locus-tag class description AV939_00005 PF08299 Bacterial dnaA protein helix-turn-helix AV939_00005 PF00308 Bacterial dnaA protein AV939_00005 PF11638 DnaA N-terminal domain AV939_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AV939_00010 PF02767 DNA polymerase III beta subunit, central domain AV939_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AV939_00015 PF02463 RecF/RecN/SMC N terminal domain AV939_00020 PF18053 DNA gyrase B subunit insert domain AV939_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_00020 PF00204 DNA gyrase B AV939_00020 PF00986 DNA gyrase B subunit, carboxyl terminus AV939_00020 PF01751 Toprim domain AV939_00035 PF02092 Glycyl-tRNA synthetase beta subunit AV939_00035 PF05746 DALR anticodon binding domain AV939_00040 PF02091 Glycyl-tRNA synthetase alpha subunit AV939_00045 PF03352 Methyladenine glycosylase AV939_00055 PF04220 Der GTPase activator (YihI) AV939_00060 PF00034 Cytochrome c AV939_00065 PF01926 50S ribosome-binding GTPase AV939_00070 PF01367 5'-3' exonuclease, C-terminal SAM fold AV939_00070 PF01612 3'-5' exonuclease AV939_00070 PF00476 DNA polymerase family A AV939_00070 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AV939_00080 PF02386 Cation transport protein AV939_00085 PF02254 TrkA-N domain AV939_00085 PF02080 TrkA-C domain AV939_00090 PF01189 16S rRNA methyltransferase RsmB/F AV939_00090 PF01029 NusB family AV939_00095 PF00551 Formyl transferase AV939_00095 PF02911 Formyl transferase, C-terminal domain AV939_00100 PF01327 Polypeptide deformylase AV939_00110 PF02481 DNA recombination-mediator protein A AV939_00110 PF17782 DprA winged helix domain AV939_00115 PF04361 Protein of unknown function (DUF494) AV939_00125 PF01300 Telomere recombination AV939_00130 PF01218 Coproporphyrinogen III oxidase AV939_00135 PF03922 OmpW family AV939_00140 PF01152 Bacterial-like globin AV939_00145 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AV939_00145 PF01488 Shikimate / quinate 5-dehydrogenase AV939_00145 PF08501 Shikimate dehydrogenase substrate binding domain AV939_00150 PF00132 Bacterial transferase hexapeptide (six repeats) AV939_00195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AV939_00195 PF07733 Bacterial DNA polymerase III alpha NTPase domain AV939_00195 PF14579 Helix-hairpin-helix motif AV939_00195 PF01336 OB-fold nucleic acid binding domain AV939_00195 PF02811 PHP domain AV939_00205 PF00154 recA bacterial DNA recombination protein AV939_00225 PF04389 Peptidase family M28 AV939_00225 PF02225 PA domain AV939_00235 PF00440 Bacterial regulatory proteins, tetR family AV939_00240 PF04127 DNA / pantothenate metabolism flavoprotein AV939_00240 PF02441 Flavoprotein AV939_00245 PF04002 RadC-like JAB domain AV939_00265 PF06082 Exopolysaccharide biosynthesis protein YbjH AV939_00270 PF01467 Cytidylyltransferase-like AV939_00275 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AV939_00280 PF00830 Ribosomal L28 family AV939_00285 PF00471 Ribosomal protein L33 AV939_00295 PF06827 Zinc finger found in FPG and IleRS AV939_00295 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AV939_00295 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AV939_00300 PF01467 Cytidylyltransferase-like AV939_00310 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AV939_00325 PF03707 Bacterial signalling protein N terminal repeat AV939_00325 PF00990 Diguanylate cyclase, GGDEF domain AV939_00325 PF00563 EAL domain AV939_00330 PF00155 Aminotransferase class I and II AV939_00335 PF00107 Zinc-binding dehydrogenase AV939_00335 PF08240 Alcohol dehydrogenase GroES-like domain AV939_00340 PF00581 Rhodanese-like domain AV939_00345 PF01694 Rhomboid family AV939_00345 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AV939_00355 PF04345 Chorismate lyase AV939_00360 PF01040 UbiA prenyltransferase family AV939_00365 PF04380 Membrane fusogenic activity AV939_00370 PF13361 UvrD-like helicase C-terminal domain AV939_00370 PF00580 UvrD/REP helicase N-terminal domain AV939_00375 PF00990 Diguanylate cyclase, GGDEF domain AV939_00375 PF00563 EAL domain AV939_00375 PF03707 Bacterial signalling protein N terminal repeat AV939_00380 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AV939_00415 PF00266 Aminotransferase class-V AV939_00450 PF01580 FtsK/SpoIIIE family AV939_00450 PF09397 Ftsk gamma domain AV939_00450 PF17854 FtsK alpha domain AV939_00465 PF02652 L-lactate permease AV939_00485 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AV939_00500 PF12833 Helix-turn-helix domain AV939_00500 PF01965 DJ-1/PfpI family AV939_00505 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AV939_00505 PF00355 Rieske [2Fe-2S] domain AV939_00515 PF00042 Globin AV939_00515 PF00970 Oxidoreductase FAD-binding domain AV939_00515 PF00175 Oxidoreductase NAD-binding domain AV939_00520 PF00464 Serine hydroxymethyltransferase AV939_00525 PF01266 FAD dependent oxidoreductase AV939_00530 PF04267 Sarcosine oxidase, delta subunit family AV939_00535 PF17806 Sarcosine oxidase A3 domain AV939_00535 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_00535 PF08669 Glycine cleavage T-protein C-terminal barrel domain AV939_00535 PF01571 Aminomethyltransferase folate-binding domain AV939_00545 PF00551 Formyl transferase AV939_00555 PF02028 BCCT, betaine/carnitine/choline family transporter AV939_00560 PF03315 Serine dehydratase beta chain AV939_00560 PF03313 Serine dehydratase alpha chain AV939_00565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_00565 PF03466 LysR substrate binding domain AV939_00580 PF00171 Aldehyde dehydrogenase family AV939_00585 PF13378 Enolase C-terminal domain-like AV939_00585 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AV939_00590 PF00732 GMC oxidoreductase AV939_00590 PF05199 GMC oxidoreductase AV939_00595 PF00171 Aldehyde dehydrogenase family AV939_00600 PF07715 TonB-dependent Receptor Plug Domain AV939_00600 PF00593 TonB dependent receptor AV939_00605 PF13181 Tetratricopeptide repeat AV939_00610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_00610 PF00672 HAMP domain AV939_00610 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AV939_00610 PF00072 Response regulator receiver domain AV939_00610 PF00512 His Kinase A (phospho-acceptor) domain AV939_00610 PF01627 Hpt domain AV939_00615 PF07715 TonB-dependent Receptor Plug Domain AV939_00615 PF00593 TonB dependent receptor AV939_00620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_00620 PF03466 LysR substrate binding domain AV939_00625 PF00171 Aldehyde dehydrogenase family AV939_00630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AV939_00630 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AV939_00635 PF13533 Biotin-lipoyl like AV939_00640 PF00005 ABC transporter AV939_00655 PF02770 Acyl-CoA dehydrogenase, middle domain AV939_00655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV939_00655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV939_00660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_00660 PF03466 LysR substrate binding domain AV939_00665 PF00753 Metallo-beta-lactamase superfamily AV939_00670 PF02627 Carboxymuconolactone decarboxylase family AV939_00675 PF04317 YcjX-like family, DUF463 AV939_00695 PF06968 Biotin and Thiamin Synthesis associated domain AV939_00695 PF04055 Radical SAM superfamily AV939_00700 PF05690 Thiazole biosynthesis protein ThiG AV939_00710 PF00899 ThiF family AV939_00715 PF02581 Thiamine monophosphate synthase AV939_00720 PF13667 ThiC-associated domain AV939_00720 PF01964 Radical SAM ThiC family AV939_00725 PF07715 TonB-dependent Receptor Plug Domain AV939_00725 PF00593 TonB dependent receptor AV939_00730 PF00296 Luciferase-like monooxygenase AV939_00740 PF00881 Nitroreductase family AV939_00740 PF01996 F420-0:Gamma-glutamyl ligase AV939_00755 PF04055 Radical SAM superfamily AV939_00760 PF04055 Radical SAM superfamily AV939_00765 PF00440 Bacterial regulatory proteins, tetR family AV939_00765 PF08362 YcdC-like protein, C-terminal region AV939_00770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_00770 PF03466 LysR substrate binding domain AV939_00775 PF00202 Aminotransferase class-III AV939_00780 PF00171 Aldehyde dehydrogenase family AV939_00785 PF01546 Peptidase family M20/M25/M40 AV939_00785 PF07687 Peptidase dimerisation domain AV939_00790 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AV939_00795 PF01979 Amidohydrolase family AV939_00800 PF07719 Tetratricopeptide repeat AV939_00800 PF07219 HemY protein N-terminus AV939_00805 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AV939_00815 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AV939_00815 PF03900 Porphobilinogen deaminase, C-terminal domain AV939_00820 PF00072 Response regulator receiver domain AV939_00820 PF00990 Diguanylate cyclase, GGDEF domain AV939_00830 PF00625 Guanylate kinase AV939_00835 PF01192 RNA polymerase Rpb6 AV939_00840 PF13291 ACT domain AV939_00840 PF04607 Region found in RelA / SpoT proteins AV939_00840 PF02824 TGS domain AV939_00845 PF01042 Endoribonuclease L-PSP AV939_00850 PF00588 SpoU rRNA Methylase family AV939_00850 PF12105 SpoU, rRNA methylase, C-terminal AV939_00855 PF00271 Helicase conserved C-terminal domain AV939_00855 PF17191 RecG wedge domain AV939_00855 PF00270 DEAD/DEAH box helicase AV939_00860 PF04445 Putative SAM-dependent methyltransferase AV939_00865 PF00462 Glutaredoxin AV939_00865 PF08534 Redoxin AV939_00885 PF00528 Binding-protein-dependent transport system inner membrane component AV939_00890 PF00005 ABC transporter AV939_00890 PF08402 TOBE domain AV939_00900 PF05552 Conserved TM helix AV939_00900 PF00924 Mechanosensitive ion channel AV939_00925 PF00563 EAL domain AV939_00925 PF05231 MASE1 AV939_00925 PF08447 PAS fold AV939_00925 PF13426 PAS domain AV939_00925 PF00990 Diguanylate cyclase, GGDEF domain AV939_00925 PF08448 PAS fold AV939_00935 PF03466 LysR substrate binding domain AV939_00935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_00940 PF01810 LysE type translocator AV939_00945 PF00893 Small Multidrug Resistance protein AV939_00960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV939_00960 PF00529 HlyD membrane-fusion protein of T1SS AV939_00965 PF00873 AcrB/AcrD/AcrF family AV939_00975 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AV939_00975 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AV939_00980 PF00850 Histone deacetylase domain AV939_00990 PF00672 HAMP domain AV939_00990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_00990 PF12729 Four helix bundle sensory module for signal transduction AV939_00995 PF01544 CorA-like Mg2+ transporter protein AV939_01000 PF11737 Protein of unknown function (DUF3300) AV939_01005 PF00925 GTP cyclohydrolase II AV939_01010 PF00563 EAL domain AV939_01010 PF00990 Diguanylate cyclase, GGDEF domain AV939_01010 PF08448 PAS fold AV939_01020 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AV939_01030 PF09382 RQC domain AV939_01030 PF16124 RecQ zinc-binding AV939_01030 PF00570 HRDC domain AV939_01030 PF00271 Helicase conserved C-terminal domain AV939_01030 PF00270 DEAD/DEAH box helicase AV939_01035 PF03061 Thioesterase superfamily AV939_01040 PF01769 Divalent cation transporter AV939_01040 PF03448 MgtE intracellular N domain AV939_01040 PF00571 CBS domain AV939_01045 PF00892 EamA-like transporter family AV939_01050 PF00990 Diguanylate cyclase, GGDEF domain AV939_01050 PF00072 Response regulator receiver domain AV939_01055 PF13361 UvrD-like helicase C-terminal domain AV939_01055 PF00580 UvrD/REP helicase N-terminal domain AV939_01060 PF06426 Serine acetyltransferase, N-terminal AV939_01060 PF00132 Bacterial transferase hexapeptide (six repeats) AV939_01065 PF13419 Haloacid dehalogenase-like hydrolase AV939_01070 PF02899 Phage integrase, N-terminal SAM-like domain AV939_01070 PF00589 Phage integrase family AV939_01080 PF01678 Diaminopimelate epimerase AV939_01085 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AV939_01085 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AV939_01100 PF01569 PAP2 superfamily AV939_01105 PF03737 Aldolase/RraA AV939_01115 PF02441 Flavoprotein AV939_01120 PF02875 Mur ligase family, glutamate ligase domain AV939_01120 PF08245 Mur ligase middle domain AV939_01120 PF01225 Mur ligase family, catalytic domain AV939_01125 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AV939_01130 PF00719 Inorganic pyrophosphatase AV939_01155 PF00005 ABC transporter AV939_01155 PF17760 UvrA interaction domain AV939_01155 PF17755 UvrA DNA-binding domain AV939_01160 PF07690 Major Facilitator Superfamily AV939_01165 PF13419 Haloacid dehalogenase-like hydrolase AV939_01175 PF00356 Bacterial regulatory proteins, lacI family AV939_01185 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AV939_01185 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AV939_01190 PF10509 Galactokinase galactose-binding signature AV939_01190 PF08544 GHMP kinases C terminal AV939_01190 PF00288 GHMP kinases N terminal domain AV939_01195 PF00474 Sodium:solute symporter family AV939_01200 PF00436 Single-strand binding protein family AV939_01220 PF00975 Thioesterase domain AV939_01225 PF00873 AcrB/AcrD/AcrF family AV939_01240 PF00486 Transcriptional regulatory protein, C terminal AV939_01250 PF00668 Condensation domain AV939_01250 PF00550 Phosphopantetheine attachment site AV939_01250 PF00975 Thioesterase domain AV939_01250 PF13193 AMP-binding enzyme C-terminal domain AV939_01250 PF00501 AMP-binding enzyme AV939_01255 PF07993 Male sterility protein AV939_01255 PF00501 AMP-binding enzyme AV939_01255 PF13193 AMP-binding enzyme C-terminal domain AV939_01255 PF00668 Condensation domain AV939_01255 PF00550 Phosphopantetheine attachment site AV939_01260 PF00501 AMP-binding enzyme AV939_01260 PF13193 AMP-binding enzyme C-terminal domain AV939_01260 PF00668 Condensation domain AV939_01260 PF00975 Thioesterase domain AV939_01260 PF00550 Phosphopantetheine attachment site AV939_01265 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AV939_01270 PF00005 ABC transporter AV939_01285 PF00486 Transcriptional regulatory protein, C terminal AV939_01285 PF00072 Response regulator receiver domain AV939_01290 PF00072 Response regulator receiver domain AV939_01290 PF09456 RcsC Alpha-Beta-Loop (ABL) AV939_01290 PF00512 His Kinase A (phospho-acceptor) domain AV939_01290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_01295 PF08668 HDOD domain AV939_01295 PF00563 EAL domain AV939_01300 PF00701 Dihydrodipicolinate synthetase family AV939_01320 PF16874 Glycosyl hydrolase family 36 C-terminal domain AV939_01320 PF16875 Glycosyl hydrolase family 36 N-terminal domain AV939_01325 PF00474 Sodium:solute symporter family AV939_01345 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AV939_01345 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AV939_01350 PF00455 DeoR C terminal sensor domain AV939_01350 PF08220 DeoR-like helix-turn-helix domain AV939_01355 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AV939_01355 PF01266 FAD dependent oxidoreductase AV939_01385 PF03958 Bacterial type II/III secretion system short domain AV939_01385 PF00263 Bacterial type II and III secretion system protein AV939_01390 PF01471 Putative peptidoglycan binding domain AV939_01390 PF13401 AAA domain AV939_01400 PF00437 Type II/IV secretion system protein AV939_01400 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AV939_01405 PF00482 Type II secretion system (T2SS), protein F AV939_01415 PF00114 Pilin (bacterial filament) AV939_01415 PF07963 Prokaryotic N-terminal methylation motif AV939_01420 PF00114 Pilin (bacterial filament) AV939_01420 PF07963 Prokaryotic N-terminal methylation motif AV939_01450 PF04085 rod shape-determining protein MreC AV939_01455 PF04093 rod shape-determining protein MreD AV939_01460 PF02545 Maf-like protein AV939_01465 PF10150 Ribonuclease E/G family AV939_01465 PF00575 S1 RNA binding domain AV939_01475 PF00795 Carbon-nitrogen hydrolase AV939_01480 PF01523 Putative modulator of DNA gyrase AV939_01490 PF04751 Protein of unknown function (DUF615) AV939_01495 PF01523 Putative modulator of DNA gyrase AV939_01505 PF02929 Beta galactosidase small chain AV939_01505 PF02837 Glycosyl hydrolases family 2, sugar binding domain AV939_01505 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AV939_01505 PF00703 Glycosyl hydrolases family 2 AV939_01505 PF16353 Domain of unknown function(DUF4981) AV939_01510 PF00072 Response regulator receiver domain AV939_01510 PF00486 Transcriptional regulatory protein, C terminal AV939_01515 PF00512 His Kinase A (phospho-acceptor) domain AV939_01515 PF00497 Bacterial extracellular solute-binding proteins, family 3 AV939_01515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_01520 PF08323 Starch synthase catalytic domain AV939_01520 PF00534 Glycosyl transferases group 1 AV939_01525 PF08468 Methyltransferase small domain N-terminal AV939_01525 PF05175 Methyltransferase small domain AV939_01530 PF02390 Putative methyltransferase AV939_01540 PF14815 NUDIX domain AV939_01540 PF00730 HhH-GPD superfamily base excision DNA repair protein AV939_01540 PF00633 Helix-hairpin-helix motif AV939_01540 PF10576 Iron-sulfur binding domain of endonuclease III AV939_01545 PF04362 Bacterial Fe(2+) trafficking AV939_01580 PF00486 Transcriptional regulatory protein, C terminal AV939_01580 PF00072 Response regulator receiver domain AV939_01590 PF17200 Single Cache domain 2 AV939_01590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_01590 PF00672 HAMP domain AV939_01595 PF00072 Response regulator receiver domain AV939_01600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_01600 PF09078 CheY binding AV939_01600 PF02895 Signal transducing histidine kinase, homodimeric domain AV939_01600 PF01627 Hpt domain AV939_01600 PF01584 CheW-like domain AV939_01605 PF01584 CheW-like domain AV939_01610 PF13426 PAS domain AV939_01610 PF08447 PAS fold AV939_01610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_01615 PF01739 CheR methyltransferase, SAM binding domain AV939_01615 PF03705 CheR methyltransferase, all-alpha domain AV939_01620 PF03975 CheD chemotactic sensory transduction AV939_01625 PF00072 Response regulator receiver domain AV939_01625 PF01339 CheB methylesterase AV939_01640 PF01435 Peptidase family M48 AV939_01655 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AV939_01655 PF00356 Bacterial regulatory proteins, lacI family AV939_01665 PF01204 Trehalase AV939_01675 PF13419 Haloacid dehalogenase-like hydrolase AV939_01680 PF08448 PAS fold AV939_01680 PF00512 His Kinase A (phospho-acceptor) domain AV939_01680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_01680 PF13426 PAS domain AV939_01680 PF00072 Response regulator receiver domain AV939_01705 PF00356 Bacterial regulatory proteins, lacI family AV939_01710 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AV939_01710 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AV939_01720 PF03825 Nucleoside H+ symporter AV939_01730 PF00732 GMC oxidoreductase AV939_01730 PF05199 GMC oxidoreductase AV939_01770 PF00465 Iron-containing alcohol dehydrogenase AV939_01775 PF00300 Histidine phosphatase superfamily (branch 1) AV939_01780 PF00694 Aconitase C-terminal domain AV939_01780 PF00330 Aconitase family (aconitate hydratase) AV939_01790 PF00437 Type II/IV secretion system protein AV939_01795 PF00338 Ribosomal protein S10p/S20e AV939_01800 PF00297 Ribosomal protein L3 AV939_01805 PF00573 Ribosomal protein L4/L1 family AV939_01810 PF00276 Ribosomal protein L23 AV939_01815 PF03947 Ribosomal Proteins L2, C-terminal domain AV939_01815 PF00181 Ribosomal Proteins L2, RNA binding domain AV939_01820 PF00203 Ribosomal protein S19 AV939_01825 PF00237 Ribosomal protein L22p/L17e AV939_01830 PF07650 KH domain AV939_01830 PF00189 Ribosomal protein S3, C-terminal domain AV939_01835 PF00252 Ribosomal protein L16p/L10e AV939_01840 PF00831 Ribosomal L29 protein AV939_01845 PF00366 Ribosomal protein S17 AV939_01850 PF00534 Glycosyl transferases group 1 AV939_01850 PF13439 Glycosyltransferase Family 4 AV939_01855 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AV939_01860 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AV939_01860 PF00534 Glycosyl transferases group 1 AV939_01880 PF02743 Cache domain AV939_01880 PF00672 HAMP domain AV939_01880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_01885 PF01432 Peptidase family M3 AV939_01895 PF00551 Formyl transferase AV939_01895 PF01842 ACT domain AV939_01905 PF00270 DEAD/DEAH box helicase AV939_01905 PF04408 Helicase associated domain (HA2) AV939_01905 PF08482 ATP-dependent helicase C-terminal AV939_01905 PF00271 Helicase conserved C-terminal domain AV939_01910 PF13406 Transglycosylase SLT domain AV939_01920 PF00912 Transglycosylase AV939_01920 PF00905 Penicillin binding protein transpeptidase domain AV939_01920 PF14814 Bifunctional transglycosylase second domain AV939_01930 PF05661 Protein of unknown function (DUF808) AV939_01950 PF00543 Nitrogen regulatory protein P-II AV939_01955 PF00909 Ammonium Transporter Family AV939_01965 PF04261 Dyp-type peroxidase family AV939_01970 PF00672 HAMP domain AV939_01970 PF00211 Adenylate and Guanylate cyclase catalytic domain AV939_01975 PF00202 Aminotransferase class-III AV939_01980 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AV939_01980 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AV939_01985 PF00440 Bacterial regulatory proteins, tetR family AV939_01995 PF00873 AcrB/AcrD/AcrF family AV939_02005 PF00512 His Kinase A (phospho-acceptor) domain AV939_02005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_02005 PF01627 Hpt domain AV939_02005 PF00072 Response regulator receiver domain AV939_02005 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AV939_02005 PF00672 HAMP domain AV939_02010 PF00521 DNA gyrase/topoisomerase IV, subunit A AV939_02010 PF03989 DNA gyrase C-terminal domain, beta-propeller AV939_02020 PF00563 EAL domain AV939_02020 PF03707 Bacterial signalling protein N terminal repeat AV939_02020 PF00990 Diguanylate cyclase, GGDEF domain AV939_02030 PF00171 Aldehyde dehydrogenase family AV939_02035 PF04958 Arginine N-succinyltransferase beta subunit AV939_02040 PF00202 Aminotransferase class-III AV939_02050 PF00117 Glutamine amidotransferase class-I AV939_02055 PF00579 tRNA synthetases class I (W and Y) AV939_02060 PF00834 Ribulose-phosphate 3 epimerase family AV939_02080 PF02086 D12 class N6 adenine-specific DNA methyltransferase AV939_02090 PF01761 3-dehydroquinate synthase AV939_02095 PF01202 Shikimate kinase AV939_02100 PF11741 AMIN domain AV939_02100 PF00263 Bacterial type II and III secretion system protein AV939_02100 PF07660 Secretin and TonB N terminus short domain AV939_02100 PF03958 Bacterial type II/III secretion system short domain AV939_02125 PF17092 Penicillin-binding protein OB-like domain AV939_02125 PF00912 Transglycosylase AV939_02125 PF00905 Penicillin binding protein transpeptidase domain AV939_02130 PF00390 Malic enzyme, N-terminal domain AV939_02130 PF03949 Malic enzyme, NAD binding domain AV939_02135 PF02798 Glutathione S-transferase, N-terminal domain AV939_02170 PF00990 Diguanylate cyclase, GGDEF domain AV939_02170 PF03707 Bacterial signalling protein N terminal repeat AV939_02170 PF00563 EAL domain AV939_02175 PF00583 Acetyltransferase (GNAT) family AV939_02175 PF00696 Amino acid kinase family AV939_02180 PF14698 Argininosuccinate lyase C-terminal AV939_02180 PF00206 Lyase AV939_02185 PF00764 Arginosuccinate synthase AV939_02190 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AV939_02190 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AV939_02195 PF00696 Amino acid kinase family AV939_02200 PF01118 Semialdehyde dehydrogenase, NAD binding domain AV939_02200 PF02774 Semialdehyde dehydrogenase, dimerisation domain AV939_02205 PF02142 MGS-like domain AV939_02215 PF02107 Flagellar L-ring protein AV939_02230 PF00072 Response regulator receiver domain AV939_02230 PF00486 Transcriptional regulatory protein, C terminal AV939_02235 PF00512 His Kinase A (phospho-acceptor) domain AV939_02235 PF00672 HAMP domain AV939_02235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_02235 PF16527 Two-component sensor protein CpxA, periplasmic domain AV939_02240 PF12146 Serine aminopeptidase, S33 AV939_02245 PF00588 SpoU rRNA Methylase family AV939_02250 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AV939_02250 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AV939_02255 PF02556 Preprotein translocase subunit SecB AV939_02260 PF00462 Glutaredoxin AV939_02270 PF01551 Peptidase family M23 AV939_02280 PF04748 Divergent polysaccharide deacetylase AV939_02290 PF03009 Glycerophosphoryl diester phosphodiesterase family AV939_02300 PF02666 Phosphatidylserine decarboxylase AV939_02305 PF03193 RsgA GTPase AV939_02310 PF00929 Exonuclease AV939_02325 PF07715 TonB-dependent Receptor Plug Domain AV939_02325 PF00593 TonB dependent receptor AV939_02330 PF13181 Tetratricopeptide repeat AV939_02345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AV939_02345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AV939_02345 PF00205 Thiamine pyrophosphate enzyme, central domain AV939_02350 PF10369 Small subunit of acetolactate synthase AV939_02360 PF02416 mttA/Hcf106 family AV939_02365 PF02416 mttA/Hcf106 family AV939_02370 PF00902 Sec-independent protein translocase protein (TatC) AV939_02380 PF01026 TatD related DNase AV939_02385 PF00990 Diguanylate cyclase, GGDEF domain AV939_02385 PF07694 5TMR of 5TMR-LYT AV939_02390 PF00490 Delta-aminolevulinic acid dehydratase AV939_02395 PF02541 Ppx/GppA phosphatase family AV939_02400 PF00271 Helicase conserved C-terminal domain AV939_02400 PF00270 DEAD/DEAH box helicase AV939_02405 PF00085 Thioredoxin AV939_02410 PF07497 Rho termination factor, RNA-binding domain AV939_02410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AV939_02410 PF07498 Rho termination factor, N-terminal domain AV939_02420 PF00072 Response regulator receiver domain AV939_02420 PF00512 His Kinase A (phospho-acceptor) domain AV939_02420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_02420 PF09308 LuxQ, periplasmic AV939_02425 PF06965 Na+/H+ antiporter 1 AV939_02430 PF00731 AIR carboxylase AV939_02435 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AV939_02435 PF02222 ATP-grasp domain AV939_02450 PF00210 Ferritin-like domain AV939_02455 PF07995 Glucose / Sorbosone dehydrogenase AV939_02465 PF00085 Thioredoxin AV939_02475 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AV939_02480 PF00709 Adenylosuccinate synthetase AV939_02485 PF00171 Aldehyde dehydrogenase family AV939_02505 PF03553 Na+/H+ antiporter family AV939_02510 PF00933 Glycosyl hydrolase family 3 N terminal domain AV939_02525 PF07075 Protein of unknown function (DUF1343) AV939_02530 PF01380 SIS domain AV939_02535 PF00842 Alanine racemase, C-terminal domain AV939_02535 PF01168 Alanine racemase, N-terminal domain AV939_02550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AV939_02565 PF12729 Four helix bundle sensory module for signal transduction AV939_02565 PF00672 HAMP domain AV939_02565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_02585 PF00583 Acetyltransferase (GNAT) family AV939_02595 PF03358 NADPH-dependent FMN reductase AV939_02625 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AV939_02630 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AV939_02730 PF00550 Phosphopantetheine attachment site AV939_02735 PF00023 Ankyrin repeat AV939_02805 PF00561 alpha/beta hydrolase fold AV939_02810 PF12806 Acetyl-CoA dehydrogenase C-terminal like AV939_02810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV939_02810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV939_02810 PF02770 Acyl-CoA dehydrogenase, middle domain AV939_02815 PF00108 Thiolase, N-terminal domain AV939_02815 PF02803 Thiolase, C-terminal domain AV939_02820 PF00378 Enoyl-CoA hydratase/isomerase AV939_02820 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AV939_02820 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AV939_02825 PF00561 alpha/beta hydrolase fold AV939_02845 PF08240 Alcohol dehydrogenase GroES-like domain AV939_02845 PF00107 Zinc-binding dehydrogenase AV939_02855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV939_02855 PF02770 Acyl-CoA dehydrogenase, middle domain AV939_02855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV939_02865 PF00593 TonB dependent receptor AV939_02865 PF07715 TonB-dependent Receptor Plug Domain AV939_02885 PF04055 Radical SAM superfamily AV939_02885 PF06969 HemN C-terminal domain AV939_02890 PF03459 TOBE domain AV939_02890 PF00005 ABC transporter AV939_02895 PF00528 Binding-protein-dependent transport system inner membrane component AV939_02905 PF02391 MoaE protein AV939_02910 PF02597 ThiS family AV939_02915 PF01967 MoaC family AV939_02920 PF00994 Probable molybdopterin binding domain AV939_02925 PF00899 ThiF family AV939_02985 PF00589 Phage integrase family AV939_02985 PF13495 Phage integrase, N-terminal SAM-like domain AV939_02990 PF00108 Thiolase, N-terminal domain AV939_02990 PF02803 Thiolase, C-terminal domain AV939_02995 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AV939_02995 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AV939_02995 PF00378 Enoyl-CoA hydratase/isomerase AV939_03000 PF01464 Transglycosylase SLT domain AV939_03000 PF14718 Soluble lytic murein transglycosylase L domain AV939_03005 PF00557 Metallopeptidase family M24 AV939_03015 PF00348 Polyprenyl synthetase AV939_03020 PF00829 Ribosomal prokaryotic L21 protein AV939_03025 PF01016 Ribosomal L27 protein AV939_03030 PF01018 GTP1/OBG AV939_03030 PF01926 50S ribosome-binding GTPase AV939_03040 PF09055 Nickel-containing superoxide dismutase AV939_03060 PF00186 Dihydrofolate reductase AV939_03065 PF04539 Sigma-70 region 3 AV939_03065 PF04545 Sigma-70, region 4 AV939_03065 PF00140 Sigma-70 factor, region 1.2 AV939_03065 PF04542 Sigma-70 region 2 AV939_03070 PF01476 LysM domain AV939_03070 PF01551 Peptidase family M23 AV939_03075 PF09335 SNARE associated Golgi protein AV939_03085 PF01975 Survival protein SurE AV939_03090 PF01142 tRNA pseudouridine synthase D (TruD) AV939_03095 PF02542 YgbB family AV939_03100 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AV939_03105 PF04977 Septum formation initiator AV939_03115 PF00672 HAMP domain AV939_03115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_03115 PF17200 Single Cache domain 2 AV939_03120 PF00171 Aldehyde dehydrogenase family AV939_03120 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AV939_03120 PF14850 DNA-binding domain of Proline dehydrogenase AV939_03120 PF01619 Proline dehydrogenase AV939_03125 PF02321 Outer membrane efflux protein AV939_03130 PF13533 Biotin-lipoyl like AV939_03135 PF00873 AcrB/AcrD/AcrF family AV939_03140 PF00486 Transcriptional regulatory protein, C terminal AV939_03140 PF00072 Response regulator receiver domain AV939_03145 PF00512 His Kinase A (phospho-acceptor) domain AV939_03145 PF00672 HAMP domain AV939_03145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_03150 PF08239 Bacterial SH3 domain AV939_03155 PF01928 CYTH domain AV939_03165 PF02976 DNA mismatch repair enzyme MutH AV939_03170 PF00293 NUDIX domain AV939_03175 PF01590 GAF domain AV939_03175 PF00391 PEP-utilising enzyme, mobile domain AV939_03175 PF02896 PEP-utilising enzyme, TIM barrel domain AV939_03175 PF05524 PEP-utilising enzyme, N-terminal AV939_03180 PF01925 Sulfite exporter TauE/SafE AV939_03185 PF01790 Prolipoprotein diacylglyceryl transferase AV939_03190 PF00303 Thymidylate synthase AV939_03195 PF00072 Response regulator receiver domain AV939_03195 PF01339 CheB methylesterase AV939_03200 PF00990 Diguanylate cyclase, GGDEF domain AV939_03200 PF05230 MASE2 domain AV939_03205 PF09308 LuxQ, periplasmic AV939_03205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_03205 PF00072 Response regulator receiver domain AV939_03205 PF00512 His Kinase A (phospho-acceptor) domain AV939_03210 PF07690 Major Facilitator Superfamily AV939_03225 PF00849 RNA pseudouridylate synthase AV939_03230 PF00176 SNF2 family N-terminal domain AV939_03230 PF18339 RapA N-terminal Tudor like domain 1 AV939_03230 PF12137 RNA polymerase recycling family C-terminal AV939_03230 PF00271 Helicase conserved C-terminal domain AV939_03230 PF18337 RapA N-terminal Tudor like domain AV939_03235 PF13638 PIN domain AV939_03235 PF02562 PhoH-like protein AV939_03245 PF07729 FCD domain AV939_03245 PF00392 Bacterial regulatory proteins, gntR family AV939_03250 PF16347 Domain of unknown function (DUF4976) AV939_03250 PF00884 Sulfatase AV939_03255 PF00171 Aldehyde dehydrogenase family AV939_03265 PF08240 Alcohol dehydrogenase GroES-like domain AV939_03265 PF00107 Zinc-binding dehydrogenase AV939_03270 PF13378 Enolase C-terminal domain-like AV939_03270 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AV939_03275 PF00083 Sugar (and other) transporter AV939_03295 PF00067 Cytochrome P450 AV939_03300 PF00111 2Fe-2S iron-sulfur cluster binding domain AV939_03305 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_03305 PF14759 Reductase C-terminal AV939_03340 PF17992 Agarase CBM like domain AV939_03340 PF02449 Beta-galactosidase AV939_03350 PF00722 Glycosyl hydrolases family 16 AV939_03360 PF17992 Agarase CBM like domain AV939_03360 PF02449 Beta-galactosidase AV939_03365 PF00884 Sulfatase AV939_03395 PF16385 Domain of unknown function AV939_03395 PF00884 Sulfatase AV939_03400 PF07715 TonB-dependent Receptor Plug Domain AV939_03400 PF00593 TonB dependent receptor AV939_03425 PF18206 Porphyranase catalytic subdomain 1 AV939_03430 PF16347 Domain of unknown function (DUF4976) AV939_03430 PF00884 Sulfatase AV939_03435 PF00884 Sulfatase AV939_03445 PF10414 Sirohaem synthase dimerisation region AV939_03445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AV939_03450 PF00271 Helicase conserved C-terminal domain AV939_03450 PF12343 Cold shock protein DEAD box A AV939_03450 PF00270 DEAD/DEAH box helicase AV939_03450 PF03880 DbpA RNA binding domain AV939_03465 PF02321 Outer membrane efflux protein AV939_03470 PF00293 NUDIX domain AV939_03485 PF05728 Uncharacterised protein family (UPF0227) AV939_03490 PF01751 Toprim domain AV939_03490 PF00986 DNA gyrase B subunit, carboxyl terminus AV939_03490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_03490 PF00204 DNA gyrase B AV939_03495 PF00990 Diguanylate cyclase, GGDEF domain AV939_03495 PF00563 EAL domain AV939_03495 PF03707 Bacterial signalling protein N terminal repeat AV939_03500 PF00512 His Kinase A (phospho-acceptor) domain AV939_03500 PF01590 GAF domain AV939_03500 PF00360 Phytochrome region AV939_03500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_03500 PF08446 PAS fold AV939_03505 PF13419 Haloacid dehalogenase-like hydrolase AV939_03525 PF04055 Radical SAM superfamily AV939_03535 PF00152 tRNA synthetases class II (D, K and N) AV939_03540 PF00593 TonB dependent receptor AV939_03540 PF07715 TonB-dependent Receptor Plug Domain AV939_03555 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AV939_03560 PF05175 Methyltransferase small domain AV939_03570 PF01722 BolA-like protein AV939_03575 PF01569 PAP2 superfamily AV939_03585 PF03861 ANTAR domain AV939_03585 PF08376 Nitrate and nitrite sensing AV939_03595 PF01740 STAS domain AV939_03595 PF00916 Sulfate permease family AV939_03600 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_03600 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AV939_03600 PF04324 BFD-like [2Fe-2S] binding domain AV939_03600 PF18267 Rubredoxin NAD+ reductase C-terminal domain AV939_03600 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AV939_03605 PF13806 Rieske-like [2Fe-2S] domain AV939_03610 PF00384 Molybdopterin oxidoreductase AV939_03610 PF01568 Molydopterin dinucleotide binding domain AV939_03610 PF04324 BFD-like [2Fe-2S] binding domain AV939_03610 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AV939_03615 PF10414 Sirohaem synthase dimerisation region AV939_03615 PF14824 Sirohaem biosynthesis protein central AV939_03615 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AV939_03620 PF00591 Glycosyl transferase family, a/b domain AV939_03620 PF02885 Glycosyl transferase family, helical bundle domain AV939_03625 PF13426 PAS domain AV939_03625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_03625 PF08447 PAS fold AV939_03630 PF00005 ABC transporter AV939_03635 PF00528 Binding-protein-dependent transport system inner membrane component AV939_03640 PF00005 ABC transporter AV939_03655 PF01323 DSBA-like thioredoxin domain AV939_03660 PF00593 TonB dependent receptor AV939_03660 PF07715 TonB-dependent Receptor Plug Domain AV939_03665 PF01636 Phosphotransferase enzyme family AV939_03670 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AV939_03670 PF13746 4Fe-4S dicluster domain AV939_03670 PF12801 4Fe-4S binding domain AV939_03685 PF12806 Acetyl-CoA dehydrogenase C-terminal like AV939_03685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV939_03685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV939_03685 PF02770 Acyl-CoA dehydrogenase, middle domain AV939_03710 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AV939_03710 PF13378 Enolase C-terminal domain-like AV939_03715 PF00596 Class II Aldolase and Adducin N-terminal domain AV939_03720 PF00293 NUDIX domain AV939_03725 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV939_03730 PF00873 AcrB/AcrD/AcrF family AV939_03745 PF00672 HAMP domain AV939_03745 PF02743 Cache domain AV939_03745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_03750 PF03979 Sigma-70 factor, region 1.1 AV939_03750 PF04545 Sigma-70, region 4 AV939_03750 PF04546 Sigma-70, non-essential region AV939_03750 PF00140 Sigma-70 factor, region 1.2 AV939_03750 PF04542 Sigma-70 region 2 AV939_03750 PF04539 Sigma-70 region 3 AV939_03755 PF01807 CHC2 zinc finger AV939_03755 PF08278 DNA primase DnaG DnaB-binding AV939_03755 PF10410 DnaB-helicase binding domain of primase AV939_03755 PF08275 DNA primase catalytic core, N-terminal domain AV939_03760 PF09424 Yqey-like protein AV939_03765 PF01165 Ribosomal protein S21 AV939_03770 PF00814 Glycoprotease family AV939_03780 PF02660 Glycerol-3-phosphate acyltransferase AV939_03785 PF02152 Dihydroneopterin aldolase AV939_03795 PF02673 Bacitracin resistance protein BacA AV939_03800 PF01230 HIT domain AV939_03815 PF03594 Benzoate membrane transport protein AV939_03820 PF01381 Helix-turn-helix AV939_03820 PF07883 Cupin domain AV939_03825 PF04381 Putative exonuclease, RdgC AV939_03830 PF00497 Bacterial extracellular solute-binding proteins, family 3 AV939_03830 PF00512 His Kinase A (phospho-acceptor) domain AV939_03830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_03835 PF00486 Transcriptional regulatory protein, C terminal AV939_03835 PF00072 Response regulator receiver domain AV939_03840 PF11808 Phosphate regulon sensor protein PhoR AV939_03840 PF00989 PAS fold AV939_03840 PF00512 His Kinase A (phospho-acceptor) domain AV939_03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_03845 PF12849 PBP superfamily domain AV939_03870 PF01618 MotA/TolQ/ExbB proton channel family AV939_03875 PF01618 MotA/TolQ/ExbB proton channel family AV939_03880 PF02472 Biopolymer transport protein ExbD/TolR AV939_03885 PF03544 Gram-negative bacterial TonB protein C-terminal AV939_03895 PF09411 Lipid A 3-O-deacylase (PagL) AV939_03900 PF00072 Response regulator receiver domain AV939_03905 PF00672 HAMP domain AV939_03905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_03905 PF00512 His Kinase A (phospho-acceptor) domain AV939_03905 PF00072 Response regulator receiver domain AV939_03905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AV939_03905 PF01627 Hpt domain AV939_03910 PF13193 AMP-binding enzyme C-terminal domain AV939_03910 PF00501 AMP-binding enzyme AV939_03920 PF07995 Glucose / Sorbosone dehydrogenase AV939_03925 PF00330 Aconitase family (aconitate hydratase) AV939_03925 PF11791 Aconitate B N-terminal domain AV939_03925 PF06434 Aconitate hydratase 2 N-terminus AV939_03935 PF11791 Aconitate B N-terminal domain AV939_03935 PF00330 Aconitase family (aconitate hydratase) AV939_03935 PF06434 Aconitate hydratase 2 N-terminus AV939_03945 PF00696 Amino acid kinase family AV939_03945 PF01842 ACT domain AV939_03950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_03950 PF00672 HAMP domain AV939_03955 PF00149 Calcineurin-like phosphoesterase AV939_03960 PF04379 ApaG domain AV939_03965 PF00398 Ribosomal RNA adenine dimethylase AV939_03970 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AV939_03975 PF00639 PPIC-type PPIASE domain AV939_03975 PF09312 SurA N-terminal domain AV939_03980 PF03968 OstA-like protein AV939_03980 PF04453 LPS transport system D AV939_03985 PF05099 Tellurite resistance protein TerB AV939_03985 PF00226 DnaJ domain AV939_03990 PF00589 Phage integrase family AV939_03990 PF02899 Phage integrase, N-terminal SAM-like domain AV939_03995 PF13098 Thioredoxin-like domain AV939_03995 PF10411 Disulfide bond isomerase protein N-terminus AV939_04000 PF17768 RecJ OB domain AV939_04000 PF02272 DHHA1 domain AV939_04000 PF01368 DHH family AV939_04010 PF11967 Recombination protein O N terminal AV939_04010 PF02565 Recombination protein O C terminal AV939_04015 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AV939_04020 PF01648 4'-phosphopantetheinyl transferase superfamily AV939_04025 PF05958 tRNA (Uracil-5-)-methyltransferase AV939_04030 PF13291 ACT domain AV939_04030 PF04607 Region found in RelA / SpoT proteins AV939_04030 PF02824 TGS domain AV939_04035 PF03819 MazG nucleotide pyrophosphohydrolase domain AV939_04050 PF00572 Ribosomal protein L13 AV939_04055 PF00380 Ribosomal protein S9/S16 AV939_04060 PF08281 Sigma-70, region 4 AV939_04060 PF04542 Sigma-70 region 2 AV939_04070 PF00593 TonB dependent receptor AV939_04070 PF07715 TonB-dependent Receptor Plug Domain AV939_04080 PF01546 Peptidase family M20/M25/M40 AV939_04085 PF00355 Rieske [2Fe-2S] domain AV939_04085 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AV939_04090 PF00033 Cytochrome b/b6/petB AV939_04090 PF00032 Cytochrome b(C-terminal)/b6/petD AV939_04095 PF02167 Cytochrome C1 family AV939_04100 PF02798 Glutathione S-transferase, N-terminal domain AV939_04100 PF00043 Glutathione S-transferase, C-terminal domain AV939_04105 PF04386 Stringent starvation protein B AV939_04110 PF09334 tRNA synthetases class I (M) AV939_04110 PF01588 Putative tRNA binding domain AV939_04110 PF08264 Anticodon-binding domain of tRNA AV939_04115 PF12833 Helix-turn-helix domain AV939_04125 PF00571 CBS domain AV939_04125 PF03448 MgtE intracellular N domain AV939_04125 PF01769 Divalent cation transporter AV939_04130 PF00381 PTS HPr component phosphorylation site AV939_04135 PF03668 P-loop ATPase protein family AV939_04140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AV939_04145 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AV939_04150 PF04552 Sigma-54, DNA binding domain AV939_04150 PF00309 Sigma-54 factor, Activator interacting domain (AID) AV939_04150 PF04963 Sigma-54 factor, core binding domain AV939_04155 PF00005 ABC transporter AV939_04155 PF12399 Branched-chain amino acid ATP-binding cassette transporter AV939_04175 PF00571 CBS domain AV939_04175 PF01380 SIS domain AV939_04180 PF01699 Sodium/calcium exchanger protein AV939_04185 PF00005 ABC transporter AV939_04190 PF02405 Permease MlaE AV939_04195 PF02470 MlaD protein AV939_04200 PF05494 MlaC protein AV939_04210 PF01722 BolA-like protein AV939_04215 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AV939_04220 PF13180 PDZ domain AV939_04225 PF13180 PDZ domain AV939_04225 PF00595 PDZ domain AV939_04235 PF03969 AFG1-like ATPase AV939_04240 PF01709 Transcriptional regulator AV939_04250 PF12833 Helix-turn-helix domain AV939_04265 PF07549 SecD/SecF GG Motif AV939_04265 PF02355 Protein export membrane protein AV939_04270 PF02080 TrkA-C domain AV939_04270 PF03471 Transporter associated domain AV939_04270 PF00999 Sodium/hydrogen exchanger family AV939_04280 PF03707 Bacterial signalling protein N terminal repeat AV939_04280 PF00563 EAL domain AV939_04280 PF00990 Diguanylate cyclase, GGDEF domain AV939_04280 PF13188 PAS domain AV939_04285 PF00072 Response regulator receiver domain AV939_04285 PF09308 LuxQ, periplasmic AV939_04285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_04285 PF00512 His Kinase A (phospho-acceptor) domain AV939_04290 PF13458 Periplasmic binding protein AV939_04295 PF06719 AraC-type transcriptional regulator N-terminus AV939_04295 PF12833 Helix-turn-helix domain AV939_04300 PF00465 Iron-containing alcohol dehydrogenase AV939_04320 PF02772 S-adenosylmethionine synthetase, central domain AV939_04320 PF00438 S-adenosylmethionine synthetase, N-terminal domain AV939_04320 PF02773 S-adenosylmethionine synthetase, C-terminal domain AV939_04325 PF02780 Transketolase, C-terminal domain AV939_04325 PF02779 Transketolase, pyrimidine binding domain AV939_04325 PF00456 Transketolase, thiamine diphosphate binding domain AV939_04330 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV939_04330 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AV939_04335 PF00162 Phosphoglycerate kinase AV939_04340 PF00274 Fructose-bisphosphate aldolase class-I AV939_04345 PF00326 Prolyl oligopeptidase family AV939_04345 PF07676 WD40-like Beta Propeller Repeat AV939_04350 PF02541 Ppx/GppA phosphatase family AV939_04355 PF13090 Polyphosphate kinase C-terminal domain 2 AV939_04355 PF13089 Polyphosphate kinase N-terminal domain AV939_04355 PF02503 Polyphosphate kinase middle domain AV939_04355 PF17941 Polyphosphate kinase C-terminal domain 1 AV939_04365 PF00528 Binding-protein-dependent transport system inner membrane component AV939_04370 PF00528 Binding-protein-dependent transport system inner membrane component AV939_04375 PF00005 ABC transporter AV939_04380 PF01895 PhoU domain AV939_04385 PF01384 Phosphate transporter family AV939_04395 PF03466 LysR substrate binding domain AV939_04395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_04400 PF04542 Sigma-70 region 2 AV939_04400 PF12680 SnoaL-like domain AV939_04400 PF08281 Sigma-70, region 4 AV939_04420 PF03006 Haemolysin-III related AV939_04425 PF00990 Diguanylate cyclase, GGDEF domain AV939_04425 PF03707 Bacterial signalling protein N terminal repeat AV939_04425 PF00563 EAL domain AV939_04440 PF00083 Sugar (and other) transporter AV939_04445 PF12833 Helix-turn-helix domain AV939_04450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AV939_04450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AV939_04460 PF00553 Cellulose binding domain AV939_04460 PF00801 PKD domain AV939_04460 PF02013 Cellulose or protein binding domain AV939_04460 PF00759 Glycosyl hydrolase family 9 AV939_04460 PF02927 Cellulase N-terminal ig-like domain AV939_04465 PF12833 Helix-turn-helix domain AV939_04470 PF04820 Tryptophan halogenase AV939_04480 PF01915 Glycosyl hydrolase family 3 C-terminal domain AV939_04480 PF14310 Fibronectin type III-like domain AV939_04480 PF07691 PA14 domain AV939_04480 PF00933 Glycosyl hydrolase family 3 N terminal domain AV939_04485 PF01047 MarR family AV939_04490 PF02566 OsmC-like protein AV939_04495 PF01433 Peptidase family M1 domain AV939_04505 PF09186 Domain of unknown function (DUF1949) AV939_04505 PF01205 Uncharacterized protein family UPF0029 AV939_04510 PF08447 PAS fold AV939_04510 PF13426 PAS domain AV939_04510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_04515 PF00149 Calcineurin-like phosphoesterase AV939_04515 PF12320 Type 5 capsule protein repressor C-terminal domain AV939_04520 PF13476 AAA domain AV939_04525 PF05230 MASE2 domain AV939_04525 PF00990 Diguanylate cyclase, GGDEF domain AV939_04535 PF01869 BadF/BadG/BcrA/BcrD ATPase family AV939_04540 PF01979 Amidohydrolase family AV939_04545 PF11856 Protein of unknown function (DUF3376) AV939_04545 PF01734 Patatin-like phospholipase AV939_04550 PF00005 ABC transporter AV939_04550 PF12848 ABC transporter AV939_04570 PF07715 TonB-dependent Receptor Plug Domain AV939_04570 PF00593 TonB dependent receptor AV939_04585 PF01734 Patatin-like phospholipase AV939_04610 PF00593 TonB dependent receptor AV939_04615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_04615 PF03466 LysR substrate binding domain AV939_04655 PF04172 LrgB-like family AV939_04660 PF00072 Response regulator receiver domain AV939_04685 PF06969 HemN C-terminal domain AV939_04685 PF04055 Radical SAM superfamily AV939_04690 PF01725 Ham1 family AV939_04695 PF00271 Helicase conserved C-terminal domain AV939_04695 PF00270 DEAD/DEAH box helicase AV939_04700 PF01743 Poly A polymerase head domain AV939_04700 PF12627 Probable RNA and SrmB- binding site of polymerase A AV939_04705 PF01471 Putative peptidoglycan binding domain AV939_04705 PF13401 AAA domain AV939_04715 PF11849 Domain of unknown function (DUF3369) AV939_04720 PF00694 Aconitase C-terminal domain AV939_04725 PF00330 Aconitase family (aconitate hydratase) AV939_04730 PF00180 Isocitrate/isopropylmalate dehydrogenase AV939_04735 PF00682 HMGL-like AV939_04735 PF08502 LeuA allosteric (dimerisation) domain AV939_04740 PF00561 alpha/beta hydrolase fold AV939_04755 PF00113 Enolase, C-terminal TIM barrel domain AV939_04755 PF03952 Enolase, N-terminal domain AV939_04760 PF00117 Glutamine amidotransferase class-I AV939_04760 PF06418 CTP synthase N-terminus AV939_04765 PF01624 MutS domain I AV939_04765 PF00488 MutS domain V AV939_04765 PF05190 MutS family domain IV AV939_04765 PF05188 MutS domain II AV939_04765 PF05192 MutS domain III AV939_04770 PF02464 Competence-damaged protein AV939_04775 PF00154 recA bacterial DNA recombination protein AV939_04780 PF00005 ABC transporter AV939_04785 PF12679 ABC-2 family transporter protein AV939_04805 PF00005 ABC transporter AV939_04810 PF03379 CcmB protein AV939_04815 PF01578 Cytochrome C assembly protein AV939_04820 PF04995 Heme exporter protein D (CcmD) AV939_04825 PF03100 CcmE AV939_04830 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AV939_04830 PF01578 Cytochrome C assembly protein AV939_04835 PF08534 Redoxin AV939_04840 PF03918 Cytochrome C biogenesis protein AV939_04850 PF04333 MlaA lipoprotein AV939_04855 PF16363 GDP-mannose 4,6 dehydratase AV939_04865 PF00854 POT family AV939_04875 PF00005 ABC transporter AV939_04880 PF01061 ABC-2 type transporter AV939_04885 PF10531 SLBB domain AV939_04885 PF02563 Polysaccharide biosynthesis/export protein AV939_04895 PF00953 Glycosyl transferase family 4 AV939_04900 PF00535 Glycosyl transferase family 2 AV939_04910 PF00483 Nucleotidyl transferase AV939_04915 PF10531 SLBB domain AV939_04920 PF00180 Isocitrate/isopropylmalate dehydrogenase AV939_04920 PF18324 Hypothetical protein TT1725 AV939_04935 PF11892 Domain of unknown function (DUF3412) AV939_04935 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AV939_04935 PF03641 Possible lysine decarboxylase AV939_04940 PF00990 Diguanylate cyclase, GGDEF domain AV939_04940 PF00072 Response regulator receiver domain AV939_04945 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AV939_04945 PF14489 QueF-like protein AV939_04950 PF07348 Syd protein (SUKH-2) AV939_04975 PF00817 impB/mucB/samB family AV939_04975 PF11799 impB/mucB/samB family C-terminal domain AV939_04975 PF13438 Domain of unknown function (DUF4113) AV939_04980 PF00717 Peptidase S24-like AV939_05015 PF00849 RNA pseudouridylate synthase AV939_05020 PF00258 Flavodoxin AV939_05025 PF00132 Bacterial transferase hexapeptide (six repeats) AV939_05025 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AV939_05025 PF14602 Hexapeptide repeat of succinyl-transferase AV939_05035 PF00557 Metallopeptidase family M24 AV939_05040 PF00318 Ribosomal protein S2 AV939_05045 PF00889 Elongation factor TS AV939_05050 PF00696 Amino acid kinase family AV939_05055 PF01765 Ribosome recycling factor AV939_05060 PF01255 Putative undecaprenyl diphosphate synthase AV939_05070 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AV939_05070 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AV939_05070 PF13288 DXP reductoisomerase C-terminal domain AV939_05075 PF17820 PDZ domain AV939_05075 PF02163 Peptidase family M50 AV939_05080 PF01103 Surface antigen AV939_05080 PF07244 Surface antigen variable number repeat AV939_05090 PF07977 FabA-like domain AV939_05095 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AV939_05095 PF00132 Bacterial transferase hexapeptide (six repeats) AV939_05100 PF02684 Lipid-A-disaccharide synthetase AV939_05105 PF01351 Ribonuclease HII AV939_05110 PF01336 OB-fold nucleic acid binding domain AV939_05110 PF02811 PHP domain AV939_05110 PF14579 Helix-hairpin-helix motif AV939_05110 PF07733 Bacterial DNA polymerase III alpha NTPase domain AV939_05110 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AV939_05115 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AV939_05120 PF11734 TilS substrate C-terminal domain AV939_05120 PF09179 TilS substrate binding domain AV939_05120 PF01171 PP-loop family AV939_05125 PF03707 Bacterial signalling protein N terminal repeat AV939_05125 PF00563 EAL domain AV939_05125 PF00990 Diguanylate cyclase, GGDEF domain AV939_05130 PF00999 Sodium/hydrogen exchanger family AV939_05130 PF02254 TrkA-N domain AV939_05130 PF02080 TrkA-C domain AV939_05140 PF14437 MafB19-like deaminase AV939_05145 PF00497 Bacterial extracellular solute-binding proteins, family 3 AV939_05145 PF01464 Transglycosylase SLT domain AV939_05150 PF02769 AIR synthase related protein, C-terminal domain AV939_05150 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AV939_05150 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AV939_05155 PF01713 Smr domain AV939_05180 PF01548 Transposase AV939_05180 PF02371 Transposase IS116/IS110/IS902 family AV939_05185 PF00270 DEAD/DEAH box helicase AV939_05185 PF00271 Helicase conserved C-terminal domain AV939_05190 PF01144 Coenzyme A transferase AV939_05195 PF01144 Coenzyme A transferase AV939_05200 PF03466 LysR substrate binding domain AV939_05200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_05215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_05215 PF03466 LysR substrate binding domain AV939_05220 PF03313 Serine dehydratase alpha chain AV939_05220 PF03315 Serine dehydratase beta chain AV939_05225 PF00293 NUDIX domain AV939_05230 PF04715 Anthranilate synthase component I, N terminal region AV939_05230 PF00425 chorismate binding enzyme AV939_05240 PF02646 RmuC family AV939_05245 PF00082 Subtilase family AV939_05245 PF02225 PA domain AV939_05245 PF05922 Peptidase inhibitor I9 AV939_05245 PF13860 FlgD Ig-like domain AV939_05250 PF00676 Dehydrogenase E1 component AV939_05255 PF02780 Transketolase, C-terminal domain AV939_05255 PF02779 Transketolase, pyrimidine binding domain AV939_05260 PF00364 Biotin-requiring enzyme AV939_05260 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AV939_05260 PF02817 e3 binding domain AV939_05265 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AV939_05270 PF00069 Protein kinase domain AV939_05280 PF00132 Bacterial transferase hexapeptide (six repeats) AV939_05285 PF00266 Aminotransferase class-V AV939_05295 PF13185 GAF domain AV939_05305 PF17516 ProQ C-terminal domain AV939_05305 PF04352 ProQ/FINO family AV939_05310 PF00595 PDZ domain AV939_05310 PF03572 Peptidase family S41 AV939_05310 PF11818 C-terminal domain of tail specific protease (DUF3340) AV939_05310 PF17804 Tail specific protease N-terminal domain AV939_05315 PF00209 Sodium:neurotransmitter symporter family AV939_05325 PF11940 Domain of unknown function (DUF3458) Ig-like fold AV939_05325 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AV939_05325 PF01433 Peptidase family M1 domain AV939_05340 PF07044 Protein of unknown function (DUF1329) AV939_05355 PF05088 Bacterial NAD-glutamate dehydrogenase AV939_05360 PF01180 Dihydroorotate dehydrogenase AV939_05365 PF10672 S-adenosylmethionine-dependent methyltransferase AV939_05365 PF01170 Putative RNA methylase family UPF0020 AV939_05365 PF02926 THUMP domain AV939_05385 PF04957 Ribosome modulation factor AV939_05390 PF07977 FabA-like domain AV939_05400 PF03441 FAD binding domain of DNA photolyase AV939_05400 PF00875 DNA photolyase AV939_05405 PF03441 FAD binding domain of DNA photolyase AV939_05405 PF00875 DNA photolyase AV939_05410 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AV939_05435 PF01219 Prokaryotic diacylglycerol kinase AV939_05440 PF00582 Universal stress protein family AV939_05450 PF01645 Conserved region in glutamate synthase AV939_05460 PF00210 Ferritin-like domain AV939_05465 PF00210 Ferritin-like domain AV939_05475 PF00115 Cytochrome C and Quinol oxidase polypeptide I AV939_05490 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AV939_05490 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AV939_05500 PF00403 Heavy-metal-associated domain AV939_05515 PF13545 Crp-like helix-turn-helix domain AV939_05515 PF00027 Cyclic nucleotide-binding domain AV939_05520 PF00582 Universal stress protein family AV939_05525 PF01171 PP-loop family AV939_05530 PF01734 Patatin-like phospholipase AV939_05550 PF01810 LysE type translocator AV939_05555 PF02146 Sir2 family AV939_05560 PF00581 Rhodanese-like domain AV939_05565 PF08534 Redoxin AV939_05610 PF01066 CDP-alcohol phosphatidyltransferase AV939_05615 PF02151 UvrB/uvrC motif AV939_05615 PF08459 UvrC Helix-hairpin-helix N-terminal AV939_05615 PF01541 GIY-YIG catalytic domain AV939_05620 PF00196 Bacterial regulatory proteins, luxR family AV939_05620 PF00072 Response regulator receiver domain AV939_05625 PF02678 Pirin AV939_05625 PF17954 Quercetinase C-terminal cupin domain AV939_05635 PF03781 Sulfatase-modifying factor enzyme 1 AV939_05635 PF12867 DinB superfamily AV939_05655 PF00512 His Kinase A (phospho-acceptor) domain AV939_05655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_05655 PF08521 Two-component sensor kinase N-terminal AV939_05660 PF00486 Transcriptional regulatory protein, C terminal AV939_05660 PF00072 Response regulator receiver domain AV939_05675 PF00144 Beta-lactamase AV939_05685 PF01027 Inhibitor of apoptosis-promoting Bax1 AV939_05690 PF02635 DsrE/DsrF-like family AV939_05695 PF02635 DsrE/DsrF-like family AV939_05705 PF04358 DsrC like protein AV939_05715 PF02403 Seryl-tRNA synthetase N-terminal domain AV939_05715 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AV939_05720 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AV939_05725 PF12002 MgsA AAA+ ATPase C terminal AV939_05725 PF16193 AAA C-terminal domain AV939_05725 PF00004 ATPase family associated with various cellular activities (AAA) AV939_05730 PF03548 Outer membrane lipoprotein carrier protein LolA AV939_05735 PF01580 FtsK/SpoIIIE family AV939_05735 PF17854 FtsK alpha domain AV939_05735 PF09397 Ftsk gamma domain AV939_05735 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AV939_05740 PF01037 Lrp/AsnC ligand binding domain AV939_05745 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AV939_05745 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AV939_05750 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AV939_05755 PF18073 Rubredoxin metal binding domain AV939_05760 PF06305 Lipopolysaccharide assembly protein A domain AV939_05770 PF00216 Bacterial DNA-binding protein AV939_05775 PF00575 S1 RNA binding domain AV939_05780 PF02224 Cytidylate kinase AV939_05785 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AV939_05790 PF00266 Aminotransferase class-V AV939_05795 PF03989 DNA gyrase C-terminal domain, beta-propeller AV939_05795 PF00521 DNA gyrase/topoisomerase IV, subunit A AV939_05805 PF03477 ATP cone domain AV939_05805 PF00317 Ribonucleotide reductase, all-alpha domain AV939_05805 PF02867 Ribonucleotide reductase, barrel domain AV939_05810 PF00268 Ribonucleotide reductase, small chain AV939_05815 PF00111 2Fe-2S iron-sulfur cluster binding domain AV939_05820 PF00512 His Kinase A (phospho-acceptor) domain AV939_05820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_05820 PF18698 Histidine kinase sensor domain AV939_05820 PF00989 PAS fold AV939_05820 PF00672 HAMP domain AV939_05825 PF00486 Transcriptional regulatory protein, C terminal AV939_05825 PF00072 Response regulator receiver domain AV939_05850 PF13411 MerR HTH family regulatory protein AV939_05850 PF07739 TipAS antibiotic-recognition domain AV939_05920 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AV939_05945 PF00005 ABC transporter AV939_05960 PF00593 TonB dependent receptor AV939_05960 PF07715 TonB-dependent Receptor Plug Domain AV939_05970 PF00892 EamA-like transporter family AV939_05975 PF01259 SAICAR synthetase AV939_05980 PF06804 NlpB/DapX lipoprotein AV939_05985 PF00701 Dihydrodipicolinate synthetase family AV939_05995 PF00578 AhpC/TSA family AV939_06000 PF01594 AI-2E family transporter AV939_06005 PF01435 Peptidase family M48 AV939_06015 PF03960 ArsC family AV939_06020 PF03358 NADPH-dependent FMN reductase AV939_06035 PF00308 Bacterial dnaA protein AV939_06045 PF02769 AIR synthase related protein, C-terminal domain AV939_06045 PF00586 AIR synthase related protein, N-terminal domain AV939_06050 PF00551 Formyl transferase AV939_06060 PF09317 Domain of unknown function (DUF1974) AV939_06060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV939_06060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV939_06060 PF02770 Acyl-CoA dehydrogenase, middle domain AV939_06070 PF00072 Response regulator receiver domain AV939_06070 PF00196 Bacterial regulatory proteins, luxR family AV939_06075 PF13649 Methyltransferase domain AV939_06080 PF08003 Protein of unknown function (DUF1698) AV939_06085 PF00485 Phosphoribulokinase / Uridine kinase family AV939_06100 PF00128 Alpha amylase, catalytic domain AV939_06105 PF00994 Probable molybdopterin binding domain AV939_06105 PF03453 MoeA N-terminal region (domain I and II) AV939_06105 PF03454 MoeA C-terminal region (domain IV) AV939_06110 PF01554 MatE AV939_06130 PF00291 Pyridoxal-phosphate dependent enzyme AV939_06145 PF00378 Enoyl-CoA hydratase/isomerase AV939_06160 PF02525 Flavodoxin-like fold AV939_06165 PF01053 Cys/Met metabolism PLP-dependent enzyme AV939_06180 PF00155 Aminotransferase class I and II AV939_06185 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AV939_06200 PF02770 Acyl-CoA dehydrogenase, middle domain AV939_06200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV939_06200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV939_06200 PF12806 Acetyl-CoA dehydrogenase C-terminal like AV939_06205 PF12833 Helix-turn-helix domain AV939_06205 PF02311 AraC-like ligand binding domain AV939_06210 PF07715 TonB-dependent Receptor Plug Domain AV939_06210 PF00593 TonB dependent receptor AV939_06220 PF00873 AcrB/AcrD/AcrF family AV939_06225 PF00529 HlyD membrane-fusion protein of T1SS AV939_06225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV939_06235 PF00766 Electron transfer flavoprotein FAD-binding domain AV939_06235 PF01012 Electron transfer flavoprotein domain AV939_06240 PF01012 Electron transfer flavoprotein domain AV939_06250 PF00816 H-NS histone family AV939_06255 PF12697 Alpha/beta hydrolase family AV939_06265 PF00258 Flavodoxin AV939_06270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_06270 PF00672 HAMP domain AV939_06275 PF01475 Ferric uptake regulator family AV939_06280 PF02447 GntP family permease AV939_06290 PF00356 Bacterial regulatory proteins, lacI family AV939_06295 PF01063 Amino-transferase class IV AV939_06300 PF02626 Carboxyltransferase domain, subdomain A and B AV939_06310 PF03746 LamB/YcsF family AV939_06315 PF13509 S1 domain AV939_06315 PF17783 CvfB-like winged helix domain AV939_06320 PF02566 OsmC-like protein AV939_06325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV939_06330 PF00873 AcrB/AcrD/AcrF family AV939_06335 PF00873 AcrB/AcrD/AcrF family AV939_06350 PF00155 Aminotransferase class I and II AV939_06360 PF13286 Phosphohydrolase-associated domain AV939_06360 PF01966 HD domain AV939_06370 PF00174 Oxidoreductase molybdopterin binding domain AV939_06375 PF01794 Ferric reductase like transmembrane component AV939_06380 PF09335 SNARE associated Golgi protein AV939_06390 PF02810 SEC-C motif AV939_06400 PF08267 Cobalamin-independent synthase, N-terminal domain AV939_06400 PF01717 Cobalamin-independent synthase, Catalytic domain AV939_06425 PF09905 DNA-binding protein VF530 AV939_06435 PF00583 Acetyltransferase (GNAT) family AV939_06440 PF00005 ABC transporter AV939_06450 PF01138 3' exoribonuclease family, domain 1 AV939_06450 PF00575 S1 RNA binding domain AV939_06450 PF00013 KH domain AV939_06450 PF03725 3' exoribonuclease family, domain 2 AV939_06450 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AV939_06475 PF00474 Sodium:solute symporter family AV939_06495 PF00781 Diacylglycerol kinase catalytic domain AV939_06505 PF03707 Bacterial signalling protein N terminal repeat AV939_06505 PF00990 Diguanylate cyclase, GGDEF domain AV939_06505 PF00563 EAL domain AV939_06515 PF03840 Preprotein translocase SecG subunit AV939_06520 PF00121 Triosephosphate isomerase AV939_06525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AV939_06525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AV939_06525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AV939_06525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AV939_06530 PF00809 Pterin binding enzyme AV939_06535 PF01434 Peptidase family M41 AV939_06535 PF00004 ATPase family associated with various cellular activities (AAA) AV939_06535 PF17862 AAA+ lid domain AV939_06535 PF06480 FtsH Extracellular AV939_06540 PF01728 FtsJ-like methyltransferase AV939_06545 PF01985 CRS1 / YhbY (CRM) domain AV939_06550 PF00106 short chain dehydrogenase AV939_06555 PF13654 AAA domain AV939_06555 PF05362 Lon protease (S16) C-terminal proteolytic domain AV939_06560 PF00133 tRNA synthetases class I (I, L, M and V) AV939_06560 PF08264 Anticodon-binding domain of tRNA AV939_06560 PF13603 Leucyl-tRNA synthetase, Domain 2 AV939_06570 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AV939_06570 PF06144 DNA polymerase III, delta subunit AV939_06575 PF01467 Cytidylyltransferase-like AV939_06585 PF02590 Predicted SPOUT methyltransferase AV939_06590 PF00905 Penicillin binding protein transpeptidase domain AV939_06590 PF03717 Penicillin-binding Protein dimerisation domain AV939_06595 PF01098 Cell cycle protein AV939_06600 PF03330 Lytic transglycolase AV939_06600 PF05036 Sporulation related domain AV939_06605 PF00768 D-alanyl-D-alanine carboxypeptidase AV939_06605 PF07943 Penicillin-binding protein 5, C-terminal domain AV939_06610 PF04359 Protein of unknown function (DUF493) AV939_06615 PF03099 Biotin/lipoate A/B protein ligase family AV939_06620 PF04055 Radical SAM superfamily AV939_06620 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AV939_06630 PF17763 Glutaminase/Asparaginase C-terminal domain AV939_06630 PF00710 Asparaginase, N-terminal AV939_06640 PF00881 Nitroreductase family AV939_06655 PF01343 Peptidase family S49 AV939_06660 PF17283 SprT-like zinc ribbon domain AV939_06660 PF10263 SprT-like family AV939_06665 PF04217 Protein of unknown function, DUF412 AV939_06675 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_06680 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AV939_06685 PF04377 Arginine-tRNA-protein transferase, C terminus AV939_06685 PF04376 Arginine-tRNA-protein transferase, N terminus AV939_06690 PF01176 Translation initiation factor 1A / IF-1 AV939_06695 PF02861 Clp amino terminal domain, pathogenicity island component AV939_06695 PF00004 ATPase family associated with various cellular activities (AAA) AV939_06695 PF10431 C-terminal, D2-small domain, of ClpB protein AV939_06695 PF07724 AAA domain (Cdc48 subfamily) AV939_06695 PF17871 AAA lid domain AV939_06700 PF02617 ATP-dependent Clp protease adaptor protein ClpS AV939_06705 PF00313 'Cold-shock' DNA-binding domain AV939_06710 PF03971 Monomeric isocitrate dehydrogenase AV939_06715 PF00849 RNA pseudouridylate synthase AV939_06725 PF04356 Protein of unknown function (DUF489) AV939_06730 PF08328 Adenylosuccinate lyase C-terminal AV939_06730 PF00206 Lyase AV939_06735 PF00211 Adenylate and Guanylate cyclase catalytic domain AV939_06740 PF08007 Cupin superfamily protein AV939_06755 PF02913 FAD linked oxidases, C-terminal domain AV939_06755 PF13183 4Fe-4S dicluster domain AV939_06755 PF01565 FAD binding domain AV939_06760 PF06865 Pyrimidine/purine nucleoside phosphorylase AV939_06765 PF00144 Beta-lactamase AV939_06765 PF11954 Domain of unknown function (DUF3471) AV939_06810 PF03551 Transcriptional regulator PadR-like family AV939_06845 PF14592 Chondroitinase B AV939_06850 PF01202 Shikimate kinase AV939_06875 PF00356 Bacterial regulatory proteins, lacI family AV939_06880 PF03547 Membrane transport protein AV939_06890 PF01799 [2Fe-2S] binding domain AV939_06890 PF00111 2Fe-2S iron-sulfur cluster binding domain AV939_06895 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AV939_06900 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AV939_06900 PF02896 PEP-utilising enzyme, TIM barrel domain AV939_06900 PF00391 PEP-utilising enzyme, mobile domain AV939_06905 PF03618 Kinase/pyrophosphorylase AV939_06920 PF14552 Tautomerase enzyme AV939_06935 PF04191 Phospholipid methyltransferase AV939_06940 PF06271 RDD family AV939_06960 PF00990 Diguanylate cyclase, GGDEF domain AV939_06960 PF00072 Response regulator receiver domain AV939_06965 PF13460 NAD(P)H-binding AV939_06975 PF01026 TatD related DNase AV939_06980 PF09115 DNA polymerase III, delta subunit, C terminal AV939_06985 PF02223 Thymidylate kinase AV939_06990 PF02618 YceG-like family AV939_06995 PF01063 Amino-transferase class IV AV939_07000 PF00109 Beta-ketoacyl synthase, N-terminal domain AV939_07000 PF02801 Beta-ketoacyl synthase, C-terminal domain AV939_07005 PF00550 Phosphopantetheine attachment site AV939_07015 PF00698 Acyl transferase domain AV939_07020 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AV939_07020 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AV939_07025 PF02504 Fatty acid synthesis protein AV939_07030 PF01783 Ribosomal L32p protein family AV939_07035 PF02620 Large ribosomal RNA subunit accumulation protein YceD AV939_07040 PF02545 Maf-like protein AV939_07045 PF13419 Haloacid dehalogenase-like hydrolase AV939_07050 PF00849 RNA pseudouridylate synthase AV939_07050 PF01479 S4 domain AV939_07055 PF10150 Ribonuclease E/G family AV939_07055 PF12111 Polyribonucleotide phosphorylase C terminal AV939_07055 PF00575 S1 RNA binding domain AV939_07070 PF13419 Haloacid dehalogenase-like hydrolase AV939_07075 PF13673 Acetyltransferase (GNAT) domain AV939_07085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_07085 PF03466 LysR substrate binding domain AV939_07095 PF02798 Glutathione S-transferase, N-terminal domain AV939_07110 PF00962 Adenosine/AMP deaminase AV939_07120 PF03466 LysR substrate binding domain AV939_07120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_07130 PF01396 Topoisomerase DNA binding C4 zinc finger AV939_07130 PF01751 Toprim domain AV939_07130 PF08272 Topoisomerase I zinc-ribbon-like AV939_07130 PF01131 DNA topoisomerase AV939_07135 PF04996 Succinylarginine dihydrolase AV939_07145 PF00375 Sodium:dicarboxylate symporter family AV939_07150 PF02687 FtsX-like permease family AV939_07150 PF12704 MacB-like periplasmic core domain AV939_07155 PF00005 ABC transporter AV939_07160 PF00563 EAL domain AV939_07160 PF12792 CSS motif domain associated with EAL AV939_07190 PF00929 Exonuclease AV939_07195 PF00075 RNase H AV939_07205 PF17785 PUA-like domain AV939_07205 PF10672 S-adenosylmethionine-dependent methyltransferase AV939_07220 PF00270 DEAD/DEAH box helicase AV939_07220 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AV939_07220 PF00271 Helicase conserved C-terminal domain AV939_07220 PF04408 Helicase associated domain (HA2) AV939_07220 PF11898 Domain of unknown function (DUF3418) AV939_07250 PF02333 Phytase AV939_07260 PF00072 Response regulator receiver domain AV939_07260 PF01627 Hpt domain AV939_07260 PF00512 His Kinase A (phospho-acceptor) domain AV939_07260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_07260 PF00672 HAMP domain AV939_07260 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AV939_07265 PF08411 Exonuclease C-terminal AV939_07265 PF00929 Exonuclease AV939_07275 PF17151 Periplasmic sensor domain AV939_07275 PF00990 Diguanylate cyclase, GGDEF domain AV939_07280 PF02803 Thiolase, C-terminal domain AV939_07280 PF00108 Thiolase, N-terminal domain AV939_07285 PF13411 MerR HTH family regulatory protein AV939_07290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV939_07290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV939_07290 PF02770 Acyl-CoA dehydrogenase, middle domain AV939_07295 PF01039 Carboxyl transferase domain AV939_07300 PF00378 Enoyl-CoA hydratase/isomerase AV939_07305 PF00289 Biotin carboxylase, N-terminal domain AV939_07305 PF00364 Biotin-requiring enzyme AV939_07305 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AV939_07305 PF02785 Biotin carboxylase C-terminal domain AV939_07310 PF00682 HMGL-like AV939_07320 PF00563 EAL domain AV939_07320 PF00990 Diguanylate cyclase, GGDEF domain AV939_07320 PF03707 Bacterial signalling protein N terminal repeat AV939_07335 PF01156 Inosine-uridine preferring nucleoside hydrolase AV939_07340 PF00483 Nucleotidyl transferase AV939_07350 PF07690 Major Facilitator Superfamily AV939_07385 PF03372 Endonuclease/Exonuclease/phosphatase family AV939_07400 PF02687 FtsX-like permease family AV939_07400 PF12704 MacB-like periplasmic core domain AV939_07410 PF00271 Helicase conserved C-terminal domain AV939_07410 PF03461 TRCF domain AV939_07410 PF17757 UvrB interaction domain AV939_07410 PF00270 DEAD/DEAH box helicase AV939_07410 PF02559 CarD-like/TRCF domain AV939_07420 PF01923 Cobalamin adenosyltransferase AV939_07425 PF00939 Sodium:sulfate symporter transmembrane region AV939_07430 PF00933 Glycosyl hydrolase family 3 N terminal domain AV939_07435 PF01804 Penicillin amidase AV939_07440 PF04073 Aminoacyl-tRNA editing domain AV939_07450 PF00216 Bacterial DNA-binding protein AV939_07455 PF03483 B3/4 domain AV939_07455 PF03147 Ferredoxin-fold anticodon binding domain AV939_07455 PF01588 Putative tRNA binding domain AV939_07455 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AV939_07455 PF03484 tRNA synthetase B5 domain AV939_07460 PF01409 tRNA synthetases class II core domain (F) AV939_07460 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AV939_07465 PF01757 Acyltransferase family AV939_07495 PF00535 Glycosyl transferase family 2 AV939_07500 PF00535 Glycosyl transferase family 2 AV939_07510 PF13477 Glycosyl transferase 4-like AV939_07510 PF00534 Glycosyl transferases group 1 AV939_07515 PF00132 Bacterial transferase hexapeptide (six repeats) AV939_07515 PF06426 Serine acetyltransferase, N-terminal AV939_07525 PF00534 Glycosyl transferases group 1 AV939_07525 PF13439 Glycosyltransferase Family 4 AV939_07535 PF03707 Bacterial signalling protein N terminal repeat AV939_07535 PF00990 Diguanylate cyclase, GGDEF domain AV939_07535 PF00563 EAL domain AV939_07565 PF13614 AAA domain AV939_07570 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AV939_07570 PF10531 SLBB domain AV939_07570 PF02563 Polysaccharide biosynthesis/export protein AV939_07580 PF02397 Bacterial sugar transferase AV939_07590 PF00453 Ribosomal protein L20 AV939_07595 PF01632 Ribosomal protein L35 AV939_07600 PF00707 Translation initiation factor IF-3, C-terminal domain AV939_07600 PF05198 Translation initiation factor IF-3, N-terminal domain AV939_07605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AV939_07605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AV939_07605 PF03129 Anticodon binding domain AV939_07605 PF02824 TGS domain AV939_07645 PF01425 Amidase AV939_07655 PF01925 Sulfite exporter TauE/SafE AV939_07660 PF00266 Aminotransferase class-V AV939_07665 PF07687 Peptidase dimerisation domain AV939_07665 PF01546 Peptidase family M20/M25/M40 AV939_07675 PF00962 Adenosine/AMP deaminase AV939_07680 PF00860 Permease family AV939_07685 PF07715 TonB-dependent Receptor Plug Domain AV939_07685 PF00593 TonB dependent receptor AV939_07695 PF00072 Response regulator receiver domain AV939_07695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_07695 PF00512 His Kinase A (phospho-acceptor) domain AV939_07695 PF09308 LuxQ, periplasmic AV939_07700 PF00990 Diguanylate cyclase, GGDEF domain AV939_07700 PF00072 Response regulator receiver domain AV939_07705 PF00563 EAL domain AV939_07705 PF00990 Diguanylate cyclase, GGDEF domain AV939_07705 PF03707 Bacterial signalling protein N terminal repeat AV939_07715 PF00962 Adenosine/AMP deaminase AV939_07720 PF00860 Permease family AV939_07735 PF08362 YcdC-like protein, C-terminal region AV939_07735 PF00440 Bacterial regulatory proteins, tetR family AV939_07740 PF01799 [2Fe-2S] binding domain AV939_07740 PF00111 2Fe-2S iron-sulfur cluster binding domain AV939_07745 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV939_07745 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AV939_07760 PF00576 HIUase/Transthyretin family AV939_07765 PF01979 Amidohydrolase family AV939_07775 PF00990 Diguanylate cyclase, GGDEF domain AV939_07775 PF05231 MASE1 AV939_07775 PF08448 PAS fold AV939_07775 PF13426 PAS domain AV939_07775 PF08447 PAS fold AV939_07775 PF00563 EAL domain AV939_07795 PF00990 Diguanylate cyclase, GGDEF domain AV939_07795 PF17158 Membrane-associated sensor, integral membrane domain AV939_07810 PF04209 homogentisate 1,2-dioxygenase AV939_07815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AV939_07835 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AV939_07840 PF03960 ArsC family AV939_07845 PF07687 Peptidase dimerisation domain AV939_07845 PF01546 Peptidase family M20/M25/M40 AV939_07860 PF01906 Putative heavy-metal-binding AV939_07870 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AV939_07875 PF00990 Diguanylate cyclase, GGDEF domain AV939_07875 PF03707 Bacterial signalling protein N terminal repeat AV939_07875 PF00563 EAL domain AV939_07880 PF00343 Carbohydrate phosphorylase AV939_07885 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AV939_07885 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AV939_07885 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AV939_07885 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AV939_07890 PF17206 SeqA protein N-terminal domain AV939_07890 PF03925 SeqA protein C-terminal domain AV939_07895 PF17863 AAA lid domain AV939_07895 PF07726 ATPase family associated with various cellular activities (AAA) AV939_07905 PF11992 Domain of unknown function (DUF3488) AV939_07905 PF01841 Transglutaminase-like superfamily AV939_07905 PF13559 Domain of unknown function (DUF4129) AV939_07910 PF01226 Formate/nitrite transporter AV939_07915 PF00069 Protein kinase domain AV939_07915 PF03793 PASTA domain AV939_07920 PF02560 Cyanate lyase C-terminal domain AV939_07930 PF18125 RlmM ferredoxin-like domain AV939_07930 PF01728 FtsJ-like methyltransferase AV939_07945 PF03466 LysR substrate binding domain AV939_07945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_07960 PF04247 Invasion gene expression up-regulator, SirB AV939_07965 PF11849 Domain of unknown function (DUF3369) AV939_07970 PF17827 PrmC N-terminal domain AV939_07970 PF13847 Methyltransferase domain AV939_07975 PF00472 RF-1 domain AV939_07975 PF03462 PCRF domain AV939_07980 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AV939_07980 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AV939_07980 PF01488 Shikimate / quinate 5-dehydrogenase AV939_07985 PF03550 Outer membrane lipoprotein LolB AV939_07990 PF08544 GHMP kinases C terminal AV939_07990 PF00288 GHMP kinases N terminal domain AV939_08000 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AV939_08000 PF14572 Phosphoribosyl synthetase-associated domain AV939_08005 PF00563 EAL domain AV939_08005 PF00990 Diguanylate cyclase, GGDEF domain AV939_08005 PF03707 Bacterial signalling protein N terminal repeat AV939_08005 PF13188 PAS domain AV939_08015 PF00107 Zinc-binding dehydrogenase AV939_08015 PF08240 Alcohol dehydrogenase GroES-like domain AV939_08020 PF01386 Ribosomal L25p family AV939_08020 PF14693 Ribosomal protein TL5, C-terminal domain AV939_08025 PF01195 Peptidyl-tRNA hydrolase AV939_08030 PF01926 50S ribosome-binding GTPase AV939_08030 PF06071 Protein of unknown function (DUF933) AV939_08035 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AV939_08060 PF01235 Sodium:alanine symporter family AV939_08065 PF01613 Flavin reductase like domain AV939_08080 PF01494 FAD binding domain AV939_08085 PF01938 TRAM domain AV939_08085 PF00919 Uncharacterized protein family UPF0004 AV939_08085 PF04055 Radical SAM superfamily AV939_08090 PF02562 PhoH-like protein AV939_08095 PF02130 Uncharacterized protein family UPF0054 AV939_08100 PF00571 CBS domain AV939_08100 PF03471 Transporter associated domain AV939_08105 PF00795 Carbon-nitrogen hydrolase AV939_08110 PF07085 DRTGG domain AV939_08110 PF01515 Phosphate acetyl/butaryl transferase AV939_08115 PF00871 Acetokinase family AV939_08120 PF00011 Hsp20/alpha crystallin family AV939_08140 PF12729 Four helix bundle sensory module for signal transduction AV939_08140 PF00672 HAMP domain AV939_08140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_08145 PF03449 Transcription elongation factor, N-terminal AV939_08145 PF01272 Transcription elongation factor, GreA/GreB, C-term AV939_08150 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AV939_08150 PF02142 MGS-like domain AV939_08150 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AV939_08155 PF00117 Glutamine amidotransferase class-I AV939_08155 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AV939_08160 PF05173 Dihydrodipicolinate reductase, C-terminus AV939_08160 PF01113 Dihydrodipicolinate reductase, N-terminus AV939_08170 PF00501 AMP-binding enzyme AV939_08170 PF13193 AMP-binding enzyme C-terminal domain AV939_08170 PF16177 Acetyl-coenzyme A synthetase N-terminus AV939_08175 PF00563 EAL domain AV939_08175 PF00990 Diguanylate cyclase, GGDEF domain AV939_08175 PF00360 Phytochrome region AV939_08175 PF01590 GAF domain AV939_08180 PF01322 Cytochrome C' AV939_08185 PF00684 DnaJ central domain AV939_08185 PF00226 DnaJ domain AV939_08185 PF01556 DnaJ C terminal domain AV939_08190 PF00012 Hsp70 protein AV939_08195 PF01025 GrpE AV939_08200 PF00512 His Kinase A (phospho-acceptor) domain AV939_08200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_08200 PF09308 LuxQ, periplasmic AV939_08200 PF00072 Response regulator receiver domain AV939_08205 PF00196 Bacterial regulatory proteins, luxR family AV939_08205 PF00072 Response regulator receiver domain AV939_08210 PF07715 TonB-dependent Receptor Plug Domain AV939_08210 PF00593 TonB dependent receptor AV939_08220 PF00561 alpha/beta hydrolase fold AV939_08240 PF02463 RecF/RecN/SMC N terminal domain AV939_08245 PF04355 SmpA / OmlA family AV939_08250 PF05724 Thiopurine S-methyltransferase (TPMT) AV939_08255 PF04286 Protein of unknown function (DUF445) AV939_08260 PF03960 ArsC family AV939_08270 PF14602 Hexapeptide repeat of succinyl-transferase AV939_08270 PF12464 Maltose acetyltransferase AV939_08275 PF00248 Aldo/keto reductase family AV939_08285 PF01479 S4 domain AV939_08285 PF00849 RNA pseudouridylate synthase AV939_08290 PF04079 Segregation and condensation complex subunit ScpB AV939_08295 PF02616 Segregation and condensation protein ScpA AV939_08300 PF01300 Telomere recombination AV939_08305 PF02811 PHP domain AV939_08310 PF04715 Anthranilate synthase component I, N terminal region AV939_08310 PF00425 chorismate binding enzyme AV939_08315 PF00117 Glutamine amidotransferase class-I AV939_08320 PF00591 Glycosyl transferase family, a/b domain AV939_08320 PF02885 Glycosyl transferase family, helical bundle domain AV939_08325 PF00218 Indole-3-glycerol phosphate synthase AV939_08325 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AV939_08330 PF00291 Pyridoxal-phosphate dependent enzyme AV939_08335 PF00290 Tryptophan synthase alpha chain AV939_08340 PF03795 YCII-related domain AV939_08355 PF00486 Transcriptional regulatory protein, C terminal AV939_08355 PF00072 Response regulator receiver domain AV939_08360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_08360 PF08918 PhoQ Sensor AV939_08365 PF01594 AI-2E family transporter AV939_08370 PF02152 Dihydroneopterin aldolase AV939_08375 PF01370 NAD dependent epimerase/dehydratase family AV939_08375 PF08338 Domain of unknown function (DUF1731) AV939_08385 PF00005 ABC transporter AV939_08390 PF13472 GDSL-like Lipase/Acylhydrolase family AV939_08405 PF01207 Dihydrouridine synthase (Dus) AV939_08435 PF00749 tRNA synthetases class I (E and Q), catalytic domain AV939_08455 PF00486 Transcriptional regulatory protein, C terminal AV939_08455 PF00072 Response regulator receiver domain AV939_08465 PF04055 Radical SAM superfamily AV939_08465 PF06463 Molybdenum Cofactor Synthesis C AV939_08470 PF00664 ABC transporter transmembrane region AV939_08470 PF00005 ABC transporter AV939_08485 PF01474 Class-II DAHP synthetase family AV939_08490 PF00005 ABC transporter AV939_08495 PF01032 FecCD transport family AV939_08500 PF01451 Low molecular weight phosphotyrosine protein phosphatase AV939_08505 PF03575 Peptidase family S51 AV939_08515 PF12697 Alpha/beta hydrolase family AV939_08515 PF08241 Methyltransferase domain AV939_08520 PF00155 Aminotransferase class I and II AV939_08525 PF04055 Radical SAM superfamily AV939_08525 PF06968 Biotin and Thiamin Synthesis associated domain AV939_08530 PF00202 Aminotransferase class-III AV939_08545 PF00583 Acetyltransferase (GNAT) family AV939_08550 PF08443 RimK-like ATP-grasp domain AV939_08550 PF18030 RimK PreATP-grasp domain AV939_08555 PF01699 Sodium/calcium exchanger protein AV939_08565 PF01336 OB-fold nucleic acid binding domain AV939_08565 PF00152 tRNA synthetases class II (D, K and N) AV939_08575 PF04403 Paraquat-inducible protein A AV939_08580 PF02470 MlaD protein AV939_08590 PF00990 Diguanylate cyclase, GGDEF domain AV939_08595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV939_08600 PF00873 AcrB/AcrD/AcrF family AV939_08610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_08610 PF03466 LysR substrate binding domain AV939_08615 PF08361 MAATS-type transcriptional repressor, C-terminal region AV939_08615 PF00440 Bacterial regulatory proteins, tetR family AV939_08625 PF00873 AcrB/AcrD/AcrF family AV939_08630 PF00571 CBS domain AV939_08635 PF00107 Zinc-binding dehydrogenase AV939_08635 PF08240 Alcohol dehydrogenase GroES-like domain AV939_08640 PF08240 Alcohol dehydrogenase GroES-like domain AV939_08640 PF00107 Zinc-binding dehydrogenase AV939_08645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_08645 PF03466 LysR substrate binding domain AV939_08650 PF01292 Prokaryotic cytochrome b561 AV939_08655 PF00106 short chain dehydrogenase AV939_08660 PF00296 Luciferase-like monooxygenase AV939_08665 PF01118 Semialdehyde dehydrogenase, NAD binding domain AV939_08665 PF02774 Semialdehyde dehydrogenase, dimerisation domain AV939_08690 PF07690 Major Facilitator Superfamily AV939_08695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_08695 PF00072 Response regulator receiver domain AV939_08695 PF00512 His Kinase A (phospho-acceptor) domain AV939_08695 PF09308 LuxQ, periplasmic AV939_08735 PF00557 Metallopeptidase family M24 AV939_08745 PF00072 Response regulator receiver domain AV939_08745 PF00990 Diguanylate cyclase, GGDEF domain AV939_08750 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AV939_08770 PF02445 Quinolinate synthetase A protein AV939_08790 PF16331 TolA binding protein trimerisation AV939_08790 PF13174 Tetratricopeptide repeat AV939_08795 PF00691 OmpA family AV939_08800 PF04052 TolB amino-terminal domain AV939_08800 PF07676 WD40-like Beta Propeller Repeat AV939_08810 PF02472 Biopolymer transport protein ExbD/TolR AV939_08815 PF01618 MotA/TolQ/ExbB proton channel family AV939_08820 PF03061 Thioesterase superfamily AV939_08825 PF05491 RuvB C-terminal winged helix domain AV939_08825 PF17864 RuvB AAA lid domain AV939_08825 PF05496 Holliday junction DNA helicase RuvB P-loop domain AV939_08840 PF00293 NUDIX domain AV939_08845 PF02938 GAD domain AV939_08845 PF00152 tRNA synthetases class II (D, K and N) AV939_08845 PF01336 OB-fold nucleic acid binding domain AV939_08860 PF00158 Sigma-54 interaction domain AV939_08860 PF00072 Response regulator receiver domain AV939_08870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_08870 PF00512 His Kinase A (phospho-acceptor) domain AV939_08880 PF00990 Diguanylate cyclase, GGDEF domain AV939_08880 PF03707 Bacterial signalling protein N terminal repeat AV939_08880 PF00563 EAL domain AV939_08890 PF00072 Response regulator receiver domain AV939_08890 PF00990 Diguanylate cyclase, GGDEF domain AV939_08900 PF01253 Translation initiation factor SUI1 AV939_08905 PF00072 Response regulator receiver domain AV939_08910 PF00800 Prephenate dehydratase AV939_08910 PF01817 Chorismate mutase type II AV939_08915 PF12729 Four helix bundle sensory module for signal transduction AV939_08915 PF00672 HAMP domain AV939_08915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_08920 PF01817 Chorismate mutase type II AV939_08920 PF02153 Prephenate dehydrogenase AV939_08925 PF00793 DAHP synthetase I family AV939_08930 PF03458 UPF0126 domain AV939_08945 PF01245 Ribosomal protein L19 AV939_08950 PF01746 tRNA (Guanine-1)-methyltransferase AV939_08955 PF05239 PRC-barrel domain AV939_08955 PF01782 RimM N-terminal domain AV939_08960 PF00886 Ribosomal protein S16 AV939_08975 PF01053 Cys/Met metabolism PLP-dependent enzyme AV939_08980 PF00005 ABC transporter AV939_08980 PF00664 ABC transporter transmembrane region AV939_08985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV939_08990 PF00873 AcrB/AcrD/AcrF family AV939_08995 PF03600 Citrate transporter AV939_09025 PF02978 Signal peptide binding domain AV939_09025 PF02881 SRP54-type protein, helical bundle domain AV939_09025 PF00448 SRP54-type protein, GTPase domain AV939_09030 PF01578 Cytochrome C assembly protein AV939_09035 PF00571 CBS domain AV939_09035 PF03471 Transporter associated domain AV939_09035 PF01595 Cyclin M transmembrane N-terminal domain AV939_09045 PF00300 Histidine phosphatase superfamily (branch 1) AV939_09050 PF00675 Insulinase (Peptidase family M16) AV939_09050 PF05193 Peptidase M16 inactive domain AV939_09050 PF16187 Middle or third domain of peptidase_M16 AV939_09055 PF00563 EAL domain AV939_09055 PF00990 Diguanylate cyclase, GGDEF domain AV939_09055 PF03707 Bacterial signalling protein N terminal repeat AV939_09065 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AV939_09065 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AV939_09065 PF00378 Enoyl-CoA hydratase/isomerase AV939_09070 PF02803 Thiolase, C-terminal domain AV939_09070 PF00108 Thiolase, N-terminal domain AV939_09075 PF17863 AAA lid domain AV939_09075 PF07726 ATPase family associated with various cellular activities (AAA) AV939_09080 PF01882 Protein of unknown function DUF58 AV939_09090 PF00092 von Willebrand factor type A domain AV939_09095 PF00092 von Willebrand factor type A domain AV939_09095 PF07584 Aerotolerance regulator N-terminal AV939_09110 PF04545 Sigma-70, region 4 AV939_09110 PF04542 Sigma-70 region 2 AV939_09120 PF17158 Membrane-associated sensor, integral membrane domain AV939_09120 PF00990 Diguanylate cyclase, GGDEF domain AV939_09125 PF00474 Sodium:solute symporter family AV939_09130 PF01507 Phosphoadenosine phosphosulfate reductase family AV939_09140 PF00459 Inositol monophosphatase family AV939_09145 PF00009 Elongation factor Tu GTP binding domain AV939_09150 PF03600 Citrate transporter AV939_09150 PF02080 TrkA-C domain AV939_09175 PF13537 Glutamine amidotransferase domain AV939_09175 PF00733 Asparagine synthase AV939_09185 PF04055 Radical SAM superfamily AV939_09190 PF06508 Queuosine biosynthesis protein QueC AV939_09210 PF04851 Type III restriction enzyme, res subunit AV939_09210 PF02151 UvrB/uvrC motif AV939_09210 PF12344 Ultra-violet resistance protein B AV939_09210 PF17757 UvrB interaction domain AV939_09210 PF00271 Helicase conserved C-terminal domain AV939_09215 PF01554 MatE AV939_09230 PF02508 Rnf-Nqr subunit, membrane protein AV939_09235 PF04060 Putative Fe-S cluster AV939_09240 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AV939_09240 PF12838 4Fe-4S dicluster domain AV939_09240 PF13375 RnfC Barrel sandwich hybrid domain AV939_09240 PF10531 SLBB domain AV939_09245 PF03116 NQR2, RnfD, RnfE family AV939_09255 PF02508 Rnf-Nqr subunit, membrane protein AV939_09260 PF00730 HhH-GPD superfamily base excision DNA repair protein AV939_09260 PF10576 Iron-sulfur binding domain of endonuclease III AV939_09260 PF00633 Helix-hairpin-helix motif AV939_09285 PF00561 alpha/beta hydrolase fold AV939_09290 PF07676 WD40-like Beta Propeller Repeat AV939_09290 PF00326 Prolyl oligopeptidase family AV939_09295 PF04389 Peptidase family M28 AV939_09295 PF02225 PA domain AV939_09305 PF03707 Bacterial signalling protein N terminal repeat AV939_09305 PF00563 EAL domain AV939_09305 PF00990 Diguanylate cyclase, GGDEF domain AV939_09315 PF00313 'Cold-shock' DNA-binding domain AV939_09320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AV939_09325 PF03009 Glycerophosphoryl diester phosphodiesterase family AV939_09330 PF18393 MotY N-terminal domain AV939_09330 PF00691 OmpA family AV939_09335 PF00929 Exonuclease AV939_09340 PF10417 C-terminal domain of 1-Cys peroxiredoxin AV939_09340 PF00578 AhpC/TSA family AV939_09345 PF04324 BFD-like [2Fe-2S] binding domain AV939_09365 PF00593 TonB dependent receptor AV939_09365 PF07715 TonB-dependent Receptor Plug Domain AV939_09370 PF00462 Glutaredoxin AV939_09380 PF08298 PrkA AAA domain AV939_09380 PF06798 PrkA serine protein kinase C-terminal domain AV939_09385 PF04285 Protein of unknown function (DUF444) AV939_09390 PF04293 SpoVR like protein AV939_09405 PF01264 Chorismate synthase AV939_09410 PF05175 Methyltransferase small domain AV939_09415 PF01713 Smr domain AV939_09420 PF00989 PAS fold AV939_09420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_09420 PF00512 His Kinase A (phospho-acceptor) domain AV939_09425 PF00072 Response regulator receiver domain AV939_09425 PF00158 Sigma-54 interaction domain AV939_09425 PF02954 Bacterial regulatory protein, Fis family AV939_09430 PF12704 MacB-like periplasmic core domain AV939_09430 PF02687 FtsX-like permease family AV939_09430 PF00005 ABC transporter AV939_09440 PF00005 ABC transporter AV939_09465 PF00675 Insulinase (Peptidase family M16) AV939_09465 PF05193 Peptidase M16 inactive domain AV939_09475 PF00849 RNA pseudouridylate synthase AV939_09480 PF08546 Ketopantoate reductase PanE/ApbA C terminal AV939_09480 PF02558 Ketopantoate reductase PanE/ApbA AV939_09485 PF00152 tRNA synthetases class II (D, K and N) AV939_09485 PF01336 OB-fold nucleic acid binding domain AV939_09490 PF00472 RF-1 domain AV939_09490 PF03462 PCRF domain AV939_09505 PF01966 HD domain AV939_09510 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AV939_09510 PF06155 Protein of unknown function (DUF971) AV939_09525 PF03707 Bacterial signalling protein N terminal repeat AV939_09525 PF00990 Diguanylate cyclase, GGDEF domain AV939_09525 PF00563 EAL domain AV939_09530 PF05746 DALR anticodon binding domain AV939_09530 PF00750 tRNA synthetases class I (R) AV939_09530 PF03485 Arginyl tRNA synthetase N terminal domain AV939_09535 PF03144 Elongation factor Tu domain 2 AV939_09535 PF16658 Class II release factor RF3, C-terminal domain AV939_09535 PF00009 Elongation factor Tu GTP binding domain AV939_09540 PF03466 LysR substrate binding domain AV939_09540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_09555 PF00583 Acetyltransferase (GNAT) family AV939_09595 PF08351 Domain of unknown function (DUF1726) AV939_09595 PF13718 GNAT acetyltransferase 2 AV939_09595 PF05127 Helicase AV939_09595 PF17176 tRNA-binding domain AV939_09605 PF03544 Gram-negative bacterial TonB protein C-terminal AV939_09610 PF02472 Biopolymer transport protein ExbD/TolR AV939_09615 PF01618 MotA/TolQ/ExbB proton channel family AV939_09620 PF01618 MotA/TolQ/ExbB proton channel family AV939_09655 PF00593 TonB dependent receptor AV939_09655 PF07715 TonB-dependent Receptor Plug Domain AV939_09660 PF13181 Tetratricopeptide repeat AV939_09665 PF00593 TonB dependent receptor AV939_09670 PF03301 Tryptophan 2,3-dioxygenase AV939_09685 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AV939_09685 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AV939_09690 PF01037 Lrp/AsnC ligand binding domain AV939_09695 PF14497 Glutathione S-transferase, C-terminal domain AV939_09695 PF02798 Glutathione S-transferase, N-terminal domain AV939_09705 PF18024 Helix-turn-helix domain AV939_09705 PF00158 Sigma-54 interaction domain AV939_09710 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AV939_09720 PF06667 Phage shock protein B AV939_09725 PF04012 PspA/IM30 family AV939_09730 PF00158 Sigma-54 interaction domain AV939_09730 PF02954 Bacterial regulatory protein, Fis family AV939_09735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AV939_09740 PF00528 Binding-protein-dependent transport system inner membrane component AV939_09745 PF12911 N-terminal TM domain of oligopeptide transport permease C AV939_09745 PF00528 Binding-protein-dependent transport system inner membrane component AV939_09750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AV939_09750 PF00005 ABC transporter AV939_09755 PF00005 ABC transporter AV939_09760 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AV939_09765 PF00682 HMGL-like AV939_09765 PF00364 Biotin-requiring enzyme AV939_09765 PF02436 Conserved carboxylase domain AV939_09775 PF03061 Thioesterase superfamily AV939_09795 PF02599 Global regulator protein family AV939_09815 PF01431 Peptidase family M13 AV939_09815 PF05649 Peptidase family M13 AV939_09820 PF00440 Bacterial regulatory proteins, tetR family AV939_09820 PF13977 BetI-type transcriptional repressor, C-terminal AV939_09830 PF01740 STAS domain AV939_09830 PF00916 Sulfate permease family AV939_09835 PF00484 Carbonic anhydrase AV939_09840 PF03466 LysR substrate binding domain AV939_09840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_09845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_09845 PF03466 LysR substrate binding domain AV939_09855 PF02965 Vitamin B12 dependent methionine synthase, activation domain AV939_09855 PF02607 B12 binding domain AV939_09855 PF02310 B12 binding domain AV939_09855 PF02574 Homocysteine S-methyltransferase AV939_09855 PF00809 Pterin binding enzyme AV939_09860 PF02310 B12 binding domain AV939_09860 PF02965 Vitamin B12 dependent methionine synthase, activation domain AV939_09860 PF02607 B12 binding domain AV939_09860 PF02574 Homocysteine S-methyltransferase AV939_09860 PF00809 Pterin binding enzyme AV939_09865 PF04204 Homoserine O-succinyltransferase AV939_09875 PF01584 CheW-like domain AV939_09885 PF13614 AAA domain AV939_09890 PF00072 Response regulator receiver domain AV939_09890 PF01339 CheB methylesterase AV939_09895 PF02895 Signal transducing histidine kinase, homodimeric domain AV939_09895 PF01584 CheW-like domain AV939_09895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_09895 PF01627 Hpt domain AV939_09895 PF07194 P2 response regulator binding domain AV939_09900 PF04344 Chemotaxis phosphatase, CheZ AV939_09905 PF00072 Response regulator receiver domain AV939_09910 PF04539 Sigma-70 region 3 AV939_09910 PF04545 Sigma-70, region 4 AV939_09910 PF04542 Sigma-70 region 2 AV939_09915 PF10609 NUBPL iron-transfer P-loop NTPase AV939_09920 PF00448 SRP54-type protein, GTPase domain AV939_09925 PF00771 FHIPEP family AV939_09930 PF01312 FlhB HrpN YscU SpaS Family AV939_09935 PF01311 Bacterial export proteins, family 1 AV939_09940 PF01313 Bacterial export proteins, family 3 AV939_09945 PF00813 FliP family AV939_09950 PF04347 Flagellar biosynthesis protein, FliO AV939_09955 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AV939_09960 PF02154 Flagellar motor switch protein FliM AV939_09960 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AV939_09980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AV939_09980 PF18269 T3SS EscN ATPase C-terminal domain AV939_09990 PF14841 FliG middle domain AV939_09990 PF01706 FliG C-terminal domain AV939_09990 PF14842 FliG N-terminal domain AV939_09995 PF01514 Secretory protein of YscJ/FliF family AV939_09995 PF08345 Flagellar M-ring protein C-terminal AV939_10000 PF02049 Flagellar hook-basal body complex protein FliE AV939_10005 PF02954 Bacterial regulatory protein, Fis family AV939_10005 PF00158 Sigma-54 interaction domain AV939_10010 PF00989 PAS fold AV939_10010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_10010 PF00512 His Kinase A (phospho-acceptor) domain AV939_10015 PF02954 Bacterial regulatory protein, Fis family AV939_10015 PF00072 Response regulator receiver domain AV939_10015 PF00158 Sigma-54 interaction domain AV939_10020 PF00669 Bacterial flagellin N-terminal helical region AV939_10020 PF00700 Bacterial flagellin C-terminal helical region AV939_10020 PF08884 Flagellin D3 domain AV939_10025 PF02719 Polysaccharide biosynthesis protein AV939_10030 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AV939_10035 PF02348 Cytidylyltransferase AV939_10045 PF08666 SAF domain AV939_10045 PF03102 NeuB family AV939_10060 PF13193 AMP-binding enzyme C-terminal domain AV939_10060 PF00501 AMP-binding enzyme AV939_10070 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AV939_10085 PF02348 Cytidylyltransferase AV939_10085 PF13472 GDSL-like Lipase/Acylhydrolase family AV939_10100 PF03102 NeuB family AV939_10100 PF08666 SAF domain AV939_10105 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AV939_10110 PF16363 GDP-mannose 4,6 dehydratase AV939_10120 PF17101 Stealth protein CR1, conserved region 1 AV939_10120 PF11380 Stealth protein CR2, conserved region 2 AV939_10120 PF17102 Stealth protein CR3, conserved region 3 AV939_10135 PF02561 Flagellar protein FliS AV939_10140 PF07196 Flagellin hook IN motif AV939_10140 PF07195 Flagellar hook-associated protein 2 C-terminus AV939_10140 PF02465 Flagellar hook-associated protein 2 N-terminus AV939_10145 PF03646 FlaG protein AV939_10150 PF00669 Bacterial flagellin N-terminal helical region AV939_10150 PF07196 Flagellin hook IN motif AV939_10150 PF00700 Bacterial flagellin C-terminal helical region AV939_10155 PF00700 Bacterial flagellin C-terminal helical region AV939_10155 PF07196 Flagellin hook IN motif AV939_10155 PF00669 Bacterial flagellin N-terminal helical region AV939_10160 PF00669 Bacterial flagellin N-terminal helical region AV939_10160 PF07196 Flagellin hook IN motif AV939_10160 PF00700 Bacterial flagellin C-terminal helical region AV939_10175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AV939_10175 PF00460 Flagella basal body rod protein AV939_10180 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AV939_10180 PF10135 Rod binding protein AV939_10185 PF02119 Flagellar P-ring protein AV939_10190 PF02107 Flagellar L-ring protein AV939_10195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AV939_10195 PF00460 Flagella basal body rod protein AV939_10200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AV939_10200 PF00460 Flagella basal body rod protein AV939_10205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AV939_10205 PF07559 Flagellar basal body protein FlaE AV939_10205 PF00460 Flagella basal body rod protein AV939_10210 PF03963 Flagellar hook capping protein - N-terminal region AV939_10210 PF13860 FlgD Ig-like domain AV939_10210 PF13861 FlgD Tudor-like domain AV939_10215 PF00460 Flagella basal body rod protein AV939_10215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AV939_10220 PF00460 Flagella basal body rod protein AV939_10225 PF03705 CheR methyltransferase, all-alpha domain AV939_10225 PF01739 CheR methyltransferase, SAM binding domain AV939_10230 PF00072 Response regulator receiver domain AV939_10230 PF01584 CheW-like domain AV939_10270 PF00196 Bacterial regulatory proteins, luxR family AV939_10270 PF00072 Response regulator receiver domain AV939_10275 PF00529 HlyD membrane-fusion protein of T1SS AV939_10275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV939_10280 PF00005 ABC transporter AV939_10280 PF03412 Peptidase C39 family AV939_10280 PF00664 ABC transporter transmembrane region AV939_10285 PF00691 OmpA family AV939_10285 PF00223 Photosystem I psaA/psaB protein AV939_10370 PF01479 S4 domain AV939_10370 PF00849 RNA pseudouridylate synthase AV939_10390 PF01627 Hpt domain AV939_10390 PF00989 PAS fold AV939_10390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_10390 PF00512 His Kinase A (phospho-acceptor) domain AV939_10390 PF00072 Response regulator receiver domain AV939_10390 PF00497 Bacterial extracellular solute-binding proteins, family 3 AV939_10400 PF00365 Phosphofructokinase AV939_10405 PF04397 LytTr DNA-binding domain AV939_10405 PF00072 Response regulator receiver domain AV939_10410 PF07694 5TMR of 5TMR-LYT AV939_10410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_10410 PF06580 Histidine kinase AV939_10430 PF01476 LysM domain AV939_10430 PF01551 Peptidase family M23 AV939_10440 PF04245 37-kD nucleoid-associated bacterial protein AV939_10445 PF07208 Protein of unknown function (DUF1414) AV939_10450 PF00884 Sulfatase AV939_10450 PF11893 Domain of unknown function (DUF3413) AV939_10455 PF08645 Polynucleotide kinase 3 phosphatase AV939_10460 PF13847 Methyltransferase domain AV939_10465 PF00378 Enoyl-CoA hydratase/isomerase AV939_10470 PF02770 Acyl-CoA dehydrogenase, middle domain AV939_10470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV939_10470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV939_10480 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AV939_10480 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AV939_10485 PF00255 Glutathione peroxidase AV939_10490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AV939_10490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AV939_10500 PF01784 NIF3 (NGG1p interacting factor 3) AV939_10520 PF00440 Bacterial regulatory proteins, tetR family AV939_10525 PF08496 Peptidase family S49 N-terminal AV939_10525 PF01343 Peptidase family S49 AV939_10530 PF01804 Penicillin amidase AV939_10535 PF12262 Bacterial virulence factor lipase N-terminal AV939_10540 PF00106 short chain dehydrogenase AV939_10545 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AV939_10545 PF00749 tRNA synthetases class I (E and Q), catalytic domain AV939_10550 PF00356 Bacterial regulatory proteins, lacI family AV939_10555 PF00686 Starch binding domain AV939_10555 PF00128 Alpha amylase, catalytic domain AV939_10565 PF00128 Alpha amylase, catalytic domain AV939_10565 PF10438 Cyclo-malto-dextrinase C-terminal domain AV939_10565 PF09087 Cyclomaltodextrinase, N-terminal AV939_10570 PF16657 Maltogenic Amylase, C-terminal domain AV939_10570 PF02903 Alpha amylase, N-terminal ig-like domain AV939_10570 PF00128 Alpha amylase, catalytic domain AV939_10585 PF01734 Patatin-like phospholipase AV939_10590 PF03714 Bacterial pullanase-associated domain AV939_10590 PF17967 Pullulanase N2 domain AV939_10590 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AV939_10590 PF18494 Pullulanase Ins domain AV939_10590 PF11852 Domain of unknown function (DUF3372) AV939_10600 PF04820 Tryptophan halogenase AV939_10610 PF02629 CoA binding domain AV939_10610 PF00549 CoA-ligase AV939_10615 PF00549 CoA-ligase AV939_10615 PF08442 ATP-grasp domain AV939_10620 PF00364 Biotin-requiring enzyme AV939_10620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AV939_10620 PF02817 e3 binding domain AV939_10625 PF16870 2-oxoglutarate dehydrogenase C-terminal AV939_10625 PF00676 Dehydrogenase E1 component AV939_10625 PF02779 Transketolase, pyrimidine binding domain AV939_10625 PF16078 2-oxoglutarate dehydrogenase N-terminus AV939_10630 PF13085 2Fe-2S iron-sulfur cluster binding domain AV939_10635 PF00890 FAD binding domain AV939_10635 PF02910 Fumarate reductase flavoprotein C-term AV939_10640 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AV939_10645 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AV939_10650 PF00285 Citrate synthase, C-terminal domain AV939_10660 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AV939_10660 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AV939_10660 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AV939_10660 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AV939_10665 PF13409 Glutathione S-transferase, N-terminal domain AV939_10670 PF01266 FAD dependent oxidoreductase AV939_10675 PF00899 ThiF family AV939_10695 PF00919 Uncharacterized protein family UPF0004 AV939_10695 PF18693 TRAM domain AV939_10695 PF04055 Radical SAM superfamily AV939_10705 PF02348 Cytidylyltransferase AV939_10710 PF03966 Trm112p-like protein AV939_10715 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AV939_10720 PF00664 ABC transporter transmembrane region AV939_10720 PF00005 ABC transporter AV939_10735 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AV939_10735 PF01653 NAD-dependent DNA ligase adenylation domain AV939_10735 PF00533 BRCA1 C Terminus (BRCT) domain AV939_10735 PF12826 Helix-hairpin-helix motif AV939_10735 PF03120 NAD-dependent DNA ligase OB-fold domain AV939_10740 PF04354 ZipA, C-terminal FtsZ-binding domain AV939_10745 PF06470 SMC proteins Flexible Hinge Domain AV939_10745 PF02463 RecF/RecN/SMC N terminal domain AV939_10760 PF13181 Tetratricopeptide repeat AV939_10760 PF07719 Tetratricopeptide repeat AV939_10765 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AV939_10785 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AV939_10785 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_10790 PF07690 Major Facilitator Superfamily AV939_10810 PF05163 DinB family AV939_10815 PF13181 Tetratricopeptide repeat AV939_10825 PF02028 BCCT, betaine/carnitine/choline family transporter AV939_10835 PF03658 RnfH family Ubiquitin AV939_10840 PF03364 Polyketide cyclase / dehydrase and lipid transport AV939_10845 PF01668 SmpB protein AV939_10850 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_10850 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AV939_10860 PF05840 Bacteriophage replication gene A protein (GPA) AV939_10880 PF14659 Phage integrase, N-terminal SAM-like domain AV939_10880 PF00589 Phage integrase family AV939_10905 PF07715 TonB-dependent Receptor Plug Domain AV939_10905 PF00593 TonB dependent receptor AV939_10910 PF07690 Major Facilitator Superfamily AV939_10915 PF00652 Ricin-type beta-trefoil lectin domain AV939_10935 PF05199 GMC oxidoreductase AV939_10935 PF00732 GMC oxidoreductase AV939_10940 PF00171 Aldehyde dehydrogenase family AV939_10950 PF04542 Sigma-70 region 2 AV939_10950 PF08281 Sigma-70, region 4 AV939_10955 PF12146 Serine aminopeptidase, S33 AV939_10975 PF00593 TonB dependent receptor AV939_10975 PF07715 TonB-dependent Receptor Plug Domain AV939_10980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_10980 PF03466 LysR substrate binding domain AV939_11000 PF00990 Diguanylate cyclase, GGDEF domain AV939_11000 PF00563 EAL domain AV939_11000 PF03707 Bacterial signalling protein N terminal repeat AV939_11015 PF00990 Diguanylate cyclase, GGDEF domain AV939_11015 PF01590 GAF domain AV939_11015 PF00563 EAL domain AV939_11015 PF00360 Phytochrome region AV939_11030 PF01066 CDP-alcohol phosphatidyltransferase AV939_11035 PF00005 ABC transporter AV939_11040 PF00528 Binding-protein-dependent transport system inner membrane component AV939_11045 PF13416 Bacterial extracellular solute-binding protein AV939_11055 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_11055 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AV939_11060 PF07715 TonB-dependent Receptor Plug Domain AV939_11060 PF00593 TonB dependent receptor AV939_11075 PF08497 Radical SAM N-terminal AV939_11075 PF11842 Domain of unknown function (DUF3362) AV939_11075 PF04055 Radical SAM superfamily AV939_11100 PF00593 TonB dependent receptor AV939_11100 PF07715 TonB-dependent Receptor Plug Domain AV939_11105 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_11105 PF13192 Thioredoxin domain AV939_11110 PF00578 AhpC/TSA family AV939_11110 PF10417 C-terminal domain of 1-Cys peroxiredoxin AV939_11135 PF00795 Carbon-nitrogen hydrolase AV939_11135 PF00583 Acetyltransferase (GNAT) family AV939_11145 PF12697 Alpha/beta hydrolase family AV939_11150 PF08448 PAS fold AV939_11150 PF00990 Diguanylate cyclase, GGDEF domain AV939_11160 PF05987 Bacterial protein of unknown function (DUF898) AV939_11165 PF00312 Ribosomal protein S15 AV939_11170 PF09157 Pseudouridine synthase II TruB, C-terminal AV939_11170 PF16198 tRNA pseudouridylate synthase B C-terminal domain AV939_11170 PF01509 TruB family pseudouridylate synthase (N terminal domain) AV939_11175 PF02033 Ribosome-binding factor A AV939_11180 PF04760 Translation initiation factor IF-2, N-terminal region AV939_11180 PF11987 Translation-initiation factor 2 AV939_11180 PF00009 Elongation factor Tu GTP binding domain AV939_11180 PF08364 Bacterial translation initiation factor IF-2 associated region AV939_11185 PF08529 NusA N-terminal domain AV939_11185 PF00575 S1 RNA binding domain AV939_11185 PF13184 NusA-like KH domain AV939_11190 PF17384 RimP C-terminal SH3 domain AV939_11190 PF02576 RimP N-terminal domain AV939_11195 PF00072 Response regulator receiver domain AV939_11200 PF00072 Response regulator receiver domain AV939_11200 PF01627 Hpt domain AV939_11200 PF00512 His Kinase A (phospho-acceptor) domain AV939_11200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_11215 PF01329 Pterin 4 alpha carbinolamine dehydratase AV939_11220 PF00593 TonB dependent receptor AV939_11220 PF07715 TonB-dependent Receptor Plug Domain AV939_11225 PF00924 Mechanosensitive ion channel AV939_11245 PF00924 Mechanosensitive ion channel AV939_11250 PF01575 MaoC like domain AV939_11255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_11255 PF03466 LysR substrate binding domain AV939_11265 PF08125 Mannitol dehydrogenase C-terminal domain AV939_11265 PF01232 Mannitol dehydrogenase Rossmann domain AV939_11275 PF13419 Haloacid dehalogenase-like hydrolase AV939_11280 PF04198 Putative sugar-binding domain AV939_11415 PF01627 Hpt domain AV939_11415 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AV939_11415 PF00672 HAMP domain AV939_11415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_11415 PF00512 His Kinase A (phospho-acceptor) domain AV939_11415 PF00072 Response regulator receiver domain AV939_11425 PF00155 Aminotransferase class I and II AV939_11430 PF03435 Saccharopine dehydrogenase NADP binding domain AV939_11445 PF00155 Aminotransferase class I and II AV939_11460 PF13538 UvrD-like helicase C-terminal domain AV939_11465 PF00580 UvrD/REP helicase N-terminal domain AV939_11465 PF12705 PD-(D/E)XK nuclease superfamily AV939_11465 PF13361 UvrD-like helicase C-terminal domain AV939_11470 PF17946 RecC C-terminal domain AV939_11480 PF00501 AMP-binding enzyme AV939_11485 PF03707 Bacterial signalling protein N terminal repeat AV939_11485 PF00563 EAL domain AV939_11485 PF00990 Diguanylate cyclase, GGDEF domain AV939_11490 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AV939_11490 PF12706 Beta-lactamase superfamily domain AV939_11490 PF17770 Ribonuclease J C-terminal domain AV939_11495 PF04337 Protein of unknown function, DUF480 AV939_11510 PF03466 LysR substrate binding domain AV939_11510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_11530 PF01022 Bacterial regulatory protein, arsR family AV939_11540 PF03466 LysR substrate binding domain AV939_11540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_11550 PF00072 Response regulator receiver domain AV939_11550 PF00158 Sigma-54 interaction domain AV939_11550 PF02954 Bacterial regulatory protein, Fis family AV939_11560 PF08446 PAS fold AV939_11560 PF00360 Phytochrome region AV939_11560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_11560 PF01590 GAF domain AV939_11560 PF00512 His Kinase A (phospho-acceptor) domain AV939_11565 PF00072 Response regulator receiver domain AV939_11570 PF09308 LuxQ, periplasmic AV939_11570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_11570 PF00072 Response regulator receiver domain AV939_11570 PF00512 His Kinase A (phospho-acceptor) domain AV939_11600 PF07043 Protein of unknown function (DUF1328) AV939_11620 PF07023 Protein of unknown function (DUF1315) AV939_11630 PF01235 Sodium:alanine symporter family AV939_11635 PF00246 Zinc carboxypeptidase AV939_11635 PF18027 Cytosolic carboxypeptidase N-terminal domain AV939_11640 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AV939_11640 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV939_11650 PF01641 SelR domain AV939_11655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AV939_11655 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AV939_11660 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AV939_11660 PF00128 Alpha amylase, catalytic domain AV939_11665 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AV939_11665 PF02806 Alpha amylase, C-terminal all-beta domain AV939_11665 PF00128 Alpha amylase, catalytic domain AV939_11670 PF02446 4-alpha-glucanotransferase AV939_11675 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AV939_11675 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV939_11680 PF01263 Aldose 1-epimerase AV939_11685 PF01081 KDPG and KHG aldolase AV939_11690 PF02685 Glucokinase AV939_11695 PF00920 Dehydratase family AV939_11700 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AV939_11705 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AV939_11705 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AV939_11710 PF01418 Helix-turn-helix domain, rpiR family AV939_11710 PF01380 SIS domain AV939_11715 PF02887 Pyruvate kinase, alpha/beta domain AV939_11715 PF00224 Pyruvate kinase, barrel domain AV939_11720 PF01048 Phosphorylase superfamily AV939_11765 PF00672 HAMP domain AV939_11765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_11765 PF00512 His Kinase A (phospho-acceptor) domain AV939_11770 PF00072 Response regulator receiver domain AV939_11770 PF00486 Transcriptional regulatory protein, C terminal AV939_11795 PF09347 Domain of unknown function (DUF1989) AV939_11810 PF04962 KduI/IolB family AV939_11815 PF03480 Bacterial extracellular solute-binding protein, family 7 AV939_11825 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AV939_11830 PF00356 Bacterial regulatory proteins, lacI family AV939_11835 PF08666 SAF domain AV939_11835 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AV939_11840 PF02614 Glucuronate isomerase AV939_11845 PF08125 Mannitol dehydrogenase C-terminal domain AV939_11845 PF01232 Mannitol dehydrogenase Rossmann domain AV939_11850 PF00294 pfkB family carbohydrate kinase AV939_11855 PF13472 GDSL-like Lipase/Acylhydrolase family AV939_11865 PF07470 Glycosyl Hydrolase Family 88 AV939_11870 PF00295 Glycosyl hydrolases family 28 AV939_11875 PF01095 Pectinesterase AV939_11880 PF00672 HAMP domain AV939_11880 PF00512 His Kinase A (phospho-acceptor) domain AV939_11880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_11880 PF01627 Hpt domain AV939_11880 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AV939_11880 PF00072 Response regulator receiver domain AV939_11895 PF04231 Endonuclease I AV939_11900 PF11838 ERAP1-like C-terminal domain AV939_11900 PF01433 Peptidase family M1 domain AV939_11905 PF00378 Enoyl-CoA hydratase/isomerase AV939_11925 PF00356 Bacterial regulatory proteins, lacI family AV939_11930 PF13378 Enolase C-terminal domain-like AV939_11930 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AV939_11935 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AV939_11935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AV939_11950 PF00990 Diguanylate cyclase, GGDEF domain AV939_11950 PF03707 Bacterial signalling protein N terminal repeat AV939_11950 PF00563 EAL domain AV939_11965 PF12804 MobA-like NTP transferase domain AV939_11975 PF01625 Peptide methionine sulfoxide reductase AV939_11980 PF02566 OsmC-like protein AV939_11990 PF00080 Copper/zinc superoxide dismutase (SODC) AV939_11995 PF05230 MASE2 domain AV939_11995 PF00990 Diguanylate cyclase, GGDEF domain AV939_12005 PF00072 Response regulator receiver domain AV939_12005 PF00486 Transcriptional regulatory protein, C terminal AV939_12010 PF00672 HAMP domain AV939_12010 PF00512 His Kinase A (phospho-acceptor) domain AV939_12010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_12035 PF01979 Amidohydrolase family AV939_12040 PF01156 Inosine-uridine preferring nucleoside hydrolase AV939_12045 PF07690 Major Facilitator Superfamily AV939_12050 PF02112 cAMP phosphodiesterases class-II AV939_12055 PF01266 FAD dependent oxidoreductase AV939_12070 PF00672 HAMP domain AV939_12070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_12080 PF06628 Catalase-related immune-responsive AV939_12080 PF00199 Catalase AV939_12090 PF01145 SPFH domain / Band 7 family AV939_12110 PF00881 Nitroreductase family AV939_12130 PF00939 Sodium:sulfate symporter transmembrane region AV939_12135 PF00692 dUTPase AV939_12140 PF10609 NUBPL iron-transfer P-loop NTPase AV939_12145 PF08264 Anticodon-binding domain of tRNA AV939_12145 PF09334 tRNA synthetases class I (M) AV939_12145 PF01588 Putative tRNA binding domain AV939_12150 PF08241 Methyltransferase domain AV939_12155 PF16123 Hydroxyacylglutathione hydrolase C-terminus AV939_12155 PF00753 Metallo-beta-lactamase superfamily AV939_12160 PF01476 LysM domain AV939_12160 PF01464 Transglycosylase SLT domain AV939_12170 PF07715 TonB-dependent Receptor Plug Domain AV939_12170 PF00593 TonB dependent receptor AV939_12185 PF04041 beta-1,4-mannooligosaccharide phosphorylase AV939_12195 PF00356 Bacterial regulatory proteins, lacI family AV939_12205 PF00884 Sulfatase AV939_12210 PF09297 NADH pyrophosphatase zinc ribbon domain AV939_12210 PF00293 NUDIX domain AV939_12220 PF02156 Glycosyl hydrolase family 26 AV939_12230 PF00732 GMC oxidoreductase AV939_12230 PF05199 GMC oxidoreductase AV939_12250 PF01406 tRNA synthetases class I (C) catalytic domain AV939_12250 PF09190 DALR domain AV939_12255 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AV939_12260 PF00149 Calcineurin-like phosphoesterase AV939_12265 PF00245 Alkaline phosphatase AV939_12270 PF00245 Alkaline phosphatase AV939_12285 PF01145 SPFH domain / Band 7 family AV939_12285 PF15975 Flotillin AV939_12305 PF00004 ATPase family associated with various cellular activities (AAA) AV939_12305 PF01434 Peptidase family M41 AV939_12305 PF17862 AAA+ lid domain AV939_12305 PF06480 FtsH Extracellular AV939_12310 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AV939_12310 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV939_12315 PF00941 FAD binding domain in molybdopterin dehydrogenase AV939_12315 PF03450 CO dehydrogenase flavoprotein C-terminal domain AV939_12320 PF01799 [2Fe-2S] binding domain AV939_12320 PF00111 2Fe-2S iron-sulfur cluster binding domain AV939_12325 PF05426 Alginate lyase AV939_12325 PF07940 Heparinase II/III-like protein AV939_12330 PF08240 Alcohol dehydrogenase GroES-like domain AV939_12330 PF00107 Zinc-binding dehydrogenase AV939_12340 PF04336 Acyl carrier protein phosphodiesterase AV939_12345 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AV939_12365 PF01026 TatD related DNase AV939_12385 PF00156 Phosphoribosyl transferase domain AV939_12390 PF02674 Colicin V production protein AV939_12395 PF05036 Sporulation related domain AV939_12400 PF02875 Mur ligase family, glutamate ligase domain AV939_12400 PF08245 Mur ligase middle domain AV939_12405 PF01039 Carboxyl transferase domain AV939_12405 PF17848 Acetyl-coA carboxylase zinc finger domain AV939_12410 PF01416 tRNA pseudouridine synthase AV939_12420 PF01118 Semialdehyde dehydrogenase, NAD binding domain AV939_12420 PF02774 Semialdehyde dehydrogenase, dimerisation domain AV939_12425 PF11890 Domain of unknown function (DUF3410) AV939_12425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AV939_12425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AV939_12430 PF00596 Class II Aldolase and Adducin N-terminal domain AV939_12440 PF02801 Beta-ketoacyl synthase, C-terminal domain AV939_12440 PF00109 Beta-ketoacyl synthase, N-terminal domain AV939_12445 PF00990 Diguanylate cyclase, GGDEF domain AV939_12445 PF08448 PAS fold AV939_12450 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AV939_12450 PF01266 FAD dependent oxidoreductase AV939_12480 PF04315 Elongation factor P hydroxylase AV939_12500 PF00042 Globin AV939_12500 PF00970 Oxidoreductase FAD-binding domain AV939_12500 PF00175 Oxidoreductase NAD-binding domain AV939_12505 PF00487 Fatty acid desaturase AV939_12525 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_12525 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AV939_12530 PF00378 Enoyl-CoA hydratase/isomerase AV939_12535 PF00440 Bacterial regulatory proteins, tetR family AV939_12535 PF02909 Tetracyclin repressor-like, C-terminal domain AV939_12540 PF00732 GMC oxidoreductase AV939_12540 PF05199 GMC oxidoreductase AV939_12550 PF06974 Protein of unknown function (DUF1298) AV939_12550 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AV939_12555 PF00440 Bacterial regulatory proteins, tetR family AV939_12560 PF04286 Protein of unknown function (DUF445) AV939_12590 PF00326 Prolyl oligopeptidase family AV939_12590 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AV939_12595 PF00392 Bacterial regulatory proteins, gntR family AV939_12595 PF07840 FadR C-terminal domain AV939_12600 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AV939_12605 PF02600 Disulfide bond formation protein DsbB AV939_12610 PF13302 Acetyltransferase (GNAT) domain AV939_12615 PF03692 Putative zinc- or iron-chelating domain AV939_12620 PF01557 Fumarylacetoacetate (FAA) hydrolase family AV939_12630 PF05166 YcgL domain AV939_12635 PF00570 HRDC domain AV939_12635 PF01612 3'-5' exonuclease AV939_12640 PF13193 AMP-binding enzyme C-terminal domain AV939_12640 PF00501 AMP-binding enzyme AV939_12645 PF12697 Alpha/beta hydrolase family AV939_12660 PF00814 Glycoprotease family AV939_12665 PF06733 DEAD_2 AV939_12665 PF13307 Helicase C-terminal domain AV939_12670 PF00128 Alpha amylase, catalytic domain AV939_12725 PF01634 ATP phosphoribosyltransferase AV939_12725 PF08029 HisG, C-terminal domain AV939_12730 PF00815 Histidinol dehydrogenase AV939_12735 PF00155 Aminotransferase class I and II AV939_12740 PF00475 Imidazoleglycerol-phosphate dehydratase AV939_12745 PF00117 Glutamine amidotransferase class-I AV939_12750 PF00977 Histidine biosynthesis protein AV939_12755 PF00977 Histidine biosynthesis protein AV939_12760 PF01502 Phosphoribosyl-AMP cyclohydrolase AV939_12760 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AV939_12770 PF00106 short chain dehydrogenase AV939_12780 PF00501 AMP-binding enzyme AV939_12790 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AV939_12800 PF00535 Glycosyl transferase family 2 AV939_12820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_12820 PF00512 His Kinase A (phospho-acceptor) domain AV939_12820 PF08521 Two-component sensor kinase N-terminal AV939_12825 PF00486 Transcriptional regulatory protein, C terminal AV939_12825 PF00072 Response regulator receiver domain AV939_12830 PF00753 Metallo-beta-lactamase superfamily AV939_12835 PF10502 Signal peptidase, peptidase S26 AV939_12840 PF00593 TonB dependent receptor AV939_12840 PF07715 TonB-dependent Receptor Plug Domain AV939_12850 PF05191 Adenylate kinase, active site lid AV939_12855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_12855 PF00183 Hsp90 protein AV939_12860 PF13662 Toprim domain AV939_12860 PF02132 RecR protein AV939_12880 PF02575 YbaB/EbfC DNA-binding family AV939_12885 PF12169 DNA polymerase III subunits gamma and tau domain III AV939_12885 PF12170 DNA polymerase III tau subunit V interacting with alpha AV939_12890 PF00156 Phosphoribosyl transferase domain AV939_12900 PF05114 Protein of unknown function (DUF692) AV939_12910 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AV939_12910 PF00400 WD domain, G-beta repeat AV939_12925 PF00360 Phytochrome region AV939_12925 PF00563 EAL domain AV939_12925 PF01590 GAF domain AV939_12925 PF00990 Diguanylate cyclase, GGDEF domain AV939_12960 PF01066 CDP-alcohol phosphatidyltransferase AV939_12980 PF07724 AAA domain (Cdc48 subfamily) AV939_12980 PF17871 AAA lid domain AV939_12980 PF02861 Clp amino terminal domain, pathogenicity island component AV939_12980 PF10431 C-terminal, D2-small domain, of ClpB protein AV939_12980 PF00004 ATPase family associated with various cellular activities (AAA) AV939_12990 PF01479 S4 domain AV939_12990 PF00849 RNA pseudouridylate synthase AV939_12995 PF13525 Outer membrane lipoprotein AV939_13005 PF04542 Sigma-70 region 2 AV939_13005 PF04545 Sigma-70, region 4 AV939_13020 PF00106 short chain dehydrogenase AV939_13040 PF00691 OmpA family AV939_13040 PF13677 Membrane MotB of proton-channel complex MotA/MotB AV939_13045 PF01618 MotA/TolQ/ExbB proton channel family AV939_13050 PF02609 Exonuclease VII small subunit AV939_13055 PF00348 Polyprenyl synthetase AV939_13060 PF02780 Transketolase, C-terminal domain AV939_13060 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AV939_13060 PF02779 Transketolase, pyrimidine binding domain AV939_13065 PF04608 Phosphatidylglycerophosphatase A AV939_13070 PF00586 AIR synthase related protein, N-terminal domain AV939_13070 PF02769 AIR synthase related protein, C-terminal domain AV939_13075 PF01029 NusB family AV939_13080 PF00885 6,7-dimethyl-8-ribityllumazine synthase AV939_13085 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AV939_13085 PF00925 GTP cyclohydrolase II AV939_13090 PF00677 Lumazine binding domain AV939_13095 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AV939_13095 PF01872 RibD C-terminal domain AV939_13100 PF03477 ATP cone domain AV939_13105 PF00464 Serine hydroxymethyltransferase AV939_13110 PF00132 Bacterial transferase hexapeptide (six repeats) AV939_13110 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AV939_13110 PF14602 Hexapeptide repeat of succinyl-transferase AV939_13115 PF12848 ABC transporter AV939_13115 PF00005 ABC transporter AV939_13125 PF18073 Rubredoxin metal binding domain AV939_13135 PF18429 Domain of unknown function (DUF5609) AV939_13145 PF01026 TatD related DNase AV939_13150 PF01243 Pyridoxamine 5'-phosphate oxidase AV939_13150 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AV939_13155 PF07650 KH domain AV939_13155 PF01926 50S ribosome-binding GTPase AV939_13160 PF14622 Ribonuclease-III-like AV939_13160 PF00035 Double-stranded RNA binding motif AV939_13165 PF10502 Signal peptidase, peptidase S26 AV939_13170 PF00009 Elongation factor Tu GTP binding domain AV939_13170 PF00679 Elongation factor G C-terminus AV939_13170 PF06421 GTP-binding protein LepA C-terminus AV939_13170 PF03144 Elongation factor Tu domain 2 AV939_13180 PF03888 MucB/RseB N-terminal domain AV939_13180 PF17188 MucB/RseB C-terminal domain AV939_13190 PF04542 Sigma-70 region 2 AV939_13190 PF08281 Sigma-70, region 4 AV939_13195 PF00890 FAD binding domain AV939_13195 PF02910 Fumarate reductase flavoprotein C-term AV939_13210 PF03937 Flavinator of succinate dehydrogenase AV939_13220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AV939_13225 PF00543 Nitrogen regulatory protein P-II AV939_13230 PF02540 NAD synthase AV939_13240 PF00114 Pilin (bacterial filament) AV939_13240 PF07963 Prokaryotic N-terminal methylation motif AV939_13290 PF02401 LytB protein AV939_13295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AV939_13300 PF01252 Signal peptidase (SPase) II AV939_13305 PF06827 Zinc finger found in FPG and IleRS AV939_13305 PF00133 tRNA synthetases class I (I, L, M and V) AV939_13305 PF08264 Anticodon-binding domain of tRNA AV939_13310 PF06574 FAD synthetase AV939_13310 PF01687 Riboflavin kinase AV939_13315 PF03023 Lipid II flippase MurJ AV939_13320 PF01649 Ribosomal protein S20 AV939_13325 PF00106 short chain dehydrogenase AV939_13340 PF01758 Sodium Bile acid symporter family AV939_13345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_13345 PF03466 LysR substrate binding domain AV939_13360 PF07687 Peptidase dimerisation domain AV939_13360 PF01546 Peptidase family M20/M25/M40 AV939_13370 PF00216 Bacterial DNA-binding protein AV939_13375 PF05362 Lon protease (S16) C-terminal proteolytic domain AV939_13375 PF00004 ATPase family associated with various cellular activities (AAA) AV939_13375 PF02190 ATP-dependent protease La (LON) substrate-binding domain AV939_13380 PF10431 C-terminal, D2-small domain, of ClpB protein AV939_13380 PF07724 AAA domain (Cdc48 subfamily) AV939_13380 PF06689 ClpX C4-type zinc finger AV939_13385 PF00574 Clp protease AV939_13390 PF05697 Bacterial trigger factor protein (TF) AV939_13390 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AV939_13390 PF05698 Bacterial trigger factor protein (TF) C-terminus AV939_13420 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AV939_13420 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AV939_13430 PF18389 TrmO C-terminal domain AV939_13430 PF01980 tRNA-methyltransferase O AV939_13435 PF03129 Anticodon binding domain AV939_13435 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AV939_13445 PF02253 Phospholipase A1 AV939_13450 PF00850 Histone deacetylase domain AV939_13455 PF02743 Cache domain AV939_13455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_13455 PF00672 HAMP domain AV939_13465 PF00958 GMP synthase C terminal domain AV939_13465 PF00117 Glutamine amidotransferase class-I AV939_13465 PF02540 NAD synthase AV939_13470 PF00478 IMP dehydrogenase / GMP reductase domain AV939_13470 PF00571 CBS domain AV939_13475 PF02601 Exonuclease VII, large subunit AV939_13475 PF13742 OB-fold nucleic acid binding domain AV939_13485 PF01926 50S ribosome-binding GTPase AV939_13485 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AV939_13490 PF13360 PQQ-like domain AV939_13495 PF09976 Tetratricopeptide repeat-like domain AV939_13500 PF03129 Anticodon binding domain AV939_13500 PF13393 Histidyl-tRNA synthetase AV939_13505 PF04551 GcpE protein AV939_13510 PF13464 Domain of unknown function (DUF4115) AV939_13520 PF04055 Radical SAM superfamily AV939_13525 PF00334 Nucleoside diphosphate kinase AV939_13530 PF02657 Fe-S metabolism associated domain AV939_13535 PF01883 Iron-sulfur cluster assembly protein AV939_13540 PF01521 Iron-sulphur cluster biosynthesis AV939_13545 PF00266 Aminotransferase class-V AV939_13550 PF01458 Uncharacterized protein family (UPF0051) AV939_13555 PF00005 ABC transporter AV939_13560 PF01458 Uncharacterized protein family (UPF0051) AV939_13565 PF00266 Aminotransferase class-V AV939_13570 PF02082 Transcriptional regulator AV939_13575 PF00132 Bacterial transferase hexapeptide (six repeats) AV939_13580 PF00588 SpoU rRNA Methylase family AV939_13585 PF00459 Inositol monophosphatase family AV939_13600 PF03707 Bacterial signalling protein N terminal repeat AV939_13600 PF00990 Diguanylate cyclase, GGDEF domain AV939_13600 PF00563 EAL domain AV939_13615 PF02355 Protein export membrane protein AV939_13615 PF07549 SecD/SecF GG Motif AV939_13620 PF07549 SecD/SecF GG Motif AV939_13620 PF02355 Protein export membrane protein AV939_13620 PF13721 SecD export protein N-terminal TM region AV939_13625 PF02699 Preprotein translocase subunit AV939_13630 PF01702 Queuine tRNA-ribosyltransferase AV939_13635 PF02547 Queuosine biosynthesis protein AV939_13645 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) AV939_13650 PF04012 PspA/IM30 family AV939_13675 PF03738 Glutathionylspermidine synthase preATP-grasp AV939_13690 PF04960 Glutaminase AV939_13695 PF00245 Alkaline phosphatase AV939_13700 PF00072 Response regulator receiver domain AV939_13705 PF00463 Isocitrate lyase family AV939_13710 PF03466 LysR substrate binding domain AV939_13710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_13715 PF01274 Malate synthase AV939_13725 PF01370 NAD dependent epimerase/dehydratase family AV939_13750 PF00899 ThiF family AV939_13755 PF00132 Bacterial transferase hexapeptide (six repeats) AV939_13760 PF03170 Bacterial cellulose synthase subunit AV939_13760 PF03552 Cellulose synthase AV939_13760 PF00535 Glycosyl transferase family 2 AV939_13760 PF07238 PilZ domain AV939_13775 PF13439 Glycosyltransferase Family 4 AV939_13775 PF00534 Glycosyl transferases group 1 AV939_13780 PF00534 Glycosyl transferases group 1 AV939_13780 PF13439 Glycosyltransferase Family 4 AV939_13825 PF00535 Glycosyl transferase family 2 AV939_13845 PF02397 Bacterial sugar transferase AV939_13860 PF13614 AAA domain AV939_13870 PF13401 AAA domain AV939_13870 PF01471 Putative peptidoglycan binding domain AV939_13875 PF00294 pfkB family carbohydrate kinase AV939_13875 PF01467 Cytidylyltransferase-like AV939_13880 PF01541 GIY-YIG catalytic domain AV939_13890 PF08335 GlnD PII-uridylyltransferase AV939_13890 PF03710 Glutamate-ammonia ligase adenylyltransferase AV939_13900 PF03279 Bacterial lipid A biosynthesis acyltransferase AV939_13930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AV939_13930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV939_13930 PF09317 Domain of unknown function (DUF1974) AV939_13930 PF02770 Acyl-CoA dehydrogenase, middle domain AV939_13940 PF00990 Diguanylate cyclase, GGDEF domain AV939_13940 PF03707 Bacterial signalling protein N terminal repeat AV939_13940 PF00563 EAL domain AV939_13945 PF00265 Thymidine kinase AV939_13955 PF00356 Bacterial regulatory proteins, lacI family AV939_14000 PF01926 50S ribosome-binding GTPase AV939_14005 PF08032 RNA 2'-O ribose methyltransferase substrate binding AV939_14005 PF00588 SpoU rRNA Methylase family AV939_14010 PF00037 4Fe-4S binding domain AV939_14010 PF11953 Domain of unknown function (DUF3470) AV939_14040 PF03793 PASTA domain AV939_14040 PF00069 Protein kinase domain AV939_14075 PF00593 TonB dependent receptor AV939_14075 PF07715 TonB-dependent Receptor Plug Domain AV939_14085 PF07715 TonB-dependent Receptor Plug Domain AV939_14085 PF07660 Secretin and TonB N terminus short domain AV939_14085 PF00593 TonB dependent receptor AV939_14105 PF07715 TonB-dependent Receptor Plug Domain AV939_14110 PF05360 yiaA/B two helix domain AV939_14125 PF05971 RNA methyltransferase AV939_14130 PF09278 MerR, DNA binding AV939_14130 PF00376 MerR family regulatory protein AV939_14145 PF08443 RimK-like ATP-grasp domain AV939_14145 PF18030 RimK PreATP-grasp domain AV939_14155 PF00246 Zinc carboxypeptidase AV939_14160 PF00483 Nucleotidyl transferase AV939_14200 PF02770 Acyl-CoA dehydrogenase, middle domain AV939_14200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AV939_14200 PF18158 Adaptive response protein AidB N-terminal domain AV939_14210 PF01244 Membrane dipeptidase (Peptidase family M19) AV939_14215 PF07660 Secretin and TonB N terminus short domain AV939_14215 PF07715 TonB-dependent Receptor Plug Domain AV939_14215 PF00593 TonB dependent receptor AV939_14225 PF01738 Dienelactone hydrolase family AV939_14230 PF00578 AhpC/TSA family AV939_14240 PF03969 AFG1-like ATPase AV939_14265 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AV939_14275 PF00881 Nitroreductase family AV939_14280 PF01295 Adenylate cyclase, class-I AV939_14280 PF12633 Adenylate cyclase NT domain AV939_14290 PF03061 Thioesterase superfamily AV939_14295 PF12392 Collagenase AV939_14295 PF01136 Peptidase family U32 AV939_14330 PF00128 Alpha amylase, catalytic domain AV939_14335 PF07690 Major Facilitator Superfamily AV939_14350 PF00266 Aminotransferase class-V AV939_14360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_14360 PF03466 LysR substrate binding domain AV939_14370 PF01593 Flavin containing amine oxidoreductase AV939_14380 PF01638 HxlR-like helix-turn-helix AV939_14385 PF03965 Penicillinase repressor AV939_14395 PF01258 Prokaryotic dksA/traR C4-type zinc finger AV939_14400 PF11838 ERAP1-like C-terminal domain AV939_14400 PF01433 Peptidase family M1 domain AV939_14440 PF06481 COX Aromatic Rich Motif AV939_14440 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AV939_14445 PF00115 Cytochrome C and Quinol oxidase polypeptide I AV939_14450 PF00510 Cytochrome c oxidase subunit III AV939_14455 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AV939_14460 PF01040 UbiA prenyltransferase family AV939_14475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_14475 PF03466 LysR substrate binding domain AV939_14485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_14485 PF03466 LysR substrate binding domain AV939_14490 PF00106 short chain dehydrogenase AV939_14495 PF01965 DJ-1/PfpI family AV939_14505 PF00743 Flavin-binding monooxygenase-like AV939_14510 PF00561 alpha/beta hydrolase fold AV939_14520 PF00873 AcrB/AcrD/AcrF family AV939_14540 PF01545 Cation efflux family AV939_14540 PF16916 Dimerisation domain of Zinc Transporter AV939_14550 PF01545 Cation efflux family AV939_14555 PF13411 MerR HTH family regulatory protein AV939_14580 PF00694 Aconitase C-terminal domain AV939_14585 PF00330 Aconitase family (aconitate hydratase) AV939_14590 PF00857 Isochorismatase family AV939_14595 PF02538 Hydantoinase B/oxoprolinase AV939_14600 PF01968 Hydantoinase/oxoprolinase AV939_14600 PF05378 Hydantoinase/oxoprolinase N-terminal region AV939_14605 PF00682 HMGL-like AV939_14610 PF02515 CoA-transferase family III AV939_14615 PF00593 TonB dependent receptor AV939_14615 PF07715 TonB-dependent Receptor Plug Domain AV939_14620 PF00158 Sigma-54 interaction domain AV939_14620 PF06506 Propionate catabolism activator AV939_14620 PF02954 Bacterial regulatory protein, Fis family AV939_14630 PF07715 TonB-dependent Receptor Plug Domain AV939_14630 PF00593 TonB dependent receptor AV939_14650 PF13533 Biotin-lipoyl like AV939_14655 PF01047 MarR family AV939_14660 PF17755 UvrA DNA-binding domain AV939_14665 PF03631 Virulence factor BrkB AV939_14675 PF09382 RQC domain AV939_14675 PF16124 RecQ zinc-binding AV939_14675 PF00570 HRDC domain AV939_14675 PF00271 Helicase conserved C-terminal domain AV939_14675 PF00270 DEAD/DEAH box helicase AV939_14680 PF07152 YaeQ protein AV939_14700 PF03466 LysR substrate binding domain AV939_14700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_14710 PF01556 DnaJ C terminal domain AV939_14710 PF00226 DnaJ domain AV939_14715 PF00175 Oxidoreductase NAD-binding domain AV939_14715 PF00970 Oxidoreductase FAD-binding domain AV939_14715 PF00042 Globin AV939_14730 PF00158 Sigma-54 interaction domain AV939_14730 PF01590 GAF domain AV939_14755 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AV939_14755 PF00400 WD domain, G-beta repeat AV939_14770 PF00392 Bacterial regulatory proteins, gntR family AV939_14770 PF00155 Aminotransferase class I and II AV939_14790 PF01863 Protein of unknown function DUF45 AV939_14805 PF01043 SecA preprotein cross-linking domain AV939_14805 PF02810 SEC-C motif AV939_14805 PF07517 SecA DEAD-like domain AV939_14805 PF07516 SecA Wing and Scaffold domain AV939_14840 PF07995 Glucose / Sorbosone dehydrogenase AV939_14845 PF12852 Cupin AV939_14845 PF12833 Helix-turn-helix domain AV939_14850 PF00892 EamA-like transporter family AV939_14855 PF06906 Protein of unknown function (DUF1272) AV939_14860 PF00270 DEAD/DEAH box helicase AV939_14860 PF00271 Helicase conserved C-terminal domain AV939_14910 PF07690 Major Facilitator Superfamily AV939_14920 PF00248 Aldo/keto reductase family AV939_14935 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AV939_14935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AV939_14975 PF13276 HTH-like domain AV939_14975 PF00665 Integrase core domain AV939_14975 PF13333 Integrase core domain AV939_15005 PF01597 Glycine cleavage H-protein AV939_15010 PF08669 Glycine cleavage T-protein C-terminal barrel domain AV939_15010 PF01571 Aminomethyltransferase folate-binding domain AV939_15015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_15015 PF03466 LysR substrate binding domain AV939_15025 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AV939_15025 PF00356 Bacterial regulatory proteins, lacI family AV939_15030 PF01306 LacY proton/sugar symporter AV939_15035 PF00251 Glycosyl hydrolases family 32 N-terminal domain AV939_15035 PF08244 Glycosyl hydrolases family 32 C terminal AV939_15040 PF00083 Sugar (and other) transporter AV939_15050 PF00593 TonB dependent receptor AV939_15050 PF07715 TonB-dependent Receptor Plug Domain AV939_15055 PF03150 Di-haem cytochrome c peroxidase AV939_15060 PF00557 Metallopeptidase family M24 AV939_15060 PF01321 Creatinase/Prolidase N-terminal domain AV939_15075 PF01494 FAD binding domain AV939_15080 PF01494 FAD binding domain AV939_15085 PF00557 Metallopeptidase family M24 AV939_15085 PF05195 Aminopeptidase P, N-terminal domain AV939_15090 PF03695 Uncharacterised protein family (UPF0149) AV939_15100 PF00294 pfkB family carbohydrate kinase AV939_15105 PF01156 Inosine-uridine preferring nucleoside hydrolase AV939_15110 PF00512 His Kinase A (phospho-acceptor) domain AV939_15110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_15110 PF00989 PAS fold AV939_15110 PF13188 PAS domain AV939_15115 PF01812 5-formyltetrahydrofolate cyclo-ligase family AV939_15120 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AV939_15125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AV939_15125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AV939_15125 PF01842 ACT domain AV939_15145 PF06945 Protein of unknown function (DUF1289) AV939_15165 PF00873 AcrB/AcrD/AcrF family AV939_15170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV939_15175 PF03466 LysR substrate binding domain AV939_15175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_15185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AV939_15185 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_15190 PF02817 e3 binding domain AV939_15190 PF00364 Biotin-requiring enzyme AV939_15190 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AV939_15195 PF17831 Pyruvate dehydrogenase E1 component middle domain AV939_15195 PF00456 Transketolase, thiamine diphosphate binding domain AV939_15200 PF00392 Bacterial regulatory proteins, gntR family AV939_15200 PF07729 FCD domain AV939_15210 PF01510 N-acetylmuramoyl-L-alanine amidase AV939_15220 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AV939_15220 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AV939_15225 PF07963 Prokaryotic N-terminal methylation motif AV939_15230 PF00482 Type II secretion system (T2SS), protein F AV939_15235 PF06750 Bacterial Peptidase A24 N-terminal domain AV939_15235 PF01478 Type IV leader peptidase family AV939_15240 PF01121 Dephospho-CoA kinase AV939_15245 PF07072 Cell division protein AV939_15255 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AV939_15260 PF00293 NUDIX domain AV939_15265 PF07517 SecA DEAD-like domain AV939_15265 PF01043 SecA preprotein cross-linking domain AV939_15265 PF02810 SEC-C motif AV939_15265 PF07516 SecA Wing and Scaffold domain AV939_15270 PF01551 Peptidase family M23 AV939_15270 PF01476 LysM domain AV939_15270 PF08525 Opacity-associated protein A N-terminal motif AV939_15275 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AV939_15280 PF00091 Tubulin/FtsZ family, GTPase domain AV939_15280 PF12327 FtsZ family, C-terminal domain AV939_15285 PF02491 SHS2 domain inserted in FTSA AV939_15290 PF03799 Cell division protein FtsQ AV939_15290 PF08478 POTRA domain, FtsQ-type AV939_15295 PF07478 D-ala D-ala ligase C-terminus AV939_15295 PF01820 D-ala D-ala ligase N-terminus AV939_15300 PF01225 Mur ligase family, catalytic domain AV939_15300 PF02875 Mur ligase family, glutamate ligase domain AV939_15300 PF08245 Mur ligase middle domain AV939_15305 PF04101 Glycosyltransferase family 28 C-terminal domain AV939_15305 PF03033 Glycosyltransferase family 28 N-terminal domain AV939_15310 PF01098 Cell cycle protein AV939_15315 PF08245 Mur ligase middle domain AV939_15315 PF02875 Mur ligase family, glutamate ligase domain AV939_15320 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AV939_15320 PF00953 Glycosyl transferase family 4 AV939_15325 PF08245 Mur ligase middle domain AV939_15325 PF02875 Mur ligase family, glutamate ligase domain AV939_15325 PF01225 Mur ligase family, catalytic domain AV939_15330 PF02875 Mur ligase family, glutamate ligase domain AV939_15330 PF08245 Mur ligase middle domain AV939_15330 PF01225 Mur ligase family, catalytic domain AV939_15335 PF00905 Penicillin binding protein transpeptidase domain AV939_15335 PF03717 Penicillin-binding Protein dimerisation domain AV939_15340 PF04999 Cell division protein FtsL AV939_15345 PF01795 MraW methylase family AV939_15350 PF02381 MraZ protein, putative antitoxin-like AV939_15360 PF01244 Membrane dipeptidase (Peptidase family M19) AV939_15365 PF00873 AcrB/AcrD/AcrF family AV939_15370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AV939_15390 PF00462 Glutaredoxin AV939_15390 PF08534 Redoxin AV939_15395 PF01590 GAF domain AV939_15395 PF00563 EAL domain AV939_15395 PF00360 Phytochrome region AV939_15395 PF00990 Diguanylate cyclase, GGDEF domain AV939_15405 PF00158 Sigma-54 interaction domain AV939_15405 PF00072 Response regulator receiver domain AV939_15405 PF02954 Bacterial regulatory protein, Fis family AV939_15410 PF01627 Hpt domain AV939_15410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_15410 PF00072 Response regulator receiver domain AV939_15410 PF00512 His Kinase A (phospho-acceptor) domain AV939_15410 PF18415 Histidine kinase receptor ArcB trans-membrane domain AV939_15410 PF00989 PAS fold AV939_15415 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AV939_15415 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AV939_15430 PF00924 Mechanosensitive ion channel AV939_15430 PF05552 Conserved TM helix AV939_15435 PF04452 RNA methyltransferase AV939_15440 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AV939_15440 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AV939_15445 PF02622 Uncharacterized ACR, COG1678 AV939_15450 PF03652 Holliday junction resolvase AV939_15460 PF00437 Type II/IV secretion system protein AV939_15465 PF00437 Type II/IV secretion system protein AV939_15470 PF01168 Alanine racemase, N-terminal domain AV939_15475 PF14748 Pyrroline-5-carboxylate reductase dimerisation AV939_15475 PF03807 NADP oxidoreductase coenzyme F420-dependent AV939_15480 PF02325 YGGT family AV939_15495 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AV939_15495 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_15505 PF08787 Alginate lyase AV939_15510 PF01588 Putative tRNA binding domain AV939_15515 PF00043 Glutathione S-transferase, C-terminal domain AV939_15515 PF02798 Glutathione S-transferase, N-terminal domain AV939_15520 PF03883 Peroxide stress protein YaaA AV939_15525 PF00923 Transaldolase/Fructose-6-phosphate aldolase AV939_15530 PF00342 Phosphoglucose isomerase AV939_15535 PF03167 Uracil DNA glycosylase superfamily AV939_15540 PF00291 Pyridoxal-phosphate dependent enzyme AV939_15540 PF14821 Threonine synthase N terminus AV939_15545 PF08544 GHMP kinases C terminal AV939_15545 PF00288 GHMP kinases N terminal domain AV939_15550 PF13840 ACT domain AV939_15550 PF00742 Homoserine dehydrogenase AV939_15550 PF01842 ACT domain AV939_15550 PF03447 Homoserine dehydrogenase, NAD binding domain AV939_15550 PF00696 Amino acid kinase family AV939_15555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_15555 PF03466 LysR substrate binding domain AV939_15560 PF08240 Alcohol dehydrogenase GroES-like domain AV939_15560 PF00107 Zinc-binding dehydrogenase AV939_15565 PF00196 Bacterial regulatory proteins, luxR family AV939_15565 PF00072 Response regulator receiver domain AV939_15570 PF07730 Histidine kinase AV939_15570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_15590 PF01022 Bacterial regulatory protein, arsR family AV939_15600 PF03358 NADPH-dependent FMN reductase AV939_15605 PF01758 Sodium Bile acid symporter family AV939_15610 PF00072 Response regulator receiver domain AV939_15615 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AV939_15620 PF00486 Transcriptional regulatory protein, C terminal AV939_15620 PF00072 Response regulator receiver domain AV939_15625 PF00512 His Kinase A (phospho-acceptor) domain AV939_15625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_15625 PF00989 PAS fold AV939_15625 PF16736 Single Cache-like AV939_15650 PF16653 Saccharopine dehydrogenase C-terminal domain AV939_15650 PF03435 Saccharopine dehydrogenase NADP binding domain AV939_15655 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AV939_15665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AV939_15670 PF04348 LppC putative lipoprotein AV939_15675 PF02021 Uncharacterised protein family UPF0102 AV939_15680 PF13580 SIS domain AV939_15685 PF04972 BON domain AV939_15690 PF07690 Major Facilitator Superfamily AV939_15725 PF00893 Small Multidrug Resistance protein AV939_15730 PF07730 Histidine kinase AV939_15735 PF00072 Response regulator receiver domain AV939_15735 PF00196 Bacterial regulatory proteins, luxR family AV939_15740 PF00593 TonB dependent receptor AV939_15740 PF07715 TonB-dependent Receptor Plug Domain AV939_15755 PF00285 Citrate synthase, C-terminal domain AV939_15760 PF00694 Aconitase C-terminal domain AV939_15760 PF00330 Aconitase family (aconitate hydratase) AV939_15765 PF04303 PrpF protein AV939_15770 PF00990 Diguanylate cyclase, GGDEF domain AV939_15780 PF05161 MOFRL family AV939_15780 PF13660 Domain of unknown function (DUF4147) AV939_15785 PF00474 Sodium:solute symporter family AV939_15790 PF00593 TonB dependent receptor AV939_15790 PF07715 TonB-dependent Receptor Plug Domain AV939_15815 PF00512 His Kinase A (phospho-acceptor) domain AV939_15815 PF18415 Histidine kinase receptor ArcB trans-membrane domain AV939_15815 PF01627 Hpt domain AV939_15815 PF00989 PAS fold AV939_15815 PF00072 Response regulator receiver domain AV939_15815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_15820 PF01493 GXGXG motif AV939_15820 PF00310 Glutamine amidotransferases class-II AV939_15820 PF01645 Conserved region in glutamate synthase AV939_15820 PF04898 Glutamate synthase central domain AV939_15825 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_15825 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AV939_15835 PF01381 Helix-turn-helix AV939_15840 PF00544 Pectate lyase AV939_15860 PF00544 Pectate lyase AV939_15875 PF01048 Phosphorylase superfamily AV939_15890 PF00581 Rhodanese-like domain AV939_15910 PF04225 Opacity-associated protein A LysM-like domain AV939_15910 PF01551 Peptidase family M23 AV939_15915 PF03702 Anhydro-N-acetylmuramic acid kinase AV939_15925 PF07690 Major Facilitator Superfamily AV939_15930 PF04966 Carbohydrate-selective porin, OprB family AV939_15935 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AV939_15945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AV939_15950 PF13417 Glutathione S-transferase, N-terminal domain AV939_15950 PF00043 Glutathione S-transferase, C-terminal domain AV939_15955 PF01521 Iron-sulphur cluster biosynthesis AV939_15960 PF03976 Polyphosphate kinase 2 (PPK2) AV939_15965 PF03776 Septum formation topological specificity factor MinE AV939_15970 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AV939_15975 PF05209 Septum formation inhibitor MinC, N-terminal domain AV939_15975 PF03775 Septum formation inhibitor MinC, C-terminal domain AV939_15980 PF00206 Lyase AV939_15980 PF10415 Fumarase C C-terminus AV939_16015 PF01566 Natural resistance-associated macrophage protein AV939_16020 PF00155 Aminotransferase class I and II AV939_16025 PF00512 His Kinase A (phospho-acceptor) domain AV939_16025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_16025 PF08448 PAS fold AV939_16025 PF00072 Response regulator receiver domain AV939_16025 PF13188 PAS domain AV939_16040 PF00120 Glutamine synthetase, catalytic domain AV939_16040 PF03951 Glutamine synthetase, beta-Grasp domain AV939_16050 PF00989 PAS fold AV939_16050 PF00512 His Kinase A (phospho-acceptor) domain AV939_16050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_16055 PF02954 Bacterial regulatory protein, Fis family AV939_16055 PF00072 Response regulator receiver domain AV939_16055 PF00158 Sigma-54 interaction domain AV939_16060 PF00072 Response regulator receiver domain AV939_16065 PF01553 Acyltransferase AV939_16070 PF06877 Regulator of ribonuclease activity B AV939_16080 PF17158 Membrane-associated sensor, integral membrane domain AV939_16080 PF00990 Diguanylate cyclase, GGDEF domain AV939_16090 PF01627 Hpt domain AV939_16090 PF00672 HAMP domain AV939_16090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_16090 PF00512 His Kinase A (phospho-acceptor) domain AV939_16090 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AV939_16090 PF00072 Response regulator receiver domain AV939_16095 PF00133 tRNA synthetases class I (I, L, M and V) AV939_16095 PF08264 Anticodon-binding domain of tRNA AV939_16095 PF10458 Valyl tRNA synthetase tRNA binding arm AV939_16100 PF04364 DNA polymerase III chi subunit, HolC AV939_16105 PF02789 Cytosol aminopeptidase family, N-terminal domain AV939_16105 PF00883 Cytosol aminopeptidase family, catalytic domain AV939_16110 PF03739 Lipopolysaccharide export system permease LptF/LptG AV939_16115 PF03739 Lipopolysaccharide export system permease LptF/LptG AV939_16125 PF04545 Sigma-70, region 4 AV939_16125 PF04542 Sigma-70 region 2 AV939_16160 PF06276 Ferric iron reductase FhuF-like transporter AV939_16160 PF04183 IucA / IucC family AV939_16165 PF06276 Ferric iron reductase FhuF-like transporter AV939_16165 PF04183 IucA / IucC family AV939_16170 PF00501 AMP-binding enzyme AV939_16170 PF13193 AMP-binding enzyme C-terminal domain AV939_16180 PF01261 Xylose isomerase-like TIM barrel AV939_16195 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AV939_16195 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AV939_16240 PF05736 OprF membrane domain AV939_16240 PF00691 OmpA family AV939_16260 PF00563 EAL domain AV939_16260 PF03707 Bacterial signalling protein N terminal repeat AV939_16260 PF00990 Diguanylate cyclase, GGDEF domain AV939_16265 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AV939_16265 PF05221 S-adenosyl-L-homocysteine hydrolase AV939_16320 PF00557 Metallopeptidase family M24 AV939_16320 PF01321 Creatinase/Prolidase N-terminal domain AV939_16325 PF00512 His Kinase A (phospho-acceptor) domain AV939_16325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_16335 PF13419 Haloacid dehalogenase-like hydrolase AV939_16340 PF08402 TOBE domain AV939_16340 PF00005 ABC transporter AV939_16345 PF00528 Binding-protein-dependent transport system inner membrane component AV939_16350 PF00528 Binding-protein-dependent transport system inner membrane component AV939_16365 PF00990 Diguanylate cyclase, GGDEF domain AV939_16365 PF05230 MASE2 domain AV939_16370 PF00990 Diguanylate cyclase, GGDEF domain AV939_16375 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AV939_16375 PF13360 PQQ-like domain AV939_16400 PF00005 ABC transporter AV939_16410 PF02789 Cytosol aminopeptidase family, N-terminal domain AV939_16410 PF00883 Cytosol aminopeptidase family, catalytic domain AV939_16415 PF12706 Beta-lactamase superfamily domain AV939_16420 PF03070 TENA/THI-4/PQQC family AV939_16425 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AV939_16430 PF13186 Iron-sulfur cluster-binding domain AV939_16430 PF04055 Radical SAM superfamily AV939_16455 PF00196 Bacterial regulatory proteins, luxR family AV939_16455 PF00072 Response regulator receiver domain AV939_16460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_16460 PF00512 His Kinase A (phospho-acceptor) domain AV939_16460 PF00072 Response regulator receiver domain AV939_16460 PF09456 RcsC Alpha-Beta-Loop (ABL) AV939_16470 PF12801 4Fe-4S binding domain AV939_16470 PF04205 FMN-binding domain AV939_16475 PF00171 Aldehyde dehydrogenase family AV939_16480 PF00072 Response regulator receiver domain AV939_16480 PF00196 Bacterial regulatory proteins, luxR family AV939_16485 PF07730 Histidine kinase AV939_16490 PF00561 alpha/beta hydrolase fold AV939_16495 PF00392 Bacterial regulatory proteins, gntR family AV939_16495 PF07729 FCD domain AV939_16500 PF08787 Alginate lyase AV939_16515 PF07715 TonB-dependent Receptor Plug Domain AV939_16520 PF03150 Di-haem cytochrome c peroxidase AV939_16535 PF08787 Alginate lyase AV939_16540 PF07690 Major Facilitator Superfamily AV939_16545 PF14592 Chondroitinase B AV939_16555 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AV939_16555 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AV939_16560 PF07883 Cupin domain AV939_16565 PF07690 Major Facilitator Superfamily AV939_16585 PF12773 Double zinc ribbon AV939_16585 PF00498 FHA domain AV939_16620 PF00805 Pentapeptide repeats (8 copies) AV939_16620 PF00069 Protein kinase domain AV939_16625 PF03413 Peptidase propeptide and YPEB domain AV939_16625 PF01447 Thermolysin metallopeptidase, catalytic domain AV939_16625 PF02868 Thermolysin metallopeptidase, alpha-helical domain AV939_16625 PF07504 Fungalysin/Thermolysin Propeptide Motif AV939_16630 PF01447 Thermolysin metallopeptidase, catalytic domain AV939_16630 PF02868 Thermolysin metallopeptidase, alpha-helical domain AV939_16630 PF16485 Protealysin propeptide AV939_16635 PF01061 ABC-2 type transporter AV939_16635 PF00498 FHA domain AV939_16635 PF00005 ABC transporter AV939_16640 PF00270 DEAD/DEAH box helicase AV939_16640 PF00271 Helicase conserved C-terminal domain AV939_16645 PF01081 KDPG and KHG aldolase AV939_16650 PF00294 pfkB family carbohydrate kinase AV939_16655 PF07729 FCD domain AV939_16655 PF00392 Bacterial regulatory proteins, gntR family AV939_16665 PF00924 Mechanosensitive ion channel AV939_16665 PF12795 Mechanosensitive ion channel porin domain AV939_16665 PF12794 Mechanosensitive ion channel inner membrane domain 1 AV939_16675 PF00141 Peroxidase AV939_16685 PF00999 Sodium/hydrogen exchanger family AV939_16685 PF02254 TrkA-N domain AV939_16700 PF03372 Endonuclease/Exonuclease/phosphatase family AV939_16705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_16705 PF03466 LysR substrate binding domain AV939_16715 PF01925 Sulfite exporter TauE/SafE AV939_16725 PF08769 Sporulation initiation factor Spo0A C terminal AV939_16725 PF00072 Response regulator receiver domain AV939_16735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_16735 PF00512 His Kinase A (phospho-acceptor) domain AV939_16745 PF00136 DNA polymerase family B AV939_16745 PF03104 DNA polymerase family B, exonuclease domain AV939_16790 PF05958 tRNA (Uracil-5-)-methyltransferase AV939_16795 PF00440 Bacterial regulatory proteins, tetR family AV939_16810 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AV939_16810 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_16820 PF03167 Uracil DNA glycosylase superfamily AV939_16825 PF00563 EAL domain AV939_16825 PF00990 Diguanylate cyclase, GGDEF domain AV939_16825 PF03707 Bacterial signalling protein N terminal repeat AV939_16835 PF01507 Phosphoadenosine phosphosulfate reductase family AV939_16840 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AV939_16840 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AV939_16845 PF00667 FAD binding domain AV939_16845 PF00258 Flavodoxin AV939_16845 PF00175 Oxidoreductase NAD-binding domain AV939_16850 PF07715 TonB-dependent Receptor Plug Domain AV939_16850 PF00593 TonB dependent receptor AV939_16875 PF04012 PspA/IM30 family AV939_16885 PF01207 Dihydrouridine synthase (Dus) AV939_16905 PF00563 EAL domain AV939_16905 PF03707 Bacterial signalling protein N terminal repeat AV939_16905 PF00990 Diguanylate cyclase, GGDEF domain AV939_16910 PF00756 Putative esterase AV939_16915 PF01553 Acyltransferase AV939_16920 PF01553 Acyltransferase AV939_16925 PF00924 Mechanosensitive ion channel AV939_16940 PF01370 NAD dependent epimerase/dehydratase family AV939_16945 PF00209 Sodium:neurotransmitter symporter family AV939_16960 PF01625 Peptide methionine sulfoxide reductase AV939_16975 PF00258 Flavodoxin AV939_16985 PF02472 Biopolymer transport protein ExbD/TolR AV939_16995 PF13181 Tetratricopeptide repeat AV939_16995 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AV939_17000 PF01270 Glycosyl hydrolases family 8 AV939_17010 PF07238 PilZ domain AV939_17010 PF03170 Bacterial cellulose synthase subunit AV939_17010 PF00535 Glycosyl transferase family 2 AV939_17025 PF05175 Methyltransferase small domain AV939_17030 PF13460 NAD(P)H-binding AV939_17035 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AV939_17035 PF00326 Prolyl oligopeptidase family AV939_17040 PF08000 Bacterial PH domain AV939_17045 PF08448 PAS fold AV939_17045 PF00563 EAL domain AV939_17045 PF00990 Diguanylate cyclase, GGDEF domain AV939_17050 PF00291 Pyridoxal-phosphate dependent enzyme AV939_17055 PF07969 Amidohydrolase family AV939_17060 PF00753 Metallo-beta-lactamase superfamily AV939_17070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_17070 PF03466 LysR substrate binding domain AV939_17075 PF13230 Glutamine amidotransferases class-II AV939_17090 PF01037 Lrp/AsnC ligand binding domain AV939_17105 PF16123 Hydroxyacylglutathione hydrolase C-terminus AV939_17105 PF00753 Metallo-beta-lactamase superfamily AV939_17115 PF00817 impB/mucB/samB family AV939_17115 PF11799 impB/mucB/samB family C-terminal domain AV939_17115 PF11798 IMS family HHH motif AV939_17125 PF02424 ApbE family AV939_17130 PF00175 Oxidoreductase NAD-binding domain AV939_17130 PF00111 2Fe-2S iron-sulfur cluster binding domain AV939_17130 PF00970 Oxidoreductase FAD-binding domain AV939_17135 PF02508 Rnf-Nqr subunit, membrane protein AV939_17140 PF02508 Rnf-Nqr subunit, membrane protein AV939_17145 PF04205 FMN-binding domain AV939_17150 PF03116 NQR2, RnfD, RnfE family AV939_17160 PF12241 Trans-2-enoyl-CoA reductase catalytic region AV939_17160 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AV939_17160 PF07055 Enoyl reductase FAD binding domain AV939_17165 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AV939_17165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AV939_17170 PF00311 Phosphoenolpyruvate carboxylase AV939_17175 PF00141 Peroxidase AV939_17180 PF00056 lactate/malate dehydrogenase, NAD binding domain AV939_17180 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AV939_17185 PF02863 Arginine repressor, C-terminal domain AV939_17185 PF01316 Arginine repressor, DNA binding domain AV939_17190 PF07715 TonB-dependent Receptor Plug Domain AV939_17190 PF00593 TonB dependent receptor AV939_17200 PF00593 TonB dependent receptor AV939_17215 PF00485 Phosphoribulokinase / Uridine kinase family AV939_17220 PF07662 Na+ dependent nucleoside transporter C-terminus AV939_17220 PF01773 Na+ dependent nucleoside transporter N-terminus AV939_17220 PF07670 Nucleoside recognition AV939_17235 PF02469 Fasciclin domain AV939_17245 PF00990 Diguanylate cyclase, GGDEF domain AV939_17245 PF00072 Response regulator receiver domain AV939_17255 PF00571 CBS domain AV939_17255 PF01380 SIS domain AV939_17260 PF00474 Sodium:solute symporter family AV939_17270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_17270 PF00512 His Kinase A (phospho-acceptor) domain AV939_17270 PF18415 Histidine kinase receptor ArcB trans-membrane domain AV939_17280 PF18030 RimK PreATP-grasp domain AV939_17280 PF08443 RimK-like ATP-grasp domain AV939_17290 PF08443 RimK-like ATP-grasp domain AV939_17290 PF18030 RimK PreATP-grasp domain AV939_17300 PF00072 Response regulator receiver domain AV939_17300 PF00196 Bacterial regulatory proteins, luxR family AV939_17305 PF16177 Acetyl-coenzyme A synthetase N-terminus AV939_17305 PF00501 AMP-binding enzyme AV939_17305 PF13193 AMP-binding enzyme C-terminal domain AV939_17315 PF02806 Alpha amylase, C-terminal all-beta domain AV939_17315 PF00128 Alpha amylase, catalytic domain AV939_17320 PF02690 Na+/Pi-cotransporter AV939_17325 PF00248 Aldo/keto reductase family AV939_17340 PF06628 Catalase-related immune-responsive AV939_17340 PF00199 Catalase AV939_17350 PF00009 Elongation factor Tu GTP binding domain AV939_17350 PF03143 Elongation factor Tu C-terminal domain AV939_17350 PF03144 Elongation factor Tu domain 2 AV939_17375 PF03309 Type III pantothenate kinase AV939_17380 PF02237 Biotin protein ligase C terminal domain AV939_17380 PF03099 Biotin/lipoate A/B protein ligase family AV939_17380 PF08279 HTH domain AV939_17385 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AV939_17385 PF01565 FAD binding domain AV939_17435 PF00664 ABC transporter transmembrane region AV939_17435 PF03412 Peptidase C39 family AV939_17435 PF00005 ABC transporter AV939_17440 PF03466 LysR substrate binding domain AV939_17440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_17450 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AV939_17450 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AV939_17450 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AV939_17455 PF00535 Glycosyl transferase family 2 AV939_17460 PF16363 GDP-mannose 4,6 dehydratase AV939_17465 PF04321 RmlD substrate binding domain AV939_17470 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AV939_17475 PF00483 Nucleotidyl transferase AV939_17485 PF00535 Glycosyl transferase family 2 AV939_17490 PF00535 Glycosyl transferase family 2 AV939_17500 PF00535 Glycosyl transferase family 2 AV939_17515 PF00132 Bacterial transferase hexapeptide (six repeats) AV939_17525 PF00535 Glycosyl transferase family 2 AV939_17540 PF00483 Nucleotidyl transferase AV939_17540 PF01050 Mannose-6-phosphate isomerase AV939_17545 PF01196 Ribosomal protein L17 AV939_17550 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AV939_17550 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AV939_17550 PF01000 RNA polymerase Rpb3/RpoA insert domain AV939_17555 PF01479 S4 domain AV939_17555 PF00163 Ribosomal protein S4/S9 N-terminal domain AV939_17560 PF00411 Ribosomal protein S11 AV939_17565 PF00416 Ribosomal protein S13/S18 AV939_17570 PF00344 SecY translocase AV939_17575 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AV939_17580 PF00327 Ribosomal protein L30p/L7e AV939_17585 PF00333 Ribosomal protein S5, N-terminal domain AV939_17585 PF03719 Ribosomal protein S5, C-terminal domain AV939_17590 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AV939_17595 PF00347 Ribosomal protein L6 AV939_17600 PF00410 Ribosomal protein S8 AV939_17605 PF00253 Ribosomal protein S14p/S29e AV939_17610 PF00673 ribosomal L5P family C-terminus AV939_17610 PF00281 Ribosomal protein L5 AV939_17615 PF00467 KOW motif AV939_17615 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AV939_17620 PF00238 Ribosomal protein L14p/L23e AV939_17625 PF00072 Response regulator receiver domain AV939_17625 PF09308 LuxQ, periplasmic AV939_17625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_17625 PF00512 His Kinase A (phospho-acceptor) domain AV939_17640 PF00588 SpoU rRNA Methylase family AV939_17640 PF08032 RNA 2'-O ribose methyltransferase substrate binding AV939_17645 PF00773 RNB domain AV939_17645 PF08206 Ribonuclease B OB domain AV939_17645 PF08461 Ribonuclease R winged-helix domain AV939_17645 PF17876 Cold shock domain AV939_17645 PF00575 S1 RNA binding domain AV939_17650 PF09423 PhoD-like phosphatase AV939_17650 PF16655 PhoD-like phosphatase, N-terminal domain AV939_17660 PF08238 Sel1 repeat AV939_17670 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AV939_17675 PF00970 Oxidoreductase FAD-binding domain AV939_17675 PF00175 Oxidoreductase NAD-binding domain AV939_17680 PF04389 Peptidase family M28 AV939_17700 PF01654 Cytochrome bd terminal oxidase subunit I AV939_17705 PF02322 Cytochrome bd terminal oxidase subunit II AV939_17710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_17710 PF00672 HAMP domain AV939_17710 PF12729 Four helix bundle sensory module for signal transduction AV939_17715 PF13404 AsnC-type helix-turn-helix domain AV939_17715 PF01037 Lrp/AsnC ligand binding domain AV939_17720 PF00291 Pyridoxal-phosphate dependent enzyme AV939_17730 PF00313 'Cold-shock' DNA-binding domain AV939_17735 PF03109 ABC1 family AV939_17745 PF01209 ubiE/COQ5 methyltransferase family AV939_17755 PF01432 Peptidase family M3 AV939_17760 PF00072 Response regulator receiver domain AV939_17770 PF00497 Bacterial extracellular solute-binding proteins, family 3 AV939_17770 PF00512 His Kinase A (phospho-acceptor) domain AV939_17770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_17775 PF00072 Response regulator receiver domain AV939_17775 PF02954 Bacterial regulatory protein, Fis family AV939_17775 PF00158 Sigma-54 interaction domain AV939_17780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AV939_17780 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_17785 PF10518 TAT (twin-arginine translocation) pathway signal sequence AV939_17785 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AV939_17785 PF01568 Molydopterin dinucleotide binding domain AV939_17785 PF00384 Molybdopterin oxidoreductase AV939_17790 PF14685 Tricorn protease PDZ domain AV939_17790 PF03572 Peptidase family S41 AV939_17790 PF14684 Tricorn protease C1 domain AV939_17790 PF07676 WD40-like Beta Propeller Repeat AV939_17805 PF03412 Peptidase C39 family AV939_17805 PF00005 ABC transporter AV939_17805 PF00664 ABC transporter transmembrane region AV939_17810 PF00072 Response regulator receiver domain AV939_17810 PF00196 Bacterial regulatory proteins, luxR family AV939_17825 PF00004 ATPase family associated with various cellular activities (AAA) AV939_17825 PF07724 AAA domain (Cdc48 subfamily) AV939_17830 PF00227 Proteasome subunit AV939_17835 PF05036 Sporulation related domain AV939_17840 PF18074 Primosomal protein N C-terminal domain AV939_17840 PF17764 3′ DNA-binding domain (3′BD) AV939_17840 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AV939_17840 PF00270 DEAD/DEAH box helicase AV939_17840 PF00271 Helicase conserved C-terminal domain AV939_17845 PF01197 Ribosomal protein L31 AV939_17855 PF00390 Malic enzyme, N-terminal domain AV939_17855 PF03949 Malic enzyme, NAD binding domain AV939_17860 PF01340 Met Apo-repressor, MetJ AV939_17865 PF02219 Methylenetetrahydrofolate reductase AV939_17870 PF03631 Virulence factor BrkB AV939_17885 PF00561 alpha/beta hydrolase fold AV939_17890 PF02580 D-Tyr-tRNA(Tyr) deacylase AV939_17895 PF09500 Putative thioesterase (yiiD_Cterm) AV939_17895 PF00583 Acetyltransferase (GNAT) family AV939_17900 PF04545 Sigma-70, region 4 AV939_17900 PF04542 Sigma-70 region 2 AV939_17900 PF00140 Sigma-70 factor, region 1.2 AV939_17905 PF08668 HDOD domain AV939_17905 PF00563 EAL domain AV939_17910 PF00563 EAL domain AV939_17910 PF08668 HDOD domain AV939_17915 PF18075 FtsX extracellular domain AV939_17920 PF00005 ABC transporter AV939_17925 PF02881 SRP54-type protein, helical bundle domain AV939_17925 PF00448 SRP54-type protein, GTPase domain AV939_17940 PF01914 MarC family integral membrane protein AV939_17950 PF00883 Cytosol aminopeptidase family, catalytic domain AV939_17950 PF12404 Peptidase AV939_17955 PF17746 SfsA N-terminal OB domain AV939_17955 PF03749 Sugar fermentation stimulation protein RE domain AV939_17960 PF01258 Prokaryotic dksA/traR C4-type zinc finger AV939_17965 PF00749 tRNA synthetases class I (E and Q), catalytic domain AV939_17970 PF12626 Polymerase A arginine-rich C-terminus AV939_17970 PF01743 Poly A polymerase head domain AV939_17970 PF12627 Probable RNA and SrmB- binding site of polymerase A AV939_17975 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AV939_17980 PF02548 Ketopantoate hydroxymethyltransferase AV939_17985 PF02569 Pantoate-beta-alanine ligase AV939_17990 PF00282 Pyridoxal-dependent decarboxylase conserved domain AV939_17995 PF00563 EAL domain AV939_17995 PF12792 CSS motif domain associated with EAL AV939_18005 PF01061 ABC-2 type transporter AV939_18010 PF00005 ABC transporter AV939_18015 PF00072 Response regulator receiver domain AV939_18015 PF00486 Transcriptional regulatory protein, C terminal AV939_18020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_18020 PF00512 His Kinase A (phospho-acceptor) domain AV939_18020 PF00672 HAMP domain AV939_18025 PF00593 TonB dependent receptor AV939_18025 PF07715 TonB-dependent Receptor Plug Domain AV939_18030 PF13640 2OG-Fe(II) oxygenase superfamily AV939_18030 PF18331 PKHD-type hydroxylase C-terminal domain AV939_18045 PF01595 Cyclin M transmembrane N-terminal domain AV939_18045 PF00571 CBS domain AV939_18050 PF03773 Predicted permease AV939_18055 PF02554 Carbon starvation protein CstA AV939_18055 PF13722 5TM C-terminal transporter carbon starvation CstA AV939_18065 PF00474 Sodium:solute symporter family AV939_18080 PF00258 Flavodoxin AV939_18080 PF00667 FAD binding domain AV939_18080 PF00175 Oxidoreductase NAD-binding domain AV939_18105 PF03143 Elongation factor Tu C-terminal domain AV939_18105 PF03144 Elongation factor Tu domain 2 AV939_18105 PF00009 Elongation factor Tu GTP binding domain AV939_18110 PF00009 Elongation factor Tu GTP binding domain AV939_18110 PF03764 Elongation factor G, domain IV AV939_18110 PF14492 Elongation Factor G, domain II AV939_18110 PF00679 Elongation factor G C-terminus AV939_18110 PF03144 Elongation factor Tu domain 2 AV939_18115 PF00177 Ribosomal protein S7p/S5e AV939_18120 PF00164 Ribosomal protein S12/S23 AV939_18125 PF04998 RNA polymerase Rpb1, domain 5 AV939_18125 PF05000 RNA polymerase Rpb1, domain 4 AV939_18125 PF04983 RNA polymerase Rpb1, domain 3 AV939_18125 PF00623 RNA polymerase Rpb1, domain 2 AV939_18125 PF04997 RNA polymerase Rpb1, domain 1 AV939_18130 PF04560 RNA polymerase Rpb2, domain 7 AV939_18130 PF04561 RNA polymerase Rpb2, domain 2 AV939_18130 PF00562 RNA polymerase Rpb2, domain 6 AV939_18130 PF10385 RNA polymerase beta subunit external 1 domain AV939_18130 PF04563 RNA polymerase beta subunit AV939_18130 PF04565 RNA polymerase Rpb2, domain 3 AV939_18135 PF16320 Ribosomal protein L7/L12 dimerisation domain AV939_18135 PF00542 Ribosomal protein L7/L12 C-terminal domain AV939_18140 PF00466 Ribosomal protein L10 AV939_18145 PF00687 Ribosomal protein L1p/L10e family AV939_18150 PF03946 Ribosomal protein L11, N-terminal domain AV939_18150 PF00298 Ribosomal protein L11, RNA binding domain AV939_18155 PF02357 Transcription termination factor nusG AV939_18155 PF00467 KOW motif AV939_18160 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AV939_18170 PF00664 ABC transporter transmembrane region AV939_18170 PF00005 ABC transporter AV939_18175 PF03737 Aldolase/RraA AV939_18180 PF01431 Peptidase family M13 AV939_18180 PF05649 Peptidase family M13 AV939_18190 PF00271 Helicase conserved C-terminal domain AV939_18190 PF03880 DbpA RNA binding domain AV939_18190 PF00270 DEAD/DEAH box helicase AV939_18195 PF01979 Amidohydrolase family AV939_18205 PF08212 Lipocalin-like domain AV939_18210 PF00248 Aldo/keto reductase family AV939_18215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AV939_18220 PF00128 Alpha amylase, catalytic domain AV939_18230 PF01227 GTP cyclohydrolase I AV939_18235 PF05643 Putative bacterial lipoprotein (DUF799) AV939_18245 PF03783 Curli production assembly/transport component CsgG AV939_18250 PF04371 Porphyromonas-type peptidyl-arginine deiminase AV939_18255 PF00795 Carbon-nitrogen hydrolase AV939_18270 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) AV939_18275 PF00270 DEAD/DEAH box helicase AV939_18275 PF00271 Helicase conserved C-terminal domain AV939_18275 PF08494 DEAD/H associated AV939_18285 PF04679 ATP dependent DNA ligase C terminal region AV939_18285 PF01068 ATP dependent DNA ligase domain AV939_18285 PF04675 DNA ligase N terminus AV939_18295 PF00294 pfkB family carbohydrate kinase AV939_18300 PF00480 ROK family AV939_18310 PF00043 Glutathione S-transferase, C-terminal domain AV939_18310 PF02798 Glutathione S-transferase, N-terminal domain AV939_18325 PF00561 alpha/beta hydrolase fold AV939_18340 PF00171 Aldehyde dehydrogenase family AV939_18345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AV939_18345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AV939_18345 PF00205 Thiamine pyrophosphate enzyme, central domain AV939_18355 PF00762 Ferrochelatase AV939_18360 PF03806 AbgT putative transporter family AV939_18365 PF01145 SPFH domain / Band 7 family AV939_18370 PF01145 SPFH domain / Band 7 family AV939_18370 PF12221 Bacterial membrane protein N terminal AV939_18375 PF01926 50S ribosome-binding GTPase AV939_18375 PF13167 GTP-binding GTPase N-terminal AV939_18375 PF16360 GTP-binding GTPase Middle Region AV939_18380 PF17209 Hfq protein AV939_18390 PF01119 DNA mismatch repair protein, C-terminal domain AV939_18390 PF08676 MutL C terminal dimerisation domain AV939_18395 PF01520 N-acetylmuramoyl-L-alanine amidase AV939_18400 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AV939_18405 PF01256 Carbohydrate kinase AV939_18405 PF03853 YjeF-related protein N-terminus AV939_18410 PF08331 Domain of unknown function (DUF1730) AV939_18420 PF01208 Uroporphyrinogen decarboxylase (URO-D) AV939_18425 PF09297 NADH pyrophosphatase zinc ribbon domain AV939_18425 PF00293 NUDIX domain AV939_18430 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AV939_18435 PF01475 Ferric uptake regulator family AV939_18445 PF01894 Uncharacterised protein family UPF0047 AV939_18450 PF05736 OprF membrane domain AV939_18450 PF00691 OmpA family AV939_18455 PF00772 DnaB-like helicase N terminal domain AV939_18455 PF03796 DnaB-like helicase C terminal domain AV939_18480 PF03473 MOSC domain AV939_18480 PF03475 3-alpha domain AV939_18490 PF00873 AcrB/AcrD/AcrF family AV939_18495 PF01281 Ribosomal protein L9, N-terminal domain AV939_18495 PF03948 Ribosomal protein L9, C-terminal domain AV939_18500 PF01084 Ribosomal protein S18 AV939_18505 PF01250 Ribosomal protein S6 AV939_18510 PF00672 HAMP domain AV939_18510 PF18698 Histidine kinase sensor domain AV939_18510 PF00989 PAS fold AV939_18510 PF00512 His Kinase A (phospho-acceptor) domain AV939_18510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_18520 PF08447 PAS fold AV939_18520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_18525 PF00512 His Kinase A (phospho-acceptor) domain AV939_18525 PF00497 Bacterial extracellular solute-binding proteins, family 3 AV939_18525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_18530 PF00672 HAMP domain AV939_18530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AV939_18530 PF17200 Single Cache domain 2 AV939_18535 PF00356 Bacterial regulatory proteins, lacI family AV939_18545 PF00232 Glycosyl hydrolase family 1 AV939_18555 PF00005 ABC transporter AV939_18560 PF01032 FecCD transport family AV939_18565 PF01497 Periplasmic binding protein AV939_18575 PF00593 TonB dependent receptor AV939_18575 PF07715 TonB-dependent Receptor Plug Domain AV939_18580 PF07690 Major Facilitator Superfamily AV939_18585 PF01915 Glycosyl hydrolase family 3 C-terminal domain AV939_18585 PF00933 Glycosyl hydrolase family 3 N terminal domain AV939_18585 PF14310 Fibronectin type III-like domain AV939_18600 PF03601 Conserved hypothetical protein 698 AV939_18605 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AV939_18610 PF00248 Aldo/keto reductase family AV939_18630 PF00474 Sodium:solute symporter family AV939_18635 PF01545 Cation efflux family AV939_18655 PF00722 Glycosyl hydrolases family 16 AV939_18670 PF07715 TonB-dependent Receptor Plug Domain AV939_18670 PF00593 TonB dependent receptor AV939_18675 PF00005 ABC transporter AV939_18675 PF00664 ABC transporter transmembrane region AV939_18680 PF00005 ABC transporter AV939_18680 PF00664 ABC transporter transmembrane region AV939_18690 PF02322 Cytochrome bd terminal oxidase subunit II AV939_18695 PF01654 Cytochrome bd terminal oxidase subunit I AV939_18705 PF02954 Bacterial regulatory protein, Fis family AV939_18705 PF00072 Response regulator receiver domain AV939_18705 PF00158 Sigma-54 interaction domain AV939_18740 PF01132 Elongation factor P (EF-P) OB domain AV939_18740 PF08207 Elongation factor P (EF-P) KOW-like domain AV939_18740 PF09285 Elongation factor P, C-terminal AV939_18765 PF13474 SnoaL-like domain AV939_18805 PF05532 CsbD-like AV939_18820 PF04542 Sigma-70 region 2 AV939_18820 PF08281 Sigma-70, region 4 AV939_18825 PF00082 Subtilase family AV939_18845 PF00472 RF-1 domain AV939_18850 PF08386 TAP-like protein AV939_18850 PF00561 alpha/beta hydrolase fold AV939_18875 PF01292 Prokaryotic cytochrome b561 AV939_18880 PF04264 YceI-like domain AV939_18885 PF07992 Pyridine nucleotide-disulphide oxidoreductase AV939_18890 PF07715 TonB-dependent Receptor Plug Domain AV939_18890 PF00593 TonB dependent receptor AV939_18900 PF01048 Phosphorylase superfamily AV939_18905 PF03466 LysR substrate binding domain AV939_18905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_18910 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AV939_18915 PF16884 N-terminal domain of oxidoreductase AV939_18915 PF00107 Zinc-binding dehydrogenase AV939_18920 PF00360 Phytochrome region AV939_18920 PF00563 EAL domain AV939_18920 PF00990 Diguanylate cyclase, GGDEF domain AV939_18920 PF01590 GAF domain AV939_18925 PF00072 Response regulator receiver domain AV939_18925 PF09308 LuxQ, periplasmic AV939_18925 PF00512 His Kinase A (phospho-acceptor) domain AV939_18925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_18940 PF00296 Luciferase-like monooxygenase AV939_18950 PF00005 ABC transporter AV939_18970 PF07683 Cobalamin synthesis protein cobW C-terminal domain AV939_18970 PF02492 CobW/HypB/UreG, nucleotide-binding domain AV939_18985 PF00593 TonB dependent receptor AV939_18985 PF07715 TonB-dependent Receptor Plug Domain AV939_18990 PF01258 Prokaryotic dksA/traR C4-type zinc finger AV939_19015 PF01380 SIS domain AV939_19020 PF00455 DeoR C terminal sensor domain AV939_19020 PF08220 DeoR-like helix-turn-helix domain AV939_19025 PF00132 Bacterial transferase hexapeptide (six repeats) AV939_19025 PF14602 Hexapeptide repeat of succinyl-transferase AV939_19025 PF12804 MobA-like NTP transferase domain AV939_19035 PF00892 EamA-like transporter family AV939_19040 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AV939_19040 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AV939_19045 PF01965 DJ-1/PfpI family AV939_19045 PF12833 Helix-turn-helix domain AV939_19050 PF00144 Beta-lactamase AV939_19055 PF17810 Arginine decarboxylase helical bundle domain AV939_19055 PF17944 Arginine decarboxylase C-terminal helical extension AV939_19055 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AV939_19065 PF02233 NAD(P) transhydrogenase beta subunit AV939_19070 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AV939_19075 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AV939_19075 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AV939_19095 PF07683 Cobalamin synthesis protein cobW C-terminal domain AV939_19095 PF02492 CobW/HypB/UreG, nucleotide-binding domain AV939_19105 PF00563 EAL domain AV939_19105 PF00990 Diguanylate cyclase, GGDEF domain AV939_19105 PF03707 Bacterial signalling protein N terminal repeat AV939_19110 PF00118 TCP-1/cpn60 chaperonin family AV939_19115 PF00166 Chaperonin 10 Kd subunit AV939_19125 PF02683 Cytochrome C biogenesis protein transmembrane region AV939_19125 PF11412 Disulphide bond corrector protein DsbC AV939_19130 PF01551 Peptidase family M23 AV939_19135 PF01220 Dehydroquinase class II AV939_19140 PF00364 Biotin-requiring enzyme AV939_19145 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AV939_19145 PF00289 Biotin carboxylase, N-terminal domain AV939_19145 PF02785 Biotin carboxylase C-terminal domain AV939_19165 PF11490 DNA polymerase III polC-type N-terminus II AV939_19165 PF07733 Bacterial DNA polymerase III alpha NTPase domain AV939_19165 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AV939_19165 PF14579 Helix-hairpin-helix motif AV939_19165 PF02811 PHP domain AV939_19165 PF00929 Exonuclease AV939_19180 PF01355 High potential iron-sulfur protein AV939_19185 PF01425 Amidase AV939_19200 PF01207 Dihydrouridine synthase (Dus) AV939_19205 PF02954 Bacterial regulatory protein, Fis family AV939_19210 PF02142 MGS-like domain AV939_19210 PF01808 AICARFT/IMPCHase bienzyme AV939_19220 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AV939_19220 PF02844 Phosphoribosylglycinamide synthetase, N domain AV939_19220 PF02843 Phosphoribosylglycinamide synthetase, C domain AV939_19230 PF00027 Cyclic nucleotide-binding domain AV939_19230 PF00520 Ion transport protein AV939_19240 PF00485 Phosphoribulokinase / Uridine kinase family AV939_19245 PF00860 Permease family AV939_19250 PF07660 Secretin and TonB N terminus short domain AV939_19250 PF00593 TonB dependent receptor AV939_19250 PF07715 TonB-dependent Receptor Plug Domain AV939_19260 PF00072 Response regulator receiver domain AV939_19260 PF00486 Transcriptional regulatory protein, C terminal AV939_19265 PF00672 HAMP domain AV939_19265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AV939_19265 PF00512 His Kinase A (phospho-acceptor) domain AV939_19280 PF01430 Hsp33 protein AV939_19285 PF01479 S4 domain AV939_19290 PF11356 Type II secretion system protein C AV939_19295 PF00263 Bacterial type II and III secretion system protein AV939_19295 PF03958 Bacterial type II/III secretion system short domain AV939_19300 PF00437 Type II/IV secretion system protein AV939_19305 PF00482 Type II secretion system (T2SS), protein F AV939_19310 PF07963 Prokaryotic N-terminal methylation motif AV939_19310 PF08334 Type II secretion system (T2SS), protein G AV939_19315 PF12019 Type II transport protein GspH AV939_19315 PF07963 Prokaryotic N-terminal methylation motif AV939_19320 PF02501 Type II secretion system (T2SS), protein I AV939_19320 PF07963 Prokaryotic N-terminal methylation motif AV939_19325 PF11612 Type II secretion system (T2SS), protein J AV939_19325 PF07963 Prokaryotic N-terminal methylation motif AV939_19330 PF03934 Type II secretion system (T2SS), protein K AV939_19335 PF05134 Type II secretion system (T2SS), protein L AV939_19335 PF12693 GspL periplasmic domain AV939_19340 PF04612 Type II secretion system (T2SS), protein M AV939_19350 PF12706 Beta-lactamase superfamily domain AV939_19355 PF00171 Aldehyde dehydrogenase family AV939_19360 PF01931 Protein of unknown function DUF84 AV939_19365 PF13419 Haloacid dehalogenase-like hydrolase AV939_19370 PF00293 NUDIX domain AV939_19375 PF00459 Inositol monophosphatase family AV939_19390 PF04349 Periplasmic glucan biosynthesis protein, MdoG AV939_19400 PF06794 Uncharacterised protein family (UPF0270) AV939_19405 PF00561 alpha/beta hydrolase fold AV939_19415 PF00005 ABC transporter AV939_19415 PF12848 ABC transporter AV939_19430 PF04102 SlyX AV939_19440 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AV939_19440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AV939_19450 PF01272 Transcription elongation factor, GreA/GreB, C-term AV939_19450 PF03449 Transcription elongation factor, N-terminal AV939_19455 PF16921 Tex protein YqgF-like domain AV939_19455 PF17674 HHH domain AV939_19455 PF09371 Tex-like protein N-terminal domain AV939_19455 PF00575 S1 RNA binding domain AV939_19470 PF00561 alpha/beta hydrolase fold AV939_19475 PF00156 Phosphoribosyl transferase domain AV939_19485 PF01521 Iron-sulphur cluster biosynthesis AV939_19485 PF01106 NifU-like domain AV939_19495 PF01177 Asp/Glu/Hydantoin racemase AV939_19510 PF06445 GyrI-like small molecule binding domain AV939_19515 PF01554 MatE AV939_19530 PF02630 SCO1/SenC AV939_19535 PF01040 UbiA prenyltransferase family AV939_19540 PF02628 Cytochrome oxidase assembly protein AV939_19560 PF00510 Cytochrome c oxidase subunit III AV939_19565 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AV939_19570 PF00115 Cytochrome C and Quinol oxidase polypeptide I AV939_19575 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AV939_19575 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AV939_19580 PF00717 Peptidase S24-like AV939_19580 PF01726 LexA DNA binding domain AV939_19585 PF00593 TonB dependent receptor AV939_19585 PF07715 TonB-dependent Receptor Plug Domain AV939_19595 PF01553 Acyltransferase AV939_19600 PF00291 Pyridoxal-phosphate dependent enzyme AV939_19600 PF00585 C-terminal regulatory domain of Threonine dehydratase AV939_19605 PF00920 Dehydratase family AV939_19610 PF01063 Amino-transferase class IV AV939_19615 PF03458 UPF0126 domain AV939_19620 PF13335 Magnesium chelatase, subunit ChlI C-terminal AV939_19620 PF01078 Magnesium chelatase, subunit ChlI AV939_19625 PF03466 LysR substrate binding domain AV939_19625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AV939_19630 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AV939_19630 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AV939_19635 PF07690 Major Facilitator Superfamily AV939_19645 PF01103 Surface antigen AV939_19645 PF17243 POTRA domain TamA domain 1 AV939_19645 PF07244 Surface antigen variable number repeat AV939_19650 PF04357 TamB, inner membrane protein subunit of TAM complex AV939_19675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AV939_19675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AV939_19685 PF01472 PUA domain AV939_19685 PF00696 Amino acid kinase family AV939_19705 PF03109 ABC1 family AV939_19715 PF04116 Fatty acid hydroxylase superfamily AV939_19730 PF01979 Amidohydrolase family AV939_19750 PF06724 Domain of Unknown Function (DUF1206) AV939_19755 PF01206 Sulfurtransferase TusA AV939_19760 PF00156 Phosphoribosyl transferase domain AV939_19765 PF03725 3' exoribonuclease family, domain 2 AV939_19765 PF01138 3' exoribonuclease family, domain 1 AV939_19770 PF03755 YicC-like family, N-terminal region AV939_19770 PF08340 Domain of unknown function (DUF1732) AV939_19785 PF04820 Tryptophan halogenase AV939_19800 PF00232 Glycosyl hydrolase family 1 AV939_19810 PF00356 Bacterial regulatory proteins, lacI family AV939_19820 PF05736 OprF membrane domain AV939_19820 PF00691 OmpA family AV939_19825 PF01966 HD domain AV939_19840 PF02798 Glutathione S-transferase, N-terminal domain AV939_19840 PF00043 Glutathione S-transferase, C-terminal domain AV939_19855 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AV939_19855 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AV939_19860 PF02874 ATP synthase alpha/beta family, beta-barrel domain AV939_19860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AV939_19865 PF00231 ATP synthase AV939_19870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AV939_19870 PF00306 ATP synthase alpha/beta chain, C terminal domain AV939_19870 PF02874 ATP synthase alpha/beta family, beta-barrel domain AV939_19875 PF00213 ATP synthase delta (OSCP) subunit AV939_19880 PF00430 ATP synthase B/B' CF(0) AV939_19885 PF00137 ATP synthase subunit C AV939_19890 PF00119 ATP synthase A chain AV939_19900 PF02195 ParB-like nuclease domain AV939_19900 PF17762 HTH domain found in ParB protein AV939_19905 PF13614 AAA domain AV939_19910 PF02527 rRNA small subunit methyltransferase G AV939_19915 PF13932 GidA associated domain AV939_19915 PF01134 Glucose inhibited division protein A AV939_19930 PF00258 Flavodoxin AV939_19935 PF01926 50S ribosome-binding GTPase AV939_19935 PF10396 GTP-binding protein TrmE N-terminus AV939_19935 PF12631 MnmE helical domain AV939_19940 PF04461 Protein of unknown function (DUF520) AV939_19945 PF14849 YidC periplasmic domain AV939_19945 PF02096 60Kd inner membrane protein AV939_19950 PF00825 Ribonuclease P AV939_19955 PF00468 Ribosomal protein L34