AV941_00005 SM00382 ATPases associated with a variety of cellular activities AV941_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AV941_00010 SM00480 DNA polymerase III beta subunit AV941_00020 SM00387 Histidine kinase-like ATPases AV941_00020 SM00433 TopoisomeraseII AV941_00030 SM00836 DALR anticodon binding domain AV941_00070 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AV941_00070 SM00474 3'-5' exonuclease AV941_00070 SM00475 5'-3' exonuclease AV941_00070 SM00482 DNA polymerase A domain AV941_00105 SM00257 Lysin motif AV941_00195 SM00481 DNA polymerase alpha chain like domain AV941_00285 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AV941_00285 SM01232 AV941_00285 AV941_00315 SM00052 Putative diguanylate phosphodiesterase AV941_00315 SM00267 diguanylate cyclase AV941_00325 SM00829 Enoylreductase AV941_00330 SM00450 Rhodanese Homology Domain AV941_00360 SM00530 Helix-turn-helix XRE-family like proteins AV941_00375 SM00052 Putative diguanylate phosphodiesterase AV941_00375 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV941_00375 SM00267 diguanylate cyclase AV941_00395 SM00530 Helix-turn-helix XRE-family like proteins AV941_00425 SM00849 Metallo-beta-lactamase superfamily AV941_00450 SM00382 ATPases associated with a variety of cellular activities AV941_00455 SM00382 ATPases associated with a variety of cellular activities AV941_00475 SM00450 Rhodanese Homology Domain AV941_00480 SM00849 Metallo-beta-lactamase superfamily AV941_00500 SM00421 helix_turn_helix, Lux Regulon AV941_00560 SM00490 helicase superfamily c-terminal domain AV941_00575 SM00487 DEAD-like helicases superfamily AV941_00590 SM00382 ATPases associated with a variety of cellular activities AV941_00620 SM00849 Metallo-beta-lactamase superfamily AV941_00645 SM00876 Biotin and Thiamin Synthesis associated domain AV941_00695 SM00267 diguanylate cyclase AV941_00705 SM00072 Guanylate kinase homologues. AV941_00710 SM01409 AV941_00710 AV941_00715 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV941_00715 SM00954 Region found in RelA / SpoT proteins AV941_00730 SM00487 DEAD-like helicases superfamily AV941_00730 SM00490 helicase superfamily c-terminal domain AV941_00760 SM00382 ATPases associated with a variety of cellular activities AV941_00825 SM00422 helix_turn_helix, mercury resistance AV941_00850 SM00052 Putative diguanylate phosphodiesterase AV941_00850 SM01034 Sensors of blue-light using FAD AV941_00875 SM00271 DnaJ molecular chaperone homology domain AV941_00915 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV941_00935 SM00052 Putative diguanylate phosphodiesterase AV941_00935 SM00267 diguanylate cyclase AV941_00950 SM00341 Helicase and RNase D C-terminal AV941_00950 SM00487 DEAD-like helicases superfamily AV941_00950 SM00490 helicase superfamily c-terminal domain AV941_00950 SM00956 AV941_00950 AV941_00955 SM00924 MgtE intracellular N domain AV941_00965 SM00267 diguanylate cyclase AV941_00965 SM00448 cheY-homologous receiver domain AV941_00975 SM00971 Serine acetyltransferase, N-terminal AV941_01015 SM00014 Acid phosphatase homologues AV941_01055 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV941_01095 SM00354 helix_turn _helix lactose operon repressor AV941_01160 SM00420 helix_turn_helix, Deoxyribose operon repressor AV941_01160 SM01134 AV941_01160 AV941_01200 SM00965 Secretin and TonB N terminus short domain AV941_01210 SM00028 Tetratricopeptide repeats AV941_01215 SM00382 ATPases associated with a variety of cellular activities AV941_01285 SM00316 Ribosomal protein S1-like RNA-binding domain AV941_01315 SM01038 Beta galactosidase small chain AV941_01320 SM00448 cheY-homologous receiver domain AV941_01320 SM00862 Transcriptional regulatory protein, C terminal AV941_01325 SM00387 Histidine kinase-like ATPases AV941_01350 SM00478 endonuclease III AV941_01350 SM00525 AV941_01350 AV941_01370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV941_01370 SM00387 Histidine kinase-like ATPases AV941_01370 SM00388 His Kinase A (phosphoacceptor) domain AV941_01375 SM00448 cheY-homologous receiver domain AV941_01375 SM00862 Transcriptional regulatory protein, C terminal AV941_01540 SM00422 helix_turn_helix, mercury resistance AV941_01655 SM00448 cheY-homologous receiver domain AV941_01655 SM00862 Transcriptional regulatory protein, C terminal AV941_01660 SM00387 Histidine kinase-like ATPases AV941_01675 SM00422 helix_turn_helix, mercury resistance AV941_01795 SM00354 helix_turn _helix lactose operon repressor AV941_01810 SM00267 diguanylate cyclase AV941_01825 SM00342 helix_turn_helix, arabinose operon control protein AV941_01825 SM00387 Histidine kinase-like ATPases AV941_01825 SM00388 His Kinase A (phosphoacceptor) domain AV941_01825 SM00448 cheY-homologous receiver domain AV941_01840 SM00354 helix_turn _helix lactose operon repressor AV941_01910 SM00855 Phosphoglycerate mutase family AV941_01925 SM00671 Sel1-like repeats. AV941_01930 SM00382 ATPases associated with a variety of cellular activities AV941_01935 SM01403 AV941_01935 AV941_01955 SM01382 AV941_01955 AV941_01955 SM01383 AV941_01955 AV941_01970 SM00322 K homology RNA-binding domain AV941_02020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV941_02020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV941_02045 SM00487 DEAD-like helicases superfamily AV941_02045 SM00490 helicase superfamily c-terminal domain AV941_02070 SM00342 helix_turn_helix, arabinose operon control protein AV941_02080 SM00938 Nitrogen regulatory protein P-II AV941_02100 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AV941_02135 SM00073 Histidine Phosphotransfer domain AV941_02135 SM00387 Histidine kinase-like ATPases AV941_02135 SM00388 His Kinase A (phosphoacceptor) domain AV941_02135 SM00448 cheY-homologous receiver domain AV941_02140 SM00434 DNA Topoisomerase IV AV941_02150 SM00052 Putative diguanylate phosphodiesterase AV941_02150 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV941_02150 SM00091 PAS domain AV941_02150 SM00267 diguanylate cyclase AV941_02155 SM01150 AV941_02155 AV941_02230 SM00965 Secretin and TonB N terminus short domain AV941_02250 SM00842 Cell division protein FtsA AV941_02260 SM00919 Malic enzyme, NAD binding domain AV941_02260 SM01274 AV941_02260 AV941_02280 SM01060 AV941_02280 AV941_02295 SM00052 Putative diguanylate phosphodiesterase AV941_02325 SM00859 Semialdehyde dehydrogenase, NAD binding domain AV941_02330 SM00851 MGS-like domain AV941_02340 SM00448 cheY-homologous receiver domain AV941_02340 SM00862 Transcriptional regulatory protein, C terminal AV941_02345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV941_02345 SM00387 Histidine kinase-like ATPases AV941_02345 SM00388 His Kinase A (phosphoacceptor) domain AV941_02380 SM00450 Rhodanese Homology Domain AV941_02420 SM00479 AV941_02420 AV941_02495 SM00267 diguanylate cyclase AV941_02500 SM01004 Delta-aminolevulinic acid dehydratase AV941_02510 SM00487 DEAD-like helicases superfamily AV941_02510 SM00490 helicase superfamily c-terminal domain AV941_02520 SM00357 Cold shock protein domain AV941_02520 SM00382 ATPases associated with a variety of cellular activities AV941_02520 SM00959 Rho termination factor, N-terminal domain AV941_02530 SM00387 Histidine kinase-like ATPases AV941_02530 SM00388 His Kinase A (phosphoacceptor) domain AV941_02530 SM00448 cheY-homologous receiver domain AV941_02540 SM01001 AIR carboxylase AV941_02600 SM00788 Adenylosuccinate synthetase AV941_02650 SM01005 Alanine racemase, C-terminal domain AV941_02675 SM00062 Bacterial periplasmic substrate-binding proteins AV941_02705 SM00670 Large family of predicted nucleotide-binding domains AV941_02725 SM00530 Helix-turn-helix XRE-family like proteins AV941_02955 SM00257 Lysin motif AV941_02995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV941_02995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV941_02995 SM01049 AV941_02995 AV941_03010 SM00287 Bacterial SH3 domain homologues AV941_03015 SM01118 AV941_03015 AV941_03025 SM00927 DNA mismatch repair enzyme MutH AV941_03035 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV941_03055 SM00448 cheY-homologous receiver domain AV941_03060 SM00267 diguanylate cyclase AV941_03085 SM00487 DEAD-like helicases superfamily AV941_03085 SM00490 helicase superfamily c-terminal domain AV941_03095 SM00670 Large family of predicted nucleotide-binding domains AV941_03110 SM00487 DEAD-like helicases superfamily AV941_03110 SM00490 helicase superfamily c-terminal domain AV941_03115 SM00028 Tetratricopeptide repeats AV941_03150 SM00387 Histidine kinase-like ATPases AV941_03150 SM00433 TopoisomeraseII AV941_03190 SM00841 Elongation factor P, C-terminal AV941_03190 SM01185 AV941_03190 AV941_03245 SM00014 Acid phosphatase homologues AV941_03255 SM01012 AV941_03255 AV941_03285 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AV941_03300 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV941_03300 SM00091 PAS domain AV941_03300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV941_03315 SM00382 ATPases associated with a variety of cellular activities AV941_03375 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AV941_03380 SM01007 Class II Aldolase and Adducin N-terminal domain AV941_03410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV941_03410 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV941_03420 SM00400 zinc finger AV941_03420 SM00493 AV941_03420 AV941_03420 SM00766 DNA primase DnaG DnaB-binding AV941_03445 SM01207 AV941_03445 AV941_03450 SM00905 Dihydroneopterin aldolase AV941_03485 SM00530 Helix-turn-helix XRE-family like proteins AV941_03495 SM00387 Histidine kinase-like ATPases AV941_03500 SM00448 cheY-homologous receiver domain AV941_03500 SM00862 Transcriptional regulatory protein, C terminal AV941_03505 SM00387 Histidine kinase-like ATPases AV941_03505 SM00388 His Kinase A (phosphoacceptor) domain AV941_03515 SM00710 Parallel beta-helix repeats AV941_03550 SM00028 Tetratricopeptide repeats AV941_03555 SM00448 cheY-homologous receiver domain AV941_03555 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV941_03560 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV941_03560 SM00091 PAS domain AV941_03560 SM00387 Histidine kinase-like ATPases AV941_03560 SM00388 His Kinase A (phosphoacceptor) domain AV941_03560 SM00448 cheY-homologous receiver domain AV941_03615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV941_03615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV941_03630 SM00650 Ribosomal RNA adenine dimethylases AV941_03650 SM00271 DnaJ molecular chaperone homology domain AV941_03695 SM00954 Region found in RelA / SpoT proteins AV941_03725 SM00822 AV941_03725 AV941_03730 SM01236 AV941_03730 AV941_03775 SM00387 Histidine kinase-like ATPases AV941_03775 SM00388 His Kinase A (phosphoacceptor) domain AV941_03780 SM00448 cheY-homologous receiver domain AV941_03780 SM00862 Transcriptional regulatory protein, C terminal AV941_03825 SM00116 Domain in cystathionine beta-synthase and other proteins. AV941_03825 SM00924 MgtE intracellular N domain AV941_03855 SM00382 ATPases associated with a variety of cellular activities AV941_03885 SM00382 ATPases associated with a variety of cellular activities AV941_03920 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV941_03925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV941_03990 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV941_03990 SM00091 PAS domain AV941_03990 SM00387 Histidine kinase-like ATPases AV941_03990 SM00388 His Kinase A (phosphoacceptor) domain AV941_03990 SM00448 cheY-homologous receiver domain AV941_04015 SM00861 Transketolase, pyrimidine binding domain AV941_04020 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV941_04085 SM00382 ATPases associated with a variety of cellular activities AV941_04120 SM00347 helix_turn_helix multiple antibiotic resistance protein AV941_04130 SM01263 AV941_04130 AV941_04150 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV941_04150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV941_04190 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV941_04190 SM00866 AV941_04190 AV941_04225 SM00382 ATPases associated with a variety of cellular activities AV941_04315 SM00382 ATPases associated with a variety of cellular activities AV941_04395 SM00487 DEAD-like helicases superfamily AV941_04435 SM00850 LytTr DNA-binding domain AV941_04450 SM00448 cheY-homologous receiver domain AV941_04455 SM00091 PAS domain AV941_04475 SM00729 Elongator protein 3, MiaB family, Radical SAM AV941_04485 SM00487 DEAD-like helicases superfamily AV941_04485 SM00490 helicase superfamily c-terminal domain AV941_04495 SM00382 ATPases associated with a variety of cellular activities AV941_04505 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV941_04520 SM01329 AV941_04520 AV941_04525 SM00917 LeuA allosteric (dimerisation) domain AV941_04535 SM01192 AV941_04535 AV941_04535 SM01193 AV941_04535 AV941_04545 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AV941_04545 SM00534 ATPase domain of DNA mismatch repair MUTS family AV941_04555 SM00382 ATPases associated with a variety of cellular activities AV941_04560 SM00382 ATPases associated with a variety of cellular activities AV941_04580 SM00382 ATPases associated with a variety of cellular activities AV941_04650 SM00382 ATPases associated with a variety of cellular activities AV941_04690 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV941_04695 SM01329 AV941_04695 AV941_04715 SM00267 diguanylate cyclase AV941_04775 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV941_04820 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV941_04830 SM00935 Outer membrane protein (OmpH-like) AV941_04855 SM00481 DNA polymerase alpha chain like domain AV941_04865 SM00977 TilS substrate C-terminal domain AV941_04870 SM00267 diguanylate cyclase AV941_04890 SM00062 Bacterial periplasmic substrate-binding proteins AV941_04895 SM01211 AV941_04895 AV941_04935 SM00421 helix_turn_helix, Lux Regulon AV941_04965 SM00858 AV941_04965 AV941_04970 SM00260 Two component signalling adaptor domain AV941_04970 SM00448 cheY-homologous receiver domain AV941_04975 SM00138 Methyltransferase, chemotaxis proteins AV941_05020 SM00047 Lysozyme subfamily 2 AV941_05090 SM00858 AV941_05090 AV941_05105 SM00822 AV941_05105 AV941_05185 SM00382 ATPases associated with a variety of cellular activities AV941_05190 SM00387 Histidine kinase-like ATPases AV941_05190 SM00388 His Kinase A (phosphoacceptor) domain AV941_05195 SM00382 ATPases associated with a variety of cellular activities AV941_05195 SM00448 cheY-homologous receiver domain AV941_05220 SM00382 ATPases associated with a variety of cellular activities AV941_05280 SM00382 ATPases associated with a variety of cellular activities AV941_05280 SM00962 SRP54-type protein, GTPase domain AV941_05295 SM00448 cheY-homologous receiver domain AV941_05305 SM00073 Histidine Phosphotransfer domain AV941_05305 SM00260 Two component signalling adaptor domain AV941_05305 SM00387 Histidine kinase-like ATPases AV941_05305 SM01231 AV941_05305 AV941_05310 SM00448 cheY-homologous receiver domain AV941_05320 SM00260 Two component signalling adaptor domain AV941_05325 SM00260 Two component signalling adaptor domain AV941_05345 SM01018 B12 binding domain AV941_05370 SM00947 Carbonic anhydrase AV941_05405 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AV941_05445 SM00382 ATPases associated with a variety of cellular activities AV941_05450 SM00382 ATPases associated with a variety of cellular activities AV941_05470 SM00382 ATPases associated with a variety of cellular activities AV941_05495 SM00091 PAS domain AV941_05495 SM00382 ATPases associated with a variety of cellular activities AV941_05510 SM00344 helix_turn_helix ASNC type AV941_05515 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AV941_05545 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV941_05560 SM00028 Tetratricopeptide repeats AV941_05595 SM00028 Tetratricopeptide repeats AV941_05675 SM00829 Enoylreductase AV941_05690 SM00347 helix_turn_helix multiple antibiotic resistance protein AV941_05700 SM00530 Helix-turn-helix XRE-family like proteins AV941_05755 SM00479 AV941_05755 AV941_05820 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV941_05860 SM00422 helix_turn_helix, mercury resistance AV941_05875 SM00422 helix_turn_helix, mercury resistance AV941_05880 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AV941_05995 SM00382 ATPases associated with a variety of cellular activities AV941_06030 SM00382 ATPases associated with a variety of cellular activities AV941_06050 SM00327 von Willebrand factor (vWF) type A domain AV941_06065 SM00778 Zinc-binding domain of primase-helicase AV941_06135 SM00530 Helix-turn-helix XRE-family like proteins AV941_06145 SM00836 DALR anticodon binding domain AV941_06145 SM01016 Arginyl tRNA synthetase N terminal dom AV941_06175 SM00267 diguanylate cyclase AV941_06210 SM00937 AV941_06210 AV941_06260 SM00463 Small MutS-related domain AV941_06290 SM00763 PrkA AAA domain AV941_06320 SM00965 Secretin and TonB N terminus short domain AV941_06335 SM00479 AV941_06335 AV941_06355 SM00357 Cold shock protein domain AV941_06370 SM00478 endonuclease III AV941_06380 SM00900 AV941_06380 AV941_06420 SM00487 DEAD-like helicases superfamily AV941_06420 SM00490 helicase superfamily c-terminal domain AV941_06500 SM00267 diguanylate cyclase AV941_06525 SM00028 Tetratricopeptide repeats AV941_06530 SM00327 von Willebrand factor (vWF) type A domain AV941_06565 SM00052 Putative diguanylate phosphodiesterase AV941_06565 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV941_06565 SM00091 PAS domain AV941_06565 SM00267 diguanylate cyclase AV941_06575 SM00855 Phosphoglycerate mutase family AV941_06585 SM01091 Transporter associated domain AV941_06595 SM00382 ATPases associated with a variety of cellular activities AV941_06595 SM00962 SRP54-type protein, GTPase domain AV941_06595 SM00963 SRP54-type protein, helical bundle domain AV941_06645 SM00382 ATPases associated with a variety of cellular activities AV941_06695 SM00830 Chorismate mutase type II AV941_06700 SM00830 Chorismate mutase type II AV941_06705 SM00448 cheY-homologous receiver domain AV941_06720 SM00331 Sigma factor PP2C-like phosphatases AV941_06720 SM00448 cheY-homologous receiver domain AV941_06730 SM00052 Putative diguanylate phosphodiesterase AV941_06730 SM00267 diguanylate cyclase AV941_06740 SM00387 Histidine kinase-like ATPases AV941_06740 SM00388 His Kinase A (phosphoacceptor) domain AV941_06750 SM00382 ATPases associated with a variety of cellular activities AV941_06750 SM00448 cheY-homologous receiver domain AV941_06785 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV941_06790 SM00382 ATPases associated with a variety of cellular activities AV941_06870 SM00857 Resolvase, N terminal domain AV941_06900 SM00028 Tetratricopeptide repeats AV941_06900 SM00387 Histidine kinase-like ATPases AV941_06900 SM00388 His Kinase A (phosphoacceptor) domain AV941_06900 SM00448 cheY-homologous receiver domain AV941_06910 SM00859 Semialdehyde dehydrogenase, NAD binding domain AV941_06925 SM00267 diguanylate cyclase AV941_06950 SM00116 Domain in cystathionine beta-synthase and other proteins. AV941_06990 SM00267 diguanylate cyclase AV941_07060 SM00729 Elongator protein 3, MiaB family, Radical SAM AV941_07060 SM00876 Biotin and Thiamin Synthesis associated domain AV941_07085 SM00226 Low molecular weight phosphatase family AV941_07095 SM00382 ATPases associated with a variety of cellular activities AV941_07115 SM00382 ATPases associated with a variety of cellular activities AV941_07120 SM00729 Elongator protein 3, MiaB family, Radical SAM AV941_07130 SM00028 Tetratricopeptide repeats AV941_07130 SM00448 cheY-homologous receiver domain AV941_07200 SM01321 AV941_07200 AV941_07215 SM00382 ATPases associated with a variety of cellular activities AV941_07230 SM00905 Dihydroneopterin aldolase AV941_07240 SM00387 Histidine kinase-like ATPases AV941_07245 SM00448 cheY-homologous receiver domain AV941_07245 SM00862 Transcriptional regulatory protein, C terminal AV941_07295 SM00481 DNA polymerase alpha chain like domain AV941_07315 SM00363 S4 RNA-binding domain AV941_07325 SM01266 AV941_07325 AV941_07350 SM00382 ATPases associated with a variety of cellular activities AV941_07415 SM00421 helix_turn_helix, Lux Regulon AV941_07415 SM00448 cheY-homologous receiver domain AV941_07420 SM00387 Histidine kinase-like ATPases AV941_07420 SM00388 His Kinase A (phosphoacceptor) domain AV941_07420 SM00448 cheY-homologous receiver domain AV941_07435 SM00271 DnaJ molecular chaperone homology domain AV941_07445 SM00052 Putative diguanylate phosphodiesterase AV941_07445 SM00091 PAS domain AV941_07445 SM00267 diguanylate cyclase AV941_07465 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AV941_07470 SM00851 MGS-like domain AV941_07470 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AV941_07520 SM00116 Domain in cystathionine beta-synthase and other proteins. AV941_07520 SM01091 Transporter associated domain AV941_07535 SM00729 Elongator protein 3, MiaB family, Radical SAM AV941_07575 SM00903 Flavin reductase like domain AV941_07650 SM00829 Enoylreductase AV941_07665 SM01400 AV941_07665 AV941_07690 SM00937 AV941_07690 AV941_07740 SM00838 Elongation factor G C-terminus AV941_07740 SM00889 Elongation factor G, domain IV AV941_07755 SM00219 Tyrosine kinase, catalytic domain AV941_07755 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AV941_07765 SM00460 Transglutaminase/protease-like homologues AV941_07795 SM00052 Putative diguanylate phosphodiesterase AV941_07795 SM00267 diguanylate cyclase AV941_07865 SM00347 helix_turn_helix multiple antibiotic resistance protein AV941_07880 SM00864 Tubulin/FtsZ family, GTPase domain AV941_07880 SM00865 Tubulin/FtsZ family, C-terminal domain AV941_07890 SM00052 Putative diguanylate phosphodiesterase AV941_07890 SM00091 PAS domain AV941_07890 SM00267 diguanylate cyclase AV941_07895 SM00052 Putative diguanylate phosphodiesterase AV941_07895 SM00267 diguanylate cyclase AV941_07925 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV941_07940 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV941_07940 SM00091 PAS domain AV941_07940 SM00267 diguanylate cyclase AV941_07970 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV941_07975 SM01092 CO dehydrogenase flavoprotein C-terminal domain AV941_08015 SM00448 cheY-homologous receiver domain AV941_08025 SM00267 diguanylate cyclase AV941_08025 SM00448 cheY-homologous receiver domain AV941_08030 SM00387 Histidine kinase-like ATPases AV941_08030 SM00388 His Kinase A (phosphoacceptor) domain AV941_08030 SM00448 cheY-homologous receiver domain AV941_08115 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AV941_08185 SM00052 Putative diguanylate phosphodiesterase AV941_08185 SM00267 diguanylate cyclase AV941_08265 SM00873 B3/4 domain AV941_08265 SM00874 tRNA synthetase B5 domain AV941_08265 SM00896 Ferredoxin-fold anticodon binding domain AV941_08270 SM00411 bacterial (prokaryotic) histone like domain AV941_08305 SM00487 DEAD-like helicases superfamily AV941_08305 SM00490 helicase superfamily c-terminal domain AV941_08305 SM00982 AV941_08305 AV941_08305 SM01058 CarD-like/TRCF domain AV941_08325 SM00387 Histidine kinase-like ATPases AV941_08330 SM00897 FIST N domain AV941_08330 SM01204 AV941_08330 AV941_08410 SM00878 Biotin carboxylase C-terminal domain AV941_08430 SM00422 helix_turn_helix, mercury resistance AV941_08450 SM00062 Bacterial periplasmic substrate-binding proteins AV941_08450 SM00267 diguanylate cyclase AV941_08505 SM00843 AV941_08505 AV941_08545 SM00421 helix_turn_helix, Lux Regulon AV941_08560 SM01040 BRO family, N-terminal domain AV941_08820 SM00387 Histidine kinase-like ATPases AV941_08820 SM00388 His Kinase A (phosphoacceptor) domain AV941_08820 SM00448 cheY-homologous receiver domain AV941_08830 SM00116 Domain in cystathionine beta-synthase and other proteins. AV941_08850 SM00267 diguanylate cyclase AV941_08855 SM00342 helix_turn_helix, arabinose operon control protein AV941_08865 SM00382 ATPases associated with a variety of cellular activities AV941_08865 SM00487 DEAD-like helicases superfamily AV941_08865 SM00490 helicase superfamily c-terminal domain AV941_08865 SM00847 Helicase associated domain (HA2) Add an annotation AV941_08880 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AV941_08885 SM00829 Enoylreductase AV941_08895 SM00479 AV941_08895 AV941_08925 SM00052 Putative diguanylate phosphodiesterase AV941_08930 SM00382 ATPases associated with a variety of cellular activities AV941_08945 SM00634 Bacterial Ig-like domain (group 1) AV941_08960 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AV941_08960 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AV941_08960 SM00493 AV941_08960 AV941_09000 SM00587 ZnF_C4 abd HLH domain containing kinases domain AV941_09005 SM00316 Ribosomal protein S1-like RNA-binding domain AV941_09010 SM00363 S4 RNA-binding domain AV941_09045 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AV941_09050 SM00822 AV941_09050 AV941_09060 SM00825 Beta-ketoacyl synthase AV941_09100 SM00267 diguanylate cyclase AV941_09215 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV941_09215 SM00091 PAS domain AV941_09215 SM00387 Histidine kinase-like ATPases AV941_09215 SM00388 His Kinase A (phosphoacceptor) domain AV941_09215 SM00448 cheY-homologous receiver domain AV941_09220 SM00448 cheY-homologous receiver domain AV941_09220 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV941_09230 SM00316 Ribosomal protein S1-like RNA-binding domain AV941_09255 SM01387 AV941_09255 AV941_09260 SM00363 S4 RNA-binding domain AV941_09275 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV941_09280 SM00448 cheY-homologous receiver domain AV941_09345 SM00729 Elongator protein 3, MiaB family, Radical SAM AV941_09385 SM00382 ATPases associated with a variety of cellular activities AV941_09415 SM00267 diguanylate cyclase AV941_09435 SM00857 Resolvase, N terminal domain AV941_09515 SM00347 helix_turn_helix multiple antibiotic resistance protein AV941_09530 SM00028 Tetratricopeptide repeats AV941_09555 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV941_09580 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AV941_09585 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AV941_09615 SM00357 Cold shock protein domain AV941_09625 SM00382 ATPases associated with a variety of cellular activities AV941_09625 SM01086 C-terminal, D2-small domain, of ClpB protein AV941_09630 SM00316 Ribosomal protein S1-like RNA-binding domain AV941_09655 SM00731 SprT homologues. AV941_09685 SM00870 AV941_09685 AV941_09690 SM00729 Elongator protein 3, MiaB family, Radical SAM AV941_09705 SM00936 Penicillin-binding protein 5, C-terminal domain AV941_09775 SM00267 diguanylate cyclase AV941_09785 SM01103 AV941_09785 AV941_09795 SM00382 ATPases associated with a variety of cellular activities AV941_09825 SM00052 Putative diguanylate phosphodiesterase AV941_09825 SM00267 diguanylate cyclase AV941_09825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV941_09835 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AV941_09840 SM00046 Diacylglycerol kinase catalytic domain (presumed) AV941_09840 SM00195 Dual specificity phosphatase, catalytic domain AV941_09840 SM00404 Protein tyrosine phosphatase, catalytic domain motif AV941_09890 SM00507 HNH nucleases AV941_09895 SM00316 Ribosomal protein S1-like RNA-binding domain AV941_09895 SM00322 K homology RNA-binding domain AV941_09925 SM01321 AV941_09925 AV941_09940 SM00382 ATPases associated with a variety of cellular activities AV941_10055 SM00028 Tetratricopeptide repeats AV941_10075 SM00771 ZipA, C-terminal domain (FtsZ-binding) AV941_10080 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV941_10080 SM00292 breast cancer carboxy-terminal domain AV941_10080 SM00532 Ligase N family AV941_10090 SM00849 Metallo-beta-lactamase superfamily AV941_10095 SM00382 ATPases associated with a variety of cellular activities AV941_10120 SM00729 Elongator protein 3, MiaB family, Radical SAM AV941_10185 SM00861 Transketolase, pyrimidine binding domain AV941_10200 SM00881 CoA binding domain AV941_10240 SM00642 Alpha-amylase domain AV941_10245 SM00642 Alpha-amylase domain AV941_10255 SM00642 Alpha-amylase domain AV941_10260 SM00354 helix_turn _helix lactose operon repressor AV941_10375 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV941_10390 SM00387 Histidine kinase-like ATPases AV941_10395 SM00448 cheY-homologous receiver domain AV941_10395 SM00850 LytTr DNA-binding domain AV941_10415 SM00450 Rhodanese Homology Domain AV941_10415 SM00849 Metallo-beta-lactamase superfamily AV941_10430 SM00028 Tetratricopeptide repeats AV941_10430 SM00448 cheY-homologous receiver domain AV941_10440 SM00450 Rhodanese Homology Domain AV941_10445 SM00054 EF-hand, calcium binding motif AV941_10450 SM00487 DEAD-like helicases superfamily AV941_10450 SM00490 helicase superfamily c-terminal domain AV941_10455 SM00882 Coenzyme A transferase AV941_10460 SM00882 Coenzyme A transferase AV941_10475 SM00387 Histidine kinase-like ATPases AV941_10525 SM00861 Transketolase, pyrimidine binding domain AV941_10540 SM00220 Serine/Threonine protein kinases, catalytic domain AV941_10575 SM00945 ProQ/FINO family AV941_10580 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV941_10580 SM00245 tail specific protease AV941_10635 SM00981 AV941_10635 AV941_10645 SM00382 ATPases associated with a variety of cellular activities AV941_10785 SM00100 Cyclic nucleotide-monophosphate binding domain AV941_10785 SM00419 helix_turn_helix, cAMP Regulatory protein AV941_10810 SM00047 Lysozyme subfamily 2 AV941_10830 SM00450 Rhodanese Homology Domain AV941_10840 SM01144 AV941_10840 AV941_10865 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV941_10865 SM00465 GIY-YIG type nucleases (URI domain) AV941_10870 SM00421 helix_turn_helix, Lux Regulon AV941_10870 SM00448 cheY-homologous receiver domain AV941_10965 SM00382 ATPases associated with a variety of cellular activities AV941_10975 SM00843 AV941_10975 AV941_10980 SM00344 helix_turn_helix ASNC type AV941_10985 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AV941_10985 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AV941_10990 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AV941_11010 SM00411 bacterial (prokaryotic) histone like domain AV941_11015 SM00316 Ribosomal protein S1-like RNA-binding domain AV941_11035 SM00434 DNA Topoisomerase IV AV941_11070 SM00052 Putative diguanylate phosphodiesterase AV941_11070 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV941_11070 SM00267 diguanylate cyclase AV941_11090 SM01130 AV941_11090 AV941_11170 SM00421 helix_turn_helix, Lux Regulon AV941_11170 SM00448 cheY-homologous receiver domain AV941_11200 SM00642 Alpha-amylase domain AV941_11210 SM00852 Probable molybdopterin binding domain AV941_11230 SM00382 ATPases associated with a variety of cellular activities AV941_11270 SM00530 Helix-turn-helix XRE-family like proteins AV941_11340 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AV941_11350 SM00563 Phosphate acyltransferases AV941_11390 SM00342 helix_turn_helix, arabinose operon control protein AV941_11425 SM00893 Electron transfer flavoprotein domain AV941_11430 SM00893 Electron transfer flavoprotein domain AV941_11440 SM00528 Domain in histone-like proteins of HNS family AV941_11460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV941_11460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV941_11475 SM00797 Allophanate hydrolase subunit 2 AV941_11480 SM00796 Allophanate hydrolase subunit 1 AV941_11535 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV941_11580 SM00342 helix_turn_helix, arabinose operon control protein AV941_11595 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV941_11625 SM00829 Enoylreductase AV941_11640 SM00855 Phosphoglycerate mutase family AV941_11665 SM00729 Elongator protein 3, MiaB family, Radical SAM AV941_11670 SM00382 ATPases associated with a variety of cellular activities AV941_11700 SM00852 Probable molybdopterin binding domain AV941_11820 SM00052 Putative diguanylate phosphodiesterase AV941_11820 SM00267 diguanylate cyclase AV941_11825 SM00849 Metallo-beta-lactamase superfamily AV941_11860 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AV941_11865 SM00450 Rhodanese Homology Domain AV941_11880 SM00382 ATPases associated with a variety of cellular activities AV941_11880 SM00448 cheY-homologous receiver domain AV941_11890 SM00387 Histidine kinase-like ATPases AV941_11890 SM00388 His Kinase A (phosphoacceptor) domain AV941_11895 SM00448 cheY-homologous receiver domain AV941_11900 SM00387 Histidine kinase-like ATPases AV941_11900 SM00388 His Kinase A (phosphoacceptor) domain AV941_11900 SM00448 cheY-homologous receiver domain AV941_11965 SM00631 AV941_11965 AV941_11970 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV941_11985 SM01350 AV941_11985 AV941_11990 SM00642 Alpha-amylase domain AV941_11995 SM00642 Alpha-amylase domain AV941_12005 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV941_12055 SM00342 helix_turn_helix, arabinose operon control protein AV941_12065 SM00893 Electron transfer flavoprotein domain AV941_12070 SM00893 Electron transfer flavoprotein domain AV941_12125 SM00749 bacterial OsmY and nodulation domain AV941_12190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV941_12190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV941_12215 SM00052 Putative diguanylate phosphodiesterase AV941_12215 SM00267 diguanylate cyclase AV941_12225 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV941_12230 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV941_12230 SM00387 Histidine kinase-like ATPases AV941_12340 SM00849 Metallo-beta-lactamase superfamily AV941_12345 SM00257 Lysin motif AV941_12370 SM00840 AV941_12370 AV941_12390 SM00244 prohibitin homologues AV941_12400 SM00642 Alpha-amylase domain AV941_12410 SM00829 Enoylreductase AV941_12415 SM01060 AV941_12415 AV941_12420 SM00829 Enoylreductase AV941_12435 SM00539 Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins. AV941_12495 SM00859 Semialdehyde dehydrogenase, NAD binding domain AV941_12505 SM01007 Class II Aldolase and Adducin N-terminal domain AV941_12510 SM00100 Cyclic nucleotide-monophosphate binding domain AV941_12510 SM00419 helix_turn_helix, cAMP Regulatory protein AV941_12530 SM00825 Beta-ketoacyl synthase AV941_12580 SM00422 helix_turn_helix, mercury resistance AV941_12585 SM00829 Enoylreductase AV941_12615 SM00382 ATPases associated with a variety of cellular activities AV941_12625 SM00387 Histidine kinase-like ATPases AV941_12625 SM00388 His Kinase A (phosphoacceptor) domain AV941_12625 SM00448 cheY-homologous receiver domain AV941_12745 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV941_12790 SM00341 Helicase and RNase D C-terminal AV941_12790 SM00474 3'-5' exonuclease AV941_12820 SM00487 DEAD-like helicases superfamily AV941_12820 SM00488 AV941_12820 AV941_12820 SM00491 AV941_12820 AV941_12830 SM00014 Acid phosphatase homologues AV941_12845 SM00642 Alpha-amylase domain AV941_12965 SM00387 Histidine kinase-like ATPases AV941_12970 SM00493 AV941_12970 AV941_12980 SM00448 cheY-homologous receiver domain AV941_12990 SM00382 ATPases associated with a variety of cellular activities AV941_13015 SM00862 Transcriptional regulatory protein, C terminal AV941_13025 SM00091 PAS domain AV941_13025 SM00267 diguanylate cyclase AV941_13060 SM00028 Tetratricopeptide repeats AV941_13070 SM00382 ATPases associated with a variety of cellular activities AV941_13070 SM01086 C-terminal, D2-small domain, of ClpB protein AV941_13080 SM00363 S4 RNA-binding domain AV941_13150 SM00861 Transketolase, pyrimidine binding domain AV941_13205 SM00382 ATPases associated with a variety of cellular activities AV941_13215 SM00382 ATPases associated with a variety of cellular activities AV941_13250 SM00358 Double-stranded RNA binding motif AV941_13250 SM00535 Ribonuclease III family AV941_13260 SM00838 Elongation factor G C-terminus AV941_13315 SM00938 Nitrogen regulatory protein P-II AV941_13400 SM00904 Riboflavin kinase AV941_13445 SM00563 Phosphate acyltransferases AV941_13460 SM00411 bacterial (prokaryotic) histone like domain AV941_13470 SM00382 ATPases associated with a variety of cellular activities AV941_13470 SM00464 Found in ATP-dependent protease La (LON) AV941_13475 SM00382 ATPases associated with a variety of cellular activities AV941_13475 SM00994 ClpX C4-type zinc finger AV941_13475 SM01086 C-terminal, D2-small domain, of ClpB protein AV941_13555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV941_13565 SM00116 Domain in cystathionine beta-synthase and other proteins. AV941_13565 SM01240 AV941_13565 AV941_13585 SM00382 ATPases associated with a variety of cellular activities AV941_13590 SM00564 beta-propeller repeat AV941_13595 SM00028 Tetratricopeptide repeats AV941_13615 SM00028 Tetratricopeptide repeats AV941_13615 SM00257 Lysin motif AV941_13625 SM00562 AV941_13625 AV941_13655 SM00382 ATPases associated with a variety of cellular activities AV941_13700 SM00850 LytTr DNA-binding domain AV941_13715 SM01323 AV941_13715 AV941_13780 SM00382 ATPases associated with a variety of cellular activities AV941_13800 SM00098 Alkaline phosphatase homologues AV941_13805 SM00260 Two component signalling adaptor domain AV941_13805 SM00448 cheY-homologous receiver domain AV941_13870 SM00028 Tetratricopeptide repeats AV941_13900 SM00984 UDP binding domain AV941_14030 SM00382 ATPases associated with a variety of cellular activities AV941_14110 SM00052 Putative diguanylate phosphodiesterase AV941_14110 SM00267 diguanylate cyclase AV941_14125 SM00354 helix_turn _helix lactose operon repressor AV941_14165 SM00967 RNA 2'-O ribose methyltransferase substrate binding AV941_14240 SM00953 AV941_14240 AV941_14260 SM00448 cheY-homologous receiver domain AV941_14260 SM00862 Transcriptional regulatory protein, C terminal AV941_14265 SM00387 Histidine kinase-like ATPases AV941_14265 SM00388 His Kinase A (phosphoacceptor) domain AV941_14310 SM01092 CO dehydrogenase flavoprotein C-terminal domain AV941_14315 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV941_14360 SM01322 AV941_14360 AV941_14405 SM00487 DEAD-like helicases superfamily AV941_14405 SM00490 helicase superfamily c-terminal domain AV941_14425 SM00028 Tetratricopeptide repeats AV941_14425 SM00387 Histidine kinase-like ATPases AV941_14425 SM00388 His Kinase A (phosphoacceptor) domain AV941_14425 SM00448 cheY-homologous receiver domain AV941_14435 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV941_14435 SM00387 Histidine kinase-like ATPases AV941_14435 SM00388 His Kinase A (phosphoacceptor) domain AV941_14435 SM00448 cheY-homologous receiver domain AV941_14455 SM00448 cheY-homologous receiver domain AV941_14455 SM00862 Transcriptional regulatory protein, C terminal AV941_14460 SM00388 His Kinase A (phosphoacceptor) domain AV941_14470 SM00530 Helix-turn-helix XRE-family like proteins AV941_14475 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AV941_14485 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AV941_14495 SM00244 prohibitin homologues AV941_14515 SM00382 ATPases associated with a variety of cellular activities AV941_14525 SM00696 Repeats found in Drosophila proteins. AV941_14555 SM00422 helix_turn_helix, mercury resistance AV941_14565 SM00342 helix_turn_helix, arabinose operon control protein AV941_14665 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AV941_14690 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV941_14690 SM00382 ATPases associated with a variety of cellular activities AV941_14765 SM01011 Aminopeptidase P, N-terminal domain AV941_14790 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV941_14790 SM00387 Histidine kinase-like ATPases AV941_14790 SM00388 His Kinase A (phosphoacceptor) domain AV941_14790 SM00448 cheY-homologous receiver domain AV941_14875 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV941_14875 SM00895 AV941_14875 AV941_14885 SM00644 AV941_14885 AV941_14940 SM00957 SecA DEAD-like domain AV941_14940 SM00958 SecA preprotein cross-linking domain AV941_14955 SM00864 Tubulin/FtsZ family, GTPase domain AV941_14955 SM00865 Tubulin/FtsZ family, C-terminal domain AV941_14960 SM00842 Cell division protein FtsA AV941_15080 SM00028 Tetratricopeptide repeats AV941_15080 SM00267 diguanylate cyclase AV941_15090 SM00382 ATPases associated with a variety of cellular activities AV941_15090 SM00448 cheY-homologous receiver domain AV941_15095 SM00387 Histidine kinase-like ATPases AV941_15140 SM00732 Likely ribonuclease with RNase H fold. AV941_15150 SM00382 ATPases associated with a variety of cellular activities AV941_15240 SM00360 RNA recognition motif AV941_15265 SM00986 Uracil DNA glycosylase superfamily AV941_15265 SM00987 UreE urease accessory protein, C-terminal domain AV941_15285 SM00382 ATPases associated with a variety of cellular activities AV941_15295 SM00829 Enoylreductase AV941_15305 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AV941_15310 SM00226 Low molecular weight phosphatase family AV941_15325 SM00448 cheY-homologous receiver domain AV941_15335 SM00448 cheY-homologous receiver domain AV941_15335 SM00862 Transcriptional regulatory protein, C terminal AV941_15340 SM00387 Histidine kinase-like ATPases AV941_15340 SM00388 His Kinase A (phosphoacceptor) domain AV941_15430 SM00749 bacterial OsmY and nodulation domain AV941_15455 SM00421 helix_turn_helix, Lux Regulon AV941_15455 SM00448 cheY-homologous receiver domain AV941_15475 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV941_15475 SM00895 AV941_15475 AV941_15500 SM00267 diguanylate cyclase AV941_15500 SM00448 cheY-homologous receiver domain AV941_15545 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV941_15545 SM00091 PAS domain AV941_15545 SM00387 Histidine kinase-like ATPases AV941_15545 SM00388 His Kinase A (phosphoacceptor) domain AV941_15545 SM00448 cheY-homologous receiver domain AV941_15550 SM00287 Bacterial SH3 domain homologues AV941_15550 SM00644 AV941_15550 AV941_15590 SM00450 Rhodanese Homology Domain AV941_15740 SM00448 cheY-homologous receiver domain AV941_15750 SM01230 AV941_15750 AV941_15760 SM00091 PAS domain AV941_15760 SM00387 Histidine kinase-like ATPases AV941_15760 SM00388 His Kinase A (phosphoacceptor) domain AV941_15765 SM00382 ATPases associated with a variety of cellular activities AV941_15765 SM00448 cheY-homologous receiver domain AV941_15770 SM00073 Histidine Phosphotransfer domain AV941_15775 SM00563 Phosphate acyltransferases AV941_15805 SM00244 prohibitin homologues AV941_15815 SM00387 Histidine kinase-like ATPases AV941_15815 SM00388 His Kinase A (phosphoacceptor) domain AV941_15815 SM00448 cheY-homologous receiver domain AV941_15815 SM01358 AV941_15815 AV941_15930 SM00382 ATPases associated with a variety of cellular activities AV941_15950 SM00530 Helix-turn-helix XRE-family like proteins AV941_16015 SM00028 Tetratricopeptide repeats AV941_16030 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV941_16030 SM00895 AV941_16030 AV941_16050 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AV941_16070 SM00267 diguanylate cyclase AV941_16105 SM00448 cheY-homologous receiver domain AV941_16115 SM00886 Stress responsive A/B Barrel Domain AV941_16125 SM00382 ATPases associated with a variety of cellular activities AV941_16195 SM00849 Metallo-beta-lactamase superfamily AV941_16195 SM01027 Beta-Casp domain AV941_16210 SM00996 S-adenosyl-L-homocysteine hydrolase AV941_16210 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AV941_16230 SM00564 beta-propeller repeat AV941_16235 SM00062 Bacterial periplasmic substrate-binding proteins AV941_16250 SM00382 ATPases associated with a variety of cellular activities AV941_16280 SM00729 Elongator protein 3, MiaB family, Radical SAM AV941_16305 SM00421 helix_turn_helix, Lux Regulon AV941_16305 SM00448 cheY-homologous receiver domain AV941_16310 SM00091 PAS domain AV941_16310 SM00387 Histidine kinase-like ATPases AV941_16310 SM00388 His Kinase A (phosphoacceptor) domain AV941_16310 SM00448 cheY-homologous receiver domain AV941_16315 SM00897 FIST N domain AV941_16315 SM01204 AV941_16315 AV941_16320 SM00900 AV941_16320 AV941_16330 SM00421 helix_turn_helix, Lux Regulon AV941_16330 SM00448 cheY-homologous receiver domain AV941_16370 SM00965 Secretin and TonB N terminus short domain AV941_16395 SM00421 helix_turn_helix, Lux Regulon AV941_16425 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AV941_16430 SM00421 helix_turn_helix, Lux Regulon AV941_16430 SM00448 cheY-homologous receiver domain AV941_16445 SM00487 DEAD-like helicases superfamily AV941_16445 SM00490 helicase superfamily c-terminal domain AV941_16480 SM00966 SpoVT / AbrB like domain AV941_16530 SM00267 diguanylate cyclase AV941_16600 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV941_16600 SM00895 AV941_16600 AV941_16625 SM00155 Phospholipase D. Active site motifs. AV941_16655 SM00448 cheY-homologous receiver domain AV941_16665 SM00387 Histidine kinase-like ATPases AV941_16670 SM00849 Metallo-beta-lactamase superfamily AV941_16675 SM00486 DNA polymerase type-B family AV941_16710 SM00360 RNA recognition motif AV941_16745 SM00986 Uracil DNA glycosylase superfamily AV941_16745 SM00987 UreE urease accessory protein, C-terminal domain AV941_16750 SM00052 Putative diguanylate phosphodiesterase AV941_16750 SM00267 diguanylate cyclase AV941_16750 SM00448 cheY-homologous receiver domain AV941_16830 SM00173 Ras subfamily of RAS small GTPases AV941_16830 SM00175 Rab subfamily of small GTPases AV941_16835 SM00052 Putative diguanylate phosphodiesterase AV941_16835 SM00267 diguanylate cyclase AV941_16845 SM00563 Phosphate acyltransferases AV941_16850 SM00563 Phosphate acyltransferases AV941_16980 SM00052 Putative diguanylate phosphodiesterase AV941_17005 SM00849 Metallo-beta-lactamase superfamily AV941_17040 SM00530 Helix-turn-helix XRE-family like proteins AV941_17060 SM00903 Flavin reductase like domain AV941_17095 SM00100 Cyclic nucleotide-monophosphate binding domain AV941_17110 SM00849 Metallo-beta-lactamase superfamily AV941_17150 SM00900 AV941_17150 AV941_17240 SM00028 Tetratricopeptide repeats AV941_17250 SM00267 diguanylate cyclase AV941_17250 SM00448 cheY-homologous receiver domain AV941_17255 SM00479 AV941_17255 AV941_17260 SM00116 Domain in cystathionine beta-synthase and other proteins. AV941_17275 SM00387 Histidine kinase-like ATPases AV941_17275 SM00388 His Kinase A (phosphoacceptor) domain AV941_17275 SM00448 cheY-homologous receiver domain AV941_17305 SM00421 helix_turn_helix, Lux Regulon AV941_17305 SM00448 cheY-homologous receiver domain AV941_17330 SM01358 AV941_17330 AV941_17340 SM00052 Putative diguanylate phosphodiesterase AV941_17340 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV941_17340 SM00091 PAS domain AV941_17340 SM00267 diguanylate cyclase AV941_17385 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV941_17445 SM00984 UDP binding domain AV941_17685 SM00662 RNA polymerases D AV941_17690 SM00363 S4 RNA-binding domain AV941_17690 SM01390 AV941_17690 AV941_17755 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AV941_17760 SM01374 AV941_17760 AV941_17765 SM00387 Histidine kinase-like ATPases AV941_17765 SM00388 His Kinase A (phosphoacceptor) domain AV941_17765 SM00448 cheY-homologous receiver domain AV941_17785 SM00967 RNA 2'-O ribose methyltransferase substrate binding AV941_17790 SM00316 Ribosomal protein S1-like RNA-binding domain AV941_17790 SM00357 Cold shock protein domain AV941_17790 SM00955 AV941_17790 AV941_17835 SM00671 Sel1-like repeats. AV941_17875 SM00387 Histidine kinase-like ATPases AV941_17875 SM00388 His Kinase A (phosphoacceptor) domain AV941_17875 SM00448 cheY-homologous receiver domain AV941_17895 SM00344 helix_turn_helix ASNC type AV941_17905 SM00357 Cold shock protein domain AV941_17935 SM00448 cheY-homologous receiver domain AV941_17945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV941_17945 SM00387 Histidine kinase-like ATPases AV941_17945 SM00388 His Kinase A (phosphoacceptor) domain AV941_17950 SM00448 cheY-homologous receiver domain AV941_18015 SM00382 ATPases associated with a variety of cellular activities AV941_18020 SM00421 helix_turn_helix, Lux Regulon AV941_18045 SM00382 ATPases associated with a variety of cellular activities AV941_18045 SM01086 C-terminal, D2-small domain, of ClpB protein AV941_18060 SM00487 DEAD-like helicases superfamily AV941_18060 SM00490 helicase superfamily c-terminal domain AV941_18075 SM00919 Malic enzyme, NAD binding domain AV941_18075 SM01274 AV941_18075 AV941_18125 SM00052 Putative diguanylate phosphodiesterase AV941_18140 SM00382 ATPases associated with a variety of cellular activities AV941_18145 SM00382 ATPases associated with a variety of cellular activities AV941_18145 SM00962 SRP54-type protein, GTPase domain AV941_18145 SM00963 SRP54-type protein, helical bundle domain AV941_18230 SM00382 ATPases associated with a variety of cellular activities AV941_18235 SM00448 cheY-homologous receiver domain AV941_18235 SM00862 Transcriptional regulatory protein, C terminal AV941_18240 SM00387 Histidine kinase-like ATPases AV941_18240 SM00388 His Kinase A (phosphoacceptor) domain AV941_18250 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV941_18265 SM00116 Domain in cystathionine beta-synthase and other proteins. AV941_18300 SM00838 Elongation factor G C-terminus AV941_18300 SM00889 Elongation factor G, domain IV AV941_18315 SM00663 RNA polymerase I subunit A N-terminus AV941_18340 SM00649 Ribosomal protein L11/L12 AV941_18360 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AV941_18360 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AV941_18375 SM00382 ATPases associated with a variety of cellular activities AV941_18395 SM00487 DEAD-like helicases superfamily AV941_18395 SM00490 helicase superfamily c-terminal domain AV941_18430 SM00642 Alpha-amylase domain AV941_18470 SM00487 DEAD-like helicases superfamily AV941_18470 SM00490 helicase superfamily c-terminal domain AV941_18475 SM00849 Metallo-beta-lactamase superfamily AV941_18485 SM00841 Elongation factor P, C-terminal AV941_18485 SM01185 AV941_18485 AV941_18560 SM00244 prohibitin homologues AV941_18565 SM00244 prohibitin homologues AV941_18585 SM01340 AV941_18585 AV941_18590 SM00257 Lysin motif AV941_18590 SM00646 AV941_18590 AV941_18650 SM00382 ATPases associated with a variety of cellular activities AV941_18685 SM00849 Metallo-beta-lactamase superfamily AV941_18705 SM00387 Histidine kinase-like ATPases AV941_18705 SM00388 His Kinase A (phosphoacceptor) domain AV941_18715 SM00382 ATPases associated with a variety of cellular activities AV941_18725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV941_18730 SM00387 Histidine kinase-like ATPases AV941_18735 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV941_18780 SM00354 helix_turn _helix lactose operon repressor AV941_18800 SM00267 diguanylate cyclase AV941_18855 SM00116 Domain in cystathionine beta-synthase and other proteins. AV941_18870 SM00867 YceI-like domain AV941_18900 SM00829 Enoylreductase AV941_18905 SM00267 diguanylate cyclase AV941_18910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV941_18910 SM00387 Histidine kinase-like ATPases AV941_18910 SM00388 His Kinase A (phosphoacceptor) domain AV941_18910 SM00448 cheY-homologous receiver domain AV941_18930 SM00420 helix_turn_helix, Deoxyribose operon repressor AV941_18930 SM01134 AV941_18930 AV941_18945 SM00267 diguanylate cyclase AV941_18960 SM00342 helix_turn_helix, arabinose operon control protein AV941_18960 SM01009 AlkA N-terminal domain AV941_18990 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AV941_18990 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AV941_19040 SM00965 Secretin and TonB N terminus short domain AV941_19100 SM00670 Large family of predicted nucleotide-binding domains AV941_19125 SM00883 Chaperonin 10 Kd subunit AV941_19160 SM00878 Biotin carboxylase C-terminal domain AV941_19180 SM00479 AV941_19180 AV941_19180 SM00990 AV941_19180 AV941_19210 SM00062 Bacterial periplasmic substrate-binding proteins AV941_19230 SM00798 AICARFT/IMPCHase bienzyme AV941_19230 SM00851 MGS-like domain AV941_19240 SM01209 AV941_19240 AV941_19240 SM01210 AV941_19240 AV941_19245 SM00047 Lysozyme subfamily 2 AV941_19270 SM00448 cheY-homologous receiver domain AV941_19270 SM00862 Transcriptional regulatory protein, C terminal AV941_19275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV941_19275 SM00387 Histidine kinase-like ATPases AV941_19275 SM00388 His Kinase A (phosphoacceptor) domain AV941_19300 SM00363 S4 RNA-binding domain AV941_19315 SM00382 ATPases associated with a variety of cellular activities AV941_19395 SM00867 YceI-like domain AV941_19430 SM00382 ATPases associated with a variety of cellular activities AV941_19450 SM00320 WD40 repeats AV941_19470 SM00316 Ribosomal protein S1-like RNA-binding domain AV941_19470 SM00732 Likely ribonuclease with RNase H fold. AV941_19480 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AV941_19495 SM00342 helix_turn_helix, arabinose operon control protein AV941_19515 SM00633 Glycosyl hydrolase family 10 AV941_19525 SM00861 Transketolase, pyrimidine binding domain AV941_19565 SM00710 Parallel beta-helix repeats AV941_19575 SM00813 Alpha-L-arabinofuranosidase C-terminus AV941_19610 SM00631 AV941_19610 AV941_19705 SM00563 Phosphate acyltransferases AV941_19725 SM00382 ATPases associated with a variety of cellular activities AV941_19790 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AV941_19890 SM00530 Helix-turn-helix XRE-family like proteins AV941_19900 SM00530 Helix-turn-helix XRE-family like proteins AV941_19905 SM00487 DEAD-like helicases superfamily AV941_19915 SM00487 DEAD-like helicases superfamily AV941_19915 SM00490 helicase superfamily c-terminal domain AV941_19930 SM00487 DEAD-like helicases superfamily AV941_19955 SM00422 helix_turn_helix, mercury resistance AV941_19985 SM00028 Tetratricopeptide repeats AV941_19990 SM00849 Metallo-beta-lactamase superfamily AV941_20000 SM00421 helix_turn_helix, Lux Regulon AV941_20030 SM00327 von Willebrand factor (vWF) type A domain AV941_20035 SM00327 von Willebrand factor (vWF) type A domain AV941_20090 SM00342 helix_turn_helix, arabinose operon control protein AV941_20140 SM00354 helix_turn _helix lactose operon repressor AV941_20155 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV941_20165 SM01144 AV941_20165 AV941_20185 SM00382 ATPases associated with a variety of cellular activities AV941_20225 SM00470 ParB-like nuclease domain AV941_20240 SM01228 AV941_20240 AV941_20350 SM00530 Helix-turn-helix XRE-family like proteins AV941_20375 SM00470 ParB-like nuclease domain AV941_20610 SM00974 AV941_20610 AV941_20795 SM00465 GIY-YIG type nucleases (URI domain) AV941_20825 SM00382 ATPases associated with a variety of cellular activities AV941_20950 SM00857 Resolvase, N terminal domain AV941_20985 SM00530 Helix-turn-helix XRE-family like proteins AV941_20995 SM00487 DEAD-like helicases superfamily AV941_21145 SM00382 ATPases associated with a variety of cellular activities AV941_21165 SM00923 MbtH-like protein AV941_21170 SM00823 Phosphopantetheine attachment site AV941_21200 SM00822 AV941_21200 AV941_21200 SM00825 Beta-ketoacyl synthase AV941_21205 SM00823 Phosphopantetheine attachment site AV941_21230 SM00823 Phosphopantetheine attachment site AV941_21410 SM00382 ATPases associated with a variety of cellular activities AV941_21420 SM00052 Putative diguanylate phosphodiesterase AV941_21435 SM00267 diguanylate cyclase AV941_21455 SM01126 AV941_21455 AV941_21525 SM00470 ParB-like nuclease domain AV941_21540 SM00530 Helix-turn-helix XRE-family like proteins