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AV941_02560 PF00210 Ferritin-like domain AV941_02565 PF07995 Glucose / Sorbosone dehydrogenase AV941_02570 PF00326 Prolyl oligopeptidase family AV941_02570 PF07676 WD40-like Beta Propeller Repeat AV941_02580 PF00085 Thioredoxin AV941_02595 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AV941_02600 PF00709 Adenylosuccinate synthetase AV941_02605 PF00171 Aldehyde dehydrogenase family AV941_02625 PF03553 Na+/H+ antiporter family AV941_02630 PF00933 Glycosyl hydrolase family 3 N terminal domain AV941_02640 PF07075 Protein of unknown function (DUF1343) AV941_02645 PF01380 SIS domain AV941_02650 PF00842 Alanine racemase, C-terminal domain AV941_02650 PF01168 Alanine racemase, N-terminal domain AV941_02655 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AV941_02665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AV941_02690 PF08274 PhnA Zinc-Ribbon AV941_02690 PF03831 PhnA domain AV941_02695 PF00583 Acetyltransferase (GNAT) family AV941_02725 PF01381 Helix-turn-helix AV941_02730 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB AV941_02740 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AV941_02835 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AV941_02845 PF01548 Transposase AV941_02845 PF02371 Transposase IS116/IS110/IS902 family AV941_02900 PF02803 Thiolase, C-terminal domain AV941_02900 PF00108 Thiolase, N-terminal domain AV941_02905 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AV941_02905 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AV941_02905 PF00378 Enoyl-CoA hydratase/isomerase AV941_02910 PF14718 Soluble lytic murein transglycosylase L domain AV941_02910 PF01464 Transglycosylase SLT domain AV941_02915 PF00557 Metallopeptidase family M24 AV941_02925 PF00348 Polyprenyl synthetase AV941_02930 PF00829 Ribosomal prokaryotic L21 protein AV941_02935 PF01016 Ribosomal L27 protein AV941_02940 PF01018 GTP1/OBG AV941_02940 PF01926 50S ribosome-binding GTPase AV941_02945 PF00186 Dihydrofolate reductase AV941_02950 PF00140 Sigma-70 factor, region 1.2 AV941_02950 PF04542 Sigma-70 region 2 AV941_02950 PF04539 Sigma-70 region 3 AV941_02950 PF04545 Sigma-70, region 4 AV941_02955 PF01551 Peptidase family M23 AV941_02955 PF01476 LysM domain AV941_02960 PF09335 SNARE associated Golgi protein AV941_02970 PF01142 tRNA pseudouridine synthase D (TruD) AV941_02975 PF02542 YgbB family AV941_02980 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AV941_02985 PF04977 Septum formation initiator AV941_02995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV941_02995 PF00672 HAMP domain AV941_02995 PF17200 Single Cache domain 2 AV941_03005 PF14850 DNA-binding domain of Proline dehydrogenase AV941_03005 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AV941_03005 PF01619 Proline dehydrogenase AV941_03005 PF00171 Aldehyde dehydrogenase family AV941_03025 PF02976 DNA mismatch repair enzyme MutH AV941_03030 PF00293 NUDIX domain AV941_03035 PF05524 PEP-utilising enzyme, N-terminal AV941_03035 PF00391 PEP-utilising enzyme, mobile domain AV941_03035 PF02896 PEP-utilising enzyme, TIM barrel domain AV941_03035 PF01590 GAF domain AV941_03040 PF01925 Sulfite exporter TauE/SafE AV941_03045 PF01790 Prolipoprotein diacylglyceryl transferase AV941_03050 PF00303 Thymidylate synthase AV941_03055 PF00072 Response regulator receiver domain AV941_03060 PF00072 Response regulator receiver domain AV941_03060 PF00990 Diguanylate cyclase, GGDEF domain AV941_03065 PF07690 Major Facilitator Superfamily AV941_03080 PF00849 RNA pseudouridylate synthase AV941_03085 PF00271 Helicase conserved C-terminal domain AV941_03085 PF18337 RapA N-terminal Tudor like domain AV941_03085 PF12137 RNA polymerase recycling family C-terminal AV941_03085 PF00176 SNF2 family N-terminal domain AV941_03085 PF18339 RapA N-terminal Tudor like domain 1 AV941_03095 PF13638 PIN domain AV941_03095 PF02562 PhoH-like protein AV941_03105 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AV941_03105 PF10414 Sirohaem synthase dimerisation region AV941_03110 PF00271 Helicase conserved C-terminal domain AV941_03110 PF00270 DEAD/DEAH box helicase AV941_03110 PF03880 DbpA RNA binding domain AV941_03125 PF02321 Outer membrane efflux protein AV941_03130 PF00293 NUDIX domain AV941_03140 PF00149 Calcineurin-like phosphoesterase AV941_03145 PF05728 Uncharacterised protein family (UPF0227) AV941_03150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_03150 PF00204 DNA gyrase B AV941_03150 PF01751 Toprim domain AV941_03150 PF00986 DNA gyrase B subunit, carboxyl terminus AV941_03160 PF13419 Haloacid dehalogenase-like hydrolase AV941_03185 PF04055 Radical SAM superfamily AV941_03195 PF00152 tRNA synthetases class II (D, K and N) AV941_03200 PF07715 TonB-dependent Receptor Plug Domain AV941_03200 PF00593 TonB dependent receptor AV941_03210 PF13302 Acetyltransferase (GNAT) domain AV941_03215 PF07660 Secretin and TonB N terminus short domain AV941_03215 PF07715 TonB-dependent Receptor Plug Domain AV941_03215 PF00593 TonB dependent receptor AV941_03225 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AV941_03230 PF05175 Methyltransferase small domain AV941_03240 PF01722 BolA-like protein AV941_03245 PF01569 PAP2 superfamily AV941_03255 PF08376 Nitrate and nitrite sensing AV941_03255 PF03861 ANTAR domain AV941_03270 PF00916 Sulfate permease family AV941_03270 PF01740 STAS domain AV941_03275 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AV941_03275 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV941_03275 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AV941_03275 PF18267 Rubredoxin NAD+ reductase C-terminal domain AV941_03275 PF04324 BFD-like [2Fe-2S] binding domain AV941_03285 PF04324 BFD-like [2Fe-2S] binding domain AV941_03285 PF00384 Molybdopterin oxidoreductase AV941_03285 PF01568 Molydopterin dinucleotide binding domain AV941_03285 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AV941_03290 PF10414 Sirohaem synthase dimerisation region AV941_03290 PF14824 Sirohaem biosynthesis protein central AV941_03290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AV941_03295 PF02885 Glycosyl transferase family, helical bundle domain AV941_03295 PF00591 Glycosyl transferase family, a/b domain AV941_03300 PF13426 PAS domain AV941_03300 PF08447 PAS fold AV941_03300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV941_03305 PF00005 ABC transporter AV941_03310 PF00528 Binding-protein-dependent transport system inner membrane component AV941_03315 PF00005 ABC transporter AV941_03330 PF01323 DSBA-like thioredoxin domain AV941_03335 PF00593 TonB dependent receptor AV941_03335 PF07715 TonB-dependent Receptor Plug Domain AV941_03340 PF01636 Phosphotransferase enzyme family AV941_03345 PF13746 4Fe-4S dicluster domain AV941_03345 PF12801 4Fe-4S binding domain AV941_03345 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AV941_03360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV941_03360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV941_03360 PF12806 Acetyl-CoA dehydrogenase C-terminal like AV941_03360 PF02770 Acyl-CoA dehydrogenase, middle domain AV941_03375 PF13378 Enolase C-terminal domain-like AV941_03375 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AV941_03380 PF00596 Class II Aldolase and Adducin N-terminal domain AV941_03390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV941_03395 PF00873 AcrB/AcrD/AcrF family AV941_03410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV941_03410 PF00672 HAMP domain AV941_03410 PF02743 Cache domain AV941_03415 PF00140 Sigma-70 factor, region 1.2 AV941_03415 PF04546 Sigma-70, non-essential region AV941_03415 PF04545 Sigma-70, region 4 AV941_03415 PF03979 Sigma-70 factor, region 1.1 AV941_03415 PF04539 Sigma-70 region 3 AV941_03415 PF04542 Sigma-70 region 2 AV941_03420 PF10410 DnaB-helicase binding domain of primase AV941_03420 PF08278 DNA primase DnaG DnaB-binding AV941_03420 PF08275 DNA primase catalytic core, N-terminal domain AV941_03420 PF01807 CHC2 zinc finger AV941_03430 PF01165 Ribosomal protein S21 AV941_03435 PF00814 Glycoprotease family AV941_03445 PF02660 Glycerol-3-phosphate acyltransferase AV941_03450 PF02152 Dihydroneopterin aldolase AV941_03460 PF02673 Bacitracin resistance protein BacA AV941_03465 PF01230 HIT domain AV941_03480 PF03594 Benzoate membrane transport protein AV941_03485 PF01381 Helix-turn-helix AV941_03485 PF07883 Cupin domain AV941_03490 PF04381 Putative exonuclease, RdgC AV941_03495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_03495 PF00512 His Kinase A (phospho-acceptor) domain AV941_03495 PF00497 Bacterial extracellular solute-binding proteins, family 3 AV941_03500 PF00486 Transcriptional regulatory protein, C terminal AV941_03500 PF00072 Response regulator receiver domain AV941_03505 PF11808 Phosphate regulon sensor protein PhoR AV941_03505 PF00989 PAS fold AV941_03505 PF00512 His Kinase A (phospho-acceptor) domain AV941_03505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_03510 PF12849 PBP superfamily domain AV941_03530 PF01618 MotA/TolQ/ExbB proton channel family AV941_03535 PF01618 MotA/TolQ/ExbB proton channel family AV941_03540 PF02472 Biopolymer transport protein ExbD/TolR AV941_03545 PF03544 Gram-negative bacterial TonB protein C-terminal AV941_03555 PF00072 Response regulator receiver domain AV941_03560 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AV941_03560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_03560 PF00072 Response regulator receiver domain AV941_03560 PF00672 HAMP domain AV941_03560 PF00512 His Kinase A (phospho-acceptor) domain AV941_03560 PF01627 Hpt domain AV941_03565 PF00501 AMP-binding enzyme AV941_03565 PF13193 AMP-binding enzyme C-terminal domain AV941_03575 PF07995 Glucose / Sorbosone dehydrogenase AV941_03580 PF06434 Aconitate hydratase 2 N-terminus AV941_03580 PF11791 Aconitate B N-terminal domain AV941_03580 PF00330 Aconitase family (aconitate hydratase) AV941_03585 PF01048 Phosphorylase superfamily AV941_03600 PF00330 Aconitase family (aconitate hydratase) AV941_03600 PF06434 Aconitate hydratase 2 N-terminus AV941_03600 PF11791 Aconitate B N-terminal domain AV941_03610 PF00696 Amino acid kinase family AV941_03610 PF01842 ACT domain AV941_03615 PF00672 HAMP domain AV941_03615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV941_03620 PF00149 Calcineurin-like phosphoesterase AV941_03625 PF04379 ApaG domain AV941_03630 PF00398 Ribosomal RNA adenine dimethylase AV941_03635 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AV941_03640 PF00639 PPIC-type PPIASE domain AV941_03640 PF09312 SurA N-terminal domain AV941_03645 PF03968 OstA-like protein AV941_03645 PF04453 LPS transport system D AV941_03650 PF00226 DnaJ domain AV941_03650 PF05099 Tellurite resistance protein TerB AV941_03655 PF00589 Phage integrase family AV941_03655 PF02899 Phage integrase, N-terminal SAM-like domain AV941_03660 PF10411 Disulfide bond isomerase protein N-terminus AV941_03660 PF13098 Thioredoxin-like domain AV941_03665 PF17768 RecJ OB domain AV941_03665 PF02272 DHHA1 domain AV941_03665 PF01368 DHH family AV941_03675 PF02565 Recombination protein O C terminal AV941_03675 PF11967 Recombination protein O N terminal AV941_03680 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AV941_03685 PF01648 4'-phosphopantetheinyl transferase superfamily AV941_03690 PF05958 tRNA (Uracil-5-)-methyltransferase AV941_03695 PF13291 ACT domain AV941_03695 PF04607 Region found in RelA / SpoT proteins AV941_03695 PF02824 TGS domain AV941_03700 PF03819 MazG nucleotide pyrophosphohydrolase domain AV941_03735 PF13193 AMP-binding enzyme C-terminal domain AV941_03735 PF00501 AMP-binding enzyme AV941_03745 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AV941_03755 PF00535 Glycosyl transferase family 2 AV941_03775 PF08521 Two-component sensor kinase N-terminal AV941_03775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_03775 PF00512 His Kinase A (phospho-acceptor) domain AV941_03780 PF00486 Transcriptional regulatory protein, C terminal AV941_03780 PF00072 Response regulator receiver domain AV941_03790 PF00572 Ribosomal protein L13 AV941_03795 PF00380 Ribosomal protein S9/S16 AV941_03800 PF00355 Rieske [2Fe-2S] domain AV941_03800 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AV941_03805 PF00033 Cytochrome b/b6/petB AV941_03805 PF00032 Cytochrome b(C-terminal)/b6/petD AV941_03810 PF02167 Cytochrome C1 family AV941_03815 PF02798 Glutathione S-transferase, N-terminal domain AV941_03815 PF00043 Glutathione S-transferase, C-terminal domain AV941_03820 PF04386 Stringent starvation protein B AV941_03825 PF03448 MgtE intracellular N domain AV941_03825 PF01769 Divalent cation transporter AV941_03825 PF00571 CBS domain AV941_03830 PF00381 PTS HPr component phosphorylation site AV941_03835 PF03668 P-loop ATPase protein family AV941_03840 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AV941_03845 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AV941_03850 PF00309 Sigma-54 factor, Activator interacting domain (AID) AV941_03850 PF04963 Sigma-54 factor, core binding domain AV941_03850 PF04552 Sigma-54, DNA binding domain AV941_03855 PF00005 ABC transporter AV941_03855 PF12399 Branched-chain amino acid ATP-binding cassette transporter AV941_03860 PF03968 OstA-like protein AV941_03875 PF01380 SIS domain AV941_03875 PF00571 CBS domain AV941_03880 PF01699 Sodium/calcium exchanger protein AV941_03885 PF00005 ABC transporter AV941_03890 PF02405 Permease MlaE AV941_03895 PF02470 MlaD protein AV941_03900 PF05494 MlaC protein AV941_03910 PF01722 BolA-like protein AV941_03915 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AV941_03920 PF13180 PDZ domain AV941_03925 PF00595 PDZ domain AV941_03925 PF13180 PDZ domain AV941_03935 PF03969 AFG1-like ATPase AV941_03940 PF01709 Transcriptional regulator AV941_03960 PF02355 Protein export membrane protein AV941_03960 PF07549 SecD/SecF GG Motif AV941_03960 PF07549 SecD/SecF GG Motif AV941_03960 PF02355 Protein export membrane protein AV941_03965 PF02080 TrkA-C domain AV941_03965 PF03471 Transporter associated domain AV941_03965 PF00999 Sodium/hydrogen exchanger family AV941_03975 PF00593 TonB dependent receptor AV941_03975 PF07715 TonB-dependent Receptor Plug Domain AV941_03980 PF00892 EamA-like transporter family AV941_03990 PF09308 LuxQ, periplasmic AV941_03990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_03990 PF00072 Response regulator receiver domain AV941_03990 PF00512 His Kinase A (phospho-acceptor) domain AV941_03995 PF13458 Periplasmic binding protein AV941_04010 PF00438 S-adenosylmethionine synthetase, N-terminal domain AV941_04010 PF02772 S-adenosylmethionine synthetase, central domain AV941_04010 PF02773 S-adenosylmethionine synthetase, C-terminal domain AV941_04015 PF00456 Transketolase, thiamine diphosphate binding domain AV941_04015 PF02780 Transketolase, C-terminal domain AV941_04015 PF02779 Transketolase, pyrimidine binding domain AV941_04020 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV941_04020 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AV941_04025 PF00162 Phosphoglycerate kinase AV941_04030 PF00274 Fructose-bisphosphate aldolase class-I AV941_04040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV941_04040 PF00529 HlyD membrane-fusion protein of T1SS AV941_04045 PF00873 AcrB/AcrD/AcrF family AV941_04050 PF02321 Outer membrane efflux protein AV941_04055 PF07676 WD40-like Beta Propeller Repeat AV941_04055 PF00326 Prolyl oligopeptidase family AV941_04060 PF02541 Ppx/GppA phosphatase family AV941_04065 PF17941 Polyphosphate kinase C-terminal domain 1 AV941_04065 PF13089 Polyphosphate kinase N-terminal domain AV941_04065 PF02503 Polyphosphate kinase middle domain AV941_04065 PF13090 Polyphosphate kinase C-terminal domain 2 AV941_04075 PF00528 Binding-protein-dependent transport system inner membrane component AV941_04080 PF00528 Binding-protein-dependent transport system inner membrane component AV941_04085 PF00005 ABC transporter AV941_04090 PF01895 PhoU domain AV941_04095 PF01384 Phosphate transporter family AV941_04105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_04105 PF03466 LysR substrate binding domain AV941_04115 PF03006 Haemolysin-III related AV941_04120 PF01047 MarR family AV941_04125 PF02566 OsmC-like protein AV941_04130 PF01433 Peptidase family M1 domain AV941_04140 PF09186 Domain of unknown function (DUF1949) AV941_04140 PF01205 Uncharacterized protein family UPF0029 AV941_04150 PF08447 PAS fold AV941_04150 PF13426 PAS domain AV941_04150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV941_04160 PF12320 Type 5 capsule protein repressor C-terminal domain AV941_04160 PF00149 Calcineurin-like phosphoesterase AV941_04165 PF13476 AAA domain AV941_04175 PF00375 Sodium:dicarboxylate symporter family AV941_04180 PF00491 Arginase family AV941_04185 PF01979 Amidohydrolase family AV941_04190 PF07702 UTRA domain AV941_04190 PF00392 Bacterial regulatory proteins, gntR family AV941_04200 PF00221 Aromatic amino acid lyase AV941_04225 PF12848 ABC transporter AV941_04225 PF00005 ABC transporter AV941_04245 PF00924 Mechanosensitive ion channel AV941_04310 PF00665 Integrase core domain AV941_04315 PF01695 IstB-like ATP binding protein AV941_04330 PF00589 Phage integrase family AV941_04335 PF13817 IS66 C-terminal element AV941_04335 PF03050 Transposase IS66 family AV941_04335 PF13005 zinc-finger binding domain of transposase IS66 AV941_04335 PF13007 Transposase C of IS166 homeodomain AV941_04380 PF02384 N-6 DNA Methylase AV941_04385 PF12161 HsdM N-terminal domain AV941_04385 PF02384 N-6 DNA Methylase AV941_04395 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AV941_04395 PF18766 SWI2/SNF2 ATPase AV941_04395 PF11867 Domain of unknown function (DUF3387) AV941_04410 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AV941_04445 PF04172 LrgB-like family AV941_04450 PF00072 Response regulator receiver domain AV941_04475 PF06969 HemN C-terminal domain AV941_04475 PF04055 Radical SAM superfamily AV941_04480 PF01725 Ham1 family AV941_04485 PF00271 Helicase conserved C-terminal domain AV941_04485 PF00270 DEAD/DEAH box helicase AV941_04490 PF01743 Poly A polymerase head domain AV941_04490 PF12627 Probable RNA and SrmB- binding site of polymerase A AV941_04495 PF13401 AAA domain AV941_04495 PF01471 Putative peptidoglycan binding domain AV941_04505 PF11871 Domain of unknown function (DUF3391) AV941_04505 PF01966 HD domain AV941_04510 PF00694 Aconitase C-terminal domain AV941_04515 PF00330 Aconitase family (aconitate hydratase) AV941_04520 PF00180 Isocitrate/isopropylmalate dehydrogenase AV941_04525 PF00682 HMGL-like AV941_04525 PF08502 LeuA allosteric (dimerisation) domain AV941_04535 PF03952 Enolase, N-terminal domain AV941_04535 PF00113 Enolase, C-terminal TIM barrel domain AV941_04540 PF06418 CTP synthase N-terminus AV941_04540 PF00117 Glutamine amidotransferase class-I AV941_04545 PF00488 MutS domain V AV941_04545 PF01624 MutS domain I AV941_04545 PF05192 MutS domain III AV941_04545 PF05188 MutS domain II AV941_04545 PF05190 MutS family domain IV AV941_04550 PF02464 Competence-damaged protein AV941_04555 PF00154 recA bacterial DNA recombination protein AV941_04560 PF00005 ABC transporter AV941_04565 PF12679 ABC-2 family transporter protein AV941_04580 PF00005 ABC transporter AV941_04585 PF03379 CcmB protein AV941_04590 PF01578 Cytochrome C assembly protein AV941_04595 PF04995 Heme exporter protein D (CcmD) AV941_04600 PF03100 CcmE AV941_04605 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AV941_04605 PF01578 Cytochrome C assembly protein AV941_04610 PF08534 Redoxin AV941_04615 PF03918 Cytochrome C biogenesis protein AV941_04625 PF04333 MlaA lipoprotein AV941_04630 PF16363 GDP-mannose 4,6 dehydratase AV941_04640 PF00854 POT family AV941_04650 PF00005 ABC transporter AV941_04670 PF00953 Glycosyl transferase family 4 AV941_04685 PF00483 Nucleotidyl transferase AV941_04690 PF10531 SLBB domain AV941_04695 PF00180 Isocitrate/isopropylmalate dehydrogenase AV941_04695 PF18324 Hypothetical protein TT1725 AV941_04710 PF11892 Domain of unknown function (DUF3412) AV941_04710 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AV941_04710 PF03641 Possible lysine decarboxylase AV941_04715 PF00990 Diguanylate cyclase, GGDEF domain AV941_04715 PF00072 Response regulator receiver domain AV941_04720 PF14489 QueF-like protein AV941_04720 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AV941_04725 PF07348 Syd protein (SUKH-2) AV941_04760 PF00849 RNA pseudouridylate synthase AV941_04765 PF00258 Flavodoxin AV941_04770 PF00132 Bacterial transferase hexapeptide (six repeats) AV941_04770 PF14602 Hexapeptide repeat of succinyl-transferase AV941_04770 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AV941_04775 PF01966 HD domain AV941_04775 PF01909 Nucleotidyltransferase domain AV941_04775 PF08335 GlnD PII-uridylyltransferase AV941_04780 PF00557 Metallopeptidase family M24 AV941_04785 PF00318 Ribosomal protein S2 AV941_04790 PF00889 Elongation factor TS AV941_04795 PF00696 Amino acid kinase family AV941_04800 PF01765 Ribosome recycling factor AV941_04805 PF01255 Putative undecaprenyl diphosphate synthase AV941_04815 PF13288 DXP reductoisomerase C-terminal domain AV941_04815 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AV941_04815 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AV941_04820 PF17820 PDZ domain AV941_04820 PF02163 Peptidase family M50 AV941_04825 PF07244 Surface antigen variable number repeat AV941_04825 PF01103 Surface antigen AV941_04830 PF03938 Outer membrane protein (OmpH-like) AV941_04835 PF07977 FabA-like domain AV941_04840 PF00132 Bacterial transferase hexapeptide (six repeats) AV941_04840 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AV941_04845 PF02684 Lipid-A-disaccharide synthetase AV941_04850 PF01351 Ribonuclease HII AV941_04855 PF01336 OB-fold nucleic acid binding domain AV941_04855 PF14579 Helix-hairpin-helix motif AV941_04855 PF02811 PHP domain AV941_04855 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AV941_04855 PF07733 Bacterial DNA polymerase III alpha NTPase domain AV941_04860 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AV941_04865 PF11734 TilS substrate C-terminal domain AV941_04865 PF09179 TilS substrate binding domain AV941_04865 PF01171 PP-loop family AV941_04870 PF00990 Diguanylate cyclase, GGDEF domain AV941_04870 PF03707 Bacterial signalling protein N terminal repeat AV941_04870 PF00563 EAL domain AV941_04875 PF02254 TrkA-N domain AV941_04875 PF00999 Sodium/hydrogen exchanger family AV941_04875 PF02080 TrkA-C domain AV941_04885 PF14437 MafB19-like deaminase AV941_04890 PF01464 Transglycosylase SLT domain AV941_04890 PF00497 Bacterial extracellular solute-binding proteins, family 3 AV941_04895 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AV941_04895 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AV941_04895 PF02769 AIR synthase related protein, C-terminal domain AV941_04900 PF01713 Smr domain AV941_04930 PF00529 HlyD membrane-fusion protein of T1SS AV941_04930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV941_04935 PF00196 Bacterial regulatory proteins, luxR family AV941_04935 PF00072 Response regulator receiver domain AV941_04970 PF01584 CheW-like domain AV941_04970 PF00072 Response regulator receiver domain AV941_04975 PF03705 CheR methyltransferase, all-alpha domain AV941_04975 PF01739 CheR methyltransferase, SAM binding domain AV941_04980 PF00460 Flagella basal body rod protein AV941_04985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AV941_04985 PF00460 Flagella basal body rod protein AV941_04990 PF03963 Flagellar hook capping protein - N-terminal region AV941_04990 PF13860 FlgD Ig-like domain AV941_04990 PF13861 FlgD Tudor-like domain AV941_04995 PF07559 Flagellar basal body protein FlaE AV941_04995 PF00460 Flagella basal body rod protein AV941_04995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AV941_05000 PF00460 Flagella basal body rod protein AV941_05000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AV941_05005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AV941_05005 PF00460 Flagella basal body rod protein AV941_05010 PF02107 Flagellar L-ring protein AV941_05015 PF02119 Flagellar P-ring protein AV941_05020 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AV941_05020 PF10135 Rod binding protein AV941_05040 PF00669 Bacterial flagellin N-terminal helical region AV941_05040 PF07196 Flagellin hook IN motif AV941_05040 PF00700 Bacterial flagellin C-terminal helical region AV941_05045 PF07196 Flagellin hook IN motif AV941_05045 PF00669 Bacterial flagellin N-terminal helical region AV941_05045 PF00700 Bacterial flagellin C-terminal helical region AV941_05055 PF07196 Flagellin hook IN motif AV941_05055 PF07195 Flagellar hook-associated protein 2 C-terminus AV941_05055 PF02465 Flagellar hook-associated protein 2 N-terminus AV941_05060 PF02561 Flagellar protein FliS AV941_05075 PF02719 Polysaccharide biosynthesis protein AV941_05080 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AV941_05090 PF08666 SAF domain AV941_05090 PF03102 NeuB family AV941_05110 PF13193 AMP-binding enzyme C-terminal domain AV941_05110 PF00501 AMP-binding enzyme AV941_05145 PF00535 Glycosyl transferase family 2 AV941_05155 PF03668 P-loop ATPase protein family AV941_05160 PF00535 Glycosyl transferase family 2 AV941_05165 PF03275 UDP-galactopyranose mutase AV941_05170 PF00535 Glycosyl transferase family 2 AV941_05175 PF02348 Cytidylyltransferase AV941_05180 PF00669 Bacterial flagellin N-terminal helical region AV941_05180 PF00700 Bacterial flagellin C-terminal helical region AV941_05185 PF00072 Response regulator receiver domain AV941_05185 PF02954 Bacterial regulatory protein, Fis family AV941_05185 PF00158 Sigma-54 interaction domain AV941_05190 PF00512 His Kinase A (phospho-acceptor) domain AV941_05190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_05190 PF00989 PAS fold AV941_05195 PF02954 Bacterial regulatory protein, Fis family AV941_05195 PF00158 Sigma-54 interaction domain AV941_05200 PF02049 Flagellar hook-basal body complex protein FliE AV941_05205 PF01514 Secretory protein of YscJ/FliF family AV941_05205 PF08345 Flagellar M-ring protein C-terminal AV941_05210 PF14842 FliG N-terminal domain AV941_05210 PF14841 FliG middle domain AV941_05210 PF01706 FliG C-terminal domain AV941_05220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AV941_05220 PF18269 T3SS EscN ATPase C-terminal domain AV941_05240 PF02154 Flagellar motor switch protein FliM AV941_05240 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AV941_05245 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AV941_05250 PF04347 Flagellar biosynthesis protein, FliO AV941_05255 PF00813 FliP family AV941_05260 PF01313 Bacterial export proteins, family 3 AV941_05265 PF01311 Bacterial export proteins, family 1 AV941_05270 PF01312 FlhB HrpN YscU SpaS Family AV941_05275 PF00771 FHIPEP family AV941_05280 PF00448 SRP54-type protein, GTPase domain AV941_05285 PF10609 NUBPL iron-transfer P-loop NTPase AV941_05290 PF04545 Sigma-70, region 4 AV941_05290 PF04539 Sigma-70 region 3 AV941_05290 PF04542 Sigma-70 region 2 AV941_05295 PF00072 Response regulator receiver domain AV941_05300 PF04344 Chemotaxis phosphatase, CheZ AV941_05305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_05305 PF01584 CheW-like domain AV941_05305 PF02895 Signal transducing histidine kinase, homodimeric domain AV941_05305 PF01627 Hpt domain AV941_05305 PF07194 P2 response regulator binding domain AV941_05310 PF01339 CheB methylesterase AV941_05310 PF00072 Response regulator receiver domain AV941_05315 PF13614 AAA domain AV941_05325 PF01584 CheW-like domain AV941_05335 PF04204 Homoserine O-succinyltransferase AV941_05340 PF02574 Homocysteine S-methyltransferase AV941_05340 PF00809 Pterin binding enzyme AV941_05340 PF02965 Vitamin B12 dependent methionine synthase, activation domain AV941_05340 PF02607 B12 binding domain AV941_05340 PF02310 B12 binding domain AV941_05345 PF02574 Homocysteine S-methyltransferase AV941_05345 PF00809 Pterin binding enzyme AV941_05345 PF02965 Vitamin B12 dependent methionine synthase, activation domain AV941_05345 PF02607 B12 binding domain AV941_05345 PF02310 B12 binding domain AV941_05355 PF06865 Pyrimidine/purine nucleoside phosphorylase AV941_05360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_05360 PF03466 LysR substrate binding domain AV941_05365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_05365 PF03466 LysR substrate binding domain AV941_05370 PF00484 Carbonic anhydrase AV941_05375 PF01740 STAS domain AV941_05375 PF00916 Sulfate permease family AV941_05385 PF00440 Bacterial regulatory proteins, tetR family AV941_05385 PF13977 BetI-type transcriptional repressor, C-terminal AV941_05390 PF01431 Peptidase family M13 AV941_05390 PF05649 Peptidase family M13 AV941_05400 PF02631 RecX family AV941_05405 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AV941_05405 PF02272 DHHA1 domain AV941_05405 PF01411 tRNA synthetases class II (A) AV941_05410 PF02599 Global regulator protein family AV941_05435 PF00682 HMGL-like AV941_05435 PF00364 Biotin-requiring enzyme AV941_05435 PF02436 Conserved carboxylase domain AV941_05440 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AV941_05445 PF00005 ABC transporter AV941_05450 PF00005 ABC transporter AV941_05450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AV941_05455 PF12911 N-terminal TM domain of oligopeptide transport permease C AV941_05455 PF00528 Binding-protein-dependent transport system inner membrane component AV941_05460 PF00528 Binding-protein-dependent transport system inner membrane component AV941_05465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AV941_05470 PF02954 Bacterial regulatory protein, Fis family AV941_05470 PF00158 Sigma-54 interaction domain AV941_05475 PF04012 PspA/IM30 family AV941_05490 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AV941_05495 PF18024 Helix-turn-helix domain AV941_05495 PF00158 Sigma-54 interaction domain AV941_05505 PF14497 Glutathione S-transferase, C-terminal domain AV941_05505 PF02798 Glutathione S-transferase, N-terminal domain AV941_05510 PF01037 Lrp/AsnC ligand binding domain AV941_05515 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AV941_05515 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AV941_05530 PF03301 Tryptophan 2,3-dioxygenase AV941_05540 PF07715 TonB-dependent Receptor Plug Domain AV941_05540 PF00593 TonB dependent receptor AV941_05575 PF01618 MotA/TolQ/ExbB proton channel family AV941_05580 PF01618 MotA/TolQ/ExbB proton channel family AV941_05585 PF02472 Biopolymer transport protein ExbD/TolR AV941_05590 PF03544 Gram-negative bacterial TonB protein C-terminal AV941_05600 PF17176 tRNA-binding domain AV941_05600 PF05127 Helicase AV941_05600 PF13718 GNAT acetyltransferase 2 AV941_05600 PF08351 Domain of unknown function (DUF1726) AV941_05625 PF01636 Phosphotransferase enzyme family AV941_05640 PF00583 Acetyltransferase (GNAT) family AV941_05655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_05655 PF03466 LysR substrate binding domain AV941_05660 PF07690 Major Facilitator Superfamily AV941_05665 PF00296 Luciferase-like monooxygenase AV941_05670 PF00248 Aldo/keto reductase family AV941_05685 PF13533 Biotin-lipoyl like AV941_05690 PF01047 MarR family AV941_05700 PF01381 Helix-turn-helix AV941_05705 PF07804 HipA-like C-terminal domain AV941_05705 PF13657 HipA N-terminal domain AV941_05735 PF01699 Sodium/calcium exchanger protein AV941_05740 PF00924 Mechanosensitive ion channel AV941_05740 PF05552 Conserved TM helix AV941_05745 PF11799 impB/mucB/samB family C-terminal domain AV941_05745 PF00817 impB/mucB/samB family AV941_05745 PF13438 Domain of unknown function (DUF4113) AV941_05750 PF00717 Peptidase S24-like AV941_05755 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AV941_05755 PF07733 Bacterial DNA polymerase III alpha NTPase domain AV941_05755 PF11490 DNA polymerase III polC-type N-terminus II AV941_05755 PF14579 Helix-hairpin-helix motif AV941_05755 PF02811 PHP domain AV941_05755 PF00929 Exonuclease AV941_05770 PF02384 N-6 DNA Methylase AV941_05775 PF01420 Type I restriction modification DNA specificity domain AV941_05855 PF00403 Heavy-metal-associated domain AV941_05860 PF00376 MerR family regulatory protein AV941_05860 PF09278 MerR, DNA binding AV941_05875 PF09278 MerR, DNA binding AV941_05875 PF00376 MerR family regulatory protein AV941_05880 PF01022 Bacterial regulatory protein, arsR family AV941_05890 PF01545 Cation efflux family AV941_05900 PF00403 Heavy-metal-associated domain AV941_05910 PF00873 AcrB/AcrD/AcrF family AV941_05915 PF02321 Outer membrane efflux protein AV941_05925 PF00873 AcrB/AcrD/AcrF family AV941_05930 PF00873 AcrB/AcrD/AcrF family AV941_05945 PF10411 Disulfide bond isomerase protein N-terminus AV941_05945 PF13098 Thioredoxin-like domain AV941_05960 PF10502 Signal peptidase, peptidase S26 AV941_05970 PF06834 TraU protein AV941_05975 PF06986 Type-1V conjugative transfer system mating pair stabilisation AV941_05980 PF00580 UvrD/REP helicase N-terminal domain AV941_05980 PF13361 UvrD-like helicase C-terminal domain AV941_05990 PF00082 Subtilase family AV941_05995 PF00004 ATPase family associated with various cellular activities (AAA) AV941_06015 PF00436 Single-strand binding protein family AV941_06030 PF07728 AAA domain (dynein-related subfamily) AV941_06030 PF08406 CbbQ/NirQ/NorQ C-terminal AV941_06050 PF00092 von Willebrand factor type A domain AV941_06055 PF04002 RadC-like JAB domain AV941_06075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_06075 PF03466 LysR substrate binding domain AV941_06090 PF06122 Conjugative relaxosome accessory transposon protein AV941_06135 PF01381 Helix-turn-helix AV941_06135 PF00717 Peptidase S24-like AV941_06140 PF03144 Elongation factor Tu domain 2 AV941_06140 PF16658 Class II release factor RF3, C-terminal domain AV941_06140 PF00009 Elongation factor Tu GTP binding domain AV941_06145 PF05746 DALR anticodon binding domain AV941_06145 PF00750 tRNA synthetases class I (R) AV941_06145 PF03485 Arginyl tRNA synthetase N terminal domain AV941_06165 PF00291 Pyridoxal-phosphate dependent enzyme AV941_06175 PF17158 Membrane-associated sensor, integral membrane domain AV941_06175 PF00990 Diguanylate cyclase, GGDEF domain AV941_06180 PF04224 Protein of unknown function, DUF417 AV941_06195 PF00487 Fatty acid desaturase AV941_06200 PF00175 Oxidoreductase NAD-binding domain AV941_06200 PF00970 Oxidoreductase FAD-binding domain AV941_06200 PF00042 Globin AV941_06210 PF03462 PCRF domain AV941_06210 PF00472 RF-1 domain AV941_06215 PF01336 OB-fold nucleic acid binding domain AV941_06215 PF00152 tRNA synthetases class II (D, K and N) AV941_06220 PF02558 Ketopantoate reductase PanE/ApbA AV941_06220 PF08546 Ketopantoate reductase PanE/ApbA C terminal AV941_06225 PF00849 RNA pseudouridylate synthase AV941_06235 PF00675 Insulinase (Peptidase family M16) AV941_06235 PF05193 Peptidase M16 inactive domain AV941_06240 PF04262 Glutamate-cysteine ligase AV941_06260 PF01713 Smr domain AV941_06265 PF05175 Methyltransferase small domain AV941_06270 PF01264 Chorismate synthase AV941_06280 PF04293 SpoVR like protein AV941_06285 PF04285 Protein of unknown function (DUF444) AV941_06290 PF06798 PrkA serine protein kinase C-terminal domain AV941_06290 PF08298 PrkA AAA domain AV941_06300 PF00462 Glutaredoxin AV941_06305 PF07715 TonB-dependent Receptor Plug Domain AV941_06305 PF00593 TonB dependent receptor AV941_06320 PF00593 TonB dependent receptor AV941_06320 PF07715 TonB-dependent Receptor Plug Domain AV941_06325 PF04324 BFD-like [2Fe-2S] binding domain AV941_06330 PF10417 C-terminal domain of 1-Cys peroxiredoxin AV941_06330 PF00578 AhpC/TSA family AV941_06335 PF00929 Exonuclease AV941_06340 PF18393 MotY N-terminal domain AV941_06340 PF00691 OmpA family AV941_06345 PF03009 Glycerophosphoryl diester phosphodiesterase family AV941_06350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AV941_06355 PF00313 'Cold-shock' DNA-binding domain AV941_06365 PF02225 PA domain AV941_06365 PF04389 Peptidase family M28 AV941_06370 PF00730 HhH-GPD superfamily base excision DNA repair protein AV941_06370 PF00633 Helix-hairpin-helix motif AV941_06375 PF02508 Rnf-Nqr subunit, membrane protein AV941_06380 PF04205 FMN-binding domain AV941_06385 PF03116 NQR2, RnfD, RnfE family AV941_06390 PF10531 SLBB domain AV941_06390 PF13375 RnfC Barrel sandwich hybrid domain AV941_06390 PF12838 4Fe-4S dicluster domain AV941_06390 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AV941_06395 PF04060 Putative Fe-S cluster AV941_06415 PF01554 MatE AV941_06420 PF00271 Helicase conserved C-terminal domain AV941_06420 PF02151 UvrB/uvrC motif AV941_06420 PF04851 Type III restriction enzyme, res subunit AV941_06420 PF12344 Ultra-violet resistance protein B AV941_06420 PF17757 UvrB interaction domain AV941_06430 PF06508 Queuosine biosynthesis protein QueC AV941_06435 PF04055 Radical SAM superfamily AV941_06445 PF13537 Glutamine amidotransferase domain AV941_06445 PF00733 Asparagine synthase AV941_06470 PF03600 Citrate transporter AV941_06470 PF02080 TrkA-C domain AV941_06475 PF00009 Elongation factor Tu GTP binding domain AV941_06480 PF00459 Inositol monophosphatase family AV941_06490 PF01507 Phosphoadenosine phosphosulfate reductase family AV941_06495 PF00474 Sodium:solute symporter family AV941_06500 PF17158 Membrane-associated sensor, integral membrane domain AV941_06500 PF00990 Diguanylate cyclase, GGDEF domain AV941_06510 PF08281 Sigma-70, region 4 AV941_06510 PF04542 Sigma-70 region 2 AV941_06525 PF07584 Aerotolerance regulator N-terminal AV941_06525 PF13519 von Willebrand factor type A domain AV941_06530 PF00092 von Willebrand factor type A domain AV941_06540 PF01882 Protein of unknown function DUF58 AV941_06545 PF17863 AAA lid domain AV941_06545 PF07726 ATPase family associated with various cellular activities (AAA) AV941_06550 PF02803 Thiolase, C-terminal domain AV941_06550 PF00108 Thiolase, N-terminal domain AV941_06555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AV941_06555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AV941_06555 PF00378 Enoyl-CoA hydratase/isomerase AV941_06565 PF03707 Bacterial signalling protein N terminal repeat AV941_06565 PF00990 Diguanylate cyclase, GGDEF domain AV941_06565 PF00563 EAL domain AV941_06570 PF00675 Insulinase (Peptidase family M16) AV941_06570 PF05193 Peptidase M16 inactive domain AV941_06575 PF00300 Histidine phosphatase superfamily (branch 1) AV941_06585 PF00571 CBS domain AV941_06585 PF03471 Transporter associated domain AV941_06585 PF01595 Cyclin M transmembrane N-terminal domain AV941_06590 PF01578 Cytochrome C assembly protein AV941_06595 PF00448 SRP54-type protein, GTPase domain AV941_06595 PF02978 Signal peptide binding domain AV941_06595 PF02881 SRP54-type protein, helical bundle domain AV941_06635 PF00873 AcrB/AcrD/AcrF family AV941_06640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV941_06645 PF00005 ABC transporter AV941_06645 PF00664 ABC transporter transmembrane region AV941_06660 PF00886 Ribosomal protein S16 AV941_06665 PF05239 PRC-barrel domain AV941_06665 PF01782 RimM N-terminal domain AV941_06670 PF01746 tRNA (Guanine-1)-methyltransferase AV941_06675 PF01245 Ribosomal protein L19 AV941_06680 PF03458 UPF0126 domain AV941_06685 PF00378 Enoyl-CoA hydratase/isomerase AV941_06690 PF00793 DAHP synthetase I family AV941_06695 PF01817 Chorismate mutase type II AV941_06695 PF02153 Prephenate dehydrogenase AV941_06700 PF00800 Prephenate dehydratase AV941_06700 PF01817 Chorismate mutase type II AV941_06705 PF00072 Response regulator receiver domain AV941_06710 PF01253 Translation initiation factor SUI1 AV941_06720 PF00486 Transcriptional regulatory protein, C terminal AV941_06720 PF00072 Response regulator receiver domain AV941_06730 PF00990 Diguanylate cyclase, GGDEF domain AV941_06730 PF00563 EAL domain AV941_06730 PF03707 Bacterial signalling protein N terminal repeat AV941_06740 PF00512 His Kinase A (phospho-acceptor) domain AV941_06740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_06750 PF00158 Sigma-54 interaction domain AV941_06750 PF00072 Response regulator receiver domain AV941_06755 PF00669 Bacterial flagellin N-terminal helical region AV941_06755 PF07196 Flagellin hook IN motif AV941_06755 PF00700 Bacterial flagellin C-terminal helical region AV941_06770 PF02938 GAD domain AV941_06770 PF00152 tRNA synthetases class II (D, K and N) AV941_06770 PF01336 OB-fold nucleic acid binding domain AV941_06775 PF00293 NUDIX domain AV941_06780 PF02075 Crossover junction endodeoxyribonuclease RuvC AV941_06790 PF05491 RuvB C-terminal winged helix domain AV941_06790 PF05496 Holliday junction DNA helicase RuvB P-loop domain AV941_06790 PF17864 RuvB AAA lid domain AV941_06795 PF03061 Thioesterase superfamily AV941_06800 PF01618 MotA/TolQ/ExbB proton channel family AV941_06805 PF02472 Biopolymer transport protein ExbD/TolR AV941_06815 PF07676 WD40-like Beta Propeller Repeat AV941_06815 PF04052 TolB amino-terminal domain AV941_06820 PF00691 OmpA family AV941_06825 PF13174 Tetratricopeptide repeat AV941_06825 PF16331 TolA binding protein trimerisation AV941_06850 PF02445 Quinolinate synthetase A protein AV941_06870 PF00239 Resolvase, N terminal domain AV941_06870 PF02796 Helix-turn-helix domain of resolvase AV941_06885 PF01734 Patatin-like phospholipase AV941_06890 PF02558 Ketopantoate reductase PanE/ApbA AV941_06890 PF08546 Ketopantoate reductase PanE/ApbA C terminal AV941_06900 PF00512 His Kinase A (phospho-acceptor) domain AV941_06900 PF09308 LuxQ, periplasmic AV941_06900 PF00072 Response regulator receiver domain AV941_06900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_06910 PF01118 Semialdehyde dehydrogenase, NAD binding domain AV941_06910 PF02774 Semialdehyde dehydrogenase, dimerisation domain AV941_06920 PF01292 Prokaryotic cytochrome b561 AV941_06925 PF03707 Bacterial signalling protein N terminal repeat AV941_06925 PF00990 Diguanylate cyclase, GGDEF domain AV941_06925 PF00563 EAL domain AV941_06940 PF03466 LysR substrate binding domain AV941_06940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_06945 PF01863 Protein of unknown function DUF45 AV941_06955 PF00873 AcrB/AcrD/AcrF family AV941_06965 PF08361 MAATS-type transcriptional repressor, C-terminal region AV941_06965 PF00440 Bacterial regulatory proteins, tetR family AV941_06970 PF07715 TonB-dependent Receptor Plug Domain AV941_06970 PF00593 TonB dependent receptor AV941_06980 PF00873 AcrB/AcrD/AcrF family AV941_06990 PF00990 Diguanylate cyclase, GGDEF domain AV941_07000 PF02470 MlaD protein AV941_07005 PF04403 Paraquat-inducible protein A AV941_07020 PF00152 tRNA synthetases class II (D, K and N) AV941_07020 PF01336 OB-fold nucleic acid binding domain AV941_07030 PF01699 Sodium/calcium exchanger protein AV941_07035 PF08443 RimK-like ATP-grasp domain AV941_07035 PF18030 RimK PreATP-grasp domain AV941_07055 PF00202 Aminotransferase class-III AV941_07060 PF04055 Radical SAM superfamily AV941_07060 PF06968 Biotin and Thiamin Synthesis associated domain AV941_07065 PF00155 Aminotransferase class I and II AV941_07080 PF03575 Peptidase family S51 AV941_07085 PF01451 Low molecular weight phosphotyrosine protein phosphatase AV941_07090 PF01032 FecCD transport family AV941_07095 PF00005 ABC transporter AV941_07100 PF01474 Class-II DAHP synthetase family AV941_07115 PF00005 ABC transporter AV941_07115 PF00664 ABC transporter transmembrane region AV941_07120 PF04055 Radical SAM superfamily AV941_07120 PF06463 Molybdenum Cofactor Synthesis C AV941_07130 PF00072 Response regulator receiver domain AV941_07130 PF00486 Transcriptional regulatory protein, C terminal AV941_07165 PF00749 tRNA synthetases class I (E and Q), catalytic domain AV941_07195 PF01207 Dihydrouridine synthase (Dus) AV941_07210 PF13472 GDSL-like Lipase/Acylhydrolase family AV941_07215 PF00005 ABC transporter AV941_07225 PF01370 NAD dependent epimerase/dehydratase family AV941_07225 PF08338 Domain of unknown function (DUF1731) AV941_07230 PF02152 Dihydroneopterin aldolase AV941_07235 PF01594 AI-2E family transporter AV941_07240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_07240 PF08918 PhoQ Sensor AV941_07245 PF00072 Response regulator receiver domain AV941_07245 PF00486 Transcriptional regulatory protein, C terminal AV941_07260 PF03795 YCII-related domain AV941_07265 PF00290 Tryptophan synthase alpha chain AV941_07270 PF00291 Pyridoxal-phosphate dependent enzyme AV941_07275 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AV941_07275 PF00218 Indole-3-glycerol phosphate synthase AV941_07280 PF00591 Glycosyl transferase family, a/b domain AV941_07280 PF02885 Glycosyl transferase family, helical bundle domain AV941_07285 PF00117 Glutamine amidotransferase class-I AV941_07290 PF04715 Anthranilate synthase component I, N terminal region AV941_07290 PF00425 chorismate binding enzyme AV941_07295 PF02811 PHP domain AV941_07300 PF01300 Telomere recombination AV941_07305 PF02616 Segregation and condensation protein ScpA AV941_07310 PF04079 Segregation and condensation complex subunit ScpB AV941_07315 PF01479 S4 domain AV941_07315 PF00849 RNA pseudouridylate synthase AV941_07320 PF00248 Aldo/keto reductase family AV941_07325 PF14602 Hexapeptide repeat of succinyl-transferase AV941_07325 PF12464 Maltose acetyltransferase AV941_07335 PF04286 Protein of unknown function (DUF445) AV941_07350 PF00005 ABC transporter AV941_07350 PF00664 ABC transporter transmembrane region AV941_07355 PF00529 HlyD membrane-fusion protein of T1SS AV941_07355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV941_07360 PF05724 Thiopurine S-methyltransferase (TPMT) AV941_07365 PF04355 SmpA / OmlA family AV941_07370 PF02463 RecF/RecN/SMC N terminal domain AV941_07375 PF00210 Ferritin-like domain AV941_07385 PF00465 Iron-containing alcohol dehydrogenase AV941_07400 PF00561 alpha/beta hydrolase fold AV941_07410 PF07715 TonB-dependent Receptor Plug Domain AV941_07410 PF00593 TonB dependent receptor AV941_07415 PF00196 Bacterial regulatory proteins, luxR family AV941_07415 PF00072 Response regulator receiver domain AV941_07420 PF00072 Response regulator receiver domain AV941_07420 PF01627 Hpt domain AV941_07420 PF00512 His Kinase A (phospho-acceptor) domain AV941_07420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_07420 PF00672 HAMP domain AV941_07425 PF01025 GrpE AV941_07430 PF00012 Hsp70 protein AV941_07435 PF00684 DnaJ central domain AV941_07435 PF00226 DnaJ domain AV941_07435 PF01556 DnaJ C terminal domain AV941_07440 PF01322 Cytochrome C' AV941_07445 PF00563 EAL domain AV941_07445 PF12792 CSS motif domain associated with EAL AV941_07450 PF00501 AMP-binding enzyme AV941_07450 PF13193 AMP-binding enzyme C-terminal domain AV941_07450 PF16177 Acetyl-coenzyme A synthetase N-terminus AV941_07460 PF01113 Dihydrodipicolinate reductase, N-terminus AV941_07460 PF05173 Dihydrodipicolinate reductase, C-terminus AV941_07465 PF00117 Glutamine amidotransferase class-I AV941_07465 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AV941_07470 PF02142 MGS-like domain AV941_07470 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AV941_07470 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AV941_07475 PF03449 Transcription elongation factor, N-terminal AV941_07475 PF01272 Transcription elongation factor, GreA/GreB, C-term AV941_07490 PF00011 Hsp20/alpha crystallin family AV941_07495 PF00871 Acetokinase family AV941_07500 PF01515 Phosphate acetyl/butaryl transferase AV941_07500 PF07085 DRTGG domain AV941_07515 PF00795 Carbon-nitrogen hydrolase AV941_07520 PF00571 CBS domain AV941_07520 PF03471 Transporter associated domain AV941_07525 PF02130 Uncharacterized protein family UPF0054 AV941_07530 PF02562 PhoH-like protein AV941_07535 PF00919 Uncharacterized protein family UPF0004 AV941_07535 PF04055 Radical SAM superfamily AV941_07535 PF01938 TRAM domain AV941_07540 PF01494 FAD binding domain AV941_07565 PF00593 TonB dependent receptor AV941_07565 PF07715 TonB-dependent Receptor Plug Domain AV941_07570 PF03061 Thioesterase superfamily AV941_07575 PF01613 Flavin reductase like domain AV941_07585 PF01235 Sodium:alanine symporter family AV941_07630 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AV941_07635 PF01926 50S ribosome-binding GTPase AV941_07635 PF06071 Protein of unknown function (DUF933) AV941_07640 PF01195 Peptidyl-tRNA hydrolase AV941_07645 PF14693 Ribosomal protein TL5, C-terminal domain AV941_07645 PF01386 Ribosomal L25p family AV941_07650 PF08240 Alcohol dehydrogenase GroES-like domain AV941_07650 PF00107 Zinc-binding dehydrogenase AV941_07665 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AV941_07665 PF14572 Phosphoribosyl synthetase-associated domain AV941_07675 PF00288 GHMP kinases N terminal domain AV941_07675 PF08544 GHMP kinases C terminal AV941_07680 PF03550 Outer membrane lipoprotein LolB AV941_07685 PF01488 Shikimate / quinate 5-dehydrogenase AV941_07685 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AV941_07685 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AV941_07690 PF03462 PCRF domain AV941_07690 PF00472 RF-1 domain AV941_07695 PF17827 PrmC N-terminal domain AV941_07695 PF13847 Methyltransferase domain AV941_07700 PF11849 Domain of unknown function (DUF3369) AV941_07705 PF04247 Invasion gene expression up-regulator, SirB AV941_07720 PF03466 LysR substrate binding domain AV941_07720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_07730 PF04241 Protein of unknown function (DUF423) AV941_07735 PF18125 RlmM ferredoxin-like domain AV941_07735 PF01728 FtsJ-like methyltransferase AV941_07740 PF00679 Elongation factor G C-terminus AV941_07740 PF14492 Elongation Factor G, domain II AV941_07740 PF00009 Elongation factor Tu GTP binding domain AV941_07740 PF03764 Elongation factor G, domain IV AV941_07740 PF03144 Elongation factor Tu domain 2 AV941_07750 PF02560 Cyanate lyase C-terminal domain AV941_07755 PF00069 Protein kinase domain AV941_07760 PF01226 Formate/nitrite transporter AV941_07765 PF11992 Domain of unknown function (DUF3488) AV941_07765 PF01841 Transglutaminase-like superfamily AV941_07765 PF13559 Domain of unknown function (DUF4129) AV941_07775 PF17863 AAA lid domain AV941_07775 PF07726 ATPase family associated with various cellular activities (AAA) AV941_07780 PF17206 SeqA protein N-terminal domain AV941_07780 PF03925 SeqA protein C-terminal domain AV941_07785 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AV941_07785 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AV941_07785 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AV941_07785 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AV941_07790 PF00343 Carbohydrate phosphorylase AV941_07795 PF00990 Diguanylate cyclase, GGDEF domain AV941_07795 PF03707 Bacterial signalling protein N terminal repeat AV941_07795 PF00563 EAL domain AV941_07800 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AV941_07810 PF01906 Putative heavy-metal-binding AV941_07815 PF00375 Sodium:dicarboxylate symporter family AV941_07830 PF07687 Peptidase dimerisation domain AV941_07830 PF01546 Peptidase family M20/M25/M40 AV941_07835 PF03960 ArsC family AV941_07840 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AV941_07855 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AV941_07860 PF04209 homogentisate 1,2-dioxygenase AV941_07880 PF12327 FtsZ family, C-terminal domain AV941_07880 PF00091 Tubulin/FtsZ family, GTPase domain AV941_07890 PF00563 EAL domain AV941_07890 PF00990 Diguanylate cyclase, GGDEF domain AV941_07890 PF03707 Bacterial signalling protein N terminal repeat AV941_07895 PF00990 Diguanylate cyclase, GGDEF domain AV941_07895 PF00563 EAL domain AV941_07895 PF03707 Bacterial signalling protein N terminal repeat AV941_07900 PF00873 AcrB/AcrD/AcrF family AV941_07910 PF02254 TrkA-N domain AV941_07910 PF00999 Sodium/hydrogen exchanger family AV941_07915 PF02525 Flavodoxin-like fold AV941_07925 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AV941_07930 PF00111 2Fe-2S iron-sulfur cluster binding domain AV941_07930 PF01799 [2Fe-2S] binding domain AV941_07935 PF01638 HxlR-like helix-turn-helix AV941_07940 PF05231 MASE1 AV941_07940 PF08447 PAS fold AV941_07940 PF13426 PAS domain AV941_07940 PF00563 EAL domain AV941_07940 PF08448 PAS fold AV941_07940 PF00990 Diguanylate cyclase, GGDEF domain AV941_07950 PF01979 Amidohydrolase family AV941_07955 PF00576 HIUase/Transthyretin family AV941_07970 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AV941_07970 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV941_07975 PF01799 [2Fe-2S] binding domain AV941_07975 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AV941_07975 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV941_07975 PF00111 2Fe-2S iron-sulfur cluster binding domain AV941_07985 PF00440 Bacterial regulatory proteins, tetR family AV941_07985 PF08362 YcdC-like protein, C-terminal region AV941_08000 PF00860 Permease family AV941_08005 PF00962 Adenosine/AMP deaminase AV941_08015 PF00072 Response regulator receiver domain AV941_08020 PF00990 Diguanylate cyclase, GGDEF domain AV941_08020 PF01590 GAF domain AV941_08020 PF00563 EAL domain AV941_08020 PF00360 Phytochrome region AV941_08025 PF00990 Diguanylate cyclase, GGDEF domain AV941_08025 PF00563 EAL domain AV941_08025 PF00360 Phytochrome region AV941_08025 PF01590 GAF domain AV941_08030 PF09308 LuxQ, periplasmic AV941_08030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_08030 PF00512 His Kinase A (phospho-acceptor) domain AV941_08030 PF00072 Response regulator receiver domain AV941_08040 PF07715 TonB-dependent Receptor Plug Domain AV941_08040 PF00593 TonB dependent receptor AV941_08045 PF00860 Permease family AV941_08055 PF01546 Peptidase family M20/M25/M40 AV941_08055 PF07687 Peptidase dimerisation domain AV941_08060 PF00266 Aminotransferase class-V AV941_08065 PF01925 Sulfite exporter TauE/SafE AV941_08075 PF01425 Amidase AV941_08115 PF03129 Anticodon binding domain AV941_08115 PF02824 TGS domain AV941_08115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AV941_08115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AV941_08120 PF05198 Translation initiation factor IF-3, N-terminal domain AV941_08120 PF00707 Translation initiation factor IF-3, C-terminal domain AV941_08125 PF01632 Ribosomal protein L35 AV941_08130 PF00453 Ribosomal protein L20 AV941_08135 PF01050 Mannose-6-phosphate isomerase AV941_08135 PF00483 Nucleotidyl transferase AV941_08140 PF02397 Bacterial sugar transferase AV941_08150 PF02563 Polysaccharide biosynthesis/export protein AV941_08150 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AV941_08150 PF10531 SLBB domain AV941_08155 PF13614 AAA domain AV941_08215 PF00535 Glycosyl transferase family 2 AV941_08230 PF00535 Glycosyl transferase family 2 AV941_08235 PF13439 Glycosyltransferase Family 4 AV941_08235 PF00534 Glycosyl transferases group 1 AV941_08245 PF03808 Glycosyl transferase WecB/TagA/CpsF family AV941_08260 PF01409 tRNA synthetases class II core domain (F) AV941_08260 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AV941_08265 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AV941_08265 PF01588 Putative tRNA binding domain AV941_08265 PF03483 B3/4 domain AV941_08265 PF03147 Ferredoxin-fold anticodon binding domain AV941_08265 PF03484 tRNA synthetase B5 domain AV941_08270 PF00216 Bacterial DNA-binding protein AV941_08280 PF04073 Aminoacyl-tRNA editing domain AV941_08285 PF01804 Penicillin amidase AV941_08290 PF00933 Glycosyl hydrolase family 3 N terminal domain AV941_08295 PF01923 Cobalamin adenosyltransferase AV941_08305 PF17757 UvrB interaction domain AV941_08305 PF03461 TRCF domain AV941_08305 PF00271 Helicase conserved C-terminal domain AV941_08305 PF00270 DEAD/DEAH box helicase AV941_08305 PF02559 CarD-like/TRCF domain AV941_08315 PF02687 FtsX-like permease family AV941_08315 PF12704 MacB-like periplasmic core domain AV941_08325 PF00512 His Kinase A (phospho-acceptor) domain AV941_08325 PF08448 PAS fold AV941_08325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_08325 PF13188 PAS domain AV941_08325 PF00072 Response regulator receiver domain AV941_08340 PF03372 Endonuclease/Exonuclease/phosphatase family AV941_08375 PF07690 Major Facilitator Superfamily AV941_08385 PF00483 Nucleotidyl transferase AV941_08405 PF00682 HMGL-like AV941_08410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AV941_08410 PF02785 Biotin carboxylase C-terminal domain AV941_08410 PF00289 Biotin carboxylase, N-terminal domain AV941_08410 PF00364 Biotin-requiring enzyme AV941_08415 PF00378 Enoyl-CoA hydratase/isomerase AV941_08420 PF01039 Carboxyl transferase domain AV941_08425 PF02770 Acyl-CoA dehydrogenase, middle domain AV941_08425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV941_08425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV941_08430 PF13411 MerR HTH family regulatory protein AV941_08435 PF00108 Thiolase, N-terminal domain AV941_08435 PF02803 Thiolase, C-terminal domain AV941_08445 PF00266 Aminotransferase class-V AV941_08450 PF00990 Diguanylate cyclase, GGDEF domain AV941_08450 PF17151 Periplasmic sensor domain AV941_08460 PF00929 Exonuclease AV941_08460 PF08411 Exonuclease C-terminal AV941_08465 PF00589 Phage integrase family AV941_08465 PF13356 Arm DNA-binding domain AV941_08505 PF01580 FtsK/SpoIIIE family AV941_08505 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AV941_08505 PF17854 FtsK alpha domain AV941_08505 PF09397 Ftsk gamma domain AV941_08545 PF00196 Bacterial regulatory proteins, luxR family AV941_08545 PF00072 Response regulator receiver domain AV941_08560 PF10548 P22AR C-terminal domain AV941_08560 PF02498 BRO family, N-terminal domain AV941_08630 PF03796 DnaB-like helicase C terminal domain AV941_08630 PF00772 DnaB-like helicase N terminal domain AV941_08720 PF03592 Terminase small subunit AV941_08720 PF10668 Phage terminase small subunit AV941_08820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_08820 PF00512 His Kinase A (phospho-acceptor) domain AV941_08820 PF00672 HAMP domain AV941_08820 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AV941_08820 PF01627 Hpt domain AV941_08820 PF00072 Response regulator receiver domain AV941_08825 PF01112 Asparaginase AV941_08835 PF02333 Phytase AV941_08865 PF00270 DEAD/DEAH box helicase AV941_08865 PF11898 Domain of unknown function (DUF3418) AV941_08865 PF04408 Helicase associated domain (HA2) AV941_08865 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AV941_08865 PF00271 Helicase conserved C-terminal domain AV941_08880 PF17785 PUA-like domain AV941_08880 PF10672 S-adenosylmethionine-dependent methyltransferase AV941_08885 PF00698 Acyl transferase domain AV941_08885 PF08240 Alcohol dehydrogenase GroES-like domain AV941_08885 PF16197 Ketoacyl-synthetase C-terminal extension AV941_08885 PF02801 Beta-ketoacyl synthase, C-terminal domain AV941_08885 PF00109 Beta-ketoacyl synthase, N-terminal domain AV941_08885 PF14765 Polyketide synthase dehydratase AV941_08885 PF00550 Phosphopantetheine attachment site AV941_08885 PF08659 KR domain AV941_08890 PF00075 RNase H AV941_08895 PF00929 Exonuclease AV941_08925 PF12792 CSS motif domain associated with EAL AV941_08925 PF00563 EAL domain AV941_08930 PF00005 ABC transporter AV941_08935 PF12704 MacB-like periplasmic core domain AV941_08935 PF02687 FtsX-like permease family AV941_08940 PF00375 Sodium:dicarboxylate symporter family AV941_08950 PF04996 Succinylarginine dihydrolase AV941_08960 PF01396 Topoisomerase DNA binding C4 zinc finger AV941_08960 PF08272 Topoisomerase I zinc-ribbon-like AV941_08960 PF01131 DNA topoisomerase AV941_08960 PF01751 Toprim domain AV941_08975 PF12804 MobA-like NTP transferase domain AV941_08980 PF02634 FdhD/NarQ family AV941_08985 PF00384 Molybdopterin oxidoreductase AV941_08990 PF13673 Acetyltransferase (GNAT) domain AV941_09005 PF10150 Ribonuclease E/G family AV941_09005 PF12111 Polyribonucleotide phosphorylase C terminal AV941_09005 PF00575 S1 RNA binding domain AV941_09010 PF00849 RNA pseudouridylate synthase AV941_09010 PF01479 S4 domain AV941_09015 PF13419 Haloacid dehalogenase-like hydrolase AV941_09020 PF02545 Maf-like protein AV941_09025 PF02620 Large ribosomal RNA subunit accumulation protein YceD AV941_09030 PF01783 Ribosomal L32p protein family AV941_09035 PF02504 Fatty acid synthesis protein AV941_09040 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AV941_09040 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AV941_09045 PF00698 Acyl transferase domain AV941_09055 PF00550 Phosphopantetheine attachment site AV941_09060 PF00109 Beta-ketoacyl synthase, N-terminal domain AV941_09060 PF02801 Beta-ketoacyl synthase, C-terminal domain AV941_09065 PF01063 Amino-transferase class IV AV941_09070 PF02618 YceG-like family AV941_09075 PF02223 Thymidylate kinase AV941_09080 PF09115 DNA polymerase III, delta subunit, C terminal AV941_09085 PF01026 TatD related DNase AV941_09095 PF13460 NAD(P)H-binding AV941_09100 PF00072 Response regulator receiver domain AV941_09100 PF00990 Diguanylate cyclase, GGDEF domain AV941_09125 PF00561 alpha/beta hydrolase fold AV941_09130 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AV941_09130 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AV941_09130 PF00378 Enoyl-CoA hydratase/isomerase AV941_09135 PF02803 Thiolase, C-terminal domain AV941_09135 PF00108 Thiolase, N-terminal domain AV941_09140 PF02770 Acyl-CoA dehydrogenase, middle domain AV941_09140 PF12806 Acetyl-CoA dehydrogenase C-terminal like AV941_09140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV941_09140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV941_09155 PF04198 Putative sugar-binding domain AV941_09160 PF13419 Haloacid dehalogenase-like hydrolase AV941_09170 PF08125 Mannitol dehydrogenase C-terminal domain AV941_09170 PF01232 Mannitol dehydrogenase Rossmann domain AV941_09180 PF03466 LysR substrate binding domain AV941_09180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_09185 PF01575 MaoC like domain AV941_09190 PF00924 Mechanosensitive ion channel AV941_09195 PF07715 TonB-dependent Receptor Plug Domain AV941_09195 PF00593 TonB dependent receptor AV941_09200 PF01329 Pterin 4 alpha carbinolamine dehydratase AV941_09215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_09215 PF00672 HAMP domain AV941_09215 PF17149 Periplasmic sensor domain found in signal transduction proteins AV941_09215 PF00072 Response regulator receiver domain AV941_09215 PF00512 His Kinase A (phospho-acceptor) domain AV941_09215 PF01627 Hpt domain AV941_09220 PF00072 Response regulator receiver domain AV941_09225 PF17384 RimP C-terminal SH3 domain AV941_09225 PF02576 RimP N-terminal domain AV941_09230 PF08529 NusA N-terminal domain AV941_09230 PF00575 S1 RNA binding domain AV941_09230 PF13184 NusA-like KH domain AV941_09235 PF00009 Elongation factor Tu GTP binding domain AV941_09235 PF11987 Translation-initiation factor 2 AV941_09235 PF08364 Bacterial translation initiation factor IF-2 associated region AV941_09235 PF04760 Translation initiation factor IF-2, N-terminal region AV941_09240 PF02033 Ribosome-binding factor A AV941_09245 PF09157 Pseudouridine synthase II TruB, C-terminal AV941_09245 PF01509 TruB family pseudouridylate synthase (N terminal domain) AV941_09245 PF16198 tRNA pseudouridylate synthase B C-terminal domain AV941_09255 PF00312 Ribosomal protein S15 AV941_09260 PF01479 S4 domain AV941_09260 PF00849 RNA pseudouridylate synthase AV941_09270 PF00583 Acetyltransferase (GNAT) family AV941_09270 PF00795 Carbon-nitrogen hydrolase AV941_09300 PF00578 AhpC/TSA family AV941_09300 PF10417 C-terminal domain of 1-Cys peroxiredoxin AV941_09305 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV941_09305 PF13192 Thioredoxin domain AV941_09345 PF11842 Domain of unknown function (DUF3362) AV941_09345 PF04055 Radical SAM superfamily AV941_09345 PF08497 Radical SAM N-terminal AV941_09360 PF07715 TonB-dependent Receptor Plug Domain AV941_09360 PF00593 TonB dependent receptor AV941_09365 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AV941_09365 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV941_09375 PF13416 Bacterial extracellular solute-binding protein AV941_09385 PF00005 ABC transporter AV941_09390 PF01066 CDP-alcohol phosphatidyltransferase AV941_09415 PF00563 EAL domain AV941_09415 PF00990 Diguanylate cyclase, GGDEF domain AV941_09415 PF00360 Phytochrome region AV941_09415 PF01590 GAF domain AV941_09435 PF02796 Helix-turn-helix domain of resolvase AV941_09435 PF00239 Resolvase, N terminal domain AV941_09495 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AV941_09500 PF01668 SmpB protein AV941_09505 PF03364 Polyketide cyclase / dehydrase and lipid transport AV941_09510 PF03658 RnfH family Ubiquitin AV941_09520 PF02028 BCCT, betaine/carnitine/choline family transporter AV941_09525 PF00593 TonB dependent receptor AV941_09525 PF07715 TonB-dependent Receptor Plug Domain AV941_09530 PF13181 Tetratricopeptide repeat AV941_09540 PF03618 Kinase/pyrophosphorylase AV941_09545 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AV941_09545 PF00391 PEP-utilising enzyme, mobile domain AV941_09545 PF02896 PEP-utilising enzyme, TIM barrel domain AV941_09555 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AV941_09560 PF00111 2Fe-2S iron-sulfur cluster binding domain AV941_09560 PF01799 [2Fe-2S] binding domain AV941_09580 PF08007 Cupin superfamily protein AV941_09585 PF00211 Adenylate and Guanylate cyclase catalytic domain AV941_09590 PF00206 Lyase AV941_09590 PF08328 Adenylosuccinate lyase C-terminal AV941_09595 PF04356 Protein of unknown function (DUF489) AV941_09605 PF00849 RNA pseudouridylate synthase AV941_09610 PF03971 Monomeric isocitrate dehydrogenase AV941_09615 PF00313 'Cold-shock' DNA-binding domain AV941_09620 PF02617 ATP-dependent Clp protease adaptor protein ClpS AV941_09625 PF00004 ATPase family associated with various cellular activities (AAA) AV941_09625 PF07724 AAA domain (Cdc48 subfamily) AV941_09625 PF10431 C-terminal, D2-small domain, of ClpB protein AV941_09625 PF17871 AAA lid domain AV941_09625 PF02861 Clp amino terminal domain, pathogenicity island component AV941_09630 PF01176 Translation initiation factor 1A / IF-1 AV941_09635 PF04376 Arginine-tRNA-protein transferase, N terminus AV941_09635 PF04377 Arginine-tRNA-protein transferase, C terminus AV941_09640 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AV941_09645 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV941_09650 PF04217 Protein of unknown function, DUF412 AV941_09655 PF10263 SprT-like family AV941_09660 PF01343 Peptidase family S49 AV941_09675 PF00881 Nitroreductase family AV941_09685 PF17763 Glutaminase/Asparaginase C-terminal domain AV941_09685 PF00710 Asparaginase, N-terminal AV941_09690 PF04055 Radical SAM superfamily AV941_09690 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AV941_09695 PF03099 Biotin/lipoate A/B protein ligase family AV941_09700 PF04359 Protein of unknown function (DUF493) AV941_09705 PF00768 D-alanyl-D-alanine carboxypeptidase AV941_09705 PF07943 Penicillin-binding protein 5, C-terminal domain AV941_09710 PF05036 Sporulation related domain AV941_09710 PF03330 Lytic transglycolase AV941_09715 PF01098 Cell cycle protein AV941_09720 PF00905 Penicillin binding protein transpeptidase domain AV941_09720 PF03717 Penicillin-binding Protein dimerisation domain AV941_09725 PF02590 Predicted SPOUT methyltransferase AV941_09735 PF01467 Cytidylyltransferase-like AV941_09740 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AV941_09740 PF06144 DNA polymerase III, delta subunit AV941_09745 PF04390 Lipopolysaccharide-assembly AV941_09750 PF00133 tRNA synthetases class I (I, L, M and V) AV941_09750 PF13603 Leucyl-tRNA synthetase, Domain 2 AV941_09750 PF08264 Anticodon-binding domain of tRNA AV941_09765 PF13654 AAA domain AV941_09765 PF05362 Lon protease (S16) C-terminal proteolytic domain AV941_09770 PF12697 Alpha/beta hydrolase family AV941_09775 PF00990 Diguanylate cyclase, GGDEF domain AV941_09780 PF00106 short chain dehydrogenase AV941_09785 PF01985 CRS1 / YhbY (CRM) domain AV941_09790 PF01728 FtsJ-like methyltransferase AV941_09795 PF01434 Peptidase family M41 AV941_09795 PF17862 AAA+ lid domain AV941_09795 PF00004 ATPase family associated with various cellular activities (AAA) AV941_09795 PF06480 FtsH Extracellular AV941_09800 PF00809 Pterin binding enzyme AV941_09805 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AV941_09805 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AV941_09805 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AV941_09805 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AV941_09810 PF00121 Triosephosphate isomerase AV941_09815 PF03840 Preprotein translocase SecG subunit AV941_09825 PF13188 PAS domain AV941_09825 PF00563 EAL domain AV941_09825 PF00990 Diguanylate cyclase, GGDEF domain AV941_09825 PF03707 Bacterial signalling protein N terminal repeat AV941_09835 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AV941_09835 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AV941_09840 PF02142 MGS-like domain AV941_09840 PF00781 Diacylglycerol kinase catalytic domain AV941_09870 PF00474 Sodium:solute symporter family AV941_09895 PF00575 S1 RNA binding domain AV941_09895 PF00013 KH domain AV941_09895 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AV941_09895 PF01138 3' exoribonuclease family, domain 1 AV941_09895 PF03725 3' exoribonuclease family, domain 2 AV941_09920 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AV941_09920 PF03033 Glycosyltransferase family 28 N-terminal domain AV941_09960 PF02567 Phenazine biosynthesis-like protein AV941_10030 PF03544 Gram-negative bacterial TonB protein C-terminal AV941_10035 PF13007 Transposase C of IS166 homeodomain AV941_10035 PF13817 IS66 C-terminal element AV941_10035 PF03050 Transposase IS66 family AV941_10035 PF13005 zinc-finger binding domain of transposase IS66 AV941_10055 PF07719 Tetratricopeptide repeat AV941_10055 PF13181 Tetratricopeptide repeat AV941_10070 PF02463 RecF/RecN/SMC N terminal domain AV941_10070 PF06470 SMC proteins Flexible Hinge Domain AV941_10075 PF04354 ZipA, C-terminal FtsZ-binding domain AV941_10080 PF01653 NAD-dependent DNA ligase adenylation domain AV941_10080 PF00533 BRCA1 C Terminus (BRCT) domain AV941_10080 PF12826 Helix-hairpin-helix motif AV941_10080 PF03120 NAD-dependent DNA ligase OB-fold domain AV941_10080 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AV941_10095 PF00664 ABC transporter transmembrane region AV941_10095 PF00005 ABC transporter AV941_10100 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AV941_10105 PF03966 Trm112p-like protein AV941_10110 PF02348 Cytidylyltransferase AV941_10120 PF18693 TRAM domain AV941_10120 PF04055 Radical SAM superfamily AV941_10120 PF00919 Uncharacterized protein family UPF0004 AV941_10135 PF00899 ThiF family AV941_10140 PF13409 Glutathione S-transferase, N-terminal domain AV941_10145 PF05726 Pirin C-terminal cupin domain AV941_10145 PF02678 Pirin AV941_10150 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AV941_10150 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AV941_10150 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AV941_10150 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AV941_10160 PF00285 Citrate synthase, C-terminal domain AV941_10165 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AV941_10170 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AV941_10175 PF02910 Fumarate reductase flavoprotein C-term AV941_10175 PF00890 FAD binding domain AV941_10180 PF13085 2Fe-2S iron-sulfur cluster binding domain AV941_10185 PF16870 2-oxoglutarate dehydrogenase C-terminal AV941_10185 PF02779 Transketolase, pyrimidine binding domain AV941_10185 PF00676 Dehydrogenase E1 component AV941_10185 PF16078 2-oxoglutarate dehydrogenase N-terminus AV941_10190 PF02817 e3 binding domain AV941_10190 PF00364 Biotin-requiring enzyme AV941_10190 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AV941_10195 PF08442 ATP-grasp domain AV941_10195 PF00549 CoA-ligase AV941_10200 PF00549 CoA-ligase AV941_10200 PF02629 CoA binding domain AV941_10210 PF04820 Tryptophan halogenase AV941_10220 PF18494 Pullulanase Ins domain AV941_10220 PF03714 Bacterial pullanase-associated domain AV941_10220 PF17967 Pullulanase N2 domain AV941_10220 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AV941_10220 PF11852 Domain of unknown function (DUF3372) AV941_10225 PF01734 Patatin-like phospholipase AV941_10240 PF02903 Alpha amylase, N-terminal ig-like domain AV941_10240 PF16657 Maltogenic Amylase, C-terminal domain AV941_10240 PF00128 Alpha amylase, catalytic domain AV941_10245 PF10438 Cyclo-malto-dextrinase C-terminal domain AV941_10245 PF00128 Alpha amylase, catalytic domain AV941_10245 PF09087 Cyclomaltodextrinase, N-terminal AV941_10255 PF01833 IPT/TIG domain AV941_10255 PF02806 Alpha amylase, C-terminal all-beta domain AV941_10255 PF00128 Alpha amylase, catalytic domain AV941_10255 PF00686 Starch binding domain AV941_10260 PF00356 Bacterial regulatory proteins, lacI family AV941_10265 PF00749 tRNA synthetases class I (E and Q), catalytic domain AV941_10265 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AV941_10270 PF00106 short chain dehydrogenase AV941_10275 PF12262 Bacterial virulence factor lipase N-terminal AV941_10280 PF01804 Penicillin amidase AV941_10285 PF08496 Peptidase family S49 N-terminal AV941_10285 PF01343 Peptidase family S49 AV941_10300 PF01784 NIF3 (NGG1p interacting factor 3) AV941_10310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AV941_10310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AV941_10315 PF00255 Glutathione peroxidase AV941_10320 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AV941_10320 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AV941_10330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV941_10330 PF02770 Acyl-CoA dehydrogenase, middle domain AV941_10330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV941_10335 PF00378 Enoyl-CoA hydratase/isomerase AV941_10340 PF13847 Methyltransferase domain AV941_10350 PF11893 Domain of unknown function (DUF3413) AV941_10350 PF00884 Sulfatase AV941_10355 PF07208 Protein of unknown function (DUF1414) AV941_10360 PF04245 37-kD nucleoid-associated bacterial protein AV941_10390 PF06580 Histidine kinase AV941_10390 PF07694 5TMR of 5TMR-LYT AV941_10395 PF00072 Response regulator receiver domain AV941_10395 PF04397 LytTr DNA-binding domain AV941_10400 PF00365 Phosphofructokinase AV941_10415 PF00753 Metallo-beta-lactamase superfamily AV941_10415 PF16123 Hydroxyacylglutathione hydrolase C-terminus AV941_10430 PF00497 Bacterial extracellular solute-binding proteins, family 3 AV941_10430 PF00072 Response regulator receiver domain AV941_10430 PF00989 PAS fold AV941_10430 PF00512 His Kinase A (phospho-acceptor) domain AV941_10430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_10430 PF01627 Hpt domain AV941_10450 PF00271 Helicase conserved C-terminal domain AV941_10450 PF00270 DEAD/DEAH box helicase AV941_10455 PF01144 Coenzyme A transferase AV941_10460 PF01144 Coenzyme A transferase AV941_10465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_10465 PF03466 LysR substrate binding domain AV941_10480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_10480 PF03466 LysR substrate binding domain AV941_10485 PF03313 Serine dehydratase alpha chain AV941_10485 PF03315 Serine dehydratase beta chain AV941_10490 PF00293 NUDIX domain AV941_10495 PF00425 chorismate binding enzyme AV941_10495 PF04715 Anthranilate synthase component I, N terminal region AV941_10510 PF02646 RmuC family AV941_10515 PF13860 FlgD Ig-like domain AV941_10515 PF05922 Peptidase inhibitor I9 AV941_10515 PF02225 PA domain AV941_10515 PF00082 Subtilase family AV941_10520 PF00676 Dehydrogenase E1 component AV941_10525 PF02780 Transketolase, C-terminal domain AV941_10525 PF02779 Transketolase, pyrimidine binding domain AV941_10530 PF02817 e3 binding domain AV941_10530 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AV941_10530 PF00364 Biotin-requiring enzyme AV941_10535 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AV941_10540 PF00069 Protein kinase domain AV941_10550 PF00132 Bacterial transferase hexapeptide (six repeats) AV941_10555 PF00266 Aminotransferase class-V AV941_10565 PF13185 GAF domain AV941_10575 PF04352 ProQ/FINO family AV941_10575 PF17516 ProQ C-terminal domain AV941_10580 PF00595 PDZ domain AV941_10580 PF03572 Peptidase family S41 AV941_10580 PF17804 Tail specific protease N-terminal domain AV941_10580 PF11818 C-terminal domain of tail specific protease (DUF3340) AV941_10585 PF00209 Sodium:neurotransmitter symporter family AV941_10595 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AV941_10595 PF01433 Peptidase family M1 domain AV941_10595 PF11940 Domain of unknown function (DUF3458) Ig-like fold AV941_10610 PF07044 Protein of unknown function (DUF1329) AV941_10625 PF05088 Bacterial NAD-glutamate dehydrogenase AV941_10630 PF01180 Dihydroorotate dehydrogenase AV941_10635 PF10672 S-adenosylmethionine-dependent methyltransferase AV941_10635 PF01170 Putative RNA methylase family UPF0020 AV941_10635 PF02926 THUMP domain AV941_10655 PF04957 Ribosome modulation factor AV941_10660 PF07977 FabA-like domain AV941_10670 PF00875 DNA photolyase AV941_10670 PF03441 FAD binding domain of DNA photolyase AV941_10675 PF00875 DNA photolyase AV941_10675 PF03441 FAD binding domain of DNA photolyase AV941_10680 PF03441 FAD binding domain of DNA photolyase AV941_10680 PF00875 DNA photolyase AV941_10685 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AV941_10695 PF02899 Phage integrase, N-terminal SAM-like domain AV941_10695 PF00589 Phage integrase family AV941_10705 PF01219 Prokaryotic diacylglycerol kinase AV941_10710 PF00582 Universal stress protein family AV941_10720 PF01645 Conserved region in glutamate synthase AV941_10725 PF00999 Sodium/hydrogen exchanger family AV941_10730 PF00210 Ferritin-like domain AV941_10735 PF00210 Ferritin-like domain AV941_10745 PF00115 Cytochrome C and Quinol oxidase polypeptide I AV941_10760 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AV941_10760 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AV941_10770 PF00403 Heavy-metal-associated domain AV941_10785 PF00027 Cyclic nucleotide-binding domain AV941_10785 PF13545 Crp-like helix-turn-helix domain AV941_10790 PF00582 Universal stress protein family AV941_10795 PF01171 PP-loop family AV941_10800 PF01734 Patatin-like phospholipase AV941_10820 PF01810 LysE type translocator AV941_10825 PF02146 Sir2 family AV941_10830 PF00581 Rhodanese-like domain AV941_10835 PF08534 Redoxin AV941_10860 PF01066 CDP-alcohol phosphatidyltransferase AV941_10865 PF01541 GIY-YIG catalytic domain AV941_10865 PF08459 UvrC Helix-hairpin-helix N-terminal AV941_10865 PF02151 UvrB/uvrC motif AV941_10870 PF00196 Bacterial regulatory proteins, luxR family AV941_10870 PF00072 Response regulator receiver domain AV941_10875 PF00155 Aminotransferase class I and II AV941_10895 PF07681 DoxX AV941_10900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_10900 PF03466 LysR substrate binding domain AV941_10915 PF01027 Inhibitor of apoptosis-promoting Bax1 AV941_10920 PF02635 DsrE/DsrF-like family AV941_10935 PF04358 DsrC like protein AV941_10950 PF00593 TonB dependent receptor AV941_10950 PF07715 TonB-dependent Receptor Plug Domain AV941_10955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AV941_10955 PF02403 Seryl-tRNA synthetase N-terminal domain AV941_10960 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AV941_10965 PF16193 AAA C-terminal domain AV941_10965 PF00004 ATPase family associated with various cellular activities (AAA) AV941_10965 PF12002 MgsA AAA+ ATPase C terminal AV941_10975 PF01580 FtsK/SpoIIIE family AV941_10975 PF17854 FtsK alpha domain AV941_10975 PF09397 Ftsk gamma domain AV941_10975 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AV941_10980 PF01037 Lrp/AsnC ligand binding domain AV941_10985 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AV941_10985 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AV941_10990 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AV941_10995 PF18073 Rubredoxin metal binding domain AV941_11010 PF00216 Bacterial DNA-binding protein AV941_11015 PF00575 S1 RNA binding domain AV941_11020 PF02224 Cytidylate kinase AV941_11025 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AV941_11030 PF00266 Aminotransferase class-V AV941_11035 PF00521 DNA gyrase/topoisomerase IV, subunit A AV941_11035 PF03989 DNA gyrase C-terminal domain, beta-propeller AV941_11045 PF03477 ATP cone domain AV941_11045 PF00317 Ribonucleotide reductase, all-alpha domain AV941_11045 PF02867 Ribonucleotide reductase, barrel domain AV941_11050 PF00268 Ribonucleotide reductase, small chain AV941_11055 PF00111 2Fe-2S iron-sulfur cluster binding domain AV941_11065 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AV941_11065 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV941_11070 PF00563 EAL domain AV941_11070 PF00990 Diguanylate cyclase, GGDEF domain AV941_11070 PF03707 Bacterial signalling protein N terminal repeat AV941_11075 PF00892 EamA-like transporter family AV941_11080 PF01259 SAICAR synthetase AV941_11085 PF06804 NlpB/DapX lipoprotein AV941_11090 PF00701 Dihydrodipicolinate synthetase family AV941_11100 PF00578 AhpC/TSA family AV941_11105 PF01594 AI-2E family transporter AV941_11110 PF01435 Peptidase family M48 AV941_11120 PF03960 ArsC family AV941_11125 PF03358 NADPH-dependent FMN reductase AV941_11135 PF00308 Bacterial dnaA protein AV941_11145 PF00586 AIR synthase related protein, N-terminal domain AV941_11145 PF02769 AIR synthase related protein, C-terminal domain AV941_11150 PF00551 Formyl transferase AV941_11160 PF09317 Domain of unknown function (DUF1974) AV941_11160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV941_11160 PF02770 Acyl-CoA dehydrogenase, middle domain AV941_11160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV941_11170 PF00072 Response regulator receiver domain AV941_11170 PF00196 Bacterial regulatory proteins, luxR family AV941_11175 PF13649 Methyltransferase domain AV941_11180 PF08003 Protein of unknown function (DUF1698) AV941_11185 PF00485 Phosphoribulokinase / Uridine kinase family AV941_11200 PF00128 Alpha amylase, catalytic domain AV941_11205 PF13419 Haloacid dehalogenase-like hydrolase AV941_11210 PF00994 Probable molybdopterin binding domain AV941_11210 PF03454 MoeA C-terminal region (domain IV) AV941_11210 PF03453 MoeA N-terminal region (domain I and II) AV941_11215 PF01554 MatE AV941_11230 PF17862 AAA+ lid domain AV941_11230 PF00004 ATPase family associated with various cellular activities (AAA) AV941_11230 PF01434 Peptidase family M41 AV941_11235 PF00291 Pyridoxal-phosphate dependent enzyme AV941_11265 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system AV941_11305 PF02567 Phenazine biosynthesis-like protein AV941_11315 PF00378 Enoyl-CoA hydratase/isomerase AV941_11330 PF00255 Glutathione peroxidase AV941_11335 PF02525 Flavodoxin-like fold AV941_11345 PF01053 Cys/Met metabolism PLP-dependent enzyme AV941_11360 PF00155 Aminotransferase class I and II AV941_11365 PF10459 Peptidase S46 AV941_11370 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AV941_11385 PF02770 Acyl-CoA dehydrogenase, middle domain AV941_11385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV941_11385 PF12806 Acetyl-CoA dehydrogenase C-terminal like AV941_11385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV941_11390 PF07883 Cupin domain AV941_11390 PF12833 Helix-turn-helix domain AV941_11395 PF07715 TonB-dependent Receptor Plug Domain AV941_11395 PF00593 TonB dependent receptor AV941_11405 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AV941_11405 PF00326 Prolyl oligopeptidase family AV941_11410 PF00873 AcrB/AcrD/AcrF family AV941_11415 PF13533 Biotin-lipoyl like AV941_11425 PF00766 Electron transfer flavoprotein FAD-binding domain AV941_11425 PF01012 Electron transfer flavoprotein domain AV941_11430 PF01012 Electron transfer flavoprotein domain AV941_11440 PF00816 H-NS histone family AV941_11445 PF00561 alpha/beta hydrolase fold AV941_11455 PF00258 Flavodoxin AV941_11460 PF00672 HAMP domain AV941_11460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV941_11465 PF01475 Ferric uptake regulator family AV941_11470 PF01063 Amino-transferase class IV AV941_11475 PF02626 Carboxyltransferase domain, subdomain A and B AV941_11480 PF02682 Carboxyltransferase domain, subdomain C and D AV941_11485 PF03746 LamB/YcsF family AV941_11490 PF17783 CvfB-like winged helix domain AV941_11490 PF13509 S1 domain AV941_11495 PF02566 OsmC-like protein AV941_11500 PF13533 Biotin-lipoyl like AV941_11505 PF00873 AcrB/AcrD/AcrF family AV941_11510 PF00873 AcrB/AcrD/AcrF family AV941_11525 PF00155 Aminotransferase class I and II AV941_11545 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AV941_11545 PF00034 Cytochrome c AV941_11545 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AV941_11550 PF00111 2Fe-2S iron-sulfur cluster binding domain AV941_11550 PF01799 [2Fe-2S] binding domain AV941_11575 PF12146 Serine aminopeptidase, S33 AV941_11580 PF06719 AraC-type transcriptional regulator N-terminus AV941_11580 PF12833 Helix-turn-helix domain AV941_11595 PF01966 HD domain AV941_11595 PF13286 Phosphohydrolase-associated domain AV941_11600 PF00174 Oxidoreductase molybdopterin binding domain AV941_11605 PF01794 Ferric reductase like transmembrane component AV941_11620 PF02810 SEC-C motif AV941_11625 PF00107 Zinc-binding dehydrogenase AV941_11625 PF08240 Alcohol dehydrogenase GroES-like domain AV941_11635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV941_11635 PF02770 Acyl-CoA dehydrogenase, middle domain AV941_11635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV941_11645 PF07715 TonB-dependent Receptor Plug Domain AV941_11645 PF00593 TonB dependent receptor AV941_11665 PF04055 Radical SAM superfamily AV941_11665 PF06969 HemN C-terminal domain AV941_11670 PF03459 TOBE domain AV941_11670 PF00005 ABC transporter AV941_11675 PF00528 Binding-protein-dependent transport system inner membrane component AV941_11685 PF02391 MoaE protein AV941_11690 PF02597 ThiS family AV941_11695 PF01967 MoaC family AV941_11700 PF00994 Probable molybdopterin binding domain AV941_11705 PF00899 ThiF family AV941_11715 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AV941_11720 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AV941_11735 PF00155 Aminotransferase class I and II AV941_11740 PF03435 Saccharopine dehydrogenase NADP binding domain AV941_11745 PF00155 Aminotransferase class I and II AV941_11760 PF08267 Cobalamin-independent synthase, N-terminal domain AV941_11760 PF01717 Cobalamin-independent synthase, Catalytic domain AV941_11765 PF00593 TonB dependent receptor AV941_11765 PF07715 TonB-dependent Receptor Plug Domain AV941_11775 PF00892 EamA-like transporter family AV941_11790 PF13538 UvrD-like helicase C-terminal domain AV941_11795 PF13361 UvrD-like helicase C-terminal domain AV941_11795 PF00580 UvrD/REP helicase N-terminal domain AV941_11795 PF12705 PD-(D/E)XK nuclease superfamily AV941_11800 PF17946 RecC C-terminal domain AV941_11815 PF00501 AMP-binding enzyme AV941_11820 PF00563 EAL domain AV941_11820 PF00990 Diguanylate cyclase, GGDEF domain AV941_11820 PF01590 GAF domain AV941_11820 PF00360 Phytochrome region AV941_11825 PF17770 Ribonuclease J C-terminal domain AV941_11825 PF12706 Beta-lactamase superfamily domain AV941_11825 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AV941_11840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_11840 PF03466 LysR substrate binding domain AV941_11860 PF01022 Bacterial regulatory protein, arsR family AV941_11870 PF03466 LysR substrate binding domain AV941_11870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_11880 PF02954 Bacterial regulatory protein, Fis family AV941_11880 PF00072 Response regulator receiver domain AV941_11880 PF00158 Sigma-54 interaction domain AV941_11890 PF01590 GAF domain AV941_11890 PF00512 His Kinase A (phospho-acceptor) domain AV941_11890 PF08446 PAS fold AV941_11890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_11890 PF00360 Phytochrome region AV941_11895 PF00072 Response regulator receiver domain AV941_11900 PF09308 LuxQ, periplasmic AV941_11900 PF00512 His Kinase A (phospho-acceptor) domain AV941_11900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_11900 PF00072 Response regulator receiver domain AV941_11945 PF07023 Protein of unknown function (DUF1315) AV941_11960 PF01235 Sodium:alanine symporter family AV941_11965 PF00246 Zinc carboxypeptidase AV941_11965 PF18027 Cytosolic carboxypeptidase N-terminal domain AV941_11970 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV941_11970 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AV941_11980 PF01641 SelR domain AV941_11985 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AV941_11985 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AV941_11990 PF00128 Alpha amylase, catalytic domain AV941_11990 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AV941_11995 PF00128 Alpha amylase, catalytic domain AV941_11995 PF02806 Alpha amylase, C-terminal all-beta domain AV941_11995 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AV941_12000 PF02446 4-alpha-glucanotransferase AV941_12005 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV941_12005 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AV941_12010 PF01263 Aldose 1-epimerase AV941_12015 PF01081 KDPG and KHG aldolase AV941_12020 PF02685 Glucokinase AV941_12025 PF00920 Dehydratase family AV941_12030 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AV941_12040 PF01418 Helix-turn-helix domain, rpiR family AV941_12040 PF01380 SIS domain AV941_12045 PF02887 Pyruvate kinase, alpha/beta domain AV941_12045 PF00224 Pyruvate kinase, barrel domain AV941_12050 PF07969 Amidohydrolase family AV941_12055 PF12833 Helix-turn-helix domain AV941_12055 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AV941_12060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV941_12060 PF12806 Acetyl-CoA dehydrogenase C-terminal like AV941_12060 PF02770 Acyl-CoA dehydrogenase, middle domain AV941_12060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV941_12065 PF01012 Electron transfer flavoprotein domain AV941_12070 PF01012 Electron transfer flavoprotein domain AV941_12070 PF00766 Electron transfer flavoprotein FAD-binding domain AV941_12080 PF03600 Citrate transporter AV941_12080 PF02080 TrkA-C domain AV941_12095 PF01380 SIS domain AV941_12095 PF01418 Helix-turn-helix domain, rpiR family AV941_12100 PF00224 Pyruvate kinase, barrel domain AV941_12100 PF02887 Pyruvate kinase, alpha/beta domain AV941_12105 PF01048 Phosphorylase superfamily AV941_12125 PF04972 BON domain AV941_12155 PF09347 Domain of unknown function (DUF1989) AV941_12185 PF04231 Endonuclease I AV941_12190 PF02743 Cache domain AV941_12190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV941_12190 PF00672 HAMP domain AV941_12205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_12205 PF03466 LysR substrate binding domain AV941_12210 PF00465 Iron-containing alcohol dehydrogenase AV941_12215 PF00563 EAL domain AV941_12215 PF00990 Diguanylate cyclase, GGDEF domain AV941_12215 PF08447 PAS fold AV941_12215 PF08448 PAS fold AV941_12225 PF11849 Domain of unknown function (DUF3369) AV941_12230 PF00497 Bacterial extracellular solute-binding proteins, family 3 AV941_12230 PF00512 His Kinase A (phospho-acceptor) domain AV941_12230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_12250 PF00145 C-5 cytosine-specific DNA methylase AV941_12310 PF00939 Sodium:sulfate symporter transmembrane region AV941_12315 PF00692 dUTPase AV941_12320 PF10609 NUBPL iron-transfer P-loop NTPase AV941_12325 PF08264 Anticodon-binding domain of tRNA AV941_12325 PF09334 tRNA synthetases class I (M) AV941_12325 PF01588 Putative tRNA binding domain AV941_12330 PF05552 Conserved TM helix AV941_12330 PF00924 Mechanosensitive ion channel AV941_12335 PF08241 Methyltransferase domain AV941_12340 PF16123 Hydroxyacylglutathione hydrolase C-terminus AV941_12340 PF00753 Metallo-beta-lactamase superfamily AV941_12345 PF01476 LysM domain AV941_12345 PF01464 Transglycosylase SLT domain AV941_12370 PF09190 DALR domain AV941_12370 PF01406 tRNA synthetases class I (C) catalytic domain AV941_12375 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AV941_12380 PF00149 Calcineurin-like phosphoesterase AV941_12390 PF01145 SPFH domain / Band 7 family AV941_12390 PF15975 Flotillin AV941_12400 PF00128 Alpha amylase, catalytic domain AV941_12405 PF01638 HxlR-like helix-turn-helix AV941_12410 PF08240 Alcohol dehydrogenase GroES-like domain AV941_12410 PF00107 Zinc-binding dehydrogenase AV941_12415 PF18011 C-terminal domain found in long catalases AV941_12415 PF06628 Catalase-related immune-responsive AV941_12415 PF00199 Catalase AV941_12420 PF08240 Alcohol dehydrogenase GroES-like domain AV941_12420 PF00107 Zinc-binding dehydrogenase AV941_12425 PF03466 LysR substrate binding domain AV941_12425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_12450 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AV941_12460 PF00156 Phosphoribosyl transferase domain AV941_12465 PF02674 Colicin V production protein AV941_12470 PF05036 Sporulation related domain AV941_12475 PF02875 Mur ligase family, glutamate ligase domain AV941_12475 PF08245 Mur ligase middle domain AV941_12480 PF17848 Acetyl-coA carboxylase zinc finger domain AV941_12480 PF01039 Carboxyl transferase domain AV941_12485 PF01416 tRNA pseudouridine synthase AV941_12495 PF02774 Semialdehyde dehydrogenase, dimerisation domain AV941_12495 PF01118 Semialdehyde dehydrogenase, NAD binding domain AV941_12500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AV941_12500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AV941_12500 PF11890 Domain of unknown function (DUF3410) AV941_12505 PF00596 Class II Aldolase and Adducin N-terminal domain AV941_12520 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AV941_12525 PF00144 Beta-lactamase AV941_12530 PF02801 Beta-ketoacyl synthase, C-terminal domain AV941_12530 PF00109 Beta-ketoacyl synthase, N-terminal domain AV941_12535 PF00501 AMP-binding enzyme AV941_12535 PF13193 AMP-binding enzyme C-terminal domain AV941_12545 PF01266 FAD dependent oxidoreductase AV941_12545 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AV941_12580 PF13411 MerR HTH family regulatory protein AV941_12585 PF08240 Alcohol dehydrogenase GroES-like domain AV941_12585 PF00107 Zinc-binding dehydrogenase AV941_12615 PF00005 ABC transporter AV941_12620 PF02667 Short chain fatty acid transporter AV941_12625 PF01627 Hpt domain AV941_12625 PF00512 His Kinase A (phospho-acceptor) domain AV941_12625 PF00072 Response regulator receiver domain AV941_12625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_12625 PF00672 HAMP domain AV941_12625 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AV941_12630 PF02627 Carboxymuconolactone decarboxylase family AV941_12635 PF00675 Insulinase (Peptidase family M16) AV941_12635 PF05193 Peptidase M16 inactive domain AV941_12650 PF04315 Elongation factor P hydroxylase AV941_12680 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AV941_12680 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV941_12685 PF00378 Enoyl-CoA hydratase/isomerase AV941_12690 PF00440 Bacterial regulatory proteins, tetR family AV941_12690 PF02909 Tetracyclin repressor-like, C-terminal domain AV941_12695 PF05199 GMC oxidoreductase AV941_12695 PF00732 GMC oxidoreductase AV941_12705 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AV941_12705 PF06974 Protein of unknown function (DUF1298) AV941_12715 PF04286 Protein of unknown function (DUF445) AV941_12740 PF00326 Prolyl oligopeptidase family AV941_12740 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AV941_12745 PF00392 Bacterial regulatory proteins, gntR family AV941_12745 PF07840 FadR C-terminal domain AV941_12750 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AV941_12755 PF02600 Disulfide bond formation protein DsbB AV941_12760 PF13302 Acetyltransferase (GNAT) domain AV941_12770 PF03692 Putative zinc- or iron-chelating domain AV941_12775 PF01557 Fumarylacetoacetate (FAA) hydrolase family AV941_12785 PF05166 YcgL domain AV941_12790 PF01612 3'-5' exonuclease AV941_12790 PF00570 HRDC domain AV941_12795 PF13193 AMP-binding enzyme C-terminal domain AV941_12795 PF00501 AMP-binding enzyme AV941_12800 PF12697 Alpha/beta hydrolase family AV941_12815 PF00814 Glycoprotease family AV941_12820 PF06733 DEAD_2 AV941_12820 PF13307 Helicase C-terminal domain AV941_12845 PF00128 Alpha amylase, catalytic domain AV941_12870 PF07715 TonB-dependent Receptor Plug Domain AV941_12870 PF00593 TonB dependent receptor AV941_12880 PF01634 ATP phosphoribosyltransferase AV941_12880 PF08029 HisG, C-terminal domain AV941_12885 PF00815 Histidinol dehydrogenase AV941_12890 PF00155 Aminotransferase class I and II AV941_12895 PF00475 Imidazoleglycerol-phosphate dehydratase AV941_12900 PF00117 Glutamine amidotransferase class-I AV941_12905 PF00977 Histidine biosynthesis protein AV941_12910 PF00977 Histidine biosynthesis protein AV941_12915 PF01502 Phosphoribosyl-AMP cyclohydrolase AV941_12915 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AV941_12930 PF01226 Formate/nitrite transporter AV941_12935 PF00675 Insulinase (Peptidase family M16) AV941_12935 PF05193 Peptidase M16 inactive domain AV941_12940 PF10502 Signal peptidase, peptidase S26 AV941_12960 PF05191 Adenylate kinase, active site lid AV941_12965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_12965 PF00183 Hsp90 protein AV941_12970 PF02132 RecR protein AV941_12970 PF13662 Toprim domain AV941_12985 PF02575 YbaB/EbfC DNA-binding family AV941_12990 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AV941_12990 PF12170 DNA polymerase III tau subunit V interacting with alpha AV941_12990 PF12169 DNA polymerase III subunits gamma and tau domain III AV941_12995 PF00156 Phosphoribosyl transferase domain AV941_13005 PF05114 Protein of unknown function (DUF692) AV941_13015 PF12704 MacB-like periplasmic core domain AV941_13015 PF02687 FtsX-like permease family AV941_13015 PF00005 ABC transporter AV941_13025 PF00563 EAL domain AV941_13025 PF00360 Phytochrome region AV941_13025 PF00990 Diguanylate cyclase, GGDEF domain AV941_13025 PF01590 GAF domain AV941_13045 PF01066 CDP-alcohol phosphatidyltransferase AV941_13065 PF09330 D-lactate dehydrogenase, membrane binding AV941_13065 PF01565 FAD binding domain AV941_13070 PF00004 ATPase family associated with various cellular activities (AAA) AV941_13070 PF07724 AAA domain (Cdc48 subfamily) AV941_13070 PF02861 Clp amino terminal domain, pathogenicity island component AV941_13070 PF17871 AAA lid domain AV941_13070 PF10431 C-terminal, D2-small domain, of ClpB protein AV941_13080 PF01479 S4 domain AV941_13080 PF00849 RNA pseudouridylate synthase AV941_13085 PF13525 Outer membrane lipoprotein AV941_13095 PF04545 Sigma-70, region 4 AV941_13095 PF04542 Sigma-70 region 2 AV941_13110 PF00106 short chain dehydrogenase AV941_13130 PF13677 Membrane MotB of proton-channel complex MotA/MotB AV941_13130 PF00691 OmpA family AV941_13135 PF01618 MotA/TolQ/ExbB proton channel family AV941_13140 PF02609 Exonuclease VII small subunit AV941_13145 PF00348 Polyprenyl synthetase AV941_13150 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AV941_13150 PF02779 Transketolase, pyrimidine binding domain AV941_13150 PF02780 Transketolase, C-terminal domain AV941_13155 PF04608 Phosphatidylglycerophosphatase A AV941_13160 PF00586 AIR synthase related protein, N-terminal domain AV941_13160 PF02769 AIR synthase related protein, C-terminal domain AV941_13165 PF01029 NusB family AV941_13170 PF00885 6,7-dimethyl-8-ribityllumazine synthase AV941_13175 PF00925 GTP cyclohydrolase II AV941_13175 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AV941_13180 PF00677 Lumazine binding domain AV941_13185 PF01872 RibD C-terminal domain AV941_13185 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AV941_13190 PF03477 ATP cone domain AV941_13195 PF00464 Serine hydroxymethyltransferase AV941_13205 PF12848 ABC transporter AV941_13205 PF00005 ABC transporter AV941_13215 PF18073 Rubredoxin metal binding domain AV941_13225 PF18429 Domain of unknown function (DUF5609) AV941_13235 PF01026 TatD related DNase AV941_13240 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AV941_13240 PF01243 Pyridoxamine 5'-phosphate oxidase AV941_13245 PF07650 KH domain AV941_13245 PF01926 50S ribosome-binding GTPase AV941_13250 PF14622 Ribonuclease-III-like AV941_13250 PF00035 Double-stranded RNA binding motif AV941_13255 PF10502 Signal peptidase, peptidase S26 AV941_13260 PF06421 GTP-binding protein LepA C-terminus AV941_13260 PF03144 Elongation factor Tu domain 2 AV941_13260 PF00009 Elongation factor Tu GTP binding domain AV941_13260 PF00679 Elongation factor G C-terminus AV941_13270 PF17188 MucB/RseB C-terminal domain AV941_13270 PF03888 MucB/RseB N-terminal domain AV941_13280 PF08281 Sigma-70, region 4 AV941_13280 PF04542 Sigma-70 region 2 AV941_13285 PF02910 Fumarate reductase flavoprotein C-term AV941_13285 PF00890 FAD binding domain AV941_13300 PF03937 Flavinator of succinate dehydrogenase AV941_13310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AV941_13315 PF00543 Nitrogen regulatory protein P-II AV941_13320 PF02540 NAD synthase AV941_13355 PF00114 Pilin (bacterial filament) AV941_13355 PF07963 Prokaryotic N-terminal methylation motif AV941_13380 PF02401 LytB protein AV941_13385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AV941_13390 PF01252 Signal peptidase (SPase) II AV941_13395 PF06827 Zinc finger found in FPG and IleRS AV941_13395 PF00133 tRNA synthetases class I (I, L, M and V) AV941_13395 PF08264 Anticodon-binding domain of tRNA AV941_13400 PF06574 FAD synthetase AV941_13400 PF01687 Riboflavin kinase AV941_13405 PF03023 Lipid II flippase MurJ AV941_13410 PF01649 Ribosomal protein S20 AV941_13415 PF00106 short chain dehydrogenase AV941_13430 PF01758 Sodium Bile acid symporter family AV941_13450 PF01546 Peptidase family M20/M25/M40 AV941_13450 PF07687 Peptidase dimerisation domain AV941_13455 PF13145 PPIC-type PPIASE domain AV941_13460 PF00216 Bacterial DNA-binding protein AV941_13470 PF05362 Lon protease (S16) C-terminal proteolytic domain AV941_13470 PF00004 ATPase family associated with various cellular activities (AAA) AV941_13470 PF02190 ATP-dependent protease La (LON) substrate-binding domain AV941_13475 PF10431 C-terminal, D2-small domain, of ClpB protein AV941_13475 PF06689 ClpX C4-type zinc finger AV941_13475 PF07724 AAA domain (Cdc48 subfamily) AV941_13480 PF00574 Clp protease AV941_13485 PF05697 Bacterial trigger factor protein (TF) AV941_13485 PF05698 Bacterial trigger factor protein (TF) C-terminus AV941_13485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AV941_13520 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AV941_13520 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AV941_13530 PF01980 tRNA-methyltransferase O AV941_13530 PF18389 TrmO C-terminal domain AV941_13535 PF03129 Anticodon binding domain AV941_13535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AV941_13540 PF00753 Metallo-beta-lactamase superfamily AV941_13540 PF12706 Beta-lactamase superfamily domain AV941_13545 PF02253 Phospholipase A1 AV941_13550 PF00850 Histone deacetylase domain AV941_13555 PF02743 Cache domain AV941_13555 PF00672 HAMP domain AV941_13555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV941_13560 PF00958 GMP synthase C terminal domain AV941_13560 PF02540 NAD synthase AV941_13560 PF00117 Glutamine amidotransferase class-I AV941_13565 PF00571 CBS domain AV941_13565 PF00478 IMP dehydrogenase / GMP reductase domain AV941_13570 PF02601 Exonuclease VII, large subunit AV941_13570 PF13742 OB-fold nucleic acid binding domain AV941_13585 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AV941_13585 PF01926 50S ribosome-binding GTPase AV941_13590 PF13360 PQQ-like domain AV941_13595 PF09976 Tetratricopeptide repeat-like domain AV941_13600 PF13393 Histidyl-tRNA synthetase AV941_13600 PF03129 Anticodon binding domain AV941_13605 PF04551 GcpE protein AV941_13610 PF13464 Domain of unknown function (DUF4115) AV941_13620 PF04055 Radical SAM superfamily AV941_13625 PF00334 Nucleoside diphosphate kinase AV941_13630 PF02657 Fe-S metabolism associated domain AV941_13635 PF01883 Iron-sulfur cluster assembly protein AV941_13640 PF01521 Iron-sulphur cluster biosynthesis AV941_13645 PF00266 Aminotransferase class-V AV941_13650 PF01458 Uncharacterized protein family (UPF0051) AV941_13655 PF00005 ABC transporter AV941_13660 PF01458 Uncharacterized protein family (UPF0051) AV941_13665 PF00266 Aminotransferase class-V AV941_13670 PF02082 Transcriptional regulator AV941_13675 PF00743 Flavin-binding monooxygenase-like AV941_13680 PF00132 Bacterial transferase hexapeptide (six repeats) AV941_13680 PF06426 Serine acetyltransferase, N-terminal AV941_13685 PF00588 SpoU rRNA Methylase family AV941_13690 PF00459 Inositol monophosphatase family AV941_13705 PF07549 SecD/SecF GG Motif AV941_13705 PF02355 Protein export membrane protein AV941_13710 PF02355 Protein export membrane protein AV941_13710 PF07549 SecD/SecF GG Motif AV941_13710 PF13721 SecD export protein N-terminal TM region AV941_13715 PF02699 Preprotein translocase subunit AV941_13720 PF01702 Queuine tRNA-ribosyltransferase AV941_13725 PF02547 Queuosine biosynthesis protein AV941_13740 PF04012 PspA/IM30 family AV941_13745 PF07885 Ion channel AV941_13760 PF06693 Protein of unknown function (DUF1190) AV941_13765 PF03738 Glutathionylspermidine synthase preATP-grasp AV941_13780 PF00005 ABC transporter AV941_13795 PF04960 Glutaminase AV941_13800 PF00245 Alkaline phosphatase AV941_13805 PF00072 Response regulator receiver domain AV941_13810 PF00463 Isocitrate lyase family AV941_13815 PF03466 LysR substrate binding domain AV941_13815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_13820 PF01274 Malate synthase AV941_13830 PF01370 NAD dependent epimerase/dehydratase family AV941_13855 PF17820 PDZ domain AV941_13855 PF13180 PDZ domain AV941_13875 PF13439 Glycosyltransferase Family 4 AV941_13875 PF00534 Glycosyl transferases group 1 AV941_13900 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AV941_13900 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AV941_13900 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AV941_13905 PF02350 UDP-N-acetylglucosamine 2-epimerase AV941_13935 PF01757 Acyltransferase family AV941_13940 PF00733 Asparagine synthase AV941_13940 PF13537 Glutamine amidotransferase domain AV941_13945 PF00862 Sucrose synthase AV941_13945 PF00534 Glycosyl transferases group 1 AV941_13955 PF01943 Polysaccharide biosynthesis protein AV941_13985 PF13537 Glutamine amidotransferase domain AV941_13985 PF00733 Asparagine synthase AV941_14000 PF01522 Polysaccharide deacetylase AV941_14005 PF02397 Bacterial sugar transferase AV941_14020 PF13614 AAA domain AV941_14030 PF13401 AAA domain AV941_14030 PF01471 Putative peptidoglycan binding domain AV941_14040 PF01541 GIY-YIG catalytic domain AV941_14050 PF03710 Glutamate-ammonia ligase adenylyltransferase AV941_14050 PF08335 GlnD PII-uridylyltransferase AV941_14080 PF03279 Bacterial lipid A biosynthesis acyltransferase AV941_14095 PF09317 Domain of unknown function (DUF1974) AV941_14095 PF02770 Acyl-CoA dehydrogenase, middle domain AV941_14095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV941_14095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV941_14100 PF07715 TonB-dependent Receptor Plug Domain AV941_14100 PF04886 PT repeat AV941_14100 PF00593 TonB dependent receptor AV941_14110 PF03707 Bacterial signalling protein N terminal repeat AV941_14110 PF00990 Diguanylate cyclase, GGDEF domain AV941_14110 PF00563 EAL domain AV941_14110 PF13188 PAS domain AV941_14115 PF00265 Thymidine kinase AV941_14125 PF00356 Bacterial regulatory proteins, lacI family AV941_14160 PF01926 50S ribosome-binding GTPase AV941_14165 PF00588 SpoU rRNA Methylase family AV941_14165 PF08032 RNA 2'-O ribose methyltransferase substrate binding AV941_14170 PF00378 Enoyl-CoA hydratase/isomerase AV941_14170 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AV941_14170 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AV941_14185 PF00171 Aldehyde dehydrogenase family AV941_14190 PF05199 GMC oxidoreductase AV941_14190 PF00732 GMC oxidoreductase AV941_14205 PF05971 RNA methyltransferase AV941_14230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV941_14230 PF02770 Acyl-CoA dehydrogenase, middle domain AV941_14230 PF18158 Adaptive response protein AidB N-terminal domain AV941_14260 PF00072 Response regulator receiver domain AV941_14260 PF00486 Transcriptional regulatory protein, C terminal AV941_14265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_14265 PF00672 HAMP domain AV941_14265 PF00512 His Kinase A (phospho-acceptor) domain AV941_14265 PF16527 Two-component sensor protein CpxA, periplasmic domain AV941_14275 PF03965 Penicillinase repressor AV941_14280 PF03544 Gram-negative bacterial TonB protein C-terminal AV941_14295 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AV941_14305 PF01799 [2Fe-2S] binding domain AV941_14305 PF00111 2Fe-2S iron-sulfur cluster binding domain AV941_14310 PF00941 FAD binding domain in molybdopterin dehydrogenase AV941_14310 PF03450 CO dehydrogenase flavoprotein C-terminal domain AV941_14315 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AV941_14315 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV941_14340 PF00106 short chain dehydrogenase AV941_14345 PF01965 DJ-1/PfpI family AV941_14350 PF03631 Virulence factor BrkB AV941_14360 PF07152 YaeQ protein AV941_14390 PF07690 Major Facilitator Superfamily AV941_14405 PF00270 DEAD/DEAH box helicase AV941_14405 PF16124 RecQ zinc-binding AV941_14405 PF00570 HRDC domain AV941_14405 PF09382 RQC domain AV941_14405 PF00271 Helicase conserved C-terminal domain AV941_14425 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AV941_14425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_14425 PF01627 Hpt domain AV941_14425 PF00672 HAMP domain AV941_14425 PF00512 His Kinase A (phospho-acceptor) domain AV941_14425 PF00072 Response regulator receiver domain AV941_14435 PF08446 PAS fold AV941_14435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_14435 PF01590 GAF domain AV941_14435 PF00512 His Kinase A (phospho-acceptor) domain AV941_14435 PF00360 Phytochrome region AV941_14440 PF07995 Glucose / Sorbosone dehydrogenase AV941_14445 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AV941_14455 PF00072 Response regulator receiver domain AV941_14455 PF00486 Transcriptional regulatory protein, C terminal AV941_14460 PF00512 His Kinase A (phospho-acceptor) domain AV941_14460 PF11808 Phosphate regulon sensor protein PhoR AV941_14460 PF00989 PAS fold AV941_14460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_14475 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AV941_14475 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AV941_14480 PF01272 Transcription elongation factor, GreA/GreB, C-term AV941_14480 PF14760 Rnk N-terminus AV941_14490 PF02599 Global regulator protein family AV941_14495 PF01145 SPFH domain / Band 7 family AV941_14515 PF07724 AAA domain (Cdc48 subfamily) AV941_14515 PF10431 C-terminal, D2-small domain, of ClpB protein AV941_14540 PF00403 Heavy-metal-associated domain AV941_14540 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV941_14540 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AV941_14545 PF00403 Heavy-metal-associated domain AV941_14555 PF13411 MerR HTH family regulatory protein AV941_14585 PF07660 Secretin and TonB N terminus short domain AV941_14585 PF07715 TonB-dependent Receptor Plug Domain AV941_14585 PF00593 TonB dependent receptor AV941_14600 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AV941_14605 PF16916 Dimerisation domain of Zinc Transporter AV941_14605 PF01545 Cation efflux family AV941_14610 PF00873 AcrB/AcrD/AcrF family AV941_14615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV941_14630 PF00873 AcrB/AcrD/AcrF family AV941_14650 PF16916 Dimerisation domain of Zinc Transporter AV941_14650 PF01545 Cation efflux family AV941_14665 PF01568 Molydopterin dinucleotide binding domain AV941_14665 PF00384 Molybdopterin oxidoreductase AV941_14670 PF03050 Transposase IS66 family AV941_14670 PF13005 zinc-finger binding domain of transposase IS66 AV941_14670 PF13007 Transposase C of IS166 homeodomain AV941_14670 PF13817 IS66 C-terminal element AV941_14685 PF00175 Oxidoreductase NAD-binding domain AV941_14685 PF00970 Oxidoreductase FAD-binding domain AV941_14685 PF00042 Globin AV941_14690 PF00158 Sigma-54 interaction domain AV941_14690 PF01590 GAF domain AV941_14710 PF01597 Glycine cleavage H-protein AV941_14715 PF08669 Glycine cleavage T-protein C-terminal barrel domain AV941_14715 PF01571 Aminomethyltransferase folate-binding domain AV941_14720 PF01979 Amidohydrolase family AV941_14725 PF01869 BadF/BadG/BcrA/BcrD ATPase family AV941_14730 PF03466 LysR substrate binding domain AV941_14730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_14735 PF02652 L-lactate permease AV941_14745 PF00557 Metallopeptidase family M24 AV941_14745 PF01321 Creatinase/Prolidase N-terminal domain AV941_14755 PF01494 FAD binding domain AV941_14760 PF01494 FAD binding domain AV941_14765 PF05195 Aminopeptidase P, N-terminal domain AV941_14765 PF00557 Metallopeptidase family M24 AV941_14770 PF03695 Uncharacterised protein family (UPF0149) AV941_14780 PF00294 pfkB family carbohydrate kinase AV941_14785 PF01156 Inosine-uridine preferring nucleoside hydrolase AV941_14790 PF00512 His Kinase A (phospho-acceptor) domain AV941_14790 PF01627 Hpt domain AV941_14790 PF00072 Response regulator receiver domain AV941_14790 PF00989 PAS fold AV941_14790 PF00497 Bacterial extracellular solute-binding proteins, family 3 AV941_14790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_14795 PF01812 5-formyltetrahydrofolate cyclo-ligase family AV941_14800 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AV941_14805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AV941_14805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AV941_14805 PF01842 ACT domain AV941_14825 PF06945 Protein of unknown function (DUF1289) AV941_14835 PF00873 AcrB/AcrD/AcrF family AV941_14840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV941_14845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_14845 PF03466 LysR substrate binding domain AV941_14860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AV941_14860 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV941_14865 PF02817 e3 binding domain AV941_14865 PF00364 Biotin-requiring enzyme AV941_14865 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AV941_14870 PF17831 Pyruvate dehydrogenase E1 component middle domain AV941_14870 PF00456 Transketolase, thiamine diphosphate binding domain AV941_14875 PF00392 Bacterial regulatory proteins, gntR family AV941_14875 PF07729 FCD domain AV941_14885 PF01510 N-acetylmuramoyl-L-alanine amidase AV941_14895 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AV941_14895 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AV941_14905 PF00482 Type II secretion system (T2SS), protein F AV941_14910 PF01478 Type IV leader peptidase family AV941_14910 PF06750 Bacterial Peptidase A24 N-terminal domain AV941_14915 PF01121 Dephospho-CoA kinase AV941_14920 PF07072 Cell division protein AV941_14930 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AV941_14935 PF00293 NUDIX domain AV941_14940 PF07516 SecA Wing and Scaffold domain AV941_14940 PF01043 SecA preprotein cross-linking domain AV941_14940 PF07517 SecA DEAD-like domain AV941_14940 PF02810 SEC-C motif AV941_14945 PF01476 LysM domain AV941_14945 PF08525 Opacity-associated protein A N-terminal motif AV941_14945 PF01551 Peptidase family M23 AV941_14950 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AV941_14955 PF00091 Tubulin/FtsZ family, GTPase domain AV941_14955 PF12327 FtsZ family, C-terminal domain AV941_14960 PF02491 SHS2 domain inserted in FTSA AV941_14965 PF08478 POTRA domain, FtsQ-type AV941_14965 PF03799 Cell division protein FtsQ AV941_14970 PF01820 D-ala D-ala ligase N-terminus AV941_14970 PF07478 D-ala D-ala ligase C-terminus AV941_14975 PF08245 Mur ligase middle domain AV941_14975 PF02875 Mur ligase family, glutamate ligase domain AV941_14975 PF01225 Mur ligase family, catalytic domain AV941_14980 PF03033 Glycosyltransferase family 28 N-terminal domain AV941_14980 PF04101 Glycosyltransferase family 28 C-terminal domain AV941_14985 PF01098 Cell cycle protein AV941_14990 PF02875 Mur ligase family, glutamate ligase domain AV941_14990 PF08245 Mur ligase middle domain AV941_14995 PF00953 Glycosyl transferase family 4 AV941_14995 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AV941_15000 PF01225 Mur ligase family, catalytic domain AV941_15000 PF08245 Mur ligase middle domain AV941_15000 PF02875 Mur ligase family, glutamate ligase domain AV941_15005 PF08245 Mur ligase middle domain AV941_15005 PF01225 Mur ligase family, catalytic domain AV941_15005 PF02875 Mur ligase family, glutamate ligase domain AV941_15010 PF00905 Penicillin binding protein transpeptidase domain AV941_15010 PF03717 Penicillin-binding Protein dimerisation domain AV941_15015 PF04999 Cell division protein FtsL AV941_15020 PF01795 MraW methylase family AV941_15025 PF02381 MraZ protein, putative antitoxin-like AV941_15065 PF00462 Glutaredoxin AV941_15065 PF08534 Redoxin AV941_15070 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AV941_15080 PF00990 Diguanylate cyclase, GGDEF domain AV941_15080 PF17158 Membrane-associated sensor, integral membrane domain AV941_15090 PF00158 Sigma-54 interaction domain AV941_15090 PF00072 Response regulator receiver domain AV941_15090 PF02954 Bacterial regulatory protein, Fis family AV941_15095 PF09456 RcsC Alpha-Beta-Loop (ABL) AV941_15095 PF00512 His Kinase A (phospho-acceptor) domain AV941_15095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_15095 PF00072 Response regulator receiver domain AV941_15100 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AV941_15100 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AV941_15120 PF00924 Mechanosensitive ion channel AV941_15120 PF05552 Conserved TM helix AV941_15125 PF04452 RNA methyltransferase AV941_15130 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AV941_15130 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AV941_15135 PF02622 Uncharacterized ACR, COG1678 AV941_15140 PF03652 Holliday junction resolvase AV941_15150 PF00437 Type II/IV secretion system protein AV941_15155 PF00437 Type II/IV secretion system protein AV941_15160 PF01168 Alanine racemase, N-terminal domain AV941_15165 PF03807 NADP oxidoreductase coenzyme F420-dependent AV941_15165 PF14748 Pyrroline-5-carboxylate reductase dimerisation AV941_15170 PF02325 YGGT family AV941_15180 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV941_15180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AV941_15195 PF02798 Glutathione S-transferase, N-terminal domain AV941_15195 PF14834 Glutathione S-transferase, C-terminal domain AV941_15200 PF00080 Copper/zinc superoxide dismutase (SODC) AV941_15205 PF02566 OsmC-like protein AV941_15210 PF01625 Peptide methionine sulfoxide reductase AV941_15225 PF03591 AzlC protein AV941_15235 PF07690 Major Facilitator Superfamily AV941_15240 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AV941_15245 PF03883 Peroxide stress protein YaaA AV941_15255 PF00923 Transaldolase/Fructose-6-phosphate aldolase AV941_15260 PF00342 Phosphoglucose isomerase AV941_15265 PF03167 Uracil DNA glycosylase superfamily AV941_15270 PF14821 Threonine synthase N terminus AV941_15270 PF00291 Pyridoxal-phosphate dependent enzyme AV941_15275 PF00288 GHMP kinases N terminal domain AV941_15275 PF08544 GHMP kinases C terminal AV941_15280 PF03447 Homoserine dehydrogenase, NAD binding domain AV941_15280 PF00742 Homoserine dehydrogenase AV941_15280 PF13840 ACT domain AV941_15280 PF01842 ACT domain AV941_15280 PF00696 Amino acid kinase family AV941_15285 PF17755 UvrA DNA-binding domain AV941_15290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_15290 PF03466 LysR substrate binding domain AV941_15295 PF08240 Alcohol dehydrogenase GroES-like domain AV941_15295 PF00107 Zinc-binding dehydrogenase AV941_15305 PF01022 Bacterial regulatory protein, arsR family AV941_15315 PF03358 NADPH-dependent FMN reductase AV941_15320 PF01758 Sodium Bile acid symporter family AV941_15325 PF00072 Response regulator receiver domain AV941_15325 PF01339 CheB methylesterase AV941_15330 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AV941_15335 PF00072 Response regulator receiver domain AV941_15335 PF00486 Transcriptional regulatory protein, C terminal AV941_15340 PF00672 HAMP domain AV941_15340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_15340 PF00512 His Kinase A (phospho-acceptor) domain AV941_15365 PF00962 Adenosine/AMP deaminase AV941_15370 PF04116 Fatty acid hydroxylase superfamily AV941_15390 PF03435 Saccharopine dehydrogenase NADP binding domain AV941_15390 PF16653 Saccharopine dehydrogenase C-terminal domain AV941_15395 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AV941_15405 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AV941_15410 PF04348 LppC putative lipoprotein AV941_15415 PF02021 Uncharacterised protein family UPF0102 AV941_15420 PF00534 Glycosyl transferases group 1 AV941_15425 PF13580 SIS domain AV941_15430 PF04972 BON domain AV941_15435 PF07690 Major Facilitator Superfamily AV941_15445 PF00893 Small Multidrug Resistance protein AV941_15450 PF07730 Histidine kinase AV941_15455 PF00072 Response regulator receiver domain AV941_15455 PF00196 Bacterial regulatory proteins, luxR family AV941_15470 PF07715 TonB-dependent Receptor Plug Domain AV941_15470 PF00593 TonB dependent receptor AV941_15485 PF00285 Citrate synthase, C-terminal domain AV941_15490 PF00330 Aconitase family (aconitate hydratase) AV941_15490 PF00694 Aconitase C-terminal domain AV941_15495 PF04303 PrpF protein AV941_15500 PF00990 Diguanylate cyclase, GGDEF domain AV941_15505 PF00480 ROK family AV941_15510 PF05161 MOFRL family AV941_15510 PF13660 Domain of unknown function (DUF4147) AV941_15515 PF00474 Sodium:solute symporter family AV941_15520 PF00593 TonB dependent receptor AV941_15520 PF07715 TonB-dependent Receptor Plug Domain AV941_15545 PF00072 Response regulator receiver domain AV941_15545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_15545 PF01627 Hpt domain AV941_15545 PF18415 Histidine kinase receptor ArcB trans-membrane domain AV941_15545 PF00512 His Kinase A (phospho-acceptor) domain AV941_15545 PF00989 PAS fold AV941_15550 PF01510 N-acetylmuramoyl-L-alanine amidase AV941_15555 PF00310 Glutamine amidotransferases class-II AV941_15555 PF01493 GXGXG motif AV941_15555 PF04898 Glutamate synthase central domain AV941_15555 PF01645 Conserved region in glutamate synthase AV941_15560 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AV941_15560 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV941_15575 PF01048 Phosphorylase superfamily AV941_15580 PF03186 CobD/Cbib protein AV941_15585 PF01497 Periplasmic binding protein AV941_15590 PF00581 Rhodanese-like domain AV941_15605 PF01266 FAD dependent oxidoreductase AV941_15610 PF00579 tRNA synthetases class I (W and Y) AV941_15620 PF01551 Peptidase family M23 AV941_15620 PF01476 LysM domain AV941_15625 PF03702 Anhydro-N-acetylmuramic acid kinase AV941_15630 PF07690 Major Facilitator Superfamily AV941_15640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AV941_15650 PF01053 Cys/Met metabolism PLP-dependent enzyme AV941_15655 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AV941_15655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AV941_15660 PF02798 Glutathione S-transferase, N-terminal domain AV941_15660 PF00043 Glutathione S-transferase, C-terminal domain AV941_15665 PF01521 Iron-sulphur cluster biosynthesis AV941_15675 PF03976 Polyphosphate kinase 2 (PPK2) AV941_15680 PF03776 Septum formation topological specificity factor MinE AV941_15685 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AV941_15690 PF03775 Septum formation inhibitor MinC, C-terminal domain AV941_15690 PF05209 Septum formation inhibitor MinC, N-terminal domain AV941_15695 PF00206 Lyase AV941_15695 PF10415 Fumarase C C-terminus AV941_15700 PF00127 Copper binding proteins, plastocyanin/azurin family AV941_15730 PF01566 Natural resistance-associated macrophage protein AV941_15735 PF00155 Aminotransferase class I and II AV941_15740 PF00072 Response regulator receiver domain AV941_15740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_15740 PF08448 PAS fold AV941_15740 PF00512 His Kinase A (phospho-acceptor) domain AV941_15740 PF13188 PAS domain AV941_15750 PF03951 Glutamine synthetase, beta-Grasp domain AV941_15750 PF00120 Glutamine synthetase, catalytic domain AV941_15760 PF00512 His Kinase A (phospho-acceptor) domain AV941_15760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_15760 PF00989 PAS fold AV941_15765 PF00158 Sigma-54 interaction domain AV941_15765 PF00072 Response regulator receiver domain AV941_15765 PF02954 Bacterial regulatory protein, Fis family AV941_15770 PF00072 Response regulator receiver domain AV941_15775 PF01553 Acyltransferase AV941_15780 PF06877 Regulator of ribonuclease activity B AV941_15795 PF08447 PAS fold AV941_15795 PF13426 PAS domain AV941_15795 PF07536 HWE histidine kinase AV941_15815 PF00512 His Kinase A (phospho-acceptor) domain AV941_15815 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AV941_15815 PF00072 Response regulator receiver domain AV941_15815 PF01627 Hpt domain AV941_15815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_15815 PF00672 HAMP domain AV941_15820 PF10458 Valyl tRNA synthetase tRNA binding arm AV941_15820 PF00133 tRNA synthetases class I (I, L, M and V) AV941_15820 PF08264 Anticodon-binding domain of tRNA AV941_15825 PF04364 DNA polymerase III chi subunit, HolC AV941_15830 PF02789 Cytosol aminopeptidase family, N-terminal domain AV941_15830 PF00883 Cytosol aminopeptidase family, catalytic domain AV941_15835 PF03739 Lipopolysaccharide export system permease LptF/LptG AV941_15840 PF03739 Lipopolysaccharide export system permease LptF/LptG AV941_15855 PF04545 Sigma-70, region 4 AV941_15855 PF04542 Sigma-70 region 2 AV941_15905 PF01131 DNA topoisomerase AV941_15905 PF01751 Toprim domain AV941_15905 PF01396 Topoisomerase DNA binding C4 zinc finger AV941_15935 PF00589 Phage integrase family AV941_15935 PF02899 Phage integrase, N-terminal SAM-like domain AV941_15950 PF06114 IrrE N-terminal-like domain AV941_16030 PF07729 FCD domain AV941_16030 PF00392 Bacterial regulatory proteins, gntR family AV941_16040 PF00703 Glycosyl hydrolases family 2 AV941_16040 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AV941_16040 PF16355 Domain of unknown function (DUF4982) AV941_16040 PF02837 Glycosyl hydrolases family 2, sugar binding domain AV941_16040 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AV941_16050 PF13378 Enolase C-terminal domain-like AV941_16050 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AV941_16055 PF07488 Glycosyl hydrolase family 67 middle domain AV941_16055 PF07477 Glycosyl hydrolase family 67 C-terminus AV941_16055 PF03648 Glycosyl hydrolase family 67 N-terminus AV941_16060 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AV941_16060 PF04616 Glycosyl hydrolases family 43 AV941_16070 PF13185 GAF domain AV941_16070 PF00990 Diguanylate cyclase, GGDEF domain AV941_16100 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AV941_16100 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AV941_16105 PF00486 Transcriptional regulatory protein, C terminal AV941_16105 PF00072 Response regulator receiver domain AV941_16110 PF01594 AI-2E family transporter AV941_16125 PF00005 ABC transporter AV941_16130 PF01032 FecCD transport family AV941_16135 PF01497 Periplasmic binding protein AV941_16145 PF07715 TonB-dependent Receptor Plug Domain AV941_16145 PF00593 TonB dependent receptor AV941_16155 PF00230 Major intrinsic protein AV941_16160 PF00892 EamA-like transporter family AV941_16175 PF07715 TonB-dependent Receptor Plug Domain AV941_16175 PF00593 TonB dependent receptor AV941_16185 PF02659 Putative manganese efflux pump AV941_16195 PF00753 Metallo-beta-lactamase superfamily AV941_16195 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AV941_16195 PF10996 Beta-Casp domain AV941_16200 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AV941_16205 PF00557 Metallopeptidase family M24 AV941_16205 PF01321 Creatinase/Prolidase N-terminal domain AV941_16210 PF05221 S-adenosyl-L-homocysteine hydrolase AV941_16210 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AV941_16220 PF03547 Membrane transport protein AV941_16225 PF13360 PQQ-like domain AV941_16225 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AV941_16250 PF00005 ABC transporter AV941_16260 PF00883 Cytosol aminopeptidase family, catalytic domain AV941_16260 PF02789 Cytosol aminopeptidase family, N-terminal domain AV941_16265 PF12706 Beta-lactamase superfamily domain AV941_16270 PF03070 TENA/THI-4/PQQC family AV941_16275 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AV941_16280 PF04055 Radical SAM superfamily AV941_16280 PF13186 Iron-sulfur cluster-binding domain AV941_16305 PF00196 Bacterial regulatory proteins, luxR family AV941_16305 PF00072 Response regulator receiver domain AV941_16310 PF00512 His Kinase A (phospho-acceptor) domain AV941_16310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_16320 PF12801 4Fe-4S binding domain AV941_16320 PF04205 FMN-binding domain AV941_16325 PF00171 Aldehyde dehydrogenase family AV941_16330 PF00072 Response regulator receiver domain AV941_16330 PF00196 Bacterial regulatory proteins, luxR family AV941_16335 PF05231 MASE1 AV941_16335 PF07730 Histidine kinase AV941_16335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_16340 PF03466 LysR substrate binding domain AV941_16340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_16345 PF00171 Aldehyde dehydrogenase family AV941_16350 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AV941_16350 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AV941_16355 PF02028 BCCT, betaine/carnitine/choline family transporter AV941_16370 PF00593 TonB dependent receptor AV941_16370 PF07715 TonB-dependent Receptor Plug Domain AV941_16375 PF00149 Calcineurin-like phosphoesterase AV941_16375 PF16656 Purple acid Phosphatase, N-terminal domain AV941_16380 PF03466 LysR substrate binding domain AV941_16380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_16385 PF01070 FMN-dependent dehydrogenase AV941_16390 PF09330 D-lactate dehydrogenase, membrane binding AV941_16390 PF01565 FAD binding domain AV941_16395 PF00196 Bacterial regulatory proteins, luxR family AV941_16400 PF03783 Curli production assembly/transport component CsgG AV941_16425 PF00082 Subtilase family AV941_16430 PF00196 Bacterial regulatory proteins, luxR family AV941_16430 PF00072 Response regulator receiver domain AV941_16445 PF00270 DEAD/DEAH box helicase AV941_16445 PF00271 Helicase conserved C-terminal domain AV941_16475 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AV941_16490 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV941_16490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AV941_16505 PF00115 Cytochrome C and Quinol oxidase polypeptide I AV941_16530 PF00990 Diguanylate cyclase, GGDEF domain AV941_16540 PF00462 Glutaredoxin AV941_16550 PF00067 Cytochrome P450 AV941_16560 PF00871 Acetokinase family AV941_16580 PF01654 Cytochrome bd terminal oxidase subunit I AV941_16585 PF02322 Cytochrome bd terminal oxidase subunit II AV941_16590 PF00294 pfkB family carbohydrate kinase AV941_16600 PF00392 Bacterial regulatory proteins, gntR family AV941_16600 PF07729 FCD domain AV941_16605 PF12794 Mechanosensitive ion channel inner membrane domain 1 AV941_16605 PF00924 Mechanosensitive ion channel AV941_16605 PF12795 Mechanosensitive ion channel porin domain AV941_16615 PF00141 Peroxidase AV941_16635 PF03466 LysR substrate binding domain AV941_16635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_16645 PF01925 Sulfite exporter TauE/SafE AV941_16655 PF00072 Response regulator receiver domain AV941_16655 PF08769 Sporulation initiation factor Spo0A C terminal AV941_16665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_16665 PF00512 His Kinase A (phospho-acceptor) domain AV941_16675 PF00136 DNA polymerase family B AV941_16675 PF03104 DNA polymerase family B, exonuclease domain AV941_16685 PF00501 AMP-binding enzyme AV941_16685 PF13193 AMP-binding enzyme C-terminal domain AV941_16720 PF05958 tRNA (Uracil-5-)-methyltransferase AV941_16725 PF00440 Bacterial regulatory proteins, tetR family AV941_16735 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV941_16735 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AV941_16745 PF03167 Uracil DNA glycosylase superfamily AV941_16750 PF00563 EAL domain AV941_16750 PF00990 Diguanylate cyclase, GGDEF domain AV941_16750 PF03707 Bacterial signalling protein N terminal repeat AV941_16760 PF01507 Phosphoadenosine phosphosulfate reductase family AV941_16765 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AV941_16765 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AV941_16770 PF00175 Oxidoreductase NAD-binding domain AV941_16770 PF00258 Flavodoxin AV941_16770 PF00667 FAD binding domain AV941_16790 PF04024 PspC domain AV941_16795 PF04012 PspA/IM30 family AV941_16805 PF01207 Dihydrouridine synthase (Dus) AV941_16825 PF01389 OmpA-like transmembrane domain AV941_16825 PF00691 OmpA family AV941_16830 PF00004 ATPase family associated with various cellular activities (AAA) AV941_16830 PF05362 Lon protease (S16) C-terminal proteolytic domain AV941_16830 PF02190 ATP-dependent protease La (LON) substrate-binding domain AV941_16835 PF00990 Diguanylate cyclase, GGDEF domain AV941_16835 PF00563 EAL domain AV941_16835 PF03707 Bacterial signalling protein N terminal repeat AV941_16840 PF00756 Putative esterase AV941_16845 PF01553 Acyltransferase AV941_16850 PF01553 Acyltransferase AV941_16855 PF00924 Mechanosensitive ion channel AV941_16870 PF01370 NAD dependent epimerase/dehydratase family AV941_16875 PF00209 Sodium:neurotransmitter symporter family AV941_16880 PF00106 short chain dehydrogenase AV941_16890 PF01625 Peptide methionine sulfoxide reductase AV941_16905 PF00258 Flavodoxin AV941_16915 PF02472 Biopolymer transport protein ExbD/TolR AV941_16930 PF13181 Tetratricopeptide repeat AV941_16930 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AV941_16935 PF01270 Glycosyl hydrolases family 8 AV941_16945 PF00535 Glycosyl transferase family 2 AV941_16945 PF03552 Cellulose synthase AV941_16945 PF07238 PilZ domain AV941_16960 PF05175 Methyltransferase small domain AV941_16965 PF13460 NAD(P)H-binding AV941_16970 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AV941_16970 PF00326 Prolyl oligopeptidase family AV941_16975 PF08000 Bacterial PH domain AV941_16980 PF08448 PAS fold AV941_16980 PF00990 Diguanylate cyclase, GGDEF domain AV941_16980 PF00563 EAL domain AV941_16990 PF00291 Pyridoxal-phosphate dependent enzyme AV941_16995 PF07969 Amidohydrolase family AV941_17005 PF00753 Metallo-beta-lactamase superfamily AV941_17015 PF03466 LysR substrate binding domain AV941_17015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_17020 PF13230 Glutamine amidotransferases class-II AV941_17025 PF05360 yiaA/B two helix domain AV941_17045 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AV941_17050 PF00593 TonB dependent receptor AV941_17050 PF07715 TonB-dependent Receptor Plug Domain AV941_17055 PF00171 Aldehyde dehydrogenase family AV941_17060 PF01613 Flavin reductase like domain AV941_17065 PF00881 Nitroreductase family AV941_17070 PF00561 alpha/beta hydrolase fold AV941_17075 PF01042 Endoribonuclease L-PSP AV941_17080 PF00857 Isochorismatase family AV941_17085 PF00296 Luciferase-like monooxygenase AV941_17090 PF00440 Bacterial regulatory proteins, tetR family AV941_17090 PF08362 YcdC-like protein, C-terminal region AV941_17105 PF09905 DNA-binding protein VF530 AV941_17110 PF16123 Hydroxyacylglutathione hydrolase C-terminus AV941_17110 PF00753 Metallo-beta-lactamase superfamily AV941_17120 PF00817 impB/mucB/samB family AV941_17120 PF11799 impB/mucB/samB family C-terminal domain AV941_17120 PF11798 IMS family HHH motif AV941_17130 PF02424 ApbE family AV941_17135 PF00175 Oxidoreductase NAD-binding domain AV941_17135 PF00111 2Fe-2S iron-sulfur cluster binding domain AV941_17135 PF00970 Oxidoreductase FAD-binding domain AV941_17140 PF02508 Rnf-Nqr subunit, membrane protein AV941_17145 PF02508 Rnf-Nqr subunit, membrane protein AV941_17150 PF04205 FMN-binding domain AV941_17155 PF03116 NQR2, RnfD, RnfE family AV941_17160 PF11973 NQRA C-terminal domain AV941_17160 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AV941_17165 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AV941_17165 PF12241 Trans-2-enoyl-CoA reductase catalytic region AV941_17165 PF07055 Enoyl reductase FAD binding domain AV941_17170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AV941_17170 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AV941_17175 PF00311 Phosphoenolpyruvate carboxylase AV941_17180 PF00141 Peroxidase AV941_17185 PF00141 Peroxidase AV941_17195 PF00056 lactate/malate dehydrogenase, NAD binding domain AV941_17195 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AV941_17200 PF02863 Arginine repressor, C-terminal domain AV941_17200 PF01316 Arginine repressor, DNA binding domain AV941_17225 PF00485 Phosphoribulokinase / Uridine kinase family AV941_17230 PF07670 Nucleoside recognition AV941_17230 PF01773 Na+ dependent nucleoside transporter N-terminus AV941_17230 PF07662 Na+ dependent nucleoside transporter C-terminus AV941_17250 PF00072 Response regulator receiver domain AV941_17250 PF00990 Diguanylate cyclase, GGDEF domain AV941_17255 PF07733 Bacterial DNA polymerase III alpha NTPase domain AV941_17255 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AV941_17255 PF14579 Helix-hairpin-helix motif AV941_17255 PF02811 PHP domain AV941_17255 PF00929 Exonuclease AV941_17260 PF00571 CBS domain AV941_17260 PF00005 ABC transporter AV941_17265 PF00474 Sodium:solute symporter family AV941_17275 PF07689 KaiB domain AV941_17275 PF00512 His Kinase A (phospho-acceptor) domain AV941_17275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_17285 PF08443 RimK-like ATP-grasp domain AV941_17285 PF18030 RimK PreATP-grasp domain AV941_17295 PF08443 RimK-like ATP-grasp domain AV941_17295 PF18030 RimK PreATP-grasp domain AV941_17305 PF00196 Bacterial regulatory proteins, luxR family AV941_17305 PF00072 Response regulator receiver domain AV941_17320 PF02690 Na+/Pi-cotransporter AV941_17325 PF00248 Aldo/keto reductase family AV941_17340 PF00990 Diguanylate cyclase, GGDEF domain AV941_17340 PF08447 PAS fold AV941_17340 PF08448 PAS fold AV941_17340 PF00563 EAL domain AV941_17345 PF00009 Elongation factor Tu GTP binding domain AV941_17345 PF03143 Elongation factor Tu C-terminal domain AV941_17345 PF03144 Elongation factor Tu domain 2 AV941_17370 PF03309 Type III pantothenate kinase AV941_17375 PF03099 Biotin/lipoate A/B protein ligase family AV941_17375 PF02237 Biotin protein ligase C terminal domain AV941_17375 PF08279 HTH domain AV941_17380 PF01565 FAD binding domain AV941_17380 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AV941_17385 PF13426 PAS domain AV941_17385 PF08447 PAS fold AV941_17385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV941_17420 PF03412 Peptidase C39 family AV941_17420 PF00664 ABC transporter transmembrane region AV941_17420 PF00005 ABC transporter AV941_17425 PF03466 LysR substrate binding domain AV941_17425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_17440 PF00483 Nucleotidyl transferase AV941_17440 PF01050 Mannose-6-phosphate isomerase AV941_17445 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AV941_17445 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AV941_17445 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AV941_17450 PF00535 Glycosyl transferase family 2 AV941_17455 PF16363 GDP-mannose 4,6 dehydratase AV941_17460 PF04321 RmlD substrate binding domain AV941_17465 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AV941_17470 PF00483 Nucleotidyl transferase AV941_17490 PF13181 Tetratricopeptide repeat AV941_17525 PF00535 Glycosyl transferase family 2 AV941_17625 PF13005 zinc-finger binding domain of transposase IS66 AV941_17625 PF13007 Transposase C of IS166 homeodomain AV941_17625 PF13817 IS66 C-terminal element AV941_17625 PF03050 Transposase IS66 family AV941_17665 PF00700 Bacterial flagellin C-terminal helical region AV941_17665 PF00669 Bacterial flagellin N-terminal helical region AV941_17675 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AV941_17680 PF01196 Ribosomal protein L17 AV941_17685 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AV941_17685 PF01000 RNA polymerase Rpb3/RpoA insert domain AV941_17685 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AV941_17690 PF00163 Ribosomal protein S4/S9 N-terminal domain AV941_17690 PF01479 S4 domain AV941_17695 PF00411 Ribosomal protein S11 AV941_17700 PF00416 Ribosomal protein S13/S18 AV941_17705 PF00444 Ribosomal protein L36 AV941_17710 PF00344 SecY translocase AV941_17715 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AV941_17720 PF00327 Ribosomal protein L30p/L7e AV941_17725 PF03719 Ribosomal protein S5, C-terminal domain AV941_17725 PF00333 Ribosomal protein S5, N-terminal domain AV941_17730 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AV941_17735 PF00347 Ribosomal protein L6 AV941_17740 PF00410 Ribosomal protein S8 AV941_17745 PF00253 Ribosomal protein S14p/S29e AV941_17750 PF00673 ribosomal L5P family C-terminus AV941_17750 PF00281 Ribosomal protein L5 AV941_17755 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AV941_17755 PF00467 KOW motif AV941_17760 PF00238 Ribosomal protein L14p/L23e AV941_17765 PF09308 LuxQ, periplasmic AV941_17765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_17765 PF00072 Response regulator receiver domain AV941_17765 PF00512 His Kinase A (phospho-acceptor) domain AV941_17785 PF00588 SpoU rRNA Methylase family AV941_17785 PF08032 RNA 2'-O ribose methyltransferase substrate binding AV941_17790 PF08461 Ribonuclease R winged-helix domain AV941_17790 PF17876 Cold shock domain AV941_17790 PF00575 S1 RNA binding domain AV941_17790 PF00773 RNB domain AV941_17790 PF08206 Ribonuclease B OB domain AV941_17805 PF09423 PhoD-like phosphatase AV941_17805 PF16655 PhoD-like phosphatase, N-terminal domain AV941_17835 PF08238 Sel1 repeat AV941_17845 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AV941_17850 PF00175 Oxidoreductase NAD-binding domain AV941_17850 PF00970 Oxidoreductase FAD-binding domain AV941_17865 PF04389 Peptidase family M28 AV941_17875 PF01590 GAF domain AV941_17875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_17875 PF00512 His Kinase A (phospho-acceptor) domain AV941_17875 PF08446 PAS fold AV941_17875 PF00360 Phytochrome region AV941_17885 PF01654 Cytochrome bd terminal oxidase subunit I AV941_17890 PF02322 Cytochrome bd terminal oxidase subunit II AV941_17895 PF13404 AsnC-type helix-turn-helix domain AV941_17895 PF01037 Lrp/AsnC ligand binding domain AV941_17905 PF00313 'Cold-shock' DNA-binding domain AV941_17910 PF03109 ABC1 family AV941_17920 PF01209 ubiE/COQ5 methyltransferase family AV941_17930 PF01432 Peptidase family M3 AV941_17935 PF00072 Response regulator receiver domain AV941_17945 PF00989 PAS fold AV941_17945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_17945 PF00512 His Kinase A (phospho-acceptor) domain AV941_17950 PF02954 Bacterial regulatory protein, Fis family AV941_17950 PF00158 Sigma-54 interaction domain AV941_17950 PF00072 Response regulator receiver domain AV941_17955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AV941_17955 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV941_17960 PF00384 Molybdopterin oxidoreductase AV941_17960 PF01568 Molydopterin dinucleotide binding domain AV941_17960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AV941_17965 PF07676 WD40-like Beta Propeller Repeat AV941_17965 PF00326 Prolyl oligopeptidase family AV941_18015 PF03412 Peptidase C39 family AV941_18015 PF00664 ABC transporter transmembrane region AV941_18015 PF00005 ABC transporter AV941_18020 PF00072 Response regulator receiver domain AV941_18020 PF00196 Bacterial regulatory proteins, luxR family AV941_18030 PF08443 RimK-like ATP-grasp domain AV941_18030 PF18030 RimK PreATP-grasp domain AV941_18040 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system AV941_18045 PF00004 ATPase family associated with various cellular activities (AAA) AV941_18045 PF07724 AAA domain (Cdc48 subfamily) AV941_18050 PF00227 Proteasome subunit AV941_18055 PF05036 Sporulation related domain AV941_18060 PF00270 DEAD/DEAH box helicase AV941_18060 PF17764 3′ DNA-binding domain (3′BD) AV941_18060 PF18074 Primosomal protein N C-terminal domain AV941_18060 PF00271 Helicase conserved C-terminal domain AV941_18060 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AV941_18065 PF01197 Ribosomal protein L31 AV941_18075 PF00390 Malic enzyme, N-terminal domain AV941_18075 PF03949 Malic enzyme, NAD binding domain AV941_18080 PF01340 Met Apo-repressor, MetJ AV941_18085 PF02219 Methylenetetrahydrofolate reductase AV941_18090 PF03631 Virulence factor BrkB AV941_18105 PF00561 alpha/beta hydrolase fold AV941_18110 PF02580 D-Tyr-tRNA(Tyr) deacylase AV941_18115 PF00583 Acetyltransferase (GNAT) family AV941_18115 PF09500 Putative thioesterase (yiiD_Cterm) AV941_18120 PF04545 Sigma-70, region 4 AV941_18120 PF04542 Sigma-70 region 2 AV941_18120 PF00140 Sigma-70 factor, region 1.2 AV941_18125 PF00563 EAL domain AV941_18125 PF08668 HDOD domain AV941_18130 PF00563 EAL domain AV941_18130 PF08668 HDOD domain AV941_18135 PF18075 FtsX extracellular domain AV941_18140 PF00005 ABC transporter AV941_18145 PF00448 SRP54-type protein, GTPase domain AV941_18145 PF02881 SRP54-type protein, helical bundle domain AV941_18160 PF01914 MarC family integral membrane protein AV941_18170 PF00883 Cytosol aminopeptidase family, catalytic domain AV941_18170 PF12404 Peptidase AV941_18175 PF03749 Sugar fermentation stimulation protein RE domain AV941_18175 PF17746 SfsA N-terminal OB domain AV941_18180 PF01258 Prokaryotic dksA/traR C4-type zinc finger AV941_18185 PF00749 tRNA synthetases class I (E and Q), catalytic domain AV941_18190 PF12626 Polymerase A arginine-rich C-terminus AV941_18190 PF12627 Probable RNA and SrmB- binding site of polymerase A AV941_18190 PF01743 Poly A polymerase head domain AV941_18195 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AV941_18200 PF02548 Ketopantoate hydroxymethyltransferase AV941_18205 PF02569 Pantoate-beta-alanine ligase AV941_18210 PF00282 Pyridoxal-dependent decarboxylase conserved domain AV941_18225 PF01061 ABC-2 type transporter AV941_18230 PF00005 ABC transporter AV941_18235 PF00486 Transcriptional regulatory protein, C terminal AV941_18235 PF00072 Response regulator receiver domain AV941_18240 PF00512 His Kinase A (phospho-acceptor) domain AV941_18240 PF00672 HAMP domain AV941_18240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_18245 PF07715 TonB-dependent Receptor Plug Domain AV941_18245 PF00593 TonB dependent receptor AV941_18250 PF18331 PKHD-type hydroxylase C-terminal domain AV941_18250 PF13640 2OG-Fe(II) oxygenase superfamily AV941_18265 PF00571 CBS domain AV941_18265 PF01595 Cyclin M transmembrane N-terminal domain AV941_18275 PF02554 Carbon starvation protein CstA AV941_18275 PF13722 5TM C-terminal transporter carbon starvation CstA AV941_18295 PF00009 Elongation factor Tu GTP binding domain AV941_18295 PF03143 Elongation factor Tu C-terminal domain AV941_18295 PF03144 Elongation factor Tu domain 2 AV941_18300 PF03144 Elongation factor Tu domain 2 AV941_18300 PF14492 Elongation Factor G, domain II AV941_18300 PF03764 Elongation factor G, domain IV AV941_18300 PF00009 Elongation factor Tu GTP binding domain AV941_18300 PF00679 Elongation factor G C-terminus AV941_18305 PF00177 Ribosomal protein S7p/S5e AV941_18310 PF00164 Ribosomal protein S12/S23 AV941_18315 PF04998 RNA polymerase Rpb1, domain 5 AV941_18315 PF04997 RNA polymerase Rpb1, domain 1 AV941_18315 PF00623 RNA polymerase Rpb1, domain 2 AV941_18315 PF05000 RNA polymerase Rpb1, domain 4 AV941_18315 PF04983 RNA polymerase Rpb1, domain 3 AV941_18320 PF00562 RNA polymerase Rpb2, domain 6 AV941_18320 PF04563 RNA polymerase beta subunit AV941_18320 PF04565 RNA polymerase Rpb2, domain 3 AV941_18320 PF10385 RNA polymerase beta subunit external 1 domain AV941_18320 PF04560 RNA polymerase Rpb2, domain 7 AV941_18320 PF04561 RNA polymerase Rpb2, domain 2 AV941_18325 PF16320 Ribosomal protein L7/L12 dimerisation domain AV941_18325 PF00542 Ribosomal protein L7/L12 C-terminal domain AV941_18330 PF00466 Ribosomal protein L10 AV941_18335 PF00687 Ribosomal protein L1p/L10e family AV941_18340 PF00298 Ribosomal protein L11, RNA binding domain AV941_18340 PF03946 Ribosomal protein L11, N-terminal domain AV941_18360 PF02357 Transcription termination factor nusG AV941_18360 PF00467 KOW motif AV941_18365 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AV941_18375 PF00005 ABC transporter AV941_18375 PF00664 ABC transporter transmembrane region AV941_18380 PF03737 Aldolase/RraA AV941_18385 PF01431 Peptidase family M13 AV941_18385 PF05649 Peptidase family M13 AV941_18395 PF03880 DbpA RNA binding domain AV941_18395 PF00270 DEAD/DEAH box helicase AV941_18395 PF00271 Helicase conserved C-terminal domain AV941_18400 PF01979 Amidohydrolase family AV941_18405 PF08212 Lipocalin-like domain AV941_18410 PF00248 Aldo/keto reductase family AV941_18415 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AV941_18420 PF05552 Conserved TM helix AV941_18420 PF00924 Mechanosensitive ion channel AV941_18425 PF07690 Major Facilitator Superfamily AV941_18430 PF00128 Alpha amylase, catalytic domain AV941_18440 PF01227 GTP cyclohydrolase I AV941_18450 PF04371 Porphyromonas-type peptidyl-arginine deiminase AV941_18455 PF00795 Carbon-nitrogen hydrolase AV941_18470 PF00270 DEAD/DEAH box helicase AV941_18470 PF08494 DEAD/H associated AV941_18470 PF00271 Helicase conserved C-terminal domain AV941_18480 PF04679 ATP dependent DNA ligase C terminal region AV941_18480 PF01068 ATP dependent DNA ligase domain AV941_18480 PF04675 DNA ligase N terminus AV941_18485 PF09285 Elongation factor P, C-terminal AV941_18485 PF08207 Elongation factor P (EF-P) KOW-like domain AV941_18485 PF01132 Elongation factor P (EF-P) OB domain AV941_18490 PF00294 pfkB family carbohydrate kinase AV941_18500 PF00809 Pterin binding enzyme AV941_18500 PF02310 B12 binding domain AV941_18500 PF02607 B12 binding domain AV941_18500 PF02965 Vitamin B12 dependent methionine synthase, activation domain AV941_18500 PF02574 Homocysteine S-methyltransferase AV941_18505 PF00043 Glutathione S-transferase, C-terminal domain AV941_18505 PF02798 Glutathione S-transferase, N-terminal domain AV941_18510 PF02798 Glutathione S-transferase, N-terminal domain AV941_18520 PF00561 alpha/beta hydrolase fold AV941_18535 PF00171 Aldehyde dehydrogenase family AV941_18540 PF00205 Thiamine pyrophosphate enzyme, central domain AV941_18540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AV941_18540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AV941_18550 PF00762 Ferrochelatase AV941_18555 PF03806 AbgT putative transporter family AV941_18560 PF01145 SPFH domain / Band 7 family AV941_18565 PF12221 Bacterial membrane protein N terminal AV941_18565 PF01145 SPFH domain / Band 7 family AV941_18570 PF01926 50S ribosome-binding GTPase AV941_18570 PF16360 GTP-binding GTPase Middle Region AV941_18570 PF13167 GTP-binding GTPase N-terminal AV941_18575 PF17209 Hfq protein AV941_18585 PF08676 MutL C terminal dimerisation domain AV941_18585 PF01119 DNA mismatch repair protein, C-terminal domain AV941_18590 PF01520 N-acetylmuramoyl-L-alanine amidase AV941_18595 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AV941_18600 PF03853 YjeF-related protein N-terminus AV941_18600 PF01256 Carbohydrate kinase AV941_18605 PF08331 Domain of unknown function (DUF1730) AV941_18615 PF01208 Uroporphyrinogen decarboxylase (URO-D) AV941_18620 PF00293 NUDIX domain AV941_18620 PF09297 NADH pyrophosphatase zinc ribbon domain AV941_18625 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AV941_18630 PF01475 Ferric uptake regulator family AV941_18640 PF01894 Uncharacterised protein family UPF0047 AV941_18645 PF05736 OprF membrane domain AV941_18645 PF00691 OmpA family AV941_18650 PF03796 DnaB-like helicase C terminal domain AV941_18650 PF00772 DnaB-like helicase N terminal domain AV941_18675 PF03475 3-alpha domain AV941_18675 PF03473 MOSC domain AV941_18690 PF01281 Ribosomal protein L9, N-terminal domain AV941_18690 PF03948 Ribosomal protein L9, C-terminal domain AV941_18695 PF01084 Ribosomal protein S18 AV941_18700 PF01250 Ribosomal protein S6 AV941_18705 PF00512 His Kinase A (phospho-acceptor) domain AV941_18705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_18705 PF07689 KaiB domain AV941_18715 PF00005 ABC transporter AV941_18715 PF12704 MacB-like periplasmic core domain AV941_18715 PF02687 FtsX-like permease family AV941_18725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV941_18725 PF08447 PAS fold AV941_18730 PF13188 PAS domain AV941_18730 PF00512 His Kinase A (phospho-acceptor) domain AV941_18730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_18730 PF13426 PAS domain AV941_18730 PF00989 PAS fold AV941_18735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV941_18735 PF02743 Cache domain AV941_18735 PF00672 HAMP domain AV941_18745 PF16916 Dimerisation domain of Zinc Transporter AV941_18745 PF01545 Cation efflux family AV941_18765 PF14310 Fibronectin type III-like domain AV941_18765 PF01915 Glycosyl hydrolase family 3 C-terminal domain AV941_18765 PF00933 Glycosyl hydrolase family 3 N terminal domain AV941_18770 PF07690 Major Facilitator Superfamily AV941_18775 PF00232 Glycosyl hydrolase family 1 AV941_18780 PF00356 Bacterial regulatory proteins, lacI family AV941_18785 PF00083 Sugar (and other) transporter AV941_18790 PF13474 SnoaL-like domain AV941_18800 PF17151 Periplasmic sensor domain AV941_18800 PF00990 Diguanylate cyclase, GGDEF domain AV941_18810 PF08021 Siderophore-interacting FAD-binding domain AV941_18810 PF04954 Siderophore-interacting protein AV941_18815 PF05532 CsbD-like AV941_18840 PF00472 RF-1 domain AV941_18845 PF00364 Biotin-requiring enzyme AV941_18845 PF00561 alpha/beta hydrolase fold AV941_18865 PF01292 Prokaryotic cytochrome b561 AV941_18870 PF04264 YceI-like domain AV941_18875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV941_18880 PF07715 TonB-dependent Receptor Plug Domain AV941_18880 PF00593 TonB dependent receptor AV941_18890 PF03466 LysR substrate binding domain AV941_18890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_18895 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AV941_18900 PF00107 Zinc-binding dehydrogenase AV941_18900 PF16884 N-terminal domain of oxidoreductase AV941_18905 PF00360 Phytochrome region AV941_18905 PF01590 GAF domain AV941_18905 PF00990 Diguanylate cyclase, GGDEF domain AV941_18905 PF00563 EAL domain AV941_18910 PF09308 LuxQ, periplasmic AV941_18910 PF00512 His Kinase A (phospho-acceptor) domain AV941_18910 PF00072 Response regulator receiver domain AV941_18910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_18920 PF00296 Luciferase-like monooxygenase AV941_18925 PF01380 SIS domain AV941_18930 PF00455 DeoR C terminal sensor domain AV941_18930 PF08220 DeoR-like helix-turn-helix domain AV941_18935 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AV941_18935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AV941_18940 PF14602 Hexapeptide repeat of succinyl-transferase AV941_18940 PF12804 MobA-like NTP transferase domain AV941_18940 PF00132 Bacterial transferase hexapeptide (six repeats) AV941_18950 PF00892 EamA-like transporter family AV941_18955 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AV941_18955 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AV941_18960 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain AV941_18960 PF00730 HhH-GPD superfamily base excision DNA repair protein AV941_18965 PF00144 Beta-lactamase AV941_18970 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AV941_18970 PF17810 Arginine decarboxylase helical bundle domain AV941_18970 PF17944 Arginine decarboxylase C-terminal helical extension AV941_18980 PF02233 NAD(P) transhydrogenase beta subunit AV941_18985 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AV941_18990 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AV941_18990 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AV941_19030 PF00593 TonB dependent receptor AV941_19030 PF07715 TonB-dependent Receptor Plug Domain AV941_19065 PF01040 UbiA prenyltransferase family AV941_19070 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AV941_19075 PF00510 Cytochrome c oxidase subunit III AV941_19080 PF00115 Cytochrome C and Quinol oxidase polypeptide I AV941_19085 PF06481 COX Aromatic Rich Motif AV941_19085 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AV941_19095 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AV941_19100 PF01850 PIN domain AV941_19120 PF00118 TCP-1/cpn60 chaperonin family AV941_19125 PF00166 Chaperonin 10 Kd subunit AV941_19130 PF04186 FxsA cytoplasmic membrane protein AV941_19135 PF03091 CutA1 divalent ion tolerance protein AV941_19140 PF02683 Cytochrome C biogenesis protein transmembrane region AV941_19140 PF11412 Disulphide bond corrector protein DsbC AV941_19145 PF01551 Peptidase family M23 AV941_19150 PF01220 Dehydroquinase class II AV941_19155 PF00364 Biotin-requiring enzyme AV941_19160 PF02785 Biotin carboxylase C-terminal domain AV941_19160 PF00289 Biotin carboxylase, N-terminal domain AV941_19160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AV941_19180 PF11490 DNA polymerase III polC-type N-terminus II AV941_19180 PF14579 Helix-hairpin-helix motif AV941_19180 PF02811 PHP domain AV941_19180 PF00929 Exonuclease AV941_19180 PF07733 Bacterial DNA polymerase III alpha NTPase domain AV941_19180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AV941_19200 PF01355 High potential iron-sulfur protein AV941_19205 PF01425 Amidase AV941_19220 PF01207 Dihydrouridine synthase (Dus) AV941_19225 PF02954 Bacterial regulatory protein, Fis family AV941_19230 PF01808 AICARFT/IMPCHase bienzyme AV941_19230 PF02142 MGS-like domain AV941_19240 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AV941_19240 PF02843 Phosphoribosylglycinamide synthetase, C domain AV941_19240 PF02844 Phosphoribosylglycinamide synthetase, N domain AV941_19255 PF00520 Ion transport protein AV941_19255 PF00027 Cyclic nucleotide-binding domain AV941_19260 PF00485 Phosphoribulokinase / Uridine kinase family AV941_19270 PF00072 Response regulator receiver domain AV941_19270 PF00486 Transcriptional regulatory protein, C terminal AV941_19275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV941_19275 PF00672 HAMP domain AV941_19275 PF00512 His Kinase A (phospho-acceptor) domain AV941_19285 PF01055 Glycosyl hydrolases family 31 AV941_19285 PF13802 Galactose mutarotase-like AV941_19285 PF16338 Domain of unknown function (DUF4968) AV941_19285 PF17137 Domain of unknown function (DUF5110) AV941_19295 PF01430 Hsp33 protein AV941_19300 PF01479 S4 domain AV941_19305 PF11356 Type II secretion system protein C AV941_19310 PF03958 Bacterial type II/III secretion system short domain AV941_19310 PF00263 Bacterial type II and III secretion system protein AV941_19315 PF00437 Type II/IV secretion system protein AV941_19320 PF00482 Type II secretion system (T2SS), protein F AV941_19325 PF08334 Type II secretion system (T2SS), protein G AV941_19325 PF07963 Prokaryotic N-terminal methylation motif AV941_19330 PF12019 Type II transport protein GspH AV941_19335 PF02501 Type II secretion system (T2SS), protein I AV941_19335 PF07963 Prokaryotic N-terminal methylation motif AV941_19340 PF11612 Type II secretion system (T2SS), protein J AV941_19340 PF07963 Prokaryotic N-terminal methylation motif AV941_19350 PF05134 Type II secretion system (T2SS), protein L AV941_19350 PF12693 GspL periplasmic domain AV941_19355 PF04612 Type II secretion system (T2SS), protein M AV941_19370 PF00171 Aldehyde dehydrogenase family AV941_19375 PF01931 Protein of unknown function DUF84 AV941_19380 PF13419 Haloacid dehalogenase-like hydrolase AV941_19385 PF00293 NUDIX domain AV941_19390 PF00459 Inositol monophosphatase family AV941_19405 PF04349 Periplasmic glucan biosynthesis protein, MdoG AV941_19415 PF06794 Uncharacterised protein family (UPF0270) AV941_19420 PF00561 alpha/beta hydrolase fold AV941_19430 PF12848 ABC transporter AV941_19430 PF00005 ABC transporter AV941_19445 PF04102 SlyX AV941_19455 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AV941_19455 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AV941_19465 PF01272 Transcription elongation factor, GreA/GreB, C-term AV941_19465 PF03449 Transcription elongation factor, N-terminal AV941_19470 PF00575 S1 RNA binding domain AV941_19470 PF09371 Tex-like protein N-terminal domain AV941_19470 PF17674 HHH domain AV941_19470 PF16921 Tex protein YqgF-like domain AV941_19475 PF04820 Tryptophan halogenase AV941_19495 PF12833 Helix-turn-helix domain AV941_19505 PF04616 Glycosyl hydrolases family 43 AV941_19515 PF00331 Glycosyl hydrolase family 10 AV941_19515 PF00553 Cellulose binding domain AV941_19515 PF03422 Carbohydrate binding module (family 6) AV941_19520 PF00248 Aldo/keto reductase family AV941_19525 PF02779 Transketolase, pyrimidine binding domain AV941_19525 PF02780 Transketolase, C-terminal domain AV941_19525 PF00456 Transketolase, thiamine diphosphate binding domain AV941_19535 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AV941_19535 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AV941_19540 PF00923 Transaldolase/Fructose-6-phosphate aldolase AV941_19550 PF14310 Fibronectin type III-like domain AV941_19550 PF00933 Glycosyl hydrolase family 3 N terminal domain AV941_19550 PF01915 Glycosyl hydrolase family 3 C-terminal domain AV941_19555 PF00083 Sugar (and other) transporter AV941_19570 PF00457 Glycosyl hydrolases family 11 AV941_19575 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AV941_19600 PF00561 alpha/beta hydrolase fold AV941_19605 PF00156 Phosphoribosyl transferase domain AV941_19615 PF01521 Iron-sulphur cluster biosynthesis AV941_19615 PF01106 NifU-like domain AV941_19625 PF01177 Asp/Glu/Hydantoin racemase AV941_19635 PF01554 MatE AV941_19650 PF02630 SCO1/SenC AV941_19655 PF01040 UbiA prenyltransferase family AV941_19660 PF02628 Cytochrome oxidase assembly protein AV941_19680 PF00510 Cytochrome c oxidase subunit III AV941_19685 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AV941_19690 PF00115 Cytochrome C and Quinol oxidase polypeptide I AV941_19695 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AV941_19695 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AV941_19700 PF00717 Peptidase S24-like AV941_19700 PF01726 LexA DNA binding domain AV941_19705 PF01553 Acyltransferase AV941_19710 PF00291 Pyridoxal-phosphate dependent enzyme AV941_19710 PF00585 C-terminal regulatory domain of Threonine dehydratase AV941_19715 PF00920 Dehydratase family AV941_19720 PF03458 UPF0126 domain AV941_19725 PF01078 Magnesium chelatase, subunit ChlI AV941_19725 PF13335 Magnesium chelatase, subunit ChlI C-terminal AV941_19730 PF03466 LysR substrate binding domain AV941_19730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV941_19735 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AV941_19735 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AV941_19740 PF07690 Major Facilitator Superfamily AV941_19750 PF17243 POTRA domain TamA domain 1 AV941_19750 PF07244 Surface antigen variable number repeat AV941_19750 PF01103 Surface antigen AV941_19755 PF04357 TamB, inner membrane protein subunit of TAM complex AV941_19780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AV941_19780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AV941_19790 PF01472 PUA domain AV941_19790 PF00696 Amino acid kinase family AV941_19810 PF03109 ABC1 family AV941_19835 PF01979 Amidohydrolase family AV941_19860 PF01206 Sulfurtransferase TusA AV941_19865 PF00156 Phosphoribosyl transferase domain AV941_19870 PF01138 3' exoribonuclease family, domain 1 AV941_19870 PF03725 3' exoribonuclease family, domain 2 AV941_19875 PF03755 YicC-like family, N-terminal region AV941_19875 PF08340 Domain of unknown function (DUF1732) AV941_19885 PF07804 HipA-like C-terminal domain AV941_19885 PF13657 HipA N-terminal domain AV941_19890 PF01381 Helix-turn-helix AV941_19925 PF12161 HsdM N-terminal domain AV941_19925 PF02384 N-6 DNA Methylase AV941_19930 PF00271 Helicase conserved C-terminal domain AV941_19930 PF08463 EcoEI R protein C-terminal AV941_19930 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AV941_19930 PF04851 Type III restriction enzyme, res subunit AV941_19955 PF13411 MerR HTH family regulatory protein AV941_19975 PF00749 tRNA synthetases class I (E and Q), catalytic domain AV941_20000 PF00196 Bacterial regulatory proteins, luxR family AV941_20000 PF00072 Response regulator receiver domain AV941_20005 PF13808 DDE_Tnp_1-associated AV941_20005 PF01609 Transposase DDE domain AV941_20010 PF16385 Domain of unknown function AV941_20010 PF00884 Sulfatase AV941_20015 PF07726 ATPase family associated with various cellular activities (AAA) AV941_20015 PF17863 AAA lid domain AV941_20030 PF13519 von Willebrand factor type A domain AV941_20050 PF00732 GMC oxidoreductase AV941_20050 PF05199 GMC oxidoreductase AV941_20055 PF00171 Aldehyde dehydrogenase family AV941_20060 PF00501 AMP-binding enzyme AV941_20060 PF13193 AMP-binding enzyme C-terminal domain AV941_20065 PF02515 CoA-transferase family III AV941_20070 PF00106 short chain dehydrogenase AV941_20075 PF02770 Acyl-CoA dehydrogenase, middle domain AV941_20075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV941_20075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV941_20080 PF00108 Thiolase, N-terminal domain AV941_20080 PF02803 Thiolase, C-terminal domain AV941_20085 PF00378 Enoyl-CoA hydratase/isomerase AV941_20090 PF12833 Helix-turn-helix domain AV941_20090 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AV941_20095 PF00665 Integrase core domain AV941_20095 PF13276 HTH-like domain AV941_20095 PF13333 Integrase core domain AV941_20100 PF01527 Transposase AV941_20110 PF00920 Dehydratase family AV941_20115 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AV941_20130 PF13784 Fic/DOC family N-terminal AV941_20130 PF02661 Fic/DOC family AV941_20140 PF00356 Bacterial regulatory proteins, lacI family AV941_20150 PF05736 OprF membrane domain AV941_20150 PF00691 OmpA family AV941_20155 PF01966 HD domain AV941_20170 PF02798 Glutathione S-transferase, N-terminal domain AV941_20170 PF00043 Glutathione S-transferase, C-terminal domain AV941_20180 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AV941_20180 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AV941_20185 PF02874 ATP synthase alpha/beta family, beta-barrel domain AV941_20185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AV941_20190 PF00231 ATP synthase AV941_20195 PF02874 ATP synthase alpha/beta family, beta-barrel domain AV941_20195 PF00306 ATP synthase alpha/beta chain, C terminal domain AV941_20195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AV941_20200 PF00213 ATP synthase delta (OSCP) subunit AV941_20205 PF00430 ATP synthase B/B' CF(0) AV941_20210 PF00137 ATP synthase subunit C AV941_20215 PF00119 ATP synthase A chain AV941_20225 PF17762 HTH domain found in ParB protein AV941_20225 PF02195 ParB-like nuclease domain AV941_20230 PF13614 AAA domain AV941_20235 PF02527 rRNA small subunit methyltransferase G AV941_20240 PF01134 Glucose inhibited division protein A AV941_20240 PF13932 GidA associated domain AV941_20255 PF00258 Flavodoxin AV941_20260 PF01926 50S ribosome-binding GTPase AV941_20260 PF10396 GTP-binding protein TrmE N-terminus AV941_20260 PF12631 MnmE helical domain AV941_20265 PF04461 Protein of unknown function (DUF520) AV941_20270 PF14849 YidC periplasmic domain AV941_20270 PF02096 60Kd inner membrane protein AV941_20275 PF00825 Ribonuclease P AV941_20280 PF00468 Ribosomal protein L34 AV941_20520 PF13340 Putative transposase of IS4/5 family (DUF4096) AV941_20635 PF00437 Type II/IV secretion system protein AV941_20810 PF00589 Phage integrase family AV941_20825 PF00664 ABC transporter transmembrane region AV941_20825 PF00005 ABC transporter AV941_20845 PF00665 Integrase core domain AV941_20845 PF13276 HTH-like domain AV941_20845 PF13333 Integrase core domain AV941_20925 PF01339 CheB methylesterase AV941_20925 PF00072 Response regulator receiver domain AV941_20950 PF00239 Resolvase, N terminal domain AV941_20950 PF02796 Helix-turn-helix domain of resolvase AV941_20970 PF01609 Transposase DDE domain AV941_20970 PF14706 Transposase DNA-binding AV941_20970 PF02281 Transposase Tn5 dimerisation domain AV941_20980 PF07693 KAP family P-loop domain AV941_21010 PF03527 RHS protein AV941_21010 PF05593 RHS Repeat AV941_21020 PF03527 RHS protein AV941_21020 PF05593 RHS Repeat AV941_21120 PF00975 Thioesterase domain AV941_21130 PF00550 Phosphopantetheine attachment site AV941_21130 PF07993 Male sterility protein AV941_21130 PF00668 Condensation domain AV941_21130 PF13193 AMP-binding enzyme C-terminal domain AV941_21130 PF00501 AMP-binding enzyme AV941_21135 PF00550 Phosphopantetheine attachment site AV941_21135 PF00668 Condensation domain AV941_21135 PF13193 AMP-binding enzyme C-terminal domain AV941_21135 PF00501 AMP-binding enzyme AV941_21135 PF00975 Thioesterase domain AV941_21140 PF16653 Saccharopine dehydrogenase C-terminal domain AV941_21140 PF03435 Saccharopine dehydrogenase NADP binding domain AV941_21145 PF00664 ABC transporter transmembrane region AV941_21145 PF00005 ABC transporter AV941_21150 PF01804 Penicillin amidase AV941_21165 PF03621 MbtH-like protein AV941_21170 PF00550 Phosphopantetheine attachment site AV941_21170 PF00501 AMP-binding enzyme AV941_21170 PF13193 AMP-binding enzyme C-terminal domain AV941_21170 PF00668 Condensation domain AV941_21185 PF00501 AMP-binding enzyme AV941_21185 PF07993 Male sterility protein AV941_21185 PF00550 Phosphopantetheine attachment site AV941_21185 PF00668 Condensation domain AV941_21185 PF13193 AMP-binding enzyme C-terminal domain AV941_21195 PF00501 AMP-binding enzyme AV941_21195 PF00550 Phosphopantetheine attachment site AV941_21195 PF00668 Condensation domain AV941_21195 PF13193 AMP-binding enzyme C-terminal domain AV941_21200 PF00698 Acyl transferase domain AV941_21200 PF00668 Condensation domain AV941_21200 PF16197 Ketoacyl-synthetase C-terminal extension AV941_21200 PF00109 Beta-ketoacyl synthase, N-terminal domain AV941_21200 PF02801 Beta-ketoacyl synthase, C-terminal domain AV941_21200 PF00550 Phosphopantetheine attachment site AV941_21205 PF00501 AMP-binding enzyme AV941_21205 PF00668 Condensation domain AV941_21205 PF00550 Phosphopantetheine attachment site AV941_21205 PF13193 AMP-binding enzyme C-terminal domain AV941_21205 PF07993 Male sterility protein AV941_21210 PF00668 Condensation domain AV941_21210 PF00550 Phosphopantetheine attachment site AV941_21210 PF13193 AMP-binding enzyme C-terminal domain AV941_21210 PF00975 Thioesterase domain AV941_21210 PF00501 AMP-binding enzyme AV941_21230 PF00501 AMP-binding enzyme AV941_21230 PF00975 Thioesterase domain AV941_21230 PF00550 Phosphopantetheine attachment site AV941_21230 PF00668 Condensation domain AV941_21230 PF13193 AMP-binding enzyme C-terminal domain AV941_21235 PF00550 Phosphopantetheine attachment site AV941_21235 PF00501 AMP-binding enzyme AV941_21235 PF00975 Thioesterase domain AV941_21235 PF13193 AMP-binding enzyme C-terminal domain AV941_21235 PF00668 Condensation domain AV941_21270 PF11426 Tn7 transposition regulator TnsC AV941_21270 PF13401 AAA domain AV941_21275 PF00665 Integrase core domain AV941_21280 PF08721 TnsA endonuclease C terminal AV941_21280 PF08722 TnsA endonuclease N terminal AV941_21335 PF13361 UvrD-like helicase C-terminal domain AV941_21335 PF00580 UvrD/REP helicase N-terminal domain AV941_21375 PF00437 Type II/IV secretion system protein AV941_21405 PF00665 Integrase core domain AV941_21410 PF01695 IstB-like ATP binding protein AV941_21420 PF00990 Diguanylate cyclase, GGDEF domain AV941_21420 PF03707 Bacterial signalling protein N terminal repeat AV941_21420 PF00563 EAL domain AV941_21435 PF08448 PAS fold AV941_21435 PF00990 Diguanylate cyclase, GGDEF domain AV941_21520 PF13614 AAA domain