AV939_00005 SM00382 ATPases associated with a variety of cellular activities AV939_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AV939_00010 SM00480 DNA polymerase III beta subunit AV939_00020 SM00387 Histidine kinase-like ATPases AV939_00020 SM00433 TopoisomeraseII AV939_00035 SM00836 DALR anticodon binding domain AV939_00070 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AV939_00070 SM00474 3'-5' exonuclease AV939_00070 SM00475 5'-3' exonuclease AV939_00070 SM00482 DNA polymerase A domain AV939_00105 SM00257 Lysin motif AV939_00195 SM00481 DNA polymerase alpha chain like domain AV939_00295 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AV939_00295 SM01232 AV939_00295 AV939_00325 SM00052 Putative diguanylate phosphodiesterase AV939_00325 SM00267 diguanylate cyclase AV939_00335 SM00829 Enoylreductase AV939_00340 SM00450 Rhodanese Homology Domain AV939_00375 SM00052 Putative diguanylate phosphodiesterase AV939_00375 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV939_00375 SM00267 diguanylate cyclase AV939_00490 SM00989 AV939_00490 AV939_00500 SM00342 helix_turn_helix, arabinose operon control protein AV939_00575 SM00346 helix_turn_helix isocitrate lyase regulation AV939_00585 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AV939_00605 SM00028 Tetratricopeptide repeats AV939_00610 SM00387 Histidine kinase-like ATPases AV939_00610 SM00388 His Kinase A (phosphoacceptor) domain AV939_00610 SM00448 cheY-homologous receiver domain AV939_00640 SM00382 ATPases associated with a variety of cellular activities AV939_00665 SM00849 Metallo-beta-lactamase superfamily AV939_00695 SM00876 Biotin and Thiamin Synthesis associated domain AV939_00760 SM00729 Elongator protein 3, MiaB family, Radical SAM AV939_00820 SM00267 diguanylate cyclase AV939_00830 SM00072 Guanylate kinase homologues. AV939_00835 SM01409 AV939_00835 AV939_00840 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV939_00840 SM00954 Region found in RelA / SpoT proteins AV939_00855 SM00487 DEAD-like helicases superfamily AV939_00855 SM00490 helicase superfamily c-terminal domain AV939_00890 SM00382 ATPases associated with a variety of cellular activities AV939_00925 SM00028 Tetratricopeptide repeats AV939_00925 SM00267 diguanylate cyclase AV939_00955 SM00271 DnaJ molecular chaperone homology domain AV939_00990 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_01010 SM00052 Putative diguanylate phosphodiesterase AV939_01010 SM00267 diguanylate cyclase AV939_01030 SM00341 Helicase and RNase D C-terminal AV939_01030 SM00487 DEAD-like helicases superfamily AV939_01030 SM00490 helicase superfamily c-terminal domain AV939_01030 SM00956 AV939_01030 AV939_01040 SM00924 MgtE intracellular N domain AV939_01050 SM00267 diguanylate cyclase AV939_01050 SM00448 cheY-homologous receiver domain AV939_01060 SM00971 Serine acetyltransferase, N-terminal AV939_01100 SM00014 Acid phosphatase homologues AV939_01140 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV939_01175 SM00354 helix_turn _helix lactose operon repressor AV939_01240 SM00862 Transcriptional regulatory protein, C terminal AV939_01250 SM00823 Phosphopantetheine attachment site AV939_01260 SM00823 Phosphopantetheine attachment site AV939_01270 SM00382 ATPases associated with a variety of cellular activities AV939_01285 SM00448 cheY-homologous receiver domain AV939_01290 SM00073 Histidine Phosphotransfer domain AV939_01290 SM00387 Histidine kinase-like ATPases AV939_01290 SM00388 His Kinase A (phosphoacceptor) domain AV939_01290 SM00448 cheY-homologous receiver domain AV939_01300 SM01130 AV939_01300 AV939_01350 SM00420 helix_turn_helix, Deoxyribose operon repressor AV939_01350 SM01134 AV939_01350 AV939_01385 SM00965 Secretin and TonB N terminus short domain AV939_01465 SM00316 Ribosomal protein S1-like RNA-binding domain AV939_01485 SM00634 Bacterial Ig-like domain (group 1) AV939_01500 SM00342 helix_turn_helix, arabinose operon control protein AV939_01505 SM01038 Beta galactosidase small chain AV939_01510 SM00448 cheY-homologous receiver domain AV939_01510 SM00862 Transcriptional regulatory protein, C terminal AV939_01515 SM00387 Histidine kinase-like ATPases AV939_01540 SM00478 endonuclease III AV939_01540 SM00525 AV939_01540 AV939_01580 SM00448 cheY-homologous receiver domain AV939_01580 SM00862 Transcriptional regulatory protein, C terminal AV939_01590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_01595 SM00448 cheY-homologous receiver domain AV939_01600 SM00073 Histidine Phosphotransfer domain AV939_01600 SM00260 Two component signalling adaptor domain AV939_01600 SM00387 Histidine kinase-like ATPases AV939_01600 SM01231 AV939_01600 AV939_01605 SM00260 Two component signalling adaptor domain AV939_01610 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV939_01610 SM00091 PAS domain AV939_01610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_01615 SM00138 Methyltransferase, chemotaxis proteins AV939_01625 SM00448 cheY-homologous receiver domain AV939_01655 SM00354 helix_turn _helix lactose operon repressor AV939_01680 SM00342 helix_turn_helix, arabinose operon control protein AV939_01680 SM00387 Histidine kinase-like ATPases AV939_01680 SM00388 His Kinase A (phosphoacceptor) domain AV939_01680 SM00448 cheY-homologous receiver domain AV939_01705 SM00354 helix_turn _helix lactose operon repressor AV939_01775 SM00855 Phosphoglycerate mutase family AV939_01785 SM00671 Sel1-like repeats. AV939_01790 SM00382 ATPases associated with a variety of cellular activities AV939_01795 SM01403 AV939_01795 AV939_01815 SM01382 AV939_01815 AV939_01815 SM01383 AV939_01815 AV939_01830 SM00322 K homology RNA-binding domain AV939_01880 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_01880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_01905 SM00487 DEAD-like helicases superfamily AV939_01905 SM00490 helicase superfamily c-terminal domain AV939_01935 SM00342 helix_turn_helix, arabinose operon control protein AV939_01950 SM00938 Nitrogen regulatory protein P-II AV939_01970 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AV939_02005 SM00073 Histidine Phosphotransfer domain AV939_02005 SM00387 Histidine kinase-like ATPases AV939_02005 SM00388 His Kinase A (phosphoacceptor) domain AV939_02005 SM00448 cheY-homologous receiver domain AV939_02010 SM00434 DNA Topoisomerase IV AV939_02020 SM00052 Putative diguanylate phosphodiesterase AV939_02020 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV939_02020 SM00267 diguanylate cyclase AV939_02025 SM01150 AV939_02025 AV939_02100 SM00965 Secretin and TonB N terminus short domain AV939_02120 SM00842 Cell division protein FtsA AV939_02130 SM00919 Malic enzyme, NAD binding domain AV939_02130 SM01274 AV939_02130 AV939_02160 SM00028 Tetratricopeptide repeats AV939_02170 SM00052 Putative diguanylate phosphodiesterase AV939_02200 SM00859 Semialdehyde dehydrogenase, NAD binding domain AV939_02205 SM00851 MGS-like domain AV939_02230 SM00448 cheY-homologous receiver domain AV939_02230 SM00862 Transcriptional regulatory protein, C terminal AV939_02235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_02235 SM00387 Histidine kinase-like ATPases AV939_02235 SM00388 His Kinase A (phosphoacceptor) domain AV939_02265 SM00450 Rhodanese Homology Domain AV939_02310 SM00479 AV939_02310 AV939_02330 SM00028 Tetratricopeptide repeats AV939_02385 SM00267 diguanylate cyclase AV939_02390 SM01004 Delta-aminolevulinic acid dehydratase AV939_02400 SM00487 DEAD-like helicases superfamily AV939_02400 SM00490 helicase superfamily c-terminal domain AV939_02410 SM00357 Cold shock protein domain AV939_02410 SM00382 ATPases associated with a variety of cellular activities AV939_02410 SM00959 Rho termination factor, N-terminal domain AV939_02420 SM00387 Histidine kinase-like ATPases AV939_02420 SM00388 His Kinase A (phosphoacceptor) domain AV939_02420 SM00448 cheY-homologous receiver domain AV939_02430 SM01001 AIR carboxylase AV939_02480 SM00788 Adenylosuccinate synthetase AV939_02535 SM01005 Alanine racemase, C-terminal domain AV939_02560 SM00062 Bacterial periplasmic substrate-binding proteins AV939_02565 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_02565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_02590 SM00360 RNA recognition motif AV939_02600 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV939_02735 SM00248 ankyrin repeats AV939_02760 SM00901 AV939_02760 AV939_02845 SM00829 Enoylreductase AV939_02860 SM00855 Phosphoglycerate mutase family AV939_02885 SM00729 Elongator protein 3, MiaB family, Radical SAM AV939_02890 SM00382 ATPases associated with a variety of cellular activities AV939_02920 SM00852 Probable molybdopterin binding domain AV939_03070 SM00257 Lysin motif AV939_03115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_03115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_03115 SM01049 AV939_03115 AV939_03140 SM00448 cheY-homologous receiver domain AV939_03140 SM00862 Transcriptional regulatory protein, C terminal AV939_03145 SM00388 His Kinase A (phosphoacceptor) domain AV939_03150 SM00287 Bacterial SH3 domain homologues AV939_03155 SM01118 AV939_03155 AV939_03165 SM00927 DNA mismatch repair enzyme MutH AV939_03175 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV939_03195 SM00448 cheY-homologous receiver domain AV939_03200 SM00267 diguanylate cyclase AV939_03205 SM00387 Histidine kinase-like ATPases AV939_03205 SM00388 His Kinase A (phosphoacceptor) domain AV939_03205 SM00448 cheY-homologous receiver domain AV939_03230 SM00487 DEAD-like helicases superfamily AV939_03230 SM00490 helicase superfamily c-terminal domain AV939_03235 SM00670 Large family of predicted nucleotide-binding domains AV939_03245 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV939_03245 SM00895 AV939_03245 AV939_03265 SM00829 Enoylreductase AV939_03270 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AV939_03290 SM00342 helix_turn_helix, arabinose operon control protein AV939_03330 SM00346 helix_turn_helix isocitrate lyase regulation AV939_03335 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV939_03335 SM00895 AV939_03335 AV939_03355 SM00028 Tetratricopeptide repeats AV939_03425 SM00635 Bacterial Ig-like domain 2 AV939_03450 SM00487 DEAD-like helicases superfamily AV939_03450 SM00490 helicase superfamily c-terminal domain AV939_03455 SM00028 Tetratricopeptide repeats AV939_03490 SM00387 Histidine kinase-like ATPases AV939_03490 SM00433 TopoisomeraseII AV939_03495 SM00052 Putative diguanylate phosphodiesterase AV939_03495 SM00091 PAS domain AV939_03495 SM00138 Methyltransferase, chemotaxis proteins AV939_03495 SM00267 diguanylate cyclase AV939_03500 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV939_03530 SM00841 Elongation factor P, C-terminal AV939_03530 SM01185 AV939_03530 AV939_03575 SM00014 Acid phosphatase homologues AV939_03585 SM01012 AV939_03585 AV939_03610 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AV939_03625 SM00091 PAS domain AV939_03625 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_03640 SM00382 ATPases associated with a variety of cellular activities AV939_03710 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AV939_03715 SM01007 Class II Aldolase and Adducin N-terminal domain AV939_03745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_03745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_03755 SM00400 zinc finger AV939_03755 SM00493 AV939_03755 AV939_03755 SM00766 DNA primase DnaG DnaB-binding AV939_03780 SM01207 AV939_03780 AV939_03785 SM00905 Dihydroneopterin aldolase AV939_03820 SM00530 Helix-turn-helix XRE-family like proteins AV939_03830 SM00387 Histidine kinase-like ATPases AV939_03835 SM00448 cheY-homologous receiver domain AV939_03835 SM00862 Transcriptional regulatory protein, C terminal AV939_03840 SM00387 Histidine kinase-like ATPases AV939_03840 SM00388 His Kinase A (phosphoacceptor) domain AV939_03850 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV939_03855 SM00710 Parallel beta-helix repeats AV939_03890 SM00028 Tetratricopeptide repeats AV939_03900 SM00448 cheY-homologous receiver domain AV939_03900 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV939_03905 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV939_03905 SM00091 PAS domain AV939_03905 SM00387 Histidine kinase-like ATPases AV939_03905 SM00388 His Kinase A (phosphoacceptor) domain AV939_03905 SM00448 cheY-homologous receiver domain AV939_03950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_03950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_03965 SM00650 Ribosomal RNA adenine dimethylases AV939_03985 SM00271 DnaJ molecular chaperone homology domain AV939_04030 SM00954 Region found in RelA / SpoT proteins AV939_04070 SM00965 Secretin and TonB N terminus short domain AV939_04075 SM00631 AV939_04075 AV939_04115 SM00342 helix_turn_helix, arabinose operon control protein AV939_04125 SM00116 Domain in cystathionine beta-synthase and other proteins. AV939_04125 SM00924 MgtE intracellular N domain AV939_04155 SM00382 ATPases associated with a variety of cellular activities AV939_04185 SM00382 ATPases associated with a variety of cellular activities AV939_04220 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV939_04225 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV939_04250 SM00342 helix_turn_helix, arabinose operon control protein AV939_04280 SM00052 Putative diguanylate phosphodiesterase AV939_04280 SM00267 diguanylate cyclase AV939_04285 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV939_04285 SM00387 Histidine kinase-like ATPases AV939_04285 SM00388 His Kinase A (phosphoacceptor) domain AV939_04285 SM00448 cheY-homologous receiver domain AV939_04295 SM00342 helix_turn_helix, arabinose operon control protein AV939_04315 SM01118 AV939_04315 AV939_04325 SM00861 Transketolase, pyrimidine binding domain AV939_04330 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV939_04375 SM00382 ATPases associated with a variety of cellular activities AV939_04425 SM00267 diguanylate cyclase AV939_04445 SM00342 helix_turn_helix, arabinose operon control protein AV939_04465 SM00342 helix_turn_helix, arabinose operon control protein AV939_04480 SM00758 AV939_04480 AV939_04480 SM01217 AV939_04480 AV939_04485 SM00347 helix_turn_helix multiple antibiotic resistance protein AV939_04495 SM01263 AV939_04495 AV939_04510 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV939_04510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_04525 SM00267 diguanylate cyclase AV939_04550 SM00382 ATPases associated with a variety of cellular activities AV939_04660 SM00448 cheY-homologous receiver domain AV939_04665 SM00091 PAS domain AV939_04685 SM00729 Elongator protein 3, MiaB family, Radical SAM AV939_04695 SM00487 DEAD-like helicases superfamily AV939_04695 SM00490 helicase superfamily c-terminal domain AV939_04705 SM00382 ATPases associated with a variety of cellular activities AV939_04730 SM01329 AV939_04730 AV939_04735 SM00917 LeuA allosteric (dimerisation) domain AV939_04755 SM01192 AV939_04755 AV939_04755 SM01193 AV939_04755 AV939_04765 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AV939_04765 SM00534 ATPase domain of DNA mismatch repair MUTS family AV939_04775 SM00382 ATPases associated with a variety of cellular activities AV939_04780 SM00382 ATPases associated with a variety of cellular activities AV939_04805 SM00382 ATPases associated with a variety of cellular activities AV939_04875 SM00382 ATPases associated with a variety of cellular activities AV939_04915 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV939_04920 SM01329 AV939_04920 AV939_04940 SM00267 diguanylate cyclase AV939_05030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV939_05075 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV939_05085 SM00935 Outer membrane protein (OmpH-like) AV939_05110 SM00481 DNA polymerase alpha chain like domain AV939_05120 SM00977 TilS substrate C-terminal domain AV939_05125 SM00267 diguanylate cyclase AV939_05145 SM00062 Bacterial periplasmic substrate-binding proteins AV939_05150 SM01211 AV939_05150 AV939_05155 SM00463 Small MutS-related domain AV939_05160 SM00062 Bacterial periplasmic substrate-binding proteins AV939_05160 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AV939_05185 SM00487 DEAD-like helicases superfamily AV939_05185 SM00490 helicase superfamily c-terminal domain AV939_05190 SM00882 Coenzyme A transferase AV939_05195 SM00882 Coenzyme A transferase AV939_05210 SM00387 Histidine kinase-like ATPases AV939_05255 SM00861 Transketolase, pyrimidine binding domain AV939_05270 SM00220 Serine/Threonine protein kinases, catalytic domain AV939_05295 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV939_05305 SM00945 ProQ/FINO family AV939_05310 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV939_05310 SM00245 tail specific protease AV939_05365 SM00981 AV939_05365 AV939_05375 SM00382 ATPases associated with a variety of cellular activities AV939_05515 SM00100 Cyclic nucleotide-monophosphate binding domain AV939_05515 SM00419 helix_turn_helix, cAMP Regulatory protein AV939_05540 SM00047 Lysozyme subfamily 2 AV939_05560 SM00450 Rhodanese Homology Domain AV939_05570 SM01144 AV939_05570 AV939_05615 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV939_05615 SM00465 GIY-YIG type nucleases (URI domain) AV939_05620 SM00421 helix_turn_helix, Lux Regulon AV939_05620 SM00448 cheY-homologous receiver domain AV939_05655 SM00388 His Kinase A (phosphoacceptor) domain AV939_05660 SM00448 cheY-homologous receiver domain AV939_05660 SM00862 Transcriptional regulatory protein, C terminal AV939_05725 SM00382 ATPases associated with a variety of cellular activities AV939_05735 SM00843 AV939_05735 AV939_05740 SM00344 helix_turn_helix ASNC type AV939_05745 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AV939_05745 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AV939_05750 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AV939_05755 SM00028 Tetratricopeptide repeats AV939_05770 SM00411 bacterial (prokaryotic) histone like domain AV939_05775 SM00316 Ribosomal protein S1-like RNA-binding domain AV939_05795 SM00434 DNA Topoisomerase IV AV939_05820 SM00387 Histidine kinase-like ATPases AV939_05820 SM00388 His Kinase A (phosphoacceptor) domain AV939_05825 SM00448 cheY-homologous receiver domain AV939_05825 SM00862 Transcriptional regulatory protein, C terminal AV939_05850 SM00422 helix_turn_helix, mercury resistance AV939_05865 SM01321 AV939_05865 AV939_05945 SM00382 ATPases associated with a variety of cellular activities AV939_05985 SM01130 AV939_05985 AV939_06070 SM00421 helix_turn_helix, Lux Regulon AV939_06070 SM00448 cheY-homologous receiver domain AV939_06100 SM00642 Alpha-amylase domain AV939_06105 SM00852 Probable molybdopterin binding domain AV939_06125 SM00382 ATPases associated with a variety of cellular activities AV939_06170 SM00563 Phosphate acyltransferases AV939_06205 SM00342 helix_turn_helix, arabinose operon control protein AV939_06235 SM00893 Electron transfer flavoprotein domain AV939_06240 SM00893 Electron transfer flavoprotein domain AV939_06250 SM00528 Domain in histone-like proteins of HNS family AV939_06270 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_06270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_06290 SM00354 helix_turn _helix lactose operon repressor AV939_06300 SM00797 Allophanate hydrolase subunit 2 AV939_06305 SM00796 Allophanate hydrolase subunit 1 AV939_06355 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV939_06360 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV939_06440 SM00382 ATPases associated with a variety of cellular activities AV939_06450 SM00316 Ribosomal protein S1-like RNA-binding domain AV939_06450 SM00322 K homology RNA-binding domain AV939_06455 SM00507 HNH nucleases AV939_06495 SM00046 Diacylglycerol kinase catalytic domain (presumed) AV939_06495 SM00195 Dual specificity phosphatase, catalytic domain AV939_06505 SM00052 Putative diguanylate phosphodiesterase AV939_06505 SM00267 diguanylate cyclase AV939_06505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_06535 SM00382 ATPases associated with a variety of cellular activities AV939_06545 SM01103 AV939_06545 AV939_06605 SM00936 Penicillin-binding protein 5, C-terminal domain AV939_06620 SM00729 Elongator protein 3, MiaB family, Radical SAM AV939_06630 SM00870 AV939_06630 AV939_06660 SM00731 SprT homologues. AV939_06690 SM00316 Ribosomal protein S1-like RNA-binding domain AV939_06695 SM00382 ATPases associated with a variety of cellular activities AV939_06695 SM01086 C-terminal, D2-small domain, of ClpB protein AV939_06705 SM00357 Cold shock protein domain AV939_06735 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AV939_06740 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AV939_06845 SM00710 Parallel beta-helix repeats AV939_06875 SM00354 helix_turn _helix lactose operon repressor AV939_06895 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV939_06960 SM00267 diguanylate cyclase AV939_07000 SM00825 Beta-ketoacyl synthase AV939_07010 SM00822 AV939_07010 AV939_07015 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AV939_07050 SM00363 S4 RNA-binding domain AV939_07055 SM00316 Ribosomal protein S1-like RNA-binding domain AV939_07060 SM00587 ZnF_C4 abd HLH domain containing kinases domain AV939_07130 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AV939_07130 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AV939_07130 SM00493 AV939_07130 AV939_07140 SM00634 Bacterial Ig-like domain (group 1) AV939_07155 SM00382 ATPases associated with a variety of cellular activities AV939_07160 SM00052 Putative diguanylate phosphodiesterase AV939_07190 SM00479 AV939_07190 AV939_07200 SM00829 Enoylreductase AV939_07205 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AV939_07220 SM00382 ATPases associated with a variety of cellular activities AV939_07220 SM00487 DEAD-like helicases superfamily AV939_07220 SM00490 helicase superfamily c-terminal domain AV939_07220 SM00847 Helicase associated domain (HA2) Add an annotation AV939_07230 SM00342 helix_turn_helix, arabinose operon control protein AV939_07255 SM00116 Domain in cystathionine beta-synthase and other proteins. AV939_07260 SM00387 Histidine kinase-like ATPases AV939_07260 SM00388 His Kinase A (phosphoacceptor) domain AV939_07260 SM00448 cheY-homologous receiver domain AV939_07265 SM00479 AV939_07265 AV939_07275 SM00062 Bacterial periplasmic substrate-binding proteins AV939_07275 SM00267 diguanylate cyclase AV939_07285 SM00422 helix_turn_helix, mercury resistance AV939_07305 SM00878 Biotin carboxylase C-terminal domain AV939_07315 SM01321 AV939_07315 AV939_07320 SM00052 Putative diguanylate phosphodiesterase AV939_07320 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV939_07320 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV939_07320 SM00091 PAS domain AV939_07320 SM00267 diguanylate cyclase AV939_07410 SM00487 DEAD-like helicases superfamily AV939_07410 SM00490 helicase superfamily c-terminal domain AV939_07410 SM00982 AV939_07410 AV939_07410 SM01058 CarD-like/TRCF domain AV939_07450 SM00411 bacterial (prokaryotic) histone like domain AV939_07455 SM00873 B3/4 domain AV939_07455 SM00874 tRNA synthetase B5 domain AV939_07455 SM00896 Ferredoxin-fold anticodon binding domain AV939_07475 SM00710 Parallel beta-helix repeats AV939_07535 SM00052 Putative diguanylate phosphodiesterase AV939_07535 SM00267 diguanylate cyclase AV939_07605 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AV939_07695 SM00387 Histidine kinase-like ATPases AV939_07695 SM00388 His Kinase A (phosphoacceptor) domain AV939_07695 SM00448 cheY-homologous receiver domain AV939_07700 SM00267 diguanylate cyclase AV939_07700 SM00448 cheY-homologous receiver domain AV939_07705 SM00052 Putative diguanylate phosphodiesterase AV939_07705 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV939_07705 SM00091 PAS domain AV939_07705 SM00267 diguanylate cyclase AV939_07705 SM00448 cheY-homologous receiver domain AV939_07740 SM01092 CO dehydrogenase flavoprotein C-terminal domain AV939_07745 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV939_07775 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV939_07775 SM00091 PAS domain AV939_07775 SM00267 diguanylate cyclase AV939_07795 SM00028 Tetratricopeptide repeats AV939_07795 SM00267 diguanylate cyclase AV939_07875 SM00052 Putative diguanylate phosphodiesterase AV939_07875 SM00267 diguanylate cyclase AV939_07905 SM00460 Transglutaminase/protease-like homologues AV939_07915 SM00331 Sigma factor PP2C-like phosphatases AV939_07915 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AV939_07920 SM01116 AV939_07920 AV939_07925 SM00838 Elongation factor G C-terminus AV939_07925 SM00889 Elongation factor G, domain IV AV939_07975 SM00937 AV939_07975 AV939_08000 SM01400 AV939_08000 AV939_08005 SM00052 Putative diguanylate phosphodiesterase AV939_08005 SM00267 diguanylate cyclase AV939_08015 SM00829 Enoylreductase AV939_08065 SM00903 Flavin reductase like domain AV939_08085 SM00729 Elongator protein 3, MiaB family, Radical SAM AV939_08100 SM00116 Domain in cystathionine beta-synthase and other proteins. AV939_08100 SM01091 Transporter associated domain AV939_08140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_08150 SM00851 MGS-like domain AV939_08150 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AV939_08155 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AV939_08175 SM00052 Putative diguanylate phosphodiesterase AV939_08175 SM00091 PAS domain AV939_08185 SM00271 DnaJ molecular chaperone homology domain AV939_08200 SM00387 Histidine kinase-like ATPases AV939_08200 SM00388 His Kinase A (phosphoacceptor) domain AV939_08200 SM00448 cheY-homologous receiver domain AV939_08205 SM00421 helix_turn_helix, Lux Regulon AV939_08205 SM00448 cheY-homologous receiver domain AV939_08270 SM01266 AV939_08270 AV939_08285 SM00363 S4 RNA-binding domain AV939_08305 SM00481 DNA polymerase alpha chain like domain AV939_08355 SM00448 cheY-homologous receiver domain AV939_08355 SM00862 Transcriptional regulatory protein, C terminal AV939_08360 SM00387 Histidine kinase-like ATPases AV939_08370 SM00905 Dihydroneopterin aldolase AV939_08385 SM00382 ATPases associated with a variety of cellular activities AV939_08400 SM01321 AV939_08400 AV939_08455 SM00028 Tetratricopeptide repeats AV939_08455 SM00448 cheY-homologous receiver domain AV939_08465 SM00729 Elongator protein 3, MiaB family, Radical SAM AV939_08470 SM00382 ATPases associated with a variety of cellular activities AV939_08490 SM00382 ATPases associated with a variety of cellular activities AV939_08500 SM00226 Low molecular weight phosphatase family AV939_08525 SM00729 Elongator protein 3, MiaB family, Radical SAM AV939_08525 SM00876 Biotin and Thiamin Synthesis associated domain AV939_08590 SM00267 diguanylate cyclase AV939_08630 SM00116 Domain in cystathionine beta-synthase and other proteins. AV939_08635 SM00829 Enoylreductase AV939_08640 SM00829 Enoylreductase AV939_08665 SM00859 Semialdehyde dehydrogenase, NAD binding domain AV939_08695 SM00028 Tetratricopeptide repeats AV939_08695 SM00387 Histidine kinase-like ATPases AV939_08695 SM00388 His Kinase A (phosphoacceptor) domain AV939_08695 SM00448 cheY-homologous receiver domain AV939_08745 SM00267 diguanylate cyclase AV939_08790 SM00028 Tetratricopeptide repeats AV939_08825 SM00382 ATPases associated with a variety of cellular activities AV939_08830 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV939_08855 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV939_08860 SM00382 ATPases associated with a variety of cellular activities AV939_08860 SM00448 cheY-homologous receiver domain AV939_08870 SM00387 Histidine kinase-like ATPases AV939_08870 SM00388 His Kinase A (phosphoacceptor) domain AV939_08880 SM00052 Putative diguanylate phosphodiesterase AV939_08880 SM00267 diguanylate cyclase AV939_08890 SM00331 Sigma factor PP2C-like phosphatases AV939_08890 SM00448 cheY-homologous receiver domain AV939_08905 SM00448 cheY-homologous receiver domain AV939_08910 SM00830 Chorismate mutase type II AV939_08915 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_08915 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_08920 SM00830 Chorismate mutase type II AV939_08980 SM00382 ATPases associated with a variety of cellular activities AV939_09025 SM00382 ATPases associated with a variety of cellular activities AV939_09025 SM00962 SRP54-type protein, GTPase domain AV939_09025 SM00963 SRP54-type protein, helical bundle domain AV939_09035 SM01091 Transporter associated domain AV939_09045 SM00855 Phosphoglycerate mutase family AV939_09055 SM00052 Putative diguanylate phosphodiesterase AV939_09055 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV939_09055 SM00091 PAS domain AV939_09055 SM00267 diguanylate cyclase AV939_09090 SM00327 von Willebrand factor (vWF) type A domain AV939_09095 SM00028 Tetratricopeptide repeats AV939_09120 SM00267 diguanylate cyclase AV939_09210 SM00487 DEAD-like helicases superfamily AV939_09210 SM00490 helicase superfamily c-terminal domain AV939_09250 SM00900 AV939_09250 AV939_09260 SM00478 endonuclease III AV939_09260 SM00525 AV939_09260 AV939_09300 SM00028 Tetratricopeptide repeats AV939_09305 SM00267 diguanylate cyclase AV939_09315 SM00357 Cold shock protein domain AV939_09335 SM00479 AV939_09335 AV939_09350 SM00965 Secretin and TonB N terminus short domain AV939_09380 SM00763 PrkA AAA domain AV939_09415 SM00463 Small MutS-related domain AV939_09420 SM00387 Histidine kinase-like ATPases AV939_09425 SM00382 ATPases associated with a variety of cellular activities AV939_09425 SM00448 cheY-homologous receiver domain AV939_09440 SM00382 ATPases associated with a variety of cellular activities AV939_09450 SM01321 AV939_09450 AV939_09490 SM00937 AV939_09490 AV939_09525 SM00052 Putative diguanylate phosphodiesterase AV939_09525 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV939_09525 SM00091 PAS domain AV939_09525 SM00267 diguanylate cyclase AV939_09530 SM00836 DALR anticodon binding domain AV939_09530 SM01016 Arginyl tRNA synthetase N terminal dom AV939_09600 SM00028 Tetratricopeptide repeats AV939_09630 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV939_09635 SM00028 Tetratricopeptide repeats AV939_09650 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV939_09685 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AV939_09690 SM00344 helix_turn_helix ASNC type AV939_09705 SM00091 PAS domain AV939_09705 SM00382 ATPases associated with a variety of cellular activities AV939_09730 SM00382 ATPases associated with a variety of cellular activities AV939_09750 SM00382 ATPases associated with a variety of cellular activities AV939_09755 SM00382 ATPases associated with a variety of cellular activities AV939_09800 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AV939_09835 SM00947 Carbonic anhydrase AV939_09855 SM01018 B12 binding domain AV939_09875 SM00260 Two component signalling adaptor domain AV939_09880 SM00260 Two component signalling adaptor domain AV939_09890 SM00448 cheY-homologous receiver domain AV939_09895 SM00073 Histidine Phosphotransfer domain AV939_09895 SM00260 Two component signalling adaptor domain AV939_09895 SM00387 Histidine kinase-like ATPases AV939_09895 SM01231 AV939_09895 AV939_09905 SM00448 cheY-homologous receiver domain AV939_09920 SM00382 ATPases associated with a variety of cellular activities AV939_09920 SM00962 SRP54-type protein, GTPase domain AV939_09980 SM00382 ATPases associated with a variety of cellular activities AV939_10005 SM00382 ATPases associated with a variety of cellular activities AV939_10005 SM00448 cheY-homologous receiver domain AV939_10010 SM00387 Histidine kinase-like ATPases AV939_10010 SM00388 His Kinase A (phosphoacceptor) domain AV939_10015 SM00382 ATPases associated with a variety of cellular activities AV939_10045 SM00858 AV939_10045 AV939_10065 SM00822 AV939_10065 AV939_10180 SM00047 Lysozyme subfamily 2 AV939_10225 SM00138 Methyltransferase, chemotaxis proteins AV939_10230 SM00260 Two component signalling adaptor domain AV939_10230 SM00448 cheY-homologous receiver domain AV939_10235 SM00858 AV939_10235 AV939_10265 SM00052 Putative diguanylate phosphodiesterase AV939_10270 SM00421 helix_turn_helix, Lux Regulon AV939_10280 SM00382 ATPases associated with a variety of cellular activities AV939_10310 SM00530 Helix-turn-helix XRE-family like proteins AV939_10370 SM00363 S4 RNA-binding domain AV939_10375 SM00054 EF-hand, calcium binding motif AV939_10380 SM00450 Rhodanese Homology Domain AV939_10390 SM00028 Tetratricopeptide repeats AV939_10390 SM00448 cheY-homologous receiver domain AV939_10405 SM00448 cheY-homologous receiver domain AV939_10405 SM00850 LytTr DNA-binding domain AV939_10425 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV939_10550 SM00354 helix_turn _helix lactose operon repressor AV939_10555 SM00642 Alpha-amylase domain AV939_10565 SM00642 Alpha-amylase domain AV939_10570 SM00642 Alpha-amylase domain AV939_10610 SM00881 CoA binding domain AV939_10625 SM00861 Transketolase, pyrimidine binding domain AV939_10695 SM00729 Elongator protein 3, MiaB family, Radical SAM AV939_10720 SM00382 ATPases associated with a variety of cellular activities AV939_10735 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV939_10735 SM00292 breast cancer carboxy-terminal domain AV939_10735 SM00532 Ligase N family AV939_10740 SM00771 ZipA, C-terminal domain (FtsZ-binding) AV939_10760 SM00028 Tetratricopeptide repeats AV939_10815 SM00028 Tetratricopeptide repeats AV939_10830 SM00347 helix_turn_helix multiple antibiotic resistance protein AV939_10915 SM00458 Ricin-type beta-trefoil AV939_11000 SM00052 Putative diguanylate phosphodiesterase AV939_11000 SM00267 diguanylate cyclase AV939_11000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_11015 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV939_11015 SM00267 diguanylate cyclase AV939_11035 SM00382 ATPases associated with a variety of cellular activities AV939_11075 SM00729 Elongator protein 3, MiaB family, Radical SAM AV939_11125 SM00028 Tetratricopeptide repeats AV939_11125 SM00448 cheY-homologous receiver domain AV939_11130 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV939_11150 SM00267 diguanylate cyclase AV939_11165 SM01387 AV939_11165 AV939_11185 SM00316 Ribosomal protein S1-like RNA-binding domain AV939_11195 SM00448 cheY-homologous receiver domain AV939_11195 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV939_11200 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV939_11200 SM00091 PAS domain AV939_11200 SM00387 Histidine kinase-like ATPases AV939_11200 SM00388 His Kinase A (phosphoacceptor) domain AV939_11200 SM00448 cheY-homologous receiver domain AV939_11415 SM00387 Histidine kinase-like ATPases AV939_11415 SM00388 His Kinase A (phosphoacceptor) domain AV939_11415 SM00448 cheY-homologous receiver domain AV939_11485 SM00052 Putative diguanylate phosphodiesterase AV939_11485 SM00267 diguanylate cyclase AV939_11490 SM00849 Metallo-beta-lactamase superfamily AV939_11530 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AV939_11535 SM00450 Rhodanese Homology Domain AV939_11550 SM00382 ATPases associated with a variety of cellular activities AV939_11550 SM00448 cheY-homologous receiver domain AV939_11560 SM00387 Histidine kinase-like ATPases AV939_11560 SM00388 His Kinase A (phosphoacceptor) domain AV939_11565 SM00448 cheY-homologous receiver domain AV939_11570 SM00387 Histidine kinase-like ATPases AV939_11570 SM00388 His Kinase A (phosphoacceptor) domain AV939_11570 SM00448 cheY-homologous receiver domain AV939_11635 SM00631 AV939_11635 AV939_11640 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV939_11655 SM01350 AV939_11655 AV939_11660 SM00642 Alpha-amylase domain AV939_11665 SM00642 Alpha-amylase domain AV939_11675 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV939_11740 SM00749 bacterial OsmY and nodulation domain AV939_11765 SM00387 Histidine kinase-like ATPases AV939_11765 SM00388 His Kinase A (phosphoacceptor) domain AV939_11770 SM00448 cheY-homologous receiver domain AV939_11770 SM00862 Transcriptional regulatory protein, C terminal AV939_11805 SM00822 AV939_11805 AV939_11830 SM00354 helix_turn _helix lactose operon repressor AV939_11835 SM00858 AV939_11835 AV939_11870 SM00710 Parallel beta-helix repeats AV939_11880 SM00387 Histidine kinase-like ATPases AV939_11880 SM00388 His Kinase A (phosphoacceptor) domain AV939_11880 SM00448 cheY-homologous receiver domain AV939_11925 SM00354 helix_turn _helix lactose operon repressor AV939_11930 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AV939_11950 SM00052 Putative diguanylate phosphodiesterase AV939_11950 SM00267 diguanylate cyclase AV939_11995 SM00267 diguanylate cyclase AV939_12005 SM00448 cheY-homologous receiver domain AV939_12005 SM00862 Transcriptional regulatory protein, C terminal AV939_12010 SM00387 Histidine kinase-like ATPases AV939_12010 SM00388 His Kinase A (phosphoacceptor) domain AV939_12070 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_12070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_12080 SM01060 AV939_12080 AV939_12090 SM00244 prohibitin homologues AV939_12105 SM00100 Cyclic nucleotide-monophosphate binding domain AV939_12155 SM00849 Metallo-beta-lactamase superfamily AV939_12160 SM00257 Lysin motif AV939_12195 SM00354 helix_turn _helix lactose operon repressor AV939_12250 SM00840 AV939_12250 AV939_12265 SM00098 Alkaline phosphatase homologues AV939_12270 SM00098 Alkaline phosphatase homologues AV939_12285 SM00244 prohibitin homologues AV939_12290 SM01321 AV939_12290 AV939_12305 SM00382 ATPases associated with a variety of cellular activities AV939_12310 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV939_12315 SM01092 CO dehydrogenase flavoprotein C-terminal domain AV939_12330 SM00829 Enoylreductase AV939_12420 SM00859 Semialdehyde dehydrogenase, NAD binding domain AV939_12430 SM01007 Class II Aldolase and Adducin N-terminal domain AV939_12435 SM00100 Cyclic nucleotide-monophosphate binding domain AV939_12435 SM00419 helix_turn_helix, cAMP Regulatory protein AV939_12440 SM00825 Beta-ketoacyl synthase AV939_12445 SM00267 diguanylate cyclase AV939_12520 SM00420 helix_turn_helix, Deoxyribose operon repressor AV939_12595 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV939_12635 SM00341 Helicase and RNase D C-terminal AV939_12635 SM00474 3'-5' exonuclease AV939_12665 SM00487 DEAD-like helicases superfamily AV939_12665 SM00488 AV939_12665 AV939_12665 SM00491 AV939_12665 AV939_12670 SM00642 Alpha-amylase domain AV939_12775 SM01236 AV939_12775 AV939_12820 SM00387 Histidine kinase-like ATPases AV939_12820 SM00388 His Kinase A (phosphoacceptor) domain AV939_12825 SM00448 cheY-homologous receiver domain AV939_12825 SM00862 Transcriptional regulatory protein, C terminal AV939_12830 SM00849 Metallo-beta-lactamase superfamily AV939_12855 SM00387 Histidine kinase-like ATPases AV939_12860 SM00493 AV939_12860 AV939_12885 SM00382 ATPases associated with a variety of cellular activities AV939_12910 SM00862 Transcriptional regulatory protein, C terminal AV939_12925 SM00091 PAS domain AV939_12925 SM00267 diguanylate cyclase AV939_12930 SM00054 EF-hand, calcium binding motif AV939_12975 SM00028 Tetratricopeptide repeats AV939_12980 SM00382 ATPases associated with a variety of cellular activities AV939_12980 SM01086 C-terminal, D2-small domain, of ClpB protein AV939_12990 SM00363 S4 RNA-binding domain AV939_13060 SM00861 Transketolase, pyrimidine binding domain AV939_13115 SM00382 ATPases associated with a variety of cellular activities AV939_13125 SM00382 ATPases associated with a variety of cellular activities AV939_13160 SM00358 Double-stranded RNA binding motif AV939_13160 SM00535 Ribonuclease III family AV939_13170 SM00838 Elongation factor G C-terminus AV939_13225 SM00938 Nitrogen regulatory protein P-II AV939_13310 SM00904 Riboflavin kinase AV939_13355 SM00563 Phosphate acyltransferases AV939_13370 SM00411 bacterial (prokaryotic) histone like domain AV939_13375 SM00382 ATPases associated with a variety of cellular activities AV939_13375 SM00464 Found in ATP-dependent protease La (LON) AV939_13380 SM00382 ATPases associated with a variety of cellular activities AV939_13380 SM00994 ClpX C4-type zinc finger AV939_13380 SM01086 C-terminal, D2-small domain, of ClpB protein AV939_13455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_13470 SM00116 Domain in cystathionine beta-synthase and other proteins. AV939_13470 SM01240 AV939_13470 AV939_13485 SM00382 ATPases associated with a variety of cellular activities AV939_13490 SM00564 beta-propeller repeat AV939_13510 SM00530 Helix-turn-helix XRE-family like proteins AV939_13515 SM00028 Tetratricopeptide repeats AV939_13515 SM00257 Lysin motif AV939_13525 SM00562 AV939_13525 AV939_13555 SM00382 ATPases associated with a variety of cellular activities AV939_13595 SM00850 LytTr DNA-binding domain AV939_13600 SM00052 Putative diguanylate phosphodiesterase AV939_13600 SM00267 diguanylate cyclase AV939_13600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_13625 SM01323 AV939_13625 AV939_13695 SM00098 Alkaline phosphatase homologues AV939_13700 SM00260 Two component signalling adaptor domain AV939_13700 SM00448 cheY-homologous receiver domain AV939_13745 SM00028 Tetratricopeptide repeats AV939_13870 SM00382 ATPases associated with a variety of cellular activities AV939_13940 SM00052 Putative diguanylate phosphodiesterase AV939_13940 SM00267 diguanylate cyclase AV939_13955 SM00354 helix_turn _helix lactose operon repressor AV939_13990 SM00460 Transglutaminase/protease-like homologues AV939_14005 SM00967 RNA 2'-O ribose methyltransferase substrate binding AV939_14030 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AV939_14035 SM00342 helix_turn_helix, arabinose operon control protein AV939_14040 SM00220 Serine/Threonine protein kinases, catalytic domain AV939_14090 SM00822 AV939_14090 AV939_14130 SM00422 helix_turn_helix, mercury resistance AV939_14155 SM00060 Fibronectin type 3 domain AV939_14155 SM00631 AV939_14155 AV939_14330 SM00642 Alpha-amylase domain AV939_14555 SM00422 helix_turn_helix, mercury resistance AV939_14620 SM00382 ATPases associated with a variety of cellular activities AV939_14655 SM00347 helix_turn_helix multiple antibiotic resistance protein AV939_14675 SM00487 DEAD-like helicases superfamily AV939_14675 SM00490 helicase superfamily c-terminal domain AV939_14680 SM01322 AV939_14680 AV939_14685 SM00347 helix_turn_helix multiple antibiotic resistance protein AV939_14710 SM00271 DnaJ molecular chaperone homology domain AV939_14730 SM00382 ATPases associated with a variety of cellular activities AV939_14755 SM00862 Transcriptional regulatory protein, C terminal AV939_14770 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV939_14795 SM00245 tail specific protease AV939_14825 SM00090 RIO-like kinase AV939_14845 SM00342 helix_turn_helix, arabinose operon control protein AV939_14860 SM00487 DEAD-like helicases superfamily AV939_14860 SM00490 helicase superfamily c-terminal domain AV939_14875 SM00028 Tetratricopeptide repeats AV939_14885 SM00327 von Willebrand factor (vWF) type A domain AV939_15025 SM00354 helix_turn _helix lactose operon repressor AV939_15035 SM00640 Glycosyl hydrolases family 32 AV939_15085 SM01011 Aminopeptidase P, N-terminal domain AV939_15110 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV939_15110 SM00387 Histidine kinase-like ATPases AV939_15110 SM00388 His Kinase A (phosphoacceptor) domain AV939_15110 SM00448 cheY-homologous receiver domain AV939_15200 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV939_15200 SM00895 AV939_15200 AV939_15210 SM00644 AV939_15210 AV939_15265 SM00957 SecA DEAD-like domain AV939_15265 SM00958 SecA preprotein cross-linking domain AV939_15280 SM00864 Tubulin/FtsZ family, GTPase domain AV939_15280 SM00865 Tubulin/FtsZ family, C-terminal domain AV939_15285 SM00842 Cell division protein FtsA AV939_15395 SM00028 Tetratricopeptide repeats AV939_15395 SM00267 diguanylate cyclase AV939_15405 SM00382 ATPases associated with a variety of cellular activities AV939_15405 SM00448 cheY-homologous receiver domain AV939_15410 SM00387 Histidine kinase-like ATPases AV939_15450 SM00732 Likely ribonuclease with RNase H fold. AV939_15460 SM00382 ATPases associated with a variety of cellular activities AV939_15490 SM01321 AV939_15490 AV939_15535 SM00986 Uracil DNA glycosylase superfamily AV939_15535 SM00987 UreE urease accessory protein, C-terminal domain AV939_15560 SM00829 Enoylreductase AV939_15565 SM00421 helix_turn_helix, Lux Regulon AV939_15565 SM00448 cheY-homologous receiver domain AV939_15590 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AV939_15595 SM00226 Low molecular weight phosphatase family AV939_15610 SM00448 cheY-homologous receiver domain AV939_15620 SM00448 cheY-homologous receiver domain AV939_15620 SM00862 Transcriptional regulatory protein, C terminal AV939_15625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_15625 SM00387 Histidine kinase-like ATPases AV939_15625 SM00388 His Kinase A (phosphoacceptor) domain AV939_15735 SM00421 helix_turn_helix, Lux Regulon AV939_15735 SM00448 cheY-homologous receiver domain AV939_15745 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV939_15745 SM00895 AV939_15745 AV939_15770 SM00267 diguanylate cyclase AV939_15770 SM00448 cheY-homologous receiver domain AV939_15815 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV939_15815 SM00091 PAS domain AV939_15815 SM00387 Histidine kinase-like ATPases AV939_15815 SM00388 His Kinase A (phosphoacceptor) domain AV939_15815 SM00448 cheY-homologous receiver domain AV939_15835 SM00530 Helix-turn-helix XRE-family like proteins AV939_15840 SM00656 AV939_15840 AV939_15855 SM00346 helix_turn_helix isocitrate lyase regulation AV939_15860 SM00458 Ricin-type beta-trefoil AV939_15860 SM00656 AV939_15860 AV939_15890 SM00450 Rhodanese Homology Domain AV939_16025 SM00448 cheY-homologous receiver domain AV939_16040 SM01230 AV939_16040 AV939_16050 SM00091 PAS domain AV939_16050 SM00387 Histidine kinase-like ATPases AV939_16050 SM00388 His Kinase A (phosphoacceptor) domain AV939_16055 SM00382 ATPases associated with a variety of cellular activities AV939_16055 SM00448 cheY-homologous receiver domain AV939_16060 SM00073 Histidine Phosphotransfer domain AV939_16065 SM00563 Phosphate acyltransferases AV939_16080 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV939_16080 SM00091 PAS domain AV939_16080 SM00267 diguanylate cyclase AV939_16090 SM00387 Histidine kinase-like ATPases AV939_16090 SM00388 His Kinase A (phosphoacceptor) domain AV939_16090 SM00448 cheY-homologous receiver domain AV939_16090 SM01358 AV939_16090 AV939_16260 SM00267 diguanylate cyclase AV939_16265 SM00996 S-adenosyl-L-homocysteine hydrolase AV939_16265 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AV939_16315 SM00028 Tetratricopeptide repeats AV939_16325 SM00387 Histidine kinase-like ATPases AV939_16330 SM01034 Sensors of blue-light using FAD AV939_16340 SM00382 ATPases associated with a variety of cellular activities AV939_16365 SM00267 diguanylate cyclase AV939_16370 SM00028 Tetratricopeptide repeats AV939_16370 SM00267 diguanylate cyclase AV939_16380 SM00564 beta-propeller repeat AV939_16385 SM00062 Bacterial periplasmic substrate-binding proteins AV939_16400 SM00382 ATPases associated with a variety of cellular activities AV939_16430 SM00729 Elongator protein 3, MiaB family, Radical SAM AV939_16455 SM00421 helix_turn_helix, Lux Regulon AV939_16455 SM00448 cheY-homologous receiver domain AV939_16460 SM00091 PAS domain AV939_16460 SM00387 Histidine kinase-like ATPases AV939_16460 SM00388 His Kinase A (phosphoacceptor) domain AV939_16460 SM00448 cheY-homologous receiver domain AV939_16465 SM00897 FIST N domain AV939_16465 SM01204 AV939_16465 AV939_16470 SM00900 AV939_16470 AV939_16480 SM00421 helix_turn_helix, Lux Regulon AV939_16480 SM00448 cheY-homologous receiver domain AV939_16495 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV939_16495 SM00895 AV939_16495 AV939_16530 SM00710 Parallel beta-helix repeats AV939_16545 SM00710 Parallel beta-helix repeats AV939_16550 SM00822 AV939_16550 AV939_16585 SM00240 Forkhead associated domain AV939_16590 SM00331 Sigma factor PP2C-like phosphatases AV939_16590 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AV939_16595 SM00240 Forkhead associated domain AV939_16605 SM00240 Forkhead associated domain AV939_16620 SM00220 Serine/Threonine protein kinases, catalytic domain AV939_16625 SM00331 Sigma factor PP2C-like phosphatases AV939_16625 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AV939_16630 SM00240 Forkhead associated domain AV939_16635 SM00240 Forkhead associated domain AV939_16635 SM00382 ATPases associated with a variety of cellular activities AV939_16640 SM00487 DEAD-like helicases superfamily AV939_16640 SM00490 helicase superfamily c-terminal domain AV939_16655 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV939_16655 SM00895 AV939_16655 AV939_16690 SM00267 diguanylate cyclase AV939_16695 SM00155 Phospholipase D. Active site motifs. AV939_16725 SM00448 cheY-homologous receiver domain AV939_16735 SM00387 Histidine kinase-like ATPases AV939_16740 SM00849 Metallo-beta-lactamase superfamily AV939_16745 SM00486 DNA polymerase type-B family AV939_16750 SM00054 EF-hand, calcium binding motif AV939_16780 SM00360 RNA recognition motif AV939_16820 SM00986 Uracil DNA glycosylase superfamily AV939_16820 SM00987 UreE urease accessory protein, C-terminal domain AV939_16825 SM00052 Putative diguanylate phosphodiesterase AV939_16825 SM00267 diguanylate cyclase AV939_16825 SM00448 cheY-homologous receiver domain AV939_16900 SM00173 Ras subfamily of RAS small GTPases AV939_16900 SM00175 Rab subfamily of small GTPases AV939_16905 SM00052 Putative diguanylate phosphodiesterase AV939_16905 SM00267 diguanylate cyclase AV939_16915 SM00563 Phosphate acyltransferases AV939_16920 SM00563 Phosphate acyltransferases AV939_17045 SM00052 Putative diguanylate phosphodiesterase AV939_17045 SM00267 diguanylate cyclase AV939_17060 SM00849 Metallo-beta-lactamase superfamily AV939_17090 SM00344 helix_turn_helix ASNC type AV939_17095 SM00100 Cyclic nucleotide-monophosphate binding domain AV939_17105 SM00849 Metallo-beta-lactamase superfamily AV939_17145 SM00900 AV939_17145 AV939_17230 SM00028 Tetratricopeptide repeats AV939_17235 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AV939_17245 SM00267 diguanylate cyclase AV939_17245 SM00448 cheY-homologous receiver domain AV939_17250 SM00479 AV939_17250 AV939_17255 SM00116 Domain in cystathionine beta-synthase and other proteins. AV939_17270 SM00387 Histidine kinase-like ATPases AV939_17270 SM00388 His Kinase A (phosphoacceptor) domain AV939_17270 SM00448 cheY-homologous receiver domain AV939_17300 SM00421 helix_turn_helix, Lux Regulon AV939_17300 SM00448 cheY-homologous receiver domain AV939_17315 SM00632 AV939_17315 AV939_17315 SM00642 Alpha-amylase domain AV939_17330 SM01358 AV939_17330 AV939_17335 SM00248 ankyrin repeats AV939_17340 SM01060 AV939_17340 AV939_17450 SM00984 UDP binding domain AV939_17550 SM00662 RNA polymerases D AV939_17555 SM00363 S4 RNA-binding domain AV939_17555 SM01390 AV939_17555 AV939_17615 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AV939_17620 SM01374 AV939_17620 AV939_17625 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV939_17625 SM00387 Histidine kinase-like ATPases AV939_17625 SM00388 His Kinase A (phosphoacceptor) domain AV939_17625 SM00448 cheY-homologous receiver domain AV939_17640 SM00967 RNA 2'-O ribose methyltransferase substrate binding AV939_17645 SM00316 Ribosomal protein S1-like RNA-binding domain AV939_17645 SM00357 Cold shock protein domain AV939_17645 SM00955 AV939_17645 AV939_17660 SM00671 Sel1-like repeats. AV939_17710 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_17715 SM00344 helix_turn_helix ASNC type AV939_17730 SM00357 Cold shock protein domain AV939_17760 SM00448 cheY-homologous receiver domain AV939_17770 SM00387 Histidine kinase-like ATPases AV939_17775 SM00448 cheY-homologous receiver domain AV939_17785 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AV939_17805 SM00382 ATPases associated with a variety of cellular activities AV939_17810 SM00421 helix_turn_helix, Lux Regulon AV939_17825 SM00382 ATPases associated with a variety of cellular activities AV939_17825 SM01086 C-terminal, D2-small domain, of ClpB protein AV939_17840 SM00487 DEAD-like helicases superfamily AV939_17840 SM00490 helicase superfamily c-terminal domain AV939_17855 SM00919 Malic enzyme, NAD binding domain AV939_17855 SM01274 AV939_17855 AV939_17905 SM00052 Putative diguanylate phosphodiesterase AV939_17910 SM00052 Putative diguanylate phosphodiesterase AV939_17920 SM00382 ATPases associated with a variety of cellular activities AV939_17925 SM00382 ATPases associated with a variety of cellular activities AV939_17925 SM00962 SRP54-type protein, GTPase domain AV939_17925 SM00963 SRP54-type protein, helical bundle domain AV939_17995 SM00052 Putative diguanylate phosphodiesterase AV939_18010 SM00382 ATPases associated with a variety of cellular activities AV939_18015 SM00448 cheY-homologous receiver domain AV939_18015 SM00862 Transcriptional regulatory protein, C terminal AV939_18020 SM00387 Histidine kinase-like ATPases AV939_18020 SM00388 His Kinase A (phosphoacceptor) domain AV939_18030 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV939_18045 SM00116 Domain in cystathionine beta-synthase and other proteins. AV939_18110 SM00838 Elongation factor G C-terminus AV939_18110 SM00889 Elongation factor G, domain IV AV939_18125 SM00663 RNA polymerase I subunit A N-terminus AV939_18150 SM00649 Ribosomal protein L11/L12 AV939_18155 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AV939_18155 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AV939_18170 SM00382 ATPases associated with a variety of cellular activities AV939_18190 SM00487 DEAD-like helicases superfamily AV939_18190 SM00490 helicase superfamily c-terminal domain AV939_18200 SM00782 PhnA Zinc-Ribbon AV939_18220 SM00642 Alpha-amylase domain AV939_18265 SM00247 Beta/gamma crystallins AV939_18275 SM00487 DEAD-like helicases superfamily AV939_18275 SM00490 helicase superfamily c-terminal domain AV939_18365 SM00244 prohibitin homologues AV939_18370 SM00244 prohibitin homologues AV939_18390 SM01340 AV939_18390 AV939_18395 SM00257 Lysin motif AV939_18395 SM00646 AV939_18395 AV939_18455 SM00382 ATPases associated with a variety of cellular activities AV939_18510 SM00387 Histidine kinase-like ATPases AV939_18510 SM00388 His Kinase A (phosphoacceptor) domain AV939_18520 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_18525 SM00387 Histidine kinase-like ATPases AV939_18530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV939_18535 SM00354 helix_turn _helix lactose operon repressor AV939_18555 SM00382 ATPases associated with a variety of cellular activities AV939_18615 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV939_18615 SM00866 AV939_18615 AV939_18675 SM00382 ATPases associated with a variety of cellular activities AV939_18680 SM00382 ATPases associated with a variety of cellular activities AV939_18705 SM00382 ATPases associated with a variety of cellular activities AV939_18740 SM00841 Elongation factor P, C-terminal AV939_18740 SM01185 AV939_18740 AV939_18880 SM00867 YceI-like domain AV939_18915 SM00829 Enoylreductase AV939_18920 SM00267 diguanylate cyclase AV939_18925 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_18925 SM00387 Histidine kinase-like ATPases AV939_18925 SM00388 His Kinase A (phosphoacceptor) domain AV939_18925 SM00448 cheY-homologous receiver domain AV939_18950 SM00382 ATPases associated with a variety of cellular activities AV939_19020 SM00420 helix_turn_helix, Deoxyribose operon repressor AV939_19020 SM01134 AV939_19020 AV939_19030 SM00267 diguanylate cyclase AV939_19045 SM00342 helix_turn_helix, arabinose operon control protein AV939_19045 SM01009 AlkA N-terminal domain AV939_19075 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AV939_19075 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AV939_19095 SM00833 Cobalamin synthesis protein cobW C-terminal domain AV939_19105 SM00052 Putative diguanylate phosphodiesterase AV939_19105 SM00267 diguanylate cyclase AV939_19115 SM00883 Chaperonin 10 Kd subunit AV939_19145 SM00878 Biotin carboxylase C-terminal domain AV939_19165 SM00479 AV939_19165 AV939_19165 SM00990 AV939_19165 AV939_19190 SM00062 Bacterial periplasmic substrate-binding proteins AV939_19210 SM00798 AICARFT/IMPCHase bienzyme AV939_19210 SM00851 MGS-like domain AV939_19220 SM01209 AV939_19220 AV939_19220 SM01210 AV939_19220 AV939_19260 SM00448 cheY-homologous receiver domain AV939_19260 SM00862 Transcriptional regulatory protein, C terminal AV939_19265 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV939_19265 SM00387 Histidine kinase-like ATPases AV939_19265 SM00388 His Kinase A (phosphoacceptor) domain AV939_19285 SM00363 S4 RNA-binding domain AV939_19300 SM00382 ATPases associated with a variety of cellular activities AV939_19350 SM00849 Metallo-beta-lactamase superfamily AV939_19380 SM00867 YceI-like domain AV939_19415 SM00382 ATPases associated with a variety of cellular activities AV939_19435 SM00320 WD40 repeats AV939_19455 SM00316 Ribosomal protein S1-like RNA-binding domain AV939_19455 SM00732 Likely ribonuclease with RNase H fold. AV939_19480 SM00631 AV939_19480 AV939_19510 SM00342 helix_turn_helix, arabinose operon control protein AV939_19510 SM00871 Bacterial transcription activator, effector binding domain AV939_19595 SM00563 Phosphate acyltransferases AV939_19620 SM00382 ATPases associated with a variety of cellular activities AV939_19685 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AV939_19810 SM00354 helix_turn _helix lactose operon repressor AV939_19825 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV939_19835 SM01144 AV939_19835 AV939_19860 SM00382 ATPases associated with a variety of cellular activities AV939_19900 SM00470 ParB-like nuclease domain AV939_19915 SM01228 AV939_19915