ambt_00005 SM00382 ATPases associated with a variety of cellular activities ambt_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain ambt_00010 SM00480 DNA polymerase III beta subunit ambt_00020 SM00387 Histidine kinase-like ATPases ambt_00020 SM00433 TopoisomeraseII ambt_00030 SM00836 DALR anticodon binding domain ambt_00065 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs ambt_00065 SM00474 3'-5' exonuclease ambt_00065 SM00475 5'-3' exonuclease ambt_00065 SM00482 DNA polymerase A domain ambt_00110 SM00257 Lysin motif ambt_00230 SM01060 ambt_00230 ambt_00245 SM01060 ambt_00245 ambt_00250 SM00248 ankyrin repeats ambt_00255 SM01358 ambt_00255 ambt_00280 SM00421 helix_turn_helix, Lux Regulon ambt_00280 SM00448 cheY-homologous receiver domain ambt_00310 SM00387 Histidine kinase-like ATPases ambt_00310 SM00388 His Kinase A (phosphoacceptor) domain ambt_00310 SM00448 cheY-homologous receiver domain ambt_00325 SM00116 Domain in cystathionine beta-synthase and other proteins. ambt_00330 SM00479 ambt_00330 ambt_00335 SM00267 diguanylate cyclase ambt_00335 SM00448 cheY-homologous receiver domain ambt_00345 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. ambt_00350 SM00028 Tetratricopeptide repeats ambt_00455 SM00900 ambt_00455 ambt_00495 SM00849 Metallo-beta-lactamase superfamily ambt_00525 SM00849 Metallo-beta-lactamase superfamily ambt_00540 SM00052 Putative diguanylate phosphodiesterase ambt_00540 SM00267 diguanylate cyclase ambt_00670 SM00563 Phosphate acyltransferases ambt_00675 SM00563 Phosphate acyltransferases ambt_00685 SM00052 Putative diguanylate phosphodiesterase ambt_00685 SM00267 diguanylate cyclase ambt_00690 SM00173 Ras subfamily of RAS small GTPases ambt_00690 SM00175 Rab subfamily of small GTPases ambt_00765 SM00052 Putative diguanylate phosphodiesterase ambt_00765 SM00267 diguanylate cyclase ambt_00765 SM00448 cheY-homologous receiver domain ambt_00770 SM00986 Uracil DNA glycosylase superfamily ambt_00770 SM00987 UreE urease accessory protein, C-terminal domain ambt_00815 SM00360 RNA recognition motif ambt_00830 SM00486 DNA polymerase type-B family ambt_00835 SM00849 Metallo-beta-lactamase superfamily ambt_00840 SM00387 Histidine kinase-like ATPases ambt_00850 SM00448 cheY-homologous receiver domain ambt_00880 SM00155 Phospholipase D. Active site motifs. ambt_00885 SM00267 diguanylate cyclase ambt_00915 SM00345 helix_turn_helix gluconate operon transcriptional repressor ambt_00915 SM00895 ambt_00915 ambt_00950 SM00052 Putative diguanylate phosphodiesterase ambt_00950 SM00267 diguanylate cyclase ambt_00950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_00955 SM00487 DEAD-like helicases superfamily ambt_00955 SM00490 helicase superfamily c-terminal domain ambt_00960 SM00240 Forkhead associated domain ambt_00960 SM00382 ATPases associated with a variety of cellular activities ambt_00965 SM00240 Forkhead associated domain ambt_00970 SM00331 Sigma factor PP2C-like phosphatases ambt_00970 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain ambt_00975 SM00220 Serine/Threonine protein kinases, catalytic domain ambt_00990 SM00240 Forkhead associated domain ambt_01000 SM00240 Forkhead associated domain ambt_01005 SM00331 Sigma factor PP2C-like phosphatases ambt_01005 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain ambt_01010 SM00240 Forkhead associated domain ambt_01080 SM00345 helix_turn_helix gluconate operon transcriptional repressor ambt_01080 SM00895 ambt_01080 ambt_01095 SM00421 helix_turn_helix, Lux Regulon ambt_01095 SM00448 cheY-homologous receiver domain ambt_01105 SM00900 ambt_01105 ambt_01110 SM00897 FIST N domain ambt_01110 SM01204 ambt_01110 ambt_01115 SM00091 PAS domain ambt_01115 SM00387 Histidine kinase-like ATPases ambt_01115 SM00388 His Kinase A (phosphoacceptor) domain ambt_01115 SM00448 cheY-homologous receiver domain ambt_01120 SM00421 helix_turn_helix, Lux Regulon ambt_01120 SM00448 cheY-homologous receiver domain ambt_01150 SM00729 Elongator protein 3, MiaB family, Radical SAM ambt_01180 SM00382 ATPases associated with a variety of cellular activities ambt_01200 SM00564 beta-propeller repeat ambt_01215 SM00267 diguanylate cyclase ambt_01220 SM00267 diguanylate cyclase ambt_01250 SM00382 ATPases associated with a variety of cellular activities ambt_01315 SM00996 S-adenosyl-L-homocysteine hydrolase ambt_01315 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ambt_01320 SM00267 diguanylate cyclase ambt_01345 SM00028 Tetratricopeptide repeats ambt_01430 SM00387 Histidine kinase-like ATPases ambt_01430 SM00388 His Kinase A (phosphoacceptor) domain ambt_01430 SM00448 cheY-homologous receiver domain ambt_01430 SM01358 ambt_01430 ambt_01445 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ambt_01445 SM00091 PAS domain ambt_01445 SM00267 diguanylate cyclase ambt_01460 SM00563 Phosphate acyltransferases ambt_01465 SM00073 Histidine Phosphotransfer domain ambt_01470 SM00382 ATPases associated with a variety of cellular activities ambt_01470 SM00448 cheY-homologous receiver domain ambt_01475 SM00091 PAS domain ambt_01475 SM00387 Histidine kinase-like ATPases ambt_01475 SM00388 His Kinase A (phosphoacceptor) domain ambt_01485 SM01230 ambt_01485 ambt_01495 SM00448 cheY-homologous receiver domain ambt_01645 SM00450 Rhodanese Homology Domain ambt_01675 SM00530 Helix-turn-helix XRE-family like proteins ambt_01695 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ambt_01695 SM00091 PAS domain ambt_01695 SM00387 Histidine kinase-like ATPases ambt_01695 SM00388 His Kinase A (phosphoacceptor) domain ambt_01695 SM00448 cheY-homologous receiver domain ambt_01710 SM00267 diguanylate cyclase ambt_01710 SM00448 cheY-homologous receiver domain ambt_01735 SM00345 helix_turn_helix gluconate operon transcriptional repressor ambt_01735 SM00895 ambt_01735 ambt_01745 SM00421 helix_turn_helix, Lux Regulon ambt_01745 SM00448 cheY-homologous receiver domain ambt_01880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_01880 SM00387 Histidine kinase-like ATPases ambt_01880 SM00388 His Kinase A (phosphoacceptor) domain ambt_01885 SM00448 cheY-homologous receiver domain ambt_01885 SM00862 Transcriptional regulatory protein, C terminal ambt_01895 SM00448 cheY-homologous receiver domain ambt_01910 SM00226 Low molecular weight phosphatase family ambt_01915 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ambt_01935 SM00421 helix_turn_helix, Lux Regulon ambt_01935 SM00448 cheY-homologous receiver domain ambt_01940 SM00829 Enoylreductase ambt_01965 SM00986 Uracil DNA glycosylase superfamily ambt_01965 SM00987 UreE urease accessory protein, C-terminal domain ambt_02045 SM00382 ATPases associated with a variety of cellular activities ambt_02055 SM00732 Likely ribonuclease with RNase H fold. ambt_02100 SM00387 Histidine kinase-like ATPases ambt_02105 SM00382 ATPases associated with a variety of cellular activities ambt_02105 SM00448 cheY-homologous receiver domain ambt_02115 SM00028 Tetratricopeptide repeats ambt_02115 SM00267 diguanylate cyclase ambt_02225 SM00842 Cell division protein FtsA ambt_02230 SM00864 Tubulin/FtsZ family, GTPase domain ambt_02230 SM00865 Tubulin/FtsZ family, C-terminal domain ambt_02245 SM00957 SecA DEAD-like domain ambt_02245 SM00958 SecA preprotein cross-linking domain ambt_02300 SM00644 ambt_02300 ambt_02310 SM00345 helix_turn_helix gluconate operon transcriptional repressor ambt_02310 SM00895 ambt_02310 ambt_02400 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ambt_02400 SM00387 Histidine kinase-like ATPases ambt_02400 SM00388 His Kinase A (phosphoacceptor) domain ambt_02400 SM00448 cheY-homologous receiver domain ambt_02420 SM01011 Aminopeptidase P, N-terminal domain ambt_02580 SM00327 von Willebrand factor (vWF) type A domain ambt_02590 SM00028 Tetratricopeptide repeats ambt_02605 SM00487 DEAD-like helicases superfamily ambt_02605 SM00490 helicase superfamily c-terminal domain ambt_02620 SM00342 helix_turn_helix, arabinose operon control protein ambt_02640 SM00090 RIO-like kinase ambt_02650 SM00382 ATPases associated with a variety of cellular activities ambt_02660 SM00382 ATPases associated with a variety of cellular activities ambt_02660 SM00448 cheY-homologous receiver domain ambt_02665 SM00387 Histidine kinase-like ATPases ambt_02665 SM00388 His Kinase A (phosphoacceptor) domain ambt_02685 SM00642 Alpha-amylase domain ambt_02710 SM00116 Domain in cystathionine beta-synthase and other proteins. ambt_02745 SM00345 helix_turn_helix gluconate operon transcriptional repressor ambt_02760 SM00862 Transcriptional regulatory protein, C terminal ambt_02780 SM00271 DnaJ molecular chaperone homology domain ambt_02805 SM01322 ambt_02805 ambt_02810 SM00487 DEAD-like helicases superfamily ambt_02810 SM00490 helicase superfamily c-terminal domain ambt_02825 SM00347 helix_turn_helix multiple antibiotic resistance protein ambt_03030 SM00642 Alpha-amylase domain ambt_03100 SM00267 diguanylate cyclase ambt_03105 SM00028 Tetratricopeptide repeats ambt_03180 SM01126 ambt_03180 ambt_03230 SM00448 cheY-homologous receiver domain ambt_03230 SM00850 LytTr DNA-binding domain ambt_03255 SM00060 Fibronectin type 3 domain ambt_03255 SM00631 ambt_03255 ambt_03340 SM00822 ambt_03340 ambt_03375 SM00220 Serine/Threonine protein kinases, catalytic domain ambt_03380 SM00342 helix_turn_helix, arabinose operon control protein ambt_03385 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins ambt_03410 SM00967 RNA 2'-O ribose methyltransferase substrate binding ambt_03425 SM00460 Transglutaminase/protease-like homologues ambt_03455 SM00354 helix_turn _helix lactose operon repressor ambt_03545 SM00382 ATPases associated with a variety of cellular activities ambt_03730 SM00260 Two component signalling adaptor domain ambt_03730 SM00448 cheY-homologous receiver domain ambt_03735 SM00098 Alkaline phosphatase homologues ambt_03805 SM01323 ambt_03805 ambt_03830 SM00052 Putative diguanylate phosphodiesterase ambt_03830 SM00267 diguanylate cyclase ambt_03830 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_03835 SM00850 LytTr DNA-binding domain ambt_03920 SM00382 ATPases associated with a variety of cellular activities ambt_03950 SM00562 ambt_03950 ambt_03960 SM00028 Tetratricopeptide repeats ambt_03960 SM00257 Lysin motif ambt_03965 SM00530 Helix-turn-helix XRE-family like proteins ambt_03985 SM00564 beta-propeller repeat ambt_03990 SM00382 ATPases associated with a variety of cellular activities ambt_04005 SM00116 Domain in cystathionine beta-synthase and other proteins. ambt_04005 SM01240 ambt_04005 ambt_04015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_04065 SM00382 ATPases associated with a variety of cellular activities ambt_04065 SM00994 ClpX C4-type zinc finger ambt_04065 SM01086 C-terminal, D2-small domain, of ClpB protein ambt_04070 SM00382 ATPases associated with a variety of cellular activities ambt_04070 SM00464 Found in ATP-dependent protease La (LON) ambt_04075 SM00411 bacterial (prokaryotic) histone like domain ambt_04090 SM00563 Phosphate acyltransferases ambt_04135 SM00904 Riboflavin kinase ambt_04220 SM00938 Nitrogen regulatory protein P-II ambt_04280 SM00838 Elongation factor G C-terminus ambt_04290 SM00358 Double-stranded RNA binding motif ambt_04290 SM00535 Ribonuclease III family ambt_04325 SM00382 ATPases associated with a variety of cellular activities ambt_04335 SM00382 ATPases associated with a variety of cellular activities ambt_04390 SM00861 Transketolase, pyrimidine binding domain ambt_04460 SM00363 S4 RNA-binding domain ambt_04470 SM00382 ATPases associated with a variety of cellular activities ambt_04470 SM01086 C-terminal, D2-small domain, of ClpB protein ambt_04475 SM00028 Tetratricopeptide repeats ambt_04505 SM00091 PAS domain ambt_04505 SM00267 diguanylate cyclase ambt_04525 SM00862 Transcriptional regulatory protein, C terminal ambt_04550 SM00382 ATPases associated with a variety of cellular activities ambt_04580 SM00493 ambt_04580 ambt_04585 SM00387 Histidine kinase-like ATPases ambt_04625 SM00530 Helix-turn-helix XRE-family like proteins ambt_04730 SM00642 Alpha-amylase domain ambt_04735 SM00487 DEAD-like helicases superfamily ambt_04735 SM00488 ambt_04735 ambt_04735 SM00491 ambt_04735 ambt_04765 SM00341 Helicase and RNase D C-terminal ambt_04765 SM00474 3'-5' exonuclease ambt_04805 SM00345 helix_turn_helix gluconate operon transcriptional repressor ambt_04900 SM00822 ambt_04900 ambt_04905 SM01236 ambt_04905 ambt_04950 SM00387 Histidine kinase-like ATPases ambt_04950 SM00388 His Kinase A (phosphoacceptor) domain ambt_04955 SM00448 cheY-homologous receiver domain ambt_04955 SM00862 Transcriptional regulatory protein, C terminal ambt_05025 SM00267 diguanylate cyclase ambt_05030 SM00825 Beta-ketoacyl synthase ambt_05035 SM00100 Cyclic nucleotide-monophosphate binding domain ambt_05035 SM00419 helix_turn_helix, cAMP Regulatory protein ambt_05040 SM01007 Class II Aldolase and Adducin N-terminal domain ambt_05050 SM00859 Semialdehyde dehydrogenase, NAD binding domain ambt_05105 SM00862 Transcriptional regulatory protein, C terminal ambt_05120 SM00829 Enoylreductase ambt_05135 SM01092 CO dehydrogenase flavoprotein C-terminal domain ambt_05140 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ambt_05150 SM01321 ambt_05150 ambt_05175 SM00098 Alkaline phosphatase homologues ambt_05180 SM00098 Alkaline phosphatase homologues ambt_05195 SM00840 ambt_05195 ambt_05210 SM00257 Lysin motif ambt_05215 SM00849 Metallo-beta-lactamase superfamily ambt_05270 SM00530 Helix-turn-helix XRE-family like proteins ambt_05435 SM00382 ATPases associated with a variety of cellular activities ambt_05455 SM00244 prohibitin homologues ambt_05475 SM01060 ambt_05475 ambt_05490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_05490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_05555 SM00387 Histidine kinase-like ATPases ambt_05555 SM00388 His Kinase A (phosphoacceptor) domain ambt_05560 SM00448 cheY-homologous receiver domain ambt_05560 SM00862 Transcriptional regulatory protein, C terminal ambt_05570 SM00267 diguanylate cyclase ambt_05615 SM00052 Putative diguanylate phosphodiesterase ambt_05615 SM00267 diguanylate cyclase ambt_05640 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ambt_05645 SM00354 helix_turn _helix lactose operon repressor ambt_05720 SM00387 Histidine kinase-like ATPases ambt_05720 SM00388 His Kinase A (phosphoacceptor) domain ambt_05720 SM00448 cheY-homologous receiver domain ambt_05750 SM00448 cheY-homologous receiver domain ambt_05750 SM00862 Transcriptional regulatory protein, C terminal ambt_05755 SM00387 Histidine kinase-like ATPases ambt_05755 SM00388 His Kinase A (phosphoacceptor) domain ambt_05785 SM00749 bacterial OsmY and nodulation domain ambt_05845 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ambt_05855 SM00642 Alpha-amylase domain ambt_05860 SM00642 Alpha-amylase domain ambt_05865 SM01350 ambt_05865 ambt_05880 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ambt_05885 SM00631 ambt_05885 ambt_05950 SM00387 Histidine kinase-like ATPases ambt_05950 SM00388 His Kinase A (phosphoacceptor) domain ambt_05950 SM00448 cheY-homologous receiver domain ambt_05955 SM00448 cheY-homologous receiver domain ambt_05960 SM00387 Histidine kinase-like ATPases ambt_05960 SM00388 His Kinase A (phosphoacceptor) domain ambt_05970 SM00382 ATPases associated with a variety of cellular activities ambt_05970 SM00448 cheY-homologous receiver domain ambt_05990 SM00450 Rhodanese Homology Domain ambt_05995 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ambt_06035 SM00849 Metallo-beta-lactamase superfamily ambt_06040 SM00052 Putative diguanylate phosphodiesterase ambt_06040 SM00267 diguanylate cyclase ambt_06115 SM00387 Histidine kinase-like ATPases ambt_06115 SM00388 His Kinase A (phosphoacceptor) domain ambt_06115 SM00448 cheY-homologous receiver domain ambt_06355 SM00894 Excalibur calcium-binding domain ambt_06470 SM00852 Probable molybdopterin binding domain ambt_06500 SM00382 ATPases associated with a variety of cellular activities ambt_06505 SM00729 Elongator protein 3, MiaB family, Radical SAM ambt_06535 SM00855 Phosphoglycerate mutase family ambt_06550 SM00829 Enoylreductase ambt_06670 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ambt_06670 SM00091 PAS domain ambt_06670 SM00387 Histidine kinase-like ATPases ambt_06670 SM00388 His Kinase A (phosphoacceptor) domain ambt_06670 SM00448 cheY-homologous receiver domain ambt_06675 SM00448 cheY-homologous receiver domain ambt_06675 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ambt_06685 SM00316 Ribosomal protein S1-like RNA-binding domain ambt_06705 SM01387 ambt_06705 ambt_06720 SM00267 diguanylate cyclase ambt_06740 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. ambt_06745 SM00028 Tetratricopeptide repeats ambt_06745 SM00448 cheY-homologous receiver domain ambt_06795 SM00729 Elongator protein 3, MiaB family, Radical SAM ambt_06840 SM00382 ATPases associated with a variety of cellular activities ambt_06860 SM00267 diguanylate cyclase ambt_06865 SM00829 Enoylreductase ambt_07040 SM00347 helix_turn_helix multiple antibiotic resistance protein ambt_07055 SM00028 Tetratricopeptide repeats ambt_07100 SM00382 ATPases associated with a variety of cellular activities ambt_07155 SM00028 Tetratricopeptide repeats ambt_07175 SM00771 ZipA, C-terminal domain (FtsZ-binding) ambt_07180 SM00532 Ligase N family ambt_07185 SM00532 Ligase N family ambt_07190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_07190 SM00387 Histidine kinase-like ATPases ambt_07190 SM00388 His Kinase A (phosphoacceptor) domain ambt_07195 SM00448 cheY-homologous receiver domain ambt_07195 SM00862 Transcriptional regulatory protein, C terminal ambt_07335 SM00422 helix_turn_helix, mercury resistance ambt_07385 SM00530 Helix-turn-helix XRE-family like proteins ambt_07465 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ambt_07465 SM00292 breast cancer carboxy-terminal domain ambt_07465 SM00532 Ligase N family ambt_07475 SM00849 Metallo-beta-lactamase superfamily ambt_07480 SM00382 ATPases associated with a variety of cellular activities ambt_07510 SM00729 Elongator protein 3, MiaB family, Radical SAM ambt_07575 SM00861 Transketolase, pyrimidine binding domain ambt_07590 SM00881 CoA binding domain ambt_07650 SM00642 Alpha-amylase domain ambt_07655 SM00642 Alpha-amylase domain ambt_07665 SM00642 Alpha-amylase domain ambt_07670 SM00354 helix_turn _helix lactose operon repressor ambt_07745 SM00448 cheY-homologous receiver domain ambt_07795 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ambt_07820 SM00448 cheY-homologous receiver domain ambt_07820 SM00850 LytTr DNA-binding domain ambt_07835 SM00028 Tetratricopeptide repeats ambt_07835 SM00448 cheY-homologous receiver domain ambt_07845 SM00450 Rhodanese Homology Domain ambt_07850 SM00054 EF-hand, calcium binding motif ambt_07855 SM00363 S4 RNA-binding domain ambt_07900 SM00487 DEAD-like helicases superfamily ambt_07900 SM00490 helicase superfamily c-terminal domain ambt_07905 SM00882 Coenzyme A transferase ambt_07910 SM00882 Coenzyme A transferase ambt_07925 SM00387 Histidine kinase-like ATPases ambt_07970 SM00861 Transketolase, pyrimidine binding domain ambt_07985 SM00220 Serine/Threonine protein kinases, catalytic domain ambt_08010 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ambt_08020 SM00945 ProQ/FINO family ambt_08025 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ambt_08025 SM00245 tail specific protease ambt_08080 SM00981 ambt_08080 ambt_08090 SM00382 ATPases associated with a variety of cellular activities ambt_08270 SM00100 Cyclic nucleotide-monophosphate binding domain ambt_08270 SM00419 helix_turn_helix, cAMP Regulatory protein ambt_08295 SM00047 Lysozyme subfamily 2 ambt_08315 SM00450 Rhodanese Homology Domain ambt_08325 SM01144 ambt_08325 ambt_08335 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ambt_08335 SM00465 GIY-YIG type nucleases (URI domain) ambt_08340 SM00421 helix_turn_helix, Lux Regulon ambt_08340 SM00448 cheY-homologous receiver domain ambt_08370 SM00347 helix_turn_helix multiple antibiotic resistance protein ambt_08385 SM00388 His Kinase A (phosphoacceptor) domain ambt_08390 SM00448 cheY-homologous receiver domain ambt_08390 SM00862 Transcriptional regulatory protein, C terminal ambt_08395 SM00245 tail specific protease ambt_08460 SM00382 ATPases associated with a variety of cellular activities ambt_08470 SM00843 ambt_08470 ambt_08475 SM00344 helix_turn_helix ASNC type ambt_08480 SM01002 Alanine dehydrogenase/PNT, C-terminal domain ambt_08480 SM01003 Alanine dehydrogenase/PNT, N-terminal domain ambt_08485 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family ambt_08490 SM00028 Tetratricopeptide repeats ambt_08505 SM00411 bacterial (prokaryotic) histone like domain ambt_08510 SM00316 Ribosomal protein S1-like RNA-binding domain ambt_08530 SM00434 DNA Topoisomerase IV ambt_08555 SM00387 Histidine kinase-like ATPases ambt_08555 SM00388 His Kinase A (phosphoacceptor) domain ambt_08560 SM00448 cheY-homologous receiver domain ambt_08560 SM00862 Transcriptional regulatory protein, C terminal ambt_08655 SM00422 helix_turn_helix, mercury resistance ambt_08795 SM00450 Rhodanese Homology Domain ambt_08805 SM00382 ATPases associated with a variety of cellular activities ambt_08845 SM01130 ambt_08845 ambt_08935 SM00421 helix_turn_helix, Lux Regulon ambt_08935 SM00448 cheY-homologous receiver domain ambt_08965 SM00642 Alpha-amylase domain ambt_08970 SM00852 Probable molybdopterin binding domain ambt_08990 SM00382 ATPases associated with a variety of cellular activities ambt_09065 SM00563 Phosphate acyltransferases ambt_09100 SM00342 helix_turn_helix, arabinose operon control protein ambt_09130 SM00893 Electron transfer flavoprotein domain ambt_09135 SM00893 Electron transfer flavoprotein domain ambt_09145 SM00528 Domain in histone-like proteins of HNS family ambt_09165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_09165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_09195 SM00354 helix_turn _helix lactose operon repressor ambt_09205 SM00797 Allophanate hydrolase subunit 2 ambt_09210 SM00796 Allophanate hydrolase subunit 1 ambt_09260 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ambt_09310 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ambt_09390 SM00382 ATPases associated with a variety of cellular activities ambt_09400 SM00316 Ribosomal protein S1-like RNA-binding domain ambt_09400 SM00322 K homology RNA-binding domain ambt_09405 SM00507 HNH nucleases ambt_09450 SM00046 Diacylglycerol kinase catalytic domain (presumed) ambt_09450 SM00195 Dual specificity phosphatase, catalytic domain ambt_09465 SM00052 Putative diguanylate phosphodiesterase ambt_09465 SM00267 diguanylate cyclase ambt_09465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_09490 SM00382 ATPases associated with a variety of cellular activities ambt_09500 SM01103 ambt_09500 ambt_09560 SM00936 Penicillin-binding protein 5, C-terminal domain ambt_09575 SM00729 Elongator protein 3, MiaB family, Radical SAM ambt_09585 SM00870 ambt_09585 ambt_09645 SM00316 Ribosomal protein S1-like RNA-binding domain ambt_09655 SM00382 ATPases associated with a variety of cellular activities ambt_09655 SM01086 C-terminal, D2-small domain, of ClpB protein ambt_09665 SM00357 Cold shock protein domain ambt_09695 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain ambt_09700 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. ambt_09810 SM00710 Parallel beta-helix repeats ambt_09840 SM00354 helix_turn _helix lactose operon repressor ambt_09860 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ambt_09935 SM00267 diguanylate cyclase ambt_09975 SM00825 Beta-ketoacyl synthase ambt_09985 SM00822 ambt_09985 ambt_09990 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ambt_10025 SM00363 S4 RNA-binding domain ambt_10030 SM00316 Ribosomal protein S1-like RNA-binding domain ambt_10120 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain ambt_10120 SM00437 Bacterial DNA topoisomerase I DNA-binding domain ambt_10120 SM00493 ambt_10120 ambt_10130 SM00634 Bacterial Ig-like domain (group 1) ambt_10145 SM00382 ATPases associated with a variety of cellular activities ambt_10150 SM00052 Putative diguanylate phosphodiesterase ambt_10160 SM00479 ambt_10160 ambt_10170 SM00829 Enoylreductase ambt_10180 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase ambt_10195 SM00382 ATPases associated with a variety of cellular activities ambt_10195 SM00487 DEAD-like helicases superfamily ambt_10195 SM00490 helicase superfamily c-terminal domain ambt_10195 SM00847 Helicase associated domain (HA2) Add an annotation ambt_10205 SM00342 helix_turn_helix, arabinose operon control protein ambt_10210 SM00267 diguanylate cyclase ambt_10230 SM00116 Domain in cystathionine beta-synthase and other proteins. ambt_10235 SM00387 Histidine kinase-like ATPases ambt_10235 SM00388 His Kinase A (phosphoacceptor) domain ambt_10235 SM00448 cheY-homologous receiver domain ambt_10255 SM00479 ambt_10255 ambt_10265 SM00062 Bacterial periplasmic substrate-binding proteins ambt_10265 SM00267 diguanylate cyclase ambt_10275 SM00422 helix_turn_helix, mercury resistance ambt_10295 SM00878 Biotin carboxylase C-terminal domain ambt_10315 SM00052 Putative diguanylate phosphodiesterase ambt_10315 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ambt_10315 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ambt_10315 SM00091 PAS domain ambt_10315 SM00267 diguanylate cyclase ambt_10405 SM00487 DEAD-like helicases superfamily ambt_10405 SM00490 helicase superfamily c-terminal domain ambt_10405 SM00982 ambt_10405 ambt_10405 SM01058 CarD-like/TRCF domain ambt_10455 SM00411 bacterial (prokaryotic) histone like domain ambt_10460 SM00873 B3/4 domain ambt_10460 SM00874 tRNA synthetase B5 domain ambt_10460 SM00896 Ferredoxin-fold anticodon binding domain ambt_10535 SM00710 Parallel beta-helix repeats ambt_10630 SM00052 Putative diguanylate phosphodiesterase ambt_10630 SM00267 diguanylate cyclase ambt_10700 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ambt_10790 SM00387 Histidine kinase-like ATPases ambt_10790 SM00388 His Kinase A (phosphoacceptor) domain ambt_10790 SM00448 cheY-homologous receiver domain ambt_10795 SM00267 diguanylate cyclase ambt_10795 SM00448 cheY-homologous receiver domain ambt_10800 SM00052 Putative diguanylate phosphodiesterase ambt_10800 SM00091 PAS domain ambt_10800 SM00267 diguanylate cyclase ambt_10800 SM00448 cheY-homologous receiver domain ambt_10835 SM01092 CO dehydrogenase flavoprotein C-terminal domain ambt_10840 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ambt_10870 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ambt_10870 SM00091 PAS domain ambt_10870 SM00267 diguanylate cyclase ambt_10875 SM00028 Tetratricopeptide repeats ambt_10875 SM00267 diguanylate cyclase ambt_11060 SM00052 Putative diguanylate phosphodiesterase ambt_11060 SM00267 diguanylate cyclase ambt_11090 SM00460 Transglutaminase/protease-like homologues ambt_11100 SM00331 Sigma factor PP2C-like phosphatases ambt_11100 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain ambt_11105 SM01116 ambt_11105 ambt_11110 SM00838 Elongation factor G C-terminus ambt_11110 SM00889 Elongation factor G, domain IV ambt_11160 SM00937 ambt_11160 ambt_11180 SM01400 ambt_11180 ambt_11185 SM00052 Putative diguanylate phosphodiesterase ambt_11185 SM00267 diguanylate cyclase ambt_11195 SM00829 Enoylreductase ambt_11230 SM00903 Flavin reductase like domain ambt_11400 SM00729 Elongator protein 3, MiaB family, Radical SAM ambt_11415 SM00116 Domain in cystathionine beta-synthase and other proteins. ambt_11415 SM01091 Transporter associated domain ambt_11460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_11460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_11470 SM00851 MGS-like domain ambt_11470 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ambt_11475 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain ambt_11500 SM00052 Putative diguanylate phosphodiesterase ambt_11500 SM00091 PAS domain ambt_11500 SM00267 diguanylate cyclase ambt_11510 SM00271 DnaJ molecular chaperone homology domain ambt_11525 SM00387 Histidine kinase-like ATPases ambt_11525 SM00388 His Kinase A (phosphoacceptor) domain ambt_11525 SM00448 cheY-homologous receiver domain ambt_11530 SM00421 helix_turn_helix, Lux Regulon ambt_11530 SM00448 cheY-homologous receiver domain ambt_11600 SM01266 ambt_11600 ambt_11620 SM00363 S4 RNA-binding domain ambt_11690 SM00448 cheY-homologous receiver domain ambt_11690 SM00862 Transcriptional regulatory protein, C terminal ambt_11695 SM00387 Histidine kinase-like ATPases ambt_11705 SM00905 Dihydroneopterin aldolase ambt_11720 SM00382 ATPases associated with a variety of cellular activities ambt_11765 SM00028 Tetratricopeptide repeats ambt_11765 SM00448 cheY-homologous receiver domain ambt_11775 SM00729 Elongator protein 3, MiaB family, Radical SAM ambt_11780 SM00382 ATPases associated with a variety of cellular activities ambt_11800 SM00382 ATPases associated with a variety of cellular activities ambt_11810 SM00226 Low molecular weight phosphatase family ambt_11835 SM00729 Elongator protein 3, MiaB family, Radical SAM ambt_11835 SM00876 Biotin and Thiamin Synthesis associated domain ambt_11900 SM00267 diguanylate cyclase ambt_11930 SM00116 Domain in cystathionine beta-synthase and other proteins. ambt_11935 SM00829 Enoylreductase ambt_11940 SM00829 Enoylreductase ambt_11955 SM01060 ambt_11955 ambt_11965 SM00859 Semialdehyde dehydrogenase, NAD binding domain ambt_12000 SM00028 Tetratricopeptide repeats ambt_12000 SM00387 Histidine kinase-like ATPases ambt_12000 SM00388 His Kinase A (phosphoacceptor) domain ambt_12000 SM00448 cheY-homologous receiver domain ambt_12030 SM00864 Tubulin/FtsZ family, GTPase domain ambt_12030 SM00865 Tubulin/FtsZ family, C-terminal domain ambt_12055 SM00267 diguanylate cyclase ambt_12075 SM00028 Tetratricopeptide repeats ambt_12115 SM00382 ATPases associated with a variety of cellular activities ambt_12120 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ambt_12150 SM00382 ATPases associated with a variety of cellular activities ambt_12150 SM00448 cheY-homologous receiver domain ambt_12160 SM00387 Histidine kinase-like ATPases ambt_12160 SM00388 His Kinase A (phosphoacceptor) domain ambt_12170 SM00052 Putative diguanylate phosphodiesterase ambt_12170 SM00267 diguanylate cyclase ambt_12180 SM00331 Sigma factor PP2C-like phosphatases ambt_12180 SM00448 cheY-homologous receiver domain ambt_12195 SM00448 cheY-homologous receiver domain ambt_12200 SM00830 Chorismate mutase type II ambt_12205 SM00830 Chorismate mutase type II ambt_12265 SM00382 ATPases associated with a variety of cellular activities ambt_12310 SM00382 ATPases associated with a variety of cellular activities ambt_12310 SM00962 SRP54-type protein, GTPase domain ambt_12310 SM00963 SRP54-type protein, helical bundle domain ambt_12320 SM01091 Transporter associated domain ambt_12330 SM00855 Phosphoglycerate mutase family ambt_12340 SM00052 Putative diguanylate phosphodiesterase ambt_12340 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ambt_12340 SM00091 PAS domain ambt_12340 SM00267 diguanylate cyclase ambt_12380 SM00327 von Willebrand factor (vWF) type A domain ambt_12385 SM00028 Tetratricopeptide repeats ambt_12385 SM00327 von Willebrand factor (vWF) type A domain ambt_12410 SM00267 diguanylate cyclase ambt_12500 SM00487 DEAD-like helicases superfamily ambt_12500 SM00490 helicase superfamily c-terminal domain ambt_12530 SM00900 ambt_12530 ambt_12540 SM00478 endonuclease III ambt_12540 SM00525 ambt_12540 ambt_12560 SM00028 Tetratricopeptide repeats ambt_12565 SM00267 diguanylate cyclase ambt_12575 SM00357 Cold shock protein domain ambt_12595 SM00479 ambt_12595 ambt_12610 SM00965 Secretin and TonB N terminus short domain ambt_12640 SM00763 PrkA AAA domain ambt_12675 SM00463 Small MutS-related domain ambt_12685 SM00387 Histidine kinase-like ATPases ambt_12690 SM00382 ATPases associated with a variety of cellular activities ambt_12690 SM00448 cheY-homologous receiver domain ambt_12705 SM00382 ATPases associated with a variety of cellular activities ambt_12760 SM00937 ambt_12760 ambt_12805 SM00052 Putative diguanylate phosphodiesterase ambt_12805 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ambt_12805 SM00091 PAS domain ambt_12805 SM00267 diguanylate cyclase ambt_12810 SM00836 DALR anticodon binding domain ambt_12810 SM01016 Arginyl tRNA synthetase N terminal dom ambt_12910 SM00028 Tetratricopeptide repeats ambt_12945 SM00028 Tetratricopeptide repeats ambt_12960 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. ambt_12985 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ambt_12990 SM00344 helix_turn_helix ASNC type ambt_13005 SM00091 PAS domain ambt_13005 SM00382 ATPases associated with a variety of cellular activities ambt_13030 SM00382 ATPases associated with a variety of cellular activities ambt_13050 SM00382 ATPases associated with a variety of cellular activities ambt_13055 SM00382 ATPases associated with a variety of cellular activities ambt_13085 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ambt_13125 SM00947 Carbonic anhydrase ambt_13140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_13140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_13150 SM01018 B12 binding domain ambt_13170 SM00260 Two component signalling adaptor domain ambt_13175 SM00260 Two component signalling adaptor domain ambt_13185 SM00448 cheY-homologous receiver domain ambt_13190 SM00073 Histidine Phosphotransfer domain ambt_13190 SM00260 Two component signalling adaptor domain ambt_13190 SM00387 Histidine kinase-like ATPases ambt_13190 SM01231 ambt_13190 ambt_13200 SM00448 cheY-homologous receiver domain ambt_13215 SM00382 ATPases associated with a variety of cellular activities ambt_13215 SM00962 SRP54-type protein, GTPase domain ambt_13275 SM00382 ATPases associated with a variety of cellular activities ambt_13300 SM00382 ATPases associated with a variety of cellular activities ambt_13300 SM00448 cheY-homologous receiver domain ambt_13305 SM00387 Histidine kinase-like ATPases ambt_13305 SM00388 His Kinase A (phosphoacceptor) domain ambt_13310 SM00382 ATPases associated with a variety of cellular activities ambt_13340 SM00858 ambt_13340 ambt_13360 SM00822 ambt_13360 ambt_13470 SM00047 Lysozyme subfamily 2 ambt_13515 SM00138 Methyltransferase, chemotaxis proteins ambt_13520 SM00260 Two component signalling adaptor domain ambt_13520 SM00448 cheY-homologous receiver domain ambt_13525 SM00858 ambt_13525 ambt_13555 SM00052 Putative diguanylate phosphodiesterase ambt_13560 SM00421 helix_turn_helix, Lux Regulon ambt_13570 SM00382 ATPases associated with a variety of cellular activities ambt_13585 SM00463 Small MutS-related domain ambt_13595 SM01211 ambt_13595 ambt_13600 SM00062 Bacterial periplasmic substrate-binding proteins ambt_13620 SM00267 diguanylate cyclase ambt_13625 SM00977 TilS substrate C-terminal domain ambt_13635 SM00481 DNA polymerase alpha chain like domain ambt_13660 SM00935 Outer membrane protein (OmpH-like) ambt_13670 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ambt_13715 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ambt_13800 SM00267 diguanylate cyclase ambt_13820 SM01329 ambt_13820 ambt_13825 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ambt_13865 SM00382 ATPases associated with a variety of cellular activities ambt_13935 SM00382 ATPases associated with a variety of cellular activities ambt_13955 SM00382 ATPases associated with a variety of cellular activities ambt_13960 SM00382 ATPases associated with a variety of cellular activities ambt_13970 SM00533 DNA-binding domain of DNA mismatch repair MUTS family ambt_13970 SM00534 ATPase domain of DNA mismatch repair MUTS family ambt_13980 SM01192 ambt_13980 ambt_13980 SM01193 ambt_13980 ambt_14000 SM00917 LeuA allosteric (dimerisation) domain ambt_14005 SM01329 ambt_14005 ambt_14030 SM00382 ATPases associated with a variety of cellular activities ambt_14040 SM00487 DEAD-like helicases superfamily ambt_14040 SM00490 helicase superfamily c-terminal domain ambt_14050 SM00729 Elongator protein 3, MiaB family, Radical SAM ambt_14070 SM00091 PAS domain ambt_14075 SM00448 cheY-homologous receiver domain ambt_14120 SM00487 DEAD-like helicases superfamily ambt_14120 SM00490 helicase superfamily c-terminal domain ambt_14160 SM00487 DEAD-like helicases superfamily ambt_14220 SM00382 ATPases associated with a variety of cellular activities ambt_14245 SM00267 diguanylate cyclase ambt_14260 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ambt_14260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_14275 SM01263 ambt_14275 ambt_14285 SM00347 helix_turn_helix multiple antibiotic resistance protein ambt_14305 SM00267 diguanylate cyclase ambt_14355 SM00382 ATPases associated with a variety of cellular activities ambt_14395 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ambt_14400 SM00861 Transketolase, pyrimidine binding domain ambt_14410 SM01118 ambt_14410 ambt_14430 SM00342 helix_turn_helix, arabinose operon control protein ambt_14440 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ambt_14440 SM00387 Histidine kinase-like ATPases ambt_14440 SM00388 His Kinase A (phosphoacceptor) domain ambt_14440 SM00448 cheY-homologous receiver domain ambt_14445 SM00052 Putative diguanylate phosphodiesterase ambt_14445 SM00267 diguanylate cyclase ambt_14480 SM00342 helix_turn_helix, arabinose operon control protein ambt_14510 SM00271 DnaJ molecular chaperone homology domain ambt_14530 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ambt_14535 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ambt_14570 SM00382 ATPases associated with a variety of cellular activities ambt_14580 SM00116 Domain in cystathionine beta-synthase and other proteins. ambt_14600 SM00382 ATPases associated with a variety of cellular activities ambt_14630 SM00116 Domain in cystathionine beta-synthase and other proteins. ambt_14630 SM00924 MgtE intracellular N domain ambt_14690 SM00631 ambt_14690 ambt_14695 SM00965 Secretin and TonB N terminus short domain ambt_14735 SM00954 Region found in RelA / SpoT proteins ambt_14780 SM00271 DnaJ molecular chaperone homology domain ambt_14800 SM00650 Ribosomal RNA adenine dimethylases ambt_14815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_14815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_14860 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ambt_14860 SM00091 PAS domain ambt_14860 SM00387 Histidine kinase-like ATPases ambt_14860 SM00388 His Kinase A (phosphoacceptor) domain ambt_14860 SM00448 cheY-homologous receiver domain ambt_14865 SM00448 cheY-homologous receiver domain ambt_14865 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ambt_14875 SM00028 Tetratricopeptide repeats ambt_14910 SM00710 Parallel beta-helix repeats ambt_14915 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. ambt_14925 SM00387 Histidine kinase-like ATPases ambt_14925 SM00388 His Kinase A (phosphoacceptor) domain ambt_14930 SM00448 cheY-homologous receiver domain ambt_14930 SM00862 Transcriptional regulatory protein, C terminal ambt_14935 SM00387 Histidine kinase-like ATPases ambt_14945 SM00530 Helix-turn-helix XRE-family like proteins ambt_14980 SM00905 Dihydroneopterin aldolase ambt_14985 SM01207 ambt_14985 ambt_15010 SM00400 zinc finger ambt_15010 SM00493 ambt_15010 ambt_15010 SM00766 DNA primase DnaG DnaB-binding ambt_15020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_15020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_15050 SM01007 Class II Aldolase and Adducin N-terminal domain ambt_15055 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ambt_15130 SM00382 ATPases associated with a variety of cellular activities ambt_15150 SM00091 PAS domain ambt_15150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_15170 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ambt_15195 SM01012 ambt_15195 ambt_15205 SM00014 Acid phosphatase homologues ambt_15250 SM00841 Elongation factor P, C-terminal ambt_15250 SM01185 ambt_15250 ambt_15280 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ambt_15285 SM00052 Putative diguanylate phosphodiesterase ambt_15285 SM00091 PAS domain ambt_15285 SM00138 Methyltransferase, chemotaxis proteins ambt_15285 SM00267 diguanylate cyclase ambt_15290 SM00387 Histidine kinase-like ATPases ambt_15290 SM00433 TopoisomeraseII ambt_15325 SM00028 Tetratricopeptide repeats ambt_15330 SM00487 DEAD-like helicases superfamily ambt_15330 SM00490 helicase superfamily c-terminal domain ambt_15350 SM00487 DEAD-like helicases superfamily ambt_15350 SM00490 helicase superfamily c-terminal domain ambt_15375 SM00387 Histidine kinase-like ATPases ambt_15375 SM00388 His Kinase A (phosphoacceptor) domain ambt_15375 SM00448 cheY-homologous receiver domain ambt_15380 SM00267 diguanylate cyclase ambt_15385 SM00448 cheY-homologous receiver domain ambt_15405 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ambt_15415 SM00927 DNA mismatch repair enzyme MutH ambt_15425 SM01118 ambt_15425 ambt_15430 SM00287 Bacterial SH3 domain homologues ambt_15435 SM00388 His Kinase A (phosphoacceptor) domain ambt_15440 SM00448 cheY-homologous receiver domain ambt_15440 SM00862 Transcriptional regulatory protein, C terminal ambt_15465 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_15465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_15465 SM01049 ambt_15465 ambt_15510 SM00257 Lysin motif ambt_15655 SM00670 Large family of predicted nucleotide-binding domains ambt_15695 SM00360 RNA recognition motif ambt_15725 SM00062 Bacterial periplasmic substrate-binding proteins ambt_15750 SM01005 Alanine racemase, C-terminal domain ambt_15800 SM00788 Adenylosuccinate synthetase ambt_15845 SM01001 AIR carboxylase ambt_15855 SM00387 Histidine kinase-like ATPases ambt_15855 SM00388 His Kinase A (phosphoacceptor) domain ambt_15855 SM00448 cheY-homologous receiver domain ambt_15865 SM00357 Cold shock protein domain ambt_15865 SM00382 ATPases associated with a variety of cellular activities ambt_15865 SM00959 Rho termination factor, N-terminal domain ambt_15875 SM00487 DEAD-like helicases superfamily ambt_15875 SM00490 helicase superfamily c-terminal domain ambt_15885 SM01004 Delta-aminolevulinic acid dehydratase ambt_15890 SM00267 diguanylate cyclase ambt_15945 SM00028 Tetratricopeptide repeats ambt_15965 SM00479 ambt_15965 ambt_16010 SM00450 Rhodanese Homology Domain ambt_16040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_16040 SM00387 Histidine kinase-like ATPases ambt_16040 SM00388 His Kinase A (phosphoacceptor) domain ambt_16045 SM00448 cheY-homologous receiver domain ambt_16045 SM00862 Transcriptional regulatory protein, C terminal ambt_16070 SM00851 MGS-like domain ambt_16075 SM00859 Semialdehyde dehydrogenase, NAD binding domain ambt_16105 SM00052 Putative diguanylate phosphodiesterase ambt_16140 SM00919 Malic enzyme, NAD binding domain ambt_16140 SM01274 ambt_16140 ambt_16150 SM00842 Cell division protein FtsA ambt_16170 SM00965 Secretin and TonB N terminus short domain ambt_16255 SM01150 ambt_16255 ambt_16260 SM00052 Putative diguanylate phosphodiesterase ambt_16260 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ambt_16260 SM00267 diguanylate cyclase ambt_16270 SM00434 DNA Topoisomerase IV ambt_16275 SM00073 Histidine Phosphotransfer domain ambt_16275 SM00387 Histidine kinase-like ATPases ambt_16275 SM00388 His Kinase A (phosphoacceptor) domain ambt_16275 SM00448 cheY-homologous receiver domain ambt_16310 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain ambt_16330 SM00938 Nitrogen regulatory protein P-II ambt_16345 SM00342 helix_turn_helix, arabinose operon control protein ambt_16435 SM00487 DEAD-like helicases superfamily ambt_16435 SM00490 helicase superfamily c-terminal domain ambt_16460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_16460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_16510 SM00322 K homology RNA-binding domain ambt_16525 SM01382 ambt_16525 ambt_16525 SM01383 ambt_16525 ambt_16545 SM01403 ambt_16545 ambt_16550 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ambt_16550 SM00382 ATPases associated with a variety of cellular activities ambt_16555 SM00671 Sel1-like repeats. ambt_16565 SM00855 Phosphoglycerate mutase family ambt_16635 SM00354 helix_turn _helix lactose operon repressor ambt_16660 SM00342 helix_turn_helix, arabinose operon control protein ambt_16660 SM00387 Histidine kinase-like ATPases ambt_16660 SM00388 His Kinase A (phosphoacceptor) domain ambt_16660 SM00448 cheY-homologous receiver domain ambt_16690 SM00354 helix_turn _helix lactose operon repressor ambt_16720 SM00448 cheY-homologous receiver domain ambt_16730 SM00138 Methyltransferase, chemotaxis proteins ambt_16735 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ambt_16735 SM00091 PAS domain ambt_16735 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_16740 SM00260 Two component signalling adaptor domain ambt_16745 SM00073 Histidine Phosphotransfer domain ambt_16745 SM00260 Two component signalling adaptor domain ambt_16745 SM00387 Histidine kinase-like ATPases ambt_16745 SM01231 ambt_16745 ambt_16750 SM00448 cheY-homologous receiver domain ambt_16755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_16765 SM00448 cheY-homologous receiver domain ambt_16765 SM00862 Transcriptional regulatory protein, C terminal ambt_16770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_16770 SM00387 Histidine kinase-like ATPases ambt_16770 SM00388 His Kinase A (phosphoacceptor) domain ambt_16820 SM00450 Rhodanese Homology Domain ambt_16820 SM00849 Metallo-beta-lactamase superfamily ambt_16865 SM00382 ATPases associated with a variety of cellular activities ambt_16955 SM00487 DEAD-like helicases superfamily ambt_16955 SM00490 helicase superfamily c-terminal domain ambt_17020 SM00857 Resolvase, N terminal domain ambt_17060 SM00478 endonuclease III ambt_17060 SM00525 ambt_17060 ambt_17085 SM00387 Histidine kinase-like ATPases ambt_17090 SM00448 cheY-homologous receiver domain ambt_17090 SM00862 Transcriptional regulatory protein, C terminal ambt_17095 SM01038 Beta galactosidase small chain ambt_17100 SM00342 helix_turn_helix, arabinose operon control protein ambt_17115 SM00634 Bacterial Ig-like domain (group 1) ambt_17135 SM00316 Ribosomal protein S1-like RNA-binding domain ambt_17215 SM00965 Secretin and TonB N terminus short domain ambt_17250 SM00420 helix_turn_helix, Deoxyribose operon repressor ambt_17250 SM01134 ambt_17250 ambt_17320 SM01130 ambt_17320 ambt_17335 SM00073 Histidine Phosphotransfer domain ambt_17335 SM00387 Histidine kinase-like ATPases ambt_17335 SM00388 His Kinase A (phosphoacceptor) domain ambt_17335 SM00448 cheY-homologous receiver domain ambt_17340 SM00448 cheY-homologous receiver domain ambt_17385 SM00354 helix_turn _helix lactose operon repressor ambt_17420 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. ambt_17460 SM00014 Acid phosphatase homologues ambt_17500 SM00971 Serine acetyltransferase, N-terminal ambt_17510 SM00267 diguanylate cyclase ambt_17510 SM00448 cheY-homologous receiver domain ambt_17520 SM00924 MgtE intracellular N domain ambt_17530 SM00341 Helicase and RNase D C-terminal ambt_17530 SM00487 DEAD-like helicases superfamily ambt_17530 SM00490 helicase superfamily c-terminal domain ambt_17530 SM00956 ambt_17530 ambt_17610 SM00953 ambt_17610 ambt_17635 SM00953 ambt_17635 ambt_17765 SM00671 Sel1-like repeats. ambt_17910 SM01130 ambt_17910 ambt_17935 SM00345 helix_turn_helix gluconate operon transcriptional repressor ambt_17935 SM00895 ambt_17935 ambt_17945 SM01126 ambt_17945 ambt_17975 SM00470 ParB-like nuclease domain ambt_18115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_18115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_18140 SM00052 Putative diguanylate phosphodiesterase ambt_18140 SM00267 diguanylate cyclase ambt_18160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_18225 SM00028 Tetratricopeptide repeats ambt_18225 SM00267 diguanylate cyclase ambt_18265 SM00382 ATPases associated with a variety of cellular activities ambt_18295 SM00487 DEAD-like helicases superfamily ambt_18295 SM00490 helicase superfamily c-terminal domain ambt_18310 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ambt_18310 SM00954 Region found in RelA / SpoT proteins ambt_18315 SM01409 ambt_18315 ambt_18320 SM00072 Guanylate kinase homologues. ambt_18330 SM00267 diguanylate cyclase ambt_18390 SM00729 Elongator protein 3, MiaB family, Radical SAM ambt_18470 SM00876 Biotin and Thiamin Synthesis associated domain ambt_18500 SM00849 Metallo-beta-lactamase superfamily ambt_18525 SM00382 ATPases associated with a variety of cellular activities ambt_18555 SM00387 Histidine kinase-like ATPases ambt_18555 SM00388 His Kinase A (phosphoacceptor) domain ambt_18555 SM00448 cheY-homologous receiver domain ambt_18570 SM00487 DEAD-like helicases superfamily ambt_18570 SM00490 helicase superfamily c-terminal domain ambt_18600 SM00530 Helix-turn-helix XRE-family like proteins ambt_18625 SM00052 Putative diguanylate phosphodiesterase ambt_18625 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ambt_18625 SM00267 diguanylate cyclase ambt_18660 SM00450 Rhodanese Homology Domain ambt_18665 SM00829 Enoylreductase ambt_18675 SM00052 Putative diguanylate phosphodiesterase ambt_18675 SM00267 diguanylate cyclase ambt_18705 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain ambt_18705 SM01232 ambt_18705 ambt_18805 SM00481 DNA polymerase alpha chain like domain ambt_18865 SM00984 UDP binding domain ambt_18990 SM00710 Parallel beta-helix repeats ambt_19045 SM00662 RNA polymerases D ambt_19050 SM00363 S4 RNA-binding domain ambt_19050 SM01390 ambt_19050 ambt_19115 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ambt_19120 SM01374 ambt_19120 ambt_19125 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ambt_19125 SM00387 Histidine kinase-like ATPases ambt_19125 SM00388 His Kinase A (phosphoacceptor) domain ambt_19125 SM00448 cheY-homologous receiver domain ambt_19140 SM00967 RNA 2'-O ribose methyltransferase substrate binding ambt_19145 SM00316 Ribosomal protein S1-like RNA-binding domain ambt_19145 SM00357 Cold shock protein domain ambt_19145 SM00955 ambt_19145 ambt_19160 SM00671 Sel1-like repeats. ambt_19215 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_19220 SM00344 helix_turn_helix ASNC type ambt_19240 SM00357 Cold shock protein domain ambt_19270 SM00448 cheY-homologous receiver domain ambt_19280 SM00387 Histidine kinase-like ATPases ambt_19285 SM00448 cheY-homologous receiver domain ambt_19295 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ambt_19320 SM00382 ATPases associated with a variety of cellular activities ambt_19325 SM00421 helix_turn_helix, Lux Regulon ambt_19340 SM00382 ATPases associated with a variety of cellular activities ambt_19340 SM01086 C-terminal, D2-small domain, of ClpB protein ambt_19355 SM00487 DEAD-like helicases superfamily ambt_19355 SM00490 helicase superfamily c-terminal domain ambt_19375 SM00919 Malic enzyme, NAD binding domain ambt_19375 SM01274 ambt_19375 ambt_19425 SM00052 Putative diguanylate phosphodiesterase ambt_19430 SM00052 Putative diguanylate phosphodiesterase ambt_19440 SM00382 ATPases associated with a variety of cellular activities ambt_19445 SM00382 ATPases associated with a variety of cellular activities ambt_19445 SM00962 SRP54-type protein, GTPase domain ambt_19445 SM00963 SRP54-type protein, helical bundle domain ambt_19520 SM00052 Putative diguanylate phosphodiesterase ambt_19535 SM00382 ATPases associated with a variety of cellular activities ambt_19540 SM00448 cheY-homologous receiver domain ambt_19540 SM00862 Transcriptional regulatory protein, C terminal ambt_19545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_19545 SM00387 Histidine kinase-like ATPases ambt_19545 SM00388 His Kinase A (phosphoacceptor) domain ambt_19555 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. ambt_19615 SM00838 Elongation factor G C-terminus ambt_19615 SM00889 Elongation factor G, domain IV ambt_19630 SM00663 RNA polymerase I subunit A N-terminus ambt_19655 SM00649 Ribosomal protein L11/L12 ambt_19665 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. ambt_19665 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ambt_19675 SM00382 ATPases associated with a variety of cellular activities ambt_19700 SM00487 DEAD-like helicases superfamily ambt_19700 SM00490 helicase superfamily c-terminal domain ambt_19710 SM00782 PhnA Zinc-Ribbon ambt_19755 SM00487 DEAD-like helicases superfamily ambt_19755 SM00490 helicase superfamily c-terminal domain ambt_19760 SM00849 Metallo-beta-lactamase superfamily ambt_19845 SM00244 prohibitin homologues ambt_19850 SM00244 prohibitin homologues ambt_19870 SM01340 ambt_19870 ambt_19875 SM00257 Lysin motif ambt_19875 SM00646 ambt_19875 ambt_19935 SM00382 ATPases associated with a variety of cellular activities ambt_19990 SM00387 Histidine kinase-like ATPases ambt_19990 SM00388 His Kinase A (phosphoacceptor) domain ambt_20000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_20005 SM00387 Histidine kinase-like ATPases ambt_20010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ambt_20015 SM00354 helix_turn _helix lactose operon repressor ambt_20040 SM00382 ATPases associated with a variety of cellular activities ambt_20105 SM00345 helix_turn_helix gluconate operon transcriptional repressor ambt_20105 SM00866 ambt_20105 ambt_20165 SM00382 ATPases associated with a variety of cellular activities ambt_20170 SM00382 ATPases associated with a variety of cellular activities ambt_20200 SM00382 ATPases associated with a variety of cellular activities ambt_20230 SM00841 Elongation factor P, C-terminal ambt_20230 SM01185 ambt_20230 ambt_20390 SM00867 YceI-like domain ambt_20430 SM00829 Enoylreductase ambt_20435 SM00267 diguanylate cyclase ambt_20440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_20440 SM00387 Histidine kinase-like ATPases ambt_20440 SM00388 His Kinase A (phosphoacceptor) domain ambt_20440 SM00448 cheY-homologous receiver domain ambt_20470 SM00382 ATPases associated with a variety of cellular activities ambt_20540 SM00420 helix_turn_helix, Deoxyribose operon repressor ambt_20540 SM01134 ambt_20540 ambt_20550 SM00267 diguanylate cyclase ambt_20565 SM00342 helix_turn_helix, arabinose operon control protein ambt_20565 SM01009 AlkA N-terminal domain ambt_20595 SM01002 Alanine dehydrogenase/PNT, C-terminal domain ambt_20595 SM01003 Alanine dehydrogenase/PNT, N-terminal domain ambt_20630 SM00988 UreE urease accessory protein, N-terminal domain ambt_20655 SM00382 ATPases associated with a variety of cellular activities ambt_20685 SM00387 Histidine kinase-like ATPases ambt_20685 SM00388 His Kinase A (phosphoacceptor) domain ambt_20685 SM00448 cheY-homologous receiver domain ambt_20690 SM00421 helix_turn_helix, Lux Regulon ambt_20690 SM00448 cheY-homologous receiver domain ambt_20695 SM00833 Cobalamin synthesis protein cobW C-terminal domain ambt_20705 SM00052 Putative diguanylate phosphodiesterase ambt_20705 SM00267 diguanylate cyclase ambt_20990 SM00470 ParB-like nuclease domain ambt_21015 SM00883 Chaperonin 10 Kd subunit ambt_21045 SM00878 Biotin carboxylase C-terminal domain ambt_21065 SM00479 ambt_21065 ambt_21065 SM00990 ambt_21065 ambt_21165 SM00062 Bacterial periplasmic substrate-binding proteins ambt_21185 SM00798 AICARFT/IMPCHase bienzyme ambt_21185 SM00851 MGS-like domain ambt_21195 SM01209 ambt_21195 ambt_21195 SM01210 ambt_21195 ambt_21245 SM00388 His Kinase A (phosphoacceptor) domain ambt_21250 SM00448 cheY-homologous receiver domain ambt_21250 SM00862 Transcriptional regulatory protein, C terminal ambt_21270 SM00382 ATPases associated with a variety of cellular activities ambt_21345 SM00448 cheY-homologous receiver domain ambt_21345 SM00862 Transcriptional regulatory protein, C terminal ambt_21350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ambt_21350 SM00387 Histidine kinase-like ATPases ambt_21350 SM00388 His Kinase A (phosphoacceptor) domain ambt_21370 SM00363 S4 RNA-binding domain ambt_21385 SM00382 ATPases associated with a variety of cellular activities ambt_21435 SM00849 Metallo-beta-lactamase superfamily ambt_21465 SM00867 YceI-like domain ambt_21505 SM00382 ATPases associated with a variety of cellular activities ambt_21525 SM00320 WD40 repeats ambt_21585 SM00530 Helix-turn-helix XRE-family like proteins ambt_21625 SM00316 Ribosomal protein S1-like RNA-binding domain ambt_21625 SM00732 Likely ribonuclease with RNase H fold. ambt_21650 SM00631 ambt_21650 ambt_21680 SM00342 helix_turn_helix, arabinose operon control protein ambt_21680 SM00871 Bacterial transcription activator, effector binding domain ambt_21765 SM00563 Phosphate acyltransferases ambt_21790 SM00382 ATPases associated with a variety of cellular activities ambt_21855 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase ambt_21965 SM00530 Helix-turn-helix XRE-family like proteins ambt_21985 SM00487 DEAD-like helicases superfamily ambt_21985 SM00490 helicase superfamily c-terminal domain ambt_22005 SM00487 DEAD-like helicases superfamily ambt_22100 SM00354 helix_turn _helix lactose operon repressor ambt_22115 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ambt_22125 SM01144 ambt_22125 ambt_22150 SM00382 ATPases associated with a variety of cellular activities ambt_22190 SM00470 ParB-like nuclease domain ambt_22205 SM01228 ambt_22205 ambt_22240 SM01234 ambt_22240