AOR13_1010 SM00342 helix_turn_helix, arabinose operon control protein AOR13_102 SM00563 Phosphate acyltransferases AOR13_1025 SM00267 diguanylate cyclase AOR13_1027 SM00825 Beta-ketoacyl synthase AOR13_1028 SM00100 Cyclic nucleotide-monophosphate binding domain AOR13_1028 SM00419 helix_turn_helix, cAMP Regulatory protein AOR13_1029 SM01007 Class II Aldolase and Adducin N-terminal domain AOR13_103 SM00563 Phosphate acyltransferases AOR13_1031 SM00859 Semialdehyde dehydrogenase, NAD binding domain AOR13_1045 SM01092 CO dehydrogenase flavoprotein C-terminal domain AOR13_1046 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AOR13_1047 SM00382 ATPases associated with a variety of cellular activities AOR13_105 SM00052 Putative diguanylate phosphodiesterase AOR13_105 SM00267 diguanylate cyclase AOR13_1050 SM01321 AOR13_1050 AOR13_1051 SM00244 prohibitin homologues AOR13_1054 SM00098 Alkaline phosphatase homologues AOR13_1055 SM00098 Alkaline phosphatase homologues AOR13_1058 SM00840 AOR13_1058 AOR13_106 SM00173 Ras subfamily of RAS small GTPases AOR13_106 SM00175 Rab subfamily of small GTPases AOR13_1061 SM00257 Lysin motif AOR13_1062 SM00849 Metallo-beta-lactamase superfamily AOR13_1072 SM00100 Cyclic nucleotide-monophosphate binding domain AOR13_1075 SM00244 prohibitin homologues AOR13_1078 SM01060 AOR13_1078 AOR13_1080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_1080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_1093 SM00387 Histidine kinase-like ATPases AOR13_1093 SM00388 His Kinase A (phosphoacceptor) domain AOR13_1094 SM00448 cheY-homologous receiver domain AOR13_1094 SM00862 Transcriptional regulatory protein, C terminal AOR13_1096 SM00267 diguanylate cyclase AOR13_1107 SM00052 Putative diguanylate phosphodiesterase AOR13_1107 SM00267 diguanylate cyclase AOR13_1111 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AOR13_1112 SM00354 helix_turn _helix lactose operon repressor AOR13_1122 SM00387 Histidine kinase-like ATPases AOR13_1122 SM00388 His Kinase A (phosphoacceptor) domain AOR13_1122 SM00448 cheY-homologous receiver domain AOR13_1124 SM00710 Parallel beta-helix repeats AOR13_1131 SM00858 AOR13_1131 AOR13_1132 SM00354 helix_turn _helix lactose operon repressor AOR13_1137 SM00822 AOR13_1137 AOR13_1145 SM00448 cheY-homologous receiver domain AOR13_1145 SM00862 Transcriptional regulatory protein, C terminal AOR13_1146 SM00387 Histidine kinase-like ATPases AOR13_1146 SM00388 His Kinase A (phosphoacceptor) domain AOR13_1151 SM00749 bacterial OsmY and nodulation domain AOR13_1164 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AOR13_1166 SM00642 Alpha-amylase domain AOR13_1167 SM00642 Alpha-amylase domain AOR13_1168 SM01350 AOR13_1168 AOR13_1172 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AOR13_1173 SM00631 AOR13_1173 AOR13_1187 SM00387 Histidine kinase-like ATPases AOR13_1187 SM00388 His Kinase A (phosphoacceptor) domain AOR13_1187 SM00448 cheY-homologous receiver domain AOR13_1188 SM00448 cheY-homologous receiver domain AOR13_1189 SM00387 Histidine kinase-like ATPases AOR13_1189 SM00388 His Kinase A (phosphoacceptor) domain AOR13_1191 SM00382 ATPases associated with a variety of cellular activities AOR13_1191 SM00448 cheY-homologous receiver domain AOR13_1194 SM00450 Rhodanese Homology Domain AOR13_1195 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AOR13_1203 SM00849 Metallo-beta-lactamase superfamily AOR13_1204 SM00052 Putative diguanylate phosphodiesterase AOR13_1204 SM00267 diguanylate cyclase AOR13_1219 SM00387 Histidine kinase-like ATPases AOR13_1219 SM00388 His Kinase A (phosphoacceptor) domain AOR13_1219 SM00448 cheY-homologous receiver domain AOR13_122 SM00052 Putative diguanylate phosphodiesterase AOR13_122 SM00267 diguanylate cyclase AOR13_122 SM00448 cheY-homologous receiver domain AOR13_123 SM00986 Uracil DNA glycosylase superfamily AOR13_123 SM00987 UreE urease accessory protein, C-terminal domain AOR13_1261 SM00852 Probable molybdopterin binding domain AOR13_1267 SM00382 ATPases associated with a variety of cellular activities AOR13_1268 SM00729 Elongator protein 3, MiaB family, Radical SAM AOR13_1273 SM00855 Phosphoglycerate mutase family AOR13_1276 SM00829 Enoylreductase AOR13_13 SM01060 AOR13_13 AOR13_1304 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AOR13_1304 SM00091 PAS domain AOR13_1304 SM00387 Histidine kinase-like ATPases AOR13_1304 SM00388 His Kinase A (phosphoacceptor) domain AOR13_1304 SM00448 cheY-homologous receiver domain AOR13_1305 SM00448 cheY-homologous receiver domain AOR13_1305 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AOR13_1307 SM00316 Ribosomal protein S1-like RNA-binding domain AOR13_1311 SM01387 AOR13_1311 AOR13_1314 SM00267 diguanylate cyclase AOR13_1318 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AOR13_1319 SM00028 Tetratricopeptide repeats AOR13_1319 SM00448 cheY-homologous receiver domain AOR13_132 SM00360 RNA recognition motif AOR13_1333 SM00382 ATPases associated with a variety of cellular activities AOR13_1337 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AOR13_1337 SM00267 diguanylate cyclase AOR13_1341 SM00052 Putative diguanylate phosphodiesterase AOR13_1341 SM00267 diguanylate cyclase AOR13_1341 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_1359 SM00458 Ricin-type beta-trefoil AOR13_1367 SM00347 helix_turn_helix multiple antibiotic resistance protein AOR13_1370 SM00028 Tetratricopeptide repeats AOR13_138 SM00054 EF-hand, calcium binding motif AOR13_1381 SM00028 Tetratricopeptide repeats AOR13_1385 SM00771 ZipA, C-terminal domain (FtsZ-binding) AOR13_1386 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AOR13_1386 SM00292 breast cancer carboxy-terminal domain AOR13_1386 SM00532 Ligase N family AOR13_1389 SM00382 ATPases associated with a variety of cellular activities AOR13_139 SM00486 DNA polymerase type-B family AOR13_1393 SM00729 Elongator protein 3, MiaB family, Radical SAM AOR13_14 SM00248 ankyrin repeats AOR13_140 SM00849 Metallo-beta-lactamase superfamily AOR13_1407 SM00861 Transketolase, pyrimidine binding domain AOR13_141 SM00387 Histidine kinase-like ATPases AOR13_1410 SM00881 CoA binding domain AOR13_1419 SM00642 Alpha-amylase domain AOR13_1420 SM00642 Alpha-amylase domain AOR13_1422 SM00642 Alpha-amylase domain AOR13_1423 SM00354 helix_turn _helix lactose operon repressor AOR13_1450 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AOR13_1454 SM00448 cheY-homologous receiver domain AOR13_1454 SM00850 LytTr DNA-binding domain AOR13_1457 SM00028 Tetratricopeptide repeats AOR13_1457 SM00448 cheY-homologous receiver domain AOR13_146 SM00155 Phospholipase D. Active site motifs. AOR13_1460 SM00450 Rhodanese Homology Domain AOR13_1461 SM00054 EF-hand, calcium binding motif AOR13_1462 SM00363 S4 RNA-binding domain AOR13_147 SM00267 diguanylate cyclase AOR13_1474 SM00530 Helix-turn-helix XRE-family like proteins AOR13_1480 SM00487 DEAD-like helicases superfamily AOR13_1480 SM00490 helicase superfamily c-terminal domain AOR13_1481 SM00882 Coenzyme A transferase AOR13_1482 SM00882 Coenzyme A transferase AOR13_1485 SM00387 Histidine kinase-like ATPases AOR13_1494 SM00861 Transketolase, pyrimidine binding domain AOR13_1497 SM00220 Serine/Threonine protein kinases, catalytic domain AOR13_15 SM01358 AOR13_15 AOR13_1502 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AOR13_1504 SM00945 ProQ/FINO family AOR13_1505 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AOR13_1505 SM00245 tail specific protease AOR13_1516 SM00981 AOR13_1516 AOR13_1518 SM00382 ATPases associated with a variety of cellular activities AOR13_152 SM00345 helix_turn_helix gluconate operon transcriptional repressor AOR13_152 SM00895 AOR13_152 AOR13_1547 SM00100 Cyclic nucleotide-monophosphate binding domain AOR13_1547 SM00419 helix_turn_helix, cAMP Regulatory protein AOR13_155 SM00487 DEAD-like helicases superfamily AOR13_155 SM00490 helicase superfamily c-terminal domain AOR13_1552 SM00047 Lysozyme subfamily 2 AOR13_1556 SM00450 Rhodanese Homology Domain AOR13_1558 SM01144 AOR13_1558 AOR13_156 SM00240 Forkhead associated domain AOR13_156 SM00382 ATPases associated with a variety of cellular activities AOR13_157 SM00240 Forkhead associated domain AOR13_1574 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AOR13_1574 SM00465 GIY-YIG type nucleases (URI domain) AOR13_1575 SM00421 helix_turn_helix, Lux Regulon AOR13_1575 SM00448 cheY-homologous receiver domain AOR13_158 SM00331 Sigma factor PP2C-like phosphatases AOR13_158 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AOR13_1583 SM00388 His Kinase A (phosphoacceptor) domain AOR13_1584 SM00448 cheY-homologous receiver domain AOR13_1584 SM00862 Transcriptional regulatory protein, C terminal AOR13_159 SM00220 Serine/Threonine protein kinases, catalytic domain AOR13_1598 SM00382 ATPases associated with a variety of cellular activities AOR13_1600 SM00843 AOR13_1600 AOR13_1601 SM00344 helix_turn_helix ASNC type AOR13_1602 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AOR13_1602 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AOR13_1603 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AOR13_1604 SM00028 Tetratricopeptide repeats AOR13_1607 SM00411 bacterial (prokaryotic) histone like domain AOR13_1608 SM00316 Ribosomal protein S1-like RNA-binding domain AOR13_1612 SM00434 DNA Topoisomerase IV AOR13_1617 SM00387 Histidine kinase-like ATPases AOR13_1617 SM00388 His Kinase A (phosphoacceptor) domain AOR13_1618 SM00448 cheY-homologous receiver domain AOR13_1618 SM00862 Transcriptional regulatory protein, C terminal AOR13_162 SM00240 Forkhead associated domain AOR13_1638 SM00382 ATPases associated with a variety of cellular activities AOR13_164 SM00240 Forkhead associated domain AOR13_1647 SM01130 AOR13_1647 AOR13_165 SM00331 Sigma factor PP2C-like phosphatases AOR13_165 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AOR13_166 SM00240 Forkhead associated domain AOR13_1662 SM00421 helix_turn_helix, Lux Regulon AOR13_1662 SM00448 cheY-homologous receiver domain AOR13_1668 SM00642 Alpha-amylase domain AOR13_1669 SM00852 Probable molybdopterin binding domain AOR13_1673 SM00382 ATPases associated with a variety of cellular activities AOR13_1683 SM00563 Phosphate acyltransferases AOR13_1695 SM00893 Electron transfer flavoprotein domain AOR13_1696 SM00893 Electron transfer flavoprotein domain AOR13_1698 SM00528 Domain in histone-like proteins of HNS family AOR13_1702 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_1702 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_1706 SM00354 helix_turn _helix lactose operon repressor AOR13_1708 SM00797 Allophanate hydrolase subunit 2 AOR13_1709 SM00796 Allophanate hydrolase subunit 1 AOR13_1718 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AOR13_1719 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AOR13_173 SM00822 AOR13_173 AOR13_1736 SM00382 ATPases associated with a variety of cellular activities AOR13_1738 SM00316 Ribosomal protein S1-like RNA-binding domain AOR13_1738 SM00322 K homology RNA-binding domain AOR13_1739 SM00507 HNH nucleases AOR13_174 SM00710 Parallel beta-helix repeats AOR13_1748 SM00046 Diacylglycerol kinase catalytic domain (presumed) AOR13_1748 SM00195 Dual specificity phosphatase, catalytic domain AOR13_1751 SM00052 Putative diguanylate phosphodiesterase AOR13_1751 SM00267 diguanylate cyclase AOR13_1751 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_1757 SM00382 ATPases associated with a variety of cellular activities AOR13_177 SM00710 Parallel beta-helix repeats AOR13_1770 SM00936 Penicillin-binding protein 5, C-terminal domain AOR13_1773 SM00729 Elongator protein 3, MiaB family, Radical SAM AOR13_1775 SM00870 AOR13_1775 AOR13_1787 SM00316 Ribosomal protein S1-like RNA-binding domain AOR13_1789 SM00382 ATPases associated with a variety of cellular activities AOR13_1789 SM01086 C-terminal, D2-small domain, of ClpB protein AOR13_1791 SM00357 Cold shock protein domain AOR13_1798 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AOR13_1799 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AOR13_18 SM00632 AOR13_18 AOR13_18 SM00642 Alpha-amylase domain AOR13_1819 SM00710 Parallel beta-helix repeats AOR13_1825 SM00354 helix_turn _helix lactose operon repressor AOR13_1829 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AOR13_184 SM00345 helix_turn_helix gluconate operon transcriptional repressor AOR13_184 SM00895 AOR13_184 AOR13_1842 SM00267 diguanylate cyclase AOR13_1851 SM00825 Beta-ketoacyl synthase AOR13_1853 SM00822 AOR13_1853 AOR13_1854 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AOR13_1861 SM00363 S4 RNA-binding domain AOR13_1862 SM00316 Ribosomal protein S1-like RNA-binding domain AOR13_1863 SM00587 ZnF_C4 abd HLH domain containing kinases domain AOR13_187 SM00421 helix_turn_helix, Lux Regulon AOR13_187 SM00448 cheY-homologous receiver domain AOR13_1878 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AOR13_1878 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AOR13_1878 SM00493 AOR13_1878 AOR13_1880 SM00634 Bacterial Ig-like domain (group 1) AOR13_1883 SM00382 ATPases associated with a variety of cellular activities AOR13_1884 SM00052 Putative diguanylate phosphodiesterase AOR13_189 SM00900 AOR13_189 AOR13_1890 SM00479 AOR13_1890 AOR13_1892 SM00829 Enoylreductase AOR13_1893 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AOR13_1897 SM00382 ATPases associated with a variety of cellular activities AOR13_1897 SM00487 DEAD-like helicases superfamily AOR13_1897 SM00490 helicase superfamily c-terminal domain AOR13_1897 SM00847 Helicase associated domain (HA2) Add an annotation AOR13_1899 SM00342 helix_turn_helix, arabinose operon control protein AOR13_190 SM00897 FIST N domain AOR13_190 SM01204 AOR13_190 AOR13_1900 SM00267 diguanylate cyclase AOR13_1904 SM00116 Domain in cystathionine beta-synthase and other proteins. AOR13_1905 SM00387 Histidine kinase-like ATPases AOR13_1905 SM00388 His Kinase A (phosphoacceptor) domain AOR13_1905 SM00448 cheY-homologous receiver domain AOR13_1906 SM00479 AOR13_1906 AOR13_1908 SM00062 Bacterial periplasmic substrate-binding proteins AOR13_1908 SM00267 diguanylate cyclase AOR13_191 SM00091 PAS domain AOR13_191 SM00387 Histidine kinase-like ATPases AOR13_191 SM00388 His Kinase A (phosphoacceptor) domain AOR13_191 SM00448 cheY-homologous receiver domain AOR13_1910 SM00422 helix_turn_helix, mercury resistance AOR13_1914 SM00878 Biotin carboxylase C-terminal domain AOR13_1916 SM01321 AOR13_1916 AOR13_1917 SM00052 Putative diguanylate phosphodiesterase AOR13_1917 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AOR13_1917 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AOR13_1917 SM00091 PAS domain AOR13_1917 SM00267 diguanylate cyclase AOR13_192 SM00421 helix_turn_helix, Lux Regulon AOR13_192 SM00448 cheY-homologous receiver domain AOR13_1935 SM00487 DEAD-like helicases superfamily AOR13_1935 SM00490 helicase superfamily c-terminal domain AOR13_1935 SM00982 AOR13_1935 AOR13_1935 SM01058 CarD-like/TRCF domain AOR13_1943 SM00411 bacterial (prokaryotic) histone like domain AOR13_1944 SM00873 B3/4 domain AOR13_1944 SM00874 tRNA synthetase B5 domain AOR13_1944 SM00896 Ferredoxin-fold anticodon binding domain AOR13_1959 SM00052 Putative diguanylate phosphodiesterase AOR13_1959 SM00267 diguanylate cyclase AOR13_1973 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AOR13_1991 SM00387 Histidine kinase-like ATPases AOR13_1991 SM00388 His Kinase A (phosphoacceptor) domain AOR13_1991 SM00448 cheY-homologous receiver domain AOR13_1992 SM00267 diguanylate cyclase AOR13_1992 SM00448 cheY-homologous receiver domain AOR13_1993 SM00052 Putative diguanylate phosphodiesterase AOR13_1993 SM00091 PAS domain AOR13_1993 SM00267 diguanylate cyclase AOR13_1993 SM00448 cheY-homologous receiver domain AOR13_2000 SM01092 CO dehydrogenase flavoprotein C-terminal domain AOR13_2001 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AOR13_2007 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AOR13_2007 SM00091 PAS domain AOR13_2007 SM00267 diguanylate cyclase AOR13_2011 SM00028 Tetratricopeptide repeats AOR13_2011 SM00267 diguanylate cyclase AOR13_2026 SM00052 Putative diguanylate phosphodiesterase AOR13_2026 SM00267 diguanylate cyclase AOR13_203 SM00382 ATPases associated with a variety of cellular activities AOR13_2032 SM00460 Transglutaminase/protease-like homologues AOR13_2034 SM00331 Sigma factor PP2C-like phosphatases AOR13_2034 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AOR13_2035 SM01116 AOR13_2035 AOR13_2036 SM00838 Elongation factor G C-terminus AOR13_2036 SM00889 Elongation factor G, domain IV AOR13_2046 SM00937 AOR13_2046 AOR13_2051 SM01400 AOR13_2051 AOR13_2052 SM00052 Putative diguanylate phosphodiesterase AOR13_2052 SM00267 diguanylate cyclase AOR13_2054 SM00829 Enoylreductase AOR13_206 SM00062 Bacterial periplasmic substrate-binding proteins AOR13_2064 SM00903 Flavin reductase like domain AOR13_207 SM00564 beta-propeller repeat AOR13_2071 SM00729 Elongator protein 3, MiaB family, Radical SAM AOR13_2074 SM00116 Domain in cystathionine beta-synthase and other proteins. AOR13_2074 SM01091 Transporter associated domain AOR13_2082 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_2082 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_2084 SM00851 MGS-like domain AOR13_2084 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AOR13_2085 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AOR13_209 SM00028 Tetratricopeptide repeats AOR13_209 SM00267 diguanylate cyclase AOR13_2090 SM00052 Putative diguanylate phosphodiesterase AOR13_2090 SM00091 PAS domain AOR13_2092 SM00271 DnaJ molecular chaperone homology domain AOR13_2095 SM00387 Histidine kinase-like ATPases AOR13_2095 SM00388 His Kinase A (phosphoacceptor) domain AOR13_2095 SM00448 cheY-homologous receiver domain AOR13_2096 SM00421 helix_turn_helix, Lux Regulon AOR13_2096 SM00448 cheY-homologous receiver domain AOR13_21 SM00421 helix_turn_helix, Lux Regulon AOR13_21 SM00448 cheY-homologous receiver domain AOR13_210 SM00267 diguanylate cyclase AOR13_2110 SM01266 AOR13_2110 AOR13_2113 SM00363 S4 RNA-binding domain AOR13_2127 SM00448 cheY-homologous receiver domain AOR13_2127 SM00862 Transcriptional regulatory protein, C terminal AOR13_2128 SM00387 Histidine kinase-like ATPases AOR13_2130 SM00905 Dihydroneopterin aldolase AOR13_2133 SM00382 ATPases associated with a variety of cellular activities AOR13_2136 SM01321 AOR13_2136 AOR13_2149 SM00028 Tetratricopeptide repeats AOR13_2149 SM00448 cheY-homologous receiver domain AOR13_2151 SM00729 Elongator protein 3, MiaB family, Radical SAM AOR13_2152 SM00382 ATPases associated with a variety of cellular activities AOR13_2157 SM00382 ATPases associated with a variety of cellular activities AOR13_2159 SM00226 Low molecular weight phosphatase family AOR13_216 SM00382 ATPases associated with a variety of cellular activities AOR13_2164 SM00729 Elongator protein 3, MiaB family, Radical SAM AOR13_2164 SM00876 Biotin and Thiamin Synthesis associated domain AOR13_2177 SM00267 diguanylate cyclase AOR13_218 SM01034 Sensors of blue-light using FAD AOR13_2185 SM00116 Domain in cystathionine beta-synthase and other proteins. AOR13_2187 SM00829 Enoylreductase AOR13_2188 SM00829 Enoylreductase AOR13_219 SM00387 Histidine kinase-like ATPases AOR13_2192 SM00859 Semialdehyde dehydrogenase, NAD binding domain AOR13_2198 SM00028 Tetratricopeptide repeats AOR13_2198 SM00387 Histidine kinase-like ATPases AOR13_2198 SM00388 His Kinase A (phosphoacceptor) domain AOR13_2198 SM00448 cheY-homologous receiver domain AOR13_2208 SM00267 diguanylate cyclase AOR13_221 SM00028 Tetratricopeptide repeats AOR13_2217 SM00028 Tetratricopeptide repeats AOR13_2224 SM00382 ATPases associated with a variety of cellular activities AOR13_2225 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AOR13_2230 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AOR13_2231 SM00382 ATPases associated with a variety of cellular activities AOR13_2231 SM00448 cheY-homologous receiver domain AOR13_2233 SM00387 Histidine kinase-like ATPases AOR13_2233 SM00388 His Kinase A (phosphoacceptor) domain AOR13_2235 SM00052 Putative diguanylate phosphodiesterase AOR13_2235 SM00267 diguanylate cyclase AOR13_2237 SM00331 Sigma factor PP2C-like phosphatases AOR13_2237 SM00448 cheY-homologous receiver domain AOR13_2240 SM00448 cheY-homologous receiver domain AOR13_2241 SM00830 Chorismate mutase type II AOR13_2242 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_2242 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_2243 SM00830 Chorismate mutase type II AOR13_2256 SM00382 ATPases associated with a variety of cellular activities AOR13_2265 SM00382 ATPases associated with a variety of cellular activities AOR13_2265 SM00962 SRP54-type protein, GTPase domain AOR13_2265 SM00963 SRP54-type protein, helical bundle domain AOR13_2267 SM01091 Transporter associated domain AOR13_2269 SM00855 Phosphoglycerate mutase family AOR13_2271 SM00052 Putative diguanylate phosphodiesterase AOR13_2271 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AOR13_2271 SM00091 PAS domain AOR13_2271 SM00267 diguanylate cyclase AOR13_2279 SM00327 von Willebrand factor (vWF) type A domain AOR13_2280 SM00028 Tetratricopeptide repeats AOR13_2285 SM00267 diguanylate cyclase AOR13_230 SM00996 S-adenosyl-L-homocysteine hydrolase AOR13_230 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AOR13_2303 SM00487 DEAD-like helicases superfamily AOR13_2303 SM00490 helicase superfamily c-terminal domain AOR13_231 SM00267 diguanylate cyclase AOR13_2311 SM00900 AOR13_2311 AOR13_2313 SM00478 endonuclease III AOR13_2313 SM00525 AOR13_2313 AOR13_2315 SM00525 AOR13_2315 AOR13_2319 SM00028 Tetratricopeptide repeats AOR13_2320 SM00267 diguanylate cyclase AOR13_2322 SM00357 Cold shock protein domain AOR13_2326 SM00479 AOR13_2326 AOR13_2329 SM00965 Secretin and TonB N terminus short domain AOR13_2335 SM00763 PrkA AAA domain AOR13_2341 SM00463 Small MutS-related domain AOR13_2343 SM00387 Histidine kinase-like ATPases AOR13_2344 SM00382 ATPases associated with a variety of cellular activities AOR13_2344 SM00448 cheY-homologous receiver domain AOR13_2347 SM00382 ATPases associated with a variety of cellular activities AOR13_2349 SM01321 AOR13_2349 AOR13_2357 SM00937 AOR13_2357 AOR13_2364 SM00052 Putative diguanylate phosphodiesterase AOR13_2364 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AOR13_2364 SM00091 PAS domain AOR13_2364 SM00267 diguanylate cyclase AOR13_2365 SM00836 DALR anticodon binding domain AOR13_2365 SM01016 Arginyl tRNA synthetase N terminal dom AOR13_2381 SM00028 Tetratricopeptide repeats AOR13_2388 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AOR13_2389 SM00028 Tetratricopeptide repeats AOR13_2397 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AOR13_2398 SM00344 helix_turn_helix ASNC type AOR13_2402 SM00091 PAS domain AOR13_2402 SM00382 ATPases associated with a variety of cellular activities AOR13_2407 SM00382 ATPases associated with a variety of cellular activities AOR13_2411 SM00382 ATPases associated with a variety of cellular activities AOR13_2412 SM00382 ATPases associated with a variety of cellular activities AOR13_2421 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AOR13_2428 SM00947 Carbonic anhydrase AOR13_2432 SM01018 B12 binding domain AOR13_2436 SM00260 Two component signalling adaptor domain AOR13_2437 SM00260 Two component signalling adaptor domain AOR13_2439 SM00448 cheY-homologous receiver domain AOR13_2440 SM00073 Histidine Phosphotransfer domain AOR13_2440 SM00260 Two component signalling adaptor domain AOR13_2440 SM00387 Histidine kinase-like ATPases AOR13_2440 SM01231 AOR13_2440 AOR13_2442 SM00448 cheY-homologous receiver domain AOR13_2445 SM00382 ATPases associated with a variety of cellular activities AOR13_2445 SM00962 SRP54-type protein, GTPase domain AOR13_2457 SM00382 ATPases associated with a variety of cellular activities AOR13_2462 SM00382 ATPases associated with a variety of cellular activities AOR13_2462 SM00448 cheY-homologous receiver domain AOR13_2463 SM00387 Histidine kinase-like ATPases AOR13_2463 SM00388 His Kinase A (phosphoacceptor) domain AOR13_2464 SM00382 ATPases associated with a variety of cellular activities AOR13_2470 SM00858 AOR13_2470 AOR13_2474 SM00822 AOR13_2474 AOR13_2497 SM00047 Lysozyme subfamily 2 AOR13_2506 SM00138 Methyltransferase, chemotaxis proteins AOR13_2507 SM00260 Two component signalling adaptor domain AOR13_2507 SM00448 cheY-homologous receiver domain AOR13_2508 SM00858 AOR13_2508 AOR13_2514 SM00052 Putative diguanylate phosphodiesterase AOR13_2515 SM00421 helix_turn_helix, Lux Regulon AOR13_2517 SM00382 ATPases associated with a variety of cellular activities AOR13_2519 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AOR13_2521 SM00062 Bacterial periplasmic substrate-binding proteins AOR13_2521 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AOR13_2522 SM00463 Small MutS-related domain AOR13_2524 SM01211 AOR13_2524 AOR13_2525 SM00062 Bacterial periplasmic substrate-binding proteins AOR13_2530 SM00267 diguanylate cyclase AOR13_2531 SM00977 TilS substrate C-terminal domain AOR13_2533 SM00481 DNA polymerase alpha chain like domain AOR13_2538 SM00935 Outer membrane protein (OmpH-like) AOR13_2540 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AOR13_2550 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AOR13_2567 SM00267 diguanylate cyclase AOR13_2571 SM01329 AOR13_2571 AOR13_2572 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AOR13_2580 SM00382 ATPases associated with a variety of cellular activities AOR13_2593 SM00382 ATPases associated with a variety of cellular activities AOR13_2598 SM00382 ATPases associated with a variety of cellular activities AOR13_2599 SM00382 ATPases associated with a variety of cellular activities AOR13_2601 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AOR13_2601 SM00534 ATPase domain of DNA mismatch repair MUTS family AOR13_2603 SM01192 AOR13_2603 AOR13_2603 SM01193 AOR13_2603 AOR13_2607 SM00917 LeuA allosteric (dimerisation) domain AOR13_2608 SM01329 AOR13_2608 AOR13_2613 SM00382 ATPases associated with a variety of cellular activities AOR13_2616 SM00487 DEAD-like helicases superfamily AOR13_2616 SM00490 helicase superfamily c-terminal domain AOR13_2618 SM00729 Elongator protein 3, MiaB family, Radical SAM AOR13_2622 SM00091 PAS domain AOR13_2623 SM00448 cheY-homologous receiver domain AOR13_264 SM00387 Histidine kinase-like ATPases AOR13_264 SM00388 His Kinase A (phosphoacceptor) domain AOR13_264 SM00448 cheY-homologous receiver domain AOR13_264 SM01358 AOR13_264 AOR13_2651 SM00382 ATPases associated with a variety of cellular activities AOR13_2656 SM00267 diguanylate cyclase AOR13_2659 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AOR13_2659 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_2662 SM01263 AOR13_2662 AOR13_2664 SM00347 helix_turn_helix multiple antibiotic resistance protein AOR13_2665 SM00758 AOR13_2665 AOR13_2665 SM01217 AOR13_2665 AOR13_2669 SM00342 helix_turn_helix, arabinose operon control protein AOR13_267 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AOR13_267 SM00091 PAS domain AOR13_267 SM00267 diguanylate cyclase AOR13_2674 SM00342 helix_turn_helix, arabinose operon control protein AOR13_2678 SM00267 diguanylate cyclase AOR13_2688 SM00382 ATPases associated with a variety of cellular activities AOR13_2696 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AOR13_2697 SM00861 Transketolase, pyrimidine binding domain AOR13_27 SM00387 Histidine kinase-like ATPases AOR13_27 SM00388 His Kinase A (phosphoacceptor) domain AOR13_27 SM00448 cheY-homologous receiver domain AOR13_270 SM00563 Phosphate acyltransferases AOR13_2700 SM01118 AOR13_2700 AOR13_2705 SM00342 helix_turn_helix, arabinose operon control protein AOR13_2707 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AOR13_2707 SM00387 Histidine kinase-like ATPases AOR13_2707 SM00388 His Kinase A (phosphoacceptor) domain AOR13_2707 SM00448 cheY-homologous receiver domain AOR13_2708 SM00052 Putative diguanylate phosphodiesterase AOR13_2708 SM00267 diguanylate cyclase AOR13_271 SM00073 Histidine Phosphotransfer domain AOR13_2714 SM00342 helix_turn_helix, arabinose operon control protein AOR13_2719 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AOR13_272 SM00382 ATPases associated with a variety of cellular activities AOR13_272 SM00448 cheY-homologous receiver domain AOR13_2721 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AOR13_2728 SM00382 ATPases associated with a variety of cellular activities AOR13_273 SM00091 PAS domain AOR13_273 SM00387 Histidine kinase-like ATPases AOR13_273 SM00388 His Kinase A (phosphoacceptor) domain AOR13_2734 SM00382 ATPases associated with a variety of cellular activities AOR13_2739 SM00116 Domain in cystathionine beta-synthase and other proteins. AOR13_2739 SM00924 MgtE intracellular N domain AOR13_2741 SM00342 helix_turn_helix, arabinose operon control protein AOR13_2749 SM00631 AOR13_2749 AOR13_275 SM01230 AOR13_275 AOR13_2750 SM00965 Secretin and TonB N terminus short domain AOR13_2758 SM00954 Region found in RelA / SpoT proteins AOR13_2767 SM00271 DnaJ molecular chaperone homology domain AOR13_2773 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_2773 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_278 SM00448 cheY-homologous receiver domain AOR13_2784 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AOR13_2784 SM00091 PAS domain AOR13_2784 SM00387 Histidine kinase-like ATPases AOR13_2784 SM00388 His Kinase A (phosphoacceptor) domain AOR13_2784 SM00448 cheY-homologous receiver domain AOR13_2785 SM00448 cheY-homologous receiver domain AOR13_2785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AOR13_2787 SM00028 Tetratricopeptide repeats AOR13_2794 SM00710 Parallel beta-helix repeats AOR13_2795 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AOR13_2797 SM00387 Histidine kinase-like ATPases AOR13_2797 SM00388 His Kinase A (phosphoacceptor) domain AOR13_2798 SM00448 cheY-homologous receiver domain AOR13_2798 SM00862 Transcriptional regulatory protein, C terminal AOR13_2799 SM00387 Histidine kinase-like ATPases AOR13_2802 SM00530 Helix-turn-helix XRE-family like proteins AOR13_2809 SM00905 Dihydroneopterin aldolase AOR13_2810 SM01207 AOR13_2810 AOR13_2815 SM00400 zinc finger AOR13_2815 SM00493 AOR13_2815 AOR13_2815 SM00766 DNA primase DnaG DnaB-binding AOR13_2817 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_2817 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_2824 SM01007 Class II Aldolase and Adducin N-terminal domain AOR13_2825 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AOR13_2841 SM00382 ATPases associated with a variety of cellular activities AOR13_2844 SM00091 PAS domain AOR13_2844 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_2847 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AOR13_2853 SM01012 AOR13_2853 AOR13_2855 SM00014 Acid phosphatase homologues AOR13_2864 SM00841 Elongation factor P, C-terminal AOR13_2864 SM01185 AOR13_2864 AOR13_2870 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AOR13_2871 SM00052 Putative diguanylate phosphodiesterase AOR13_2871 SM00091 PAS domain AOR13_2871 SM00138 Methyltransferase, chemotaxis proteins AOR13_2871 SM00267 diguanylate cyclase AOR13_2873 SM00387 Histidine kinase-like ATPases AOR13_2873 SM00433 TopoisomeraseII AOR13_2881 SM00028 Tetratricopeptide repeats AOR13_2882 SM00487 DEAD-like helicases superfamily AOR13_2882 SM00490 helicase superfamily c-terminal domain AOR13_2887 SM00635 Bacterial Ig-like domain 2 AOR13_2902 SM00028 Tetratricopeptide repeats AOR13_2907 SM00895 AOR13_2907 AOR13_2908 SM00346 helix_turn_helix isocitrate lyase regulation AOR13_2916 SM00342 helix_turn_helix, arabinose operon control protein AOR13_2921 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AOR13_2922 SM00829 Enoylreductase AOR13_2927 SM00345 helix_turn_helix gluconate operon transcriptional repressor AOR13_2927 SM00895 AOR13_2927 AOR13_2931 SM00487 DEAD-like helicases superfamily AOR13_2931 SM00490 helicase superfamily c-terminal domain AOR13_2936 SM00387 Histidine kinase-like ATPases AOR13_2936 SM00388 His Kinase A (phosphoacceptor) domain AOR13_2936 SM00448 cheY-homologous receiver domain AOR13_2937 SM00267 diguanylate cyclase AOR13_2938 SM00448 cheY-homologous receiver domain AOR13_2942 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AOR13_2943 SM00342 helix_turn_helix, arabinose operon control protein AOR13_2944 SM01118 AOR13_2944 AOR13_2945 SM00287 Bacterial SH3 domain homologues AOR13_2946 SM00388 His Kinase A (phosphoacceptor) domain AOR13_2947 SM00448 cheY-homologous receiver domain AOR13_2947 SM00862 Transcriptional regulatory protein, C terminal AOR13_2952 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_2952 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_2952 SM01049 AOR13_2952 AOR13_2961 SM00257 Lysin motif AOR13_30 SM00116 Domain in cystathionine beta-synthase and other proteins. AOR13_3001 SM00360 RNA recognition motif AOR13_3006 SM00062 Bacterial periplasmic substrate-binding proteins AOR13_3012 SM01005 Alanine racemase, C-terminal domain AOR13_3023 SM00788 Adenylosuccinate synthetase AOR13_3033 SM01001 AIR carboxylase AOR13_3035 SM00387 Histidine kinase-like ATPases AOR13_3035 SM00388 His Kinase A (phosphoacceptor) domain AOR13_3035 SM00448 cheY-homologous receiver domain AOR13_3037 SM00357 Cold shock protein domain AOR13_3037 SM00382 ATPases associated with a variety of cellular activities AOR13_3037 SM00959 Rho termination factor, N-terminal domain AOR13_3039 SM00487 DEAD-like helicases superfamily AOR13_3039 SM00490 helicase superfamily c-terminal domain AOR13_3041 SM01004 Delta-aminolevulinic acid dehydratase AOR13_3042 SM00267 diguanylate cyclase AOR13_3053 SM00028 Tetratricopeptide repeats AOR13_3057 SM00479 AOR13_3057 AOR13_306 SM00450 Rhodanese Homology Domain AOR13_3067 SM00450 Rhodanese Homology Domain AOR13_3071 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_3071 SM00387 Histidine kinase-like ATPases AOR13_3071 SM00388 His Kinase A (phosphoacceptor) domain AOR13_3072 SM00448 cheY-homologous receiver domain AOR13_3072 SM00862 Transcriptional regulatory protein, C terminal AOR13_3077 SM00851 MGS-like domain AOR13_3078 SM00859 Semialdehyde dehydrogenase, NAD binding domain AOR13_3084 SM00052 Putative diguanylate phosphodiesterase AOR13_3086 SM00028 Tetratricopeptide repeats AOR13_3093 SM00919 Malic enzyme, NAD binding domain AOR13_3093 SM01274 AOR13_3093 AOR13_3095 SM00842 Cell division protein FtsA AOR13_3099 SM00965 Secretin and TonB N terminus short domain AOR13_31 SM00479 AOR13_31 AOR13_3116 SM01150 AOR13_3116 AOR13_3117 SM00052 Putative diguanylate phosphodiesterase AOR13_3117 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AOR13_3117 SM00267 diguanylate cyclase AOR13_3119 SM00434 DNA Topoisomerase IV AOR13_312 SM00458 Ricin-type beta-trefoil AOR13_312 SM00656 AOR13_312 AOR13_3120 SM00073 Histidine Phosphotransfer domain AOR13_3120 SM00387 Histidine kinase-like ATPases AOR13_3120 SM00388 His Kinase A (phosphoacceptor) domain AOR13_3120 SM00448 cheY-homologous receiver domain AOR13_3127 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AOR13_313 SM00346 helix_turn_helix isocitrate lyase regulation AOR13_3132 SM00938 Nitrogen regulatory protein P-II AOR13_3135 SM00342 helix_turn_helix, arabinose operon control protein AOR13_3141 SM00487 DEAD-like helicases superfamily AOR13_3141 SM00490 helicase superfamily c-terminal domain AOR13_3146 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_3146 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_3156 SM00322 K homology RNA-binding domain AOR13_3159 SM01382 AOR13_3159 AOR13_3159 SM01383 AOR13_3159 AOR13_3163 SM01403 AOR13_3163 AOR13_3164 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AOR13_3164 SM00382 ATPases associated with a variety of cellular activities AOR13_3165 SM00671 Sel1-like repeats. AOR13_3167 SM00855 Phosphoglycerate mutase family AOR13_3179 SM00354 helix_turn _helix lactose operon repressor AOR13_318 SM00530 Helix-turn-helix XRE-family like proteins AOR13_3183 SM00342 helix_turn_helix, arabinose operon control protein AOR13_3183 SM00387 Histidine kinase-like ATPases AOR13_3183 SM00388 His Kinase A (phosphoacceptor) domain AOR13_3183 SM00448 cheY-homologous receiver domain AOR13_3188 SM00354 helix_turn _helix lactose operon repressor AOR13_3193 SM00448 cheY-homologous receiver domain AOR13_3195 SM00138 Methyltransferase, chemotaxis proteins AOR13_3196 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AOR13_3196 SM00091 PAS domain AOR13_3196 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_3197 SM00260 Two component signalling adaptor domain AOR13_3198 SM00073 Histidine Phosphotransfer domain AOR13_3198 SM00260 Two component signalling adaptor domain AOR13_3198 SM00387 Histidine kinase-like ATPases AOR13_3198 SM01231 AOR13_3198 AOR13_3199 SM00448 cheY-homologous receiver domain AOR13_32 SM00267 diguanylate cyclase AOR13_32 SM00448 cheY-homologous receiver domain AOR13_3200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_3202 SM00448 cheY-homologous receiver domain AOR13_3202 SM00862 Transcriptional regulatory protein, C terminal AOR13_3203 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_3203 SM00387 Histidine kinase-like ATPases AOR13_3203 SM00388 His Kinase A (phosphoacceptor) domain AOR13_3211 SM00478 endonuclease III AOR13_3211 SM00525 AOR13_3211 AOR13_3216 SM00387 Histidine kinase-like ATPases AOR13_3217 SM00448 cheY-homologous receiver domain AOR13_3217 SM00862 Transcriptional regulatory protein, C terminal AOR13_3218 SM01038 Beta galactosidase small chain AOR13_3219 SM00342 helix_turn_helix, arabinose operon control protein AOR13_322 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AOR13_322 SM00091 PAS domain AOR13_322 SM00387 Histidine kinase-like ATPases AOR13_322 SM00388 His Kinase A (phosphoacceptor) domain AOR13_322 SM00448 cheY-homologous receiver domain AOR13_3222 SM00634 Bacterial Ig-like domain (group 1) AOR13_3226 SM00316 Ribosomal protein S1-like RNA-binding domain AOR13_3242 SM00965 Secretin and TonB N terminus short domain AOR13_3249 SM00420 helix_turn_helix, Deoxyribose operon repressor AOR13_3249 SM01134 AOR13_3249 AOR13_3260 SM01130 AOR13_3260 AOR13_3262 SM00073 Histidine Phosphotransfer domain AOR13_3262 SM00387 Histidine kinase-like ATPases AOR13_3262 SM00388 His Kinase A (phosphoacceptor) domain AOR13_3262 SM00448 cheY-homologous receiver domain AOR13_3263 SM00448 cheY-homologous receiver domain AOR13_3266 SM00382 ATPases associated with a variety of cellular activities AOR13_3268 SM00823 Phosphopantetheine attachment site AOR13_3270 SM00823 Phosphopantetheine attachment site AOR13_3271 SM00862 Transcriptional regulatory protein, C terminal AOR13_3285 SM00354 helix_turn _helix lactose operon repressor AOR13_3292 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AOR13_3301 SM00014 Acid phosphatase homologues AOR13_3309 SM00971 Serine acetyltransferase, N-terminal AOR13_331 SM00267 diguanylate cyclase AOR13_331 SM00448 cheY-homologous receiver domain AOR13_3311 SM00267 diguanylate cyclase AOR13_3311 SM00448 cheY-homologous receiver domain AOR13_3313 SM00924 MgtE intracellular N domain AOR13_3315 SM00341 Helicase and RNase D C-terminal AOR13_3315 SM00487 DEAD-like helicases superfamily AOR13_3315 SM00490 helicase superfamily c-terminal domain AOR13_3315 SM00956 AOR13_3315 AOR13_3319 SM00052 Putative diguanylate phosphodiesterase AOR13_3319 SM00267 diguanylate cyclase AOR13_3323 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_3330 SM00271 DnaJ molecular chaperone homology domain AOR13_3336 SM00028 Tetratricopeptide repeats AOR13_3336 SM00267 diguanylate cyclase AOR13_3343 SM00382 ATPases associated with a variety of cellular activities AOR13_3349 SM00487 DEAD-like helicases superfamily AOR13_3349 SM00490 helicase superfamily c-terminal domain AOR13_3352 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AOR13_3352 SM00954 Region found in RelA / SpoT proteins AOR13_3353 SM01409 AOR13_3353 AOR13_3354 SM00072 Guanylate kinase homologues. AOR13_3356 SM00267 diguanylate cyclase AOR13_3368 SM00729 Elongator protein 3, MiaB family, Radical SAM AOR13_337 SM00345 helix_turn_helix gluconate operon transcriptional repressor AOR13_337 SM00895 AOR13_337 AOR13_3381 SM00876 Biotin and Thiamin Synthesis associated domain AOR13_3387 SM00849 Metallo-beta-lactamase superfamily AOR13_3392 SM00382 ATPases associated with a variety of cellular activities AOR13_3398 SM00387 Histidine kinase-like ATPases AOR13_3398 SM00388 His Kinase A (phosphoacceptor) domain AOR13_3398 SM00448 cheY-homologous receiver domain AOR13_3399 SM00028 Tetratricopeptide repeats AOR13_34 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AOR13_340 SM00421 helix_turn_helix, Lux Regulon AOR13_340 SM00448 cheY-homologous receiver domain AOR13_3403 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AOR13_3405 SM00346 helix_turn_helix isocitrate lyase regulation AOR13_3421 SM00342 helix_turn_helix, arabinose operon control protein AOR13_3423 SM00989 AOR13_3423 AOR13_3430 SM00487 DEAD-like helicases superfamily AOR13_3432 SM00387 Histidine kinase-like ATPases AOR13_3441 SM00052 Putative diguanylate phosphodiesterase AOR13_3441 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AOR13_3441 SM00267 diguanylate cyclase AOR13_3448 SM00450 Rhodanese Homology Domain AOR13_3449 SM00829 Enoylreductase AOR13_3451 SM00052 Putative diguanylate phosphodiesterase AOR13_3451 SM00267 diguanylate cyclase AOR13_3458 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AOR13_3458 SM01232 AOR13_3458 AOR13_3478 SM00481 DNA polymerase alpha chain like domain AOR13_35 SM00028 Tetratricopeptide repeats AOR13_3502 SM00257 Lysin motif AOR13_3509 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AOR13_3509 SM00474 3'-5' exonuclease AOR13_3509 SM00475 5'-3' exonuclease AOR13_3509 SM00482 DNA polymerase A domain AOR13_3517 SM00836 DALR anticodon binding domain AOR13_3520 SM00387 Histidine kinase-like ATPases AOR13_3520 SM00433 TopoisomeraseII AOR13_3522 SM00480 DNA polymerase III beta subunit AOR13_3523 SM00382 ATPases associated with a variety of cellular activities AOR13_3523 SM00760 Bacterial dnaA protein helix-turn-helix domain AOR13_3526 SM01234 AOR13_3526 AOR13_3533 SM01228 AOR13_3533 AOR13_3536 SM00470 ParB-like nuclease domain AOR13_3543 SM00382 ATPases associated with a variety of cellular activities AOR13_3549 SM01144 AOR13_3549 AOR13_3550 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AOR13_3553 SM00354 helix_turn _helix lactose operon repressor AOR13_3578 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AOR13_3592 SM00382 ATPases associated with a variety of cellular activities AOR13_3597 SM00563 Phosphate acyltransferases AOR13_3614 SM00342 helix_turn_helix, arabinose operon control protein AOR13_3614 SM00871 Bacterial transcription activator, effector binding domain AOR13_362 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_362 SM00387 Histidine kinase-like ATPases AOR13_362 SM00388 His Kinase A (phosphoacceptor) domain AOR13_3620 SM00631 AOR13_3620 AOR13_3625 SM00316 Ribosomal protein S1-like RNA-binding domain AOR13_3625 SM00732 Likely ribonuclease with RNase H fold. AOR13_3629 SM00320 WD40 repeats AOR13_363 SM00448 cheY-homologous receiver domain AOR13_363 SM00862 Transcriptional regulatory protein, C terminal AOR13_3633 SM00382 ATPases associated with a variety of cellular activities AOR13_3641 SM00867 YceI-like domain AOR13_3648 SM00849 Metallo-beta-lactamase superfamily AOR13_365 SM00448 cheY-homologous receiver domain AOR13_3658 SM00382 ATPases associated with a variety of cellular activities AOR13_3661 SM00363 S4 RNA-binding domain AOR13_3666 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_3666 SM00387 Histidine kinase-like ATPases AOR13_3666 SM00388 His Kinase A (phosphoacceptor) domain AOR13_3667 SM00448 cheY-homologous receiver domain AOR13_3667 SM00862 Transcriptional regulatory protein, C terminal AOR13_367 SM00226 Low molecular weight phosphatase family AOR13_3676 SM01209 AOR13_3676 AOR13_3676 SM01210 AOR13_3676 AOR13_3678 SM00798 AICARFT/IMPCHase bienzyme AOR13_3678 SM00851 MGS-like domain AOR13_368 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AOR13_3683 SM00062 Bacterial periplasmic substrate-binding proteins AOR13_3689 SM00479 AOR13_3689 AOR13_3689 SM00990 AOR13_3689 AOR13_3693 SM00878 Biotin carboxylase C-terminal domain AOR13_3699 SM00883 Chaperonin 10 Kd subunit AOR13_3701 SM00052 Putative diguanylate phosphodiesterase AOR13_3701 SM00267 diguanylate cyclase AOR13_3707 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AOR13_3707 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AOR13_3714 SM00342 helix_turn_helix, arabinose operon control protein AOR13_3714 SM01009 AlkA N-terminal domain AOR13_3717 SM00267 diguanylate cyclase AOR13_3720 SM00420 helix_turn_helix, Deoxyribose operon repressor AOR13_3720 SM01134 AOR13_3720 AOR13_373 SM00421 helix_turn_helix, Lux Regulon AOR13_373 SM00448 cheY-homologous receiver domain AOR13_3732 SM00382 ATPases associated with a variety of cellular activities AOR13_3739 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_3739 SM00387 Histidine kinase-like ATPases AOR13_3739 SM00388 His Kinase A (phosphoacceptor) domain AOR13_3739 SM00448 cheY-homologous receiver domain AOR13_374 SM00829 Enoylreductase AOR13_3740 SM00267 diguanylate cyclase AOR13_3741 SM00829 Enoylreductase AOR13_3751 SM00867 YceI-like domain AOR13_3781 SM00841 Elongation factor P, C-terminal AOR13_3781 SM01185 AOR13_3781 AOR13_3788 SM00382 ATPases associated with a variety of cellular activities AOR13_379 SM00986 Uracil DNA glycosylase superfamily AOR13_379 SM00987 UreE urease accessory protein, C-terminal domain AOR13_3793 SM00382 ATPases associated with a variety of cellular activities AOR13_3794 SM00382 ATPases associated with a variety of cellular activities AOR13_3807 SM00345 helix_turn_helix gluconate operon transcriptional repressor AOR13_3807 SM00866 AOR13_3807 AOR13_3819 SM00382 ATPases associated with a variety of cellular activities AOR13_3823 SM00354 helix_turn _helix lactose operon repressor AOR13_3824 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_3825 SM00387 Histidine kinase-like ATPases AOR13_3828 SM00387 Histidine kinase-like ATPases AOR13_3828 SM00388 His Kinase A (phosphoacceptor) domain AOR13_3839 SM00382 ATPases associated with a variety of cellular activities AOR13_3851 SM00257 Lysin motif AOR13_3851 SM00646 AOR13_3851 AOR13_3852 SM01340 AOR13_3852 AOR13_3856 SM00244 prohibitin homologues AOR13_3857 SM00244 prohibitin homologues AOR13_3876 SM00487 DEAD-like helicases superfamily AOR13_3876 SM00490 helicase superfamily c-terminal domain AOR13_3878 SM00247 Beta/gamma crystallins AOR13_3888 SM00642 Alpha-amylase domain AOR13_389 SM01321 AOR13_389 AOR13_3893 SM00782 PhnA Zinc-Ribbon AOR13_3895 SM00487 DEAD-like helicases superfamily AOR13_3895 SM00490 helicase superfamily c-terminal domain AOR13_3900 SM00382 ATPases associated with a variety of cellular activities AOR13_3903 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AOR13_3903 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AOR13_3904 SM00649 Ribosomal protein L11/L12 AOR13_3909 SM00663 RNA polymerase I subunit A N-terminus AOR13_3912 SM00838 Elongation factor G C-terminus AOR13_3912 SM00889 Elongation factor G, domain IV AOR13_3925 SM00116 Domain in cystathionine beta-synthase and other proteins. AOR13_3928 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AOR13_3930 SM00387 Histidine kinase-like ATPases AOR13_3930 SM00388 His Kinase A (phosphoacceptor) domain AOR13_3931 SM00448 cheY-homologous receiver domain AOR13_3931 SM00862 Transcriptional regulatory protein, C terminal AOR13_3933 SM00382 ATPases associated with a variety of cellular activities AOR13_3936 SM00052 Putative diguanylate phosphodiesterase AOR13_395 SM00382 ATPases associated with a variety of cellular activities AOR13_3950 SM00382 ATPases associated with a variety of cellular activities AOR13_3950 SM00962 SRP54-type protein, GTPase domain AOR13_3950 SM00963 SRP54-type protein, helical bundle domain AOR13_3951 SM00382 ATPases associated with a variety of cellular activities AOR13_3953 SM00052 Putative diguanylate phosphodiesterase AOR13_3954 SM00052 Putative diguanylate phosphodiesterase AOR13_3965 SM00919 Malic enzyme, NAD binding domain AOR13_3965 SM01274 AOR13_3965 AOR13_3968 SM00487 DEAD-like helicases superfamily AOR13_3968 SM00490 helicase superfamily c-terminal domain AOR13_397 SM00732 Likely ribonuclease with RNase H fold. AOR13_3971 SM00382 ATPases associated with a variety of cellular activities AOR13_3971 SM01086 C-terminal, D2-small domain, of ClpB protein AOR13_3974 SM00421 helix_turn_helix, Lux Regulon AOR13_3975 SM00382 ATPases associated with a variety of cellular activities AOR13_3981 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AOR13_3983 SM00448 cheY-homologous receiver domain AOR13_3984 SM00387 Histidine kinase-like ATPases AOR13_3986 SM00448 cheY-homologous receiver domain AOR13_3993 SM00357 Cold shock protein domain AOR13_3996 SM00344 helix_turn_helix ASNC type AOR13_3997 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_4008 SM00671 Sel1-like repeats. AOR13_4011 SM00316 Ribosomal protein S1-like RNA-binding domain AOR13_4011 SM00357 Cold shock protein domain AOR13_4011 SM00955 AOR13_4011 AOR13_4012 SM00967 RNA 2'-O ribose methyltransferase substrate binding AOR13_4015 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AOR13_4015 SM00387 Histidine kinase-like ATPases AOR13_4015 SM00388 His Kinase A (phosphoacceptor) domain AOR13_4015 SM00448 cheY-homologous receiver domain AOR13_4016 SM01374 AOR13_4016 AOR13_4017 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AOR13_4030 SM00363 S4 RNA-binding domain AOR13_4030 SM01390 AOR13_4030 AOR13_4031 SM00662 RNA polymerases D AOR13_4057 SM00984 UDP binding domain AOR13_406 SM00387 Histidine kinase-like ATPases AOR13_407 SM00382 ATPases associated with a variety of cellular activities AOR13_407 SM00448 cheY-homologous receiver domain AOR13_410 SM00028 Tetratricopeptide repeats AOR13_410 SM00267 diguanylate cyclase AOR13_431 SM00864 Tubulin/FtsZ family, GTPase domain AOR13_431 SM00865 Tubulin/FtsZ family, C-terminal domain AOR13_434 SM00957 SecA DEAD-like domain AOR13_434 SM00958 SecA preprotein cross-linking domain AOR13_445 SM00644 AOR13_445 AOR13_448 SM00345 helix_turn_helix gluconate operon transcriptional repressor AOR13_448 SM00895 AOR13_448 AOR13_465 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AOR13_465 SM00387 Histidine kinase-like ATPases AOR13_465 SM00388 His Kinase A (phosphoacceptor) domain AOR13_465 SM00448 cheY-homologous receiver domain AOR13_469 SM01011 Aminopeptidase P, N-terminal domain AOR13_480 SM00640 Glycosyl hydrolases family 32 AOR13_482 SM00354 helix_turn _helix lactose operon repressor AOR13_492 SM01321 AOR13_492 AOR13_509 SM00327 von Willebrand factor (vWF) type A domain AOR13_511 SM00028 Tetratricopeptide repeats AOR13_514 SM00487 DEAD-like helicases superfamily AOR13_514 SM00490 helicase superfamily c-terminal domain AOR13_517 SM00342 helix_turn_helix, arabinose operon control protein AOR13_521 SM00090 RIO-like kinase AOR13_527 SM00245 tail specific protease AOR13_532 SM00345 helix_turn_helix gluconate operon transcriptional repressor AOR13_535 SM00862 Transcriptional regulatory protein, C terminal AOR13_539 SM00382 ATPases associated with a variety of cellular activities AOR13_543 SM00271 DnaJ molecular chaperone homology domain AOR13_548 SM00347 helix_turn_helix multiple antibiotic resistance protein AOR13_549 SM01322 AOR13_549 AOR13_55 SM00900 AOR13_55 AOR13_550 SM00487 DEAD-like helicases superfamily AOR13_550 SM00490 helicase superfamily c-terminal domain AOR13_553 SM00347 helix_turn_helix multiple antibiotic resistance protein AOR13_561 SM00382 ATPases associated with a variety of cellular activities AOR13_62 SM00849 Metallo-beta-lactamase superfamily AOR13_621 SM00642 Alpha-amylase domain AOR13_634 SM00028 Tetratricopeptide repeats AOR13_634 SM00267 diguanylate cyclase AOR13_64 SM00100 Cyclic nucleotide-monophosphate binding domain AOR13_65 SM00344 helix_turn_helix ASNC type AOR13_658 SM00060 Fibronectin type 3 domain AOR13_658 SM00631 AOR13_658 AOR13_663 SM00422 helix_turn_helix, mercury resistance AOR13_673 SM00822 AOR13_673 AOR13_682 SM00220 Serine/Threonine protein kinases, catalytic domain AOR13_683 SM00342 helix_turn_helix, arabinose operon control protein AOR13_684 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AOR13_689 SM00967 RNA 2'-O ribose methyltransferase substrate binding AOR13_692 SM00460 Transglutaminase/protease-like homologues AOR13_699 SM00354 helix_turn _helix lactose operon repressor AOR13_702 SM00052 Putative diguanylate phosphodiesterase AOR13_702 SM00267 diguanylate cyclase AOR13_715 SM00382 ATPases associated with a variety of cellular activities AOR13_72 SM00849 Metallo-beta-lactamase superfamily AOR13_740 SM00028 Tetratricopeptide repeats AOR13_75 SM00052 Putative diguanylate phosphodiesterase AOR13_75 SM00267 diguanylate cyclase AOR13_750 SM00260 Two component signalling adaptor domain AOR13_750 SM00448 cheY-homologous receiver domain AOR13_751 SM00098 Alkaline phosphatase homologues AOR13_765 SM01323 AOR13_765 AOR13_769 SM00052 Putative diguanylate phosphodiesterase AOR13_769 SM00267 diguanylate cyclase AOR13_769 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AOR13_770 SM00850 LytTr DNA-binding domain AOR13_778 SM00382 ATPases associated with a variety of cellular activities AOR13_784 SM00562 AOR13_784 AOR13_786 SM00028 Tetratricopeptide repeats AOR13_786 SM00257 Lysin motif AOR13_787 SM00530 Helix-turn-helix XRE-family like proteins AOR13_791 SM00564 beta-propeller repeat AOR13_792 SM00382 ATPases associated with a variety of cellular activities AOR13_796 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AOR13_811 SM00382 ATPases associated with a variety of cellular activities AOR13_811 SM00994 ClpX C4-type zinc finger AOR13_811 SM01086 C-terminal, D2-small domain, of ClpB protein AOR13_814 SM00382 ATPases associated with a variety of cellular activities AOR13_814 SM00464 Found in ATP-dependent protease La (LON) AOR13_815 SM00411 bacterial (prokaryotic) histone like domain AOR13_820 SM00563 Phosphate acyltransferases AOR13_829 SM00904 Riboflavin kinase AOR13_846 SM00938 Nitrogen regulatory protein P-II AOR13_858 SM00838 Elongation factor G C-terminus AOR13_860 SM00358 Double-stranded RNA binding motif AOR13_860 SM00535 Ribonuclease III family AOR13_867 SM00382 ATPases associated with a variety of cellular activities AOR13_869 SM00382 ATPases associated with a variety of cellular activities AOR13_880 SM00861 Transketolase, pyrimidine binding domain AOR13_895 SM00363 S4 RNA-binding domain AOR13_897 SM00382 ATPases associated with a variety of cellular activities AOR13_897 SM01086 C-terminal, D2-small domain, of ClpB protein AOR13_898 SM00028 Tetratricopeptide repeats AOR13_907 SM00054 EF-hand, calcium binding motif AOR13_908 SM00091 PAS domain AOR13_908 SM00267 diguanylate cyclase AOR13_911 SM00862 Transcriptional regulatory protein, C terminal AOR13_916 SM00382 ATPases associated with a variety of cellular activities AOR13_922 SM00493 AOR13_922 AOR13_923 SM00387 Histidine kinase-like ATPases AOR13_929 SM00849 Metallo-beta-lactamase superfamily AOR13_931 SM00448 cheY-homologous receiver domain AOR13_931 SM00862 Transcriptional regulatory protein, C terminal AOR13_932 SM00387 Histidine kinase-like ATPases AOR13_932 SM00388 His Kinase A (phosphoacceptor) domain AOR13_941 SM01236 AOR13_941 AOR13_963 SM00642 Alpha-amylase domain AOR13_965 SM00487 DEAD-like helicases superfamily AOR13_965 SM00488 AOR13_965 AOR13_965 SM00491 AOR13_965 AOR13_972 SM00341 Helicase and RNase D C-terminal AOR13_972 SM00474 3'-5' exonuclease AOR13_980 SM00345 helix_turn_helix gluconate operon transcriptional repressor AOR13_998 SM00422 helix_turn_helix, mercury resistance