AV942_00005 SM00382 ATPases associated with a variety of cellular activities AV942_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AV942_00010 SM00480 DNA polymerase III beta subunit AV942_00020 SM00387 Histidine kinase-like ATPases AV942_00020 SM00433 TopoisomeraseII AV942_00030 SM00836 DALR anticodon binding domain AV942_00070 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AV942_00070 SM00474 3'-5' exonuclease AV942_00070 SM00475 5'-3' exonuclease AV942_00070 SM00482 DNA polymerase A domain AV942_00105 SM00257 Lysin motif AV942_00195 SM00481 DNA polymerase alpha chain like domain AV942_00285 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AV942_00285 SM01232 AV942_00285 AV942_00315 SM00052 Putative diguanylate phosphodiesterase AV942_00315 SM00267 diguanylate cyclase AV942_00325 SM00829 Enoylreductase AV942_00330 SM00450 Rhodanese Homology Domain AV942_00360 SM00530 Helix-turn-helix XRE-family like proteins AV942_00375 SM00052 Putative diguanylate phosphodiesterase AV942_00375 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV942_00375 SM00267 diguanylate cyclase AV942_00395 SM00530 Helix-turn-helix XRE-family like proteins AV942_00425 SM00849 Metallo-beta-lactamase superfamily AV942_00450 SM00382 ATPases associated with a variety of cellular activities AV942_00455 SM00382 ATPases associated with a variety of cellular activities AV942_00475 SM00450 Rhodanese Homology Domain AV942_00480 SM00849 Metallo-beta-lactamase superfamily AV942_00500 SM00421 helix_turn_helix, Lux Regulon AV942_00560 SM00490 helicase superfamily c-terminal domain AV942_00575 SM00487 DEAD-like helicases superfamily AV942_00590 SM00382 ATPases associated with a variety of cellular activities AV942_00620 SM00849 Metallo-beta-lactamase superfamily AV942_00645 SM00876 Biotin and Thiamin Synthesis associated domain AV942_00695 SM00267 diguanylate cyclase AV942_00705 SM00072 Guanylate kinase homologues. AV942_00710 SM01409 AV942_00710 AV942_00715 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV942_00715 SM00954 Region found in RelA / SpoT proteins AV942_00730 SM00487 DEAD-like helicases superfamily AV942_00730 SM00490 helicase superfamily c-terminal domain AV942_00760 SM00382 ATPases associated with a variety of cellular activities AV942_00825 SM00422 helix_turn_helix, mercury resistance AV942_00850 SM00052 Putative diguanylate phosphodiesterase AV942_00850 SM01034 Sensors of blue-light using FAD AV942_00875 SM00271 DnaJ molecular chaperone homology domain AV942_00915 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV942_00935 SM00052 Putative diguanylate phosphodiesterase AV942_00935 SM00267 diguanylate cyclase AV942_00950 SM00341 Helicase and RNase D C-terminal AV942_00950 SM00487 DEAD-like helicases superfamily AV942_00950 SM00490 helicase superfamily c-terminal domain AV942_00950 SM00956 AV942_00950 AV942_00955 SM00924 MgtE intracellular N domain AV942_00965 SM00267 diguanylate cyclase AV942_00965 SM00448 cheY-homologous receiver domain AV942_00975 SM00971 Serine acetyltransferase, N-terminal AV942_01015 SM00014 Acid phosphatase homologues AV942_01055 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV942_01095 SM00354 helix_turn _helix lactose operon repressor AV942_01160 SM00420 helix_turn_helix, Deoxyribose operon repressor AV942_01160 SM01134 AV942_01160 AV942_01200 SM00965 Secretin and TonB N terminus short domain AV942_01210 SM00028 Tetratricopeptide repeats AV942_01215 SM00382 ATPases associated with a variety of cellular activities AV942_01285 SM00316 Ribosomal protein S1-like RNA-binding domain AV942_01315 SM01038 Beta galactosidase small chain AV942_01320 SM00448 cheY-homologous receiver domain AV942_01320 SM00862 Transcriptional regulatory protein, C terminal AV942_01325 SM00387 Histidine kinase-like ATPases AV942_01350 SM00478 endonuclease III AV942_01350 SM00525 AV942_01350 AV942_01370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV942_01370 SM00387 Histidine kinase-like ATPases AV942_01370 SM00388 His Kinase A (phosphoacceptor) domain AV942_01375 SM00448 cheY-homologous receiver domain AV942_01375 SM00862 Transcriptional regulatory protein, C terminal AV942_01540 SM00422 helix_turn_helix, mercury resistance AV942_01655 SM00448 cheY-homologous receiver domain AV942_01655 SM00862 Transcriptional regulatory protein, C terminal AV942_01660 SM00387 Histidine kinase-like ATPases AV942_01695 SM00422 helix_turn_helix, mercury resistance AV942_01805 SM00354 helix_turn _helix lactose operon repressor AV942_01820 SM00267 diguanylate cyclase AV942_01835 SM00342 helix_turn_helix, arabinose operon control protein AV942_01835 SM00387 Histidine kinase-like ATPases AV942_01835 SM00388 His Kinase A (phosphoacceptor) domain AV942_01835 SM00448 cheY-homologous receiver domain AV942_01850 SM00354 helix_turn _helix lactose operon repressor AV942_01925 SM00855 Phosphoglycerate mutase family AV942_01940 SM00671 Sel1-like repeats. AV942_01945 SM00382 ATPases associated with a variety of cellular activities AV942_01950 SM01403 AV942_01950 AV942_01970 SM01382 AV942_01970 AV942_01970 SM01383 AV942_01970 AV942_01985 SM00322 K homology RNA-binding domain AV942_02035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV942_02035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV942_02060 SM00487 DEAD-like helicases superfamily AV942_02060 SM00490 helicase superfamily c-terminal domain AV942_02085 SM00342 helix_turn_helix, arabinose operon control protein AV942_02095 SM00938 Nitrogen regulatory protein P-II AV942_02115 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AV942_02150 SM00073 Histidine Phosphotransfer domain AV942_02150 SM00387 Histidine kinase-like ATPases AV942_02150 SM00388 His Kinase A (phosphoacceptor) domain AV942_02150 SM00448 cheY-homologous receiver domain AV942_02155 SM00434 DNA Topoisomerase IV AV942_02165 SM00052 Putative diguanylate phosphodiesterase AV942_02165 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV942_02165 SM00091 PAS domain AV942_02165 SM00267 diguanylate cyclase AV942_02170 SM01150 AV942_02170 AV942_02245 SM00965 Secretin and TonB N terminus short domain AV942_02265 SM00842 Cell division protein FtsA AV942_02275 SM00919 Malic enzyme, NAD binding domain AV942_02275 SM01274 AV942_02275 AV942_02295 SM01060 AV942_02295 AV942_02310 SM00052 Putative diguanylate phosphodiesterase AV942_02340 SM00859 Semialdehyde dehydrogenase, NAD binding domain AV942_02345 SM00851 MGS-like domain AV942_02355 SM00448 cheY-homologous receiver domain AV942_02355 SM00862 Transcriptional regulatory protein, C terminal AV942_02360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV942_02360 SM00387 Histidine kinase-like ATPases AV942_02360 SM00388 His Kinase A (phosphoacceptor) domain AV942_02395 SM00450 Rhodanese Homology Domain AV942_02435 SM00479 AV942_02435 AV942_02505 SM00267 diguanylate cyclase AV942_02510 SM01004 Delta-aminolevulinic acid dehydratase AV942_02520 SM00487 DEAD-like helicases superfamily AV942_02520 SM00490 helicase superfamily c-terminal domain AV942_02530 SM00357 Cold shock protein domain AV942_02530 SM00382 ATPases associated with a variety of cellular activities AV942_02530 SM00959 Rho termination factor, N-terminal domain AV942_02540 SM00387 Histidine kinase-like ATPases AV942_02540 SM00388 His Kinase A (phosphoacceptor) domain AV942_02540 SM00448 cheY-homologous receiver domain AV942_02550 SM01001 AIR carboxylase AV942_02610 SM00788 Adenylosuccinate synthetase AV942_02660 SM01005 Alanine racemase, C-terminal domain AV942_02685 SM00062 Bacterial periplasmic substrate-binding proteins AV942_02715 SM00670 Large family of predicted nucleotide-binding domains AV942_02735 SM00530 Helix-turn-helix XRE-family like proteins AV942_02895 SM00257 Lysin motif AV942_02935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV942_02935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV942_02935 SM01049 AV942_02935 AV942_02950 SM00287 Bacterial SH3 domain homologues AV942_02955 SM01118 AV942_02955 AV942_02965 SM00927 DNA mismatch repair enzyme MutH AV942_02975 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV942_02995 SM00448 cheY-homologous receiver domain AV942_03000 SM00267 diguanylate cyclase AV942_03025 SM00487 DEAD-like helicases superfamily AV942_03025 SM00490 helicase superfamily c-terminal domain AV942_03035 SM00670 Large family of predicted nucleotide-binding domains AV942_03050 SM00487 DEAD-like helicases superfamily AV942_03050 SM00490 helicase superfamily c-terminal domain AV942_03055 SM00028 Tetratricopeptide repeats AV942_03090 SM00387 Histidine kinase-like ATPases AV942_03090 SM00433 TopoisomeraseII AV942_03130 SM00841 Elongation factor P, C-terminal AV942_03130 SM01185 AV942_03130 AV942_03185 SM00014 Acid phosphatase homologues AV942_03195 SM01012 AV942_03195 AV942_03225 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AV942_03240 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV942_03240 SM00091 PAS domain AV942_03240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV942_03255 SM00382 ATPases associated with a variety of cellular activities AV942_03315 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AV942_03320 SM01007 Class II Aldolase and Adducin N-terminal domain AV942_03350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV942_03350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV942_03360 SM00400 zinc finger AV942_03360 SM00493 AV942_03360 AV942_03360 SM00766 DNA primase DnaG DnaB-binding AV942_03385 SM01207 AV942_03385 AV942_03390 SM00905 Dihydroneopterin aldolase AV942_03425 SM00530 Helix-turn-helix XRE-family like proteins AV942_03435 SM00387 Histidine kinase-like ATPases AV942_03440 SM00448 cheY-homologous receiver domain AV942_03440 SM00862 Transcriptional regulatory protein, C terminal AV942_03445 SM00387 Histidine kinase-like ATPases AV942_03445 SM00388 His Kinase A (phosphoacceptor) domain AV942_03455 SM00710 Parallel beta-helix repeats AV942_03490 SM00028 Tetratricopeptide repeats AV942_03495 SM00448 cheY-homologous receiver domain AV942_03495 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV942_03500 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV942_03500 SM00091 PAS domain AV942_03500 SM00387 Histidine kinase-like ATPases AV942_03500 SM00388 His Kinase A (phosphoacceptor) domain AV942_03500 SM00448 cheY-homologous receiver domain AV942_03555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV942_03555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV942_03570 SM00650 Ribosomal RNA adenine dimethylases AV942_03590 SM00271 DnaJ molecular chaperone homology domain AV942_03635 SM00954 Region found in RelA / SpoT proteins AV942_03665 SM00822 AV942_03665 AV942_03670 SM01236 AV942_03670 AV942_03715 SM00387 Histidine kinase-like ATPases AV942_03715 SM00388 His Kinase A (phosphoacceptor) domain AV942_03720 SM00448 cheY-homologous receiver domain AV942_03720 SM00862 Transcriptional regulatory protein, C terminal AV942_03765 SM00116 Domain in cystathionine beta-synthase and other proteins. AV942_03765 SM00924 MgtE intracellular N domain AV942_03795 SM00382 ATPases associated with a variety of cellular activities AV942_03825 SM00382 ATPases associated with a variety of cellular activities AV942_03860 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV942_03865 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV942_03930 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV942_03930 SM00091 PAS domain AV942_03930 SM00387 Histidine kinase-like ATPases AV942_03930 SM00388 His Kinase A (phosphoacceptor) domain AV942_03930 SM00448 cheY-homologous receiver domain AV942_03955 SM00861 Transketolase, pyrimidine binding domain AV942_03960 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV942_04025 SM00382 ATPases associated with a variety of cellular activities AV942_04060 SM00347 helix_turn_helix multiple antibiotic resistance protein AV942_04070 SM01263 AV942_04070 AV942_04095 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV942_04095 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV942_04135 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV942_04135 SM00866 AV942_04135 AV942_04170 SM00382 ATPases associated with a variety of cellular activities AV942_04350 SM00382 ATPases associated with a variety of cellular activities AV942_04375 SM00487 DEAD-like helicases superfamily AV942_04415 SM00850 LytTr DNA-binding domain AV942_04430 SM00448 cheY-homologous receiver domain AV942_04435 SM00091 PAS domain AV942_04455 SM00729 Elongator protein 3, MiaB family, Radical SAM AV942_04465 SM00487 DEAD-like helicases superfamily AV942_04465 SM00490 helicase superfamily c-terminal domain AV942_04475 SM00382 ATPases associated with a variety of cellular activities AV942_04485 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV942_04500 SM01329 AV942_04500 AV942_04505 SM00917 LeuA allosteric (dimerisation) domain AV942_04515 SM01192 AV942_04515 AV942_04515 SM01193 AV942_04515 AV942_04525 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AV942_04525 SM00534 ATPase domain of DNA mismatch repair MUTS family AV942_04535 SM00382 ATPases associated with a variety of cellular activities AV942_04540 SM00382 ATPases associated with a variety of cellular activities AV942_04560 SM00382 ATPases associated with a variety of cellular activities AV942_04630 SM00382 ATPases associated with a variety of cellular activities AV942_04670 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV942_04675 SM01329 AV942_04675 AV942_04695 SM00267 diguanylate cyclase AV942_04755 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV942_04800 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV942_04810 SM00935 Outer membrane protein (OmpH-like) AV942_04835 SM00481 DNA polymerase alpha chain like domain AV942_04845 SM00977 TilS substrate C-terminal domain AV942_04850 SM00267 diguanylate cyclase AV942_04870 SM00062 Bacterial periplasmic substrate-binding proteins AV942_04875 SM01211 AV942_04875 AV942_04915 SM00421 helix_turn_helix, Lux Regulon AV942_04945 SM00858 AV942_04945 AV942_04950 SM00260 Two component signalling adaptor domain AV942_04950 SM00448 cheY-homologous receiver domain AV942_04955 SM00138 Methyltransferase, chemotaxis proteins AV942_05000 SM00047 Lysozyme subfamily 2 AV942_05075 SM00858 AV942_05075 AV942_05090 SM00822 AV942_05090 AV942_05170 SM00382 ATPases associated with a variety of cellular activities AV942_05175 SM00387 Histidine kinase-like ATPases AV942_05175 SM00388 His Kinase A (phosphoacceptor) domain AV942_05180 SM00382 ATPases associated with a variety of cellular activities AV942_05180 SM00448 cheY-homologous receiver domain AV942_05205 SM00382 ATPases associated with a variety of cellular activities AV942_05265 SM00382 ATPases associated with a variety of cellular activities AV942_05265 SM00962 SRP54-type protein, GTPase domain AV942_05280 SM00448 cheY-homologous receiver domain AV942_05290 SM00073 Histidine Phosphotransfer domain AV942_05290 SM00260 Two component signalling adaptor domain AV942_05290 SM00387 Histidine kinase-like ATPases AV942_05290 SM01231 AV942_05290 AV942_05295 SM00448 cheY-homologous receiver domain AV942_05305 SM00260 Two component signalling adaptor domain AV942_05310 SM00260 Two component signalling adaptor domain AV942_05330 SM01018 B12 binding domain AV942_05355 SM00947 Carbonic anhydrase AV942_05390 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AV942_05430 SM00382 ATPases associated with a variety of cellular activities AV942_05435 SM00382 ATPases associated with a variety of cellular activities AV942_05455 SM00382 ATPases associated with a variety of cellular activities AV942_05480 SM00091 PAS domain AV942_05480 SM00382 ATPases associated with a variety of cellular activities AV942_05495 SM00344 helix_turn_helix ASNC type AV942_05500 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AV942_05530 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV942_05545 SM00028 Tetratricopeptide repeats AV942_05580 SM00028 Tetratricopeptide repeats AV942_05660 SM00829 Enoylreductase AV942_05675 SM00347 helix_turn_helix multiple antibiotic resistance protein AV942_05685 SM00530 Helix-turn-helix XRE-family like proteins AV942_05740 SM00479 AV942_05740 AV942_05805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV942_05835 SM00422 helix_turn_helix, mercury resistance AV942_05850 SM00422 helix_turn_helix, mercury resistance AV942_05855 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AV942_05965 SM00382 ATPases associated with a variety of cellular activities AV942_06000 SM00382 ATPases associated with a variety of cellular activities AV942_06020 SM00327 von Willebrand factor (vWF) type A domain AV942_06035 SM00778 Zinc-binding domain of primase-helicase AV942_06105 SM00530 Helix-turn-helix XRE-family like proteins AV942_06115 SM00836 DALR anticodon binding domain AV942_06115 SM01016 Arginyl tRNA synthetase N terminal dom AV942_06145 SM00267 diguanylate cyclase AV942_06180 SM00937 AV942_06180 AV942_06230 SM00463 Small MutS-related domain AV942_06260 SM00763 PrkA AAA domain AV942_06290 SM00965 Secretin and TonB N terminus short domain AV942_06305 SM00479 AV942_06305 AV942_06325 SM00357 Cold shock protein domain AV942_06340 SM00478 endonuclease III AV942_06350 SM00900 AV942_06350 AV942_06390 SM00487 DEAD-like helicases superfamily AV942_06390 SM00490 helicase superfamily c-terminal domain AV942_06470 SM00267 diguanylate cyclase AV942_06495 SM00028 Tetratricopeptide repeats AV942_06500 SM00327 von Willebrand factor (vWF) type A domain AV942_06535 SM00052 Putative diguanylate phosphodiesterase AV942_06535 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV942_06535 SM00091 PAS domain AV942_06535 SM00267 diguanylate cyclase AV942_06545 SM00855 Phosphoglycerate mutase family AV942_06555 SM01091 Transporter associated domain AV942_06565 SM00382 ATPases associated with a variety of cellular activities AV942_06565 SM00962 SRP54-type protein, GTPase domain AV942_06565 SM00963 SRP54-type protein, helical bundle domain AV942_06615 SM00382 ATPases associated with a variety of cellular activities AV942_06665 SM00830 Chorismate mutase type II AV942_06670 SM00830 Chorismate mutase type II AV942_06675 SM00448 cheY-homologous receiver domain AV942_06690 SM00331 Sigma factor PP2C-like phosphatases AV942_06690 SM00448 cheY-homologous receiver domain AV942_06700 SM00052 Putative diguanylate phosphodiesterase AV942_06700 SM00267 diguanylate cyclase AV942_06710 SM00387 Histidine kinase-like ATPases AV942_06710 SM00388 His Kinase A (phosphoacceptor) domain AV942_06720 SM00382 ATPases associated with a variety of cellular activities AV942_06720 SM00448 cheY-homologous receiver domain AV942_06755 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV942_06760 SM00382 ATPases associated with a variety of cellular activities AV942_06835 SM00857 Resolvase, N terminal domain AV942_06865 SM00028 Tetratricopeptide repeats AV942_06865 SM00387 Histidine kinase-like ATPases AV942_06865 SM00388 His Kinase A (phosphoacceptor) domain AV942_06865 SM00448 cheY-homologous receiver domain AV942_06875 SM00859 Semialdehyde dehydrogenase, NAD binding domain AV942_06890 SM00267 diguanylate cyclase AV942_06915 SM00116 Domain in cystathionine beta-synthase and other proteins. AV942_06955 SM00267 diguanylate cyclase AV942_07025 SM00729 Elongator protein 3, MiaB family, Radical SAM AV942_07025 SM00876 Biotin and Thiamin Synthesis associated domain AV942_07050 SM00226 Low molecular weight phosphatase family AV942_07060 SM00382 ATPases associated with a variety of cellular activities AV942_07080 SM00382 ATPases associated with a variety of cellular activities AV942_07085 SM00729 Elongator protein 3, MiaB family, Radical SAM AV942_07095 SM00028 Tetratricopeptide repeats AV942_07095 SM00448 cheY-homologous receiver domain AV942_07165 SM01321 AV942_07165 AV942_07180 SM00382 ATPases associated with a variety of cellular activities AV942_07195 SM00905 Dihydroneopterin aldolase AV942_07205 SM00387 Histidine kinase-like ATPases AV942_07210 SM00448 cheY-homologous receiver domain AV942_07210 SM00862 Transcriptional regulatory protein, C terminal AV942_07260 SM00481 DNA polymerase alpha chain like domain AV942_07280 SM00363 S4 RNA-binding domain AV942_07290 SM01266 AV942_07290 AV942_07315 SM00382 ATPases associated with a variety of cellular activities AV942_07380 SM00421 helix_turn_helix, Lux Regulon AV942_07380 SM00448 cheY-homologous receiver domain AV942_07385 SM00387 Histidine kinase-like ATPases AV942_07385 SM00388 His Kinase A (phosphoacceptor) domain AV942_07385 SM00448 cheY-homologous receiver domain AV942_07400 SM00271 DnaJ molecular chaperone homology domain AV942_07410 SM00052 Putative diguanylate phosphodiesterase AV942_07410 SM00091 PAS domain AV942_07410 SM00267 diguanylate cyclase AV942_07430 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AV942_07435 SM00851 MGS-like domain AV942_07435 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AV942_07485 SM00116 Domain in cystathionine beta-synthase and other proteins. AV942_07485 SM01091 Transporter associated domain AV942_07500 SM00729 Elongator protein 3, MiaB family, Radical SAM AV942_07540 SM00903 Flavin reductase like domain AV942_07615 SM00829 Enoylreductase AV942_07630 SM01400 AV942_07630 AV942_07655 SM00937 AV942_07655 AV942_07705 SM00838 Elongation factor G C-terminus AV942_07705 SM00889 Elongation factor G, domain IV AV942_07720 SM00219 Tyrosine kinase, catalytic domain AV942_07720 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AV942_07730 SM00460 Transglutaminase/protease-like homologues AV942_07760 SM00052 Putative diguanylate phosphodiesterase AV942_07760 SM00267 diguanylate cyclase AV942_07830 SM00347 helix_turn_helix multiple antibiotic resistance protein AV942_07845 SM00864 Tubulin/FtsZ family, GTPase domain AV942_07845 SM00865 Tubulin/FtsZ family, C-terminal domain AV942_07855 SM00052 Putative diguanylate phosphodiesterase AV942_07855 SM00091 PAS domain AV942_07855 SM00267 diguanylate cyclase AV942_07860 SM00052 Putative diguanylate phosphodiesterase AV942_07860 SM00267 diguanylate cyclase AV942_07890 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV942_07905 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV942_07905 SM00091 PAS domain AV942_07905 SM00267 diguanylate cyclase AV942_07935 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV942_07940 SM01092 CO dehydrogenase flavoprotein C-terminal domain AV942_07980 SM00448 cheY-homologous receiver domain AV942_07990 SM00267 diguanylate cyclase AV942_07990 SM00448 cheY-homologous receiver domain AV942_07995 SM00387 Histidine kinase-like ATPases AV942_07995 SM00388 His Kinase A (phosphoacceptor) domain AV942_07995 SM00448 cheY-homologous receiver domain AV942_08080 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AV942_08150 SM00052 Putative diguanylate phosphodiesterase AV942_08150 SM00267 diguanylate cyclase AV942_08230 SM00873 B3/4 domain AV942_08230 SM00874 tRNA synthetase B5 domain AV942_08230 SM00896 Ferredoxin-fold anticodon binding domain AV942_08235 SM00411 bacterial (prokaryotic) histone like domain AV942_08270 SM00487 DEAD-like helicases superfamily AV942_08270 SM00490 helicase superfamily c-terminal domain AV942_08270 SM00982 AV942_08270 AV942_08270 SM01058 CarD-like/TRCF domain AV942_08290 SM00387 Histidine kinase-like ATPases AV942_08295 SM00897 FIST N domain AV942_08295 SM01204 AV942_08295 AV942_08375 SM00878 Biotin carboxylase C-terminal domain AV942_08395 SM00422 helix_turn_helix, mercury resistance AV942_08415 SM00062 Bacterial periplasmic substrate-binding proteins AV942_08415 SM00267 diguanylate cyclase AV942_08470 SM00843 AV942_08470 AV942_08510 SM00421 helix_turn_helix, Lux Regulon AV942_08525 SM01040 BRO family, N-terminal domain AV942_08785 SM00387 Histidine kinase-like ATPases AV942_08785 SM00388 His Kinase A (phosphoacceptor) domain AV942_08785 SM00448 cheY-homologous receiver domain AV942_08795 SM00116 Domain in cystathionine beta-synthase and other proteins. AV942_08815 SM00267 diguanylate cyclase AV942_08820 SM00342 helix_turn_helix, arabinose operon control protein AV942_08830 SM00382 ATPases associated with a variety of cellular activities AV942_08830 SM00487 DEAD-like helicases superfamily AV942_08830 SM00490 helicase superfamily c-terminal domain AV942_08830 SM00847 Helicase associated domain (HA2) Add an annotation AV942_08845 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AV942_08850 SM00829 Enoylreductase AV942_08860 SM00479 AV942_08860 AV942_08890 SM00052 Putative diguanylate phosphodiesterase AV942_08895 SM00382 ATPases associated with a variety of cellular activities AV942_08910 SM00634 Bacterial Ig-like domain (group 1) AV942_08925 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AV942_08925 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AV942_08925 SM00493 AV942_08925 AV942_08965 SM00587 ZnF_C4 abd HLH domain containing kinases domain AV942_08970 SM00316 Ribosomal protein S1-like RNA-binding domain AV942_08975 SM00363 S4 RNA-binding domain AV942_09010 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AV942_09015 SM00822 AV942_09015 AV942_09025 SM00825 Beta-ketoacyl synthase AV942_09065 SM00267 diguanylate cyclase AV942_09180 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV942_09180 SM00091 PAS domain AV942_09180 SM00387 Histidine kinase-like ATPases AV942_09180 SM00388 His Kinase A (phosphoacceptor) domain AV942_09180 SM00448 cheY-homologous receiver domain AV942_09185 SM00448 cheY-homologous receiver domain AV942_09185 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV942_09195 SM00316 Ribosomal protein S1-like RNA-binding domain AV942_09220 SM01387 AV942_09220 AV942_09225 SM00363 S4 RNA-binding domain AV942_09240 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV942_09245 SM00448 cheY-homologous receiver domain AV942_09310 SM00729 Elongator protein 3, MiaB family, Radical SAM AV942_09350 SM00382 ATPases associated with a variety of cellular activities AV942_09380 SM00267 diguanylate cyclase AV942_09400 SM00857 Resolvase, N terminal domain AV942_09480 SM00347 helix_turn_helix multiple antibiotic resistance protein AV942_09495 SM00028 Tetratricopeptide repeats AV942_09520 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV942_09545 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AV942_09550 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AV942_09580 SM00357 Cold shock protein domain AV942_09590 SM00382 ATPases associated with a variety of cellular activities AV942_09590 SM01086 C-terminal, D2-small domain, of ClpB protein AV942_09595 SM00316 Ribosomal protein S1-like RNA-binding domain AV942_09620 SM00731 SprT homologues. AV942_09650 SM00870 AV942_09650 AV942_09655 SM00729 Elongator protein 3, MiaB family, Radical SAM AV942_09670 SM00936 Penicillin-binding protein 5, C-terminal domain AV942_09740 SM00267 diguanylate cyclase AV942_09750 SM01103 AV942_09750 AV942_09760 SM00382 ATPases associated with a variety of cellular activities AV942_09790 SM00052 Putative diguanylate phosphodiesterase AV942_09790 SM00267 diguanylate cyclase AV942_09790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV942_09800 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AV942_09805 SM00046 Diacylglycerol kinase catalytic domain (presumed) AV942_09805 SM00195 Dual specificity phosphatase, catalytic domain AV942_09805 SM00404 Protein tyrosine phosphatase, catalytic domain motif AV942_09855 SM00507 HNH nucleases AV942_09860 SM00316 Ribosomal protein S1-like RNA-binding domain AV942_09860 SM00322 K homology RNA-binding domain AV942_09890 SM01321 AV942_09890 AV942_09905 SM00382 ATPases associated with a variety of cellular activities AV942_10020 SM00028 Tetratricopeptide repeats AV942_10040 SM00771 ZipA, C-terminal domain (FtsZ-binding) AV942_10045 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV942_10045 SM00292 breast cancer carboxy-terminal domain AV942_10045 SM00532 Ligase N family AV942_10055 SM00849 Metallo-beta-lactamase superfamily AV942_10060 SM00382 ATPases associated with a variety of cellular activities AV942_10085 SM00729 Elongator protein 3, MiaB family, Radical SAM AV942_10150 SM00861 Transketolase, pyrimidine binding domain AV942_10165 SM00881 CoA binding domain AV942_10205 SM00642 Alpha-amylase domain AV942_10210 SM00642 Alpha-amylase domain AV942_10220 SM00642 Alpha-amylase domain AV942_10225 SM00354 helix_turn _helix lactose operon repressor AV942_10340 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV942_10355 SM00387 Histidine kinase-like ATPases AV942_10360 SM00448 cheY-homologous receiver domain AV942_10360 SM00850 LytTr DNA-binding domain AV942_10380 SM00450 Rhodanese Homology Domain AV942_10380 SM00849 Metallo-beta-lactamase superfamily AV942_10395 SM00028 Tetratricopeptide repeats AV942_10395 SM00448 cheY-homologous receiver domain AV942_10405 SM00450 Rhodanese Homology Domain AV942_10410 SM00054 EF-hand, calcium binding motif AV942_10415 SM00487 DEAD-like helicases superfamily AV942_10415 SM00490 helicase superfamily c-terminal domain AV942_10420 SM00882 Coenzyme A transferase AV942_10425 SM00882 Coenzyme A transferase AV942_10440 SM00387 Histidine kinase-like ATPases AV942_10490 SM00861 Transketolase, pyrimidine binding domain AV942_10505 SM00220 Serine/Threonine protein kinases, catalytic domain AV942_10540 SM00945 ProQ/FINO family AV942_10545 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV942_10545 SM00245 tail specific protease AV942_10600 SM00981 AV942_10600 AV942_10610 SM00382 ATPases associated with a variety of cellular activities AV942_10750 SM00100 Cyclic nucleotide-monophosphate binding domain AV942_10750 SM00419 helix_turn_helix, cAMP Regulatory protein AV942_10775 SM00047 Lysozyme subfamily 2 AV942_10795 SM00450 Rhodanese Homology Domain AV942_10805 SM01144 AV942_10805 AV942_10830 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV942_10830 SM00465 GIY-YIG type nucleases (URI domain) AV942_10835 SM00421 helix_turn_helix, Lux Regulon AV942_10835 SM00448 cheY-homologous receiver domain AV942_10930 SM00382 ATPases associated with a variety of cellular activities AV942_10940 SM00843 AV942_10940 AV942_10945 SM00344 helix_turn_helix ASNC type AV942_10950 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AV942_10950 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AV942_10955 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AV942_10975 SM00411 bacterial (prokaryotic) histone like domain AV942_10980 SM00316 Ribosomal protein S1-like RNA-binding domain AV942_11000 SM00434 DNA Topoisomerase IV AV942_11035 SM00052 Putative diguanylate phosphodiesterase AV942_11035 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV942_11035 SM00267 diguanylate cyclase AV942_11055 SM01130 AV942_11055 AV942_11135 SM00421 helix_turn_helix, Lux Regulon AV942_11135 SM00448 cheY-homologous receiver domain AV942_11165 SM00642 Alpha-amylase domain AV942_11175 SM00852 Probable molybdopterin binding domain AV942_11195 SM00382 ATPases associated with a variety of cellular activities AV942_11235 SM00530 Helix-turn-helix XRE-family like proteins AV942_11305 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AV942_11315 SM00563 Phosphate acyltransferases AV942_11355 SM00342 helix_turn_helix, arabinose operon control protein AV942_11390 SM00893 Electron transfer flavoprotein domain AV942_11395 SM00893 Electron transfer flavoprotein domain AV942_11405 SM00528 Domain in histone-like proteins of HNS family AV942_11425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV942_11425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV942_11440 SM00797 Allophanate hydrolase subunit 2 AV942_11445 SM00796 Allophanate hydrolase subunit 1 AV942_11500 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV942_11545 SM00342 helix_turn_helix, arabinose operon control protein AV942_11560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV942_11590 SM00829 Enoylreductase AV942_11605 SM00855 Phosphoglycerate mutase family AV942_11630 SM00729 Elongator protein 3, MiaB family, Radical SAM AV942_11635 SM00382 ATPases associated with a variety of cellular activities AV942_11665 SM00852 Probable molybdopterin binding domain AV942_11785 SM00052 Putative diguanylate phosphodiesterase AV942_11785 SM00267 diguanylate cyclase AV942_11790 SM00849 Metallo-beta-lactamase superfamily AV942_11820 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AV942_11825 SM00450 Rhodanese Homology Domain AV942_11840 SM00382 ATPases associated with a variety of cellular activities AV942_11840 SM00448 cheY-homologous receiver domain AV942_11850 SM00387 Histidine kinase-like ATPases AV942_11850 SM00388 His Kinase A (phosphoacceptor) domain AV942_11855 SM00448 cheY-homologous receiver domain AV942_11860 SM00387 Histidine kinase-like ATPases AV942_11860 SM00388 His Kinase A (phosphoacceptor) domain AV942_11860 SM00448 cheY-homologous receiver domain AV942_11925 SM00631 AV942_11925 AV942_11930 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV942_11945 SM01350 AV942_11945 AV942_11950 SM00642 Alpha-amylase domain AV942_11955 SM00642 Alpha-amylase domain AV942_11965 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV942_12015 SM00342 helix_turn_helix, arabinose operon control protein AV942_12025 SM00893 Electron transfer flavoprotein domain AV942_12030 SM00893 Electron transfer flavoprotein domain AV942_12100 SM00749 bacterial OsmY and nodulation domain AV942_12165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV942_12165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV942_12190 SM00052 Putative diguanylate phosphodiesterase AV942_12190 SM00267 diguanylate cyclase AV942_12200 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV942_12205 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV942_12205 SM00387 Histidine kinase-like ATPases AV942_12315 SM00849 Metallo-beta-lactamase superfamily AV942_12320 SM00257 Lysin motif AV942_12345 SM00840 AV942_12345 AV942_12365 SM00244 prohibitin homologues AV942_12375 SM00642 Alpha-amylase domain AV942_12385 SM00829 Enoylreductase AV942_12390 SM01060 AV942_12390 AV942_12395 SM00829 Enoylreductase AV942_12410 SM00539 Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins. AV942_12470 SM00859 Semialdehyde dehydrogenase, NAD binding domain AV942_12480 SM01007 Class II Aldolase and Adducin N-terminal domain AV942_12485 SM00100 Cyclic nucleotide-monophosphate binding domain AV942_12485 SM00419 helix_turn_helix, cAMP Regulatory protein AV942_12505 SM00825 Beta-ketoacyl synthase AV942_12555 SM00422 helix_turn_helix, mercury resistance AV942_12560 SM00829 Enoylreductase AV942_12590 SM00382 ATPases associated with a variety of cellular activities AV942_12600 SM00387 Histidine kinase-like ATPases AV942_12600 SM00388 His Kinase A (phosphoacceptor) domain AV942_12600 SM00448 cheY-homologous receiver domain AV942_12720 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV942_12765 SM00341 Helicase and RNase D C-terminal AV942_12765 SM00474 3'-5' exonuclease AV942_12795 SM00487 DEAD-like helicases superfamily AV942_12795 SM00488 AV942_12795 AV942_12795 SM00491 AV942_12795 AV942_12805 SM00014 Acid phosphatase homologues AV942_12820 SM00642 Alpha-amylase domain AV942_12940 SM00387 Histidine kinase-like ATPases AV942_12945 SM00493 AV942_12945 AV942_12955 SM00448 cheY-homologous receiver domain AV942_12965 SM00382 ATPases associated with a variety of cellular activities AV942_12990 SM00862 Transcriptional regulatory protein, C terminal AV942_13000 SM00091 PAS domain AV942_13000 SM00267 diguanylate cyclase AV942_13040 SM00028 Tetratricopeptide repeats AV942_13050 SM00382 ATPases associated with a variety of cellular activities AV942_13050 SM01086 C-terminal, D2-small domain, of ClpB protein AV942_13060 SM00363 S4 RNA-binding domain AV942_13130 SM00861 Transketolase, pyrimidine binding domain AV942_13185 SM00382 ATPases associated with a variety of cellular activities AV942_13195 SM00382 ATPases associated with a variety of cellular activities AV942_13230 SM00358 Double-stranded RNA binding motif AV942_13230 SM00535 Ribonuclease III family AV942_13240 SM00838 Elongation factor G C-terminus AV942_13295 SM00938 Nitrogen regulatory protein P-II AV942_13380 SM00904 Riboflavin kinase AV942_13425 SM00563 Phosphate acyltransferases AV942_13440 SM00411 bacterial (prokaryotic) histone like domain AV942_13450 SM00382 ATPases associated with a variety of cellular activities AV942_13450 SM00464 Found in ATP-dependent protease La (LON) AV942_13455 SM00382 ATPases associated with a variety of cellular activities AV942_13455 SM00994 ClpX C4-type zinc finger AV942_13455 SM01086 C-terminal, D2-small domain, of ClpB protein AV942_13535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV942_13545 SM00116 Domain in cystathionine beta-synthase and other proteins. AV942_13545 SM01240 AV942_13545 AV942_13565 SM00382 ATPases associated with a variety of cellular activities AV942_13570 SM00564 beta-propeller repeat AV942_13575 SM00028 Tetratricopeptide repeats AV942_13595 SM00028 Tetratricopeptide repeats AV942_13595 SM00257 Lysin motif AV942_13605 SM00562 AV942_13605 AV942_13635 SM00382 ATPases associated with a variety of cellular activities AV942_13680 SM00850 LytTr DNA-binding domain AV942_13695 SM01323 AV942_13695 AV942_13760 SM00382 ATPases associated with a variety of cellular activities AV942_13780 SM00098 Alkaline phosphatase homologues AV942_13785 SM00260 Two component signalling adaptor domain AV942_13785 SM00448 cheY-homologous receiver domain AV942_13855 SM00028 Tetratricopeptide repeats AV942_13880 SM00984 UDP binding domain AV942_14010 SM00382 ATPases associated with a variety of cellular activities AV942_14070 SM00052 Putative diguanylate phosphodiesterase AV942_14070 SM00267 diguanylate cyclase AV942_14085 SM00354 helix_turn _helix lactose operon repressor AV942_14125 SM00967 RNA 2'-O ribose methyltransferase substrate binding AV942_14200 SM00953 AV942_14200 AV942_14220 SM00448 cheY-homologous receiver domain AV942_14220 SM00862 Transcriptional regulatory protein, C terminal AV942_14225 SM00387 Histidine kinase-like ATPases AV942_14225 SM00388 His Kinase A (phosphoacceptor) domain AV942_14270 SM01092 CO dehydrogenase flavoprotein C-terminal domain AV942_14275 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV942_14320 SM01322 AV942_14320 AV942_14365 SM00487 DEAD-like helicases superfamily AV942_14365 SM00490 helicase superfamily c-terminal domain AV942_14385 SM00028 Tetratricopeptide repeats AV942_14385 SM00387 Histidine kinase-like ATPases AV942_14385 SM00388 His Kinase A (phosphoacceptor) domain AV942_14385 SM00448 cheY-homologous receiver domain AV942_14395 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV942_14395 SM00387 Histidine kinase-like ATPases AV942_14395 SM00388 His Kinase A (phosphoacceptor) domain AV942_14395 SM00448 cheY-homologous receiver domain AV942_14415 SM00448 cheY-homologous receiver domain AV942_14415 SM00862 Transcriptional regulatory protein, C terminal AV942_14420 SM00388 His Kinase A (phosphoacceptor) domain AV942_14430 SM00530 Helix-turn-helix XRE-family like proteins AV942_14435 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AV942_14445 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AV942_14455 SM00244 prohibitin homologues AV942_14475 SM00382 ATPases associated with a variety of cellular activities AV942_14485 SM00696 Repeats found in Drosophila proteins. AV942_14515 SM00422 helix_turn_helix, mercury resistance AV942_14525 SM00342 helix_turn_helix, arabinose operon control protein AV942_14585 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AV942_14610 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV942_14610 SM00382 ATPases associated with a variety of cellular activities AV942_14685 SM01011 Aminopeptidase P, N-terminal domain AV942_14710 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV942_14710 SM00387 Histidine kinase-like ATPases AV942_14710 SM00388 His Kinase A (phosphoacceptor) domain AV942_14710 SM00448 cheY-homologous receiver domain AV942_14795 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV942_14795 SM00895 AV942_14795 AV942_14805 SM00644 AV942_14805 AV942_14860 SM00957 SecA DEAD-like domain AV942_14860 SM00958 SecA preprotein cross-linking domain AV942_14875 SM00864 Tubulin/FtsZ family, GTPase domain AV942_14875 SM00865 Tubulin/FtsZ family, C-terminal domain AV942_14880 SM00842 Cell division protein FtsA AV942_15000 SM00028 Tetratricopeptide repeats AV942_15000 SM00267 diguanylate cyclase AV942_15010 SM00382 ATPases associated with a variety of cellular activities AV942_15010 SM00448 cheY-homologous receiver domain AV942_15015 SM00387 Histidine kinase-like ATPases AV942_15060 SM00732 Likely ribonuclease with RNase H fold. AV942_15070 SM00382 ATPases associated with a variety of cellular activities AV942_15160 SM00360 RNA recognition motif AV942_15185 SM00986 Uracil DNA glycosylase superfamily AV942_15185 SM00987 UreE urease accessory protein, C-terminal domain AV942_15205 SM00382 ATPases associated with a variety of cellular activities AV942_15215 SM00829 Enoylreductase AV942_15225 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AV942_15230 SM00226 Low molecular weight phosphatase family AV942_15245 SM00448 cheY-homologous receiver domain AV942_15255 SM00448 cheY-homologous receiver domain AV942_15255 SM00862 Transcriptional regulatory protein, C terminal AV942_15260 SM00387 Histidine kinase-like ATPases AV942_15260 SM00388 His Kinase A (phosphoacceptor) domain AV942_15350 SM00749 bacterial OsmY and nodulation domain AV942_15375 SM00421 helix_turn_helix, Lux Regulon AV942_15375 SM00448 cheY-homologous receiver domain AV942_15395 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV942_15395 SM00895 AV942_15395 AV942_15420 SM00267 diguanylate cyclase AV942_15420 SM00448 cheY-homologous receiver domain AV942_15465 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV942_15465 SM00091 PAS domain AV942_15465 SM00387 Histidine kinase-like ATPases AV942_15465 SM00388 His Kinase A (phosphoacceptor) domain AV942_15465 SM00448 cheY-homologous receiver domain AV942_15470 SM00287 Bacterial SH3 domain homologues AV942_15470 SM00644 AV942_15470 AV942_15510 SM00450 Rhodanese Homology Domain AV942_15655 SM00448 cheY-homologous receiver domain AV942_15665 SM01230 AV942_15665 AV942_15675 SM00091 PAS domain AV942_15675 SM00387 Histidine kinase-like ATPases AV942_15675 SM00388 His Kinase A (phosphoacceptor) domain AV942_15680 SM00382 ATPases associated with a variety of cellular activities AV942_15680 SM00448 cheY-homologous receiver domain AV942_15685 SM00073 Histidine Phosphotransfer domain AV942_15690 SM00563 Phosphate acyltransferases AV942_15720 SM00244 prohibitin homologues AV942_15730 SM00387 Histidine kinase-like ATPases AV942_15730 SM00388 His Kinase A (phosphoacceptor) domain AV942_15730 SM00448 cheY-homologous receiver domain AV942_15730 SM01358 AV942_15730 AV942_15845 SM00382 ATPases associated with a variety of cellular activities AV942_15865 SM00530 Helix-turn-helix XRE-family like proteins AV942_15930 SM00028 Tetratricopeptide repeats AV942_15945 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV942_15945 SM00895 AV942_15945 AV942_15965 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AV942_15985 SM00267 diguanylate cyclase AV942_16020 SM00448 cheY-homologous receiver domain AV942_16030 SM00886 Stress responsive A/B Barrel Domain AV942_16040 SM00382 ATPases associated with a variety of cellular activities AV942_16110 SM00849 Metallo-beta-lactamase superfamily AV942_16110 SM01027 Beta-Casp domain AV942_16125 SM00996 S-adenosyl-L-homocysteine hydrolase AV942_16125 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AV942_16145 SM00564 beta-propeller repeat AV942_16150 SM00062 Bacterial periplasmic substrate-binding proteins AV942_16165 SM00382 ATPases associated with a variety of cellular activities AV942_16195 SM00729 Elongator protein 3, MiaB family, Radical SAM AV942_16220 SM00421 helix_turn_helix, Lux Regulon AV942_16220 SM00448 cheY-homologous receiver domain AV942_16225 SM00091 PAS domain AV942_16225 SM00387 Histidine kinase-like ATPases AV942_16225 SM00388 His Kinase A (phosphoacceptor) domain AV942_16225 SM00448 cheY-homologous receiver domain AV942_16230 SM00897 FIST N domain AV942_16230 SM01204 AV942_16230 AV942_16235 SM00900 AV942_16235 AV942_16245 SM00421 helix_turn_helix, Lux Regulon AV942_16245 SM00448 cheY-homologous receiver domain AV942_16285 SM00965 Secretin and TonB N terminus short domain AV942_16310 SM00421 helix_turn_helix, Lux Regulon AV942_16340 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AV942_16345 SM00421 helix_turn_helix, Lux Regulon AV942_16345 SM00448 cheY-homologous receiver domain AV942_16360 SM00487 DEAD-like helicases superfamily AV942_16360 SM00490 helicase superfamily c-terminal domain AV942_16420 SM00267 diguanylate cyclase AV942_16470 SM00966 SpoVT / AbrB like domain AV942_16525 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV942_16525 SM00895 AV942_16525 AV942_16550 SM00155 Phospholipase D. Active site motifs. AV942_16580 SM00448 cheY-homologous receiver domain AV942_16590 SM00387 Histidine kinase-like ATPases AV942_16595 SM00849 Metallo-beta-lactamase superfamily AV942_16600 SM00486 DNA polymerase type-B family AV942_16630 SM00360 RNA recognition motif AV942_16665 SM00986 Uracil DNA glycosylase superfamily AV942_16665 SM00987 UreE urease accessory protein, C-terminal domain AV942_16670 SM00052 Putative diguanylate phosphodiesterase AV942_16670 SM00267 diguanylate cyclase AV942_16670 SM00448 cheY-homologous receiver domain AV942_16750 SM00173 Ras subfamily of RAS small GTPases AV942_16750 SM00175 Rab subfamily of small GTPases AV942_16755 SM00052 Putative diguanylate phosphodiesterase AV942_16755 SM00267 diguanylate cyclase AV942_16765 SM00563 Phosphate acyltransferases AV942_16770 SM00563 Phosphate acyltransferases AV942_16900 SM00052 Putative diguanylate phosphodiesterase AV942_16925 SM00849 Metallo-beta-lactamase superfamily AV942_16960 SM00530 Helix-turn-helix XRE-family like proteins AV942_16980 SM00903 Flavin reductase like domain AV942_17015 SM00100 Cyclic nucleotide-monophosphate binding domain AV942_17030 SM00849 Metallo-beta-lactamase superfamily AV942_17070 SM00900 AV942_17070 AV942_17160 SM00028 Tetratricopeptide repeats AV942_17170 SM00267 diguanylate cyclase AV942_17170 SM00448 cheY-homologous receiver domain AV942_17175 SM00479 AV942_17175 AV942_17180 SM00116 Domain in cystathionine beta-synthase and other proteins. AV942_17195 SM00387 Histidine kinase-like ATPases AV942_17195 SM00388 His Kinase A (phosphoacceptor) domain AV942_17195 SM00448 cheY-homologous receiver domain AV942_17225 SM00421 helix_turn_helix, Lux Regulon AV942_17225 SM00448 cheY-homologous receiver domain AV942_17250 SM01358 AV942_17250 AV942_17265 SM00052 Putative diguanylate phosphodiesterase AV942_17265 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV942_17265 SM00091 PAS domain AV942_17265 SM00267 diguanylate cyclase AV942_17310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV942_17370 SM00984 UDP binding domain AV942_17610 SM00662 RNA polymerases D AV942_17615 SM00363 S4 RNA-binding domain AV942_17615 SM01390 AV942_17615 AV942_17680 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AV942_17685 SM01374 AV942_17685 AV942_17690 SM00387 Histidine kinase-like ATPases AV942_17690 SM00388 His Kinase A (phosphoacceptor) domain AV942_17690 SM00448 cheY-homologous receiver domain AV942_17710 SM00967 RNA 2'-O ribose methyltransferase substrate binding AV942_17715 SM00316 Ribosomal protein S1-like RNA-binding domain AV942_17715 SM00357 Cold shock protein domain AV942_17715 SM00955 AV942_17715 AV942_17760 SM00671 Sel1-like repeats. AV942_17800 SM00387 Histidine kinase-like ATPases AV942_17800 SM00388 His Kinase A (phosphoacceptor) domain AV942_17800 SM00448 cheY-homologous receiver domain AV942_17820 SM00344 helix_turn_helix ASNC type AV942_17830 SM00357 Cold shock protein domain AV942_17860 SM00448 cheY-homologous receiver domain AV942_17870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV942_17870 SM00387 Histidine kinase-like ATPases AV942_17870 SM00388 His Kinase A (phosphoacceptor) domain AV942_17875 SM00448 cheY-homologous receiver domain AV942_17940 SM00382 ATPases associated with a variety of cellular activities AV942_17945 SM00421 helix_turn_helix, Lux Regulon AV942_17970 SM00382 ATPases associated with a variety of cellular activities AV942_17970 SM01086 C-terminal, D2-small domain, of ClpB protein AV942_17985 SM00487 DEAD-like helicases superfamily AV942_17985 SM00490 helicase superfamily c-terminal domain AV942_18000 SM00919 Malic enzyme, NAD binding domain AV942_18000 SM01274 AV942_18000 AV942_18050 SM00052 Putative diguanylate phosphodiesterase AV942_18065 SM00382 ATPases associated with a variety of cellular activities AV942_18070 SM00382 ATPases associated with a variety of cellular activities AV942_18070 SM00962 SRP54-type protein, GTPase domain AV942_18070 SM00963 SRP54-type protein, helical bundle domain AV942_18155 SM00382 ATPases associated with a variety of cellular activities AV942_18160 SM00448 cheY-homologous receiver domain AV942_18160 SM00862 Transcriptional regulatory protein, C terminal AV942_18165 SM00387 Histidine kinase-like ATPases AV942_18165 SM00388 His Kinase A (phosphoacceptor) domain AV942_18175 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV942_18190 SM00116 Domain in cystathionine beta-synthase and other proteins. AV942_18225 SM00838 Elongation factor G C-terminus AV942_18225 SM00889 Elongation factor G, domain IV AV942_18240 SM00663 RNA polymerase I subunit A N-terminus AV942_18265 SM00649 Ribosomal protein L11/L12 AV942_18285 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AV942_18285 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AV942_18300 SM00382 ATPases associated with a variety of cellular activities AV942_18320 SM00487 DEAD-like helicases superfamily AV942_18320 SM00490 helicase superfamily c-terminal domain AV942_18355 SM00642 Alpha-amylase domain AV942_18395 SM00487 DEAD-like helicases superfamily AV942_18395 SM00490 helicase superfamily c-terminal domain AV942_18400 SM00849 Metallo-beta-lactamase superfamily AV942_18410 SM00841 Elongation factor P, C-terminal AV942_18410 SM01185 AV942_18410 AV942_18485 SM00244 prohibitin homologues AV942_18490 SM00244 prohibitin homologues AV942_18510 SM01340 AV942_18510 AV942_18515 SM00257 Lysin motif AV942_18515 SM00646 AV942_18515 AV942_18575 SM00382 ATPases associated with a variety of cellular activities AV942_18610 SM00849 Metallo-beta-lactamase superfamily AV942_18630 SM00387 Histidine kinase-like ATPases AV942_18630 SM00388 His Kinase A (phosphoacceptor) domain AV942_18640 SM00382 ATPases associated with a variety of cellular activities AV942_18650 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV942_18655 SM00387 Histidine kinase-like ATPases AV942_18660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV942_18705 SM00354 helix_turn _helix lactose operon repressor AV942_18725 SM00267 diguanylate cyclase AV942_18780 SM00116 Domain in cystathionine beta-synthase and other proteins. AV942_18795 SM00867 YceI-like domain AV942_18825 SM00829 Enoylreductase AV942_18830 SM00267 diguanylate cyclase AV942_18835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV942_18835 SM00387 Histidine kinase-like ATPases AV942_18835 SM00388 His Kinase A (phosphoacceptor) domain AV942_18835 SM00448 cheY-homologous receiver domain AV942_18855 SM00420 helix_turn_helix, Deoxyribose operon repressor AV942_18855 SM01134 AV942_18855 AV942_18870 SM00267 diguanylate cyclase AV942_18885 SM00342 helix_turn_helix, arabinose operon control protein AV942_18885 SM01009 AlkA N-terminal domain AV942_18915 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AV942_18915 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AV942_18965 SM00965 Secretin and TonB N terminus short domain AV942_19025 SM00670 Large family of predicted nucleotide-binding domains AV942_19050 SM00883 Chaperonin 10 Kd subunit AV942_19085 SM00878 Biotin carboxylase C-terminal domain AV942_19105 SM00479 AV942_19105 AV942_19105 SM00990 AV942_19105 AV942_19135 SM00062 Bacterial periplasmic substrate-binding proteins AV942_19155 SM00798 AICARFT/IMPCHase bienzyme AV942_19155 SM00851 MGS-like domain AV942_19165 SM01209 AV942_19165 AV942_19165 SM01210 AV942_19165 AV942_19170 SM00047 Lysozyme subfamily 2 AV942_19195 SM00448 cheY-homologous receiver domain AV942_19195 SM00862 Transcriptional regulatory protein, C terminal AV942_19200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV942_19200 SM00387 Histidine kinase-like ATPases AV942_19200 SM00388 His Kinase A (phosphoacceptor) domain AV942_19225 SM00363 S4 RNA-binding domain AV942_19240 SM00382 ATPases associated with a variety of cellular activities AV942_19320 SM00867 YceI-like domain AV942_19355 SM00382 ATPases associated with a variety of cellular activities AV942_19375 SM00320 WD40 repeats AV942_19395 SM00316 Ribosomal protein S1-like RNA-binding domain AV942_19395 SM00732 Likely ribonuclease with RNase H fold. AV942_19405 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AV942_19420 SM00342 helix_turn_helix, arabinose operon control protein AV942_19440 SM00633 Glycosyl hydrolase family 10 AV942_19450 SM00861 Transketolase, pyrimidine binding domain AV942_19490 SM00710 Parallel beta-helix repeats AV942_19500 SM00813 Alpha-L-arabinofuranosidase C-terminus AV942_19535 SM00631 AV942_19535 AV942_19630 SM00563 Phosphate acyltransferases AV942_19650 SM00382 ATPases associated with a variety of cellular activities AV942_19715 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AV942_19815 SM00530 Helix-turn-helix XRE-family like proteins AV942_19825 SM00530 Helix-turn-helix XRE-family like proteins AV942_19830 SM00487 DEAD-like helicases superfamily AV942_19840 SM00487 DEAD-like helicases superfamily AV942_19840 SM00490 helicase superfamily c-terminal domain AV942_19855 SM00487 DEAD-like helicases superfamily AV942_19890 SM00028 Tetratricopeptide repeats AV942_19895 SM00849 Metallo-beta-lactamase superfamily AV942_19905 SM00421 helix_turn_helix, Lux Regulon AV942_19935 SM00327 von Willebrand factor (vWF) type A domain AV942_19940 SM00327 von Willebrand factor (vWF) type A domain AV942_19995 SM00342 helix_turn_helix, arabinose operon control protein AV942_20010 SM00422 helix_turn_helix, mercury resistance AV942_20045 SM00354 helix_turn _helix lactose operon repressor AV942_20060 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV942_20070 SM01144 AV942_20070 AV942_20090 SM00382 ATPases associated with a variety of cellular activities AV942_20130 SM00470 ParB-like nuclease domain AV942_20145 SM01228 AV942_20145 AV942_20245 SM00530 Helix-turn-helix XRE-family like proteins AV942_20270 SM00470 ParB-like nuclease domain AV942_20505 SM00974 AV942_20505 AV942_20690 SM00465 GIY-YIG type nucleases (URI domain) AV942_20720 SM00382 ATPases associated with a variety of cellular activities AV942_20845 SM00857 Resolvase, N terminal domain AV942_20865 SM00530 Helix-turn-helix XRE-family like proteins AV942_20875 SM00487 DEAD-like helicases superfamily AV942_21030 SM00382 ATPases associated with a variety of cellular activities AV942_21050 SM00923 MbtH-like protein AV942_21055 SM00823 Phosphopantetheine attachment site AV942_21085 SM00822 AV942_21085 AV942_21085 SM00825 Beta-ketoacyl synthase AV942_21090 SM00823 Phosphopantetheine attachment site AV942_21115 SM00823 Phosphopantetheine attachment site AV942_21295 SM00382 ATPases associated with a variety of cellular activities AV942_21310 SM00052 Putative diguanylate phosphodiesterase AV942_21325 SM00267 diguanylate cyclase AV942_21345 SM01126 AV942_21345 AV942_21415 SM00470 ParB-like nuclease domain AV942_21430 SM00530 Helix-turn-helix XRE-family like proteins