locus-tag class description AVL56_00005 PF00308 Bacterial dnaA protein AVL56_00005 PF08299 Bacterial dnaA protein helix-turn-helix AVL56_00005 PF11638 DnaA N-terminal domain AVL56_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AVL56_00010 PF02767 DNA polymerase III beta subunit, central domain AVL56_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AVL56_00015 PF02463 RecF/RecN/SMC N terminal domain AVL56_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_00020 PF18053 DNA gyrase B subunit insert domain AVL56_00020 PF01751 Toprim domain AVL56_00020 PF00204 DNA gyrase B AVL56_00020 PF00986 DNA gyrase B subunit, carboxyl terminus AVL56_00035 PF05746 DALR anticodon binding domain AVL56_00035 PF02092 Glycyl-tRNA synthetase beta subunit AVL56_00040 PF02091 Glycyl-tRNA synthetase alpha subunit AVL56_00045 PF03352 Methyladenine glycosylase AVL56_00055 PF04220 Der GTPase activator (YihI) AVL56_00060 PF00034 Cytochrome c AVL56_00065 PF01926 50S ribosome-binding GTPase AVL56_00070 PF00476 DNA polymerase family A AVL56_00070 PF01367 5'-3' exonuclease, C-terminal SAM fold AVL56_00070 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AVL56_00070 PF01612 3'-5' exonuclease AVL56_00080 PF02386 Cation transport protein AVL56_00085 PF02080 TrkA-C domain AVL56_00085 PF02254 TrkA-N domain AVL56_00090 PF01189 16S rRNA methyltransferase RsmB/F AVL56_00090 PF01029 NusB family AVL56_00095 PF02911 Formyl transferase, C-terminal domain AVL56_00095 PF00551 Formyl transferase AVL56_00100 PF01327 Polypeptide deformylase AVL56_00110 PF02481 DNA recombination-mediator protein A AVL56_00110 PF17782 DprA winged helix domain AVL56_00115 PF04361 Protein of unknown function (DUF494) AVL56_00125 PF01300 Telomere recombination AVL56_00130 PF01218 Coproporphyrinogen III oxidase AVL56_00135 PF03922 OmpW family AVL56_00140 PF01152 Bacterial-like globin AVL56_00145 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AVL56_00145 PF01488 Shikimate / quinate 5-dehydrogenase AVL56_00145 PF08501 Shikimate dehydrogenase substrate binding domain AVL56_00150 PF00132 Bacterial transferase hexapeptide (six repeats) AVL56_00190 PF07733 Bacterial DNA polymerase III alpha NTPase domain AVL56_00190 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AVL56_00190 PF14579 Helix-hairpin-helix motif AVL56_00190 PF02811 PHP domain AVL56_00190 PF01336 OB-fold nucleic acid binding domain AVL56_00200 PF00154 recA bacterial DNA recombination protein AVL56_00220 PF02225 PA domain AVL56_00220 PF04389 Peptidase family M28 AVL56_00230 PF00440 Bacterial regulatory proteins, tetR family AVL56_00235 PF04127 DNA / pantothenate metabolism flavoprotein AVL56_00235 PF02441 Flavoprotein AVL56_00240 PF04002 RadC-like JAB domain AVL56_00260 PF06082 Exopolysaccharide biosynthesis protein YbjH AVL56_00265 PF01467 Cytidylyltransferase-like AVL56_00270 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AVL56_00275 PF00830 Ribosomal L28 family AVL56_00280 PF00471 Ribosomal protein L33 AVL56_00290 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AVL56_00290 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AVL56_00290 PF06827 Zinc finger found in FPG and IleRS AVL56_00295 PF01467 Cytidylyltransferase-like AVL56_00305 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AVL56_00320 PF00563 EAL domain AVL56_00320 PF00990 Diguanylate cyclase, GGDEF domain AVL56_00320 PF03707 Bacterial signalling protein N terminal repeat AVL56_00325 PF00155 Aminotransferase class I and II AVL56_00330 PF00107 Zinc-binding dehydrogenase AVL56_00330 PF08240 Alcohol dehydrogenase GroES-like domain AVL56_00335 PF00581 Rhodanese-like domain AVL56_00340 PF01694 Rhomboid family AVL56_00340 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AVL56_00350 PF04345 Chorismate lyase AVL56_00355 PF01040 UbiA prenyltransferase family AVL56_00360 PF04380 Membrane fusogenic activity AVL56_00365 PF13361 UvrD-like helicase C-terminal domain AVL56_00365 PF00580 UvrD/REP helicase N-terminal domain AVL56_00370 PF00563 EAL domain AVL56_00370 PF00990 Diguanylate cyclase, GGDEF domain AVL56_00370 PF03707 Bacterial signalling protein N terminal repeat AVL56_00375 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVL56_00390 PF02463 RecF/RecN/SMC N terminal domain AVL56_00395 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AVL56_00400 PF05840 Bacteriophage replication gene A protein (GPA) AVL56_00430 PF00589 Phage integrase family AVL56_00435 PF03553 Na+/H+ antiporter family AVL56_00450 PF01751 Toprim domain AVL56_00450 PF01131 DNA topoisomerase AVL56_00450 PF01396 Topoisomerase DNA binding C4 zinc finger AVL56_00460 PF02652 L-lactate permease AVL56_00480 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL56_00495 PF12833 Helix-turn-helix domain AVL56_00495 PF01965 DJ-1/PfpI family AVL56_00500 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AVL56_00500 PF00355 Rieske [2Fe-2S] domain AVL56_00510 PF00970 Oxidoreductase FAD-binding domain AVL56_00510 PF00175 Oxidoreductase NAD-binding domain AVL56_00510 PF00042 Globin AVL56_00515 PF00464 Serine hydroxymethyltransferase AVL56_00520 PF01266 FAD dependent oxidoreductase AVL56_00525 PF04267 Sarcosine oxidase, delta subunit family AVL56_00530 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_00530 PF08669 Glycine cleavage T-protein C-terminal barrel domain AVL56_00530 PF01571 Aminomethyltransferase folate-binding domain AVL56_00530 PF17806 Sarcosine oxidase A3 domain AVL56_00540 PF00551 Formyl transferase AVL56_00550 PF02028 BCCT, betaine/carnitine/choline family transporter AVL56_00555 PF03315 Serine dehydratase beta chain AVL56_00555 PF03313 Serine dehydratase alpha chain AVL56_00560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_00560 PF03466 LysR substrate binding domain AVL56_00575 PF00171 Aldehyde dehydrogenase family AVL56_00580 PF13378 Enolase C-terminal domain-like AVL56_00580 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AVL56_00585 PF05199 GMC oxidoreductase AVL56_00585 PF00732 GMC oxidoreductase AVL56_00590 PF00171 Aldehyde dehydrogenase family AVL56_00595 PF07715 TonB-dependent Receptor Plug Domain AVL56_00595 PF00593 TonB dependent receptor AVL56_00600 PF13181 Tetratricopeptide repeat AVL56_00605 PF00672 HAMP domain AVL56_00605 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVL56_00605 PF00072 Response regulator receiver domain AVL56_00605 PF01627 Hpt domain AVL56_00605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_00605 PF00512 His Kinase A (phospho-acceptor) domain AVL56_00610 PF00593 TonB dependent receptor AVL56_00610 PF07715 TonB-dependent Receptor Plug Domain AVL56_00615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_00615 PF03466 LysR substrate binding domain AVL56_00620 PF00171 Aldehyde dehydrogenase family AVL56_00625 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AVL56_00625 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVL56_00630 PF13533 Biotin-lipoyl like AVL56_00635 PF00005 ABC transporter AVL56_00650 PF02770 Acyl-CoA dehydrogenase, middle domain AVL56_00650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL56_00650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL56_00655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_00655 PF03466 LysR substrate binding domain AVL56_00660 PF00753 Metallo-beta-lactamase superfamily AVL56_00665 PF02627 Carboxymuconolactone decarboxylase family AVL56_00670 PF04317 YcjX-like family, DUF463 AVL56_00690 PF04055 Radical SAM superfamily AVL56_00690 PF06968 Biotin and Thiamin Synthesis associated domain AVL56_00695 PF05690 Thiazole biosynthesis protein ThiG AVL56_00705 PF00899 ThiF family AVL56_00710 PF02581 Thiamine monophosphate synthase AVL56_00715 PF13667 ThiC-associated domain AVL56_00715 PF01964 Radical SAM ThiC family AVL56_00720 PF00593 TonB dependent receptor AVL56_00720 PF07715 TonB-dependent Receptor Plug Domain AVL56_00725 PF00296 Luciferase-like monooxygenase AVL56_00735 PF00881 Nitroreductase family AVL56_00735 PF01996 F420-0:Gamma-glutamyl ligase AVL56_00745 PF01933 Uncharacterised protein family UPF0052 AVL56_00750 PF04055 Radical SAM superfamily AVL56_00755 PF04055 Radical SAM superfamily AVL56_00760 PF08362 YcdC-like protein, C-terminal region AVL56_00760 PF00440 Bacterial regulatory proteins, tetR family AVL56_00765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_00765 PF03466 LysR substrate binding domain AVL56_00770 PF00202 Aminotransferase class-III AVL56_00775 PF00171 Aldehyde dehydrogenase family AVL56_00780 PF07687 Peptidase dimerisation domain AVL56_00780 PF01546 Peptidase family M20/M25/M40 AVL56_00785 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AVL56_00790 PF01979 Amidohydrolase family AVL56_00795 PF07219 HemY protein N-terminus AVL56_00795 PF07719 Tetratricopeptide repeat AVL56_00800 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AVL56_00810 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AVL56_00810 PF03900 Porphobilinogen deaminase, C-terminal domain AVL56_00815 PF00072 Response regulator receiver domain AVL56_00815 PF00990 Diguanylate cyclase, GGDEF domain AVL56_00825 PF00625 Guanylate kinase AVL56_00830 PF01192 RNA polymerase Rpb6 AVL56_00835 PF13291 ACT domain AVL56_00835 PF04607 Region found in RelA / SpoT proteins AVL56_00835 PF02824 TGS domain AVL56_00840 PF01042 Endoribonuclease L-PSP AVL56_00845 PF12105 SpoU, rRNA methylase, C-terminal AVL56_00845 PF00588 SpoU rRNA Methylase family AVL56_00850 PF00270 DEAD/DEAH box helicase AVL56_00850 PF17191 RecG wedge domain AVL56_00850 PF00271 Helicase conserved C-terminal domain AVL56_00855 PF04445 Putative SAM-dependent methyltransferase AVL56_00860 PF00462 Glutaredoxin AVL56_00860 PF08534 Redoxin AVL56_00880 PF00528 Binding-protein-dependent transport system inner membrane component AVL56_00885 PF00005 ABC transporter AVL56_00885 PF08402 TOBE domain AVL56_00890 PF00563 EAL domain AVL56_00890 PF00990 Diguanylate cyclase, GGDEF domain AVL56_00890 PF03707 Bacterial signalling protein N terminal repeat AVL56_00905 PF05552 Conserved TM helix AVL56_00905 PF00924 Mechanosensitive ion channel AVL56_00930 PF13426 PAS domain AVL56_00930 PF00563 EAL domain AVL56_00930 PF00990 Diguanylate cyclase, GGDEF domain AVL56_00930 PF08448 PAS fold AVL56_00930 PF08447 PAS fold AVL56_00930 PF05231 MASE1 AVL56_00940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_00940 PF03466 LysR substrate binding domain AVL56_00945 PF01810 LysE type translocator AVL56_00950 PF00893 Small Multidrug Resistance protein AVL56_00965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL56_00965 PF00529 HlyD membrane-fusion protein of T1SS AVL56_00970 PF00873 AcrB/AcrD/AcrF family AVL56_00980 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AVL56_00980 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AVL56_00985 PF00850 Histone deacetylase domain AVL56_00995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_00995 PF12729 Four helix bundle sensory module for signal transduction AVL56_00995 PF00672 HAMP domain AVL56_01000 PF01544 CorA-like Mg2+ transporter protein AVL56_01005 PF11737 Protein of unknown function (DUF3300) AVL56_01010 PF00925 GTP cyclohydrolase II AVL56_01015 PF00563 EAL domain AVL56_01015 PF00990 Diguanylate cyclase, GGDEF domain AVL56_01015 PF08448 PAS fold AVL56_01025 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AVL56_01035 PF09382 RQC domain AVL56_01035 PF16124 RecQ zinc-binding AVL56_01035 PF00271 Helicase conserved C-terminal domain AVL56_01035 PF00270 DEAD/DEAH box helicase AVL56_01035 PF00570 HRDC domain AVL56_01040 PF03061 Thioesterase superfamily AVL56_01045 PF00571 CBS domain AVL56_01045 PF01769 Divalent cation transporter AVL56_01045 PF03448 MgtE intracellular N domain AVL56_01050 PF00892 EamA-like transporter family AVL56_01055 PF00072 Response regulator receiver domain AVL56_01055 PF00990 Diguanylate cyclase, GGDEF domain AVL56_01060 PF00580 UvrD/REP helicase N-terminal domain AVL56_01060 PF13361 UvrD-like helicase C-terminal domain AVL56_01065 PF06426 Serine acetyltransferase, N-terminal AVL56_01065 PF00132 Bacterial transferase hexapeptide (six repeats) AVL56_01070 PF13419 Haloacid dehalogenase-like hydrolase AVL56_01075 PF00589 Phage integrase family AVL56_01075 PF02899 Phage integrase, N-terminal SAM-like domain AVL56_01085 PF01678 Diaminopimelate epimerase AVL56_01090 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AVL56_01090 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AVL56_01105 PF01569 PAP2 superfamily AVL56_01110 PF03737 Aldolase/RraA AVL56_01120 PF02441 Flavoprotein AVL56_01125 PF08245 Mur ligase middle domain AVL56_01125 PF02875 Mur ligase family, glutamate ligase domain AVL56_01125 PF01225 Mur ligase family, catalytic domain AVL56_01130 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AVL56_01135 PF00719 Inorganic pyrophosphatase AVL56_01160 PF17760 UvrA interaction domain AVL56_01160 PF00005 ABC transporter AVL56_01160 PF17755 UvrA DNA-binding domain AVL56_01165 PF07690 Major Facilitator Superfamily AVL56_01170 PF13419 Haloacid dehalogenase-like hydrolase AVL56_01180 PF00356 Bacterial regulatory proteins, lacI family AVL56_01190 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AVL56_01190 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AVL56_01195 PF10509 Galactokinase galactose-binding signature AVL56_01195 PF08544 GHMP kinases C terminal AVL56_01195 PF00288 GHMP kinases N terminal domain AVL56_01200 PF00474 Sodium:solute symporter family AVL56_01205 PF00436 Single-strand binding protein family AVL56_01220 PF00486 Transcriptional regulatory protein, C terminal AVL56_01220 PF00072 Response regulator receiver domain AVL56_01225 PF00072 Response regulator receiver domain AVL56_01225 PF00512 His Kinase A (phospho-acceptor) domain AVL56_01225 PF09456 RcsC Alpha-Beta-Loop (ABL) AVL56_01225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_01230 PF00563 EAL domain AVL56_01230 PF08668 HDOD domain AVL56_01255 PF16875 Glycosyl hydrolase family 36 N-terminal domain AVL56_01255 PF16874 Glycosyl hydrolase family 36 C-terminal domain AVL56_01260 PF00474 Sodium:solute symporter family AVL56_01270 PF04820 Tryptophan halogenase AVL56_01280 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AVL56_01280 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AVL56_01285 PF00455 DeoR C terminal sensor domain AVL56_01285 PF08220 DeoR-like helix-turn-helix domain AVL56_01290 PF01266 FAD dependent oxidoreductase AVL56_01290 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AVL56_01320 PF03958 Bacterial type II/III secretion system short domain AVL56_01320 PF00263 Bacterial type II and III secretion system protein AVL56_01325 PF01471 Putative peptidoglycan binding domain AVL56_01325 PF13401 AAA domain AVL56_01335 PF00437 Type II/IV secretion system protein AVL56_01335 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AVL56_01340 PF00482 Type II secretion system (T2SS), protein F AVL56_01350 PF07963 Prokaryotic N-terminal methylation motif AVL56_01355 PF07963 Prokaryotic N-terminal methylation motif AVL56_01385 PF04085 rod shape-determining protein MreC AVL56_01390 PF04093 rod shape-determining protein MreD AVL56_01395 PF02545 Maf-like protein AVL56_01400 PF10150 Ribonuclease E/G family AVL56_01400 PF00575 S1 RNA binding domain AVL56_01410 PF00795 Carbon-nitrogen hydrolase AVL56_01415 PF01523 Putative modulator of DNA gyrase AVL56_01425 PF04751 Protein of unknown function (DUF615) AVL56_01430 PF01523 Putative modulator of DNA gyrase AVL56_01440 PF02837 Glycosyl hydrolases family 2, sugar binding domain AVL56_01440 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AVL56_01440 PF00703 Glycosyl hydrolases family 2 AVL56_01440 PF16353 Domain of unknown function(DUF4981) AVL56_01440 PF02929 Beta galactosidase small chain AVL56_01445 PF00486 Transcriptional regulatory protein, C terminal AVL56_01445 PF00072 Response regulator receiver domain AVL56_01450 PF00512 His Kinase A (phospho-acceptor) domain AVL56_01450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_01450 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL56_01455 PF08323 Starch synthase catalytic domain AVL56_01455 PF00534 Glycosyl transferases group 1 AVL56_01460 PF08468 Methyltransferase small domain N-terminal AVL56_01460 PF05175 Methyltransferase small domain AVL56_01465 PF02390 Putative methyltransferase AVL56_01475 PF10576 Iron-sulfur binding domain of endonuclease III AVL56_01475 PF14815 NUDIX domain AVL56_01475 PF00730 HhH-GPD superfamily base excision DNA repair protein AVL56_01475 PF00633 Helix-hairpin-helix motif AVL56_01480 PF04362 Bacterial Fe(2+) trafficking AVL56_01510 PF16750 Sensor domain of 2-component histidine kinase AVL56_01510 PF00512 His Kinase A (phospho-acceptor) domain AVL56_01510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_01510 PF00672 HAMP domain AVL56_01515 PF00486 Transcriptional regulatory protein, C terminal AVL56_01515 PF00072 Response regulator receiver domain AVL56_01525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_01525 PF00672 HAMP domain AVL56_01525 PF17200 Single Cache domain 2 AVL56_01530 PF00072 Response regulator receiver domain AVL56_01535 PF09078 CheY binding AVL56_01535 PF01627 Hpt domain AVL56_01535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_01535 PF01584 CheW-like domain AVL56_01535 PF02895 Signal transducing histidine kinase, homodimeric domain AVL56_01540 PF01584 CheW-like domain AVL56_01545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_01545 PF13426 PAS domain AVL56_01545 PF08447 PAS fold AVL56_01550 PF01739 CheR methyltransferase, SAM binding domain AVL56_01550 PF03705 CheR methyltransferase, all-alpha domain AVL56_01555 PF03975 CheD chemotactic sensory transduction AVL56_01560 PF01339 CheB methylesterase AVL56_01560 PF00072 Response regulator receiver domain AVL56_01575 PF01435 Peptidase family M48 AVL56_01590 PF00072 Response regulator receiver domain AVL56_01590 PF13426 PAS domain AVL56_01590 PF08448 PAS fold AVL56_01590 PF00512 His Kinase A (phospho-acceptor) domain AVL56_01590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_01610 PF00356 Bacterial regulatory proteins, lacI family AVL56_01615 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVL56_01615 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AVL56_01625 PF03825 Nucleoside H+ symporter AVL56_01635 PF05199 GMC oxidoreductase AVL56_01635 PF00732 GMC oxidoreductase AVL56_01680 PF00465 Iron-containing alcohol dehydrogenase AVL56_01685 PF00300 Histidine phosphatase superfamily (branch 1) AVL56_01690 PF00694 Aconitase C-terminal domain AVL56_01690 PF00330 Aconitase family (aconitate hydratase) AVL56_01700 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AVL56_01700 PF00437 Type II/IV secretion system protein AVL56_01705 PF00338 Ribosomal protein S10p/S20e AVL56_01710 PF00297 Ribosomal protein L3 AVL56_01715 PF00573 Ribosomal protein L4/L1 family AVL56_01720 PF00276 Ribosomal protein L23 AVL56_01725 PF00181 Ribosomal Proteins L2, RNA binding domain AVL56_01725 PF03947 Ribosomal Proteins L2, C-terminal domain AVL56_01730 PF00203 Ribosomal protein S19 AVL56_01735 PF00237 Ribosomal protein L22p/L17e AVL56_01740 PF07650 KH domain AVL56_01740 PF00189 Ribosomal protein S3, C-terminal domain AVL56_01745 PF00252 Ribosomal protein L16p/L10e AVL56_01750 PF00831 Ribosomal L29 protein AVL56_01755 PF00366 Ribosomal protein S17 AVL56_01760 PF13439 Glycosyltransferase Family 4 AVL56_01760 PF00534 Glycosyl transferases group 1 AVL56_01765 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AVL56_01770 PF00534 Glycosyl transferases group 1 AVL56_01770 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AVL56_01790 PF00672 HAMP domain AVL56_01790 PF02743 Cache domain AVL56_01790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_01795 PF01432 Peptidase family M3 AVL56_01805 PF00551 Formyl transferase AVL56_01805 PF01842 ACT domain AVL56_01815 PF00270 DEAD/DEAH box helicase AVL56_01815 PF04408 Helicase associated domain (HA2) AVL56_01815 PF00271 Helicase conserved C-terminal domain AVL56_01815 PF08482 ATP-dependent helicase C-terminal AVL56_01820 PF13406 Transglycosylase SLT domain AVL56_01830 PF00912 Transglycosylase AVL56_01830 PF00905 Penicillin binding protein transpeptidase domain AVL56_01830 PF14814 Bifunctional transglycosylase second domain AVL56_01840 PF05661 Protein of unknown function (DUF808) AVL56_01860 PF00543 Nitrogen regulatory protein P-II AVL56_01865 PF00909 Ammonium Transporter Family AVL56_01875 PF04261 Dyp-type peroxidase family AVL56_01880 PF00211 Adenylate and Guanylate cyclase catalytic domain AVL56_01880 PF00672 HAMP domain AVL56_01885 PF00202 Aminotransferase class-III AVL56_01890 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AVL56_01890 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AVL56_01895 PF00440 Bacterial regulatory proteins, tetR family AVL56_01905 PF00873 AcrB/AcrD/AcrF family AVL56_01915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_01915 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVL56_01915 PF00672 HAMP domain AVL56_01915 PF00072 Response regulator receiver domain AVL56_01915 PF01627 Hpt domain AVL56_01915 PF00512 His Kinase A (phospho-acceptor) domain AVL56_01920 PF00521 DNA gyrase/topoisomerase IV, subunit A AVL56_01920 PF03989 DNA gyrase C-terminal domain, beta-propeller AVL56_01930 PF00563 EAL domain AVL56_01930 PF00990 Diguanylate cyclase, GGDEF domain AVL56_01930 PF03707 Bacterial signalling protein N terminal repeat AVL56_01940 PF00171 Aldehyde dehydrogenase family AVL56_01945 PF04958 Arginine N-succinyltransferase beta subunit AVL56_01950 PF00202 Aminotransferase class-III AVL56_01960 PF00117 Glutamine amidotransferase class-I AVL56_01965 PF00579 tRNA synthetases class I (W and Y) AVL56_01970 PF00834 Ribulose-phosphate 3 epimerase family AVL56_01990 PF02086 D12 class N6 adenine-specific DNA methyltransferase AVL56_02000 PF01761 3-dehydroquinate synthase AVL56_02005 PF01202 Shikimate kinase AVL56_02010 PF11741 AMIN domain AVL56_02010 PF00263 Bacterial type II and III secretion system protein AVL56_02010 PF03958 Bacterial type II/III secretion system short domain AVL56_02010 PF07660 Secretin and TonB N terminus short domain AVL56_02020 PF04350 Pilus assembly protein, PilO AVL56_02025 PF05137 Fimbrial assembly protein (PilN) AVL56_02030 PF11104 Type IV pilus assembly protein PilM; AVL56_02035 PF00905 Penicillin binding protein transpeptidase domain AVL56_02035 PF00912 Transglycosylase AVL56_02035 PF17092 Penicillin-binding protein OB-like domain AVL56_02040 PF00390 Malic enzyme, N-terminal domain AVL56_02040 PF03949 Malic enzyme, NAD binding domain AVL56_02045 PF02798 Glutathione S-transferase, N-terminal domain AVL56_02080 PF03707 Bacterial signalling protein N terminal repeat AVL56_02080 PF00990 Diguanylate cyclase, GGDEF domain AVL56_02080 PF00563 EAL domain AVL56_02085 PF00583 Acetyltransferase (GNAT) family AVL56_02085 PF00696 Amino acid kinase family AVL56_02090 PF00206 Lyase AVL56_02090 PF14698 Argininosuccinate lyase C-terminal AVL56_02095 PF00764 Arginosuccinate synthase AVL56_02100 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AVL56_02100 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AVL56_02105 PF00696 Amino acid kinase family AVL56_02110 PF02774 Semialdehyde dehydrogenase, dimerisation domain AVL56_02110 PF01118 Semialdehyde dehydrogenase, NAD binding domain AVL56_02115 PF02142 MGS-like domain AVL56_02125 PF02107 Flagellar L-ring protein AVL56_02140 PF00072 Response regulator receiver domain AVL56_02140 PF00486 Transcriptional regulatory protein, C terminal AVL56_02145 PF00672 HAMP domain AVL56_02145 PF00512 His Kinase A (phospho-acceptor) domain AVL56_02145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_02145 PF16527 Two-component sensor protein CpxA, periplasmic domain AVL56_02150 PF12146 Serine aminopeptidase, S33 AVL56_02155 PF00588 SpoU rRNA Methylase family AVL56_02160 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AVL56_02160 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AVL56_02165 PF02556 Preprotein translocase subunit SecB AVL56_02170 PF00462 Glutaredoxin AVL56_02180 PF01551 Peptidase family M23 AVL56_02190 PF04748 Divergent polysaccharide deacetylase AVL56_02200 PF03009 Glycerophosphoryl diester phosphodiesterase family AVL56_02210 PF02666 Phosphatidylserine decarboxylase AVL56_02215 PF03193 RsgA GTPase AVL56_02220 PF00929 Exonuclease AVL56_02235 PF07715 TonB-dependent Receptor Plug Domain AVL56_02235 PF00593 TonB dependent receptor AVL56_02240 PF13181 Tetratricopeptide repeat AVL56_02255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVL56_02255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVL56_02255 PF00205 Thiamine pyrophosphate enzyme, central domain AVL56_02260 PF10369 Small subunit of acetolactate synthase AVL56_02270 PF02416 mttA/Hcf106 family AVL56_02275 PF02416 mttA/Hcf106 family AVL56_02280 PF00902 Sec-independent protein translocase protein (TatC) AVL56_02290 PF01026 TatD related DNase AVL56_02295 PF00990 Diguanylate cyclase, GGDEF domain AVL56_02300 PF00490 Delta-aminolevulinic acid dehydratase AVL56_02305 PF02541 Ppx/GppA phosphatase family AVL56_02310 PF00270 DEAD/DEAH box helicase AVL56_02310 PF00271 Helicase conserved C-terminal domain AVL56_02315 PF00085 Thioredoxin AVL56_02320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVL56_02320 PF07498 Rho termination factor, N-terminal domain AVL56_02320 PF07497 Rho termination factor, RNA-binding domain AVL56_02325 PF07687 Peptidase dimerisation domain AVL56_02325 PF01546 Peptidase family M20/M25/M40 AVL56_02330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_02330 PF00512 His Kinase A (phospho-acceptor) domain AVL56_02330 PF09308 LuxQ, periplasmic AVL56_02330 PF00072 Response regulator receiver domain AVL56_02335 PF06965 Na+/H+ antiporter 1 AVL56_02340 PF00731 AIR carboxylase AVL56_02345 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AVL56_02345 PF02222 ATP-grasp domain AVL56_02360 PF00210 Ferritin-like domain AVL56_02365 PF07995 Glucose / Sorbosone dehydrogenase AVL56_02375 PF00085 Thioredoxin AVL56_02385 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AVL56_02390 PF00709 Adenylosuccinate synthetase AVL56_02395 PF00171 Aldehyde dehydrogenase family AVL56_02410 PF03553 Na+/H+ antiporter family AVL56_02415 PF00933 Glycosyl hydrolase family 3 N terminal domain AVL56_02435 PF07075 Protein of unknown function (DUF1343) AVL56_02440 PF01380 SIS domain AVL56_02445 PF00842 Alanine racemase, C-terminal domain AVL56_02445 PF01168 Alanine racemase, N-terminal domain AVL56_02460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL56_02475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_02475 PF12729 Four helix bundle sensory module for signal transduction AVL56_02475 PF00672 HAMP domain AVL56_02495 PF00583 Acetyltransferase (GNAT) family AVL56_02505 PF03358 NADPH-dependent FMN reductase AVL56_02535 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AVL56_02540 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AVL56_02635 PF00550 Phosphopantetheine attachment site AVL56_02685 PF13495 Phage integrase, N-terminal SAM-like domain AVL56_02685 PF00589 Phage integrase family AVL56_02690 PF00108 Thiolase, N-terminal domain AVL56_02690 PF02803 Thiolase, C-terminal domain AVL56_02695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVL56_02695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVL56_02695 PF00378 Enoyl-CoA hydratase/isomerase AVL56_02700 PF14718 Soluble lytic murein transglycosylase L domain AVL56_02700 PF01464 Transglycosylase SLT domain AVL56_02705 PF00557 Metallopeptidase family M24 AVL56_02715 PF00348 Polyprenyl synthetase AVL56_02720 PF00829 Ribosomal prokaryotic L21 protein AVL56_02725 PF01016 Ribosomal L27 protein AVL56_02730 PF01018 GTP1/OBG AVL56_02730 PF01926 50S ribosome-binding GTPase AVL56_02740 PF09055 Nickel-containing superoxide dismutase AVL56_02760 PF00186 Dihydrofolate reductase AVL56_02765 PF00140 Sigma-70 factor, region 1.2 AVL56_02765 PF04542 Sigma-70 region 2 AVL56_02765 PF04539 Sigma-70 region 3 AVL56_02765 PF04545 Sigma-70, region 4 AVL56_02770 PF01476 LysM domain AVL56_02770 PF01551 Peptidase family M23 AVL56_02775 PF09335 SNARE associated Golgi protein AVL56_02785 PF01975 Survival protein SurE AVL56_02790 PF01142 tRNA pseudouridine synthase D (TruD) AVL56_02795 PF02542 YgbB family AVL56_02800 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AVL56_02805 PF04977 Septum formation initiator AVL56_02815 PF00672 HAMP domain AVL56_02815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_02815 PF17200 Single Cache domain 2 AVL56_02820 PF00171 Aldehyde dehydrogenase family AVL56_02820 PF01619 Proline dehydrogenase AVL56_02820 PF14850 DNA-binding domain of Proline dehydrogenase AVL56_02820 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AVL56_02825 PF02321 Outer membrane efflux protein AVL56_02830 PF13533 Biotin-lipoyl like AVL56_02835 PF00873 AcrB/AcrD/AcrF family AVL56_02840 PF00072 Response regulator receiver domain AVL56_02840 PF00486 Transcriptional regulatory protein, C terminal AVL56_02845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_02845 PF00512 His Kinase A (phospho-acceptor) domain AVL56_02850 PF08239 Bacterial SH3 domain AVL56_02855 PF01928 CYTH domain AVL56_02865 PF02976 DNA mismatch repair enzyme MutH AVL56_02870 PF00293 NUDIX domain AVL56_02875 PF00391 PEP-utilising enzyme, mobile domain AVL56_02875 PF02896 PEP-utilising enzyme, TIM barrel domain AVL56_02875 PF01590 GAF domain AVL56_02875 PF05524 PEP-utilising enzyme, N-terminal AVL56_02880 PF01925 Sulfite exporter TauE/SafE AVL56_02885 PF01790 Prolipoprotein diacylglyceryl transferase AVL56_02890 PF00303 Thymidylate synthase AVL56_02895 PF01339 CheB methylesterase AVL56_02895 PF00072 Response regulator receiver domain AVL56_02900 PF05230 MASE2 domain AVL56_02900 PF00990 Diguanylate cyclase, GGDEF domain AVL56_02905 PF00512 His Kinase A (phospho-acceptor) domain AVL56_02905 PF09308 LuxQ, periplasmic AVL56_02905 PF00072 Response regulator receiver domain AVL56_02905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_02910 PF07690 Major Facilitator Superfamily AVL56_02925 PF00849 RNA pseudouridylate synthase AVL56_02930 PF18339 RapA N-terminal Tudor like domain 1 AVL56_02930 PF18337 RapA N-terminal Tudor like domain AVL56_02930 PF12137 RNA polymerase recycling family C-terminal AVL56_02930 PF00271 Helicase conserved C-terminal domain AVL56_02930 PF00176 SNF2 family N-terminal domain AVL56_02935 PF02562 PhoH-like protein AVL56_02935 PF13638 PIN domain AVL56_02950 PF07729 FCD domain AVL56_02950 PF00392 Bacterial regulatory proteins, gntR family AVL56_02955 PF16347 Domain of unknown function (DUF4976) AVL56_02955 PF00884 Sulfatase AVL56_02960 PF00171 Aldehyde dehydrogenase family AVL56_02970 PF08240 Alcohol dehydrogenase GroES-like domain AVL56_02970 PF00107 Zinc-binding dehydrogenase AVL56_02975 PF13378 Enolase C-terminal domain-like AVL56_02975 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AVL56_02980 PF00083 Sugar (and other) transporter AVL56_03000 PF00067 Cytochrome P450 AVL56_03005 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL56_03010 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_03010 PF14759 Reductase C-terminal AVL56_03045 PF02449 Beta-galactosidase AVL56_03045 PF17992 Agarase CBM like domain AVL56_03055 PF00722 Glycosyl hydrolases family 16 AVL56_03065 PF17992 Agarase CBM like domain AVL56_03065 PF02449 Beta-galactosidase AVL56_03070 PF00884 Sulfatase AVL56_03080 PF04820 Tryptophan halogenase AVL56_03100 PF16385 Domain of unknown function AVL56_03100 PF00884 Sulfatase AVL56_03105 PF00593 TonB dependent receptor AVL56_03105 PF07715 TonB-dependent Receptor Plug Domain AVL56_03130 PF18206 Porphyranase catalytic subdomain 1 AVL56_03135 PF16347 Domain of unknown function (DUF4976) AVL56_03135 PF00884 Sulfatase AVL56_03140 PF00884 Sulfatase AVL56_03150 PF10414 Sirohaem synthase dimerisation region AVL56_03150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVL56_03155 PF03880 DbpA RNA binding domain AVL56_03155 PF00270 DEAD/DEAH box helicase AVL56_03155 PF12343 Cold shock protein DEAD box A AVL56_03155 PF00271 Helicase conserved C-terminal domain AVL56_03170 PF02321 Outer membrane efflux protein AVL56_03175 PF00293 NUDIX domain AVL56_03190 PF05728 Uncharacterised protein family (UPF0227) AVL56_03195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_03195 PF01751 Toprim domain AVL56_03195 PF00986 DNA gyrase B subunit, carboxyl terminus AVL56_03195 PF00204 DNA gyrase B AVL56_03200 PF00563 EAL domain AVL56_03200 PF00990 Diguanylate cyclase, GGDEF domain AVL56_03200 PF03707 Bacterial signalling protein N terminal repeat AVL56_03205 PF08446 PAS fold AVL56_03205 PF00360 Phytochrome region AVL56_03205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_03205 PF00512 His Kinase A (phospho-acceptor) domain AVL56_03205 PF01590 GAF domain AVL56_03210 PF13419 Haloacid dehalogenase-like hydrolase AVL56_03230 PF04055 Radical SAM superfamily AVL56_03235 PF08207 Elongation factor P (EF-P) KOW-like domain AVL56_03235 PF01132 Elongation factor P (EF-P) OB domain AVL56_03235 PF09285 Elongation factor P, C-terminal AVL56_03240 PF00152 tRNA synthetases class II (D, K and N) AVL56_03245 PF07715 TonB-dependent Receptor Plug Domain AVL56_03245 PF00593 TonB dependent receptor AVL56_03260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AVL56_03265 PF05175 Methyltransferase small domain AVL56_03275 PF01722 BolA-like protein AVL56_03280 PF01569 PAP2 superfamily AVL56_03290 PF08376 Nitrate and nitrite sensing AVL56_03290 PF03861 ANTAR domain AVL56_03300 PF01740 STAS domain AVL56_03300 PF00916 Sulfate permease family AVL56_03305 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AVL56_03305 PF04324 BFD-like [2Fe-2S] binding domain AVL56_03305 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AVL56_03305 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_03305 PF18267 Rubredoxin NAD+ reductase C-terminal domain AVL56_03310 PF13806 Rieske-like [2Fe-2S] domain AVL56_03315 PF01568 Molydopterin dinucleotide binding domain AVL56_03315 PF00384 Molybdopterin oxidoreductase AVL56_03315 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AVL56_03315 PF04324 BFD-like [2Fe-2S] binding domain AVL56_03320 PF14824 Sirohaem biosynthesis protein central AVL56_03320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVL56_03320 PF10414 Sirohaem synthase dimerisation region AVL56_03325 PF02885 Glycosyl transferase family, helical bundle domain AVL56_03325 PF00591 Glycosyl transferase family, a/b domain AVL56_03330 PF13426 PAS domain AVL56_03330 PF08447 PAS fold AVL56_03330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_03335 PF00005 ABC transporter AVL56_03340 PF00528 Binding-protein-dependent transport system inner membrane component AVL56_03345 PF00005 ABC transporter AVL56_03360 PF01323 DSBA-like thioredoxin domain AVL56_03365 PF07715 TonB-dependent Receptor Plug Domain AVL56_03365 PF00593 TonB dependent receptor AVL56_03370 PF01636 Phosphotransferase enzyme family AVL56_03375 PF12801 4Fe-4S binding domain AVL56_03375 PF13746 4Fe-4S dicluster domain AVL56_03375 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AVL56_03390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL56_03390 PF02770 Acyl-CoA dehydrogenase, middle domain AVL56_03390 PF12806 Acetyl-CoA dehydrogenase C-terminal like AVL56_03390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL56_03415 PF13378 Enolase C-terminal domain-like AVL56_03415 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AVL56_03420 PF00596 Class II Aldolase and Adducin N-terminal domain AVL56_03425 PF00293 NUDIX domain AVL56_03435 PF00873 AcrB/AcrD/AcrF family AVL56_03450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_03450 PF00672 HAMP domain AVL56_03450 PF02743 Cache domain AVL56_03455 PF04546 Sigma-70, non-essential region AVL56_03455 PF03979 Sigma-70 factor, region 1.1 AVL56_03455 PF00140 Sigma-70 factor, region 1.2 AVL56_03455 PF04542 Sigma-70 region 2 AVL56_03455 PF04539 Sigma-70 region 3 AVL56_03455 PF04545 Sigma-70, region 4 AVL56_03460 PF01807 CHC2 zinc finger AVL56_03460 PF08278 DNA primase DnaG DnaB-binding AVL56_03460 PF08275 DNA primase catalytic core, N-terminal domain AVL56_03460 PF10410 DnaB-helicase binding domain of primase AVL56_03465 PF09424 Yqey-like protein AVL56_03470 PF01165 Ribosomal protein S21 AVL56_03475 PF00814 Glycoprotease family AVL56_03485 PF02660 Glycerol-3-phosphate acyltransferase AVL56_03490 PF02152 Dihydroneopterin aldolase AVL56_03500 PF02673 Bacitracin resistance protein BacA AVL56_03505 PF01230 HIT domain AVL56_03520 PF03594 Benzoate membrane transport protein AVL56_03525 PF07883 Cupin domain AVL56_03525 PF01381 Helix-turn-helix AVL56_03530 PF04381 Putative exonuclease, RdgC AVL56_03535 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL56_03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_03535 PF00512 His Kinase A (phospho-acceptor) domain AVL56_03540 PF00072 Response regulator receiver domain AVL56_03540 PF00486 Transcriptional regulatory protein, C terminal AVL56_03545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_03545 PF00512 His Kinase A (phospho-acceptor) domain AVL56_03545 PF00989 PAS fold AVL56_03545 PF11808 Phosphate regulon sensor protein PhoR AVL56_03550 PF12849 PBP superfamily domain AVL56_03575 PF01618 MotA/TolQ/ExbB proton channel family AVL56_03580 PF01618 MotA/TolQ/ExbB proton channel family AVL56_03585 PF02472 Biopolymer transport protein ExbD/TolR AVL56_03590 PF03544 Gram-negative bacterial TonB protein C-terminal AVL56_03600 PF09411 Lipid A 3-O-deacylase (PagL) AVL56_03605 PF00072 Response regulator receiver domain AVL56_03610 PF00672 HAMP domain AVL56_03610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_03610 PF00512 His Kinase A (phospho-acceptor) domain AVL56_03610 PF01627 Hpt domain AVL56_03610 PF00072 Response regulator receiver domain AVL56_03610 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVL56_03615 PF13193 AMP-binding enzyme C-terminal domain AVL56_03615 PF00501 AMP-binding enzyme AVL56_03625 PF07995 Glucose / Sorbosone dehydrogenase AVL56_03630 PF11791 Aconitate B N-terminal domain AVL56_03630 PF00330 Aconitase family (aconitate hydratase) AVL56_03630 PF06434 Aconitate hydratase 2 N-terminus AVL56_03640 PF06434 Aconitate hydratase 2 N-terminus AVL56_03640 PF00330 Aconitase family (aconitate hydratase) AVL56_03640 PF11791 Aconitate B N-terminal domain AVL56_03650 PF00696 Amino acid kinase family AVL56_03650 PF01842 ACT domain AVL56_03655 PF00672 HAMP domain AVL56_03655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_03660 PF00149 Calcineurin-like phosphoesterase AVL56_03665 PF04379 ApaG domain AVL56_03670 PF00398 Ribosomal RNA adenine dimethylase AVL56_03675 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AVL56_03680 PF00639 PPIC-type PPIASE domain AVL56_03680 PF09312 SurA N-terminal domain AVL56_03685 PF03968 OstA-like protein AVL56_03685 PF04453 LPS transport system D AVL56_03690 PF00226 DnaJ domain AVL56_03690 PF05099 Tellurite resistance protein TerB AVL56_03695 PF02899 Phage integrase, N-terminal SAM-like domain AVL56_03695 PF00589 Phage integrase family AVL56_03700 PF13098 Thioredoxin-like domain AVL56_03700 PF10411 Disulfide bond isomerase protein N-terminus AVL56_03705 PF17768 RecJ OB domain AVL56_03705 PF01368 DHH family AVL56_03705 PF02272 DHHA1 domain AVL56_03715 PF02565 Recombination protein O C terminal AVL56_03715 PF11967 Recombination protein O N terminal AVL56_03720 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AVL56_03725 PF01648 4'-phosphopantetheinyl transferase superfamily AVL56_03730 PF05958 tRNA (Uracil-5-)-methyltransferase AVL56_03735 PF04607 Region found in RelA / SpoT proteins AVL56_03735 PF02824 TGS domain AVL56_03735 PF13291 ACT domain AVL56_03740 PF03819 MazG nucleotide pyrophosphohydrolase domain AVL56_03755 PF00572 Ribosomal protein L13 AVL56_03760 PF00380 Ribosomal protein S9/S16 AVL56_03765 PF04542 Sigma-70 region 2 AVL56_03765 PF08281 Sigma-70, region 4 AVL56_03775 PF07715 TonB-dependent Receptor Plug Domain AVL56_03775 PF00593 TonB dependent receptor AVL56_03785 PF01546 Peptidase family M20/M25/M40 AVL56_03790 PF00355 Rieske [2Fe-2S] domain AVL56_03790 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AVL56_03795 PF00032 Cytochrome b(C-terminal)/b6/petD AVL56_03795 PF00033 Cytochrome b/b6/petB AVL56_03800 PF02167 Cytochrome C1 family AVL56_03805 PF00043 Glutathione S-transferase, C-terminal domain AVL56_03805 PF02798 Glutathione S-transferase, N-terminal domain AVL56_03810 PF04386 Stringent starvation protein B AVL56_03815 PF09334 tRNA synthetases class I (M) AVL56_03815 PF01588 Putative tRNA binding domain AVL56_03815 PF08264 Anticodon-binding domain of tRNA AVL56_03820 PF12833 Helix-turn-helix domain AVL56_03830 PF00571 CBS domain AVL56_03830 PF03448 MgtE intracellular N domain AVL56_03830 PF01769 Divalent cation transporter AVL56_03835 PF00381 PTS HPr component phosphorylation site AVL56_03840 PF03668 P-loop ATPase protein family AVL56_03845 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AVL56_03850 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AVL56_03855 PF00309 Sigma-54 factor, Activator interacting domain (AID) AVL56_03855 PF04552 Sigma-54, DNA binding domain AVL56_03855 PF04963 Sigma-54 factor, core binding domain AVL56_03860 PF00005 ABC transporter AVL56_03860 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVL56_03880 PF00571 CBS domain AVL56_03880 PF01380 SIS domain AVL56_03885 PF01699 Sodium/calcium exchanger protein AVL56_03890 PF00005 ABC transporter AVL56_03895 PF02405 Permease MlaE AVL56_03900 PF02470 MlaD protein AVL56_03905 PF05494 MlaC protein AVL56_03915 PF01722 BolA-like protein AVL56_03920 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AVL56_03925 PF13180 PDZ domain AVL56_03930 PF13180 PDZ domain AVL56_03930 PF00595 PDZ domain AVL56_03940 PF03969 AFG1-like ATPase AVL56_03945 PF01709 Transcriptional regulator AVL56_03955 PF12833 Helix-turn-helix domain AVL56_03970 PF02355 Protein export membrane protein AVL56_03970 PF07549 SecD/SecF GG Motif AVL56_03975 PF00999 Sodium/hydrogen exchanger family AVL56_03975 PF03471 Transporter associated domain AVL56_03975 PF02080 TrkA-C domain AVL56_03985 PF13188 PAS domain AVL56_03985 PF00563 EAL domain AVL56_03985 PF00990 Diguanylate cyclase, GGDEF domain AVL56_03985 PF03707 Bacterial signalling protein N terminal repeat AVL56_03990 PF00512 His Kinase A (phospho-acceptor) domain AVL56_03990 PF00072 Response regulator receiver domain AVL56_03990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_03990 PF09308 LuxQ, periplasmic AVL56_04000 PF06719 AraC-type transcriptional regulator N-terminus AVL56_04000 PF12833 Helix-turn-helix domain AVL56_04005 PF00465 Iron-containing alcohol dehydrogenase AVL56_04025 PF02773 S-adenosylmethionine synthetase, C-terminal domain AVL56_04025 PF00438 S-adenosylmethionine synthetase, N-terminal domain AVL56_04025 PF02772 S-adenosylmethionine synthetase, central domain AVL56_04030 PF02779 Transketolase, pyrimidine binding domain AVL56_04030 PF00456 Transketolase, thiamine diphosphate binding domain AVL56_04030 PF02780 Transketolase, C-terminal domain AVL56_04035 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AVL56_04035 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL56_04040 PF00162 Phosphoglycerate kinase AVL56_04045 PF00274 Fructose-bisphosphate aldolase class-I AVL56_04050 PF00326 Prolyl oligopeptidase family AVL56_04050 PF07676 WD40-like Beta Propeller Repeat AVL56_04055 PF02541 Ppx/GppA phosphatase family AVL56_04060 PF13089 Polyphosphate kinase N-terminal domain AVL56_04060 PF17941 Polyphosphate kinase C-terminal domain 1 AVL56_04060 PF13090 Polyphosphate kinase C-terminal domain 2 AVL56_04060 PF02503 Polyphosphate kinase middle domain AVL56_04070 PF00528 Binding-protein-dependent transport system inner membrane component AVL56_04075 PF00528 Binding-protein-dependent transport system inner membrane component AVL56_04080 PF00005 ABC transporter AVL56_04085 PF01895 PhoU domain AVL56_04090 PF01384 Phosphate transporter family AVL56_04100 PF03466 LysR substrate binding domain AVL56_04100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_04105 PF04542 Sigma-70 region 2 AVL56_04105 PF12680 SnoaL-like domain AVL56_04105 PF08281 Sigma-70, region 4 AVL56_04125 PF03006 Haemolysin-III related AVL56_04130 PF00563 EAL domain AVL56_04130 PF00990 Diguanylate cyclase, GGDEF domain AVL56_04130 PF03707 Bacterial signalling protein N terminal repeat AVL56_04145 PF00083 Sugar (and other) transporter AVL56_04150 PF12833 Helix-turn-helix domain AVL56_04155 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AVL56_04155 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AVL56_04165 PF00553 Cellulose binding domain AVL56_04165 PF02927 Cellulase N-terminal ig-like domain AVL56_04165 PF00759 Glycosyl hydrolase family 9 AVL56_04165 PF00801 PKD domain AVL56_04165 PF02013 Cellulose or protein binding domain AVL56_04170 PF12833 Helix-turn-helix domain AVL56_04175 PF04820 Tryptophan halogenase AVL56_04185 PF01915 Glycosyl hydrolase family 3 C-terminal domain AVL56_04185 PF14310 Fibronectin type III-like domain AVL56_04185 PF00933 Glycosyl hydrolase family 3 N terminal domain AVL56_04185 PF07691 PA14 domain AVL56_04190 PF01047 MarR family AVL56_04195 PF02566 OsmC-like protein AVL56_04200 PF01433 Peptidase family M1 domain AVL56_04210 PF09186 Domain of unknown function (DUF1949) AVL56_04210 PF01205 Uncharacterized protein family UPF0029 AVL56_04215 PF13426 PAS domain AVL56_04215 PF08447 PAS fold AVL56_04215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_04220 PF12320 Type 5 capsule protein repressor C-terminal domain AVL56_04220 PF00149 Calcineurin-like phosphoesterase AVL56_04225 PF13476 AAA domain AVL56_04230 PF05230 MASE2 domain AVL56_04230 PF00990 Diguanylate cyclase, GGDEF domain AVL56_04240 PF01869 BadF/BadG/BcrA/BcrD ATPase family AVL56_04245 PF01979 Amidohydrolase family AVL56_04255 PF00005 ABC transporter AVL56_04255 PF12848 ABC transporter AVL56_04275 PF07715 TonB-dependent Receptor Plug Domain AVL56_04275 PF00593 TonB dependent receptor AVL56_04290 PF01734 Patatin-like phospholipase AVL56_04315 PF00593 TonB dependent receptor AVL56_04320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_04320 PF03466 LysR substrate binding domain AVL56_04345 PF00145 C-5 cytosine-specific DNA methylase AVL56_04355 PF02899 Phage integrase, N-terminal SAM-like domain AVL56_04355 PF00589 Phage integrase family AVL56_04360 PF00589 Phage integrase family AVL56_04405 PF00476 DNA polymerase family A AVL56_04405 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AVL56_04405 PF01367 5'-3' exonuclease, C-terminal SAM fold AVL56_04420 PF04002 RadC-like JAB domain AVL56_04455 PF04172 LrgB-like family AVL56_04460 PF00072 Response regulator receiver domain AVL56_04485 PF04055 Radical SAM superfamily AVL56_04485 PF06969 HemN C-terminal domain AVL56_04490 PF01725 Ham1 family AVL56_04495 PF00271 Helicase conserved C-terminal domain AVL56_04495 PF00270 DEAD/DEAH box helicase AVL56_04500 PF12627 Probable RNA and SrmB- binding site of polymerase A AVL56_04500 PF01743 Poly A polymerase head domain AVL56_04505 PF13401 AAA domain AVL56_04505 PF01471 Putative peptidoglycan binding domain AVL56_04515 PF11849 Domain of unknown function (DUF3369) AVL56_04520 PF00694 Aconitase C-terminal domain AVL56_04525 PF00330 Aconitase family (aconitate hydratase) AVL56_04530 PF00180 Isocitrate/isopropylmalate dehydrogenase AVL56_04535 PF08502 LeuA allosteric (dimerisation) domain AVL56_04535 PF00682 HMGL-like AVL56_04540 PF00561 alpha/beta hydrolase fold AVL56_04555 PF00113 Enolase, C-terminal TIM barrel domain AVL56_04555 PF03952 Enolase, N-terminal domain AVL56_04560 PF00117 Glutamine amidotransferase class-I AVL56_04560 PF06418 CTP synthase N-terminus AVL56_04565 PF05190 MutS family domain IV AVL56_04565 PF00488 MutS domain V AVL56_04565 PF01624 MutS domain I AVL56_04565 PF05188 MutS domain II AVL56_04565 PF05192 MutS domain III AVL56_04570 PF02464 Competence-damaged protein AVL56_04575 PF00154 recA bacterial DNA recombination protein AVL56_04580 PF00005 ABC transporter AVL56_04585 PF12679 ABC-2 family transporter protein AVL56_04605 PF00005 ABC transporter AVL56_04610 PF03379 CcmB protein AVL56_04615 PF01578 Cytochrome C assembly protein AVL56_04620 PF04995 Heme exporter protein D (CcmD) AVL56_04625 PF03100 CcmE AVL56_04630 PF01578 Cytochrome C assembly protein AVL56_04630 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AVL56_04635 PF08534 Redoxin AVL56_04640 PF03918 Cytochrome C biogenesis protein AVL56_04650 PF04333 MlaA lipoprotein AVL56_04655 PF16363 GDP-mannose 4,6 dehydratase AVL56_04665 PF00854 POT family AVL56_04675 PF00005 ABC transporter AVL56_04680 PF01061 ABC-2 type transporter AVL56_04685 PF02563 Polysaccharide biosynthesis/export protein AVL56_04685 PF10531 SLBB domain AVL56_04695 PF00953 Glycosyl transferase family 4 AVL56_04700 PF00535 Glycosyl transferase family 2 AVL56_04710 PF00483 Nucleotidyl transferase AVL56_04715 PF10531 SLBB domain AVL56_04720 PF18324 Hypothetical protein TT1725 AVL56_04720 PF00180 Isocitrate/isopropylmalate dehydrogenase AVL56_04735 PF11892 Domain of unknown function (DUF3412) AVL56_04735 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AVL56_04735 PF03641 Possible lysine decarboxylase AVL56_04740 PF00990 Diguanylate cyclase, GGDEF domain AVL56_04745 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AVL56_04745 PF14489 QueF-like protein AVL56_04750 PF07348 Syd protein (SUKH-2) AVL56_04775 PF13438 Domain of unknown function (DUF4113) AVL56_04775 PF00817 impB/mucB/samB family AVL56_04775 PF11799 impB/mucB/samB family C-terminal domain AVL56_04780 PF00717 Peptidase S24-like AVL56_04785 PF00326 Prolyl oligopeptidase family AVL56_04815 PF00849 RNA pseudouridylate synthase AVL56_04820 PF00258 Flavodoxin AVL56_04825 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AVL56_04825 PF14602 Hexapeptide repeat of succinyl-transferase AVL56_04825 PF00132 Bacterial transferase hexapeptide (six repeats) AVL56_04830 PF01909 Nucleotidyltransferase domain AVL56_04830 PF01966 HD domain AVL56_04830 PF01842 ACT domain AVL56_04830 PF08335 GlnD PII-uridylyltransferase AVL56_04835 PF00557 Metallopeptidase family M24 AVL56_04840 PF00318 Ribosomal protein S2 AVL56_04845 PF00889 Elongation factor TS AVL56_04850 PF00696 Amino acid kinase family AVL56_04855 PF01765 Ribosome recycling factor AVL56_04860 PF01255 Putative undecaprenyl diphosphate synthase AVL56_04870 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AVL56_04870 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AVL56_04870 PF13288 DXP reductoisomerase C-terminal domain AVL56_04875 PF17820 PDZ domain AVL56_04875 PF02163 Peptidase family M50 AVL56_04880 PF07244 Surface antigen variable number repeat AVL56_04880 PF01103 Surface antigen AVL56_04890 PF07977 FabA-like domain AVL56_04895 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AVL56_04895 PF00132 Bacterial transferase hexapeptide (six repeats) AVL56_04900 PF02684 Lipid-A-disaccharide synthetase AVL56_04905 PF01351 Ribonuclease HII AVL56_04910 PF01336 OB-fold nucleic acid binding domain AVL56_04910 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AVL56_04910 PF07733 Bacterial DNA polymerase III alpha NTPase domain AVL56_04910 PF02811 PHP domain AVL56_04910 PF14579 Helix-hairpin-helix motif AVL56_04915 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AVL56_04920 PF09179 TilS substrate binding domain AVL56_04920 PF01171 PP-loop family AVL56_04920 PF11734 TilS substrate C-terminal domain AVL56_04925 PF00563 EAL domain AVL56_04925 PF00990 Diguanylate cyclase, GGDEF domain AVL56_04925 PF03707 Bacterial signalling protein N terminal repeat AVL56_04930 PF00999 Sodium/hydrogen exchanger family AVL56_04930 PF02080 TrkA-C domain AVL56_04930 PF02254 TrkA-N domain AVL56_04940 PF14437 MafB19-like deaminase AVL56_04945 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL56_04945 PF01464 Transglycosylase SLT domain AVL56_04950 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AVL56_04950 PF02769 AIR synthase related protein, C-terminal domain AVL56_04950 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AVL56_04955 PF01713 Smr domain AVL56_04985 PF00271 Helicase conserved C-terminal domain AVL56_04985 PF00270 DEAD/DEAH box helicase AVL56_04990 PF01144 Coenzyme A transferase AVL56_04995 PF01144 Coenzyme A transferase AVL56_05000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_05000 PF03466 LysR substrate binding domain AVL56_05015 PF03466 LysR substrate binding domain AVL56_05015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_05020 PF03313 Serine dehydratase alpha chain AVL56_05020 PF03315 Serine dehydratase beta chain AVL56_05025 PF00293 NUDIX domain AVL56_05030 PF04715 Anthranilate synthase component I, N terminal region AVL56_05030 PF00425 chorismate binding enzyme AVL56_05040 PF02646 RmuC family AVL56_05045 PF02225 PA domain AVL56_05045 PF13860 FlgD Ig-like domain AVL56_05045 PF05922 Peptidase inhibitor I9 AVL56_05045 PF00082 Subtilase family AVL56_05050 PF00676 Dehydrogenase E1 component AVL56_05055 PF02779 Transketolase, pyrimidine binding domain AVL56_05055 PF02780 Transketolase, C-terminal domain AVL56_05060 PF02817 e3 binding domain AVL56_05060 PF00364 Biotin-requiring enzyme AVL56_05060 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AVL56_05065 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AVL56_05070 PF00069 Protein kinase domain AVL56_05080 PF00132 Bacterial transferase hexapeptide (six repeats) AVL56_05085 PF00266 Aminotransferase class-V AVL56_05095 PF13185 GAF domain AVL56_05105 PF17516 ProQ C-terminal domain AVL56_05105 PF04352 ProQ/FINO family AVL56_05110 PF11818 C-terminal domain of tail specific protease (DUF3340) AVL56_05110 PF00595 PDZ domain AVL56_05110 PF03572 Peptidase family S41 AVL56_05110 PF17804 Tail specific protease N-terminal domain AVL56_05115 PF00209 Sodium:neurotransmitter symporter family AVL56_05120 PF03553 Na+/H+ antiporter family AVL56_05125 PF11940 Domain of unknown function (DUF3458) Ig-like fold AVL56_05125 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AVL56_05125 PF01433 Peptidase family M1 domain AVL56_05140 PF07044 Protein of unknown function (DUF1329) AVL56_05155 PF05088 Bacterial NAD-glutamate dehydrogenase AVL56_05160 PF01180 Dihydroorotate dehydrogenase AVL56_05165 PF02926 THUMP domain AVL56_05165 PF01170 Putative RNA methylase family UPF0020 AVL56_05165 PF10672 S-adenosylmethionine-dependent methyltransferase AVL56_05175 PF00005 ABC transporter AVL56_05175 PF12848 ABC transporter AVL56_05175 PF16326 ABC transporter C-terminal domain AVL56_05185 PF04957 Ribosome modulation factor AVL56_05190 PF07977 FabA-like domain AVL56_05200 PF00875 DNA photolyase AVL56_05200 PF03441 FAD binding domain of DNA photolyase AVL56_05205 PF00875 DNA photolyase AVL56_05205 PF03441 FAD binding domain of DNA photolyase AVL56_05210 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AVL56_05235 PF01219 Prokaryotic diacylglycerol kinase AVL56_05240 PF00582 Universal stress protein family AVL56_05250 PF01645 Conserved region in glutamate synthase AVL56_05255 PF00999 Sodium/hydrogen exchanger family AVL56_05260 PF00210 Ferritin-like domain AVL56_05265 PF00210 Ferritin-like domain AVL56_05275 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVL56_05290 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AVL56_05290 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVL56_05300 PF00403 Heavy-metal-associated domain AVL56_05315 PF13545 Crp-like helix-turn-helix domain AVL56_05315 PF00027 Cyclic nucleotide-binding domain AVL56_05320 PF00582 Universal stress protein family AVL56_05325 PF01171 PP-loop family AVL56_05330 PF01734 Patatin-like phospholipase AVL56_05350 PF13193 AMP-binding enzyme C-terminal domain AVL56_05350 PF00668 Condensation domain AVL56_05350 PF00550 Phosphopantetheine attachment site AVL56_05350 PF00975 Thioesterase domain AVL56_05350 PF00501 AMP-binding enzyme AVL56_05355 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AVL56_05360 PF00975 Thioesterase domain AVL56_05380 PF00501 AMP-binding enzyme AVL56_05380 PF13193 AMP-binding enzyme C-terminal domain AVL56_05380 PF00668 Condensation domain AVL56_05380 PF00550 Phosphopantetheine attachment site AVL56_05385 PF00550 Phosphopantetheine attachment site AVL56_05385 PF00501 AMP-binding enzyme AVL56_05385 PF13193 AMP-binding enzyme C-terminal domain AVL56_05385 PF00668 Condensation domain AVL56_05395 PF01810 LysE type translocator AVL56_05400 PF02146 Sir2 family AVL56_05405 PF00581 Rhodanese-like domain AVL56_05410 PF08534 Redoxin AVL56_05415 PF03942 DTW domain AVL56_05455 PF01066 CDP-alcohol phosphatidyltransferase AVL56_05460 PF01541 GIY-YIG catalytic domain AVL56_05460 PF02151 UvrB/uvrC motif AVL56_05460 PF08459 UvrC Helix-hairpin-helix N-terminal AVL56_05465 PF00196 Bacterial regulatory proteins, luxR family AVL56_05465 PF00072 Response regulator receiver domain AVL56_05470 PF17954 Quercetinase C-terminal cupin domain AVL56_05470 PF02678 Pirin AVL56_05480 PF12867 DinB superfamily AVL56_05480 PF03781 Sulfatase-modifying factor enzyme 1 AVL56_05510 PF00512 His Kinase A (phospho-acceptor) domain AVL56_05510 PF08521 Two-component sensor kinase N-terminal AVL56_05510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_05515 PF00486 Transcriptional regulatory protein, C terminal AVL56_05515 PF00072 Response regulator receiver domain AVL56_05530 PF00144 Beta-lactamase AVL56_05540 PF01027 Inhibitor of apoptosis-promoting Bax1 AVL56_05545 PF02635 DsrE/DsrF-like family AVL56_05550 PF02635 DsrE/DsrF-like family AVL56_05560 PF04358 DsrC like protein AVL56_05570 PF02403 Seryl-tRNA synthetase N-terminal domain AVL56_05570 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVL56_05575 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AVL56_05580 PF00004 ATPase family associated with various cellular activities (AAA) AVL56_05580 PF16193 AAA C-terminal domain AVL56_05580 PF12002 MgsA AAA+ ATPase C terminal AVL56_05585 PF03548 Outer membrane lipoprotein carrier protein LolA AVL56_05590 PF01580 FtsK/SpoIIIE family AVL56_05590 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AVL56_05590 PF17854 FtsK alpha domain AVL56_05590 PF09397 Ftsk gamma domain AVL56_05595 PF01037 Lrp/AsnC ligand binding domain AVL56_05600 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AVL56_05600 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AVL56_05605 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AVL56_05610 PF18073 Rubredoxin metal binding domain AVL56_05615 PF06305 Lipopolysaccharide assembly protein A domain AVL56_05625 PF00216 Bacterial DNA-binding protein AVL56_05630 PF00575 S1 RNA binding domain AVL56_05635 PF02224 Cytidylate kinase AVL56_05640 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AVL56_05645 PF00266 Aminotransferase class-V AVL56_05650 PF03989 DNA gyrase C-terminal domain, beta-propeller AVL56_05650 PF00521 DNA gyrase/topoisomerase IV, subunit A AVL56_05660 PF00317 Ribonucleotide reductase, all-alpha domain AVL56_05660 PF03477 ATP cone domain AVL56_05660 PF02867 Ribonucleotide reductase, barrel domain AVL56_05665 PF00268 Ribonucleotide reductase, small chain AVL56_05670 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL56_05675 PF00672 HAMP domain AVL56_05675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_05675 PF00512 His Kinase A (phospho-acceptor) domain AVL56_05675 PF00989 PAS fold AVL56_05675 PF18698 Histidine kinase sensor domain AVL56_05680 PF00072 Response regulator receiver domain AVL56_05680 PF00486 Transcriptional regulatory protein, C terminal AVL56_05705 PF13411 MerR HTH family regulatory protein AVL56_05705 PF07739 TipAS antibiotic-recognition domain AVL56_05815 PF00005 ABC transporter AVL56_05830 PF07715 TonB-dependent Receptor Plug Domain AVL56_05830 PF00593 TonB dependent receptor AVL56_05840 PF00892 EamA-like transporter family AVL56_05845 PF01259 SAICAR synthetase AVL56_05850 PF06804 NlpB/DapX lipoprotein AVL56_05855 PF00701 Dihydrodipicolinate synthetase family AVL56_05865 PF00578 AhpC/TSA family AVL56_05870 PF01594 AI-2E family transporter AVL56_05875 PF01435 Peptidase family M48 AVL56_05885 PF03960 ArsC family AVL56_05890 PF03358 NADPH-dependent FMN reductase AVL56_05905 PF00308 Bacterial dnaA protein AVL56_05915 PF00586 AIR synthase related protein, N-terminal domain AVL56_05915 PF02769 AIR synthase related protein, C-terminal domain AVL56_05920 PF00551 Formyl transferase AVL56_05930 PF09317 Domain of unknown function (DUF1974) AVL56_05930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL56_05930 PF02770 Acyl-CoA dehydrogenase, middle domain AVL56_05930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL56_05940 PF00072 Response regulator receiver domain AVL56_05940 PF00196 Bacterial regulatory proteins, luxR family AVL56_05945 PF13649 Methyltransferase domain AVL56_05950 PF08003 Protein of unknown function (DUF1698) AVL56_05955 PF00485 Phosphoribulokinase / Uridine kinase family AVL56_05970 PF00128 Alpha amylase, catalytic domain AVL56_05975 PF00994 Probable molybdopterin binding domain AVL56_05975 PF03454 MoeA C-terminal region (domain IV) AVL56_05975 PF03453 MoeA N-terminal region (domain I and II) AVL56_05980 PF01554 MatE AVL56_05995 PF17862 AAA+ lid domain AVL56_05995 PF01434 Peptidase family M41 AVL56_05995 PF00004 ATPase family associated with various cellular activities (AAA) AVL56_06000 PF00291 Pyridoxal-phosphate dependent enzyme AVL56_06015 PF00378 Enoyl-CoA hydratase/isomerase AVL56_06030 PF02525 Flavodoxin-like fold AVL56_06035 PF01053 Cys/Met metabolism PLP-dependent enzyme AVL56_06050 PF00155 Aminotransferase class I and II AVL56_06055 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AVL56_06070 PF12806 Acetyl-CoA dehydrogenase C-terminal like AVL56_06070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL56_06070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL56_06070 PF02770 Acyl-CoA dehydrogenase, middle domain AVL56_06075 PF02311 AraC-like ligand binding domain AVL56_06075 PF12833 Helix-turn-helix domain AVL56_06080 PF07715 TonB-dependent Receptor Plug Domain AVL56_06080 PF00593 TonB dependent receptor AVL56_06090 PF00873 AcrB/AcrD/AcrF family AVL56_06095 PF00529 HlyD membrane-fusion protein of T1SS AVL56_06095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL56_06105 PF01012 Electron transfer flavoprotein domain AVL56_06105 PF00766 Electron transfer flavoprotein FAD-binding domain AVL56_06110 PF01012 Electron transfer flavoprotein domain AVL56_06120 PF00816 H-NS histone family AVL56_06125 PF12697 Alpha/beta hydrolase family AVL56_06135 PF00258 Flavodoxin AVL56_06140 PF00672 HAMP domain AVL56_06140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_06145 PF01475 Ferric uptake regulator family AVL56_06150 PF02447 GntP family permease AVL56_06155 PF01202 Shikimate kinase AVL56_06160 PF00356 Bacterial regulatory proteins, lacI family AVL56_06165 PF01063 Amino-transferase class IV AVL56_06170 PF02626 Carboxyltransferase domain, subdomain A and B AVL56_06180 PF03746 LamB/YcsF family AVL56_06185 PF13509 S1 domain AVL56_06185 PF17783 CvfB-like winged helix domain AVL56_06190 PF02566 OsmC-like protein AVL56_06195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL56_06200 PF00873 AcrB/AcrD/AcrF family AVL56_06205 PF00873 AcrB/AcrD/AcrF family AVL56_06220 PF00155 Aminotransferase class I and II AVL56_06230 PF01966 HD domain AVL56_06230 PF13286 Phosphohydrolase-associated domain AVL56_06240 PF00174 Oxidoreductase molybdopterin binding domain AVL56_06245 PF01794 Ferric reductase like transmembrane component AVL56_06250 PF09335 SNARE associated Golgi protein AVL56_06260 PF02810 SEC-C motif AVL56_06270 PF08267 Cobalamin-independent synthase, N-terminal domain AVL56_06270 PF01717 Cobalamin-independent synthase, Catalytic domain AVL56_06295 PF09905 DNA-binding protein VF530 AVL56_06305 PF00583 Acetyltransferase (GNAT) family AVL56_06310 PF00005 ABC transporter AVL56_06320 PF00013 KH domain AVL56_06320 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AVL56_06320 PF00575 S1 RNA binding domain AVL56_06320 PF01138 3' exoribonuclease family, domain 1 AVL56_06320 PF03725 3' exoribonuclease family, domain 2 AVL56_06335 PF00171 Aldehyde dehydrogenase family AVL56_06340 PF00696 Amino acid kinase family AVL56_06345 PF00474 Sodium:solute symporter family AVL56_06365 PF00781 Diacylglycerol kinase catalytic domain AVL56_06375 PF00563 EAL domain AVL56_06375 PF00990 Diguanylate cyclase, GGDEF domain AVL56_06375 PF03707 Bacterial signalling protein N terminal repeat AVL56_06385 PF03840 Preprotein translocase SecG subunit AVL56_06390 PF00121 Triosephosphate isomerase AVL56_06395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVL56_06395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVL56_06395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVL56_06395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVL56_06400 PF00809 Pterin binding enzyme AVL56_06405 PF00004 ATPase family associated with various cellular activities (AAA) AVL56_06405 PF01434 Peptidase family M41 AVL56_06405 PF06480 FtsH Extracellular AVL56_06405 PF17862 AAA+ lid domain AVL56_06410 PF01728 FtsJ-like methyltransferase AVL56_06415 PF01985 CRS1 / YhbY (CRM) domain AVL56_06420 PF00106 short chain dehydrogenase AVL56_06425 PF13654 AAA domain AVL56_06425 PF05362 Lon protease (S16) C-terminal proteolytic domain AVL56_06430 PF00133 tRNA synthetases class I (I, L, M and V) AVL56_06430 PF08264 Anticodon-binding domain of tRNA AVL56_06430 PF13603 Leucyl-tRNA synthetase, Domain 2 AVL56_06440 PF06144 DNA polymerase III, delta subunit AVL56_06440 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AVL56_06445 PF01467 Cytidylyltransferase-like AVL56_06455 PF02590 Predicted SPOUT methyltransferase AVL56_06460 PF03717 Penicillin-binding Protein dimerisation domain AVL56_06460 PF00905 Penicillin binding protein transpeptidase domain AVL56_06465 PF01098 Cell cycle protein AVL56_06470 PF03330 Lytic transglycolase AVL56_06470 PF05036 Sporulation related domain AVL56_06475 PF00768 D-alanyl-D-alanine carboxypeptidase AVL56_06475 PF07943 Penicillin-binding protein 5, C-terminal domain AVL56_06480 PF04359 Protein of unknown function (DUF493) AVL56_06485 PF03099 Biotin/lipoate A/B protein ligase family AVL56_06490 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AVL56_06490 PF04055 Radical SAM superfamily AVL56_06500 PF00710 Asparaginase, N-terminal AVL56_06500 PF17763 Glutaminase/Asparaginase C-terminal domain AVL56_06510 PF00881 Nitroreductase family AVL56_06525 PF01343 Peptidase family S49 AVL56_06530 PF17283 SprT-like zinc ribbon domain AVL56_06530 PF10263 SprT-like family AVL56_06535 PF04217 Protein of unknown function, DUF412 AVL56_06545 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_06550 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AVL56_06555 PF04377 Arginine-tRNA-protein transferase, C terminus AVL56_06555 PF04376 Arginine-tRNA-protein transferase, N terminus AVL56_06560 PF01176 Translation initiation factor 1A / IF-1 AVL56_06565 PF17871 AAA lid domain AVL56_06565 PF02861 Clp amino terminal domain, pathogenicity island component AVL56_06565 PF10431 C-terminal, D2-small domain, of ClpB protein AVL56_06565 PF00004 ATPase family associated with various cellular activities (AAA) AVL56_06565 PF07724 AAA domain (Cdc48 subfamily) AVL56_06570 PF02617 ATP-dependent Clp protease adaptor protein ClpS AVL56_06575 PF00313 'Cold-shock' DNA-binding domain AVL56_06580 PF03971 Monomeric isocitrate dehydrogenase AVL56_06585 PF00849 RNA pseudouridylate synthase AVL56_06595 PF04356 Protein of unknown function (DUF489) AVL56_06600 PF08328 Adenylosuccinate lyase C-terminal AVL56_06600 PF00206 Lyase AVL56_06605 PF00211 Adenylate and Guanylate cyclase catalytic domain AVL56_06610 PF08007 Cupin superfamily protein AVL56_06625 PF02913 FAD linked oxidases, C-terminal domain AVL56_06625 PF01565 FAD binding domain AVL56_06625 PF13183 4Fe-4S dicluster domain AVL56_06630 PF06865 Pyrimidine/purine nucleoside phosphorylase AVL56_06635 PF00144 Beta-lactamase AVL56_06635 PF11954 Domain of unknown function (DUF3471) AVL56_06675 PF03551 Transcriptional regulator PadR-like family AVL56_06715 PF14592 Chondroitinase B AVL56_06720 PF01202 Shikimate kinase AVL56_06745 PF00356 Bacterial regulatory proteins, lacI family AVL56_06750 PF03547 Membrane transport protein AVL56_06760 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL56_06760 PF01799 [2Fe-2S] binding domain AVL56_06765 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVL56_06770 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AVL56_06770 PF02896 PEP-utilising enzyme, TIM barrel domain AVL56_06770 PF00391 PEP-utilising enzyme, mobile domain AVL56_06775 PF03618 Kinase/pyrophosphorylase AVL56_06790 PF14552 Tautomerase enzyme AVL56_06805 PF04191 Phospholipid methyltransferase AVL56_06810 PF06271 RDD family AVL56_06830 PF00072 Response regulator receiver domain AVL56_06830 PF00990 Diguanylate cyclase, GGDEF domain AVL56_06835 PF13460 NAD(P)H-binding AVL56_06845 PF01026 TatD related DNase AVL56_06850 PF09115 DNA polymerase III, delta subunit, C terminal AVL56_06855 PF02223 Thymidylate kinase AVL56_06860 PF02618 YceG-like family AVL56_06865 PF01063 Amino-transferase class IV AVL56_06870 PF00109 Beta-ketoacyl synthase, N-terminal domain AVL56_06870 PF02801 Beta-ketoacyl synthase, C-terminal domain AVL56_06875 PF00550 Phosphopantetheine attachment site AVL56_06885 PF00698 Acyl transferase domain AVL56_06890 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AVL56_06890 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AVL56_06895 PF02504 Fatty acid synthesis protein AVL56_06900 PF01783 Ribosomal L32p protein family AVL56_06905 PF02620 Large ribosomal RNA subunit accumulation protein YceD AVL56_06910 PF02545 Maf-like protein AVL56_06915 PF13419 Haloacid dehalogenase-like hydrolase AVL56_06920 PF00849 RNA pseudouridylate synthase AVL56_06920 PF01479 S4 domain AVL56_06925 PF10150 Ribonuclease E/G family AVL56_06925 PF00575 S1 RNA binding domain AVL56_06925 PF12111 Polyribonucleotide phosphorylase C terminal AVL56_06940 PF13419 Haloacid dehalogenase-like hydrolase AVL56_06945 PF13673 Acetyltransferase (GNAT) domain AVL56_06955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_06955 PF03466 LysR substrate binding domain AVL56_06965 PF02798 Glutathione S-transferase, N-terminal domain AVL56_06980 PF00962 Adenosine/AMP deaminase AVL56_06990 PF03466 LysR substrate binding domain AVL56_06990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_07000 PF01131 DNA topoisomerase AVL56_07000 PF01751 Toprim domain AVL56_07000 PF08272 Topoisomerase I zinc-ribbon-like AVL56_07000 PF01396 Topoisomerase DNA binding C4 zinc finger AVL56_07005 PF04996 Succinylarginine dihydrolase AVL56_07015 PF00375 Sodium:dicarboxylate symporter family AVL56_07020 PF02687 FtsX-like permease family AVL56_07020 PF12704 MacB-like periplasmic core domain AVL56_07025 PF00005 ABC transporter AVL56_07030 PF12792 CSS motif domain associated with EAL AVL56_07030 PF00563 EAL domain AVL56_07060 PF00929 Exonuclease AVL56_07065 PF00075 RNase H AVL56_07070 PF00698 Acyl transferase domain AVL56_07070 PF08240 Alcohol dehydrogenase GroES-like domain AVL56_07070 PF16197 Ketoacyl-synthetase C-terminal extension AVL56_07070 PF00109 Beta-ketoacyl synthase, N-terminal domain AVL56_07070 PF02801 Beta-ketoacyl synthase, C-terminal domain AVL56_07070 PF08659 KR domain AVL56_07070 PF00550 Phosphopantetheine attachment site AVL56_07070 PF14765 Polyketide synthase dehydratase AVL56_07075 PF10672 S-adenosylmethionine-dependent methyltransferase AVL56_07075 PF17785 PUA-like domain AVL56_07090 PF00270 DEAD/DEAH box helicase AVL56_07090 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AVL56_07090 PF00271 Helicase conserved C-terminal domain AVL56_07090 PF04408 Helicase associated domain (HA2) AVL56_07090 PF11898 Domain of unknown function (DUF3418) AVL56_07120 PF02333 Phytase AVL56_07130 PF00512 His Kinase A (phospho-acceptor) domain AVL56_07130 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVL56_07130 PF00672 HAMP domain AVL56_07130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_07130 PF00072 Response regulator receiver domain AVL56_07130 PF01627 Hpt domain AVL56_07135 PF08411 Exonuclease C-terminal AVL56_07135 PF00929 Exonuclease AVL56_07145 PF00990 Diguanylate cyclase, GGDEF domain AVL56_07145 PF17151 Periplasmic sensor domain AVL56_07150 PF02803 Thiolase, C-terminal domain AVL56_07150 PF00108 Thiolase, N-terminal domain AVL56_07155 PF13411 MerR HTH family regulatory protein AVL56_07160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL56_07160 PF02770 Acyl-CoA dehydrogenase, middle domain AVL56_07160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL56_07165 PF01039 Carboxyl transferase domain AVL56_07170 PF00378 Enoyl-CoA hydratase/isomerase AVL56_07175 PF00289 Biotin carboxylase, N-terminal domain AVL56_07175 PF00364 Biotin-requiring enzyme AVL56_07175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVL56_07175 PF02785 Biotin carboxylase C-terminal domain AVL56_07175 PF18140 Propionyl-coenzyme A carboxylase BT domain AVL56_07180 PF00682 HMGL-like AVL56_07190 PF03707 Bacterial signalling protein N terminal repeat AVL56_07190 PF00990 Diguanylate cyclase, GGDEF domain AVL56_07190 PF00563 EAL domain AVL56_07205 PF01156 Inosine-uridine preferring nucleoside hydrolase AVL56_07210 PF00483 Nucleotidyl transferase AVL56_07220 PF07690 Major Facilitator Superfamily AVL56_07255 PF03372 Endonuclease/Exonuclease/phosphatase family AVL56_07275 PF12704 MacB-like periplasmic core domain AVL56_07275 PF02687 FtsX-like permease family AVL56_07285 PF00271 Helicase conserved C-terminal domain AVL56_07285 PF03461 TRCF domain AVL56_07285 PF17757 UvrB interaction domain AVL56_07285 PF00270 DEAD/DEAH box helicase AVL56_07285 PF02559 CarD-like/TRCF domain AVL56_07295 PF01923 Cobalamin adenosyltransferase AVL56_07300 PF00939 Sodium:sulfate symporter transmembrane region AVL56_07305 PF00933 Glycosyl hydrolase family 3 N terminal domain AVL56_07310 PF01804 Penicillin amidase AVL56_07315 PF04073 Aminoacyl-tRNA editing domain AVL56_07325 PF00216 Bacterial DNA-binding protein AVL56_07330 PF03483 B3/4 domain AVL56_07330 PF03484 tRNA synthetase B5 domain AVL56_07330 PF01588 Putative tRNA binding domain AVL56_07330 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AVL56_07330 PF03147 Ferredoxin-fold anticodon binding domain AVL56_07335 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AVL56_07335 PF01409 tRNA synthetases class II core domain (F) AVL56_07340 PF01757 Acyltransferase family AVL56_07345 PF01757 Acyltransferase family AVL56_07350 PF01757 Acyltransferase family AVL56_07355 PF01757 Acyltransferase family AVL56_07360 PF00535 Glycosyl transferase family 2 AVL56_07365 PF00534 Glycosyl transferases group 1 AVL56_07365 PF13579 Glycosyl transferase 4-like domain AVL56_07385 PF00534 Glycosyl transferases group 1 AVL56_07385 PF13439 Glycosyltransferase Family 4 AVL56_07395 PF00535 Glycosyl transferase family 2 AVL56_07400 PF13477 Glycosyl transferase 4-like AVL56_07400 PF00534 Glycosyl transferases group 1 AVL56_07410 PF13439 Glycosyltransferase Family 4 AVL56_07410 PF00534 Glycosyl transferases group 1 AVL56_07420 PF03707 Bacterial signalling protein N terminal repeat AVL56_07420 PF00563 EAL domain AVL56_07420 PF00990 Diguanylate cyclase, GGDEF domain AVL56_07450 PF13614 AAA domain AVL56_07455 PF10531 SLBB domain AVL56_07455 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AVL56_07455 PF02563 Polysaccharide biosynthesis/export protein AVL56_07475 PF00453 Ribosomal protein L20 AVL56_07480 PF01632 Ribosomal protein L35 AVL56_07485 PF00707 Translation initiation factor IF-3, C-terminal domain AVL56_07485 PF05198 Translation initiation factor IF-3, N-terminal domain AVL56_07490 PF03129 Anticodon binding domain AVL56_07490 PF02824 TGS domain AVL56_07490 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVL56_07490 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AVL56_07525 PF01425 Amidase AVL56_07535 PF01925 Sulfite exporter TauE/SafE AVL56_07540 PF00266 Aminotransferase class-V AVL56_07545 PF07687 Peptidase dimerisation domain AVL56_07545 PF01546 Peptidase family M20/M25/M40 AVL56_07555 PF00962 Adenosine/AMP deaminase AVL56_07560 PF00860 Permease family AVL56_07565 PF07715 TonB-dependent Receptor Plug Domain AVL56_07565 PF00593 TonB dependent receptor AVL56_07575 PF00072 Response regulator receiver domain AVL56_07575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_07575 PF00512 His Kinase A (phospho-acceptor) domain AVL56_07575 PF09308 LuxQ, periplasmic AVL56_07580 PF00990 Diguanylate cyclase, GGDEF domain AVL56_07580 PF00072 Response regulator receiver domain AVL56_07585 PF00990 Diguanylate cyclase, GGDEF domain AVL56_07585 PF03707 Bacterial signalling protein N terminal repeat AVL56_07585 PF00563 EAL domain AVL56_07595 PF00962 Adenosine/AMP deaminase AVL56_07600 PF00860 Permease family AVL56_07615 PF00440 Bacterial regulatory proteins, tetR family AVL56_07615 PF08362 YcdC-like protein, C-terminal region AVL56_07620 PF01799 [2Fe-2S] binding domain AVL56_07620 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL56_07625 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVL56_07625 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL56_07640 PF00576 HIUase/Transthyretin family AVL56_07645 PF01979 Amidohydrolase family AVL56_07655 PF08448 PAS fold AVL56_07655 PF13426 PAS domain AVL56_07655 PF00563 EAL domain AVL56_07655 PF00990 Diguanylate cyclase, GGDEF domain AVL56_07655 PF05231 MASE1 AVL56_07655 PF08447 PAS fold AVL56_07675 PF00990 Diguanylate cyclase, GGDEF domain AVL56_07675 PF17158 Membrane-associated sensor, integral membrane domain AVL56_07690 PF04209 homogentisate 1,2-dioxygenase AVL56_07695 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL56_07710 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AVL56_07715 PF03960 ArsC family AVL56_07720 PF01546 Peptidase family M20/M25/M40 AVL56_07720 PF07687 Peptidase dimerisation domain AVL56_07735 PF01906 Putative heavy-metal-binding AVL56_07745 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AVL56_07750 PF00990 Diguanylate cyclase, GGDEF domain AVL56_07750 PF00563 EAL domain AVL56_07750 PF03707 Bacterial signalling protein N terminal repeat AVL56_07755 PF00343 Carbohydrate phosphorylase AVL56_07760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVL56_07760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVL56_07760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVL56_07760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVL56_07765 PF03925 SeqA protein C-terminal domain AVL56_07765 PF17206 SeqA protein N-terminal domain AVL56_07770 PF07726 ATPase family associated with various cellular activities (AAA) AVL56_07770 PF17863 AAA lid domain AVL56_07780 PF11992 Domain of unknown function (DUF3488) AVL56_07780 PF13559 Domain of unknown function (DUF4129) AVL56_07780 PF01841 Transglutaminase-like superfamily AVL56_07785 PF01226 Formate/nitrite transporter AVL56_07790 PF00069 Protein kinase domain AVL56_07790 PF03793 PASTA domain AVL56_07795 PF02560 Cyanate lyase C-terminal domain AVL56_07800 PF00679 Elongation factor G C-terminus AVL56_07800 PF14492 Elongation Factor G, domain II AVL56_07800 PF03764 Elongation factor G, domain IV AVL56_07800 PF00009 Elongation factor Tu GTP binding domain AVL56_07800 PF03144 Elongation factor Tu domain 2 AVL56_07805 PF18125 RlmM ferredoxin-like domain AVL56_07805 PF01728 FtsJ-like methyltransferase AVL56_07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_07820 PF03466 LysR substrate binding domain AVL56_07830 PF00793 DAHP synthetase I family AVL56_07835 PF04247 Invasion gene expression up-regulator, SirB AVL56_07840 PF11849 Domain of unknown function (DUF3369) AVL56_07845 PF13847 Methyltransferase domain AVL56_07845 PF17827 PrmC N-terminal domain AVL56_07850 PF03462 PCRF domain AVL56_07850 PF00472 RF-1 domain AVL56_07855 PF01488 Shikimate / quinate 5-dehydrogenase AVL56_07855 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AVL56_07855 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AVL56_07860 PF03550 Outer membrane lipoprotein LolB AVL56_07865 PF08544 GHMP kinases C terminal AVL56_07865 PF00288 GHMP kinases N terminal domain AVL56_07875 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AVL56_07875 PF14572 Phosphoribosyl synthetase-associated domain AVL56_07880 PF08448 PAS fold AVL56_07880 PF08447 PAS fold AVL56_07880 PF00990 Diguanylate cyclase, GGDEF domain AVL56_07880 PF00563 EAL domain AVL56_07890 PF00107 Zinc-binding dehydrogenase AVL56_07890 PF08240 Alcohol dehydrogenase GroES-like domain AVL56_07895 PF14693 Ribosomal protein TL5, C-terminal domain AVL56_07895 PF01386 Ribosomal L25p family AVL56_07900 PF01195 Peptidyl-tRNA hydrolase AVL56_07905 PF01926 50S ribosome-binding GTPase AVL56_07905 PF06071 Protein of unknown function (DUF933) AVL56_07910 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AVL56_07935 PF01235 Sodium:alanine symporter family AVL56_07940 PF01613 Flavin reductase like domain AVL56_07955 PF01494 FAD binding domain AVL56_07960 PF04055 Radical SAM superfamily AVL56_07960 PF01938 TRAM domain AVL56_07960 PF00919 Uncharacterized protein family UPF0004 AVL56_07965 PF02562 PhoH-like protein AVL56_07970 PF02130 Uncharacterized protein family UPF0054 AVL56_07975 PF00571 CBS domain AVL56_07975 PF03471 Transporter associated domain AVL56_07980 PF00795 Carbon-nitrogen hydrolase AVL56_07985 PF01515 Phosphate acetyl/butaryl transferase AVL56_07985 PF07085 DRTGG domain AVL56_07990 PF00871 Acetokinase family AVL56_07995 PF00011 Hsp20/alpha crystallin family AVL56_08015 PF12729 Four helix bundle sensory module for signal transduction AVL56_08015 PF00672 HAMP domain AVL56_08015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_08020 PF01272 Transcription elongation factor, GreA/GreB, C-term AVL56_08020 PF03449 Transcription elongation factor, N-terminal AVL56_08025 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AVL56_08025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVL56_08025 PF02142 MGS-like domain AVL56_08030 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AVL56_08030 PF00117 Glutamine amidotransferase class-I AVL56_08035 PF05173 Dihydrodipicolinate reductase, C-terminus AVL56_08035 PF01113 Dihydrodipicolinate reductase, N-terminus AVL56_08045 PF16177 Acetyl-coenzyme A synthetase N-terminus AVL56_08045 PF13193 AMP-binding enzyme C-terminal domain AVL56_08045 PF00501 AMP-binding enzyme AVL56_08050 PF00990 Diguanylate cyclase, GGDEF domain AVL56_08050 PF00360 Phytochrome region AVL56_08050 PF00563 EAL domain AVL56_08050 PF01590 GAF domain AVL56_08055 PF01322 Cytochrome C' AVL56_08060 PF00226 DnaJ domain AVL56_08060 PF01556 DnaJ C terminal domain AVL56_08060 PF00684 DnaJ central domain AVL56_08065 PF00012 Hsp70 protein AVL56_08070 PF01025 GrpE AVL56_08075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_08075 PF00512 His Kinase A (phospho-acceptor) domain AVL56_08075 PF09308 LuxQ, periplasmic AVL56_08075 PF00072 Response regulator receiver domain AVL56_08080 PF00072 Response regulator receiver domain AVL56_08080 PF00196 Bacterial regulatory proteins, luxR family AVL56_08085 PF00593 TonB dependent receptor AVL56_08085 PF07715 TonB-dependent Receptor Plug Domain AVL56_08095 PF00561 alpha/beta hydrolase fold AVL56_08110 PF01513 ATP-NAD kinase AVL56_08115 PF02463 RecF/RecN/SMC N terminal domain AVL56_08120 PF04355 SmpA / OmlA family AVL56_08125 PF05724 Thiopurine S-methyltransferase (TPMT) AVL56_08130 PF04286 Protein of unknown function (DUF445) AVL56_08135 PF03960 ArsC family AVL56_08145 PF12464 Maltose acetyltransferase AVL56_08145 PF14602 Hexapeptide repeat of succinyl-transferase AVL56_08150 PF00248 Aldo/keto reductase family AVL56_08160 PF01479 S4 domain AVL56_08160 PF00849 RNA pseudouridylate synthase AVL56_08165 PF04079 Segregation and condensation complex subunit ScpB AVL56_08170 PF02616 Segregation and condensation protein ScpA AVL56_08175 PF01300 Telomere recombination AVL56_08180 PF02811 PHP domain AVL56_08185 PF04715 Anthranilate synthase component I, N terminal region AVL56_08185 PF00425 chorismate binding enzyme AVL56_08190 PF00117 Glutamine amidotransferase class-I AVL56_08195 PF02885 Glycosyl transferase family, helical bundle domain AVL56_08195 PF00591 Glycosyl transferase family, a/b domain AVL56_08200 PF00218 Indole-3-glycerol phosphate synthase AVL56_08200 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AVL56_08205 PF00291 Pyridoxal-phosphate dependent enzyme AVL56_08210 PF00290 Tryptophan synthase alpha chain AVL56_08215 PF03795 YCII-related domain AVL56_08230 PF00072 Response regulator receiver domain AVL56_08230 PF00486 Transcriptional regulatory protein, C terminal AVL56_08235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_08235 PF08918 PhoQ Sensor AVL56_08240 PF01594 AI-2E family transporter AVL56_08245 PF02152 Dihydroneopterin aldolase AVL56_08250 PF08338 Domain of unknown function (DUF1731) AVL56_08250 PF01370 NAD dependent epimerase/dehydratase family AVL56_08260 PF00005 ABC transporter AVL56_08265 PF13472 GDSL-like Lipase/Acylhydrolase family AVL56_08280 PF01207 Dihydrouridine synthase (Dus) AVL56_08305 PF00749 tRNA synthetases class I (E and Q), catalytic domain AVL56_08325 PF00486 Transcriptional regulatory protein, C terminal AVL56_08325 PF00072 Response regulator receiver domain AVL56_08335 PF04055 Radical SAM superfamily AVL56_08335 PF06463 Molybdenum Cofactor Synthesis C AVL56_08340 PF00005 ABC transporter AVL56_08340 PF00664 ABC transporter transmembrane region AVL56_08355 PF01474 Class-II DAHP synthetase family AVL56_08360 PF00005 ABC transporter AVL56_08365 PF01032 FecCD transport family AVL56_08370 PF01451 Low molecular weight phosphotyrosine protein phosphatase AVL56_08375 PF03575 Peptidase family S51 AVL56_08385 PF12697 Alpha/beta hydrolase family AVL56_08385 PF08241 Methyltransferase domain AVL56_08390 PF00155 Aminotransferase class I and II AVL56_08395 PF04055 Radical SAM superfamily AVL56_08395 PF06968 Biotin and Thiamin Synthesis associated domain AVL56_08400 PF00202 Aminotransferase class-III AVL56_08415 PF00583 Acetyltransferase (GNAT) family AVL56_08420 PF18030 RimK PreATP-grasp domain AVL56_08420 PF08443 RimK-like ATP-grasp domain AVL56_08425 PF01699 Sodium/calcium exchanger protein AVL56_08435 PF01336 OB-fold nucleic acid binding domain AVL56_08435 PF00152 tRNA synthetases class II (D, K and N) AVL56_08445 PF04403 Paraquat-inducible protein A AVL56_08450 PF02470 MlaD protein AVL56_08460 PF00990 Diguanylate cyclase, GGDEF domain AVL56_08465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL56_08470 PF00873 AcrB/AcrD/AcrF family AVL56_08480 PF03466 LysR substrate binding domain AVL56_08480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_08485 PF08361 MAATS-type transcriptional repressor, C-terminal region AVL56_08485 PF00440 Bacterial regulatory proteins, tetR family AVL56_08495 PF00873 AcrB/AcrD/AcrF family AVL56_08500 PF00571 CBS domain AVL56_08505 PF08240 Alcohol dehydrogenase GroES-like domain AVL56_08505 PF00107 Zinc-binding dehydrogenase AVL56_08510 PF08240 Alcohol dehydrogenase GroES-like domain AVL56_08510 PF00107 Zinc-binding dehydrogenase AVL56_08515 PF03466 LysR substrate binding domain AVL56_08515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_08520 PF01292 Prokaryotic cytochrome b561 AVL56_08525 PF00106 short chain dehydrogenase AVL56_08530 PF00296 Luciferase-like monooxygenase AVL56_08535 PF01118 Semialdehyde dehydrogenase, NAD binding domain AVL56_08535 PF02774 Semialdehyde dehydrogenase, dimerisation domain AVL56_08560 PF07690 Major Facilitator Superfamily AVL56_08565 PF00512 His Kinase A (phospho-acceptor) domain AVL56_08565 PF00072 Response regulator receiver domain AVL56_08565 PF09308 LuxQ, periplasmic AVL56_08565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_08605 PF00557 Metallopeptidase family M24 AVL56_08615 PF00072 Response regulator receiver domain AVL56_08615 PF00990 Diguanylate cyclase, GGDEF domain AVL56_08620 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AVL56_08640 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AVL56_08640 PF06165 Glycosyltransferase family 36 AVL56_08640 PF10091 Putative glucoamylase AVL56_08655 PF01145 SPFH domain / Band 7 family AVL56_08660 PF00990 Diguanylate cyclase, GGDEF domain AVL56_08660 PF13185 GAF domain AVL56_08670 PF02311 AraC-like ligand binding domain AVL56_08670 PF12833 Helix-turn-helix domain AVL56_08675 PF01494 FAD binding domain AVL56_08685 PF00355 Rieske [2Fe-2S] domain AVL56_08690 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL56_08690 PF00175 Oxidoreductase NAD-binding domain AVL56_08695 PF12706 Beta-lactamase superfamily domain AVL56_08700 PF00593 TonB dependent receptor AVL56_08700 PF07715 TonB-dependent Receptor Plug Domain AVL56_08715 PF00135 Carboxylesterase family AVL56_08720 PF01915 Glycosyl hydrolase family 3 C-terminal domain AVL56_08720 PF00933 Glycosyl hydrolase family 3 N terminal domain AVL56_08720 PF14310 Fibronectin type III-like domain AVL56_08725 PF00593 TonB dependent receptor AVL56_08725 PF07715 TonB-dependent Receptor Plug Domain AVL56_08730 PF00356 Bacterial regulatory proteins, lacI family AVL56_08735 PF07690 Major Facilitator Superfamily AVL56_08750 PF00881 Nitroreductase family AVL56_08760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_08760 PF03466 LysR substrate binding domain AVL56_08765 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AVL56_08780 PF00355 Rieske [2Fe-2S] domain AVL56_08785 PF00175 Oxidoreductase NAD-binding domain AVL56_08785 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL56_08790 PF01047 MarR family AVL56_08795 PF01494 FAD binding domain AVL56_08805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL56_08815 PF04199 Putative cyclase AVL56_08825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_08825 PF03466 LysR substrate binding domain AVL56_08850 PF00248 Aldo/keto reductase family AVL56_08855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVL56_08860 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AVL56_08865 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AVL56_08870 PF04909 Amidohydrolase AVL56_08875 PF04909 Amidohydrolase AVL56_08880 PF04303 PrpF protein AVL56_08885 PF03737 Aldolase/RraA AVL56_08890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_08890 PF03466 LysR substrate binding domain AVL56_08900 PF02445 Quinolinate synthetase A protein AVL56_08920 PF13174 Tetratricopeptide repeat AVL56_08920 PF16331 TolA binding protein trimerisation AVL56_08925 PF00691 OmpA family AVL56_08930 PF07676 WD40-like Beta Propeller Repeat AVL56_08930 PF04052 TolB amino-terminal domain AVL56_08940 PF02472 Biopolymer transport protein ExbD/TolR AVL56_08945 PF01618 MotA/TolQ/ExbB proton channel family AVL56_08950 PF03061 Thioesterase superfamily AVL56_08955 PF05491 RuvB C-terminal winged helix domain AVL56_08955 PF05496 Holliday junction DNA helicase RuvB P-loop domain AVL56_08955 PF17864 RuvB AAA lid domain AVL56_08960 PF07499 RuvA, C-terminal domain AVL56_08960 PF01330 RuvA N terminal domain AVL56_08965 PF02075 Crossover junction endodeoxyribonuclease RuvC AVL56_08970 PF00293 NUDIX domain AVL56_08975 PF02938 GAD domain AVL56_08975 PF00152 tRNA synthetases class II (D, K and N) AVL56_08975 PF01336 OB-fold nucleic acid binding domain AVL56_08990 PF00072 Response regulator receiver domain AVL56_08990 PF00158 Sigma-54 interaction domain AVL56_09000 PF00512 His Kinase A (phospho-acceptor) domain AVL56_09000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_09010 PF03707 Bacterial signalling protein N terminal repeat AVL56_09010 PF00990 Diguanylate cyclase, GGDEF domain AVL56_09010 PF00563 EAL domain AVL56_09020 PF00072 Response regulator receiver domain AVL56_09020 PF00990 Diguanylate cyclase, GGDEF domain AVL56_09030 PF01253 Translation initiation factor SUI1 AVL56_09035 PF00072 Response regulator receiver domain AVL56_09040 PF01817 Chorismate mutase type II AVL56_09040 PF00800 Prephenate dehydratase AVL56_09045 PF12729 Four helix bundle sensory module for signal transduction AVL56_09045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_09045 PF00672 HAMP domain AVL56_09050 PF01817 Chorismate mutase type II AVL56_09050 PF02153 Prephenate dehydrogenase AVL56_09055 PF00793 DAHP synthetase I family AVL56_09060 PF03458 UPF0126 domain AVL56_09075 PF01245 Ribosomal protein L19 AVL56_09080 PF01746 tRNA (Guanine-1)-methyltransferase AVL56_09085 PF05239 PRC-barrel domain AVL56_09085 PF01782 RimM N-terminal domain AVL56_09090 PF00886 Ribosomal protein S16 AVL56_09105 PF01053 Cys/Met metabolism PLP-dependent enzyme AVL56_09110 PF00005 ABC transporter AVL56_09110 PF00664 ABC transporter transmembrane region AVL56_09115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL56_09120 PF00873 AcrB/AcrD/AcrF family AVL56_09125 PF03600 Citrate transporter AVL56_09155 PF00448 SRP54-type protein, GTPase domain AVL56_09155 PF02881 SRP54-type protein, helical bundle domain AVL56_09155 PF02978 Signal peptide binding domain AVL56_09160 PF01578 Cytochrome C assembly protein AVL56_09165 PF00571 CBS domain AVL56_09165 PF03471 Transporter associated domain AVL56_09165 PF01595 Cyclin M transmembrane N-terminal domain AVL56_09175 PF00300 Histidine phosphatase superfamily (branch 1) AVL56_09180 PF16187 Middle or third domain of peptidase_M16 AVL56_09180 PF00675 Insulinase (Peptidase family M16) AVL56_09180 PF05193 Peptidase M16 inactive domain AVL56_09185 PF03707 Bacterial signalling protein N terminal repeat AVL56_09185 PF00990 Diguanylate cyclase, GGDEF domain AVL56_09185 PF00563 EAL domain AVL56_09195 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVL56_09195 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVL56_09195 PF00378 Enoyl-CoA hydratase/isomerase AVL56_09200 PF02803 Thiolase, C-terminal domain AVL56_09200 PF00108 Thiolase, N-terminal domain AVL56_09205 PF17863 AAA lid domain AVL56_09205 PF07726 ATPase family associated with various cellular activities (AAA) AVL56_09210 PF01882 Protein of unknown function DUF58 AVL56_09220 PF00092 von Willebrand factor type A domain AVL56_09225 PF07584 Aerotolerance regulator N-terminal AVL56_09225 PF00092 von Willebrand factor type A domain AVL56_09240 PF04545 Sigma-70, region 4 AVL56_09240 PF04542 Sigma-70 region 2 AVL56_09250 PF00990 Diguanylate cyclase, GGDEF domain AVL56_09250 PF17158 Membrane-associated sensor, integral membrane domain AVL56_09255 PF00474 Sodium:solute symporter family AVL56_09260 PF01507 Phosphoadenosine phosphosulfate reductase family AVL56_09270 PF00459 Inositol monophosphatase family AVL56_09275 PF00009 Elongation factor Tu GTP binding domain AVL56_09280 PF02080 TrkA-C domain AVL56_09280 PF03600 Citrate transporter AVL56_09305 PF00733 Asparagine synthase AVL56_09305 PF13537 Glutamine amidotransferase domain AVL56_09315 PF04055 Radical SAM superfamily AVL56_09320 PF06508 Queuosine biosynthesis protein QueC AVL56_09340 PF00271 Helicase conserved C-terminal domain AVL56_09340 PF17757 UvrB interaction domain AVL56_09340 PF12344 Ultra-violet resistance protein B AVL56_09340 PF02151 UvrB/uvrC motif AVL56_09340 PF04851 Type III restriction enzyme, res subunit AVL56_09345 PF01554 MatE AVL56_09360 PF02508 Rnf-Nqr subunit, membrane protein AVL56_09365 PF04060 Putative Fe-S cluster AVL56_09370 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AVL56_09370 PF12838 4Fe-4S dicluster domain AVL56_09370 PF13375 RnfC Barrel sandwich hybrid domain AVL56_09370 PF10531 SLBB domain AVL56_09375 PF03116 NQR2, RnfD, RnfE family AVL56_09380 PF04205 FMN-binding domain AVL56_09385 PF02508 Rnf-Nqr subunit, membrane protein AVL56_09390 PF00730 HhH-GPD superfamily base excision DNA repair protein AVL56_09390 PF00633 Helix-hairpin-helix motif AVL56_09390 PF10576 Iron-sulfur binding domain of endonuclease III AVL56_09400 PF00144 Beta-lactamase AVL56_09410 PF00561 alpha/beta hydrolase fold AVL56_09415 PF00326 Prolyl oligopeptidase family AVL56_09415 PF07676 WD40-like Beta Propeller Repeat AVL56_09420 PF02225 PA domain AVL56_09420 PF04389 Peptidase family M28 AVL56_09430 PF03707 Bacterial signalling protein N terminal repeat AVL56_09430 PF00563 EAL domain AVL56_09430 PF00990 Diguanylate cyclase, GGDEF domain AVL56_09440 PF00313 'Cold-shock' DNA-binding domain AVL56_09445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL56_09450 PF03009 Glycerophosphoryl diester phosphodiesterase family AVL56_09455 PF18393 MotY N-terminal domain AVL56_09455 PF00691 OmpA family AVL56_09460 PF00929 Exonuclease AVL56_09465 PF00578 AhpC/TSA family AVL56_09465 PF10417 C-terminal domain of 1-Cys peroxiredoxin AVL56_09470 PF04324 BFD-like [2Fe-2S] binding domain AVL56_09490 PF00593 TonB dependent receptor AVL56_09490 PF07715 TonB-dependent Receptor Plug Domain AVL56_09495 PF00462 Glutaredoxin AVL56_09500 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AVL56_09500 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AVL56_09505 PF08298 PrkA AAA domain AVL56_09505 PF06798 PrkA serine protein kinase C-terminal domain AVL56_09510 PF04285 Protein of unknown function (DUF444) AVL56_09515 PF04293 SpoVR like protein AVL56_09530 PF01264 Chorismate synthase AVL56_09535 PF05175 Methyltransferase small domain AVL56_09540 PF01713 Smr domain AVL56_09545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_09545 PF00512 His Kinase A (phospho-acceptor) domain AVL56_09545 PF00989 PAS fold AVL56_09550 PF00158 Sigma-54 interaction domain AVL56_09550 PF02954 Bacterial regulatory protein, Fis family AVL56_09550 PF00072 Response regulator receiver domain AVL56_09555 PF00005 ABC transporter AVL56_09555 PF02687 FtsX-like permease family AVL56_09555 PF12704 MacB-like periplasmic core domain AVL56_09565 PF00005 ABC transporter AVL56_09585 PF04262 Glutamate-cysteine ligase AVL56_09590 PF00675 Insulinase (Peptidase family M16) AVL56_09590 PF05193 Peptidase M16 inactive domain AVL56_09600 PF00849 RNA pseudouridylate synthase AVL56_09605 PF02558 Ketopantoate reductase PanE/ApbA AVL56_09605 PF08546 Ketopantoate reductase PanE/ApbA C terminal AVL56_09610 PF01336 OB-fold nucleic acid binding domain AVL56_09610 PF00152 tRNA synthetases class II (D, K and N) AVL56_09615 PF00472 RF-1 domain AVL56_09615 PF03462 PCRF domain AVL56_09630 PF01966 HD domain AVL56_09635 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AVL56_09635 PF06155 Protein of unknown function (DUF971) AVL56_09650 PF00563 EAL domain AVL56_09650 PF00990 Diguanylate cyclase, GGDEF domain AVL56_09650 PF03707 Bacterial signalling protein N terminal repeat AVL56_09655 PF03485 Arginyl tRNA synthetase N terminal domain AVL56_09655 PF00750 tRNA synthetases class I (R) AVL56_09655 PF05746 DALR anticodon binding domain AVL56_09660 PF16658 Class II release factor RF3, C-terminal domain AVL56_09660 PF00009 Elongation factor Tu GTP binding domain AVL56_09660 PF03144 Elongation factor Tu domain 2 AVL56_09665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_09665 PF03466 LysR substrate binding domain AVL56_09680 PF00583 Acetyltransferase (GNAT) family AVL56_09720 PF17176 tRNA-binding domain AVL56_09720 PF08351 Domain of unknown function (DUF1726) AVL56_09720 PF13718 GNAT acetyltransferase 2 AVL56_09720 PF05127 Helicase AVL56_09730 PF03544 Gram-negative bacterial TonB protein C-terminal AVL56_09735 PF02472 Biopolymer transport protein ExbD/TolR AVL56_09740 PF01618 MotA/TolQ/ExbB proton channel family AVL56_09745 PF01618 MotA/TolQ/ExbB proton channel family AVL56_09780 PF00593 TonB dependent receptor AVL56_09780 PF07715 TonB-dependent Receptor Plug Domain AVL56_09785 PF00593 TonB dependent receptor AVL56_09790 PF03301 Tryptophan 2,3-dioxygenase AVL56_09805 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AVL56_09805 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AVL56_09810 PF01037 Lrp/AsnC ligand binding domain AVL56_09815 PF02798 Glutathione S-transferase, N-terminal domain AVL56_09815 PF14497 Glutathione S-transferase, C-terminal domain AVL56_09825 PF18024 Helix-turn-helix domain AVL56_09825 PF00158 Sigma-54 interaction domain AVL56_09830 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AVL56_09840 PF06667 Phage shock protein B AVL56_09845 PF04012 PspA/IM30 family AVL56_09850 PF00158 Sigma-54 interaction domain AVL56_09850 PF02954 Bacterial regulatory protein, Fis family AVL56_09855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVL56_09860 PF00528 Binding-protein-dependent transport system inner membrane component AVL56_09865 PF12911 N-terminal TM domain of oligopeptide transport permease C AVL56_09865 PF00528 Binding-protein-dependent transport system inner membrane component AVL56_09870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVL56_09870 PF00005 ABC transporter AVL56_09875 PF00005 ABC transporter AVL56_09880 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AVL56_09885 PF00364 Biotin-requiring enzyme AVL56_09885 PF02436 Conserved carboxylase domain AVL56_09885 PF00682 HMGL-like AVL56_09895 PF03061 Thioesterase superfamily AVL56_09915 PF02599 Global regulator protein family AVL56_09935 PF05649 Peptidase family M13 AVL56_09935 PF01431 Peptidase family M13 AVL56_09940 PF00440 Bacterial regulatory proteins, tetR family AVL56_09940 PF13977 BetI-type transcriptional repressor, C-terminal AVL56_09950 PF01740 STAS domain AVL56_09950 PF00916 Sulfate permease family AVL56_09955 PF00484 Carbonic anhydrase AVL56_09960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_09960 PF03466 LysR substrate binding domain AVL56_09965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_09965 PF03466 LysR substrate binding domain AVL56_09975 PF02310 B12 binding domain AVL56_09975 PF02607 B12 binding domain AVL56_09975 PF02965 Vitamin B12 dependent methionine synthase, activation domain AVL56_09975 PF02574 Homocysteine S-methyltransferase AVL56_09975 PF00809 Pterin binding enzyme AVL56_09980 PF00809 Pterin binding enzyme AVL56_09980 PF02574 Homocysteine S-methyltransferase AVL56_09980 PF02607 B12 binding domain AVL56_09980 PF02965 Vitamin B12 dependent methionine synthase, activation domain AVL56_09980 PF02310 B12 binding domain AVL56_09985 PF04204 Homoserine O-succinyltransferase AVL56_09995 PF01584 CheW-like domain AVL56_10005 PF13614 AAA domain AVL56_10010 PF00072 Response regulator receiver domain AVL56_10010 PF01339 CheB methylesterase AVL56_10015 PF00072 Response regulator receiver domain AVL56_10015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_10015 PF02895 Signal transducing histidine kinase, homodimeric domain AVL56_10015 PF01584 CheW-like domain AVL56_10015 PF01627 Hpt domain AVL56_10020 PF04344 Chemotaxis phosphatase, CheZ AVL56_10025 PF00072 Response regulator receiver domain AVL56_10030 PF04542 Sigma-70 region 2 AVL56_10030 PF04539 Sigma-70 region 3 AVL56_10030 PF04545 Sigma-70, region 4 AVL56_10035 PF10609 NUBPL iron-transfer P-loop NTPase AVL56_10040 PF00448 SRP54-type protein, GTPase domain AVL56_10045 PF00771 FHIPEP family AVL56_10050 PF01312 FlhB HrpN YscU SpaS Family AVL56_10055 PF01311 Bacterial export proteins, family 1 AVL56_10060 PF01313 Bacterial export proteins, family 3 AVL56_10065 PF00813 FliP family AVL56_10070 PF04347 Flagellar biosynthesis protein, FliO AVL56_10075 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AVL56_10080 PF02154 Flagellar motor switch protein FliM AVL56_10080 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AVL56_10100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVL56_10100 PF18269 T3SS EscN ATPase C-terminal domain AVL56_10110 PF14841 FliG middle domain AVL56_10110 PF14842 FliG N-terminal domain AVL56_10110 PF01706 FliG C-terminal domain AVL56_10115 PF01514 Secretory protein of YscJ/FliF family AVL56_10115 PF08345 Flagellar M-ring protein C-terminal AVL56_10120 PF02049 Flagellar hook-basal body complex protein FliE AVL56_10125 PF00072 Response regulator receiver domain AVL56_10125 PF00158 Sigma-54 interaction domain AVL56_10125 PF02954 Bacterial regulatory protein, Fis family AVL56_10130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_10130 PF00512 His Kinase A (phospho-acceptor) domain AVL56_10130 PF13188 PAS domain AVL56_10135 PF06490 Flagellar regulatory protein FleQ AVL56_10135 PF02954 Bacterial regulatory protein, Fis family AVL56_10135 PF00158 Sigma-54 interaction domain AVL56_10140 PF00700 Bacterial flagellin C-terminal helical region AVL56_10140 PF08884 Flagellin D3 domain AVL56_10140 PF00669 Bacterial flagellin N-terminal helical region AVL56_10145 PF02719 Polysaccharide biosynthesis protein AVL56_10150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AVL56_10155 PF02348 Cytidylyltransferase AVL56_10165 PF08666 SAF domain AVL56_10165 PF03102 NeuB family AVL56_10180 PF13193 AMP-binding enzyme C-terminal domain AVL56_10180 PF00501 AMP-binding enzyme AVL56_10190 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AVL56_10205 PF02348 Cytidylyltransferase AVL56_10205 PF13472 GDSL-like Lipase/Acylhydrolase family AVL56_10220 PF03102 NeuB family AVL56_10220 PF08666 SAF domain AVL56_10225 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AVL56_10230 PF16363 GDP-mannose 4,6 dehydratase AVL56_10240 PF17101 Stealth protein CR1, conserved region 1 AVL56_10240 PF11380 Stealth protein CR2, conserved region 2 AVL56_10240 PF17102 Stealth protein CR3, conserved region 3 AVL56_10255 PF02561 Flagellar protein FliS AVL56_10260 PF07196 Flagellin hook IN motif AVL56_10260 PF07195 Flagellar hook-associated protein 2 C-terminus AVL56_10260 PF02465 Flagellar hook-associated protein 2 N-terminus AVL56_10265 PF03646 FlaG protein AVL56_10270 PF00669 Bacterial flagellin N-terminal helical region AVL56_10270 PF00700 Bacterial flagellin C-terminal helical region AVL56_10270 PF07196 Flagellin hook IN motif AVL56_10275 PF07196 Flagellin hook IN motif AVL56_10275 PF00669 Bacterial flagellin N-terminal helical region AVL56_10275 PF00700 Bacterial flagellin C-terminal helical region AVL56_10280 PF00700 Bacterial flagellin C-terminal helical region AVL56_10280 PF07196 Flagellin hook IN motif AVL56_10280 PF00669 Bacterial flagellin N-terminal helical region AVL56_10295 PF00460 Flagella basal body rod protein AVL56_10295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVL56_10300 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AVL56_10300 PF10135 Rod binding protein AVL56_10305 PF02119 Flagellar P-ring protein AVL56_10310 PF02107 Flagellar L-ring protein AVL56_10315 PF00460 Flagella basal body rod protein AVL56_10315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVL56_10320 PF00460 Flagella basal body rod protein AVL56_10320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVL56_10325 PF07559 Flagellar basal body protein FlaE AVL56_10325 PF00460 Flagella basal body rod protein AVL56_10325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVL56_10330 PF13860 FlgD Ig-like domain AVL56_10330 PF13861 FlgD Tudor-like domain AVL56_10330 PF03963 Flagellar hook capping protein - N-terminal region AVL56_10335 PF00460 Flagella basal body rod protein AVL56_10335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVL56_10340 PF00460 Flagella basal body rod protein AVL56_10345 PF01739 CheR methyltransferase, SAM binding domain AVL56_10345 PF03705 CheR methyltransferase, all-alpha domain AVL56_10350 PF00072 Response regulator receiver domain AVL56_10350 PF01584 CheW-like domain AVL56_10390 PF00072 Response regulator receiver domain AVL56_10390 PF00196 Bacterial regulatory proteins, luxR family AVL56_10395 PF00529 HlyD membrane-fusion protein of T1SS AVL56_10395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL56_10400 PF00005 ABC transporter AVL56_10400 PF03412 Peptidase C39 family AVL56_10400 PF00664 ABC transporter transmembrane region AVL56_10405 PF00691 OmpA family AVL56_10405 PF00223 Photosystem I psaA/psaB protein AVL56_10500 PF00849 RNA pseudouridylate synthase AVL56_10500 PF01479 S4 domain AVL56_10510 PF00581 Rhodanese-like domain AVL56_10510 PF17773 UPF0176 acylphosphatase like domain AVL56_10520 PF00072 Response regulator receiver domain AVL56_10520 PF00486 Transcriptional regulatory protein, C terminal AVL56_10530 PF00365 Phosphofructokinase AVL56_10535 PF00072 Response regulator receiver domain AVL56_10535 PF04397 LytTr DNA-binding domain AVL56_10540 PF07694 5TMR of 5TMR-LYT AVL56_10540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_10540 PF06580 Histidine kinase AVL56_10560 PF01476 LysM domain AVL56_10560 PF01551 Peptidase family M23 AVL56_10570 PF04245 37-kD nucleoid-associated bacterial protein AVL56_10575 PF07208 Protein of unknown function (DUF1414) AVL56_10580 PF11893 Domain of unknown function (DUF3413) AVL56_10580 PF00884 Sulfatase AVL56_10585 PF08645 Polynucleotide kinase 3 phosphatase AVL56_10590 PF13847 Methyltransferase domain AVL56_10595 PF00378 Enoyl-CoA hydratase/isomerase AVL56_10600 PF02770 Acyl-CoA dehydrogenase, middle domain AVL56_10600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL56_10600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL56_10610 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AVL56_10610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVL56_10615 PF00255 Glutathione peroxidase AVL56_10620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVL56_10620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL56_10625 PF13847 Methyltransferase domain AVL56_10630 PF01784 NIF3 (NGG1p interacting factor 3) AVL56_10650 PF00440 Bacterial regulatory proteins, tetR family AVL56_10655 PF01343 Peptidase family S49 AVL56_10655 PF08496 Peptidase family S49 N-terminal AVL56_10660 PF01804 Penicillin amidase AVL56_10665 PF12262 Bacterial virulence factor lipase N-terminal AVL56_10670 PF00106 short chain dehydrogenase AVL56_10675 PF00749 tRNA synthetases class I (E and Q), catalytic domain AVL56_10675 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AVL56_10680 PF00356 Bacterial regulatory proteins, lacI family AVL56_10685 PF00128 Alpha amylase, catalytic domain AVL56_10685 PF00686 Starch binding domain AVL56_10695 PF09087 Cyclomaltodextrinase, N-terminal AVL56_10695 PF00128 Alpha amylase, catalytic domain AVL56_10695 PF10438 Cyclo-malto-dextrinase C-terminal domain AVL56_10700 PF00128 Alpha amylase, catalytic domain AVL56_10700 PF02903 Alpha amylase, N-terminal ig-like domain AVL56_10700 PF16657 Maltogenic Amylase, C-terminal domain AVL56_10715 PF01734 Patatin-like phospholipase AVL56_10720 PF17967 Pullulanase N2 domain AVL56_10720 PF03714 Bacterial pullanase-associated domain AVL56_10720 PF18494 Pullulanase Ins domain AVL56_10720 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AVL56_10720 PF11852 Domain of unknown function (DUF3372) AVL56_10730 PF04820 Tryptophan halogenase AVL56_10740 PF02629 CoA binding domain AVL56_10740 PF00549 CoA-ligase AVL56_10745 PF08442 ATP-grasp domain AVL56_10745 PF00549 CoA-ligase AVL56_10750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AVL56_10750 PF02817 e3 binding domain AVL56_10750 PF00364 Biotin-requiring enzyme AVL56_10755 PF00676 Dehydrogenase E1 component AVL56_10755 PF16078 2-oxoglutarate dehydrogenase N-terminus AVL56_10755 PF16870 2-oxoglutarate dehydrogenase C-terminal AVL56_10755 PF02779 Transketolase, pyrimidine binding domain AVL56_10760 PF13085 2Fe-2S iron-sulfur cluster binding domain AVL56_10765 PF00890 FAD binding domain AVL56_10765 PF02910 Fumarate reductase flavoprotein C-term AVL56_10770 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AVL56_10775 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AVL56_10780 PF00285 Citrate synthase, C-terminal domain AVL56_10790 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVL56_10790 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVL56_10790 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVL56_10790 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVL56_10795 PF13409 Glutathione S-transferase, N-terminal domain AVL56_10800 PF01266 FAD dependent oxidoreductase AVL56_10805 PF00899 ThiF family AVL56_10830 PF00919 Uncharacterized protein family UPF0004 AVL56_10830 PF18693 TRAM domain AVL56_10830 PF04055 Radical SAM superfamily AVL56_10835 PF00106 short chain dehydrogenase AVL56_10840 PF02348 Cytidylyltransferase AVL56_10845 PF03966 Trm112p-like protein AVL56_10850 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AVL56_10855 PF00005 ABC transporter AVL56_10855 PF00664 ABC transporter transmembrane region AVL56_10870 PF03120 NAD-dependent DNA ligase OB-fold domain AVL56_10870 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AVL56_10870 PF12826 Helix-hairpin-helix motif AVL56_10870 PF00533 BRCA1 C Terminus (BRCT) domain AVL56_10870 PF01653 NAD-dependent DNA ligase adenylation domain AVL56_10875 PF04354 ZipA, C-terminal FtsZ-binding domain AVL56_10880 PF06470 SMC proteins Flexible Hinge Domain AVL56_10880 PF02463 RecF/RecN/SMC N terminal domain AVL56_10895 PF07719 Tetratricopeptide repeat AVL56_10895 PF13181 Tetratricopeptide repeat AVL56_10900 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AVL56_10920 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_10920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL56_10925 PF07690 Major Facilitator Superfamily AVL56_10945 PF05163 DinB family AVL56_10950 PF13181 Tetratricopeptide repeat AVL56_10955 PF00593 TonB dependent receptor AVL56_10955 PF07715 TonB-dependent Receptor Plug Domain AVL56_10960 PF02028 BCCT, betaine/carnitine/choline family transporter AVL56_10970 PF03658 RnfH family Ubiquitin AVL56_10975 PF03364 Polyketide cyclase / dehydrase and lipid transport AVL56_10980 PF01668 SmpB protein AVL56_10985 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL56_10985 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_10995 PF05840 Bacteriophage replication gene A protein (GPA) AVL56_11035 PF07715 TonB-dependent Receptor Plug Domain AVL56_11035 PF00593 TonB dependent receptor AVL56_11040 PF07690 Major Facilitator Superfamily AVL56_11045 PF00652 Ricin-type beta-trefoil lectin domain AVL56_11065 PF05199 GMC oxidoreductase AVL56_11065 PF00732 GMC oxidoreductase AVL56_11070 PF00171 Aldehyde dehydrogenase family AVL56_11080 PF04542 Sigma-70 region 2 AVL56_11080 PF08281 Sigma-70, region 4 AVL56_11085 PF04542 Sigma-70 region 2 AVL56_11085 PF08281 Sigma-70, region 4 AVL56_11090 PF12146 Serine aminopeptidase, S33 AVL56_11110 PF00593 TonB dependent receptor AVL56_11110 PF07715 TonB-dependent Receptor Plug Domain AVL56_11115 PF03466 LysR substrate binding domain AVL56_11115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_11135 PF03707 Bacterial signalling protein N terminal repeat AVL56_11135 PF00990 Diguanylate cyclase, GGDEF domain AVL56_11135 PF00563 EAL domain AVL56_11150 PF01590 GAF domain AVL56_11150 PF00990 Diguanylate cyclase, GGDEF domain AVL56_11150 PF00360 Phytochrome region AVL56_11150 PF00563 EAL domain AVL56_11165 PF01066 CDP-alcohol phosphatidyltransferase AVL56_11170 PF00005 ABC transporter AVL56_11175 PF00528 Binding-protein-dependent transport system inner membrane component AVL56_11190 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_11190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVL56_11195 PF00593 TonB dependent receptor AVL56_11195 PF07715 TonB-dependent Receptor Plug Domain AVL56_11210 PF08497 Radical SAM N-terminal AVL56_11210 PF04055 Radical SAM superfamily AVL56_11210 PF11842 Domain of unknown function (DUF3362) AVL56_11235 PF00593 TonB dependent receptor AVL56_11235 PF07715 TonB-dependent Receptor Plug Domain AVL56_11240 PF13192 Thioredoxin domain AVL56_11240 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_11245 PF10417 C-terminal domain of 1-Cys peroxiredoxin AVL56_11245 PF00578 AhpC/TSA family AVL56_11275 PF00583 Acetyltransferase (GNAT) family AVL56_11275 PF00795 Carbon-nitrogen hydrolase AVL56_11285 PF12697 Alpha/beta hydrolase family AVL56_11290 PF08448 PAS fold AVL56_11290 PF00990 Diguanylate cyclase, GGDEF domain AVL56_11300 PF05987 Bacterial protein of unknown function (DUF898) AVL56_11305 PF00312 Ribosomal protein S15 AVL56_11310 PF01509 TruB family pseudouridylate synthase (N terminal domain) AVL56_11310 PF09157 Pseudouridine synthase II TruB, C-terminal AVL56_11310 PF16198 tRNA pseudouridylate synthase B C-terminal domain AVL56_11315 PF02033 Ribosome-binding factor A AVL56_11320 PF00009 Elongation factor Tu GTP binding domain AVL56_11320 PF11987 Translation-initiation factor 2 AVL56_11320 PF08364 Bacterial translation initiation factor IF-2 associated region AVL56_11320 PF04760 Translation initiation factor IF-2, N-terminal region AVL56_11325 PF13184 NusA-like KH domain AVL56_11325 PF08529 NusA N-terminal domain AVL56_11325 PF00575 S1 RNA binding domain AVL56_11330 PF17384 RimP C-terminal SH3 domain AVL56_11330 PF02576 RimP N-terminal domain AVL56_11335 PF00072 Response regulator receiver domain AVL56_11340 PF00072 Response regulator receiver domain AVL56_11340 PF01627 Hpt domain AVL56_11340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_11340 PF00512 His Kinase A (phospho-acceptor) domain AVL56_11355 PF01329 Pterin 4 alpha carbinolamine dehydratase AVL56_11360 PF07715 TonB-dependent Receptor Plug Domain AVL56_11360 PF00593 TonB dependent receptor AVL56_11365 PF00924 Mechanosensitive ion channel AVL56_11385 PF05552 Conserved TM helix AVL56_11385 PF00924 Mechanosensitive ion channel AVL56_11390 PF01575 MaoC like domain AVL56_11395 PF03466 LysR substrate binding domain AVL56_11395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_11405 PF01232 Mannitol dehydrogenase Rossmann domain AVL56_11405 PF08125 Mannitol dehydrogenase C-terminal domain AVL56_11415 PF13419 Haloacid dehalogenase-like hydrolase AVL56_11420 PF04198 Putative sugar-binding domain AVL56_11430 PF00561 alpha/beta hydrolase fold AVL56_11435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL56_11435 PF02770 Acyl-CoA dehydrogenase, middle domain AVL56_11435 PF12806 Acetyl-CoA dehydrogenase C-terminal like AVL56_11435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL56_11440 PF02803 Thiolase, C-terminal domain AVL56_11440 PF00108 Thiolase, N-terminal domain AVL56_11445 PF00378 Enoyl-CoA hydratase/isomerase AVL56_11445 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVL56_11445 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVL56_11450 PF00561 alpha/beta hydrolase fold AVL56_11470 PF00107 Zinc-binding dehydrogenase AVL56_11470 PF08240 Alcohol dehydrogenase GroES-like domain AVL56_11480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL56_11480 PF02770 Acyl-CoA dehydrogenase, middle domain AVL56_11480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL56_11490 PF07715 TonB-dependent Receptor Plug Domain AVL56_11490 PF00593 TonB dependent receptor AVL56_11510 PF06969 HemN C-terminal domain AVL56_11510 PF04055 Radical SAM superfamily AVL56_11515 PF00005 ABC transporter AVL56_11515 PF03459 TOBE domain AVL56_11520 PF00528 Binding-protein-dependent transport system inner membrane component AVL56_11530 PF02391 MoaE protein AVL56_11535 PF02597 ThiS family AVL56_11540 PF01967 MoaC family AVL56_11545 PF00994 Probable molybdopterin binding domain AVL56_11550 PF00899 ThiF family AVL56_11700 PF00072 Response regulator receiver domain AVL56_11700 PF00672 HAMP domain AVL56_11700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_11700 PF00512 His Kinase A (phospho-acceptor) domain AVL56_11700 PF01627 Hpt domain AVL56_11700 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVL56_11710 PF00155 Aminotransferase class I and II AVL56_11715 PF03435 Saccharopine dehydrogenase NADP binding domain AVL56_11730 PF00155 Aminotransferase class I and II AVL56_11745 PF13538 UvrD-like helicase C-terminal domain AVL56_11750 PF13361 UvrD-like helicase C-terminal domain AVL56_11750 PF00580 UvrD/REP helicase N-terminal domain AVL56_11750 PF12705 PD-(D/E)XK nuclease superfamily AVL56_11755 PF17946 RecC C-terminal domain AVL56_11765 PF00501 AMP-binding enzyme AVL56_11770 PF03707 Bacterial signalling protein N terminal repeat AVL56_11770 PF00563 EAL domain AVL56_11770 PF00990 Diguanylate cyclase, GGDEF domain AVL56_11775 PF12706 Beta-lactamase superfamily domain AVL56_11775 PF17770 Ribonuclease J C-terminal domain AVL56_11775 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AVL56_11780 PF04337 Protein of unknown function, DUF480 AVL56_11795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_11795 PF03466 LysR substrate binding domain AVL56_11815 PF01022 Bacterial regulatory protein, arsR family AVL56_11825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_11825 PF03466 LysR substrate binding domain AVL56_11835 PF02954 Bacterial regulatory protein, Fis family AVL56_11835 PF00072 Response regulator receiver domain AVL56_11835 PF00158 Sigma-54 interaction domain AVL56_11845 PF08446 PAS fold AVL56_11845 PF00360 Phytochrome region AVL56_11845 PF00512 His Kinase A (phospho-acceptor) domain AVL56_11845 PF01590 GAF domain AVL56_11845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_11850 PF00072 Response regulator receiver domain AVL56_11855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_11855 PF09308 LuxQ, periplasmic AVL56_11855 PF00512 His Kinase A (phospho-acceptor) domain AVL56_11855 PF00072 Response regulator receiver domain AVL56_11885 PF07043 Protein of unknown function (DUF1328) AVL56_11905 PF07023 Protein of unknown function (DUF1315) AVL56_11915 PF01235 Sodium:alanine symporter family AVL56_11920 PF00246 Zinc carboxypeptidase AVL56_11920 PF18027 Cytosolic carboxypeptidase N-terminal domain AVL56_11925 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL56_11925 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AVL56_11935 PF01641 SelR domain AVL56_11940 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVL56_11940 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AVL56_11945 PF00128 Alpha amylase, catalytic domain AVL56_11945 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AVL56_11950 PF00128 Alpha amylase, catalytic domain AVL56_11950 PF02806 Alpha amylase, C-terminal all-beta domain AVL56_11950 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AVL56_11955 PF02446 4-alpha-glucanotransferase AVL56_11960 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AVL56_11960 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL56_11965 PF01263 Aldose 1-epimerase AVL56_11970 PF01081 KDPG and KHG aldolase AVL56_11975 PF02685 Glucokinase AVL56_11980 PF00920 Dehydratase family AVL56_11985 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AVL56_11990 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AVL56_11990 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AVL56_11995 PF01418 Helix-turn-helix domain, rpiR family AVL56_11995 PF01380 SIS domain AVL56_12000 PF00224 Pyruvate kinase, barrel domain AVL56_12000 PF02887 Pyruvate kinase, alpha/beta domain AVL56_12005 PF01048 Phosphorylase superfamily AVL56_12050 PF00672 HAMP domain AVL56_12050 PF00512 His Kinase A (phospho-acceptor) domain AVL56_12050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_12055 PF00486 Transcriptional regulatory protein, C terminal AVL56_12055 PF00072 Response regulator receiver domain AVL56_12080 PF09347 Domain of unknown function (DUF1989) AVL56_12095 PF04962 KduI/IolB family AVL56_12100 PF03480 Bacterial extracellular solute-binding protein, family 7 AVL56_12110 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AVL56_12115 PF00356 Bacterial regulatory proteins, lacI family AVL56_12120 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AVL56_12120 PF08666 SAF domain AVL56_12125 PF02614 Glucuronate isomerase AVL56_12130 PF08125 Mannitol dehydrogenase C-terminal domain AVL56_12130 PF01232 Mannitol dehydrogenase Rossmann domain AVL56_12135 PF00294 pfkB family carbohydrate kinase AVL56_12140 PF13472 GDSL-like Lipase/Acylhydrolase family AVL56_12150 PF07470 Glycosyl Hydrolase Family 88 AVL56_12155 PF00295 Glycosyl hydrolases family 28 AVL56_12160 PF01095 Pectinesterase AVL56_12165 PF00512 His Kinase A (phospho-acceptor) domain AVL56_12165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_12165 PF00072 Response regulator receiver domain AVL56_12165 PF09456 RcsC Alpha-Beta-Loop (ABL) AVL56_12180 PF04231 Endonuclease I AVL56_12185 PF11838 ERAP1-like C-terminal domain AVL56_12185 PF01433 Peptidase family M1 domain AVL56_12190 PF00378 Enoyl-CoA hydratase/isomerase AVL56_12210 PF00356 Bacterial regulatory proteins, lacI family AVL56_12215 PF13378 Enolase C-terminal domain-like AVL56_12215 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AVL56_12220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVL56_12220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AVL56_12235 PF00563 EAL domain AVL56_12235 PF00990 Diguanylate cyclase, GGDEF domain AVL56_12235 PF03707 Bacterial signalling protein N terminal repeat AVL56_12250 PF12804 MobA-like NTP transferase domain AVL56_12260 PF01625 Peptide methionine sulfoxide reductase AVL56_12265 PF02566 OsmC-like protein AVL56_12275 PF00080 Copper/zinc superoxide dismutase (SODC) AVL56_12280 PF00990 Diguanylate cyclase, GGDEF domain AVL56_12290 PF00486 Transcriptional regulatory protein, C terminal AVL56_12290 PF00072 Response regulator receiver domain AVL56_12295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_12295 PF00512 His Kinase A (phospho-acceptor) domain AVL56_12295 PF00672 HAMP domain AVL56_12310 PF00881 Nitroreductase family AVL56_12320 PF01979 Amidohydrolase family AVL56_12325 PF01156 Inosine-uridine preferring nucleoside hydrolase AVL56_12330 PF07690 Major Facilitator Superfamily AVL56_12335 PF02112 cAMP phosphodiesterases class-II AVL56_12340 PF01266 FAD dependent oxidoreductase AVL56_12355 PF00672 HAMP domain AVL56_12355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_12365 PF06628 Catalase-related immune-responsive AVL56_12365 PF00199 Catalase AVL56_12375 PF01145 SPFH domain / Band 7 family AVL56_12395 PF00881 Nitroreductase family AVL56_12415 PF00939 Sodium:sulfate symporter transmembrane region AVL56_12420 PF00692 dUTPase AVL56_12425 PF10609 NUBPL iron-transfer P-loop NTPase AVL56_12430 PF08264 Anticodon-binding domain of tRNA AVL56_12430 PF09334 tRNA synthetases class I (M) AVL56_12430 PF01588 Putative tRNA binding domain AVL56_12435 PF08241 Methyltransferase domain AVL56_12440 PF16123 Hydroxyacylglutathione hydrolase C-terminus AVL56_12440 PF00753 Metallo-beta-lactamase superfamily AVL56_12445 PF01476 LysM domain AVL56_12445 PF01464 Transglycosylase SLT domain AVL56_12455 PF00593 TonB dependent receptor AVL56_12455 PF07715 TonB-dependent Receptor Plug Domain AVL56_12460 PF09190 DALR domain AVL56_12460 PF01406 tRNA synthetases class I (C) catalytic domain AVL56_12465 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AVL56_12470 PF00149 Calcineurin-like phosphoesterase AVL56_12480 PF01145 SPFH domain / Band 7 family AVL56_12480 PF15975 Flotillin AVL56_12500 PF01434 Peptidase family M41 AVL56_12500 PF06480 FtsH Extracellular AVL56_12500 PF17862 AAA+ lid domain AVL56_12500 PF00004 ATPase family associated with various cellular activities (AAA) AVL56_12505 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL56_12505 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVL56_12510 PF03450 CO dehydrogenase flavoprotein C-terminal domain AVL56_12510 PF00941 FAD binding domain in molybdopterin dehydrogenase AVL56_12515 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL56_12515 PF01799 [2Fe-2S] binding domain AVL56_12520 PF07940 Heparinase II/III-like protein AVL56_12520 PF05426 Alginate lyase AVL56_12525 PF08240 Alcohol dehydrogenase GroES-like domain AVL56_12525 PF00107 Zinc-binding dehydrogenase AVL56_12535 PF04336 Acyl carrier protein phosphodiesterase AVL56_12540 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AVL56_12550 PF00156 Phosphoribosyl transferase domain AVL56_12555 PF02674 Colicin V production protein AVL56_12560 PF05036 Sporulation related domain AVL56_12565 PF08245 Mur ligase middle domain AVL56_12565 PF02875 Mur ligase family, glutamate ligase domain AVL56_12570 PF01039 Carboxyl transferase domain AVL56_12570 PF17848 Acetyl-coA carboxylase zinc finger domain AVL56_12575 PF01416 tRNA pseudouridine synthase AVL56_12585 PF01118 Semialdehyde dehydrogenase, NAD binding domain AVL56_12585 PF02774 Semialdehyde dehydrogenase, dimerisation domain AVL56_12590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL56_12590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVL56_12590 PF11890 Domain of unknown function (DUF3410) AVL56_12595 PF00596 Class II Aldolase and Adducin N-terminal domain AVL56_12605 PF00109 Beta-ketoacyl synthase, N-terminal domain AVL56_12605 PF02801 Beta-ketoacyl synthase, C-terminal domain AVL56_12610 PF08448 PAS fold AVL56_12610 PF00990 Diguanylate cyclase, GGDEF domain AVL56_12615 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AVL56_12615 PF01266 FAD dependent oxidoreductase AVL56_12645 PF04315 Elongation factor P hydroxylase AVL56_12665 PF00970 Oxidoreductase FAD-binding domain AVL56_12665 PF00042 Globin AVL56_12665 PF00175 Oxidoreductase NAD-binding domain AVL56_12670 PF00487 Fatty acid desaturase AVL56_12690 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL56_12690 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_12695 PF00378 Enoyl-CoA hydratase/isomerase AVL56_12700 PF00440 Bacterial regulatory proteins, tetR family AVL56_12700 PF02909 Tetracyclin repressor-like, C-terminal domain AVL56_12705 PF05199 GMC oxidoreductase AVL56_12705 PF00732 GMC oxidoreductase AVL56_12715 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AVL56_12715 PF06974 Protein of unknown function (DUF1298) AVL56_12720 PF00440 Bacterial regulatory proteins, tetR family AVL56_12725 PF04286 Protein of unknown function (DUF445) AVL56_12755 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AVL56_12755 PF00326 Prolyl oligopeptidase family AVL56_12760 PF07840 FadR C-terminal domain AVL56_12760 PF00392 Bacterial regulatory proteins, gntR family AVL56_12765 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AVL56_12770 PF02600 Disulfide bond formation protein DsbB AVL56_12775 PF13302 Acetyltransferase (GNAT) domain AVL56_12780 PF03692 Putative zinc- or iron-chelating domain AVL56_12785 PF01557 Fumarylacetoacetate (FAA) hydrolase family AVL56_12795 PF05166 YcgL domain AVL56_12800 PF01612 3'-5' exonuclease AVL56_12800 PF00570 HRDC domain AVL56_12805 PF00501 AMP-binding enzyme AVL56_12805 PF13193 AMP-binding enzyme C-terminal domain AVL56_12810 PF12697 Alpha/beta hydrolase family AVL56_12825 PF00814 Glycoprotease family AVL56_12830 PF06733 DEAD_2 AVL56_12830 PF13307 Helicase C-terminal domain AVL56_12835 PF00128 Alpha amylase, catalytic domain AVL56_12890 PF01634 ATP phosphoribosyltransferase AVL56_12890 PF08029 HisG, C-terminal domain AVL56_12895 PF00815 Histidinol dehydrogenase AVL56_12900 PF00155 Aminotransferase class I and II AVL56_12905 PF00475 Imidazoleglycerol-phosphate dehydratase AVL56_12910 PF00117 Glutamine amidotransferase class-I AVL56_12915 PF00977 Histidine biosynthesis protein AVL56_12920 PF00977 Histidine biosynthesis protein AVL56_12925 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AVL56_12925 PF01502 Phosphoribosyl-AMP cyclohydrolase AVL56_12935 PF00106 short chain dehydrogenase AVL56_12945 PF00501 AMP-binding enzyme AVL56_12955 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AVL56_12965 PF00535 Glycosyl transferase family 2 AVL56_12985 PF00512 His Kinase A (phospho-acceptor) domain AVL56_12985 PF08521 Two-component sensor kinase N-terminal AVL56_12985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_12990 PF00072 Response regulator receiver domain AVL56_12990 PF00486 Transcriptional regulatory protein, C terminal AVL56_12995 PF00753 Metallo-beta-lactamase superfamily AVL56_13000 PF10502 Signal peptidase, peptidase S26 AVL56_13005 PF07715 TonB-dependent Receptor Plug Domain AVL56_13005 PF00593 TonB dependent receptor AVL56_13015 PF05191 Adenylate kinase, active site lid AVL56_13020 PF00183 Hsp90 protein AVL56_13020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_13025 PF13662 Toprim domain AVL56_13025 PF02132 RecR protein AVL56_13045 PF02575 YbaB/EbfC DNA-binding family AVL56_13050 PF12170 DNA polymerase III tau subunit V interacting with alpha AVL56_13050 PF12169 DNA polymerase III subunits gamma and tau domain III AVL56_13055 PF00156 Phosphoribosyl transferase domain AVL56_13065 PF05114 Protein of unknown function (DUF692) AVL56_13075 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AVL56_13075 PF00400 WD domain, G-beta repeat AVL56_13085 PF00990 Diguanylate cyclase, GGDEF domain AVL56_13085 PF00360 Phytochrome region AVL56_13085 PF00563 EAL domain AVL56_13085 PF01590 GAF domain AVL56_13120 PF01066 CDP-alcohol phosphatidyltransferase AVL56_13140 PF02861 Clp amino terminal domain, pathogenicity island component AVL56_13140 PF00004 ATPase family associated with various cellular activities (AAA) AVL56_13140 PF17871 AAA lid domain AVL56_13140 PF10431 C-terminal, D2-small domain, of ClpB protein AVL56_13140 PF07724 AAA domain (Cdc48 subfamily) AVL56_13145 PF02578 Multi-copper polyphenol oxidoreductase laccase AVL56_13150 PF01479 S4 domain AVL56_13150 PF00849 RNA pseudouridylate synthase AVL56_13155 PF13525 Outer membrane lipoprotein AVL56_13165 PF04545 Sigma-70, region 4 AVL56_13165 PF04542 Sigma-70 region 2 AVL56_13180 PF00106 short chain dehydrogenase AVL56_13185 PF01593 Flavin containing amine oxidoreductase AVL56_13200 PF00691 OmpA family AVL56_13200 PF13677 Membrane MotB of proton-channel complex MotA/MotB AVL56_13205 PF01618 MotA/TolQ/ExbB proton channel family AVL56_13210 PF02609 Exonuclease VII small subunit AVL56_13215 PF00348 Polyprenyl synthetase AVL56_13220 PF02779 Transketolase, pyrimidine binding domain AVL56_13220 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AVL56_13220 PF02780 Transketolase, C-terminal domain AVL56_13225 PF04608 Phosphatidylglycerophosphatase A AVL56_13230 PF02769 AIR synthase related protein, C-terminal domain AVL56_13230 PF00586 AIR synthase related protein, N-terminal domain AVL56_13235 PF01029 NusB family AVL56_13240 PF00885 6,7-dimethyl-8-ribityllumazine synthase AVL56_13245 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AVL56_13245 PF00925 GTP cyclohydrolase II AVL56_13250 PF00677 Lumazine binding domain AVL56_13255 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AVL56_13255 PF01872 RibD C-terminal domain AVL56_13260 PF03477 ATP cone domain AVL56_13265 PF00464 Serine hydroxymethyltransferase AVL56_13270 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AVL56_13270 PF14602 Hexapeptide repeat of succinyl-transferase AVL56_13270 PF00132 Bacterial transferase hexapeptide (six repeats) AVL56_13275 PF12848 ABC transporter AVL56_13275 PF00005 ABC transporter AVL56_13285 PF18073 Rubredoxin metal binding domain AVL56_13295 PF18429 Domain of unknown function (DUF5609) AVL56_13305 PF01026 TatD related DNase AVL56_13310 PF01243 Pyridoxamine 5'-phosphate oxidase AVL56_13310 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AVL56_13315 PF07650 KH domain AVL56_13315 PF01926 50S ribosome-binding GTPase AVL56_13320 PF00035 Double-stranded RNA binding motif AVL56_13320 PF14622 Ribonuclease-III-like AVL56_13325 PF10502 Signal peptidase, peptidase S26 AVL56_13330 PF00679 Elongation factor G C-terminus AVL56_13330 PF03144 Elongation factor Tu domain 2 AVL56_13330 PF06421 GTP-binding protein LepA C-terminus AVL56_13330 PF00009 Elongation factor Tu GTP binding domain AVL56_13340 PF03888 MucB/RseB N-terminal domain AVL56_13340 PF17188 MucB/RseB C-terminal domain AVL56_13350 PF04542 Sigma-70 region 2 AVL56_13350 PF08281 Sigma-70, region 4 AVL56_13355 PF00890 FAD binding domain AVL56_13355 PF02910 Fumarate reductase flavoprotein C-term AVL56_13370 PF03937 Flavinator of succinate dehydrogenase AVL56_13380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL56_13385 PF00543 Nitrogen regulatory protein P-II AVL56_13390 PF02540 NAD synthase AVL56_13400 PF07963 Prokaryotic N-terminal methylation motif AVL56_13400 PF00114 Pilin (bacterial filament) AVL56_13450 PF02401 LytB protein AVL56_13455 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL56_13460 PF01252 Signal peptidase (SPase) II AVL56_13465 PF00133 tRNA synthetases class I (I, L, M and V) AVL56_13465 PF06827 Zinc finger found in FPG and IleRS AVL56_13465 PF08264 Anticodon-binding domain of tRNA AVL56_13470 PF01687 Riboflavin kinase AVL56_13470 PF06574 FAD synthetase AVL56_13475 PF03023 Lipid II flippase MurJ AVL56_13480 PF01649 Ribosomal protein S20 AVL56_13485 PF00106 short chain dehydrogenase AVL56_13495 PF00106 short chain dehydrogenase AVL56_13500 PF01758 Sodium Bile acid symporter family AVL56_13505 PF03466 LysR substrate binding domain AVL56_13505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_13525 PF07687 Peptidase dimerisation domain AVL56_13525 PF01546 Peptidase family M20/M25/M40 AVL56_13535 PF00216 Bacterial DNA-binding protein AVL56_13540 PF05362 Lon protease (S16) C-terminal proteolytic domain AVL56_13540 PF00004 ATPase family associated with various cellular activities (AAA) AVL56_13540 PF02190 ATP-dependent protease La (LON) substrate-binding domain AVL56_13545 PF06689 ClpX C4-type zinc finger AVL56_13545 PF07724 AAA domain (Cdc48 subfamily) AVL56_13545 PF10431 C-terminal, D2-small domain, of ClpB protein AVL56_13550 PF00574 Clp protease AVL56_13555 PF05698 Bacterial trigger factor protein (TF) C-terminus AVL56_13555 PF05697 Bacterial trigger factor protein (TF) AVL56_13555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL56_13585 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AVL56_13585 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AVL56_13595 PF18389 TrmO C-terminal domain AVL56_13595 PF01980 tRNA-methyltransferase O AVL56_13600 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVL56_13600 PF03129 Anticodon binding domain AVL56_13610 PF02253 Phospholipase A1 AVL56_13615 PF00850 Histone deacetylase domain AVL56_13620 PF02743 Cache domain AVL56_13620 PF00672 HAMP domain AVL56_13620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_13630 PF00117 Glutamine amidotransferase class-I AVL56_13630 PF00958 GMP synthase C terminal domain AVL56_13630 PF02540 NAD synthase AVL56_13635 PF00571 CBS domain AVL56_13635 PF00478 IMP dehydrogenase / GMP reductase domain AVL56_13640 PF02601 Exonuclease VII, large subunit AVL56_13640 PF13742 OB-fold nucleic acid binding domain AVL56_13650 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AVL56_13650 PF01926 50S ribosome-binding GTPase AVL56_13655 PF13360 PQQ-like domain AVL56_13660 PF09976 Tetratricopeptide repeat-like domain AVL56_13665 PF03129 Anticodon binding domain AVL56_13665 PF13393 Histidyl-tRNA synthetase AVL56_13670 PF04551 GcpE protein AVL56_13675 PF13464 Domain of unknown function (DUF4115) AVL56_13685 PF04055 Radical SAM superfamily AVL56_13690 PF00334 Nucleoside diphosphate kinase AVL56_13695 PF02657 Fe-S metabolism associated domain AVL56_13700 PF01883 Iron-sulfur cluster assembly protein AVL56_13705 PF01521 Iron-sulphur cluster biosynthesis AVL56_13710 PF00266 Aminotransferase class-V AVL56_13715 PF01458 Uncharacterized protein family (UPF0051) AVL56_13720 PF00005 ABC transporter AVL56_13725 PF01458 Uncharacterized protein family (UPF0051) AVL56_13730 PF00266 Aminotransferase class-V AVL56_13735 PF02082 Transcriptional regulator AVL56_13740 PF00132 Bacterial transferase hexapeptide (six repeats) AVL56_13745 PF00588 SpoU rRNA Methylase family AVL56_13750 PF00459 Inositol monophosphatase family AVL56_13765 PF00990 Diguanylate cyclase, GGDEF domain AVL56_13765 PF00563 EAL domain AVL56_13765 PF03707 Bacterial signalling protein N terminal repeat AVL56_13780 PF07549 SecD/SecF GG Motif AVL56_13780 PF02355 Protein export membrane protein AVL56_13785 PF13721 SecD export protein N-terminal TM region AVL56_13785 PF02355 Protein export membrane protein AVL56_13785 PF07549 SecD/SecF GG Motif AVL56_13790 PF02699 Preprotein translocase subunit AVL56_13795 PF01702 Queuine tRNA-ribosyltransferase AVL56_13800 PF02547 Queuosine biosynthesis protein AVL56_13810 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) AVL56_13815 PF04012 PspA/IM30 family AVL56_13840 PF03738 Glutathionylspermidine synthase preATP-grasp AVL56_13855 PF04960 Glutaminase AVL56_13860 PF00245 Alkaline phosphatase AVL56_13865 PF00072 Response regulator receiver domain AVL56_13870 PF00463 Isocitrate lyase family AVL56_13875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_13875 PF03466 LysR substrate binding domain AVL56_13880 PF01274 Malate synthase AVL56_13890 PF01370 NAD dependent epimerase/dehydratase family AVL56_13915 PF00899 ThiF family AVL56_13920 PF00132 Bacterial transferase hexapeptide (six repeats) AVL56_13925 PF03170 Bacterial cellulose synthase subunit AVL56_13925 PF03552 Cellulose synthase AVL56_13925 PF00535 Glycosyl transferase family 2 AVL56_13925 PF07238 PilZ domain AVL56_13940 PF00534 Glycosyl transferases group 1 AVL56_13945 PF13439 Glycosyltransferase Family 4 AVL56_13945 PF00534 Glycosyl transferases group 1 AVL56_13990 PF00535 Glycosyl transferase family 2 AVL56_14010 PF02397 Bacterial sugar transferase AVL56_14025 PF13614 AAA domain AVL56_14035 PF13401 AAA domain AVL56_14035 PF01471 Putative peptidoglycan binding domain AVL56_14040 PF01467 Cytidylyltransferase-like AVL56_14040 PF00294 pfkB family carbohydrate kinase AVL56_14045 PF01541 GIY-YIG catalytic domain AVL56_14055 PF03710 Glutamate-ammonia ligase adenylyltransferase AVL56_14055 PF08335 GlnD PII-uridylyltransferase AVL56_14065 PF03279 Bacterial lipid A biosynthesis acyltransferase AVL56_14095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL56_14095 PF02770 Acyl-CoA dehydrogenase, middle domain AVL56_14095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL56_14095 PF09317 Domain of unknown function (DUF1974) AVL56_14105 PF03707 Bacterial signalling protein N terminal repeat AVL56_14105 PF00990 Diguanylate cyclase, GGDEF domain AVL56_14105 PF00563 EAL domain AVL56_14110 PF00265 Thymidine kinase AVL56_14120 PF00356 Bacterial regulatory proteins, lacI family AVL56_14165 PF01926 50S ribosome-binding GTPase AVL56_14170 PF00588 SpoU rRNA Methylase family AVL56_14170 PF08032 RNA 2'-O ribose methyltransferase substrate binding AVL56_14175 PF11953 Domain of unknown function (DUF3470) AVL56_14175 PF00037 4Fe-4S binding domain AVL56_14205 PF03793 PASTA domain AVL56_14205 PF00069 Protein kinase domain AVL56_14215 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AVL56_14215 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AVL56_14215 PF01276 Orn/Lys/Arg decarboxylase, major domain AVL56_14235 PF07715 TonB-dependent Receptor Plug Domain AVL56_14235 PF00593 TonB dependent receptor AVL56_14240 PF03929 PepSY-associated TM region AVL56_14245 PF07715 TonB-dependent Receptor Plug Domain AVL56_14245 PF07660 Secretin and TonB N terminus short domain AVL56_14245 PF00593 TonB dependent receptor AVL56_14255 PF05971 RNA methyltransferase AVL56_14260 PF00376 MerR family regulatory protein AVL56_14260 PF09278 MerR, DNA binding AVL56_14275 PF08443 RimK-like ATP-grasp domain AVL56_14275 PF18030 RimK PreATP-grasp domain AVL56_14285 PF00246 Zinc carboxypeptidase AVL56_14290 PF00483 Nucleotidyl transferase AVL56_14330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL56_14330 PF02770 Acyl-CoA dehydrogenase, middle domain AVL56_14330 PF18158 Adaptive response protein AidB N-terminal domain AVL56_14340 PF01244 Membrane dipeptidase (Peptidase family M19) AVL56_14345 PF07715 TonB-dependent Receptor Plug Domain AVL56_14345 PF00593 TonB dependent receptor AVL56_14345 PF07660 Secretin and TonB N terminus short domain AVL56_14355 PF01738 Dienelactone hydrolase family AVL56_14360 PF00578 AhpC/TSA family AVL56_14370 PF03969 AFG1-like ATPase AVL56_14395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL56_14405 PF00881 Nitroreductase family AVL56_14410 PF12633 Adenylate cyclase NT domain AVL56_14410 PF01295 Adenylate cyclase, class-I AVL56_14420 PF03061 Thioesterase superfamily AVL56_14425 PF12392 Collagenase AVL56_14425 PF01136 Peptidase family U32 AVL56_14460 PF00128 Alpha amylase, catalytic domain AVL56_14465 PF07690 Major Facilitator Superfamily AVL56_14480 PF00266 Aminotransferase class-V AVL56_14490 PF03965 Penicillinase repressor AVL56_14500 PF01258 Prokaryotic dksA/traR C4-type zinc finger AVL56_14505 PF11838 ERAP1-like C-terminal domain AVL56_14505 PF01433 Peptidase family M1 domain AVL56_14550 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AVL56_14550 PF06481 COX Aromatic Rich Motif AVL56_14555 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVL56_14560 PF00510 Cytochrome c oxidase subunit III AVL56_14565 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AVL56_14570 PF01040 UbiA prenyltransferase family AVL56_14585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_14585 PF03466 LysR substrate binding domain AVL56_14595 PF03466 LysR substrate binding domain AVL56_14595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_14600 PF00106 short chain dehydrogenase AVL56_14605 PF01965 DJ-1/PfpI family AVL56_14615 PF00743 Flavin-binding monooxygenase-like AVL56_14620 PF00561 alpha/beta hydrolase fold AVL56_14630 PF00694 Aconitase C-terminal domain AVL56_14635 PF00330 Aconitase family (aconitate hydratase) AVL56_14640 PF00857 Isochorismatase family AVL56_14645 PF02538 Hydantoinase B/oxoprolinase AVL56_14650 PF01968 Hydantoinase/oxoprolinase AVL56_14650 PF05378 Hydantoinase/oxoprolinase N-terminal region AVL56_14655 PF00682 HMGL-like AVL56_14660 PF02515 CoA-transferase family III AVL56_14665 PF07715 TonB-dependent Receptor Plug Domain AVL56_14665 PF00593 TonB dependent receptor AVL56_14670 PF00158 Sigma-54 interaction domain AVL56_14670 PF02954 Bacterial regulatory protein, Fis family AVL56_14670 PF06506 Propionate catabolism activator AVL56_14680 PF07715 TonB-dependent Receptor Plug Domain AVL56_14680 PF00593 TonB dependent receptor AVL56_14700 PF13533 Biotin-lipoyl like AVL56_14705 PF01047 MarR family AVL56_14710 PF17755 UvrA DNA-binding domain AVL56_14715 PF03631 Virulence factor BrkB AVL56_14720 PF00270 DEAD/DEAH box helicase AVL56_14720 PF00271 Helicase conserved C-terminal domain AVL56_14720 PF16124 RecQ zinc-binding AVL56_14720 PF00570 HRDC domain AVL56_14720 PF09382 RQC domain AVL56_14725 PF07152 YaeQ protein AVL56_14745 PF03466 LysR substrate binding domain AVL56_14745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_14755 PF01556 DnaJ C terminal domain AVL56_14755 PF00226 DnaJ domain AVL56_14780 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AVL56_14780 PF00400 WD domain, G-beta repeat AVL56_14795 PF00392 Bacterial regulatory proteins, gntR family AVL56_14795 PF00155 Aminotransferase class I and II AVL56_14815 PF01863 Protein of unknown function DUF45 AVL56_14830 PF02810 SEC-C motif AVL56_14830 PF07517 SecA DEAD-like domain AVL56_14830 PF07516 SecA Wing and Scaffold domain AVL56_14830 PF01043 SecA preprotein cross-linking domain AVL56_14845 PF03553 Na+/H+ antiporter family AVL56_14865 PF07995 Glucose / Sorbosone dehydrogenase AVL56_14870 PF12833 Helix-turn-helix domain AVL56_14870 PF12852 Cupin AVL56_14875 PF00892 EamA-like transporter family AVL56_14880 PF06906 Protein of unknown function (DUF1272) AVL56_14885 PF00270 DEAD/DEAH box helicase AVL56_14885 PF00271 Helicase conserved C-terminal domain AVL56_14935 PF07690 Major Facilitator Superfamily AVL56_14945 PF00248 Aldo/keto reductase family AVL56_14960 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AVL56_14960 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVL56_14985 PF02347 Glycine cleavage system P-protein AVL56_14990 PF01597 Glycine cleavage H-protein AVL56_14995 PF01571 Aminomethyltransferase folate-binding domain AVL56_14995 PF08669 Glycine cleavage T-protein C-terminal barrel domain AVL56_15000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_15000 PF03466 LysR substrate binding domain AVL56_15005 PF00356 Bacterial regulatory proteins, lacI family AVL56_15005 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AVL56_15010 PF01306 LacY proton/sugar symporter AVL56_15015 PF08244 Glycosyl hydrolases family 32 C terminal AVL56_15015 PF00251 Glycosyl hydrolases family 32 N-terminal domain AVL56_15020 PF00083 Sugar (and other) transporter AVL56_15030 PF07715 TonB-dependent Receptor Plug Domain AVL56_15030 PF00593 TonB dependent receptor AVL56_15035 PF03150 Di-haem cytochrome c peroxidase AVL56_15040 PF00557 Metallopeptidase family M24 AVL56_15040 PF01321 Creatinase/Prolidase N-terminal domain AVL56_15055 PF01494 FAD binding domain AVL56_15060 PF01494 FAD binding domain AVL56_15065 PF05195 Aminopeptidase P, N-terminal domain AVL56_15065 PF00557 Metallopeptidase family M24 AVL56_15070 PF03695 Uncharacterised protein family (UPF0149) AVL56_15080 PF00294 pfkB family carbohydrate kinase AVL56_15085 PF01156 Inosine-uridine preferring nucleoside hydrolase AVL56_15090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_15090 PF00512 His Kinase A (phospho-acceptor) domain AVL56_15090 PF00989 PAS fold AVL56_15090 PF13188 PAS domain AVL56_15095 PF01812 5-formyltetrahydrofolate cyclo-ligase family AVL56_15100 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AVL56_15105 PF01842 ACT domain AVL56_15105 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVL56_15105 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL56_15125 PF06945 Protein of unknown function (DUF1289) AVL56_15145 PF00873 AcrB/AcrD/AcrF family AVL56_15150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL56_15155 PF03466 LysR substrate binding domain AVL56_15155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_15165 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_15165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVL56_15170 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AVL56_15170 PF00364 Biotin-requiring enzyme AVL56_15170 PF02817 e3 binding domain AVL56_15175 PF17831 Pyruvate dehydrogenase E1 component middle domain AVL56_15175 PF00456 Transketolase, thiamine diphosphate binding domain AVL56_15180 PF00392 Bacterial regulatory proteins, gntR family AVL56_15180 PF07729 FCD domain AVL56_15190 PF01510 N-acetylmuramoyl-L-alanine amidase AVL56_15200 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AVL56_15200 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AVL56_15210 PF00482 Type II secretion system (T2SS), protein F AVL56_15215 PF01478 Type IV leader peptidase family AVL56_15215 PF06750 Bacterial Peptidase A24 N-terminal domain AVL56_15220 PF01121 Dephospho-CoA kinase AVL56_15225 PF07072 Cell division protein AVL56_15230 PF03884 DNA gyrase inhibitor YacG AVL56_15235 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AVL56_15240 PF00293 NUDIX domain AVL56_15245 PF07516 SecA Wing and Scaffold domain AVL56_15245 PF01043 SecA preprotein cross-linking domain AVL56_15245 PF02810 SEC-C motif AVL56_15245 PF07517 SecA DEAD-like domain AVL56_15250 PF08525 Opacity-associated protein A N-terminal motif AVL56_15250 PF01476 LysM domain AVL56_15250 PF01551 Peptidase family M23 AVL56_15255 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AVL56_15260 PF12327 FtsZ family, C-terminal domain AVL56_15260 PF00091 Tubulin/FtsZ family, GTPase domain AVL56_15265 PF02491 SHS2 domain inserted in FTSA AVL56_15270 PF08478 POTRA domain, FtsQ-type AVL56_15270 PF03799 Cell division protein FtsQ AVL56_15275 PF01820 D-ala D-ala ligase N-terminus AVL56_15275 PF07478 D-ala D-ala ligase C-terminus AVL56_15280 PF01225 Mur ligase family, catalytic domain AVL56_15280 PF02875 Mur ligase family, glutamate ligase domain AVL56_15280 PF08245 Mur ligase middle domain AVL56_15285 PF04101 Glycosyltransferase family 28 C-terminal domain AVL56_15285 PF03033 Glycosyltransferase family 28 N-terminal domain AVL56_15290 PF01098 Cell cycle protein AVL56_15295 PF02875 Mur ligase family, glutamate ligase domain AVL56_15295 PF08245 Mur ligase middle domain AVL56_15300 PF00953 Glycosyl transferase family 4 AVL56_15300 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AVL56_15305 PF02875 Mur ligase family, glutamate ligase domain AVL56_15305 PF01225 Mur ligase family, catalytic domain AVL56_15305 PF08245 Mur ligase middle domain AVL56_15310 PF01225 Mur ligase family, catalytic domain AVL56_15310 PF02875 Mur ligase family, glutamate ligase domain AVL56_15310 PF08245 Mur ligase middle domain AVL56_15315 PF03717 Penicillin-binding Protein dimerisation domain AVL56_15315 PF00905 Penicillin binding protein transpeptidase domain AVL56_15320 PF04999 Cell division protein FtsL AVL56_15325 PF01795 MraW methylase family AVL56_15330 PF02381 MraZ protein, putative antitoxin-like AVL56_15340 PF01244 Membrane dipeptidase (Peptidase family M19) AVL56_15345 PF00873 AcrB/AcrD/AcrF family AVL56_15350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL56_15370 PF00462 Glutaredoxin AVL56_15370 PF08534 Redoxin AVL56_15375 PF00990 Diguanylate cyclase, GGDEF domain AVL56_15390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_15390 PF00512 His Kinase A (phospho-acceptor) domain AVL56_15390 PF18415 Histidine kinase receptor ArcB trans-membrane domain AVL56_15390 PF00989 PAS fold AVL56_15390 PF00072 Response regulator receiver domain AVL56_15390 PF01627 Hpt domain AVL56_15395 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AVL56_15395 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AVL56_15410 PF05552 Conserved TM helix AVL56_15410 PF00924 Mechanosensitive ion channel AVL56_15415 PF04452 RNA methyltransferase AVL56_15420 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AVL56_15420 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AVL56_15425 PF02622 Uncharacterized ACR, COG1678 AVL56_15430 PF03652 Holliday junction resolvase AVL56_15440 PF00437 Type II/IV secretion system protein AVL56_15445 PF00437 Type II/IV secretion system protein AVL56_15450 PF01168 Alanine racemase, N-terminal domain AVL56_15455 PF03807 NADP oxidoreductase coenzyme F420-dependent AVL56_15455 PF14748 Pyrroline-5-carboxylate reductase dimerisation AVL56_15460 PF02325 YGGT family AVL56_15475 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL56_15475 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_15485 PF08787 Alginate lyase AVL56_15490 PF01588 Putative tRNA binding domain AVL56_15495 PF00043 Glutathione S-transferase, C-terminal domain AVL56_15495 PF02798 Glutathione S-transferase, N-terminal domain AVL56_15500 PF03883 Peroxide stress protein YaaA AVL56_15505 PF00923 Transaldolase/Fructose-6-phosphate aldolase AVL56_15510 PF00342 Phosphoglucose isomerase AVL56_15515 PF03167 Uracil DNA glycosylase superfamily AVL56_15520 PF00291 Pyridoxal-phosphate dependent enzyme AVL56_15520 PF14821 Threonine synthase N terminus AVL56_15525 PF08544 GHMP kinases C terminal AVL56_15525 PF00288 GHMP kinases N terminal domain AVL56_15530 PF03447 Homoserine dehydrogenase, NAD binding domain AVL56_15530 PF00742 Homoserine dehydrogenase AVL56_15530 PF00696 Amino acid kinase family AVL56_15530 PF01842 ACT domain AVL56_15530 PF13840 ACT domain AVL56_15535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_15535 PF03466 LysR substrate binding domain AVL56_15540 PF08240 Alcohol dehydrogenase GroES-like domain AVL56_15540 PF00107 Zinc-binding dehydrogenase AVL56_15545 PF00072 Response regulator receiver domain AVL56_15545 PF00196 Bacterial regulatory proteins, luxR family AVL56_15550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_15550 PF07730 Histidine kinase AVL56_15570 PF01022 Bacterial regulatory protein, arsR family AVL56_15580 PF03358 NADPH-dependent FMN reductase AVL56_15585 PF01758 Sodium Bile acid symporter family AVL56_15590 PF00072 Response regulator receiver domain AVL56_15595 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AVL56_15600 PF00072 Response regulator receiver domain AVL56_15600 PF00486 Transcriptional regulatory protein, C terminal AVL56_15605 PF00989 PAS fold AVL56_15605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_15605 PF00512 His Kinase A (phospho-acceptor) domain AVL56_15605 PF16736 Single Cache-like AVL56_15630 PF16653 Saccharopine dehydrogenase C-terminal domain AVL56_15630 PF03435 Saccharopine dehydrogenase NADP binding domain AVL56_15635 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AVL56_15645 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVL56_15650 PF04348 LppC putative lipoprotein AVL56_15655 PF02021 Uncharacterised protein family UPF0102 AVL56_15660 PF13580 SIS domain AVL56_15665 PF04972 BON domain AVL56_15670 PF07690 Major Facilitator Superfamily AVL56_15685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_15685 PF03466 LysR substrate binding domain AVL56_15695 PF00893 Small Multidrug Resistance protein AVL56_15700 PF07730 Histidine kinase AVL56_15705 PF00072 Response regulator receiver domain AVL56_15705 PF00196 Bacterial regulatory proteins, luxR family AVL56_15710 PF07715 TonB-dependent Receptor Plug Domain AVL56_15710 PF00593 TonB dependent receptor AVL56_15725 PF00285 Citrate synthase, C-terminal domain AVL56_15730 PF00330 Aconitase family (aconitate hydratase) AVL56_15730 PF00694 Aconitase C-terminal domain AVL56_15735 PF04303 PrpF protein AVL56_15740 PF00990 Diguanylate cyclase, GGDEF domain AVL56_15750 PF05161 MOFRL family AVL56_15750 PF13660 Domain of unknown function (DUF4147) AVL56_15755 PF00474 Sodium:solute symporter family AVL56_15760 PF00593 TonB dependent receptor AVL56_15760 PF07715 TonB-dependent Receptor Plug Domain AVL56_15785 PF00512 His Kinase A (phospho-acceptor) domain AVL56_15785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_15785 PF00989 PAS fold AVL56_15785 PF00072 Response regulator receiver domain AVL56_15785 PF18415 Histidine kinase receptor ArcB trans-membrane domain AVL56_15785 PF01627 Hpt domain AVL56_15790 PF00310 Glutamine amidotransferases class-II AVL56_15790 PF04898 Glutamate synthase central domain AVL56_15790 PF01645 Conserved region in glutamate synthase AVL56_15790 PF01493 GXGXG motif AVL56_15795 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_15795 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AVL56_15805 PF01381 Helix-turn-helix AVL56_15820 PF01048 Phosphorylase superfamily AVL56_15835 PF00581 Rhodanese-like domain AVL56_15850 PF00579 tRNA synthetases class I (W and Y) AVL56_15855 PF01551 Peptidase family M23 AVL56_15855 PF04225 Opacity-associated protein A LysM-like domain AVL56_15860 PF03702 Anhydro-N-acetylmuramic acid kinase AVL56_15870 PF07690 Major Facilitator Superfamily AVL56_15880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL56_15890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL56_15895 PF00043 Glutathione S-transferase, C-terminal domain AVL56_15895 PF13417 Glutathione S-transferase, N-terminal domain AVL56_15900 PF01521 Iron-sulphur cluster biosynthesis AVL56_15905 PF03976 Polyphosphate kinase 2 (PPK2) AVL56_15910 PF03776 Septum formation topological specificity factor MinE AVL56_15915 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AVL56_15920 PF03775 Septum formation inhibitor MinC, C-terminal domain AVL56_15920 PF05209 Septum formation inhibitor MinC, N-terminal domain AVL56_15925 PF00206 Lyase AVL56_15925 PF10415 Fumarase C C-terminus AVL56_15945 PF03653 Uncharacterised protein family (UPF0093) AVL56_15960 PF01566 Natural resistance-associated macrophage protein AVL56_15965 PF00155 Aminotransferase class I and II AVL56_15970 PF00512 His Kinase A (phospho-acceptor) domain AVL56_15970 PF08448 PAS fold AVL56_15970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_15970 PF00072 Response regulator receiver domain AVL56_15970 PF13188 PAS domain AVL56_15980 PF00009 Elongation factor Tu GTP binding domain AVL56_15980 PF00679 Elongation factor G C-terminus AVL56_15980 PF03144 Elongation factor Tu domain 2 AVL56_15985 PF00120 Glutamine synthetase, catalytic domain AVL56_15985 PF03951 Glutamine synthetase, beta-Grasp domain AVL56_15995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_15995 PF00512 His Kinase A (phospho-acceptor) domain AVL56_15995 PF00989 PAS fold AVL56_16000 PF02954 Bacterial regulatory protein, Fis family AVL56_16000 PF00158 Sigma-54 interaction domain AVL56_16000 PF00072 Response regulator receiver domain AVL56_16005 PF00072 Response regulator receiver domain AVL56_16010 PF01553 Acyltransferase AVL56_16015 PF06877 Regulator of ribonuclease activity B AVL56_16025 PF17158 Membrane-associated sensor, integral membrane domain AVL56_16025 PF00990 Diguanylate cyclase, GGDEF domain AVL56_16035 PF00672 HAMP domain AVL56_16035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_16035 PF00512 His Kinase A (phospho-acceptor) domain AVL56_16035 PF01627 Hpt domain AVL56_16035 PF00072 Response regulator receiver domain AVL56_16035 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVL56_16040 PF08264 Anticodon-binding domain of tRNA AVL56_16040 PF00133 tRNA synthetases class I (I, L, M and V) AVL56_16040 PF10458 Valyl tRNA synthetase tRNA binding arm AVL56_16045 PF04364 DNA polymerase III chi subunit, HolC AVL56_16050 PF00883 Cytosol aminopeptidase family, catalytic domain AVL56_16050 PF02789 Cytosol aminopeptidase family, N-terminal domain AVL56_16055 PF03739 Lipopolysaccharide export system permease LptF/LptG AVL56_16060 PF03739 Lipopolysaccharide export system permease LptF/LptG AVL56_16070 PF04542 Sigma-70 region 2 AVL56_16070 PF04545 Sigma-70, region 4 AVL56_16105 PF06276 Ferric iron reductase FhuF-like transporter AVL56_16105 PF04183 IucA / IucC family AVL56_16110 PF06276 Ferric iron reductase FhuF-like transporter AVL56_16110 PF04183 IucA / IucC family AVL56_16115 PF13193 AMP-binding enzyme C-terminal domain AVL56_16115 PF00501 AMP-binding enzyme AVL56_16125 PF01261 Xylose isomerase-like TIM barrel AVL56_16140 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVL56_16140 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AVL56_16160 PF03707 Bacterial signalling protein N terminal repeat AVL56_16160 PF00563 EAL domain AVL56_16160 PF00990 Diguanylate cyclase, GGDEF domain AVL56_16165 PF05221 S-adenosyl-L-homocysteine hydrolase AVL56_16165 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AVL56_16180 PF01042 Endoribonuclease L-PSP AVL56_16220 PF01321 Creatinase/Prolidase N-terminal domain AVL56_16220 PF00557 Metallopeptidase family M24 AVL56_16225 PF13188 PAS domain AVL56_16225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_16225 PF00512 His Kinase A (phospho-acceptor) domain AVL56_16225 PF08448 PAS fold AVL56_16225 PF00072 Response regulator receiver domain AVL56_16235 PF13419 Haloacid dehalogenase-like hydrolase AVL56_16240 PF00005 ABC transporter AVL56_16240 PF08402 TOBE domain AVL56_16245 PF00528 Binding-protein-dependent transport system inner membrane component AVL56_16250 PF00528 Binding-protein-dependent transport system inner membrane component AVL56_16265 PF05230 MASE2 domain AVL56_16265 PF00990 Diguanylate cyclase, GGDEF domain AVL56_16270 PF00990 Diguanylate cyclase, GGDEF domain AVL56_16275 PF00561 alpha/beta hydrolase fold AVL56_16280 PF07729 FCD domain AVL56_16280 PF00392 Bacterial regulatory proteins, gntR family AVL56_16285 PF08787 Alginate lyase AVL56_16300 PF07715 TonB-dependent Receptor Plug Domain AVL56_16305 PF03150 Di-haem cytochrome c peroxidase AVL56_16320 PF08787 Alginate lyase AVL56_16325 PF07690 Major Facilitator Superfamily AVL56_16330 PF14592 Chondroitinase B AVL56_16340 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVL56_16340 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AVL56_16345 PF07883 Cupin domain AVL56_16350 PF07690 Major Facilitator Superfamily AVL56_16370 PF00498 FHA domain AVL56_16370 PF12773 Double zinc ribbon AVL56_16405 PF00069 Protein kinase domain AVL56_16405 PF00805 Pentapeptide repeats (8 copies) AVL56_16410 PF01447 Thermolysin metallopeptidase, catalytic domain AVL56_16410 PF02868 Thermolysin metallopeptidase, alpha-helical domain AVL56_16410 PF07504 Fungalysin/Thermolysin Propeptide Motif AVL56_16410 PF03413 Peptidase propeptide and YPEB domain AVL56_16415 PF01447 Thermolysin metallopeptidase, catalytic domain AVL56_16415 PF02868 Thermolysin metallopeptidase, alpha-helical domain AVL56_16415 PF16485 Protealysin propeptide AVL56_16420 PF01061 ABC-2 type transporter AVL56_16420 PF00005 ABC transporter AVL56_16420 PF00498 FHA domain AVL56_16425 PF00270 DEAD/DEAH box helicase AVL56_16425 PF00271 Helicase conserved C-terminal domain AVL56_16430 PF01081 KDPG and KHG aldolase AVL56_16435 PF00294 pfkB family carbohydrate kinase AVL56_16440 PF00392 Bacterial regulatory proteins, gntR family AVL56_16440 PF07729 FCD domain AVL56_16450 PF12794 Mechanosensitive ion channel inner membrane domain 1 AVL56_16450 PF12795 Mechanosensitive ion channel porin domain AVL56_16450 PF00924 Mechanosensitive ion channel AVL56_16460 PF00141 Peroxidase AVL56_16470 PF02254 TrkA-N domain AVL56_16470 PF00999 Sodium/hydrogen exchanger family AVL56_16485 PF03372 Endonuclease/Exonuclease/phosphatase family AVL56_16490 PF03466 LysR substrate binding domain AVL56_16490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_16500 PF01925 Sulfite exporter TauE/SafE AVL56_16505 PF00155 Aminotransferase class I and II AVL56_16510 PF08769 Sporulation initiation factor Spo0A C terminal AVL56_16510 PF00072 Response regulator receiver domain AVL56_16520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_16520 PF00512 His Kinase A (phospho-acceptor) domain AVL56_16530 PF00136 DNA polymerase family B AVL56_16530 PF03104 DNA polymerase family B, exonuclease domain AVL56_16575 PF05958 tRNA (Uracil-5-)-methyltransferase AVL56_16580 PF00440 Bacterial regulatory proteins, tetR family AVL56_16595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVL56_16595 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_16605 PF03167 Uracil DNA glycosylase superfamily AVL56_16610 PF00563 EAL domain AVL56_16610 PF00990 Diguanylate cyclase, GGDEF domain AVL56_16610 PF03707 Bacterial signalling protein N terminal repeat AVL56_16620 PF01507 Phosphoadenosine phosphosulfate reductase family AVL56_16625 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AVL56_16625 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AVL56_16630 PF00258 Flavodoxin AVL56_16630 PF00175 Oxidoreductase NAD-binding domain AVL56_16630 PF00667 FAD binding domain AVL56_16635 PF00593 TonB dependent receptor AVL56_16635 PF07715 TonB-dependent Receptor Plug Domain AVL56_16660 PF04012 PspA/IM30 family AVL56_16670 PF01207 Dihydrouridine synthase (Dus) AVL56_16690 PF00990 Diguanylate cyclase, GGDEF domain AVL56_16690 PF03707 Bacterial signalling protein N terminal repeat AVL56_16690 PF00563 EAL domain AVL56_16695 PF00756 Putative esterase AVL56_16700 PF01553 Acyltransferase AVL56_16705 PF01553 Acyltransferase AVL56_16710 PF00924 Mechanosensitive ion channel AVL56_16725 PF01370 NAD dependent epimerase/dehydratase family AVL56_16730 PF00209 Sodium:neurotransmitter symporter family AVL56_16745 PF01625 Peptide methionine sulfoxide reductase AVL56_16760 PF00258 Flavodoxin AVL56_16770 PF02472 Biopolymer transport protein ExbD/TolR AVL56_16780 PF13181 Tetratricopeptide repeat AVL56_16780 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AVL56_16785 PF01270 Glycosyl hydrolases family 8 AVL56_16795 PF03170 Bacterial cellulose synthase subunit AVL56_16795 PF00535 Glycosyl transferase family 2 AVL56_16795 PF07238 PilZ domain AVL56_16810 PF05175 Methyltransferase small domain AVL56_16815 PF13460 NAD(P)H-binding AVL56_16820 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AVL56_16820 PF00326 Prolyl oligopeptidase family AVL56_16825 PF08000 Bacterial PH domain AVL56_16830 PF08448 PAS fold AVL56_16830 PF00563 EAL domain AVL56_16830 PF00990 Diguanylate cyclase, GGDEF domain AVL56_16835 PF00291 Pyridoxal-phosphate dependent enzyme AVL56_16840 PF07969 Amidohydrolase family AVL56_16845 PF00753 Metallo-beta-lactamase superfamily AVL56_16855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_16855 PF03466 LysR substrate binding domain AVL56_16860 PF13230 Glutamine amidotransferases class-II AVL56_16875 PF01037 Lrp/AsnC ligand binding domain AVL56_16890 PF00753 Metallo-beta-lactamase superfamily AVL56_16890 PF16123 Hydroxyacylglutathione hydrolase C-terminus AVL56_16900 PF11798 IMS family HHH motif AVL56_16900 PF00817 impB/mucB/samB family AVL56_16900 PF11799 impB/mucB/samB family C-terminal domain AVL56_16910 PF02424 ApbE family AVL56_16915 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL56_16915 PF00175 Oxidoreductase NAD-binding domain AVL56_16915 PF00970 Oxidoreductase FAD-binding domain AVL56_16920 PF02508 Rnf-Nqr subunit, membrane protein AVL56_16925 PF02508 Rnf-Nqr subunit, membrane protein AVL56_16930 PF04205 FMN-binding domain AVL56_16935 PF03116 NQR2, RnfD, RnfE family AVL56_16940 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AVL56_16940 PF11973 NQRA C-terminal domain AVL56_16945 PF07055 Enoyl reductase FAD binding domain AVL56_16945 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AVL56_16945 PF12241 Trans-2-enoyl-CoA reductase catalytic region AVL56_16950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL56_16950 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AVL56_16955 PF00311 Phosphoenolpyruvate carboxylase AVL56_16960 PF00141 Peroxidase AVL56_16965 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AVL56_16965 PF00056 lactate/malate dehydrogenase, NAD binding domain AVL56_16970 PF02863 Arginine repressor, C-terminal domain AVL56_16970 PF01316 Arginine repressor, DNA binding domain AVL56_16975 PF00593 TonB dependent receptor AVL56_16975 PF07715 TonB-dependent Receptor Plug Domain AVL56_16985 PF00593 TonB dependent receptor AVL56_17000 PF00485 Phosphoribulokinase / Uridine kinase family AVL56_17005 PF07670 Nucleoside recognition AVL56_17005 PF07662 Na+ dependent nucleoside transporter C-terminus AVL56_17005 PF01773 Na+ dependent nucleoside transporter N-terminus AVL56_17020 PF02469 Fasciclin domain AVL56_17030 PF00990 Diguanylate cyclase, GGDEF domain AVL56_17030 PF00072 Response regulator receiver domain AVL56_17040 PF00571 CBS domain AVL56_17040 PF01380 SIS domain AVL56_17045 PF00474 Sodium:solute symporter family AVL56_17055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_17055 PF00512 His Kinase A (phospho-acceptor) domain AVL56_17055 PF18415 Histidine kinase receptor ArcB trans-membrane domain AVL56_17065 PF08443 RimK-like ATP-grasp domain AVL56_17065 PF18030 RimK PreATP-grasp domain AVL56_17075 PF08443 RimK-like ATP-grasp domain AVL56_17075 PF18030 RimK PreATP-grasp domain AVL56_17085 PF00072 Response regulator receiver domain AVL56_17085 PF00196 Bacterial regulatory proteins, luxR family AVL56_17090 PF16177 Acetyl-coenzyme A synthetase N-terminus AVL56_17090 PF00501 AMP-binding enzyme AVL56_17090 PF13193 AMP-binding enzyme C-terminal domain AVL56_17100 PF00128 Alpha amylase, catalytic domain AVL56_17100 PF02806 Alpha amylase, C-terminal all-beta domain AVL56_17105 PF02690 Na+/Pi-cotransporter AVL56_17110 PF00248 Aldo/keto reductase family AVL56_17125 PF00199 Catalase AVL56_17125 PF06628 Catalase-related immune-responsive AVL56_17135 PF00009 Elongation factor Tu GTP binding domain AVL56_17135 PF03144 Elongation factor Tu domain 2 AVL56_17135 PF03143 Elongation factor Tu C-terminal domain AVL56_17160 PF03309 Type III pantothenate kinase AVL56_17165 PF02237 Biotin protein ligase C terminal domain AVL56_17165 PF08279 HTH domain AVL56_17165 PF03099 Biotin/lipoate A/B protein ligase family AVL56_17170 PF01565 FAD binding domain AVL56_17170 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AVL56_17220 PF00664 ABC transporter transmembrane region AVL56_17220 PF00005 ABC transporter AVL56_17220 PF03412 Peptidase C39 family AVL56_17225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_17225 PF03466 LysR substrate binding domain AVL56_17235 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AVL56_17235 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AVL56_17235 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AVL56_17240 PF16363 GDP-mannose 4,6 dehydratase AVL56_17245 PF04321 RmlD substrate binding domain AVL56_17250 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AVL56_17255 PF00483 Nucleotidyl transferase AVL56_17260 PF00535 Glycosyl transferase family 2 AVL56_17260 PF00534 Glycosyl transferases group 1 AVL56_17280 PF00132 Bacterial transferase hexapeptide (six repeats) AVL56_17280 PF00483 Nucleotidyl transferase AVL56_17295 PF00535 Glycosyl transferase family 2 AVL56_17320 PF07836 DmpG-like communication domain AVL56_17320 PF00682 HMGL-like AVL56_17325 PF02348 Cytidylyltransferase AVL56_17340 PF00884 Sulfatase AVL56_17340 PF16385 Domain of unknown function AVL56_17355 PF00535 Glycosyl transferase family 2 AVL56_17360 PF00483 Nucleotidyl transferase AVL56_17360 PF01050 Mannose-6-phosphate isomerase AVL56_17365 PF01196 Ribosomal protein L17 AVL56_17370 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AVL56_17370 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AVL56_17370 PF01000 RNA polymerase Rpb3/RpoA insert domain AVL56_17375 PF00163 Ribosomal protein S4/S9 N-terminal domain AVL56_17375 PF01479 S4 domain AVL56_17380 PF00411 Ribosomal protein S11 AVL56_17385 PF00416 Ribosomal protein S13/S18 AVL56_17390 PF00344 SecY translocase AVL56_17395 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AVL56_17400 PF00327 Ribosomal protein L30p/L7e AVL56_17405 PF00333 Ribosomal protein S5, N-terminal domain AVL56_17405 PF03719 Ribosomal protein S5, C-terminal domain AVL56_17410 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AVL56_17415 PF00347 Ribosomal protein L6 AVL56_17420 PF00410 Ribosomal protein S8 AVL56_17425 PF00253 Ribosomal protein S14p/S29e AVL56_17430 PF00281 Ribosomal protein L5 AVL56_17430 PF00673 ribosomal L5P family C-terminus AVL56_17435 PF00467 KOW motif AVL56_17435 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AVL56_17440 PF00238 Ribosomal protein L14p/L23e AVL56_17445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_17445 PF00512 His Kinase A (phospho-acceptor) domain AVL56_17445 PF09308 LuxQ, periplasmic AVL56_17445 PF00072 Response regulator receiver domain AVL56_17455 PF00082 Subtilase family AVL56_17455 PF05922 Peptidase inhibitor I9 AVL56_17460 PF08032 RNA 2'-O ribose methyltransferase substrate binding AVL56_17460 PF00588 SpoU rRNA Methylase family AVL56_17465 PF00575 S1 RNA binding domain AVL56_17465 PF00773 RNB domain AVL56_17465 PF17876 Cold shock domain AVL56_17465 PF08461 Ribonuclease R winged-helix domain AVL56_17465 PF08206 Ribonuclease B OB domain AVL56_17470 PF09423 PhoD-like phosphatase AVL56_17470 PF16655 PhoD-like phosphatase, N-terminal domain AVL56_17480 PF08238 Sel1 repeat AVL56_17490 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AVL56_17495 PF00970 Oxidoreductase FAD-binding domain AVL56_17495 PF00175 Oxidoreductase NAD-binding domain AVL56_17500 PF04389 Peptidase family M28 AVL56_17520 PF01654 Cytochrome bd terminal oxidase subunit I AVL56_17525 PF02322 Cytochrome bd terminal oxidase subunit II AVL56_17530 PF12729 Four helix bundle sensory module for signal transduction AVL56_17530 PF00672 HAMP domain AVL56_17530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_17535 PF13404 AsnC-type helix-turn-helix domain AVL56_17535 PF01037 Lrp/AsnC ligand binding domain AVL56_17540 PF00291 Pyridoxal-phosphate dependent enzyme AVL56_17550 PF00313 'Cold-shock' DNA-binding domain AVL56_17555 PF03109 ABC1 family AVL56_17565 PF01209 ubiE/COQ5 methyltransferase family AVL56_17575 PF01432 Peptidase family M3 AVL56_17580 PF00072 Response regulator receiver domain AVL56_17590 PF00512 His Kinase A (phospho-acceptor) domain AVL56_17590 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL56_17590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_17595 PF00158 Sigma-54 interaction domain AVL56_17595 PF02954 Bacterial regulatory protein, Fis family AVL56_17595 PF00072 Response regulator receiver domain AVL56_17600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVL56_17600 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_17605 PF10518 TAT (twin-arginine translocation) pathway signal sequence AVL56_17605 PF00384 Molybdopterin oxidoreductase AVL56_17605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AVL56_17605 PF01568 Molydopterin dinucleotide binding domain AVL56_17610 PF14684 Tricorn protease C1 domain AVL56_17610 PF14685 Tricorn protease PDZ domain AVL56_17610 PF03572 Peptidase family S41 AVL56_17610 PF07676 WD40-like Beta Propeller Repeat AVL56_17625 PF03412 Peptidase C39 family AVL56_17625 PF00005 ABC transporter AVL56_17625 PF00664 ABC transporter transmembrane region AVL56_17630 PF00072 Response regulator receiver domain AVL56_17630 PF00196 Bacterial regulatory proteins, luxR family AVL56_17645 PF07724 AAA domain (Cdc48 subfamily) AVL56_17645 PF00004 ATPase family associated with various cellular activities (AAA) AVL56_17650 PF00227 Proteasome subunit AVL56_17655 PF05036 Sporulation related domain AVL56_17660 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AVL56_17660 PF18074 Primosomal protein N C-terminal domain AVL56_17660 PF17764 3′ DNA-binding domain (3′BD) AVL56_17660 PF00270 DEAD/DEAH box helicase AVL56_17660 PF00271 Helicase conserved C-terminal domain AVL56_17665 PF01197 Ribosomal protein L31 AVL56_17675 PF00390 Malic enzyme, N-terminal domain AVL56_17675 PF03949 Malic enzyme, NAD binding domain AVL56_17680 PF01340 Met Apo-repressor, MetJ AVL56_17685 PF02219 Methylenetetrahydrofolate reductase AVL56_17690 PF03631 Virulence factor BrkB AVL56_17705 PF00561 alpha/beta hydrolase fold AVL56_17710 PF02580 D-Tyr-tRNA(Tyr) deacylase AVL56_17715 PF09500 Putative thioesterase (yiiD_Cterm) AVL56_17715 PF00583 Acetyltransferase (GNAT) family AVL56_17720 PF04542 Sigma-70 region 2 AVL56_17720 PF00140 Sigma-70 factor, region 1.2 AVL56_17720 PF04545 Sigma-70, region 4 AVL56_17725 PF00563 EAL domain AVL56_17725 PF08668 HDOD domain AVL56_17730 PF00563 EAL domain AVL56_17730 PF08668 HDOD domain AVL56_17735 PF18075 FtsX extracellular domain AVL56_17740 PF00005 ABC transporter AVL56_17745 PF00448 SRP54-type protein, GTPase domain AVL56_17745 PF02881 SRP54-type protein, helical bundle domain AVL56_17760 PF01914 MarC family integral membrane protein AVL56_17770 PF12404 Peptidase AVL56_17770 PF00883 Cytosol aminopeptidase family, catalytic domain AVL56_17775 PF03749 Sugar fermentation stimulation protein RE domain AVL56_17775 PF17746 SfsA N-terminal OB domain AVL56_17780 PF01258 Prokaryotic dksA/traR C4-type zinc finger AVL56_17785 PF00749 tRNA synthetases class I (E and Q), catalytic domain AVL56_17790 PF01743 Poly A polymerase head domain AVL56_17790 PF12626 Polymerase A arginine-rich C-terminus AVL56_17790 PF12627 Probable RNA and SrmB- binding site of polymerase A AVL56_17795 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AVL56_17800 PF02548 Ketopantoate hydroxymethyltransferase AVL56_17805 PF02569 Pantoate-beta-alanine ligase AVL56_17810 PF00282 Pyridoxal-dependent decarboxylase conserved domain AVL56_17815 PF00563 EAL domain AVL56_17815 PF12792 CSS motif domain associated with EAL AVL56_17825 PF01061 ABC-2 type transporter AVL56_17830 PF00005 ABC transporter AVL56_17835 PF00072 Response regulator receiver domain AVL56_17835 PF00486 Transcriptional regulatory protein, C terminal AVL56_17840 PF00512 His Kinase A (phospho-acceptor) domain AVL56_17840 PF00672 HAMP domain AVL56_17840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_17845 PF00593 TonB dependent receptor AVL56_17845 PF07715 TonB-dependent Receptor Plug Domain AVL56_17850 PF18331 PKHD-type hydroxylase C-terminal domain AVL56_17850 PF13640 2OG-Fe(II) oxygenase superfamily AVL56_17865 PF12706 Beta-lactamase superfamily domain AVL56_17870 PF03070 TENA/THI-4/PQQC family AVL56_17875 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AVL56_17880 PF13186 Iron-sulfur cluster-binding domain AVL56_17880 PF04055 Radical SAM superfamily AVL56_17895 PF00571 CBS domain AVL56_17895 PF01595 Cyclin M transmembrane N-terminal domain AVL56_17900 PF03773 Predicted permease AVL56_17905 PF13722 5TM C-terminal transporter carbon starvation CstA AVL56_17905 PF02554 Carbon starvation protein CstA AVL56_17915 PF00474 Sodium:solute symporter family AVL56_17920 PF07859 alpha/beta hydrolase fold AVL56_17930 PF00175 Oxidoreductase NAD-binding domain AVL56_17930 PF00258 Flavodoxin AVL56_17930 PF00667 FAD binding domain AVL56_17955 PF00679 Elongation factor G C-terminus AVL56_17955 PF14492 Elongation Factor G, domain II AVL56_17955 PF03764 Elongation factor G, domain IV AVL56_17955 PF00009 Elongation factor Tu GTP binding domain AVL56_17955 PF03144 Elongation factor Tu domain 2 AVL56_17960 PF00177 Ribosomal protein S7p/S5e AVL56_17965 PF00164 Ribosomal protein S12/S23 AVL56_17970 PF04997 RNA polymerase Rpb1, domain 1 AVL56_17970 PF00623 RNA polymerase Rpb1, domain 2 AVL56_17970 PF04983 RNA polymerase Rpb1, domain 3 AVL56_17970 PF05000 RNA polymerase Rpb1, domain 4 AVL56_17970 PF04998 RNA polymerase Rpb1, domain 5 AVL56_17975 PF04561 RNA polymerase Rpb2, domain 2 AVL56_17975 PF04563 RNA polymerase beta subunit AVL56_17975 PF04565 RNA polymerase Rpb2, domain 3 AVL56_17975 PF00562 RNA polymerase Rpb2, domain 6 AVL56_17975 PF04560 RNA polymerase Rpb2, domain 7 AVL56_17975 PF10385 RNA polymerase beta subunit external 1 domain AVL56_17980 PF00542 Ribosomal protein L7/L12 C-terminal domain AVL56_17980 PF16320 Ribosomal protein L7/L12 dimerisation domain AVL56_17985 PF00466 Ribosomal protein L10 AVL56_17990 PF00687 Ribosomal protein L1p/L10e family AVL56_17995 PF00298 Ribosomal protein L11, RNA binding domain AVL56_17995 PF03946 Ribosomal protein L11, N-terminal domain AVL56_18000 PF00467 KOW motif AVL56_18000 PF02357 Transcription termination factor nusG AVL56_18005 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AVL56_18015 PF00664 ABC transporter transmembrane region AVL56_18015 PF00005 ABC transporter AVL56_18020 PF03737 Aldolase/RraA AVL56_18025 PF05649 Peptidase family M13 AVL56_18025 PF01431 Peptidase family M13 AVL56_18035 PF03880 DbpA RNA binding domain AVL56_18035 PF00271 Helicase conserved C-terminal domain AVL56_18035 PF00270 DEAD/DEAH box helicase AVL56_18040 PF01979 Amidohydrolase family AVL56_18050 PF08212 Lipocalin-like domain AVL56_18055 PF00248 Aldo/keto reductase family AVL56_18060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL56_18065 PF00128 Alpha amylase, catalytic domain AVL56_18075 PF01227 GTP cyclohydrolase I AVL56_18080 PF05643 Putative bacterial lipoprotein (DUF799) AVL56_18090 PF03783 Curli production assembly/transport component CsgG AVL56_18095 PF04371 Porphyromonas-type peptidyl-arginine deiminase AVL56_18100 PF00795 Carbon-nitrogen hydrolase AVL56_18115 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) AVL56_18120 PF00270 DEAD/DEAH box helicase AVL56_18120 PF08494 DEAD/H associated AVL56_18120 PF00271 Helicase conserved C-terminal domain AVL56_18130 PF04679 ATP dependent DNA ligase C terminal region AVL56_18130 PF01068 ATP dependent DNA ligase domain AVL56_18130 PF04675 DNA ligase N terminus AVL56_18140 PF00294 pfkB family carbohydrate kinase AVL56_18145 PF00480 ROK family AVL56_18155 PF02798 Glutathione S-transferase, N-terminal domain AVL56_18155 PF00043 Glutathione S-transferase, C-terminal domain AVL56_18170 PF00561 alpha/beta hydrolase fold AVL56_18185 PF00171 Aldehyde dehydrogenase family AVL56_18190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVL56_18190 PF00205 Thiamine pyrophosphate enzyme, central domain AVL56_18190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVL56_18200 PF00762 Ferrochelatase AVL56_18205 PF03806 AbgT putative transporter family AVL56_18210 PF01145 SPFH domain / Band 7 family AVL56_18215 PF12221 Bacterial membrane protein N terminal AVL56_18215 PF01145 SPFH domain / Band 7 family AVL56_18220 PF13167 GTP-binding GTPase N-terminal AVL56_18220 PF01926 50S ribosome-binding GTPase AVL56_18220 PF16360 GTP-binding GTPase Middle Region AVL56_18225 PF17209 Hfq protein AVL56_18235 PF01119 DNA mismatch repair protein, C-terminal domain AVL56_18235 PF08676 MutL C terminal dimerisation domain AVL56_18240 PF01520 N-acetylmuramoyl-L-alanine amidase AVL56_18245 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AVL56_18250 PF01256 Carbohydrate kinase AVL56_18250 PF03853 YjeF-related protein N-terminus AVL56_18255 PF08331 Domain of unknown function (DUF1730) AVL56_18265 PF01208 Uroporphyrinogen decarboxylase (URO-D) AVL56_18270 PF00293 NUDIX domain AVL56_18270 PF09297 NADH pyrophosphatase zinc ribbon domain AVL56_18275 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AVL56_18280 PF01475 Ferric uptake regulator family AVL56_18290 PF01894 Uncharacterised protein family UPF0047 AVL56_18295 PF00691 OmpA family AVL56_18295 PF05736 OprF membrane domain AVL56_18300 PF00772 DnaB-like helicase N terminal domain AVL56_18300 PF03796 DnaB-like helicase C terminal domain AVL56_18325 PF03475 3-alpha domain AVL56_18325 PF03473 MOSC domain AVL56_18335 PF00873 AcrB/AcrD/AcrF family AVL56_18340 PF01281 Ribosomal protein L9, N-terminal domain AVL56_18340 PF03948 Ribosomal protein L9, C-terminal domain AVL56_18345 PF01084 Ribosomal protein S18 AVL56_18350 PF01250 Ribosomal protein S6 AVL56_18355 PF00989 PAS fold AVL56_18355 PF00512 His Kinase A (phospho-acceptor) domain AVL56_18355 PF18698 Histidine kinase sensor domain AVL56_18355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_18355 PF00672 HAMP domain AVL56_18365 PF08447 PAS fold AVL56_18365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_18370 PF00512 His Kinase A (phospho-acceptor) domain AVL56_18370 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL56_18370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_18375 PF17200 Single Cache domain 2 AVL56_18375 PF00672 HAMP domain AVL56_18375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL56_18380 PF00356 Bacterial regulatory proteins, lacI family AVL56_18390 PF00232 Glycosyl hydrolase family 1 AVL56_18400 PF00005 ABC transporter AVL56_18405 PF01032 FecCD transport family AVL56_18410 PF01497 Periplasmic binding protein AVL56_18420 PF07715 TonB-dependent Receptor Plug Domain AVL56_18420 PF00593 TonB dependent receptor AVL56_18425 PF07690 Major Facilitator Superfamily AVL56_18430 PF00933 Glycosyl hydrolase family 3 N terminal domain AVL56_18430 PF01915 Glycosyl hydrolase family 3 C-terminal domain AVL56_18430 PF14310 Fibronectin type III-like domain AVL56_18445 PF03601 Conserved hypothetical protein 698 AVL56_18450 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AVL56_18455 PF00248 Aldo/keto reductase family AVL56_18460 PF00392 Bacterial regulatory proteins, gntR family AVL56_18460 PF07702 UTRA domain AVL56_18475 PF00474 Sodium:solute symporter family AVL56_18480 PF01545 Cation efflux family AVL56_18500 PF00722 Glycosyl hydrolases family 16 AVL56_18515 PF00593 TonB dependent receptor AVL56_18515 PF07715 TonB-dependent Receptor Plug Domain AVL56_18520 PF00664 ABC transporter transmembrane region AVL56_18520 PF00005 ABC transporter AVL56_18525 PF00664 ABC transporter transmembrane region AVL56_18525 PF00005 ABC transporter AVL56_18535 PF02322 Cytochrome bd terminal oxidase subunit II AVL56_18540 PF01654 Cytochrome bd terminal oxidase subunit I AVL56_18550 PF02954 Bacterial regulatory protein, Fis family AVL56_18550 PF00072 Response regulator receiver domain AVL56_18550 PF00158 Sigma-54 interaction domain AVL56_18585 PF09285 Elongation factor P, C-terminal AVL56_18585 PF01132 Elongation factor P (EF-P) OB domain AVL56_18585 PF08207 Elongation factor P (EF-P) KOW-like domain AVL56_18615 PF13474 SnoaL-like domain AVL56_18655 PF05532 CsbD-like AVL56_18670 PF04542 Sigma-70 region 2 AVL56_18670 PF08281 Sigma-70, region 4 AVL56_18675 PF05922 Peptidase inhibitor I9 AVL56_18675 PF00082 Subtilase family AVL56_18695 PF00472 RF-1 domain AVL56_18700 PF00561 alpha/beta hydrolase fold AVL56_18700 PF08386 TAP-like protein AVL56_18725 PF01292 Prokaryotic cytochrome b561 AVL56_18730 PF04264 YceI-like domain AVL56_18735 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL56_18740 PF00593 TonB dependent receptor AVL56_18740 PF07715 TonB-dependent Receptor Plug Domain AVL56_18750 PF01048 Phosphorylase superfamily AVL56_18755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_18755 PF03466 LysR substrate binding domain AVL56_18760 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AVL56_18765 PF16884 N-terminal domain of oxidoreductase AVL56_18765 PF00107 Zinc-binding dehydrogenase AVL56_18770 PF00990 Diguanylate cyclase, GGDEF domain AVL56_18770 PF01590 GAF domain AVL56_18770 PF00360 Phytochrome region AVL56_18770 PF00563 EAL domain AVL56_18775 PF00512 His Kinase A (phospho-acceptor) domain AVL56_18775 PF09308 LuxQ, periplasmic AVL56_18775 PF00072 Response regulator receiver domain AVL56_18775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_18790 PF00296 Luciferase-like monooxygenase AVL56_18800 PF00005 ABC transporter AVL56_18820 PF02492 CobW/HypB/UreG, nucleotide-binding domain AVL56_18820 PF07683 Cobalamin synthesis protein cobW C-terminal domain AVL56_18835 PF00593 TonB dependent receptor AVL56_18835 PF07715 TonB-dependent Receptor Plug Domain AVL56_18840 PF01258 Prokaryotic dksA/traR C4-type zinc finger AVL56_18865 PF01380 SIS domain AVL56_18870 PF08220 DeoR-like helix-turn-helix domain AVL56_18870 PF00455 DeoR C terminal sensor domain AVL56_18875 PF00132 Bacterial transferase hexapeptide (six repeats) AVL56_18875 PF12804 MobA-like NTP transferase domain AVL56_18875 PF14602 Hexapeptide repeat of succinyl-transferase AVL56_18885 PF00892 EamA-like transporter family AVL56_18890 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AVL56_18890 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AVL56_18895 PF12833 Helix-turn-helix domain AVL56_18895 PF01965 DJ-1/PfpI family AVL56_18900 PF00144 Beta-lactamase AVL56_18915 PF02233 NAD(P) transhydrogenase beta subunit AVL56_18920 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AVL56_18925 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AVL56_18925 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AVL56_18945 PF02492 CobW/HypB/UreG, nucleotide-binding domain AVL56_18945 PF07683 Cobalamin synthesis protein cobW C-terminal domain AVL56_18955 PF00563 EAL domain AVL56_18955 PF00990 Diguanylate cyclase, GGDEF domain AVL56_18955 PF03707 Bacterial signalling protein N terminal repeat AVL56_18960 PF00118 TCP-1/cpn60 chaperonin family AVL56_18965 PF00166 Chaperonin 10 Kd subunit AVL56_18975 PF02683 Cytochrome C biogenesis protein transmembrane region AVL56_18975 PF11412 Disulphide bond corrector protein DsbC AVL56_18980 PF01551 Peptidase family M23 AVL56_18985 PF01220 Dehydroquinase class II AVL56_18990 PF00364 Biotin-requiring enzyme AVL56_18995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVL56_18995 PF02785 Biotin carboxylase C-terminal domain AVL56_18995 PF00289 Biotin carboxylase, N-terminal domain AVL56_19015 PF00929 Exonuclease AVL56_19015 PF02811 PHP domain AVL56_19015 PF14579 Helix-hairpin-helix motif AVL56_19015 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AVL56_19015 PF07733 Bacterial DNA polymerase III alpha NTPase domain AVL56_19015 PF11490 DNA polymerase III polC-type N-terminus II AVL56_19030 PF01355 High potential iron-sulfur protein AVL56_19035 PF01425 Amidase AVL56_19050 PF01207 Dihydrouridine synthase (Dus) AVL56_19055 PF02954 Bacterial regulatory protein, Fis family AVL56_19060 PF01808 AICARFT/IMPCHase bienzyme AVL56_19060 PF02142 MGS-like domain AVL56_19070 PF02844 Phosphoribosylglycinamide synthetase, N domain AVL56_19070 PF02843 Phosphoribosylglycinamide synthetase, C domain AVL56_19070 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AVL56_19080 PF00520 Ion transport protein AVL56_19080 PF00027 Cyclic nucleotide-binding domain AVL56_19090 PF00485 Phosphoribulokinase / Uridine kinase family AVL56_19095 PF00860 Permease family AVL56_19100 PF07660 Secretin and TonB N terminus short domain AVL56_19100 PF00593 TonB dependent receptor AVL56_19100 PF07715 TonB-dependent Receptor Plug Domain AVL56_19115 PF00486 Transcriptional regulatory protein, C terminal AVL56_19115 PF00072 Response regulator receiver domain AVL56_19120 PF00512 His Kinase A (phospho-acceptor) domain AVL56_19120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL56_19120 PF00672 HAMP domain AVL56_19130 PF01293 Phosphoenolpyruvate carboxykinase AVL56_19135 PF01430 Hsp33 protein AVL56_19140 PF01479 S4 domain AVL56_19145 PF11356 Type II secretion system protein C AVL56_19150 PF00263 Bacterial type II and III secretion system protein AVL56_19150 PF03958 Bacterial type II/III secretion system short domain AVL56_19155 PF00437 Type II/IV secretion system protein AVL56_19160 PF00482 Type II secretion system (T2SS), protein F AVL56_19165 PF07963 Prokaryotic N-terminal methylation motif AVL56_19165 PF08334 Type II secretion system (T2SS), protein G AVL56_19170 PF12019 Type II transport protein GspH AVL56_19170 PF07963 Prokaryotic N-terminal methylation motif AVL56_19175 PF02501 Type II secretion system (T2SS), protein I AVL56_19175 PF07963 Prokaryotic N-terminal methylation motif AVL56_19180 PF07963 Prokaryotic N-terminal methylation motif AVL56_19180 PF11612 Type II secretion system (T2SS), protein J AVL56_19185 PF03934 Type II secretion system (T2SS), protein K AVL56_19190 PF12693 GspL periplasmic domain AVL56_19190 PF05134 Type II secretion system (T2SS), protein L AVL56_19195 PF04612 Type II secretion system (T2SS), protein M AVL56_19205 PF12706 Beta-lactamase superfamily domain AVL56_19210 PF00171 Aldehyde dehydrogenase family AVL56_19215 PF01931 Protein of unknown function DUF84 AVL56_19220 PF13419 Haloacid dehalogenase-like hydrolase AVL56_19225 PF00293 NUDIX domain AVL56_19230 PF00459 Inositol monophosphatase family AVL56_19240 PF00535 Glycosyl transferase family 2 AVL56_19245 PF04349 Periplasmic glucan biosynthesis protein, MdoG AVL56_19255 PF06794 Uncharacterised protein family (UPF0270) AVL56_19260 PF00561 alpha/beta hydrolase fold AVL56_19270 PF00005 ABC transporter AVL56_19270 PF12848 ABC transporter AVL56_19285 PF04102 SlyX AVL56_19295 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AVL56_19295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL56_19305 PF03449 Transcription elongation factor, N-terminal AVL56_19305 PF01272 Transcription elongation factor, GreA/GreB, C-term AVL56_19310 PF16921 Tex protein YqgF-like domain AVL56_19310 PF09371 Tex-like protein N-terminal domain AVL56_19310 PF00575 S1 RNA binding domain AVL56_19310 PF17674 HHH domain AVL56_19325 PF00561 alpha/beta hydrolase fold AVL56_19330 PF00156 Phosphoribosyl transferase domain AVL56_19340 PF01106 NifU-like domain AVL56_19340 PF01521 Iron-sulphur cluster biosynthesis AVL56_19350 PF01177 Asp/Glu/Hydantoin racemase AVL56_19365 PF06445 GyrI-like small molecule binding domain AVL56_19370 PF01554 MatE AVL56_19385 PF02630 SCO1/SenC AVL56_19390 PF01040 UbiA prenyltransferase family AVL56_19395 PF02628 Cytochrome oxidase assembly protein AVL56_19415 PF00510 Cytochrome c oxidase subunit III AVL56_19420 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AVL56_19425 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVL56_19430 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AVL56_19430 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AVL56_19435 PF00717 Peptidase S24-like AVL56_19435 PF01726 LexA DNA binding domain AVL56_19440 PF00589 Phage integrase family AVL56_19440 PF02899 Phage integrase, N-terminal SAM-like domain AVL56_19470 PF00873 AcrB/AcrD/AcrF family AVL56_19475 PF00520 Ion transport protein AVL56_19475 PF00027 Cyclic nucleotide-binding domain AVL56_19485 PF03616 Sodium/glutamate symporter AVL56_19495 PF00990 Diguanylate cyclase, GGDEF domain AVL56_19495 PF17151 Periplasmic sensor domain AVL56_19525 PF00593 TonB dependent receptor AVL56_19525 PF07715 TonB-dependent Receptor Plug Domain AVL56_19535 PF01553 Acyltransferase AVL56_19540 PF00291 Pyridoxal-phosphate dependent enzyme AVL56_19540 PF00585 C-terminal regulatory domain of Threonine dehydratase AVL56_19545 PF00920 Dehydratase family AVL56_19550 PF01063 Amino-transferase class IV AVL56_19555 PF03458 UPF0126 domain AVL56_19560 PF01078 Magnesium chelatase, subunit ChlI AVL56_19560 PF13335 Magnesium chelatase, subunit ChlI C-terminal AVL56_19565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL56_19565 PF03466 LysR substrate binding domain AVL56_19570 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AVL56_19570 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AVL56_19575 PF07690 Major Facilitator Superfamily AVL56_19585 PF07244 Surface antigen variable number repeat AVL56_19585 PF01103 Surface antigen AVL56_19585 PF17243 POTRA domain TamA domain 1 AVL56_19590 PF04357 TamB, inner membrane protein subunit of TAM complex AVL56_19615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVL56_19615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL56_19625 PF00696 Amino acid kinase family AVL56_19625 PF01472 PUA domain AVL56_19645 PF03109 ABC1 family AVL56_19655 PF04116 Fatty acid hydroxylase superfamily AVL56_19670 PF01979 Amidohydrolase family AVL56_19690 PF06724 Domain of Unknown Function (DUF1206) AVL56_19695 PF01206 Sulfurtransferase TusA AVL56_19700 PF00156 Phosphoribosyl transferase domain AVL56_19705 PF01138 3' exoribonuclease family, domain 1 AVL56_19705 PF03725 3' exoribonuclease family, domain 2 AVL56_19710 PF08340 Domain of unknown function (DUF1732) AVL56_19710 PF03755 YicC-like family, N-terminal region AVL56_19725 PF04820 Tryptophan halogenase AVL56_19730 PF04820 Tryptophan halogenase AVL56_19740 PF00232 Glycosyl hydrolase family 1 AVL56_19750 PF00356 Bacterial regulatory proteins, lacI family AVL56_19760 PF05736 OprF membrane domain AVL56_19760 PF00691 OmpA family AVL56_19765 PF01966 HD domain AVL56_19780 PF00043 Glutathione S-transferase, C-terminal domain AVL56_19780 PF02798 Glutathione S-transferase, N-terminal domain AVL56_19795 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AVL56_19795 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AVL56_19800 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVL56_19800 PF02874 ATP synthase alpha/beta family, beta-barrel domain AVL56_19805 PF00231 ATP synthase AVL56_19810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVL56_19810 PF00306 ATP synthase alpha/beta chain, C terminal domain AVL56_19810 PF02874 ATP synthase alpha/beta family, beta-barrel domain AVL56_19815 PF00213 ATP synthase delta (OSCP) subunit AVL56_19820 PF00430 ATP synthase B/B' CF(0) AVL56_19825 PF00137 ATP synthase subunit C AVL56_19830 PF00119 ATP synthase A chain AVL56_19840 PF17762 HTH domain found in ParB protein AVL56_19840 PF02195 ParB-like nuclease domain AVL56_19845 PF13614 AAA domain AVL56_19850 PF02527 rRNA small subunit methyltransferase G AVL56_19855 PF01134 Glucose inhibited division protein A AVL56_19855 PF13932 GidA associated domain AVL56_19870 PF00258 Flavodoxin AVL56_19875 PF01926 50S ribosome-binding GTPase AVL56_19875 PF12631 MnmE helical domain AVL56_19875 PF10396 GTP-binding protein TrmE N-terminus AVL56_19880 PF04461 Protein of unknown function (DUF520) AVL56_19885 PF02096 60Kd inner membrane protein AVL56_19885 PF14849 YidC periplasmic domain AVL56_19890 PF00825 Ribonuclease P AVL56_19895 PF00468 Ribosomal protein L34