locus-tag	class	description
ambt_00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ambt_00020	COG0187	DNA topoisomerase II activity
ambt_00040	COG2818	Glycosylase
ambt_00050	COG3078	GTPase activator activity
ambt_00065	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ambt_00065	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ambt_00070	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
ambt_00075	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ambt_00090	COG0569	domain protein
ambt_00095	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ambt_00095	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ambt_00115	COG0758	DNA mediated transformation
ambt_00130	COG0009	L-threonylcarbamoyladenylate synthase
ambt_00135	COG0408	coproporphyrinogen oxidase activity
ambt_00140	COG3047	cAMP biosynthetic process
ambt_00155	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ambt_00160	COG0583	DNA-binding transcription factor activity
ambt_00185	COG0812	UDP-N-acetylmuramate dehydrogenase activity
ambt_00190	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
ambt_00190	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
ambt_00195	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
ambt_00230	COG0753	catalase activity
ambt_00235	COG4584	PFAM Integrase catalytic
ambt_00240	COG1484	DNA-dependent DNA replication
ambt_00245	COG0753	catalase activity
ambt_00260	COG0667	Aldo Keto reductase
ambt_00265	COG1283	sodium-dependent phosphate transmembrane transporter activity
ambt_00275	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ambt_00290	COG0189	ligase activity
ambt_00290	COG4067	protein conserved in archaea
ambt_00300	COG0189	ligase activity
ambt_00310	COG2205	protein histidine kinase activity
ambt_00310	COG0784	Response regulator, receiver
ambt_00310	COG2198	Histidine kinase
ambt_00320	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ambt_00345	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
ambt_00360	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ambt_00365	COG0572	uridine kinase
ambt_00410	COG1438	arginine binding
ambt_00415	COG0039	L-malate dehydrogenase activity
ambt_00430	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
ambt_00435	COG0545	Peptidyl-prolyl cis-trans isomerase
ambt_00440	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
ambt_00450	COG1805	sodium ion transport
ambt_00455	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
ambt_00460	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
ambt_00465	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
ambt_00470	COG2871	sodium ion transport
ambt_00475	COG1477	protein flavinylation
ambt_00485	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ambt_00495	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ambt_00505	COG0121	glutamine amidotransferase
ambt_00515	COG0583	DNA-binding transcription factor activity
ambt_00525	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ambt_00530	COG1574	metal-dependent hydrolase with the TIM-barrel fold
ambt_00540	COG5001	Diguanylate cyclase
ambt_00540	COG5002	protein histidine kinase activity
ambt_00555	COG0702	epimerase
ambt_00560	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
ambt_00585	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
ambt_00590	COG0457	Tetratricopeptide repeat
ambt_00600	COG0848	biopolymer transport protein
ambt_00610	COG0716	FMN binding
ambt_00630	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ambt_00645	COG0733	neurotransmitter:sodium symporter activity
ambt_00650	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ambt_00665	COG0668	transmembrane transport
ambt_00670	COG0204	Acyl-transferase
ambt_00675	COG0204	Acyl-transferase
ambt_00680	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
ambt_00705	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ambt_00715	COG1842	Phage shock protein A
ambt_00745	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ambt_00765	COG3300	MHYT domain
ambt_00765	COG5001	Diguanylate cyclase
ambt_00770	COG1573	uracil-dna glycosylase
ambt_00780	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ambt_00800	COG1309	transcriptional regulator
ambt_00830	COG0417	DNA replication proofreading
ambt_00840	COG4191	Histidine kinase
ambt_00860	COG0730	response to heat
ambt_00875	COG3568	Endonuclease Exonuclease Phosphatase
ambt_00910	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
ambt_00910	COG3264	Mechanosensitive ion channel
ambt_00915	COG2186	Transcriptional regulator
ambt_00920	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ambt_00925	COG0800	Aldolase
ambt_00955	COG0513	Belongs to the DEAD box helicase family
ambt_00960	COG1716	ATPase activity
ambt_00960	COG0842	Transport permease protein
ambt_00960	COG1131	(ABC) transporter
ambt_00975	COG0515	serine threonine protein kinase
ambt_00975	COG1357	PFAM Pentapeptide repeats (8 copies)
ambt_01045	COG0583	DNA-binding transcription factor activity
ambt_01065	COG2963	transposase activity
ambt_01070	COG2801	Transposase and inactivated derivatives
ambt_01090	COG4585	Histidine kinase
ambt_01095	COG2197	response regulator
ambt_01105	COG3901	Regulator of nitric oxide reductase transcription
ambt_01105	COG0348	domain, Protein
ambt_01115	COG2205	protein histidine kinase activity
ambt_01115	COG0784	Response regulator, receiver
ambt_01150	COG0535	radical SAM domain protein
ambt_01165	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
ambt_01170	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ambt_01180	COG1131	(ABC) transporter
ambt_01215	COG3706	GGDEF domain
ambt_01220	COG3706	GGDEF domain
ambt_01300	COG0251	oxidation-reduction process
ambt_01315	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
ambt_01340	COG0673	inositol 2-dehydrogenase activity
ambt_01400	COG0795	lipopolysaccharide-transporting ATPase activity
ambt_01405	COG0795	lipopolysaccharide-transporting ATPase activity
ambt_01415	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ambt_01420	COG2927	DNA polymerase III (CHI subunit)
ambt_01425	COG0525	valine-tRNA ligase activity
ambt_01445	COG3706	GGDEF domain
ambt_01460	COG0204	Acyl-transferase
ambt_01465	COG3437	response regulator, receiver
ambt_01475	COG3852	Histidine kinase
ambt_01485	COG0174	glutamine synthetase
ambt_01500	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ambt_01505	COG1914	H( )-stimulated, divalent metal cation uptake system
ambt_01555	COG0850	regulation of cytokinetic process
ambt_01560	COG2894	cell division
ambt_01580	COG0625	glutathione transferase activity
ambt_01585	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ambt_01595	COG1902	pentaerythritol trinitrate reductase activity
ambt_01605	COG0738	Major facilitator superfamily
ambt_01620	COG0739	heme binding
ambt_01645	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ambt_01660	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
ambt_01675	COG1476	TRANSCRIPTIONal
ambt_01685	COG0493	'glutamate synthase
ambt_01690	COG0067	glutamate synthase
ambt_01690	COG0070	glutamate synthase
ambt_01690	COG0069	glutamate synthase activity
ambt_01695	COG0784	Response regulator, receiver
ambt_01695	COG2198	Histidine kinase
ambt_01695	COG5002	protein histidine kinase activity
ambt_01710	COG2203	Gaf domain
ambt_01710	COG2199	diguanylate cyclase activity
ambt_01715	COG2828	Protein conserved in bacteria
ambt_01725	COG0372	Belongs to the citrate synthase family
ambt_01730	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
ambt_01740	COG4771	TonB-dependent receptor
ambt_01745	COG2197	response regulator
ambt_01750	COG4585	Histidine kinase
ambt_01820	COG2823	Periplasmic or secreted lipoprotein
ambt_01830	COG0792	nuclease activity
ambt_01835	COG3107	peptidoglycan biosynthetic process
ambt_01840	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
ambt_01855	COG1748	Saccharopine dehydrogenase
ambt_01880	COG5002	protein histidine kinase activity
ambt_01885	COG0745	RESPONSE REGULATOR receiver
ambt_01890	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
ambt_01895	COG2201	protein-glutamate methylesterase activity
ambt_01900	COG0798	PFAM Bile acid sodium symporter
ambt_01905	COG0431	NADPH-dependent FMN reductase
ambt_01915	COG0640	Transcriptional regulator
ambt_01930	COG4585	Histidine kinase
ambt_01945	COG0583	DNA-binding transcription factor activity
ambt_01955	COG0083	homoserine kinase activity
ambt_01965	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
ambt_01990	COG0625	glutathione transferase activity
ambt_02010	COG1902	pentaerythritol trinitrate reductase activity
ambt_02010	COG0446	pyridine nucleotide-disulphide oxidoreductase
ambt_02025	COG0762	integral membrane protein
ambt_02030	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
ambt_02035	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ambt_02055	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
ambt_02060	COG1678	Uncharacterized ACR, COG1678
ambt_02065	COG0189	ligase activity
ambt_02070	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ambt_02080	COG0668	transmembrane transport
ambt_02100	COG0784	Response regulator, receiver
ambt_02100	COG2198	Histidine kinase
ambt_02100	COG5002	protein histidine kinase activity
ambt_02105	COG2204	response regulator
ambt_02115	COG3706	GGDEF domain
ambt_02120	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
ambt_02120	COG0678	peroxiredoxin activity
ambt_02145	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ambt_02160	COG2001	Belongs to the MraZ family
ambt_02170	COG3116	cell division
ambt_02175	COG0768	penicillin binding
ambt_02180	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
ambt_02185	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ambt_02195	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
ambt_02200	COG0772	Belongs to the SEDS family
ambt_02210	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ambt_02215	COG1181	Belongs to the D-alanine--D-alanine ligase family
ambt_02220	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ambt_02225	COG0849	cell division
ambt_02235	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
ambt_02240	COG0739	heme binding
ambt_02250	COG0494	nUDIX hydrolase
ambt_02255	COG2988	succinylglutamate desuccinylase activity
ambt_02265	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
ambt_02270	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
ambt_02270	COG0237	dephospho-CoA kinase activity
ambt_02275	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
ambt_02280	COG1459	type II secretion system
ambt_02285	COG4969	Belongs to the N-Me-Phe pilin family
ambt_02310	COG2186	Transcriptional regulator
ambt_02315	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
ambt_02320	COG0508	dehydrogenase complex catalyzes the overall conversion of
ambt_02325	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ambt_02365	COG3313	Fe-S protein
ambt_02385	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ambt_02390	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
ambt_02395	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ambt_02410	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ambt_02420	COG0006	proline dipeptidase activity
ambt_02425	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ambt_02430	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ambt_02455	COG0583	DNA-binding transcription factor activity
ambt_02515	COG5433	transposase activity
ambt_02550	COG0656	L-ascorbic acid biosynthetic process
ambt_02560	COG2814	Major facilitator Superfamily
ambt_02605	COG0513	Belongs to the DEAD box helicase family
ambt_02610	COG3813	Protein conserved in bacteria
ambt_02625	COG2133	pyrroloquinoline quinone binding
ambt_02650	COG1136	(ABC) transporter
ambt_02650	COG0577	efflux transmembrane transporter activity
ambt_02655	COG1136	(ABC) transporter
ambt_02655	COG0577	efflux transmembrane transporter activity
ambt_02660	COG2204	response regulator
ambt_02665	COG3852	Histidine kinase
ambt_02680	COG0653	protein targeting
ambt_02710	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
ambt_02725	COG1451	nucleotide metabolic process
ambt_02740	COG1280	lysine exporter protein (LysE YggA)
ambt_02745	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ambt_02760	COG4249	Peptidase C14 caspase catalytic subunit p20
ambt_02760	COG2319	Wd-40 repeat
ambt_02780	COG0484	heat shock protein binding
ambt_02790	COG0583	DNA-binding transcription factor activity
ambt_02805	COG4681	YaeQ
ambt_02810	COG0514	ATP-dependent DNA helicase (RecQ)
ambt_02815	COG1295	ribonuclease BN
ambt_02825	COG1846	Transcriptional regulator
ambt_02830	COG1566	PFAM secretion protein HlyD family protein
ambt_02865	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
ambt_02870	COG0693	protein deglycase activity
ambt_02875	COG4221	oxidoreductase activity
ambt_02885	COG1971	Probably functions as a manganese efflux pump
ambt_02890	COG0109	protoheme IX farnesyltransferase activity
ambt_02900	COG1845	cytochrome c oxidase, subunit III
ambt_02910	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ambt_02920	COG1028	Short-chain dehydrogenase reductase Sdr
ambt_02960	COG1028	Short-chain dehydrogenase reductase Sdr
ambt_02975	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ambt_02990	COG1733	regulation of RNA biosynthetic process
ambt_02995	COG1028	Short-chain dehydrogenase reductase Sdr
ambt_03005	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ambt_03075	COG0826	peptidase U32
ambt_03080	COG1607	acyl-coa hydrolase
ambt_03100	COG3706	GGDEF domain
ambt_03140	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ambt_03150	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ambt_03190	COG1960	acyl-CoA dehydrogenase activity
ambt_03230	COG3279	Response regulator of the LytR AlgR family
ambt_03235	COG3275	phosphorelay sensor kinase activity
ambt_03250	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
ambt_03265	COG0189	ligase activity
ambt_03275	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ambt_03280	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ambt_03295	COG0789	Transcriptional regulator
ambt_03300	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
ambt_03310	COG4682	membrane
ambt_03320	COG1629	transport
ambt_03320	COG4774	siderophore transport
ambt_03340	COG1028	Short-chain dehydrogenase reductase Sdr
ambt_03345	COG4773	Receptor
ambt_03350	COG4774	siderophore transport
ambt_03375	COG0515	serine threonine protein kinase
ambt_03375	COG2815	serine threonine protein kinase
ambt_03400	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
ambt_03405	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
ambt_03410	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ambt_03415	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
ambt_03450	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
ambt_03455	COG1609	Transcriptional regulator
ambt_03465	COG1435	thymidine kinase activity
ambt_03485	COG1960	acyl-CoA dehydrogenase activity
ambt_03515	COG1560	Kdo2-lipid A biosynthetic process
ambt_03535	COG2827	Endonuclease containing a URI domain
ambt_03540	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
ambt_03540	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
ambt_03545	COG3267	Type II secretory pathway component ExeA
ambt_03545	COG3409	Peptidoglycan-binding domain 1 protein
ambt_03555	COG0489	protein tyrosine kinase activity
ambt_03600	COG1216	Glycosyl transferase, family 2
ambt_03615	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
ambt_03615	COG2755	lipolytic protein G-D-S-L family
ambt_03640	COG0438	transferase activity, transferring glycosyl groups
ambt_03665	COG1045	serine acetyltransferase
ambt_03715	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
ambt_03735	COG1785	Belongs to the alkaline phosphatase family
ambt_03740	COG2066	Belongs to the glutaminase family
ambt_03755	COG0754	glutathionylspermidine amidase activity
ambt_03780	COG1842	Phage shock protein A
ambt_03785	COG3789	protein conserved in bacteria
ambt_03800	COG0343	queuine tRNA-ribosyltransferase activity
ambt_03805	COG1862	Preprotein translocase
ambt_03810	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ambt_03815	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ambt_03845	COG0483	inositol monophosphate 1-phosphatase activity
ambt_03850	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
ambt_03910	COG1104	cysteine desulfurase activity
ambt_03915	COG0719	Fe-S assembly protein
ambt_03920	COG0396	ATPase activity
ambt_03925	COG0719	Fe-S assembly protein
ambt_03930	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ambt_03945	COG2166	iron-sulfur cluster assembly
ambt_03955	COG0820	rRNA (adenine-C2-)-methyltransferase activity
ambt_03980	COG2976	Protein conserved in bacteria
ambt_03985	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ambt_04000	COG1570	exodeoxyribonuclease VII activity
ambt_04005	COG0517	IMP dehydrogenase activity
ambt_04005	COG0516	GMP reductase activity
ambt_04020	COG0123	including yeast histone deacetylase and acetoin utilization protein
ambt_04025	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
ambt_04030	COG1234	tRNA 3'-trailer cleavage
ambt_04040	COG1720	tRNA m6t6A37 methyltransferase activity
ambt_04055	COG0544	peptidyl-prolyl cis-trans isomerase activity
ambt_04060	COG0740	serine-type endopeptidase activity
ambt_04065	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
ambt_04070	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
ambt_04075	COG0776	regulation of translation
ambt_04080	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ambt_04105	COG0385	Bile acid
ambt_04125	COG0268	Binds directly to 16S ribosomal RNA
ambt_04130	COG0728	peptidoglycan biosynthetic process
ambt_04135	COG0196	riboflavin kinase activity
ambt_04140	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
ambt_04150	COG1047	Peptidyl-prolyl cis-trans
ambt_04155	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
ambt_04195	COG4795	General secretion pathway protein
ambt_04215	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ambt_04230	COG0354	folic acid binding
ambt_04235	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
ambt_04250	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
ambt_04255	COG1595	DNA-templated transcription, initiation
ambt_04285	COG0681	Belongs to the peptidase S26 family
ambt_04305	COG0084	hydrolase, TatD family'
ambt_04315	COG0560	Phosphoserine phosphatase
ambt_04325	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
ambt_04335	COG0488	(ABC) transporter
ambt_04340	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ambt_04355	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ambt_04355	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ambt_04370	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
ambt_04380	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ambt_04385	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
ambt_04395	COG0142	geranyltranstransferase activity
ambt_04405	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
ambt_04415	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ambt_04430	COG4221	oxidoreductase activity
ambt_04445	COG1595	DNA-templated transcription, initiation
ambt_04460	COG0564	pseudouridine synthase activity
ambt_04470	COG0542	response to heat
ambt_04490	COG1183	phosphatidylcholine synthase activity
ambt_04505	COG5001	Diguanylate cyclase
ambt_04505	COG4251	negative regulation of phosphorylation
ambt_04505	COG3706	GGDEF domain
ambt_04505	COG2203	Gaf domain
ambt_04525	COG2319	Wd-40 repeat
ambt_04525	COG4249	Peptidase C14 caspase catalytic subunit p20
ambt_04535	COG3220	belongs to the UPF0276 family
ambt_04545	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
ambt_04550	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
ambt_04580	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
ambt_04585	COG0326	Molecular chaperone. Has ATPase activity
ambt_04605	COG3293	Transposase
ambt_04615	COG0681	Belongs to the peptidase S26 family
ambt_04630	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
ambt_04640	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ambt_04640	COG0140	phosphoribosyl-ATP diphosphatase activity
ambt_04655	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
ambt_04660	COG0131	Imidazoleglycerol-phosphate dehydratase
ambt_04660	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
ambt_04665	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ambt_04670	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
ambt_04675	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
ambt_04735	COG1199	ATP-dependent helicase activity
ambt_04740	COG1214	PFAM Peptidase M22, glycoprotease
ambt_04755	COG2267	carboxylic ester hydrolase activity
ambt_04760	COG0318	PFAM AMP-dependent synthetase and ligase
ambt_04765	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
ambt_04780	COG0179	Fumarylacetoacetate (FAA) hydrolase
ambt_04785	COG2983	Belongs to the UPF0260 family
ambt_04790	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ambt_04795	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
ambt_04805	COG2186	Transcriptional regulator
ambt_04845	COG4399	Belongs to the UPF0754 family
ambt_04850	COG1309	transcriptional regulator
ambt_04885	COG1902	pentaerythritol trinitrate reductase activity
ambt_04885	COG0446	pyridine nucleotide-disulphide oxidoreductase
ambt_04900	COG1028	Short-chain dehydrogenase reductase Sdr
ambt_04930	COG0463	Glycosyl transferase, family 2
ambt_04950	COG0642	Histidine kinase
ambt_04955	COG0745	RESPONSE REGULATOR receiver
ambt_04990	COG3101	peptidyl-lysine hydroxylation
ambt_05020	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ambt_05020	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
ambt_05045	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ambt_05060	COG0101	tRNA pseudouridine synthase activity
ambt_05070	COG0285	dihydrofolate synthase activity
ambt_05075	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
ambt_05080	COG1286	toxin biosynthetic process
ambt_05085	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
ambt_05110	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
ambt_05120	COG0604	alcohol dehydrogenase
ambt_05130	COG2080	2 iron, 2 sulfur cluster binding
ambt_05135	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
ambt_05140	COG1529	Aldehyde oxidase and xanthine dehydrogenase
ambt_05155	COG2268	Band 7 protein
ambt_05160	COG2268	Band 7 protein
ambt_05180	COG1785	Belongs to the alkaline phosphatase family
ambt_05185	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ambt_05190	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ambt_05210	COG0741	lytic transglycosylase activity
ambt_05210	COG1388	LysM domain
ambt_05215	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ambt_05220	COG2226	methyltransferase
ambt_05225	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ambt_05225	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ambt_05230	COG0489	protein tyrosine kinase activity
ambt_05240	COG0471	metal ion transport
ambt_05325	COG0582	viral genome integration into host DNA
ambt_05360	COG3177	Filamentation induced by cAMP protein fic
ambt_05385	COG4584	PFAM Integrase catalytic
ambt_05390	COG4584	PFAM Integrase catalytic
ambt_05395	COG1484	DNA-dependent DNA replication
ambt_05435	COG1484	DNA-dependent DNA replication
ambt_05475	COG0753	catalase activity
ambt_05490	COG0840	transmembrane signaling receptor activity
ambt_05500	COG0657	acetylesterase activity
ambt_05500	COG2755	lipolytic protein G-D-S-L family
ambt_05515	COG0738	Major facilitator superfamily
ambt_05520	COG1957	nucleoside hydrolase
ambt_05555	COG5002	protein histidine kinase activity
ambt_05555	COG3850	Histidine kinase
ambt_05560	COG0745	RESPONSE REGULATOR receiver
ambt_05570	COG2203	Gaf domain
ambt_05570	COG2199	diguanylate cyclase activity
ambt_05585	COG1764	response to oxidative stress
ambt_05590	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ambt_05600	COG0746	molybdenum cofactor guanylyltransferase activity
ambt_05615	COG3300	MHYT domain
ambt_05615	COG5001	Diguanylate cyclase
ambt_05635	COG0673	inositol 2-dehydrogenase activity
ambt_05640	COG4948	Mandelate Racemase Muconate Lactonizing
ambt_05645	COG1609	Transcriptional regulator
ambt_05695	COG1024	Enoyl-CoA hydratase
ambt_05705	COG2356	endonuclease I
ambt_05725	COG3665	Urea carboxylase-associated protein
ambt_05750	COG0745	RESPONSE REGULATOR receiver
ambt_05755	COG2205	protein histidine kinase activity
ambt_05800	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
ambt_05805	COG0469	pyruvate kinase activity
ambt_05810	COG1737	Transcriptional regulator
ambt_05815	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ambt_05825	COG0129	dihydroxy-acid dehydratase activity
ambt_05835	COG0800	Aldolase
ambt_05840	COG0676	glucose-6-phosphate 1-epimerase activity
ambt_05850	COG1640	4-alpha-glucanotransferase
ambt_05855	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
ambt_05865	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
ambt_05885	COG2866	Carboxypeptidase
ambt_05890	COG1115	amino acid carrier protein
ambt_05900	COG3139	Protein of unknown function (DUF1315)
ambt_05925	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
ambt_05955	COG0784	Response regulator, receiver
ambt_05960	COG4251	negative regulation of phosphorylation
ambt_05970	COG2204	response regulator
ambt_05985	COG0583	DNA-binding transcription factor activity
ambt_05995	COG0640	Transcriptional regulator
ambt_06015	COG0583	DNA-binding transcription factor activity
ambt_06030	COG3132	Protein of unknown function, DUF480
ambt_06040	COG3300	MHYT domain
ambt_06040	COG5001	Diguanylate cyclase
ambt_06045	COG1022	Amp-dependent synthetase and ligase
ambt_06055	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
ambt_06060	COG1074	ATP-dependent DNA helicase activity
ambt_06065	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
ambt_06085	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ambt_06100	COG3268	Saccharopine dehydrogenase
ambt_06105	COG0436	Aminotransferase
ambt_06115	COG0784	Response regulator, receiver
ambt_06115	COG2205	protein histidine kinase activity
ambt_06115	COG5002	protein histidine kinase activity
ambt_06140	COG1028	Short-chain dehydrogenase reductase Sdr
ambt_06150	COG5433	transposase activity
ambt_06155	COG5433	transposase activity
ambt_06160	COG5433	transposase activity
ambt_06170	COG5433	transposase activity
ambt_06245	COG3547	Transposase (IS116 IS110 IS902 family)
ambt_06400	COG0596	Alpha beta hydrolase
ambt_06405	COG2801	Transposase and inactivated derivatives
ambt_06465	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ambt_06470	COG0521	Mo-molybdopterin cofactor biosynthetic process
ambt_06475	COG0315	cyclic pyranopterin monophosphate synthase activity
ambt_06480	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
ambt_06485	COG0314	molybdopterin synthase activity
ambt_06500	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
ambt_06505	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ambt_06530	COG4771	TonB-dependent receptor
ambt_06570	COG0596	Alpha beta hydrolase
ambt_06575	COG1250	3-hydroxyacyl-CoA dehydrogenase
ambt_06575	COG1024	Enoyl-CoA hydratase
ambt_06580	COG0183	Belongs to the thiolase family
ambt_06585	COG1960	acyl-CoA dehydrogenase activity
ambt_06590	COG0596	Alpha beta hydrolase
ambt_06600	COG2390	Transcriptional regulator
ambt_06605	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ambt_06615	COG0246	Mannitol dehydrogenase
ambt_06635	COG0668	transmembrane transport
ambt_06660	COG4771	TonB-dependent receptor
ambt_06670	COG2198	Histidine kinase
ambt_06670	COG0784	Response regulator, receiver
ambt_06670	COG5002	protein histidine kinase activity
ambt_06675	COG3437	response regulator, receiver
ambt_06685	COG0195	Participates in both transcription termination and antitermination
ambt_06700	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
ambt_06710	COG4269	membrane
ambt_06715	COG0501	Belongs to the peptidase M48B family
ambt_06720	COG3706	GGDEF domain
ambt_06725	COG0596	Alpha beta hydrolase
ambt_06735	COG3153	acetyltransferase
ambt_06735	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ambt_06760	COG0450	alkyl hydroperoxide reductase
ambt_06795	COG1032	radical SAM domain protein
ambt_06815	COG4771	TonB-dependent receptor
ambt_06830	COG4134	Bacterial extracellular solute-binding protein
ambt_06835	COG4135	transport system, permease component
ambt_06840	COG4136	ATPase activity
ambt_06845	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
ambt_06860	COG3706	GGDEF domain
ambt_06860	COG4251	negative regulation of phosphorylation
ambt_06860	COG5001	Diguanylate cyclase
ambt_06860	COG2203	Gaf domain
ambt_06890	COG0583	DNA-binding transcription factor activity
ambt_06925	COG1595	DNA-templated transcription, initiation
ambt_06935	COG1012	belongs to the aldehyde dehydrogenase family
ambt_06960	COG3668	Plasmid stabilization system
ambt_06970	COG2814	Major facilitator Superfamily
ambt_06975	COG3293	Transposase
ambt_06980	COG4771	TonB-dependent receptor
ambt_06995	COG0582	viral genome integration into host DNA
ambt_07030	COG2867	negative regulation of translational initiation
ambt_07035	COG2914	Belongs to the UPF0125 (RnfH) family
ambt_07045	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ambt_07050	COG4771	TonB-dependent receptor
ambt_07055	COG0457	Tetratricopeptide repeat
ambt_07060	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
ambt_07065	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
ambt_07070	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
ambt_07080	COG0356	it plays a direct role in the translocation of protons across the membrane
ambt_07100	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
ambt_07125	COG2814	Major facilitator Superfamily
ambt_07170	COG1196	nuclear chromosome segregation
ambt_07180	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
ambt_07185	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
ambt_07190	COG5002	protein histidine kinase activity
ambt_07195	COG0745	RESPONSE REGULATOR receiver
ambt_07220	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ambt_07265	COG2217	Heavy metal translocating P-type atpase
ambt_07320	COG2132	Multicopper oxidase
ambt_07465	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
ambt_07480	COG1132	(ABC) transporter
ambt_07490	COG1663	tetraacyldisaccharide 4'-kinase activity
ambt_07530	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ambt_07535	COG0435	Glutathione S-transferase
ambt_07550	COG0372	Belongs to the citrate synthase family
ambt_07555	COG2009	succinate dehydrogenase
ambt_07560	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ambt_07565	COG1053	succinate dehydrogenase
ambt_07575	COG0567	Dehydrogenase, E1 component
ambt_07580	COG0508	dehydrogenase complex catalyzes the overall conversion of
ambt_07610	COG2801	Transposase and inactivated derivatives
ambt_07635	COG4667	esterase of the alpha-beta hydrolase superfamily
ambt_07655	COG0366	Alpha amylase catalytic
ambt_07665	COG1874	Beta-galactosidase
ambt_07665	COG0366	Alpha amylase catalytic
ambt_07680	COG1028	Short-chain dehydrogenase reductase Sdr
ambt_07685	COG2267	carboxylic ester hydrolase activity
ambt_07695	COG0616	signal peptide processing
ambt_07715	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
ambt_07720	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
ambt_07725	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ambt_07730	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ambt_07735	COG0386	Belongs to the glutathione peroxidase family
ambt_07740	COG2084	Dehydrogenase
ambt_07750	COG1960	acyl-CoA dehydrogenase activity
ambt_07755	COG1024	Enoyl-CoA hydratase
ambt_07760	COG2226	methyltransferase
ambt_07770	COG3083	sulfuric ester hydrolase activity
ambt_07775	COG3082	Protein of unknown function (DUF1414)
ambt_07780	COG3081	Nucleoid-associated protein
ambt_07815	COG3275	phosphorelay sensor kinase activity
ambt_07820	COG3279	Response regulator of the LytR AlgR family
ambt_07825	COG0205	6-phosphofructokinase activity
ambt_07835	COG2205	protein histidine kinase activity
ambt_07835	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ambt_07900	COG0513	Belongs to the DEAD box helicase family
ambt_07905	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ambt_07910	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ambt_07915	COG0583	DNA-binding transcription factor activity
ambt_07935	COG1760	l-serine dehydratase
ambt_07940	COG0494	nUDIX hydrolase
ambt_07955	COG1322	Protein conserved in bacteria
ambt_07960	COG1404	Belongs to the peptidase S8 family
ambt_07965	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
ambt_07970	COG0022	dehydrogenase e1 component
ambt_07980	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ambt_07985	COG0515	serine threonine protein kinase
ambt_07990	COG1946	Acyl-CoA thioesterase
ambt_08000	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ambt_08010	COG1956	GAF domain-containing protein
ambt_08025	COG0793	Belongs to the peptidase S41A family
ambt_08030	COG0733	neurotransmitter:sodium symporter activity
ambt_08040	COG0308	aminopeptidase N
ambt_08070	COG2902	Dehydrogenase
ambt_08075	COG0167	dihydroorotate dehydrogenase activity
ambt_08100	COG3130	regulation of translation
ambt_08105	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ambt_08115	COG0415	Belongs to the DNA photolyase family
ambt_08120	COG0415	Belongs to the DNA photolyase family
ambt_08125	COG3046	protein related to deoxyribodipyrimidine photolyase
ambt_08190	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ambt_08195	COG0589	response to stress
ambt_08205	COG0069	glutamate synthase activity
ambt_08220	COG2193	ferroxidase activity
ambt_08230	COG3278	Belongs to the heme-copper respiratory oxidase family
ambt_08245	COG2010	Cytochrome c
ambt_08270	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ambt_08275	COG0589	response to stress
ambt_08280	COG0037	tRNA processing
ambt_08285	COG1752	Esterase of the alpha-beta hydrolase superfamily
ambt_08305	COG1280	lysine exporter protein (LysE YggA)
ambt_08310	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ambt_08315	COG2897	thiosulfate sulfurtransferase activity
ambt_08320	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
ambt_08335	COG0322	excinuclease ABC activity
ambt_08340	COG2197	response regulator
ambt_08345	COG1741	Belongs to the pirin family
ambt_08390	COG0745	RESPONSE REGULATOR receiver
ambt_08420	COG0670	Belongs to the BI1 family
ambt_08430	COG2923	Belongs to the DsrF TusC family
ambt_08440	COG2920	part of a sulfur-relay system
ambt_08445	COG0561	phosphatase activity
ambt_08460	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ambt_08465	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
ambt_08470	COG1674	ftsk spoiiie
ambt_08470	COG0531	amino acid
ambt_08480	COG0686	Belongs to the AlaDH PNT family
ambt_08485	COG0284	orotidine-5'-phosphate decarboxylase activity
ambt_08490	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
ambt_08495	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
ambt_08505	COG0776	regulation of translation
ambt_08510	COG0539	negative regulation of cytoplasmic translation
ambt_08515	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
ambt_08520	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
ambt_08525	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
ambt_08540	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ambt_08545	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ambt_08550	COG0633	Ferredoxin
ambt_08555	COG5002	protein histidine kinase activity
ambt_08560	COG0745	RESPONSE REGULATOR receiver
ambt_08620	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
ambt_08630	COG3547	Transposase (IS116 IS110 IS902 family)
ambt_08730	COG4584	PFAM Integrase catalytic
ambt_08805	COG1131	(ABC) transporter
ambt_08840	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
ambt_08845	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ambt_08855	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ambt_08865	COG4783	chaperone-mediated protein folding
ambt_08880	COG1393	Belongs to the ArsC family
ambt_08915	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ambt_08950	COG0572	uridine kinase
ambt_08955	COG3769	mannosylglycerate metabolic process
ambt_08960	COG1215	transferase activity, transferring glycosyl groups
ambt_08965	COG0366	Alpha amylase catalytic
ambt_08970	COG0303	'Molybdopterin
ambt_08975	COG0534	Mate efflux family protein
ambt_08995	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
ambt_09020	COG3293	Transposase
ambt_09035	COG0405	Gamma-glutamyltransferase
ambt_09040	COG1024	Enoyl-CoA hydratase
ambt_09075	COG1448	Aminotransferase
ambt_09080	COG1671	Belongs to the UPF0178 family
ambt_09085	COG1028	Short-chain dehydrogenase reductase Sdr
ambt_09095	COG1960	acyl-CoA dehydrogenase activity
ambt_09100	COG1917	Cupin 2, conserved barrel domain protein
ambt_09100	COG2207	Transcriptional regulator
ambt_09150	COG0596	Alpha beta hydrolase
ambt_09160	COG0716	FMN binding
ambt_09185	COG2610	gluconate transmembrane transporter activity
ambt_09190	COG3265	gluconokinase activity
ambt_09195	COG1609	Transcriptional regulator
ambt_09205	COG1984	allophanate hydrolase subunit 2
ambt_09220	COG2996	Protein conserved in bacteria
ambt_09225	COG1765	OsmC-like protein
ambt_09230	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ambt_09255	COG0436	Aminotransferase
ambt_09275	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ambt_09310	COG0232	Belongs to the dGTPase family. Type 2 subfamily
ambt_09320	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
ambt_09330	COG1238	metal cluster binding
ambt_09340	COG3012	SEC-C Motif Domain Protein
ambt_09375	COG4628	conserved protein (DUF2132)
ambt_09385	COG0454	-acetyltransferase
ambt_09390	COG1119	ATPase activity
ambt_09400	COG1185	polyribonucleotide nucleotidyltransferase activity
ambt_09410	COG0668	transmembrane transport
ambt_09415	COG3293	Transposase
ambt_09430	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ambt_09465	COG5001	Diguanylate cyclase
ambt_09465	COG3300	MHYT domain
ambt_09470	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ambt_09475	COG0149	triose-phosphate isomerase activity
ambt_09480	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ambt_09485	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ambt_09490	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ambt_09495	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
ambt_09500	COG1534	Rna-binding protein
ambt_09510	COG1067	ATP-dependent peptidase activity
ambt_09515	COG0495	leucyl-tRNA aminoacylation
ambt_09525	COG1466	dna polymerase III delta subunit
ambt_09530	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ambt_09535	COG0799	negative regulation of ribosome biogenesis
ambt_09540	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
ambt_09545	COG0768	penicillin binding
ambt_09550	COG0772	Belongs to the SEDS family
ambt_09555	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ambt_09560	COG1686	Belongs to the peptidase S11 family
ambt_09565	COG2921	Belongs to the UPF0250 family
ambt_09570	COG0321	lipoyl(octanoyl) transferase activity
ambt_09575	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
ambt_09585	COG0252	asparaginase activity
ambt_09595	COG0778	Nitroreductase
ambt_09610	COG0616	signal peptide processing
ambt_09615	COG3091	SprT-like family
ambt_09620	COG3092	negative regulation of chromosome organization
ambt_09630	COG0492	ferredoxin-NADP+ reductase activity
ambt_09635	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
ambt_09640	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
ambt_09645	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ambt_09655	COG0542	response to heat
ambt_09660	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ambt_09665	COG1278	Cold shock
ambt_09675	COG1187	pseudouridine synthase activity
ambt_09680	COG0482	sulfurtransferase activity
ambt_09685	COG2915	High frequency lysogenization protein hflD homolog
ambt_09690	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ambt_09700	COG2850	peptidyl-arginine hydroxylation
ambt_09720	COG0247	lactate metabolic process
ambt_09720	COG0277	FAD linked oxidase domain protein
ambt_09725	COG3123	guanosine phosphorylase activity
ambt_09765	COG1695	Transcriptional regulator
ambt_09785	COG0625	glutathione transferase activity
ambt_09815	COG3265	gluconokinase activity
ambt_09825	COG1028	Short-chain dehydrogenase reductase Sdr
ambt_09840	COG1609	Transcriptional regulator
ambt_09845	COG0679	Auxin Efflux Carrier
ambt_09865	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ambt_09865	COG0574	Belongs to the PEP-utilizing enzyme family
ambt_09890	COG1942	4-Oxalocrotonate Tautomerase
ambt_09910	COG1714	RDD family
ambt_09935	COG0745	RESPONSE REGULATOR receiver
ambt_09935	COG3706	GGDEF domain
ambt_09940	COG0702	epimerase
ambt_09950	COG0084	hydrolase, TatD family'
ambt_09955	COG0470	DNA polymerase III
ambt_09965	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ambt_09970	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ambt_09975	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ambt_09980	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ambt_09995	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ambt_10000	COG0416	fatty acid biosynthetic process
ambt_10010	COG1399	metal-binding, possibly nucleic acid-binding protein
ambt_10015	COG0424	maF-like protein
ambt_10020	COG0546	phosphoglycolate phosphatase activity
ambt_10030	COG1530	ribonuclease E activity
ambt_10050	COG2153	protein acetylation
ambt_10070	COG0625	glutathione transferase activity
ambt_10110	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
ambt_10120	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ambt_10125	COG3724	N-succinylarginine dihydrolase activity
ambt_10130	COG2373	Large extracellular alpha-helical protein
ambt_10130	COG4932	domain protein
ambt_10130	COG1388	LysM domain
ambt_10135	COG1301	dicarboxylic acid transport
ambt_10140	COG4591	ABC-type transport system involved in lipoprotein release permease component
ambt_10150	COG4943	cyclic-guanylate-specific phosphodiesterase activity
ambt_10160	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ambt_10165	COG0328	RNA-DNA hybrid ribonuclease activity
ambt_10170	COG1063	alcohol dehydrogenase
ambt_10195	COG1643	Atp-dependent helicase
ambt_10235	COG4999	Histidine kinase
ambt_10235	COG2205	protein histidine kinase activity
ambt_10235	COG3437	response regulator, receiver
ambt_10235	COG3850	Histidine kinase
ambt_10255	COG2925	Exonuclease
ambt_10265	COG3706	GGDEF domain
ambt_10270	COG0183	Belongs to the thiolase family
ambt_10275	COG0789	Transcriptional regulator
ambt_10280	COG1960	acyl-CoA dehydrogenase activity
ambt_10285	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ambt_10290	COG1024	Enoyl-CoA hydratase
ambt_10330	COG1957	nucleoside hydrolase
ambt_10345	COG2814	Major facilitator Superfamily
ambt_10380	COG0708	Exodeoxyribonuclease III
ambt_10395	COG4591	ABC-type transport system involved in lipoprotein release permease component
ambt_10405	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ambt_10415	COG2096	Adenosyltransferase
ambt_10420	COG0471	metal ion transport
ambt_10425	COG1472	Belongs to the glycosyl hydrolase 3 family
ambt_10435	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ambt_10460	COG0072	phenylalanine-tRNA ligase activity
ambt_10460	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ambt_10500	COG2246	polysaccharide biosynthetic process
ambt_10505	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
ambt_10505	COG2755	lipolytic protein G-D-S-L family
ambt_10510	COG0438	transferase activity, transferring glycosyl groups
ambt_10540	COG1216	Glycosyl transferase, family 2
ambt_10590	COG1216	Glycosyl transferase, family 2
ambt_10590	COG0463	Glycosyl transferase, family 2
ambt_10595	COG1215	transferase activity, transferring glycosyl groups
ambt_10610	COG1045	serine acetyltransferase
ambt_10620	COG0438	transferase activity, transferring glycosyl groups
ambt_10655	COG4464	protein tyrosine phosphatase activity
ambt_10660	COG0489	protein tyrosine kinase activity
ambt_10665	COG1596	polysaccharide export
ambt_10675	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
ambt_10695	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
ambt_10705	COG1028	Short-chain dehydrogenase reductase Sdr
ambt_10745	COG0730	response to heat
ambt_10750	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ambt_10775	COG2233	PERMEase
ambt_10790	COG0784	Response regulator, receiver
ambt_10790	COG2205	protein histidine kinase activity
ambt_10795	COG0745	RESPONSE REGULATOR receiver
ambt_10795	COG3706	GGDEF domain
ambt_10800	COG3300	MHYT domain
ambt_10800	COG5001	Diguanylate cyclase
ambt_10810	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
ambt_10815	COG2252	PERMEase
ambt_10830	COG1309	transcriptional regulator
ambt_10840	COG1529	Aldehyde oxidase and xanthine dehydrogenase
ambt_10855	COG2351	hydroxyisourate hydrolase activity
ambt_10860	COG0402	S-adenosylhomocysteine deaminase activity
ambt_10870	COG5002	protein histidine kinase activity
ambt_10870	COG5001	Diguanylate cyclase
ambt_10870	COG3447	MASE1 domain protein
ambt_10875	COG0745	RESPONSE REGULATOR receiver
ambt_10875	COG3706	GGDEF domain
ambt_10975	COG0740	serine-type endopeptidase activity
ambt_11000	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
ambt_11020	COG2211	Major facilitator Superfamily
ambt_11020	COG2190	(PTS) system
ambt_11025	COG1393	Belongs to the ArsC family
ambt_11055	COG2988	succinylglutamate desuccinylase activity
ambt_11065	COG0058	SHG alpha-glucan phosphorylase activity
ambt_11070	COG0033	Phosphoglucomutase
ambt_11075	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
ambt_11080	COG0714	Associated with various cellular activities
ambt_11095	COG2116	formate transmembrane transporter activity
ambt_11105	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
ambt_11130	COG0583	DNA-binding transcription factor activity
ambt_11145	COG3094	Invasion gene expression up-regulator, SirB
ambt_11150	COG0784	Response regulator, receiver
ambt_11150	COG3437	response regulator, receiver
ambt_11155	COG2890	protein-(glutamine-N5) methyltransferase activity
ambt_11165	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
ambt_11170	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
ambt_11175	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
ambt_11180	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ambt_11185	COG5001	Diguanylate cyclase
ambt_11195	COG1064	alcohol dehydrogenase
ambt_11210	COG0012	GTP binding
ambt_11215	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ambt_11225	COG1115	amino acid carrier protein
ambt_11230	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ambt_11245	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
ambt_11245	COG2755	lipolytic protein G-D-S-L family
ambt_11265	COG5433	transposase activity
ambt_11280	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ambt_11295	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
ambt_11300	COG1215	transferase activity, transferring glycosyl groups
ambt_11305	COG0438	transferase activity, transferring glycosyl groups
ambt_11330	COG0489	protein tyrosine kinase activity
ambt_11395	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ambt_11405	COG1702	phosphate starvation-inducible protein PhoH
ambt_11415	COG4535	Mg2 and Co2 transporter CorC
ambt_11420	COG0815	Transfers the fatty acyl group on membrane lipoproteins
ambt_11425	COG0280	phosphate acetyltransferase
ambt_11425	COG0857	belongs to the CobB CobQ family
ambt_11430	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
ambt_11435	COG0071	Belongs to the small heat shock protein (HSP20) family
ambt_11460	COG0840	transmembrane signaling receptor activity
ambt_11465	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ambt_11470	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ambt_11475	COG0505	Belongs to the CarA family
ambt_11480	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
ambt_11505	COG3909	cytochrome
ambt_11510	COG0484	heat shock protein binding
ambt_11520	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
ambt_11525	COG3437	response regulator, receiver
ambt_11525	COG2205	protein histidine kinase activity
ambt_11525	COG3850	Histidine kinase
ambt_11525	COG4999	Histidine kinase
ambt_11540	COG2610	gluconate transmembrane transporter activity
ambt_11545	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ambt_11555	COG1028	Short-chain dehydrogenase reductase Sdr
ambt_11570	COG0497	DNA recombination
ambt_11575	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ambt_11580	COG0500	methyltransferase
ambt_11585	COG2733	membrane
ambt_11600	COG0110	maltose O-acetyltransferase activity
ambt_11610	COG0656	L-ascorbic acid biosynthetic process
ambt_11625	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ambt_11630	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
ambt_11635	COG0009	L-threonylcarbamoyladenylate synthase
ambt_11640	COG0613	PHP domain protein
ambt_11645	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
ambt_11655	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
ambt_11660	COG0135	phosphoribosylanthranilate isomerase activity
ambt_11660	COG0134	indole-3-glycerol-phosphate synthase activity
ambt_11670	COG0159	tryptophan synthase activity
ambt_11675	COG2350	Protein conserved in bacteria
ambt_11690	COG0745	RESPONSE REGULATOR receiver
ambt_11695	COG2205	protein histidine kinase activity
ambt_11700	COG0628	permease
ambt_11705	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ambt_11710	COG1090	epimerase
ambt_11715	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
ambt_11720	COG4181	ATPase activity
ambt_11740	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ambt_11755	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ambt_11765	COG0745	RESPONSE REGULATOR receiver
ambt_11775	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ambt_11780	COG5265	(ABC) transporter
ambt_11790	COG2814	Major facilitator Superfamily
ambt_11795	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
ambt_11800	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
ambt_11805	COG4139	cobalamin transport
ambt_11810	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ambt_11825	COG2226	methyltransferase
ambt_11830	COG0156	8-amino-7-oxononanoate synthase activity
ambt_11855	COG0456	acetyltransferase
ambt_11860	COG0189	ligase activity
ambt_11875	COG0017	Asparaginyl-tRNA synthetase
ambt_11885	COG2995	paraquat-inducible protein a
ambt_11890	COG3008	intermembrane lipid transfer
ambt_11890	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ambt_11915	COG1309	transcriptional regulator
ambt_11925	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ambt_11930	COG0517	IMP dehydrogenase activity
ambt_11940	COG1063	alcohol dehydrogenase
ambt_11945	COG0583	DNA-binding transcription factor activity
ambt_11950	COG3038	cytochrome b561
ambt_11955	COG0753	catalase activity
ambt_11960	COG4221	oxidoreductase activity
ambt_11995	COG2271	Major facilitator Superfamily
ambt_12045	COG0024	Methionine aminopeptidase
ambt_12055	COG3706	GGDEF domain
ambt_12055	COG0745	RESPONSE REGULATOR receiver
ambt_12070	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
ambt_12075	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
ambt_12085	COG2885	chlorophyll binding
ambt_12090	COG0823	Involved in the tonB-independent uptake of proteins
ambt_12105	COG0811	peptide transport
ambt_12110	COG0824	Thioesterase
ambt_12115	COG2255	four-way junction helicase activity
ambt_12130	COG0494	nUDIX hydrolase
ambt_12135	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
ambt_12150	COG2204	response regulator
ambt_12160	COG2205	protein histidine kinase activity
ambt_12180	COG3706	GGDEF domain
ambt_12180	COG0745	RESPONSE REGULATOR receiver
ambt_12190	COG0023	Translation Initiation Factor
ambt_12195	COG0745	RESPONSE REGULATOR receiver
ambt_12200	COG0077	Prephenate dehydratase
ambt_12200	COG1605	Chorismate mutase
ambt_12205	COG0287	Prephenate dehydrogenase
ambt_12205	COG1605	Chorismate mutase
ambt_12210	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ambt_12215	COG2860	membrane
ambt_12230	COG0335	large ribosomal subunit rRNA binding
ambt_12235	COG0336	Belongs to the RNA methyltransferase TrmD family
ambt_12240	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
ambt_12245	COG0228	four-way junction DNA binding
ambt_12265	COG1132	(ABC) transporter
ambt_12270	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ambt_12280	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
ambt_12310	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ambt_12315	COG4137	Cytochrome C assembly protein
ambt_12320	COG4536	flavin adenine dinucleotide binding
ambt_12330	COG2062	phosphohistidine phosphatase, SixA
ambt_12335	COG1025	Belongs to the peptidase M16 family
ambt_12355	COG1250	3-hydroxyacyl-CoA dehydrogenase
ambt_12355	COG1024	Enoyl-CoA hydratase
ambt_12365	COG0714	Associated with various cellular activities
ambt_12385	COG2304	oxidoreductase activity
ambt_12400	COG1595	DNA-templated transcription, initiation
ambt_12410	COG3706	GGDEF domain
ambt_12415	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ambt_12420	COG0175	sulfate reduction
ambt_12425	COG0529	Catalyzes the synthesis of activated sulfate
ambt_12440	COG0471	metal ion transport
ambt_12440	COG3273	potassium ion transport
ambt_12465	COG0367	asparagine synthase
ambt_12475	COG0602	queuosine metabolic process
ambt_12500	COG0556	nucleotide-excision repair
ambt_12505	COG0534	Mate efflux family protein
ambt_12510	COG4657	Part of a membrane complex involved in electron transport
ambt_12515	COG2878	Part of a membrane complex involved in electron transport
ambt_12520	COG4656	Part of a membrane complex involved in electron transport
ambt_12525	COG4658	electron transport chain
ambt_12535	COG4660	Part of a membrane complex involved in electron transport
ambt_12540	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ambt_12550	COG4946	Tricorn protease homolog
ambt_12550	COG1506	peptidase
ambt_12550	COG0823	Involved in the tonB-independent uptake of proteins
ambt_12575	COG1278	Cold shock
ambt_12580	COG0346	lactoylglutathione lyase activity
ambt_12585	COG0584	glycerophosphoryl diester phosphodiesterase
ambt_12590	COG2885	chlorophyll binding
ambt_12595	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ambt_12600	COG0450	alkyl hydroperoxide reductase
ambt_12625	COG4771	TonB-dependent receptor
ambt_12630	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ambt_12640	COG2766	serine protein kinase
ambt_12645	COG2718	Belongs to the UPF0229 family
ambt_12650	COG2719	SpoVR family
ambt_12670	COG2890	protein-(glutamine-N5) methyltransferase activity
ambt_12695	COG1136	(ABC) transporter
ambt_12695	COG0577	efflux transmembrane transporter activity
ambt_12705	COG1136	(ABC) transporter
ambt_12710	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ambt_12730	COG2918	glutathione biosynthetic process
ambt_12735	COG0612	Peptidase, M16
ambt_12745	COG0564	pseudouridine synthase activity
ambt_12750	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
ambt_12755	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
ambt_12760	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
ambt_12765	COG1595	DNA-templated transcription, initiation
ambt_12790	COG2175	clavaminate synthase activity
ambt_12830	COG0583	DNA-binding transcription factor activity
ambt_12835	COG5433	transposase activity
ambt_12860	COG0456	acetyltransferase
ambt_12905	COG1444	tRNA N-acetyltransferase activity
ambt_12920	COG0848	biopolymer transport protein
ambt_12925	COG0811	peptide transport
ambt_12930	COG0811	peptide transport
ambt_12985	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ambt_12990	COG1522	sequence-specific DNA binding
ambt_12995	COG0625	glutathione transferase activity
ambt_13010	COG3186	Phenylalanine-4-hydroxylase
ambt_13025	COG1842	Phage shock protein A
ambt_13030	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
ambt_13035	COG0747	negative chemotaxis
ambt_13040	COG4168	peptide transport system, permease
ambt_13045	COG4171	peptide transport system, permease
ambt_13050	COG4172	Belongs to the ABC transporter superfamily
ambt_13055	COG4172	Belongs to the ABC transporter superfamily
ambt_13060	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
ambt_13105	COG3590	peptidase
ambt_13120	COG0659	secondary active sulfate transmembrane transporter activity
ambt_13125	COG0288	reversible hydration of carbon dioxide
ambt_13130	COG0583	DNA-binding transcription factor activity
ambt_13135	COG0583	DNA-binding transcription factor activity
ambt_13150	COG0646	methionine synthase
ambt_13150	COG1410	methionine synthase
ambt_13155	COG1410	methionine synthase
ambt_13155	COG0646	methionine synthase
ambt_13170	COG0835	chemotaxis
ambt_13180	COG1192	Involved in chromosome partitioning
ambt_13185	COG2201	protein-glutamate methylesterase activity
ambt_13190	COG0643	Histidine kinase
ambt_13190	COG2198	Histidine kinase
ambt_13195	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
ambt_13210	COG0455	bacterial-type flagellum organization
ambt_13220	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ambt_13235	COG1987	bacterial-type flagellum assembly
ambt_13285	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
ambt_13290	COG1766	The M ring may be actively involved in energy transduction
ambt_13300	COG2204	response regulator
ambt_13305	COG3852	Histidine kinase
ambt_13310	COG2204	response regulator
ambt_13320	COG1086	Polysaccharide biosynthesis protein
ambt_13325	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ambt_13330	COG1083	cytidylyl-transferase
ambt_13340	COG2089	acid synthase
ambt_13355	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ambt_13375	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ambt_13395	COG2226	methyltransferase
ambt_13435	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ambt_13445	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ambt_13465	COG1256	bacterial-type flagellum assembly
ambt_13470	COG1705	Flagellar rod assembly protein muramidase FlgJ
ambt_13470	COG3951	Flagellar rod assembly protein muramidase FlgJ
ambt_13485	COG4786	Flagellar basal body rod
ambt_13490	COG4787	bacterial-type flagellum-dependent cell motility
ambt_13495	COG1749	Flagellar hook protein flgE
ambt_13500	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
ambt_13505	COG1558	bacterial-type flagellum-dependent cell motility
ambt_13510	COG1815	bacterial-type flagellum-dependent cell motility
ambt_13515	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ambt_13520	COG0835	chemotaxis
ambt_13520	COG0784	Response regulator, receiver
ambt_13560	COG2197	response regulator
ambt_13565	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ambt_13570	COG2274	protein secretion by the type I secretion system
ambt_13575	COG2885	chlorophyll binding
ambt_13585	COG2840	Smr protein MutS2
ambt_13595	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ambt_13595	COG0047	phosphoribosylformylglycinamidine synthase activity
ambt_13605	COG0590	tRNA wobble adenosine to inosine editing
ambt_13625	COG0037	tRNA processing
ambt_13630	COG0825	malonyl-CoA metabolic process
ambt_13635	COG0587	DNA-directed DNA polymerase activity
ambt_13650	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ambt_13655	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ambt_13670	COG0750	zinc metalloprotease
ambt_13675	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
ambt_13680	COG0575	Belongs to the CDS family
ambt_13685	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
ambt_13695	COG0528	UMP kinase activity
ambt_13705	COG0052	Belongs to the universal ribosomal protein uS2 family
ambt_13710	COG0024	Methionine aminopeptidase
ambt_13730	COG0564	pseudouridine synthase activity
ambt_13795	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
ambt_13795	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
ambt_13800	COG0745	RESPONSE REGULATOR receiver
ambt_13800	COG3706	GGDEF domain
ambt_13805	COG1611	Belongs to the LOG family
ambt_13820	COG0473	3-isopropylmalate dehydrogenase activity
ambt_13825	COG1555	photosystem II stabilization
ambt_13825	COG1596	polysaccharide export
ambt_13830	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ambt_13840	COG0463	Glycosyl transferase, family 2
ambt_13840	COG1216	Glycosyl transferase, family 2
ambt_13860	COG1682	transport, permease protein
ambt_13875	COG3104	oligopeptide transport
ambt_13885	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ambt_13890	COG2853	Lipoprotein
ambt_13905	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ambt_13910	COG1138	Cytochrome C-type biogenesis protein
ambt_13920	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ambt_13925	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ambt_13930	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ambt_13935	COG4133	protoheme IX ABC transporter activity
ambt_13950	COG1668	transmembrane transport
ambt_13955	COG4555	ABC transporter
ambt_13970	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
ambt_14000	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ambt_14005	COG0473	3-isopropylmalate dehydrogenase activity
ambt_14015	COG0066	3-isopropylmalate dehydratase activity
ambt_14030	COG3409	Peptidoglycan-binding domain 1 protein
ambt_14030	COG3267	Type II secretory pathway component ExeA
ambt_14040	COG0513	Belongs to the DEAD box helicase family
ambt_14050	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ambt_14080	COG1346	cytolysis
ambt_14120	COG1201	RNA secondary structure unwinding
ambt_14190	COG4667	esterase of the alpha-beta hydrolase superfamily
ambt_14205	COG5433	transposase activity
ambt_14220	COG0488	(ABC) transporter
ambt_14230	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ambt_14235	COG2971	BadF BadG BcrA BcrD
ambt_14245	COG3706	GGDEF domain
ambt_14250	COG0419	ATPase involved in DNA repair
ambt_14255	COG0420	3'-5' exonuclease activity
ambt_14265	COG1739	Uncharacterized protein family UPF0029
ambt_14280	COG1764	response to oxidative stress
ambt_14285	COG1846	Transcriptional regulator
ambt_14310	COG1272	protein, Hemolysin III
ambt_14335	COG0583	DNA-binding transcription factor activity
ambt_14345	COG0306	phosphate transporter
ambt_14355	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
ambt_14360	COG0581	inorganic phosphate transmembrane transporter activity
ambt_14365	COG0573	inorganic phosphate transmembrane transporter activity
ambt_14375	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
ambt_14380	COG0248	Ppx GppA phosphatase
ambt_14385	COG3588	fructose-bisphosphate aldolase
ambt_14390	COG0126	phosphoglycerate kinase activity
ambt_14400	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ambt_14425	COG1979	alcohol dehydrogenase
ambt_14430	COG2207	Transcriptional regulator
ambt_14440	COG2205	protein histidine kinase activity
ambt_14440	COG0784	Response regulator, receiver
ambt_14460	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ambt_14480	COG2207	Transcriptional regulator
ambt_14485	COG2801	Transposase and inactivated derivatives
ambt_14510	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
ambt_14520	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ambt_14530	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ambt_14535	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ambt_14545	COG5007	Belongs to the BolA IbaG family
ambt_14550	COG3113	response to antibiotic
ambt_14555	COG2854	intermembrane phospholipid transfer
ambt_14560	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ambt_14565	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ambt_14570	COG1127	ABC transporter
ambt_14585	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ambt_14600	COG1137	ATPase activity
ambt_14605	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
ambt_14615	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
ambt_14625	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ambt_14630	COG2239	Acts as a magnesium transporter
ambt_14660	COG2969	positive regulation of protein catabolic process
ambt_14665	COG0625	glutathione transferase activity
ambt_14670	COG2857	Cytochrome c1
ambt_14675	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
ambt_14680	COG0723	plastoquinol--plastocyanin reductase activity
ambt_14685	COG1473	amidohydrolase
ambt_14695	COG4206	TonB-dependent receptor
ambt_14705	COG1595	DNA-templated transcription, initiation
ambt_14710	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
ambt_14730	COG3956	TIGRFAM MazG family protein
ambt_14735	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ambt_14740	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
ambt_14750	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
ambt_14770	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ambt_14785	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
ambt_14790	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ambt_14795	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ambt_14800	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
ambt_14810	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
ambt_14815	COG0840	transmembrane signaling receptor activity
ambt_14820	COG0527	aspartate kinase activity
ambt_14840	COG1049	propionate catabolic process, 2-methylcitrate cycle
ambt_14845	COG2133	pyrroloquinoline quinone binding
ambt_14855	COG0318	PFAM AMP-dependent synthetase and ligase
ambt_14865	COG3437	response regulator, receiver
ambt_14870	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
ambt_14880	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
ambt_14885	COG0848	biopolymer transport protein
ambt_14890	COG0811	peptide transport
ambt_14895	COG0811	peptide transport
ambt_14925	COG5002	protein histidine kinase activity
ambt_14930	COG0745	RESPONSE REGULATOR receiver
ambt_14935	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ambt_14935	COG4191	Histidine kinase
ambt_14940	COG2974	May be involved in recombination
ambt_14945	COG1396	sequence-specific DNA binding
ambt_14950	COG3135	benzoate transporter
ambt_14965	COG0537	adenosine 5'-monophosphoramidase activity
ambt_14980	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ambt_14985	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
ambt_15005	COG1610	YqeY-like protein
ambt_15010	COG0358	DNA primase activity
ambt_15015	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ambt_15035	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ambt_15040	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ambt_15055	COG4948	Mandelate Racemase Muconate Lactonizing
ambt_15075	COG1028	Short-chain dehydrogenase reductase Sdr
ambt_15085	COG1960	acyl-CoA dehydrogenase activity
ambt_15100	COG0348	domain, Protein
ambt_15105	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
ambt_15110	COG4206	TonB-dependent receptor
ambt_15115	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ambt_15130	COG1116	anion transmembrane transporter activity
ambt_15135	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ambt_15140	COG1116	anion transmembrane transporter activity
ambt_15140	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ambt_15160	COG1648	precorrin-2 dehydrogenase activity
ambt_15160	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ambt_15170	COG0243	molybdopterin cofactor binding
ambt_15175	COG2146	nitrite reductase [NAD(P)H] activity
ambt_15180	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ambt_15185	COG0659	secondary active sulfate transmembrane transporter activity
ambt_15195	COG3707	response regulator
ambt_15205	COG0671	phosphoesterase, PA-phosphatase related
ambt_15210	COG0271	Belongs to the BolA IbaG family
ambt_15225	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ambt_15255	COG1509	lysine 2,3-aminomutase activity
ambt_15275	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ambt_15280	COG4251	negative regulation of phosphorylation
ambt_15295	COG3150	esterase
ambt_15310	COG0494	nUDIX hydrolase
ambt_15315	COG1538	Outer membrane efflux protein
ambt_15335	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ambt_15335	COG1648	precorrin-2 dehydrogenase activity
ambt_15345	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
ambt_15350	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
ambt_15355	COG0564	pseudouridine synthase activity
ambt_15375	COG5002	protein histidine kinase activity
ambt_15375	COG0784	Response regulator, receiver
ambt_15380	COG3706	GGDEF domain
ambt_15385	COG2201	protein-glutamate methylesterase activity
ambt_15390	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
ambt_15395	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
ambt_15400	COG0730	response to heat
ambt_15405	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
ambt_15410	COG0494	nUDIX hydrolase
ambt_15425	COG3025	triphosphatase activity
ambt_15430	COG4991	sh3 domain protein
ambt_15435	COG2205	protein histidine kinase activity
ambt_15440	COG0745	RESPONSE REGULATOR receiver
ambt_15445	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ambt_15460	COG0506	proline dehydrogenase activity
ambt_15460	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
ambt_15460	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
ambt_15465	COG0840	transmembrane signaling receptor activity
ambt_15475	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
ambt_15490	COG0585	pseudouridine synthase activity
ambt_15495	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
ambt_15505	COG1238	metal cluster binding
ambt_15515	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ambt_15545	COG0142	geranyltranstransferase activity
ambt_15555	COG0006	proline dipeptidase activity
ambt_15565	COG1250	3-hydroxyacyl-CoA dehydrogenase
ambt_15565	COG1024	Enoyl-CoA hydratase
ambt_15570	COG0183	Belongs to the thiolase family
ambt_15665	COG3547	Transposase (IS116 IS110 IS902 family)
ambt_15735	COG0346	lactoylglutathione lyase activity
ambt_15755	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
ambt_15760	COG3876	Protein conserved in bacteria
ambt_15780	COG1757	Na H antiporter
ambt_15795	COG1012	belongs to the aldehyde dehydrogenase family
ambt_15805	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
ambt_15815	COG3118	belongs to the thioredoxin family
ambt_15825	COG2133	pyrroloquinoline quinone binding
ambt_15830	COG0783	Belongs to the Dps family
ambt_15835	COG2847	Copper chaperone PCu(A)C
ambt_15840	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
ambt_15850	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
ambt_15855	COG0784	Response regulator, receiver
ambt_15855	COG2205	protein histidine kinase activity
ambt_15860	COG1473	amidohydrolase
ambt_15865	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
ambt_15870	COG3118	belongs to the thioredoxin family
ambt_15875	COG0513	Belongs to the DEAD box helicase family
ambt_15880	COG0248	Ppx GppA phosphatase
ambt_15890	COG3706	GGDEF domain
ambt_15895	COG0084	hydrolase, TatD family'
ambt_15905	COG0805	protein transport
ambt_15910	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ambt_15930	COG0028	Belongs to the TPP enzyme family
ambt_15945	COG0457	Tetratricopeptide repeat
ambt_15965	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
ambt_15970	COG1162	GTPase activity
ambt_15985	COG0584	glycerophosphoryl diester phosphodiesterase
ambt_15995	COG2861	carbohydrate metabolic process
ambt_16005	COG4942	peptidase
ambt_16015	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
ambt_16030	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ambt_16035	COG2267	carboxylic ester hydrolase activity
ambt_16040	COG2205	protein histidine kinase activity
ambt_16045	COG0745	RESPONSE REGULATOR receiver
ambt_16060	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
ambt_16070	COG1803	Methylglyoxal synthase
ambt_16085	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
ambt_16090	COG0137	argininosuccinate synthase activity
ambt_16100	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
ambt_16100	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ambt_16105	COG5001	Diguanylate cyclase
ambt_16105	COG3300	MHYT domain
ambt_16130	COG0625	glutathione transferase activity
ambt_16140	COG0281	malic enzyme
ambt_16145	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
ambt_16180	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
ambt_16195	COG0338	D12 class N6 adenine-specific DNA methyltransferase
ambt_16220	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
ambt_16225	COG0180	Tryptophanyl-tRNA synthetase
ambt_16240	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ambt_16245	COG3138	arginine N-succinyltransferase
ambt_16250	COG1012	belongs to the aldehyde dehydrogenase family
ambt_16275	COG2205	protein histidine kinase activity
ambt_16275	COG3437	response regulator, receiver
ambt_16275	COG4999	Histidine kinase
ambt_16275	COG3850	Histidine kinase
ambt_16290	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ambt_16300	COG0540	Belongs to the ATCase OTCase family
ambt_16315	COG2837	iron assimilation
ambt_16320	COG0405	Gamma-glutamyltransferase
ambt_16325	COG0004	ammonium transporteR
ambt_16345	COG2207	Transcriptional regulator
ambt_16350	COG2354	Protein conserved in bacteria
ambt_16365	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ambt_16375	COG2951	lytic endotransglycosylase activity
ambt_16435	COG1643	Atp-dependent helicase
ambt_16445	COG0788	formyltetrahydrofolate deformylase activity
ambt_16480	COG1519	Transferase
ambt_16485	COG0859	PFAM glycosyl transferase family 9
ambt_16490	COG0438	transferase activity, transferring glycosyl groups
ambt_16495	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ambt_16510	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
ambt_16520	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
ambt_16530	COG0089	rRNA binding
ambt_16545	COG0051	transcription antitermination factor activity, RNA binding
ambt_16570	COG1454	alcohol dehydrogenase
ambt_16620	COG2211	Major facilitator Superfamily
ambt_16630	COG0673	inositol 2-dehydrogenase activity
ambt_16635	COG1609	Transcriptional regulator
ambt_16705	COG0501	Belongs to the peptidase M48B family
ambt_16720	COG2201	protein-glutamate methylesterase activity
ambt_16725	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
ambt_16740	COG0835	chemotaxis
ambt_16745	COG2198	Histidine kinase
ambt_16745	COG0643	Histidine kinase
ambt_16750	COG0745	RESPONSE REGULATOR receiver
ambt_16820	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ambt_16835	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
ambt_16860	COG4974	Belongs to the 'phage' integrase family
ambt_16865	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ambt_17005	COG1484	DNA-dependent DNA replication
ambt_17010	COG4584	PFAM Integrase catalytic
ambt_17060	COG1194	a g-specific adenine glycosylase
ambt_17070	COG0220	tRNA (guanine-N7-)-methyltransferase activity
ambt_17080	COG0297	glycogen (starch) synthase activity
ambt_17085	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ambt_17085	COG4191	Histidine kinase
ambt_17090	COG0745	RESPONSE REGULATOR receiver
ambt_17105	COG0312	modulator of DNA gyrase
ambt_17110	COG3028	Belongs to the UPF0307 family
ambt_17120	COG0312	modulator of DNA gyrase
ambt_17125	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ambt_17135	COG1530	ribonuclease E activity
ambt_17145	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
ambt_17150	COG1792	Involved in formation and maintenance of cell shape
ambt_17155	COG1077	Cell shape determining protein MreB Mrl
ambt_17195	COG1459	type II secretion system
ambt_17200	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ambt_17210	COG3267	Type II secretory pathway component ExeA
ambt_17210	COG3409	Peptidoglycan-binding domain 1 protein
ambt_17250	COG1349	DNA-binding transcription factor activity
ambt_17275	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ambt_17325	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
ambt_17340	COG0745	RESPONSE REGULATOR receiver
ambt_17355	COG0629	single-stranded DNA binding
ambt_17370	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
ambt_17375	COG1085	galactose-1-phosphate uridylyltransferase
ambt_17395	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ambt_17400	COG2814	Major facilitator Superfamily
ambt_17405	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ambt_17430	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ambt_17440	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ambt_17445	COG0163	prenyltransferase activity
ambt_17475	COG0019	diaminopimelate decarboxylase activity
ambt_17480	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
ambt_17495	COG1011	Hydrolase
ambt_17510	COG0745	RESPONSE REGULATOR receiver
ambt_17510	COG3706	GGDEF domain
ambt_17520	COG2239	Acts as a magnesium transporter
ambt_17525	COG2050	protein possibly involved in aromatic compounds catabolism
ambt_17530	COG0514	ATP-dependent DNA helicase (RecQ)
ambt_17575	COG0629	single-stranded DNA binding
ambt_17830	COG1605	Chorismate mutase
ambt_17830	COG0077	Prephenate dehydratase
ambt_17935	COG1802	Transcriptional regulator
ambt_17940	COG0179	Fumarylacetoacetate (FAA) hydrolase
ambt_17950	COG0179	Fumarylacetoacetate (FAA) hydrolase
ambt_17955	COG3177	Filamentation induced by cAMP protein fic
ambt_17970	COG1192	Involved in chromosome partitioning
ambt_17995	COG0583	DNA-binding transcription factor activity
ambt_18055	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ambt_18105	COG3077	Addiction module antitoxin, RelB DinJ family
ambt_18110	COG2026	Addiction module toxin, RelE StbE family
ambt_18115	COG0840	transmembrane signaling receptor activity
ambt_18125	COG0625	glutathione transferase activity
ambt_18130	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
ambt_18140	COG5001	Diguanylate cyclase
ambt_18140	COG5002	protein histidine kinase activity
ambt_18145	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
ambt_18150	COG3064	Membrane
ambt_18160	COG0840	transmembrane signaling receptor activity
ambt_18170	COG0123	including yeast histone deacetylase and acetoin utilization protein
ambt_18175	COG0427	acetyl-CoA hydrolase
ambt_18185	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ambt_18190	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ambt_18205	COG2076	Multidrug Resistance protein
ambt_18225	COG3706	GGDEF domain
ambt_18245	COG0668	transmembrane transport
ambt_18260	COG2081	HI0933 family
ambt_18265	COG3842	ATPase activity
ambt_18270	COG1178	ABC-type Fe3 transport system permease component
ambt_18285	COG0678	peroxiredoxin activity
ambt_18285	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
ambt_18295	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ambt_18300	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ambt_18310	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ambt_18320	COG0194	GDP metabolic process
ambt_18330	COG0745	RESPONSE REGULATOR receiver
ambt_18330	COG3706	GGDEF domain
ambt_18335	COG0181	hydroxymethylbilane synthase activity
ambt_18345	COG2959	enzyme of heme biosynthesis
ambt_18350	COG3071	HemY protein
ambt_18360	COG1953	Uracil, thiamine, allantoin
ambt_18385	COG1309	transcriptional regulator
ambt_18390	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
ambt_18395	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
ambt_18410	COG1478	Catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives
ambt_18410	COG0778	Nitroreductase
ambt_18420	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ambt_18425	COG4771	TonB-dependent receptor
ambt_18455	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ambt_18470	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
ambt_18490	COG3106	COG3106 Predicted ATPase
ambt_18505	COG0583	DNA-binding transcription factor activity
ambt_18510	COG1960	acyl-CoA dehydrogenase activity
ambt_18520	COG0842	Transport permease protein
ambt_18525	COG0842	Transport permease protein
ambt_18525	COG1129	ABC transporter
ambt_18530	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ambt_18545	COG0583	DNA-binding transcription factor activity
ambt_18550	COG4773	Receptor
ambt_18560	COG1620	l-lactate permease
ambt_18585	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ambt_18630	COG0210	DNA helicase
ambt_18635	COG2960	long-chain fatty acid transporting porin activity
ambt_18640	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
ambt_18645	COG3161	chorismate lyase activity
ambt_18655	COG0705	Rhomboid family
ambt_18660	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ambt_18670	COG0156	8-amino-7-oxononanoate synthase activity
ambt_18690	COG0859	PFAM glycosyl transferase family 9
ambt_18695	COG3642	lipopolysaccharide core region biosynthetic process
ambt_18735	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ambt_18760	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ambt_18775	COG2234	aminopeptidase activity
ambt_18850	COG0583	DNA-binding transcription factor activity
ambt_18870	COG1216	Glycosyl transferase, family 2
ambt_18870	COG0438	transferase activity, transferring glycosyl groups
ambt_18970	COG0463	Glycosyl transferase, family 2
ambt_18970	COG1216	Glycosyl transferase, family 2
ambt_19045	COG0202	RNA polymerase activity
ambt_19070	COG0201	protein transport
ambt_19090	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
ambt_19125	COG5002	protein histidine kinase activity
ambt_19125	COG0784	Response regulator, receiver
ambt_19145	COG0557	exoribonuclease II activity
ambt_19155	COG4771	TonB-dependent receptor
ambt_19160	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
ambt_19185	COG2234	aminopeptidase activity
ambt_19205	COG1271	oxidase subunit
ambt_19210	COG1294	oxidase, subunit
ambt_19220	COG1522	sequence-specific DNA binding
ambt_19240	COG1278	Cold shock
ambt_19245	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ambt_19265	COG0339	signal peptide processing
ambt_19270	COG2201	protein-glutamate methylesterase activity
ambt_19280	COG4191	Histidine kinase
ambt_19280	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ambt_19290	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ambt_19295	COG0243	molybdopterin cofactor binding
ambt_19300	COG4946	Tricorn protease homolog
ambt_19300	COG0793	Belongs to the peptidase S41A family
ambt_19325	COG2197	response regulator
ambt_19345	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
ambt_19350	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ambt_19355	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ambt_19375	COG0281	malic enzyme
ambt_19380	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
ambt_19385	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ambt_19415	COG0456	acetyltransferase
ambt_19425	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
ambt_19430	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
ambt_19435	COG2177	Part of the ABC transporter FtsEX involved in
ambt_19440	COG2884	Cell division ATP-binding protein ftsE
ambt_19445	COG0552	protein localization to endoplasmic reticulum
ambt_19450	COG0742	ribosomal rna small subunit methyltransferase
ambt_19460	COG2095	MarC family integral membrane protein
ambt_19485	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ambt_19490	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ambt_19500	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ambt_19515	COG0076	glutamate decarboxylase activity
ambt_19530	COG0842	Transport permease protein
ambt_19535	COG1131	(ABC) transporter
ambt_19540	COG0745	RESPONSE REGULATOR receiver
ambt_19545	COG2205	protein histidine kinase activity
ambt_19550	COG4774	siderophore transport
ambt_19570	COG1253	flavin adenine dinucleotide binding
ambt_19575	COG0701	Predicted permease
ambt_19580	COG1966	Carbon starvation protein
ambt_19615	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
ambt_19620	COG0049	tRNA binding
ambt_19625	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
ambt_19630	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
ambt_19635	COG0085	RNA polymerase activity
ambt_19640	COG0222	ribosome binding
ambt_19645	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
ambt_19650	COG0081	regulation of translation
ambt_19655	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
ambt_19665	COG0250	Participates in transcription elongation, termination and antitermination
ambt_19670	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ambt_19675	COG1132	(ABC) transporter
ambt_19680	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ambt_19690	COG3590	peptidase
ambt_19700	COG0513	Belongs to the DEAD box helicase family
ambt_19705	COG0418	dihydroorotase activity
ambt_19715	COG3040	lipid binding
ambt_19720	COG4989	oxidoreductase activity
ambt_19725	COG0346	lactoylglutathione lyase activity
ambt_19735	COG0302	gtp cyclohydrolase
ambt_19740	COG2957	Belongs to the agmatine deiminase family
ambt_19745	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ambt_19755	COG1201	RNA secondary structure unwinding
ambt_19775	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ambt_19785	COG0646	methionine synthase
ambt_19785	COG1410	methionine synthase
ambt_19790	COG0625	glutathione transferase activity
ambt_19805	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
ambt_19810	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ambt_19820	COG1012	belongs to the aldehyde dehydrogenase family
ambt_19835	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
ambt_19840	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
ambt_19845	COG0330	HflC and HflK could
ambt_19850	COG0330	HflC and HflK could
ambt_19855	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ambt_19860	COG1923	regulation of RNA biosynthetic process
ambt_19865	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ambt_19880	COG0802	atpase or kinase
ambt_19885	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ambt_19885	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ambt_19900	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
ambt_19905	COG2816	NAD+ diphosphatase activity
ambt_19910	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
ambt_19915	COG0735	belongs to the Fur family
ambt_19925	COG0432	Pfam Uncharacterised protein family UPF0047
ambt_19935	COG0305	Participates in initiation and elongation during chromosome replication
ambt_19960	COG2258	MOSC domain
ambt_19990	COG5002	protein histidine kinase activity
ambt_20000	COG0840	transmembrane signaling receptor activity
ambt_20005	COG4191	Histidine kinase
ambt_20005	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ambt_20015	COG1609	Transcriptional regulator
ambt_20020	COG2211	Major facilitator Superfamily
ambt_20040	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
ambt_20045	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ambt_20050	COG4558	Periplasmic binding protein
ambt_20060	COG4206	TonB-dependent receptor
ambt_20070	COG1472	Belongs to the glycosyl hydrolase 3 family
ambt_20085	COG2855	membrane
ambt_20090	COG2175	clavaminate synthase activity
ambt_20095	COG0656	L-ascorbic acid biosynthetic process
ambt_20120	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ambt_20160	COG4771	TonB-dependent receptor
ambt_20165	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
ambt_20170	COG4988	ABC transporter
ambt_20175	COG4890	Cyd operon protein YbgT
ambt_20180	COG1294	oxidase, subunit
ambt_20200	COG2204	response regulator
ambt_20230	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
ambt_20270	COG4319	ketosteroid isomerase
ambt_20315	COG3237	CsbD-like
ambt_20335	COG1404	Belongs to the peptidase S8 family
ambt_20360	COG2267	carboxylic ester hydrolase activity
ambt_20385	COG3038	cytochrome b561
ambt_20390	COG2353	YceI-like domain
ambt_20395	COG1252	NADH dehydrogenase
ambt_20420	COG2067	long-chain fatty acid transport protein
ambt_20430	COG2130	NADP-dependent
ambt_20435	COG2203	Gaf domain
ambt_20435	COG3706	GGDEF domain
ambt_20435	COG4251	negative regulation of phosphorylation
ambt_20435	COG5001	Diguanylate cyclase
ambt_20455	COG3293	Transposase
ambt_20460	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ambt_20470	COG4181	ATPase activity
ambt_20490	COG0523	cobalamin synthesis protein
ambt_20505	COG4771	TonB-dependent receptor
ambt_20535	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ambt_20555	COG0697	spore germination
ambt_20560	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ambt_20575	COG1166	arginine decarboxylase activity
ambt_20585	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
ambt_20590	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ambt_20595	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ambt_20610	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ambt_20625	COG0830	nickel cation binding
ambt_20650	COG0829	nickel cation binding
ambt_20655	COG0410	ABC transporter
ambt_20690	COG0745	RESPONSE REGULATOR receiver
ambt_20695	COG0523	cobalamin synthesis protein
ambt_20875	COG0084	hydrolase, TatD family'
ambt_20885	COG0786	glutamate:sodium symporter activity
ambt_20900	COG1538	Outer membrane efflux protein
ambt_20990	COG1475	DNA binding
ambt_21000	COG4679	PFAM Phage derived protein Gp49-like (DUF891)
ambt_21005	COG0582	viral genome integration into host DNA
ambt_21025	COG4232	protein-disulfide reductase activity
ambt_21030	COG0739	heme binding
ambt_21035	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
ambt_21040	COG0511	ligase activity, forming carbon-carbon bonds
ambt_21045	COG0439	Biotin carboxylase
ambt_21065	COG2176	DNA-directed DNA polymerase activity
ambt_21085	COG0154	amidase activity
ambt_21110	COG1120	ATPase activity
ambt_21120	COG3038	cytochrome b561
ambt_21130	COG0667	Aldo Keto reductase
ambt_21135	COG1028	Short-chain dehydrogenase reductase Sdr
ambt_21140	COG3384	dioxygenase
ambt_21145	COG0583	DNA-binding transcription factor activity
ambt_21150	COG1484	DNA-dependent DNA replication
ambt_21155	COG4584	PFAM Integrase catalytic
ambt_21175	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ambt_21180	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ambt_21195	COG0151	Belongs to the GarS family
ambt_21205	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ambt_21210	COG3954	Phosphoribulokinase
ambt_21220	COG2963	transposase activity
ambt_21225	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ambt_21235	COG1309	transcriptional regulator
ambt_21250	COG0745	RESPONSE REGULATOR receiver
ambt_21260	COG0318	PFAM AMP-dependent synthetase and ligase
ambt_21265	COG5433	transposase activity
ambt_21285	COG5433	transposase activity
ambt_21345	COG0745	RESPONSE REGULATOR receiver
ambt_21365	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ambt_21375	COG3031	protein transport across the cell outer membrane
ambt_21385	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ambt_21390	COG1459	type II secretion system
ambt_21395	COG2165	general secretion pathway protein
ambt_21400	COG2165	general secretion pathway protein
ambt_21405	COG2165	general secretion pathway protein
ambt_21410	COG4795	General secretion pathway protein
ambt_21425	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
ambt_21435	COG1234	tRNA 3'-trailer cleavage
ambt_21440	COG1012	belongs to the aldehyde dehydrogenase family
ambt_21445	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
ambt_21450	COG1011	Hydrolase
ambt_21455	COG0494	nUDIX hydrolase
ambt_21460	COG1218	3'(2'),5'-bisphosphate nucleotidase
ambt_21475	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
ambt_21490	COG3089	Belongs to the UPF0270 family
ambt_21495	COG0429	hydrolase of the alpha beta-hydrolase fold
ambt_21505	COG0488	(ABC) transporter
ambt_21510	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
ambt_21530	COG0545	Peptidyl-prolyl cis-trans isomerase
ambt_21540	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ambt_21570	COG1484	DNA-dependent DNA replication
ambt_21575	COG4584	PFAM Integrase catalytic
ambt_21595	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ambt_21620	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ambt_21625	COG2183	response to ionizing radiation
ambt_21640	COG0596	Alpha beta hydrolase
ambt_21645	COG1040	competence protein
ambt_21665	COG1794	racemase activity, acting on amino acids and derivatives
ambt_21675	COG2226	methyltransferase
ambt_21680	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
ambt_21685	COG0534	Mate efflux family protein
ambt_21700	COG1999	signal sequence binding
ambt_21705	COG0109	protoheme IX farnesyltransferase activity
ambt_21710	COG1612	heme a metabolic process
ambt_21735	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
ambt_21740	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ambt_21745	COG1565	acr, cog1565
ambt_21745	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ambt_21775	COG0129	dihydroxy-acid dehydratase activity
ambt_21780	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ambt_21790	COG0606	chelatase, subunit chli
ambt_21795	COG0583	DNA-binding transcription factor activity
ambt_21805	COG2814	Major facilitator Superfamily
ambt_21810	COG1073	alpha beta
ambt_21815	COG0729	surface antigen
ambt_21820	COG2911	Protein conserved in bacteria
ambt_21845	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ambt_21855	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
ambt_21875	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ambt_21930	COG0425	Belongs to the sulfur carrier protein TusA family
ambt_21945	COG1561	YicC-like family, N-terminal region
ambt_22095	COG2211	Major facilitator Superfamily
ambt_22100	COG1609	Transcriptional regulator
ambt_22115	COG2199	diguanylate cyclase activity
ambt_22115	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
ambt_22130	COG0625	glutathione transferase activity
ambt_22145	COG0355	proton-transporting ATP synthase activity, rotational mechanism
ambt_22165	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
ambt_22170	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
ambt_22190	COG1475	DNA binding
ambt_22195	COG1192	Involved in chromosome partitioning
ambt_22220	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ambt_22225	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
ambt_22235	COG0706	membrane insertase activity
ambt_22240	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
ambt_22245	COG0594	ribonuclease P activity