AV940_00005 SM00382 ATPases associated with a variety of cellular activities AV940_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AV940_00010 SM00480 DNA polymerase III beta subunit AV940_00020 SM00387 Histidine kinase-like ATPases AV940_00020 SM00433 TopoisomeraseII AV940_00035 SM00836 DALR anticodon binding domain AV940_00070 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AV940_00070 SM00474 3'-5' exonuclease AV940_00070 SM00475 5'-3' exonuclease AV940_00070 SM00482 DNA polymerase A domain AV940_00105 SM00257 Lysin motif AV940_00195 SM00481 DNA polymerase alpha chain like domain AV940_00295 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AV940_00295 SM01232 AV940_00295 AV940_00325 SM00052 Putative diguanylate phosphodiesterase AV940_00325 SM00267 diguanylate cyclase AV940_00335 SM00829 Enoylreductase AV940_00340 SM00450 Rhodanese Homology Domain AV940_00375 SM00052 Putative diguanylate phosphodiesterase AV940_00375 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV940_00375 SM00267 diguanylate cyclase AV940_00490 SM00989 AV940_00490 AV940_00500 SM00342 helix_turn_helix, arabinose operon control protein AV940_00575 SM00346 helix_turn_helix isocitrate lyase regulation AV940_00585 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AV940_00605 SM00028 Tetratricopeptide repeats AV940_00610 SM00387 Histidine kinase-like ATPases AV940_00610 SM00388 His Kinase A (phosphoacceptor) domain AV940_00610 SM00448 cheY-homologous receiver domain AV940_00640 SM00382 ATPases associated with a variety of cellular activities AV940_00665 SM00849 Metallo-beta-lactamase superfamily AV940_00695 SM00876 Biotin and Thiamin Synthesis associated domain AV940_00760 SM00729 Elongator protein 3, MiaB family, Radical SAM AV940_00820 SM00267 diguanylate cyclase AV940_00830 SM00072 Guanylate kinase homologues. AV940_00835 SM01409 AV940_00835 AV940_00840 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV940_00840 SM00954 Region found in RelA / SpoT proteins AV940_00855 SM00487 DEAD-like helicases superfamily AV940_00855 SM00490 helicase superfamily c-terminal domain AV940_00890 SM00382 ATPases associated with a variety of cellular activities AV940_00925 SM00028 Tetratricopeptide repeats AV940_00925 SM00267 diguanylate cyclase AV940_00955 SM00271 DnaJ molecular chaperone homology domain AV940_00990 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_01010 SM00052 Putative diguanylate phosphodiesterase AV940_01010 SM00267 diguanylate cyclase AV940_01030 SM00341 Helicase and RNase D C-terminal AV940_01030 SM00487 DEAD-like helicases superfamily AV940_01030 SM00490 helicase superfamily c-terminal domain AV940_01030 SM00956 AV940_01030 AV940_01040 SM00924 MgtE intracellular N domain AV940_01050 SM00267 diguanylate cyclase AV940_01050 SM00448 cheY-homologous receiver domain AV940_01060 SM00971 Serine acetyltransferase, N-terminal AV940_01100 SM00014 Acid phosphatase homologues AV940_01140 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV940_01175 SM00354 helix_turn _helix lactose operon repressor AV940_01240 SM00862 Transcriptional regulatory protein, C terminal AV940_01250 SM00823 Phosphopantetheine attachment site AV940_01260 SM00823 Phosphopantetheine attachment site AV940_01270 SM00382 ATPases associated with a variety of cellular activities AV940_01285 SM00448 cheY-homologous receiver domain AV940_01290 SM00073 Histidine Phosphotransfer domain AV940_01290 SM00387 Histidine kinase-like ATPases AV940_01290 SM00388 His Kinase A (phosphoacceptor) domain AV940_01290 SM00448 cheY-homologous receiver domain AV940_01300 SM01130 AV940_01300 AV940_01350 SM00420 helix_turn_helix, Deoxyribose operon repressor AV940_01350 SM01134 AV940_01350 AV940_01385 SM00965 Secretin and TonB N terminus short domain AV940_01465 SM00316 Ribosomal protein S1-like RNA-binding domain AV940_01485 SM00634 Bacterial Ig-like domain (group 1) AV940_01500 SM00342 helix_turn_helix, arabinose operon control protein AV940_01505 SM01038 Beta galactosidase small chain AV940_01510 SM00448 cheY-homologous receiver domain AV940_01510 SM00862 Transcriptional regulatory protein, C terminal AV940_01515 SM00387 Histidine kinase-like ATPases AV940_01540 SM00478 endonuclease III AV940_01540 SM00525 AV940_01540 AV940_01580 SM00448 cheY-homologous receiver domain AV940_01580 SM00862 Transcriptional regulatory protein, C terminal AV940_01590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_01595 SM00448 cheY-homologous receiver domain AV940_01600 SM00073 Histidine Phosphotransfer domain AV940_01600 SM00260 Two component signalling adaptor domain AV940_01600 SM00387 Histidine kinase-like ATPases AV940_01600 SM01231 AV940_01600 AV940_01605 SM00260 Two component signalling adaptor domain AV940_01610 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV940_01610 SM00091 PAS domain AV940_01610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_01615 SM00138 Methyltransferase, chemotaxis proteins AV940_01625 SM00448 cheY-homologous receiver domain AV940_01650 SM00354 helix_turn _helix lactose operon repressor AV940_01675 SM00342 helix_turn_helix, arabinose operon control protein AV940_01675 SM00387 Histidine kinase-like ATPases AV940_01675 SM00388 His Kinase A (phosphoacceptor) domain AV940_01675 SM00448 cheY-homologous receiver domain AV940_01700 SM00354 helix_turn _helix lactose operon repressor AV940_01770 SM00855 Phosphoglycerate mutase family AV940_01780 SM00671 Sel1-like repeats. AV940_01785 SM00382 ATPases associated with a variety of cellular activities AV940_01790 SM01403 AV940_01790 AV940_01810 SM01382 AV940_01810 AV940_01810 SM01383 AV940_01810 AV940_01825 SM00322 K homology RNA-binding domain AV940_01875 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_01875 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_01900 SM00487 DEAD-like helicases superfamily AV940_01900 SM00490 helicase superfamily c-terminal domain AV940_01930 SM00342 helix_turn_helix, arabinose operon control protein AV940_01945 SM00938 Nitrogen regulatory protein P-II AV940_01965 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AV940_02000 SM00073 Histidine Phosphotransfer domain AV940_02000 SM00387 Histidine kinase-like ATPases AV940_02000 SM00388 His Kinase A (phosphoacceptor) domain AV940_02000 SM00448 cheY-homologous receiver domain AV940_02005 SM00434 DNA Topoisomerase IV AV940_02015 SM00052 Putative diguanylate phosphodiesterase AV940_02015 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV940_02015 SM00267 diguanylate cyclase AV940_02020 SM01150 AV940_02020 AV940_02095 SM00965 Secretin and TonB N terminus short domain AV940_02115 SM00842 Cell division protein FtsA AV940_02125 SM00919 Malic enzyme, NAD binding domain AV940_02125 SM01274 AV940_02125 AV940_02160 SM00028 Tetratricopeptide repeats AV940_02170 SM00052 Putative diguanylate phosphodiesterase AV940_02200 SM00859 Semialdehyde dehydrogenase, NAD binding domain AV940_02205 SM00851 MGS-like domain AV940_02230 SM00448 cheY-homologous receiver domain AV940_02230 SM00862 Transcriptional regulatory protein, C terminal AV940_02235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_02235 SM00387 Histidine kinase-like ATPases AV940_02235 SM00388 His Kinase A (phosphoacceptor) domain AV940_02265 SM00450 Rhodanese Homology Domain AV940_02310 SM00479 AV940_02310 AV940_02325 SM00028 Tetratricopeptide repeats AV940_02380 SM00267 diguanylate cyclase AV940_02385 SM01004 Delta-aminolevulinic acid dehydratase AV940_02395 SM00487 DEAD-like helicases superfamily AV940_02395 SM00490 helicase superfamily c-terminal domain AV940_02405 SM00357 Cold shock protein domain AV940_02405 SM00382 ATPases associated with a variety of cellular activities AV940_02405 SM00959 Rho termination factor, N-terminal domain AV940_02415 SM00387 Histidine kinase-like ATPases AV940_02415 SM00388 His Kinase A (phosphoacceptor) domain AV940_02415 SM00448 cheY-homologous receiver domain AV940_02425 SM01001 AIR carboxylase AV940_02505 SM00788 Adenylosuccinate synthetase AV940_02560 SM01005 Alanine racemase, C-terminal domain AV940_02585 SM00062 Bacterial periplasmic substrate-binding proteins AV940_02590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_02590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_02615 SM00360 RNA recognition motif AV940_02625 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV940_02690 SM00852 Probable molybdopterin binding domain AV940_02720 SM00382 ATPases associated with a variety of cellular activities AV940_02725 SM00729 Elongator protein 3, MiaB family, Radical SAM AV940_02750 SM00855 Phosphoglycerate mutase family AV940_02765 SM00829 Enoylreductase AV940_02915 SM00257 Lysin motif AV940_02960 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_02960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_02960 SM01049 AV940_02960 AV940_02985 SM00448 cheY-homologous receiver domain AV940_02985 SM00862 Transcriptional regulatory protein, C terminal AV940_02990 SM00388 His Kinase A (phosphoacceptor) domain AV940_02995 SM00287 Bacterial SH3 domain homologues AV940_03000 SM01118 AV940_03000 AV940_03010 SM00927 DNA mismatch repair enzyme MutH AV940_03020 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV940_03040 SM00448 cheY-homologous receiver domain AV940_03045 SM00267 diguanylate cyclase AV940_03050 SM00387 Histidine kinase-like ATPases AV940_03050 SM00388 His Kinase A (phosphoacceptor) domain AV940_03050 SM00448 cheY-homologous receiver domain AV940_03075 SM00487 DEAD-like helicases superfamily AV940_03075 SM00490 helicase superfamily c-terminal domain AV940_03080 SM00670 Large family of predicted nucleotide-binding domains AV940_03090 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV940_03090 SM00895 AV940_03090 AV940_03110 SM00829 Enoylreductase AV940_03115 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AV940_03135 SM00342 helix_turn_helix, arabinose operon control protein AV940_03175 SM00346 helix_turn_helix isocitrate lyase regulation AV940_03180 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV940_03180 SM00895 AV940_03180 AV940_03200 SM00028 Tetratricopeptide repeats AV940_03270 SM00635 Bacterial Ig-like domain 2 AV940_03295 SM00487 DEAD-like helicases superfamily AV940_03295 SM00490 helicase superfamily c-terminal domain AV940_03300 SM00028 Tetratricopeptide repeats AV940_03335 SM00387 Histidine kinase-like ATPases AV940_03335 SM00433 TopoisomeraseII AV940_03340 SM00052 Putative diguanylate phosphodiesterase AV940_03340 SM00091 PAS domain AV940_03340 SM00138 Methyltransferase, chemotaxis proteins AV940_03340 SM00267 diguanylate cyclase AV940_03345 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV940_03375 SM00841 Elongation factor P, C-terminal AV940_03375 SM01185 AV940_03375 AV940_03420 SM00014 Acid phosphatase homologues AV940_03430 SM01012 AV940_03430 AV940_03455 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AV940_03470 SM00091 PAS domain AV940_03470 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_03485 SM00382 ATPases associated with a variety of cellular activities AV940_03555 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AV940_03560 SM01007 Class II Aldolase and Adducin N-terminal domain AV940_03590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_03590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_03600 SM00400 zinc finger AV940_03600 SM00493 AV940_03600 AV940_03600 SM00766 DNA primase DnaG DnaB-binding AV940_03625 SM01207 AV940_03625 AV940_03630 SM00905 Dihydroneopterin aldolase AV940_03665 SM00530 Helix-turn-helix XRE-family like proteins AV940_03675 SM00387 Histidine kinase-like ATPases AV940_03680 SM00448 cheY-homologous receiver domain AV940_03680 SM00862 Transcriptional regulatory protein, C terminal AV940_03685 SM00387 Histidine kinase-like ATPases AV940_03685 SM00388 His Kinase A (phosphoacceptor) domain AV940_03695 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV940_03700 SM00710 Parallel beta-helix repeats AV940_03735 SM00028 Tetratricopeptide repeats AV940_03745 SM00448 cheY-homologous receiver domain AV940_03745 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV940_03750 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV940_03750 SM00091 PAS domain AV940_03750 SM00387 Histidine kinase-like ATPases AV940_03750 SM00388 His Kinase A (phosphoacceptor) domain AV940_03750 SM00448 cheY-homologous receiver domain AV940_03795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_03795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_03810 SM00650 Ribosomal RNA adenine dimethylases AV940_03830 SM00271 DnaJ molecular chaperone homology domain AV940_03875 SM00954 Region found in RelA / SpoT proteins AV940_03915 SM00965 Secretin and TonB N terminus short domain AV940_03920 SM00631 AV940_03920 AV940_03960 SM00342 helix_turn_helix, arabinose operon control protein AV940_03970 SM00116 Domain in cystathionine beta-synthase and other proteins. AV940_03970 SM00924 MgtE intracellular N domain AV940_04000 SM00382 ATPases associated with a variety of cellular activities AV940_04030 SM00382 ATPases associated with a variety of cellular activities AV940_04065 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV940_04070 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV940_04095 SM00342 helix_turn_helix, arabinose operon control protein AV940_04125 SM00052 Putative diguanylate phosphodiesterase AV940_04125 SM00267 diguanylate cyclase AV940_04130 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV940_04130 SM00387 Histidine kinase-like ATPases AV940_04130 SM00388 His Kinase A (phosphoacceptor) domain AV940_04130 SM00448 cheY-homologous receiver domain AV940_04140 SM00342 helix_turn_helix, arabinose operon control protein AV940_04160 SM01118 AV940_04160 AV940_04170 SM00861 Transketolase, pyrimidine binding domain AV940_04175 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV940_04220 SM00382 ATPases associated with a variety of cellular activities AV940_04270 SM00267 diguanylate cyclase AV940_04290 SM00342 helix_turn_helix, arabinose operon control protein AV940_04310 SM00342 helix_turn_helix, arabinose operon control protein AV940_04325 SM00758 AV940_04325 AV940_04325 SM01217 AV940_04325 AV940_04330 SM00347 helix_turn_helix multiple antibiotic resistance protein AV940_04340 SM01263 AV940_04340 AV940_04355 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV940_04355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_04370 SM00267 diguanylate cyclase AV940_04395 SM00382 ATPases associated with a variety of cellular activities AV940_04505 SM00448 cheY-homologous receiver domain AV940_04510 SM00091 PAS domain AV940_04530 SM00729 Elongator protein 3, MiaB family, Radical SAM AV940_04540 SM00487 DEAD-like helicases superfamily AV940_04540 SM00490 helicase superfamily c-terminal domain AV940_04550 SM00382 ATPases associated with a variety of cellular activities AV940_04575 SM01329 AV940_04575 AV940_04580 SM00917 LeuA allosteric (dimerisation) domain AV940_04600 SM01192 AV940_04600 AV940_04600 SM01193 AV940_04600 AV940_04610 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AV940_04610 SM00534 ATPase domain of DNA mismatch repair MUTS family AV940_04620 SM00382 ATPases associated with a variety of cellular activities AV940_04625 SM00382 ATPases associated with a variety of cellular activities AV940_04650 SM00382 ATPases associated with a variety of cellular activities AV940_04720 SM00382 ATPases associated with a variety of cellular activities AV940_04760 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV940_04765 SM01329 AV940_04765 AV940_04785 SM00267 diguanylate cyclase AV940_04875 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV940_04920 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV940_04930 SM00935 Outer membrane protein (OmpH-like) AV940_04955 SM00481 DNA polymerase alpha chain like domain AV940_04965 SM00977 TilS substrate C-terminal domain AV940_04970 SM00267 diguanylate cyclase AV940_04990 SM00062 Bacterial periplasmic substrate-binding proteins AV940_04995 SM01211 AV940_04995 AV940_05000 SM00463 Small MutS-related domain AV940_05005 SM00062 Bacterial periplasmic substrate-binding proteins AV940_05005 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AV940_05020 SM00901 AV940_05020 AV940_05040 SM00487 DEAD-like helicases superfamily AV940_05040 SM00490 helicase superfamily c-terminal domain AV940_05045 SM00882 Coenzyme A transferase AV940_05050 SM00882 Coenzyme A transferase AV940_05065 SM00387 Histidine kinase-like ATPases AV940_05110 SM00861 Transketolase, pyrimidine binding domain AV940_05125 SM00220 Serine/Threonine protein kinases, catalytic domain AV940_05150 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV940_05160 SM00945 ProQ/FINO family AV940_05165 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV940_05165 SM00245 tail specific protease AV940_05220 SM00981 AV940_05220 AV940_05230 SM00382 ATPases associated with a variety of cellular activities AV940_05370 SM00100 Cyclic nucleotide-monophosphate binding domain AV940_05370 SM00419 helix_turn_helix, cAMP Regulatory protein AV940_05395 SM00047 Lysozyme subfamily 2 AV940_05415 SM00450 Rhodanese Homology Domain AV940_05425 SM01144 AV940_05425 AV940_05470 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV940_05470 SM00465 GIY-YIG type nucleases (URI domain) AV940_05475 SM00421 helix_turn_helix, Lux Regulon AV940_05475 SM00448 cheY-homologous receiver domain AV940_05510 SM00448 cheY-homologous receiver domain AV940_05510 SM00862 Transcriptional regulatory protein, C terminal AV940_05515 SM00388 His Kinase A (phosphoacceptor) domain AV940_05570 SM00382 ATPases associated with a variety of cellular activities AV940_05580 SM00843 AV940_05580 AV940_05585 SM00344 helix_turn_helix ASNC type AV940_05590 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AV940_05590 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AV940_05595 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AV940_05600 SM00028 Tetratricopeptide repeats AV940_05615 SM00411 bacterial (prokaryotic) histone like domain AV940_05620 SM00316 Ribosomal protein S1-like RNA-binding domain AV940_05640 SM00434 DNA Topoisomerase IV AV940_05665 SM00387 Histidine kinase-like ATPases AV940_05665 SM00388 His Kinase A (phosphoacceptor) domain AV940_05670 SM00448 cheY-homologous receiver domain AV940_05670 SM00862 Transcriptional regulatory protein, C terminal AV940_05695 SM00422 helix_turn_helix, mercury resistance AV940_05710 SM01321 AV940_05710 AV940_05790 SM00382 ATPases associated with a variety of cellular activities AV940_05830 SM01130 AV940_05830 AV940_05915 SM00421 helix_turn_helix, Lux Regulon AV940_05915 SM00448 cheY-homologous receiver domain AV940_05945 SM00642 Alpha-amylase domain AV940_05950 SM00852 Probable molybdopterin binding domain AV940_05970 SM00382 ATPases associated with a variety of cellular activities AV940_06015 SM00563 Phosphate acyltransferases AV940_06050 SM00342 helix_turn_helix, arabinose operon control protein AV940_06080 SM00893 Electron transfer flavoprotein domain AV940_06085 SM00893 Electron transfer flavoprotein domain AV940_06095 SM00528 Domain in histone-like proteins of HNS family AV940_06115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_06115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_06135 SM00354 helix_turn _helix lactose operon repressor AV940_06145 SM00797 Allophanate hydrolase subunit 2 AV940_06150 SM00796 Allophanate hydrolase subunit 1 AV940_06200 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV940_06205 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV940_06285 SM00382 ATPases associated with a variety of cellular activities AV940_06295 SM00316 Ribosomal protein S1-like RNA-binding domain AV940_06295 SM00322 K homology RNA-binding domain AV940_06300 SM00507 HNH nucleases AV940_06340 SM00046 Diacylglycerol kinase catalytic domain (presumed) AV940_06340 SM00195 Dual specificity phosphatase, catalytic domain AV940_06350 SM00052 Putative diguanylate phosphodiesterase AV940_06350 SM00267 diguanylate cyclase AV940_06350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_06380 SM00382 ATPases associated with a variety of cellular activities AV940_06390 SM01103 AV940_06390 AV940_06450 SM00936 Penicillin-binding protein 5, C-terminal domain AV940_06465 SM00729 Elongator protein 3, MiaB family, Radical SAM AV940_06475 SM00870 AV940_06475 AV940_06505 SM00731 SprT homologues. AV940_06535 SM00316 Ribosomal protein S1-like RNA-binding domain AV940_06540 SM00382 ATPases associated with a variety of cellular activities AV940_06540 SM01086 C-terminal, D2-small domain, of ClpB protein AV940_06550 SM00357 Cold shock protein domain AV940_06580 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AV940_06585 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AV940_06690 SM00710 Parallel beta-helix repeats AV940_06720 SM00354 helix_turn _helix lactose operon repressor AV940_06740 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV940_06805 SM00267 diguanylate cyclase AV940_06845 SM00825 Beta-ketoacyl synthase AV940_06855 SM00822 AV940_06855 AV940_06860 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AV940_06895 SM00363 S4 RNA-binding domain AV940_06900 SM00316 Ribosomal protein S1-like RNA-binding domain AV940_06905 SM00587 ZnF_C4 abd HLH domain containing kinases domain AV940_06975 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AV940_06975 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AV940_06975 SM00493 AV940_06975 AV940_06985 SM00634 Bacterial Ig-like domain (group 1) AV940_07000 SM00382 ATPases associated with a variety of cellular activities AV940_07005 SM00052 Putative diguanylate phosphodiesterase AV940_07020 SM00479 AV940_07020 AV940_07030 SM00829 Enoylreductase AV940_07035 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AV940_07050 SM00382 ATPases associated with a variety of cellular activities AV940_07050 SM00487 DEAD-like helicases superfamily AV940_07050 SM00490 helicase superfamily c-terminal domain AV940_07050 SM00847 Helicase associated domain (HA2) Add an annotation AV940_07060 SM00342 helix_turn_helix, arabinose operon control protein AV940_07085 SM00116 Domain in cystathionine beta-synthase and other proteins. AV940_07090 SM00387 Histidine kinase-like ATPases AV940_07090 SM00388 His Kinase A (phosphoacceptor) domain AV940_07090 SM00448 cheY-homologous receiver domain AV940_07095 SM00479 AV940_07095 AV940_07105 SM00062 Bacterial periplasmic substrate-binding proteins AV940_07105 SM00267 diguanylate cyclase AV940_07115 SM00422 helix_turn_helix, mercury resistance AV940_07135 SM00878 Biotin carboxylase C-terminal domain AV940_07145 SM01321 AV940_07145 AV940_07150 SM00052 Putative diguanylate phosphodiesterase AV940_07150 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV940_07150 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV940_07150 SM00091 PAS domain AV940_07150 SM00267 diguanylate cyclase AV940_07240 SM00487 DEAD-like helicases superfamily AV940_07240 SM00490 helicase superfamily c-terminal domain AV940_07240 SM00982 AV940_07240 AV940_07240 SM01058 CarD-like/TRCF domain AV940_07280 SM00411 bacterial (prokaryotic) histone like domain AV940_07285 SM00873 B3/4 domain AV940_07285 SM00874 tRNA synthetase B5 domain AV940_07285 SM00896 Ferredoxin-fold anticodon binding domain AV940_07305 SM00710 Parallel beta-helix repeats AV940_07365 SM00052 Putative diguanylate phosphodiesterase AV940_07365 SM00267 diguanylate cyclase AV940_07435 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AV940_07525 SM00387 Histidine kinase-like ATPases AV940_07525 SM00388 His Kinase A (phosphoacceptor) domain AV940_07525 SM00448 cheY-homologous receiver domain AV940_07530 SM00267 diguanylate cyclase AV940_07530 SM00448 cheY-homologous receiver domain AV940_07535 SM00052 Putative diguanylate phosphodiesterase AV940_07535 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV940_07535 SM00091 PAS domain AV940_07535 SM00267 diguanylate cyclase AV940_07535 SM00448 cheY-homologous receiver domain AV940_07570 SM01092 CO dehydrogenase flavoprotein C-terminal domain AV940_07575 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV940_07605 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV940_07605 SM00091 PAS domain AV940_07605 SM00267 diguanylate cyclase AV940_07625 SM00028 Tetratricopeptide repeats AV940_07625 SM00267 diguanylate cyclase AV940_07705 SM00052 Putative diguanylate phosphodiesterase AV940_07705 SM00267 diguanylate cyclase AV940_07735 SM00460 Transglutaminase/protease-like homologues AV940_07745 SM00331 Sigma factor PP2C-like phosphatases AV940_07745 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AV940_07750 SM01116 AV940_07750 AV940_07755 SM00838 Elongation factor G C-terminus AV940_07755 SM00889 Elongation factor G, domain IV AV940_07805 SM00937 AV940_07805 AV940_07830 SM01400 AV940_07830 AV940_07835 SM00052 Putative diguanylate phosphodiesterase AV940_07835 SM00267 diguanylate cyclase AV940_07845 SM00829 Enoylreductase AV940_07885 SM00903 Flavin reductase like domain AV940_07905 SM00729 Elongator protein 3, MiaB family, Radical SAM AV940_07920 SM00116 Domain in cystathionine beta-synthase and other proteins. AV940_07920 SM01091 Transporter associated domain AV940_07960 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_07970 SM00851 MGS-like domain AV940_07970 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AV940_07975 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AV940_07995 SM00052 Putative diguanylate phosphodiesterase AV940_07995 SM00091 PAS domain AV940_08005 SM00271 DnaJ molecular chaperone homology domain AV940_08020 SM00387 Histidine kinase-like ATPases AV940_08020 SM00388 His Kinase A (phosphoacceptor) domain AV940_08020 SM00448 cheY-homologous receiver domain AV940_08025 SM00421 helix_turn_helix, Lux Regulon AV940_08025 SM00448 cheY-homologous receiver domain AV940_08090 SM01266 AV940_08090 AV940_08105 SM00363 S4 RNA-binding domain AV940_08125 SM00481 DNA polymerase alpha chain like domain AV940_08175 SM00448 cheY-homologous receiver domain AV940_08175 SM00862 Transcriptional regulatory protein, C terminal AV940_08180 SM00387 Histidine kinase-like ATPases AV940_08190 SM00905 Dihydroneopterin aldolase AV940_08205 SM00382 ATPases associated with a variety of cellular activities AV940_08220 SM01321 AV940_08220 AV940_08245 SM00028 Tetratricopeptide repeats AV940_08245 SM00448 cheY-homologous receiver domain AV940_08255 SM00729 Elongator protein 3, MiaB family, Radical SAM AV940_08260 SM00382 ATPases associated with a variety of cellular activities AV940_08280 SM00382 ATPases associated with a variety of cellular activities AV940_08290 SM00226 Low molecular weight phosphatase family AV940_08315 SM00729 Elongator protein 3, MiaB family, Radical SAM AV940_08315 SM00876 Biotin and Thiamin Synthesis associated domain AV940_08380 SM00267 diguanylate cyclase AV940_08420 SM00116 Domain in cystathionine beta-synthase and other proteins. AV940_08425 SM00829 Enoylreductase AV940_08430 SM00829 Enoylreductase AV940_08455 SM00859 Semialdehyde dehydrogenase, NAD binding domain AV940_08485 SM00028 Tetratricopeptide repeats AV940_08485 SM00387 Histidine kinase-like ATPases AV940_08485 SM00388 His Kinase A (phosphoacceptor) domain AV940_08485 SM00448 cheY-homologous receiver domain AV940_08535 SM00267 diguanylate cyclase AV940_08570 SM00028 Tetratricopeptide repeats AV940_08605 SM00382 ATPases associated with a variety of cellular activities AV940_08610 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV940_08635 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV940_08640 SM00382 ATPases associated with a variety of cellular activities AV940_08640 SM00448 cheY-homologous receiver domain AV940_08650 SM00387 Histidine kinase-like ATPases AV940_08650 SM00388 His Kinase A (phosphoacceptor) domain AV940_08660 SM00052 Putative diguanylate phosphodiesterase AV940_08660 SM00267 diguanylate cyclase AV940_08670 SM00331 Sigma factor PP2C-like phosphatases AV940_08670 SM00448 cheY-homologous receiver domain AV940_08685 SM00448 cheY-homologous receiver domain AV940_08690 SM00830 Chorismate mutase type II AV940_08695 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_08695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_08700 SM00830 Chorismate mutase type II AV940_08760 SM00382 ATPases associated with a variety of cellular activities AV940_08805 SM00382 ATPases associated with a variety of cellular activities AV940_08805 SM00962 SRP54-type protein, GTPase domain AV940_08805 SM00963 SRP54-type protein, helical bundle domain AV940_08815 SM01091 Transporter associated domain AV940_08825 SM00855 Phosphoglycerate mutase family AV940_08835 SM00052 Putative diguanylate phosphodiesterase AV940_08835 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV940_08835 SM00091 PAS domain AV940_08835 SM00267 diguanylate cyclase AV940_08870 SM00327 von Willebrand factor (vWF) type A domain AV940_08875 SM00028 Tetratricopeptide repeats AV940_08900 SM00267 diguanylate cyclase AV940_08990 SM00487 DEAD-like helicases superfamily AV940_08990 SM00490 helicase superfamily c-terminal domain AV940_09025 SM00900 AV940_09025 AV940_09035 SM00478 endonuclease III AV940_09035 SM00525 AV940_09035 AV940_09075 SM00028 Tetratricopeptide repeats AV940_09080 SM00267 diguanylate cyclase AV940_09090 SM00357 Cold shock protein domain AV940_09110 SM00479 AV940_09110 AV940_09125 SM00965 Secretin and TonB N terminus short domain AV940_09155 SM00763 PrkA AAA domain AV940_09190 SM00463 Small MutS-related domain AV940_09195 SM00387 Histidine kinase-like ATPases AV940_09200 SM00382 ATPases associated with a variety of cellular activities AV940_09200 SM00448 cheY-homologous receiver domain AV940_09215 SM00382 ATPases associated with a variety of cellular activities AV940_09225 SM01321 AV940_09225 AV940_09265 SM00937 AV940_09265 AV940_09300 SM00052 Putative diguanylate phosphodiesterase AV940_09300 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV940_09300 SM00091 PAS domain AV940_09300 SM00267 diguanylate cyclase AV940_09305 SM00836 DALR anticodon binding domain AV940_09305 SM01016 Arginyl tRNA synthetase N terminal dom AV940_09375 SM00028 Tetratricopeptide repeats AV940_09405 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV940_09410 SM00028 Tetratricopeptide repeats AV940_09425 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV940_09460 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AV940_09465 SM00344 helix_turn_helix ASNC type AV940_09480 SM00091 PAS domain AV940_09480 SM00382 ATPases associated with a variety of cellular activities AV940_09505 SM00382 ATPases associated with a variety of cellular activities AV940_09525 SM00382 ATPases associated with a variety of cellular activities AV940_09530 SM00382 ATPases associated with a variety of cellular activities AV940_09570 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AV940_09605 SM00947 Carbonic anhydrase AV940_09625 SM01018 B12 binding domain AV940_09645 SM00260 Two component signalling adaptor domain AV940_09650 SM00260 Two component signalling adaptor domain AV940_09660 SM00448 cheY-homologous receiver domain AV940_09665 SM00073 Histidine Phosphotransfer domain AV940_09665 SM00260 Two component signalling adaptor domain AV940_09665 SM00387 Histidine kinase-like ATPases AV940_09665 SM01231 AV940_09665 AV940_09675 SM00448 cheY-homologous receiver domain AV940_09690 SM00382 ATPases associated with a variety of cellular activities AV940_09690 SM00962 SRP54-type protein, GTPase domain AV940_09750 SM00382 ATPases associated with a variety of cellular activities AV940_09775 SM00382 ATPases associated with a variety of cellular activities AV940_09775 SM00448 cheY-homologous receiver domain AV940_09780 SM00387 Histidine kinase-like ATPases AV940_09780 SM00388 His Kinase A (phosphoacceptor) domain AV940_09785 SM00382 ATPases associated with a variety of cellular activities AV940_09815 SM00858 AV940_09815 AV940_09835 SM00822 AV940_09835 AV940_09950 SM00047 Lysozyme subfamily 2 AV940_09995 SM00138 Methyltransferase, chemotaxis proteins AV940_10000 SM00260 Two component signalling adaptor domain AV940_10000 SM00448 cheY-homologous receiver domain AV940_10005 SM00858 AV940_10005 AV940_10035 SM00052 Putative diguanylate phosphodiesterase AV940_10040 SM00421 helix_turn_helix, Lux Regulon AV940_10050 SM00382 ATPases associated with a variety of cellular activities AV940_10075 SM00530 Helix-turn-helix XRE-family like proteins AV940_10140 SM00363 S4 RNA-binding domain AV940_10145 SM00054 EF-hand, calcium binding motif AV940_10150 SM00450 Rhodanese Homology Domain AV940_10160 SM00028 Tetratricopeptide repeats AV940_10160 SM00448 cheY-homologous receiver domain AV940_10175 SM00448 cheY-homologous receiver domain AV940_10175 SM00850 LytTr DNA-binding domain AV940_10195 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AV940_10320 SM00354 helix_turn _helix lactose operon repressor AV940_10325 SM00642 Alpha-amylase domain AV940_10335 SM00642 Alpha-amylase domain AV940_10340 SM00642 Alpha-amylase domain AV940_10380 SM00881 CoA binding domain AV940_10395 SM00861 Transketolase, pyrimidine binding domain AV940_10465 SM00729 Elongator protein 3, MiaB family, Radical SAM AV940_10490 SM00382 ATPases associated with a variety of cellular activities AV940_10505 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AV940_10505 SM00292 breast cancer carboxy-terminal domain AV940_10505 SM00532 Ligase N family AV940_10510 SM00771 ZipA, C-terminal domain (FtsZ-binding) AV940_10530 SM00028 Tetratricopeptide repeats AV940_10585 SM00028 Tetratricopeptide repeats AV940_10600 SM00347 helix_turn_helix multiple antibiotic resistance protein AV940_10685 SM00458 Ricin-type beta-trefoil AV940_10770 SM00052 Putative diguanylate phosphodiesterase AV940_10770 SM00267 diguanylate cyclase AV940_10770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_10785 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV940_10785 SM00267 diguanylate cyclase AV940_10805 SM00382 ATPases associated with a variety of cellular activities AV940_10845 SM00729 Elongator protein 3, MiaB family, Radical SAM AV940_10895 SM00028 Tetratricopeptide repeats AV940_10895 SM00448 cheY-homologous receiver domain AV940_10900 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV940_10920 SM00267 diguanylate cyclase AV940_10935 SM01387 AV940_10935 AV940_10955 SM00316 Ribosomal protein S1-like RNA-binding domain AV940_10965 SM00448 cheY-homologous receiver domain AV940_10965 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV940_10970 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV940_10970 SM00091 PAS domain AV940_10970 SM00387 Histidine kinase-like ATPases AV940_10970 SM00388 His Kinase A (phosphoacceptor) domain AV940_10970 SM00448 cheY-homologous receiver domain AV940_11180 SM00387 Histidine kinase-like ATPases AV940_11180 SM00388 His Kinase A (phosphoacceptor) domain AV940_11180 SM00448 cheY-homologous receiver domain AV940_11250 SM00052 Putative diguanylate phosphodiesterase AV940_11250 SM00267 diguanylate cyclase AV940_11255 SM00849 Metallo-beta-lactamase superfamily AV940_11295 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AV940_11300 SM00450 Rhodanese Homology Domain AV940_11315 SM00382 ATPases associated with a variety of cellular activities AV940_11315 SM00448 cheY-homologous receiver domain AV940_11325 SM00387 Histidine kinase-like ATPases AV940_11325 SM00388 His Kinase A (phosphoacceptor) domain AV940_11330 SM00448 cheY-homologous receiver domain AV940_11335 SM00387 Histidine kinase-like ATPases AV940_11335 SM00388 His Kinase A (phosphoacceptor) domain AV940_11335 SM00448 cheY-homologous receiver domain AV940_11400 SM00631 AV940_11400 AV940_11405 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV940_11420 SM01350 AV940_11420 AV940_11425 SM00642 Alpha-amylase domain AV940_11430 SM00642 Alpha-amylase domain AV940_11440 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AV940_11505 SM00749 bacterial OsmY and nodulation domain AV940_11530 SM00387 Histidine kinase-like ATPases AV940_11530 SM00388 His Kinase A (phosphoacceptor) domain AV940_11535 SM00448 cheY-homologous receiver domain AV940_11535 SM00862 Transcriptional regulatory protein, C terminal AV940_11570 SM00822 AV940_11570 AV940_11595 SM00354 helix_turn _helix lactose operon repressor AV940_11600 SM00858 AV940_11600 AV940_11635 SM00710 Parallel beta-helix repeats AV940_11645 SM00387 Histidine kinase-like ATPases AV940_11645 SM00388 His Kinase A (phosphoacceptor) domain AV940_11645 SM00448 cheY-homologous receiver domain AV940_11690 SM00354 helix_turn _helix lactose operon repressor AV940_11695 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AV940_11715 SM00052 Putative diguanylate phosphodiesterase AV940_11715 SM00267 diguanylate cyclase AV940_11760 SM00267 diguanylate cyclase AV940_11770 SM00448 cheY-homologous receiver domain AV940_11770 SM00862 Transcriptional regulatory protein, C terminal AV940_11775 SM00387 Histidine kinase-like ATPases AV940_11775 SM00388 His Kinase A (phosphoacceptor) domain AV940_11835 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_11835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_11845 SM01060 AV940_11845 AV940_11855 SM00244 prohibitin homologues AV940_11870 SM00100 Cyclic nucleotide-monophosphate binding domain AV940_11920 SM00849 Metallo-beta-lactamase superfamily AV940_11925 SM00257 Lysin motif AV940_11960 SM00354 helix_turn _helix lactose operon repressor AV940_12010 SM00840 AV940_12010 AV940_12025 SM00098 Alkaline phosphatase homologues AV940_12030 SM00098 Alkaline phosphatase homologues AV940_12045 SM00244 prohibitin homologues AV940_12050 SM01321 AV940_12050 AV940_12065 SM00382 ATPases associated with a variety of cellular activities AV940_12070 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AV940_12075 SM01092 CO dehydrogenase flavoprotein C-terminal domain AV940_12090 SM00829 Enoylreductase AV940_12180 SM00859 Semialdehyde dehydrogenase, NAD binding domain AV940_12190 SM01007 Class II Aldolase and Adducin N-terminal domain AV940_12195 SM00100 Cyclic nucleotide-monophosphate binding domain AV940_12195 SM00419 helix_turn_helix, cAMP Regulatory protein AV940_12200 SM00825 Beta-ketoacyl synthase AV940_12205 SM00267 diguanylate cyclase AV940_12280 SM00420 helix_turn_helix, Deoxyribose operon repressor AV940_12355 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV940_12395 SM00341 Helicase and RNase D C-terminal AV940_12395 SM00474 3'-5' exonuclease AV940_12425 SM00487 DEAD-like helicases superfamily AV940_12425 SM00488 AV940_12425 AV940_12425 SM00491 AV940_12425 AV940_12430 SM00642 Alpha-amylase domain AV940_12535 SM01236 AV940_12535 AV940_12580 SM00387 Histidine kinase-like ATPases AV940_12580 SM00388 His Kinase A (phosphoacceptor) domain AV940_12585 SM00448 cheY-homologous receiver domain AV940_12585 SM00862 Transcriptional regulatory protein, C terminal AV940_12590 SM00849 Metallo-beta-lactamase superfamily AV940_12615 SM00387 Histidine kinase-like ATPases AV940_12620 SM00493 AV940_12620 AV940_12645 SM00382 ATPases associated with a variety of cellular activities AV940_12670 SM00862 Transcriptional regulatory protein, C terminal AV940_12685 SM00091 PAS domain AV940_12685 SM00267 diguanylate cyclase AV940_12690 SM00054 EF-hand, calcium binding motif AV940_12735 SM00028 Tetratricopeptide repeats AV940_12740 SM00382 ATPases associated with a variety of cellular activities AV940_12740 SM01086 C-terminal, D2-small domain, of ClpB protein AV940_12750 SM00363 S4 RNA-binding domain AV940_12820 SM00861 Transketolase, pyrimidine binding domain AV940_12875 SM00382 ATPases associated with a variety of cellular activities AV940_12885 SM00382 ATPases associated with a variety of cellular activities AV940_12920 SM00358 Double-stranded RNA binding motif AV940_12920 SM00535 Ribonuclease III family AV940_12930 SM00838 Elongation factor G C-terminus AV940_12985 SM00938 Nitrogen regulatory protein P-II AV940_13070 SM00904 Riboflavin kinase AV940_13115 SM00563 Phosphate acyltransferases AV940_13130 SM00411 bacterial (prokaryotic) histone like domain AV940_13135 SM00382 ATPases associated with a variety of cellular activities AV940_13135 SM00464 Found in ATP-dependent protease La (LON) AV940_13140 SM00382 ATPases associated with a variety of cellular activities AV940_13140 SM00994 ClpX C4-type zinc finger AV940_13140 SM01086 C-terminal, D2-small domain, of ClpB protein AV940_13195 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_13210 SM00116 Domain in cystathionine beta-synthase and other proteins. AV940_13210 SM01240 AV940_13210 AV940_13225 SM00382 ATPases associated with a variety of cellular activities AV940_13230 SM00564 beta-propeller repeat AV940_13250 SM00530 Helix-turn-helix XRE-family like proteins AV940_13255 SM00028 Tetratricopeptide repeats AV940_13255 SM00257 Lysin motif AV940_13265 SM00562 AV940_13265 AV940_13295 SM00382 ATPases associated with a variety of cellular activities AV940_13335 SM00850 LytTr DNA-binding domain AV940_13340 SM00052 Putative diguanylate phosphodiesterase AV940_13340 SM00267 diguanylate cyclase AV940_13340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_13365 SM01323 AV940_13365 AV940_13435 SM00098 Alkaline phosphatase homologues AV940_13440 SM00260 Two component signalling adaptor domain AV940_13440 SM00448 cheY-homologous receiver domain AV940_13485 SM00028 Tetratricopeptide repeats AV940_13610 SM00382 ATPases associated with a variety of cellular activities AV940_13680 SM00052 Putative diguanylate phosphodiesterase AV940_13680 SM00267 diguanylate cyclase AV940_13695 SM00354 helix_turn _helix lactose operon repressor AV940_13730 SM00460 Transglutaminase/protease-like homologues AV940_13745 SM00967 RNA 2'-O ribose methyltransferase substrate binding AV940_13770 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AV940_13775 SM00342 helix_turn_helix, arabinose operon control protein AV940_13780 SM00220 Serine/Threonine protein kinases, catalytic domain AV940_13830 SM00822 AV940_13830 AV940_13870 SM00422 helix_turn_helix, mercury resistance AV940_13895 SM00060 Fibronectin type 3 domain AV940_13895 SM00631 AV940_13895 AV940_14070 SM00642 Alpha-amylase domain AV940_14300 SM00422 helix_turn_helix, mercury resistance AV940_14370 SM00382 ATPases associated with a variety of cellular activities AV940_14405 SM00347 helix_turn_helix multiple antibiotic resistance protein AV940_14425 SM00487 DEAD-like helicases superfamily AV940_14425 SM00490 helicase superfamily c-terminal domain AV940_14430 SM01322 AV940_14430 AV940_14435 SM00347 helix_turn_helix multiple antibiotic resistance protein AV940_14460 SM00271 DnaJ molecular chaperone homology domain AV940_14480 SM00382 ATPases associated with a variety of cellular activities AV940_14505 SM00862 Transcriptional regulatory protein, C terminal AV940_14520 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV940_14545 SM00245 tail specific protease AV940_14575 SM00090 RIO-like kinase AV940_14595 SM00342 helix_turn_helix, arabinose operon control protein AV940_14610 SM00487 DEAD-like helicases superfamily AV940_14610 SM00490 helicase superfamily c-terminal domain AV940_14625 SM00028 Tetratricopeptide repeats AV940_14635 SM00327 von Willebrand factor (vWF) type A domain AV940_14775 SM00354 helix_turn _helix lactose operon repressor AV940_14785 SM00640 Glycosyl hydrolases family 32 AV940_14835 SM01011 Aminopeptidase P, N-terminal domain AV940_14860 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV940_14860 SM00387 Histidine kinase-like ATPases AV940_14860 SM00388 His Kinase A (phosphoacceptor) domain AV940_14860 SM00448 cheY-homologous receiver domain AV940_14950 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV940_14950 SM00895 AV940_14950 AV940_14960 SM00644 AV940_14960 AV940_15015 SM00957 SecA DEAD-like domain AV940_15015 SM00958 SecA preprotein cross-linking domain AV940_15030 SM00864 Tubulin/FtsZ family, GTPase domain AV940_15030 SM00865 Tubulin/FtsZ family, C-terminal domain AV940_15035 SM00842 Cell division protein FtsA AV940_15145 SM00028 Tetratricopeptide repeats AV940_15145 SM00267 diguanylate cyclase AV940_15155 SM00382 ATPases associated with a variety of cellular activities AV940_15155 SM00448 cheY-homologous receiver domain AV940_15160 SM00387 Histidine kinase-like ATPases AV940_15200 SM00732 Likely ribonuclease with RNase H fold. AV940_15210 SM00382 ATPases associated with a variety of cellular activities AV940_15240 SM01321 AV940_15240 AV940_15290 SM00986 Uracil DNA glycosylase superfamily AV940_15290 SM00987 UreE urease accessory protein, C-terminal domain AV940_15315 SM00829 Enoylreductase AV940_15320 SM00421 helix_turn_helix, Lux Regulon AV940_15320 SM00448 cheY-homologous receiver domain AV940_15345 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AV940_15350 SM00226 Low molecular weight phosphatase family AV940_15365 SM00448 cheY-homologous receiver domain AV940_15375 SM00448 cheY-homologous receiver domain AV940_15375 SM00862 Transcriptional regulatory protein, C terminal AV940_15380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_15380 SM00387 Histidine kinase-like ATPases AV940_15380 SM00388 His Kinase A (phosphoacceptor) domain AV940_15490 SM00421 helix_turn_helix, Lux Regulon AV940_15490 SM00448 cheY-homologous receiver domain AV940_15500 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV940_15500 SM00895 AV940_15500 AV940_15525 SM00267 diguanylate cyclase AV940_15525 SM00448 cheY-homologous receiver domain AV940_15570 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV940_15570 SM00091 PAS domain AV940_15570 SM00387 Histidine kinase-like ATPases AV940_15570 SM00388 His Kinase A (phosphoacceptor) domain AV940_15570 SM00448 cheY-homologous receiver domain AV940_15590 SM00530 Helix-turn-helix XRE-family like proteins AV940_15595 SM00656 AV940_15595 AV940_15610 SM00346 helix_turn_helix isocitrate lyase regulation AV940_15615 SM00458 Ricin-type beta-trefoil AV940_15615 SM00656 AV940_15615 AV940_15645 SM00450 Rhodanese Homology Domain AV940_15780 SM00448 cheY-homologous receiver domain AV940_15795 SM01230 AV940_15795 AV940_15805 SM00091 PAS domain AV940_15805 SM00387 Histidine kinase-like ATPases AV940_15805 SM00388 His Kinase A (phosphoacceptor) domain AV940_15810 SM00382 ATPases associated with a variety of cellular activities AV940_15810 SM00448 cheY-homologous receiver domain AV940_15815 SM00073 Histidine Phosphotransfer domain AV940_15820 SM00563 Phosphate acyltransferases AV940_15835 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AV940_15835 SM00091 PAS domain AV940_15835 SM00267 diguanylate cyclase AV940_15845 SM00387 Histidine kinase-like ATPases AV940_15845 SM00388 His Kinase A (phosphoacceptor) domain AV940_15845 SM00448 cheY-homologous receiver domain AV940_15845 SM01358 AV940_15845 AV940_16010 SM00267 diguanylate cyclase AV940_16015 SM00996 S-adenosyl-L-homocysteine hydrolase AV940_16015 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AV940_16065 SM00028 Tetratricopeptide repeats AV940_16075 SM00387 Histidine kinase-like ATPases AV940_16080 SM01034 Sensors of blue-light using FAD AV940_16090 SM00382 ATPases associated with a variety of cellular activities AV940_16115 SM00267 diguanylate cyclase AV940_16120 SM00028 Tetratricopeptide repeats AV940_16120 SM00267 diguanylate cyclase AV940_16130 SM00564 beta-propeller repeat AV940_16135 SM00062 Bacterial periplasmic substrate-binding proteins AV940_16150 SM00382 ATPases associated with a variety of cellular activities AV940_16180 SM00729 Elongator protein 3, MiaB family, Radical SAM AV940_16205 SM00421 helix_turn_helix, Lux Regulon AV940_16205 SM00448 cheY-homologous receiver domain AV940_16210 SM00091 PAS domain AV940_16210 SM00387 Histidine kinase-like ATPases AV940_16210 SM00388 His Kinase A (phosphoacceptor) domain AV940_16210 SM00448 cheY-homologous receiver domain AV940_16215 SM00897 FIST N domain AV940_16215 SM01204 AV940_16215 AV940_16220 SM00900 AV940_16220 AV940_16230 SM00421 helix_turn_helix, Lux Regulon AV940_16230 SM00448 cheY-homologous receiver domain AV940_16245 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV940_16245 SM00895 AV940_16245 AV940_16280 SM00710 Parallel beta-helix repeats AV940_16295 SM00710 Parallel beta-helix repeats AV940_16300 SM00822 AV940_16300 AV940_16335 SM00240 Forkhead associated domain AV940_16340 SM00331 Sigma factor PP2C-like phosphatases AV940_16340 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AV940_16345 SM00240 Forkhead associated domain AV940_16355 SM00240 Forkhead associated domain AV940_16370 SM00220 Serine/Threonine protein kinases, catalytic domain AV940_16375 SM00331 Sigma factor PP2C-like phosphatases AV940_16375 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AV940_16380 SM00240 Forkhead associated domain AV940_16385 SM00240 Forkhead associated domain AV940_16385 SM00382 ATPases associated with a variety of cellular activities AV940_16390 SM00487 DEAD-like helicases superfamily AV940_16390 SM00490 helicase superfamily c-terminal domain AV940_16405 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV940_16405 SM00895 AV940_16405 AV940_16440 SM00267 diguanylate cyclase AV940_16445 SM00155 Phospholipase D. Active site motifs. AV940_16475 SM00448 cheY-homologous receiver domain AV940_16485 SM00387 Histidine kinase-like ATPases AV940_16490 SM00849 Metallo-beta-lactamase superfamily AV940_16495 SM00486 DNA polymerase type-B family AV940_16500 SM00054 EF-hand, calcium binding motif AV940_16530 SM00360 RNA recognition motif AV940_16570 SM00986 Uracil DNA glycosylase superfamily AV940_16570 SM00987 UreE urease accessory protein, C-terminal domain AV940_16575 SM00052 Putative diguanylate phosphodiesterase AV940_16575 SM00267 diguanylate cyclase AV940_16575 SM00448 cheY-homologous receiver domain AV940_16650 SM00173 Ras subfamily of RAS small GTPases AV940_16650 SM00175 Rab subfamily of small GTPases AV940_16655 SM00052 Putative diguanylate phosphodiesterase AV940_16655 SM00267 diguanylate cyclase AV940_16665 SM00563 Phosphate acyltransferases AV940_16670 SM00563 Phosphate acyltransferases AV940_16795 SM00052 Putative diguanylate phosphodiesterase AV940_16795 SM00267 diguanylate cyclase AV940_16810 SM00849 Metallo-beta-lactamase superfamily AV940_16840 SM00344 helix_turn_helix ASNC type AV940_16845 SM00100 Cyclic nucleotide-monophosphate binding domain AV940_16855 SM00849 Metallo-beta-lactamase superfamily AV940_16895 SM00900 AV940_16895 AV940_16980 SM00028 Tetratricopeptide repeats AV940_16985 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AV940_16995 SM00267 diguanylate cyclase AV940_16995 SM00448 cheY-homologous receiver domain AV940_17000 SM00479 AV940_17000 AV940_17005 SM00116 Domain in cystathionine beta-synthase and other proteins. AV940_17020 SM00387 Histidine kinase-like ATPases AV940_17020 SM00388 His Kinase A (phosphoacceptor) domain AV940_17020 SM00448 cheY-homologous receiver domain AV940_17050 SM00421 helix_turn_helix, Lux Regulon AV940_17050 SM00448 cheY-homologous receiver domain AV940_17065 SM00632 AV940_17065 AV940_17065 SM00642 Alpha-amylase domain AV940_17080 SM01358 AV940_17080 AV940_17085 SM00248 ankyrin repeats AV940_17090 SM01060 AV940_17090 AV940_17150 SM00984 UDP binding domain AV940_17250 SM00662 RNA polymerases D AV940_17255 SM00363 S4 RNA-binding domain AV940_17255 SM01390 AV940_17255 AV940_17315 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AV940_17320 SM01374 AV940_17320 AV940_17325 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AV940_17325 SM00387 Histidine kinase-like ATPases AV940_17325 SM00388 His Kinase A (phosphoacceptor) domain AV940_17325 SM00448 cheY-homologous receiver domain AV940_17340 SM00967 RNA 2'-O ribose methyltransferase substrate binding AV940_17345 SM00316 Ribosomal protein S1-like RNA-binding domain AV940_17345 SM00357 Cold shock protein domain AV940_17345 SM00955 AV940_17345 AV940_17360 SM00671 Sel1-like repeats. AV940_17410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_17415 SM00344 helix_turn_helix ASNC type AV940_17430 SM00357 Cold shock protein domain AV940_17460 SM00448 cheY-homologous receiver domain AV940_17470 SM00387 Histidine kinase-like ATPases AV940_17475 SM00448 cheY-homologous receiver domain AV940_17485 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AV940_17505 SM00382 ATPases associated with a variety of cellular activities AV940_17510 SM00421 helix_turn_helix, Lux Regulon AV940_17525 SM00382 ATPases associated with a variety of cellular activities AV940_17525 SM01086 C-terminal, D2-small domain, of ClpB protein AV940_17540 SM00487 DEAD-like helicases superfamily AV940_17540 SM00490 helicase superfamily c-terminal domain AV940_17555 SM00919 Malic enzyme, NAD binding domain AV940_17555 SM01274 AV940_17555 AV940_17605 SM00052 Putative diguanylate phosphodiesterase AV940_17610 SM00052 Putative diguanylate phosphodiesterase AV940_17620 SM00382 ATPases associated with a variety of cellular activities AV940_17625 SM00382 ATPases associated with a variety of cellular activities AV940_17625 SM00962 SRP54-type protein, GTPase domain AV940_17625 SM00963 SRP54-type protein, helical bundle domain AV940_17695 SM00052 Putative diguanylate phosphodiesterase AV940_17710 SM00382 ATPases associated with a variety of cellular activities AV940_17715 SM00448 cheY-homologous receiver domain AV940_17715 SM00862 Transcriptional regulatory protein, C terminal AV940_17720 SM00387 Histidine kinase-like ATPases AV940_17720 SM00388 His Kinase A (phosphoacceptor) domain AV940_17730 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AV940_17745 SM00116 Domain in cystathionine beta-synthase and other proteins. AV940_17805 SM00838 Elongation factor G C-terminus AV940_17805 SM00889 Elongation factor G, domain IV AV940_17820 SM00663 RNA polymerase I subunit A N-terminus AV940_17845 SM00649 Ribosomal protein L11/L12 AV940_17850 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AV940_17850 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AV940_17865 SM00382 ATPases associated with a variety of cellular activities AV940_17885 SM00487 DEAD-like helicases superfamily AV940_17885 SM00490 helicase superfamily c-terminal domain AV940_17895 SM00782 PhnA Zinc-Ribbon AV940_17915 SM00642 Alpha-amylase domain AV940_17960 SM00247 Beta/gamma crystallins AV940_17970 SM00487 DEAD-like helicases superfamily AV940_17970 SM00490 helicase superfamily c-terminal domain AV940_18060 SM00244 prohibitin homologues AV940_18065 SM00244 prohibitin homologues AV940_18085 SM01340 AV940_18085 AV940_18090 SM00257 Lysin motif AV940_18090 SM00646 AV940_18090 AV940_18150 SM00382 ATPases associated with a variety of cellular activities AV940_18205 SM00387 Histidine kinase-like ATPases AV940_18205 SM00388 His Kinase A (phosphoacceptor) domain AV940_18215 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_18220 SM00387 Histidine kinase-like ATPases AV940_18225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AV940_18230 SM00354 helix_turn _helix lactose operon repressor AV940_18250 SM00382 ATPases associated with a variety of cellular activities AV940_18310 SM00345 helix_turn_helix gluconate operon transcriptional repressor AV940_18310 SM00866 AV940_18310 AV940_18370 SM00382 ATPases associated with a variety of cellular activities AV940_18375 SM00382 ATPases associated with a variety of cellular activities AV940_18400 SM00382 ATPases associated with a variety of cellular activities AV940_18435 SM00841 Elongation factor P, C-terminal AV940_18435 SM01185 AV940_18435 AV940_18575 SM00867 YceI-like domain AV940_18610 SM00829 Enoylreductase AV940_18615 SM00267 diguanylate cyclase AV940_18620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_18620 SM00387 Histidine kinase-like ATPases AV940_18620 SM00388 His Kinase A (phosphoacceptor) domain AV940_18620 SM00448 cheY-homologous receiver domain AV940_18645 SM00382 ATPases associated with a variety of cellular activities AV940_18715 SM00420 helix_turn_helix, Deoxyribose operon repressor AV940_18715 SM01134 AV940_18715 AV940_18725 SM00267 diguanylate cyclase AV940_18740 SM00342 helix_turn_helix, arabinose operon control protein AV940_18740 SM01009 AlkA N-terminal domain AV940_18770 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AV940_18770 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AV940_18790 SM00833 Cobalamin synthesis protein cobW C-terminal domain AV940_18800 SM00052 Putative diguanylate phosphodiesterase AV940_18800 SM00267 diguanylate cyclase AV940_18810 SM00883 Chaperonin 10 Kd subunit AV940_18840 SM00878 Biotin carboxylase C-terminal domain AV940_18860 SM00479 AV940_18860 AV940_18860 SM00990 AV940_18860 AV940_18885 SM00062 Bacterial periplasmic substrate-binding proteins AV940_18905 SM00798 AICARFT/IMPCHase bienzyme AV940_18905 SM00851 MGS-like domain AV940_18915 SM01209 AV940_18915 AV940_18915 SM01210 AV940_18915 AV940_18955 SM00448 cheY-homologous receiver domain AV940_18955 SM00862 Transcriptional regulatory protein, C terminal AV940_18960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AV940_18960 SM00387 Histidine kinase-like ATPases AV940_18960 SM00388 His Kinase A (phosphoacceptor) domain AV940_18980 SM00363 S4 RNA-binding domain AV940_18995 SM00382 ATPases associated with a variety of cellular activities AV940_19045 SM00849 Metallo-beta-lactamase superfamily AV940_19075 SM00867 YceI-like domain AV940_19110 SM00382 ATPases associated with a variety of cellular activities AV940_19130 SM00320 WD40 repeats AV940_19150 SM00316 Ribosomal protein S1-like RNA-binding domain AV940_19150 SM00732 Likely ribonuclease with RNase H fold. AV940_19175 SM00631 AV940_19175 AV940_19205 SM00342 helix_turn_helix, arabinose operon control protein AV940_19205 SM00871 Bacterial transcription activator, effector binding domain AV940_19290 SM00563 Phosphate acyltransferases AV940_19315 SM00382 ATPases associated with a variety of cellular activities AV940_19380 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AV940_19505 SM00354 helix_turn _helix lactose operon repressor AV940_19520 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AV940_19530 SM01144 AV940_19530 AV940_19555 SM00382 ATPases associated with a variety of cellular activities AV940_19595 SM00470 ParB-like nuclease domain AV940_19610 SM01228 AV940_19610